Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167910.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58034
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Found at i:8066 original size:43 final size:44
Alignment explanation
Indices: 7979--8067 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
7969 GCGATGGGTG
* *
7979 CTGGTACTTGGCCCTTATATTGGCCCCCCTCTCCCTCATTAAAC
1 CTGGTACTTGGCCCTTATATTGGCCACCCTCTCCCTCATCAAAC
8023 CTGGTACTTGGCCCTTATATTGG-CACCCTCTCCCTCATCAAAC
1 CTGGTACTTGGCCCTTATATTGGCCACCCTCTCCCTCATCAAAC
8066 CT
1 CT
8068 TGAGAACTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 20 0.47
44 23 0.53
ACGTcount: A:0.17, C:0.38, G:0.13, T:0.31
Consensus pattern (44 bp):
CTGGTACTTGGCCCTTATATTGGCCACCCTCTCCCTCATCAAAC
Found at i:8719 original size:26 final size:26
Alignment explanation
Indices: 8690--8742 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8680 GTTGACTTAG
* *
8690 GCATACGGATTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
8716 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8742 G
1 G
8743 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:9633 original size:26 final size:26
Alignment explanation
Indices: 9581--9633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9571 GTTGACTTAG
* *
9581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
9607 GCATACGAAGTTCATTCCCAATGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
9633 G
1 G
9634 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:10208 original size:896 final size:895
Alignment explanation
Indices: 8023--14722 Score: 7872
Period size: 896 Copynumber: 7.5 Consensus size: 895
8013 CTCATTAAAC
* * * *
8023 CTGGTACTTGGCCCTTATATTGGCACCCTCTCCCTCATCAAACCTTGAGAACTCACACCCCTTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
8088 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
8153 TTTTTCAAGTGGTCACAAATTCCTGTAGATTTTGAGTTTTTAGCTGAATTTCTTTGTGCATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
8218 ACAAAAATACAAGGATCACGTCTACCAAGTGTGAGGCCAAAACTTCTTCTGAAAAAATTTTAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
8283 AAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAA
261 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * * *
8348 ACATCACACGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAATATGGCATTGGCATG
326 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
8413 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCCG
391 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCG
** *
8478 CCTCTCTTTTCGGCGTAGTGCCCGCCCG-TCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAG
456 CCTCTCTGGTCGGCGTAGTGCCCGCCCGCT-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* ** * * * * * * *
8542 TTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTTATGGGAGTAGGATCA-TAGCATGCAAGG
520 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGGG
* * * * * *
8606 GGGGACCCGATCGATCCCC-AGCTTGGGCATCCTACCCTTTTGGCCGGCTGAGCGCCCGCACGCG
585 GGGGACCCGCT-GATCCCCGA-CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
** * * * *
8670 CGTTTCACGGGTTGACTTAGGCATACGGATTTCTTTCCCAGTCTAAGCATATGGAGTTCATTCCC
648 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
* *** * *
8735 AGTGTAAGATCAGACCAGACCGAGGGTTACAGGTACACATGCTGGGCTCAGGCATGTGCTGGTGC
713 AGTGTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGT
* * * * *
8800 CGCATTTTGTTTTTTGC-CTGGGGCACCATTGTCAGAGCATCGTCGGAGAACCTGACCGGCAGCA
778 CGCA-TTT-TTTTTCGCTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
8864 TTGGGGTTCCGGCGATTGGGGCAGCGG-GGGGGGTGTGCGGACATGATTTGCGATGGGTG
840 TTGGGGTTCC-GCGAATGGGG--G-GGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * *
8923 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTAATCAAACCTTGAGAACTCGCACCCCCTCA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
8988 AAGAGCATTTGAGATTTTACAGG-TT--TG-C--T-GCCA--AAAGTGT-TCGAAATAGGGACAC
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACAC
* *
9043 TTTTTTCAAATGGTCACAAAATCCTGTACACGTTGAGTTTTTAGCTGAATTTTTTTGTGCATACC
130 TTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
9108 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
195 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * ** *
9173 AAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCACGA
