genome.fa.s81.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167906.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59337

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74--438	72	5.1	72	63	17	209	26	22	16	33	1.96
8--590	144	4.0	144	89	2	787	26	22	16	33	1.95
4911--4964	25	2.2	24	83	9	65	48	9	0	42	1.35
7369--7491	56	2.2	57	84	11	164	39	11	6	42	1.67
7488--7535	5	9.8	5	79	20	57	81	0	2	16	0.79
7483--7535	13	4.0	13	76	18	56	79	0	3	16	0.88
7560--7599	7	5.9	7	88	11	57	72	0	0	27	0.85
7820--7849	9	3.4	9	95	4	53	0	46	0	53	1.00
8009--8047	20	2.0	20	84	0	51	56	12	5	25	1.57
8384--8479	42	2.3	42	83	5	113	64	0	6	29	1.18
8415--8592	4	44.8	4	69	14	77	65	3	3	28	1.25
8417--8479	22	3.0	22	88	4	94	63	0	4	31	1.15
8415--8596	10	17.5	10	67	24	78	65	3	3	28	1.24
8425--8611	29	6.4	29	69	17	102	66	4	2	26	1.24
8425--8615	21	9.6	20	72	14	103	67	4	2	26	1.22
8831--9165	42	7.9	43	79	9	298	41	20	14	24	1.88
8847--9094	88	2.8	85	82	11	272	43	19	13	23	1.87
8855--9146	130	2.2	133	85	6	382	43	18	13	24	1.86
10175--10231	11	5.4	10	80	12	60	10	8	0	80	0.90
10168--10219	24	2.1	24	86	10	70	11	7	0	80	0.89
10168--10224	13	4.4	13	79	18	57	10	8	0	80	0.90
17679--17838	58	2.8	58	88	2	252	37	13	5	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17854--17915	12	5.2	12	77	16	67	79	0	3	17	0.87
17854--17915	6	10.7	6	70	19	51	79	0	3	17	0.87
17944--17989	3	15.0	3	90	4	74	67	2	0	30	1.03
18525--18567	19	2.2	19	87	8	59	74	11	0	13	1.07
18511--18597	11	7.3	11	75	17	50	74	8	2	14	1.14
18545--18598	25	2.1	26	86	3	74	79	7	1	11	1.00
18540--18600	25	2.4	25	78	10	70	77	8	1	13	1.07
19926--20069	15	9.4	15	75	9	121	47	31	2	18	1.60
19926--20069	31	4.7	30	79	8	148	47	31	2	18	1.60
19920--20069	47	3.2	46	80	10	146	49	30	2	18	1.58
20012--20129	30	3.9	31	75	15	104	47	31	0	20	1.56
21536--21734	42	4.7	42	74	14	133	64	3	4	27	1.27
21593--21774	4	45.8	4	71	16	96	65	3	2	28	1.22
21594--21769	34	5.1	33	72	20	119	65	3	2	28	1.23
21603--21794	14	13.1	14	69	21	85	67	3	2	26	1.18
21715--21791	8	10.3	7	75	17	50	75	3	1	19	1.03
21712--21794	18	4.5	18	77	19	75	74	3	1	20	1.03
24444--24487	17	2.8	16	83	16	56	77	2	0	20	0.88
24519--24965	170	2.6	170	97	0	831	37	10	15	36	1.82
26280--26327	21	2.3	21	82	3	62	50	0	4	45	1.21
27754--27782	13	2.1	14	93	6	51	17	0	3	79	0.87
27759--27857	14	7.2	14	74	3	58	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27769--27843	34	2.4	31	80	10	89	32	4	0	64	1.12
28183--28214	13	2.6	13	90	9	50	9	0	12	78	0.97
28250--28309	31	1.9	31	89	0	93	18	16	21	43	1.88
28727--28942	58	3.7	58	77	9	213	43	6	14	35	1.73
29403--29850	59	7.7	58	81	6	471	37	13	6	42	1.72
29400--29835	118	3.7	118	88	3	571	37	13	7	41	1.73
29402--29850	177	2.6	174	82	7	534	37	13	6	42	1.72
29868--29952	6	13.5	6	77	12	82	77	0	5	16	0.95
29868--29941	33	2.3	32	88	4	105	77	0	6	16	0.98
30387--30436	16	3.1	16	88	2	73	68	0	10	22	1.19
30387--30435	17	2.9	16	90	6	71	69	0	10	20	1.17
30681--30733	1	53.0	1	84	0	70	0	0	7	92	0.39
30681--30734	22	2.4	22	93	3	90	0	0	9	90	0.45
30756--30940	42	4.3	44	83	2	207	36	20	16	26	1.93