260 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
9238 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
325 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
9303 GGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCATGAGTTGCGCATCCC
390 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCC
* * * * * *
9368 GCCTCTCTGGTAGGCGTAGTGCCCGCCCGCTCGCTCATTTCATTGATTGGCTTAGCCAT-CGGTG
455 GCCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * * ** *
9432 TTGATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGTGGCAGCAAGATTGGCAGCACGTAAGG
520 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGGG
* * * * *
9497 GGGAACTCAGCTAATCCCCGACTTGTGCATCTTGGCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
585 GGGGAC-CCGCTGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
9562 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
649 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * ** * * *
9627 ATGTAAGATCAGACTAGACTGAGGGTTGTGCATGCACATGCTGGCCTCGGGCATGTGCTGGGGTC
714 GTGTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTC
* * *
9692 GCATTTCTTTTTCTCTCGAGGCACCATCGTCGGAGCATCG-CTGGAGAACCTGACCGACGGCTTT
779 GCATTT-TTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATT
* *
9756 GGGGTTCCCGCGAATGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGCTGGGTG
842 GGGGTT-CCGCGAATGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
9811 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
9875 AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGAACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
9940 TTATTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
10005 AAAAAAATACAAGGATCACGTCTAGCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * * * * *
10070 AAATCCCGAACCATAAAAAGTTTTAAAAATCATGACAAATAGAAAGCAAGTCGTCTTGCCACGAA
261 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * *
10135 ACTTCACATGAAGGCTTAAGGGACCATTATATGATTTTACAAGCCATAAAAATGTCATTGGCATG
326 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
10200 GTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCG
391 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCG
* * * ** *
10265 CCTCTCTGGTCGGCATAGTGCCCACCCACTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGTGT
456 CCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * ** * * *
10330 TGATTCCCAGTCTAAGATCGGATC-GATCTGAGGGTTGTGGTAGTAGGATCAGCAGCATGCAGGG
521 TCATTCCCAGTCTAAGATCAGACCAGA-CCAAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGGG
* * * * * * * * * *
10394 GGGGACTCGATCGATCCCCGACTTGTTCGTCCTACCCCTCTGGCTGGTTGACCTCCCGTACGCTC
585 GGGGACCCGCT-GATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * ** *
10459 GTTTCATGCGTT-ATCTT-GGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
649 GTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
* * * * *
10522 AGTGTAAGATCGGACTGGACTGAGGGTTGCGGGTGCTCATGCTGGGCTTCA-GCATGTGCTGGTG
713 AGTGTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGC-TCAGGCATGTGCTGGTG
* * * * * * *
10586 TCGAATTTTGTTTT-GCTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGATCGGCGGCAA
777 TCGCATTTT-TTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * *
10650 TGGGG-TCTGACGATTGGGGGGGCGAGCGGGTGTGCGCACATGATGTGCGATGGGTG
841 TGGGGTTCCG-CGAATGGGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
10706 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCTCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
10771 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
10836 TTTTTCAAATGGTCTCAAAATCCTGTACACTTCGATTTTTTAGATGAATTTTTTTGTGCATGCCC
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-CC
* * * *
10901 TA-AAAAATACAAGGATGATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
195 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
** * *
10965 AAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
260 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
*
11030 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC-T
325 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** * * *
11094 CAACAAAAACATGAAGATGAGCCTAAACCCACCTACCACCTTATCGATCCATGACTTGCGCATCC
390 -GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCC
* * * * ** *
11159 CGCCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATAAGGA
454 CGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* ** ** ** *
11224 GTTCATTCCCAATCTAAGATCAGACC-GAATAGAGGGTTGCAGTAGCAGGATCAATAGCACGTCG
519 GTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGTGGTAGCAGGATCAGCAGCACGTAG
* * * * * * *
11288 GGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTAGCCAGTTGAGCGCCCGCACGT
583 GGGGGGACCCG-CTGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
11353 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAAG-AT-CG--G---A---C
647 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
* *
11408 C------AG----G--T----CGAGGGTTGTGGGTACACATGCTGGGCTCAGGCATGTGCTGCTG
712 CAGTGTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * * * *
11457 TCGTACTTTTTTTCACTTGGGG---CA----C----CATCGTCGGAGAACCAGACCGACGGCATT
777 TCGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* *
11511 GGGGTTCCGACG-ATTGGGGTGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
842 GGGGTTCCG-CGAATGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
11566 CTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
11630 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAGGTGTCTCAAATGGGAACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * **
11695 TTTTTAAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
11759 ACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
11824 AAATCCCAAACCGTAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAACGAGTCATCTTGCCATGA
261 AAATCCCGAACCGTAAAAAGTTTCAAAAA-TCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
*
11888 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCAT
325 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
11953 GGCAGAAATATGAAGTTGTGCCTAAACTCACCTACCACCCTATTGATCCATGACTTGCGCATCCT
390 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC---T-AT-C--GA--T-C-CA---T
* * *
12018 GTCCACCTACCACTCTATCGATCCACGGTTTACACATCCCGTCTCTCTGGTCGGCATAGTACCCG
441 G----------A--CT-T-G-----C-G------CATCCCGCCTCTCTGGTCGGCGTAGTGCCCG
* * * * *
12083 CCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAAC
480 CCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* ** * ** * * * * * *
12147 TAGACTGAGGATTGCAGTAGCAAGATC-GACAGCGCGCAGGAGGGGAACCGGTCGATCCCCGACT
544 CAGACCAAGGGTTGTGGTAGCAGGATCAG-CAGCACGTAGGGGGGGACCCGCT-GATCCCCGACT
* * *
12211 TGTGCATCCTGCCCCAACTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCA
607 TGTGCATCCTGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ****
12276 TACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGA-TCAGGGTA
671 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGACT-AGACCG
* * *** * * * *
12340 AGGGTTGCGAGCATACATGCTGGGCTCGGGCATGTGCTGGTGCCTCA-TTTTTTTCGCTCAGGGC
735 AGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTTTTCGCTCGGGGC
* * * *
12404 ATCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGTATT--GG----G-G---GGCGGGGC-
800 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGAATGGGGGGGCG
* *
12458 ---AGTGTGCGCTCATGATGTGCGATGGGTG
865 GGGGGTGTGCGCACATGATGTGCGATGGGTG
*
12486 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
12551 AAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAATGGGGATAGT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
12616 TTTTTCAAATGGTCACAAAATCCTGTACTCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
12681 ACAAGAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAA
** * * *
12746 AAAAT-TTGAAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
260 AAAATCCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
12810 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
324 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
12875 TAGTAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCC
389 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCC
* * * * * * *
12940 CACCTCTCTGGCCGACGTAGTGCCCACCCG-TCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGG
454 CGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCT-CGCTCGTTTCATCGGTTGGCTTAGGCATACGG
** * * * * * * *
13004 AGTTCATTCTTAGTCTAAGATCGGATCAGACCGAGGGTTGTGCTAGTAGGAT-AGGAAGCATGTA
518 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCA-GCAGCACGTA
* * * * * * * * *
13068 -GGGGGGACCTGATCGATCCTCGGCTTGTGCATCCTGCCCCACT-GCCTAGTTGAGCACCCACAC