30756--30940	86	2.1	87	85	4	241	36	20	16	26	1.93
30912--30967	27	2.0	28	93	3	96	33	19	14	32	1.92
30940--31372	41	10.5	41	83	6	439	36	21	15	26	1.93
30875--31009	69	2.0	68	86	5	191	37	20	14	27	1.91
30844--31051	111	1.9	110	86	6	294	34	20	16	27	1.95
30805--31093	153	1.9	155	86	4	424	35	20	16	27	1.94
30940--31372	206	2.1	204	82	5	505	36	21	15	26	1.93
33055--33109	14	3.6	14	79	20	58	5	14	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33058--33154	46	2.1	46	86	3	133	8	16	0	75	1.03
33066--33124	15	3.9	14	76	12	55	6	13	0	79	0.92
34686--34765	6	13.7	6	74	12	51	23	1	1	73	0.97
34696--34767	16	4.3	16	70	13	56	25	1	1	72	1.01
34689--34779	44	2.0	45	82	16	109	26	2	1	70	1.06
34687--34809	57	2.1	57	82	11	144	26	2	1	69	1.09
34690--34807	55	2.3	50	81	12	132	26	2	1	69	1.11
35132--35174	22	2.0	22	86	4	61	32	4	11	51	1.59
35334--35378	19	2.3	19	76	3	54	28	22	17	31	1.97
35599--35639	5	7.8	5	84	10	55	19	41	36	2	1.65
35670--35702	12	2.8	12	95	0	57	12	0	3	84	0.72
35723--35778	18	3.0	20	78	21	75	16	8	0	75	1.05
35711--35778	21	3.5	21	81	18	85	19	7	0	73	1.06
35723--35776	13	4.2	13	69	21	51	14	9	0	75	1.03
35763--35804	22	1.9	22	85	9	59	14	11	2	71	1.24
35836--36045	58	3.6	57	89	4	312	43	7	12	36	1.70
35827--36045	119	1.8	120	92	1	370	45	6	12	35	1.69
41213--41458	41	6.0	40	91	2	341	23	17	22	36	1.95
41235--41458	83	2.7	82	94	0	385	23	17	23	35	1.95
41233--41458	124	1.8	123	95	0	407	23	17	23	35	1.95
41464--41516	1	53.0	1	76	0	52	88	7	0	3	0.61
41464--41502	7	5.6	7	96	0	69	89	10	0	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41464--41516	14	3.6	14	82	12	63	88	7	0	3	0.61
41466--41516	26	2.0	26	88	0	75	88	7	0	3	0.63
41591--41680	1	90.0	1	77	0	81	87	7	2	2	0.70
41592--41680	20	4.5	19	84	8	108	87	7	2	2	0.70
41593--41674	29	2.8	28	85	12	112	87	7	2	2	0.70
41871--41947	38	2.0	39	82	12	97	29	5	1	63	1.24
41855--41963	39	2.7	38	81	14	107	30	5	1	62	1.28
42273--42315	22	2.0	22	86	4	61	32	4	11	51	1.59
42824--42856	12	2.8	12	95	0	57	12	0	3	84	0.72
42878--42933	18	3.0	20	78	21	75	16	8	0	75	1.05
42877--42929	21	2.8	20	83	16	76	15	9	0	75	1.04
42878--42931	13	4.2	13	69	21	51	14	9	0	75	1.03
42918--42959	22	1.9	22	85	9	59	14	11	2	71	1.24
42966--43257	59	4.9	59	86	3	401	46	6	12	34	1.67
46161--46548	57	6.7	57	78	11	398	37	13	6	42	1.70
46161--46540	119	3.3	118	87	6	510	37	14	6	41	1.71
46566--46629	5	12.8	5	76	23	64	78	0	4	17	0.92
46566--46629	13	4.3	15	78	21	64	78	0	4	17	0.92
46565--46623	30	1.9	31	93	3	102	76	0	6	16	1.00
46566--46629	8	6.4	10	75	24	64	78	0	4	17	0.92
46571--46634	25	2.6	25	87	5	85	76	0	6	17	0.98
47019--47122	39	2.6	41	76	7	108	67	1	6	24	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47066--47172	16	6.7	15	76	17	92	72	0	4	22	1.02
47063--47172	33	3.4	32	79	14	95	71	0	5	22	1.06
47069--47172	48	2.1	49	78	5	113	73	0	4	22	1.02
51250--51358	55	2.0	55	85	1	148	47	9	6	36	1.61
54324--54559	58	4.0	59	89	6	345	44	8	12	33	1.74
54327--54559	119	2.0	118	92	2	387	44	9	12	33	1.74
58381--58448	30	2.3	29	82	10	75	76	1	14	7	1.07

Tables:   1

The End!