582 GGGGGGGACCCGCT-GATCCCCGACTTGTGCATCCTGCCCCTCTGGCC-GGCTGAGCGCCCGCAC
* ** * * *
13131 GCTTGTTTTATGGCTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCACAC-AGAGTTCAT
645 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCAT
* * *
13195 TCCCAGTGTAATATCAGA-TCAGACCAAGGGTTGTGGGTGCA-ATTACTGGGCTCAGGCATGTGC
709 TCCCAGTGTAAGATCAGACT-AGACCGAGGGTTGTGGGTGCACA-TGCTGGGCTCAGGCATGTGC
* * *
13258 TGGTGTCAC-TTTGTTTTTCGCTCGGGGCACCATCG-CTGAAGCATCGTCAGAGAACCTGACCGA
772 TGGTGTCGCATTT-TTTTTCGCTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGA
* * * *
13321 CGGTATTGGGGTTCCGGCG-ATTGGGGGGCAGGGGGTGTACGCACATGATGTGCGATGGGTG
835 CGGCATTGGGGTTCC-GCGAATGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
13382 CTGGTACCTGGCCCTTATATTGGCCCCCTATCCCT-TTGCAAACCTTGAGAACTCACACCCCCTT
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTT
* * *
13446 AAAGAGCATTTGAGATTTTACAGGGTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*** * * * *
13511 TTTTTTCAAATGGTCACCCTAT-C-GATCCACTTTGACTTTTTAGTTGAATTTTTTTATGCATGC
130 TTTTTTCAAATGGTCACAAAATCCTG-TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
13574 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTA
194 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* *
13639 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTG-CATG
259 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
13702 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCA
324 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
13767 TGGTAGAAATATGATGATATGCCCAAACCCACCTACCACCCTATTGATCCATGACTTGCGCATCC
389 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCC
* * * * * * * *
13832 CGCCTCTCTGGCCGACGTAGTACCCCCCCG-TCCGCTCATTTCGTCGGTTGGCGTAGGCATACGA
454 CGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCT-CGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * *
13896 AGTTCATTCCCAATCTAAGATCAAACCAAACCAAGGGTTGTGGTAGCAAGATCAGCAGCACATA-
518 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCAGCAGCACGTAG
* * *
13960 GGGGGGACCCGACAGATCCCCGACTTGTGCATCCTGCCCCTCCGGCCGGCTGAGCGCCCGCTCGC
583 GGGGGGACCCG-CTGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
14025 TCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT-C
647 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
* * * * *
14089 TAATTTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG
712 CAGTGTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * * *** * *
14154 CCGCATTGTTTTTT-GCCCGAGGCACCATAACCGAAGCATCG-CTGGAGAACCTGACCGACAGCA
777 TCGCATT-TTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCA
* * *
14217 TTGGGGTTTCGACGATTGGGGGAGCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTG
840 TTGGGGTTCCG-CGAATGGGGGGGC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTG
*
14276 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
14341 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
14406 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
14471 ACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * ** *
14536 AAATCTCAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
261 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * *
14601 ACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAGGCCGTAAAAATGGCATTGGCATG
326 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
14666 GCAAAAAAATGAAGATATGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGC
391 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGC
14723 TTATCCTGTC
Statistics
Matches: 4968, Mismatches: 657, Indels: 353
0.83 0.11 0.06
Matches are distributed among these distances:
857 3 0.00
858 222 0.04
859 141 0.03
860 87 0.02
861 8 0.00
862 2 0.00
863 1 0.00
864 1 0.00
865 2 0.00
867 1 0.00
868 3 0.00
869 2 0.00
870 7 0.00
871 48 0.01
872 2 0.00
875 1 0.00
877 1 0.00
880 5 0.00
881 132 0.03
882 85 0.02
883 99 0.02
884 6 0.00
885 1 0.00
886 1 0.00
887 32 0.01
888 84 0.02
889 3 0.00
890 116 0.02
891 647 0.13
892 357 0.07
893 36 0.01
894 217 0.04
895 351 0.07
896 1179 0.24
897 266 0.05
898 137 0.03
899 70 0.01
900 83 0.02
901 2 0.00
903 1 0.00
906 1 0.00
909 3 0.00
912 2 0.00
913 1 0.00
914 1 0.00
915 2 0.00
916 2 0.00
918 1 0.00
919 3 0.00
920 50 0.01
921 139 0.03
922 75 0.02
923 156 0.03
924 13 0.00
925 43 0.01
927 3 0.00
929 1 0.00
931 1 0.00
933 2 0.00
935 27 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (895 bp):
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCG
CCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGGGG
GGGACCCGCTGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
GTAAGATCAGACTAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGC
ATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
TTCCGCGAATGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
Found at i:10506 original size:26 final size:26
Alignment explanation
Indices: 10477--10529 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10467 CGTTATCTTG
*
10477 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10503 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10529 G
1 G
10530 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12302 original size:26 final size:26
Alignment explanation
Indices: 12273--12325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12263 GTTGACTTAG
* *
12273 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12299 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12325 G
1 G
12326 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13827 original size:892 final size:889
Alignment explanation
Indices: 11374--14722 Score: 4018
Period size: 892 Copynumber: 3.7 Consensus size: 889
11364 GTTGACTTAG
* * * ** * *
11374 GCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGGTCGAGGGTTGTGGGTACACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGTGGGTGCACATGCTGGG
* * * *
11439 CTCAGGCATGTGCTGCTGTCGTAC-TT-TTTTTCACTTGGGG---CA--C-----CATCGTCGGA
65 CTCAGGCATGTGCTGGTG-C-CACATTGTTTTTCGCTCGGGGCACCATCCTGAAGCATCGTCGGA
* * *
11492 GAACCAGACCGACGGCATTGGGGTTCCGACGATTGGGGTGCGGGGGGGTGTGCGCACATGATGTG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGCGCACATGATGTG
* * *
11557 CGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTTATCAAACCTCGAGAACTCAC
* * *
11621 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAGGTGTCTCAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT
* * * * *
11686 GGGAACACTTTTTTAAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAA-TTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
11750 TGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
11815 ATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAACGAGTCATC
452 ATTTTAAAAAAAT-CTAAACCGTAAAAAGTTTCAAAAA-TCATGAAAAATAGAAAACGAGTCATC
*
11879 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGG
515 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
11944 CATTGGCATGGCAGAAATATGAAGTTGTGCCTAAACTCACCTACCACCCTATTGATCCATGACTT
580 CATTGGCATGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
*
12009 GCGCATCCTGTCCACCTACCACTCTATCGATCC-ACGGTTTACACATCCCGTCTCTCTGGTCGGC
645 GCGCAT-C---CCACCT----CTC--T-G-GCCGAC-G--T----A----G------T-G-C--C
* * *
12073 ATAGTACCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
677 ----CACCCG--T--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
12138 AGAT-TGAACTAGACTGAGGATTGCAGTAGCAAGATCGACAGCGCGCAGGAGGGGAACCGGTCGA
734 AGATCAGAAC-AGACCGAGGGTTG-TGTAGCAAGATAGA-AGCACGTAGG-GGGG-ACCGATCGA
*
12202 TCCCCGACTTGTGCATCCTGCCCCAACTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTG
794 TCCCCGACTTGTGCATCCTGCCCCAACT-GCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
*
12267 ACTTAGGCATACGGAGTTCATTCCTAGTCTAA
858 ACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * * ***
12299 GCATACGAAGTTCATTCCCAGTGTAAGATCAGATCAGGGTAAGGGTTGCGAGCATACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGTGGGTGCACATGCTGGG
* * * * * *
12364 CTCGGGCATGTGCTGGTGCCTCATT-TTTTTCGCTCAGGGCATCATCATCGGAGCATCGTCGGAG
65 CTCAGGCATGTGCTGGTGCCACATTGTTTTTCGCTCGGGGCACCATCCT-GAAGCATCGTCGGAG
* * *
12428 AACCTGACCGACGGTATT-GGG----G--G---GCGGGGC-A----GTGTGCGCTCATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGCGCACATGATGTGC
12478 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTT-ATCAAACCTCGAGAACTCACA
* *
12543 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
* * *
12608 GGGATAGTTTTTTCAAATGGTCACAAAATCCTGTACTCTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12673 GCATGCCAACAAGAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
12738 TTTTAAAAAAAATTTGAAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCT
453 TTTT-AAAAAAATCT-AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
12803 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12868 ATTGGCATAGTAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTG
581 ATTGGCATGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
*
12933 CGCATCCCACCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTTGTTTCGTCAGTTGGCTTAGGC
646 CGCATCCCACCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGC
** * * * *
12998 ATACGGAGTTCATTCTTAGTCTAAGATCGGATCAGACCGAGGGTTGTGCTAGTAGGATAGGAAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGTG-TAGCAAGATA-GAAGC
* * * * * *
13063 ATGTAGGGGGGACCTGATCGATCCTCGGCTTGTGCATCCTGCCCC-ACTGCCTAGTTGAGCACCC
774 ACGTAGGGGGGACC-GATCGATCCCCGACTTGTGCATCCTGCCCCAACTGCC-GGCTGAGCGCCC
* ** * *
13127 ACACGCTTGTTTTATGGCTTGACTTAGGCATACGGAGATCATTCCCAGTCTAA
837 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13180 GCACACAGAGTTCATTCCCAGTGTAATATCAGATCAGACCAAGGGTTGTGGGTGCA-ATTACTGG
1 GCATAC-GAGTTCATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGTGGGTGCACA-TGCTGG
* * *
13244 GCTCAGGCATGTGCTGGTGTCACTTTGTTTTTCGCTCGGGGCACCATCGCTGAAGCATCGTCAGA
64 GCTCAGGCATGTGCTGGTGCCACATTGTTTTTCGCTCGGGGCACCATC-CTGAAGCATCGTCGGA
* * *
13309 GAACCTGACCGACGGTATTGGGGTTCCGGCGATTGGGGGGC-AGGGGGTGTACGCACATGATGTG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGCGCACATGATGTG
* *
13373 CGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTT-TGCAAACCTTGAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTTAT-CAAACCTCGAGAACTCA
* * *
13437 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTACTGCCAGTAGCCATTAAAGTGTCTAAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAA
*** * * * *
13502 TGGGGACACTTTTTTCAAATGGTCACCCTAT-C-GATCCACTTTGACTTTTTAGTTGAATTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTG-TACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
13565 TATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
13630 AAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGT
450 AAATTTTAAAAAAAT-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
*
13694 CTTG-CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
13758 GCATTGGCATGGTAGAAATATGATGATATGCCCAAACCCACCTACCACCCTATTGATCCATGACT
579 GCATTGGCATGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACT
* * * * * *
13823 TGCGCATCCCGCCTCTCTGGCCGACGTAGTACCCCCCCGTCCGCTCATTTCGTCGGTTGGCGTAG
644 TGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * *
13888 GCATACGAAGTTCATTCCCAATCTAAGATCA-AACCAAACCAAGGGTTGTGGTAGCAAGATCAGC
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAA-CAGACCGAGGGTTGT-GTAGCAAGAT-AGA
* ** *
13952 AGCACATAGGGGGGACCCGA-CAGATCCCCGACTTGTGCATCCTGCCCCTCCGGCCGGCTGAGCG
771 AGCACGTAGGGGGGA-CCGATC-GATCCCCGACTTGTGCATCCTGCCCCAACTGCCGGCTGAGCG
* * *
14016 CCCGCTCGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
14072 GCATATGGAGTTCATT-CTAATTTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATA-CGAGTTCATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGTGGGTGCACATGCTGGG
* * * *
14136 CTCAGGCATGTGCTGGTGCCGCATTGTTTTTTGCCCGAGGCACCATAACC-GAAGCATCG-CTGG
65 CTCAGGCATGTGCTGGTGCCACATTGTTTTTCGCTCGGGGCACCAT--CCTGAAGCATCGTC-GG
* * *
14199 AGAACCTGACCGACAGCATTGGGGTTTCGACGATTGGGGGAGCGGGTGGGGTGTGCGCACATGAT
127 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGG-GCGAG-GGGGTGTGCGCACATGAT
14264 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTT-ATCAAACCTCGAGAACT
*
14329 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCA
*
14394 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
14459 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
384 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* ** *
14524 AAAATTTTAAAAAAATCTCAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
449 AAAATTTTAAAAAAATCT-AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
* * *
14589 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAGGCCGTAAAAAT
513 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
14654 GGCATTGGCATGGCAAAAAAATGAAGATATGCCTAAACCCACCTACCATCCTATCGATCCACGAC
578 GGCATTGGCATGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGAC
14719 TTGC
643 TTGC
14723 TTATCCTGTC
Statistics
Matches: 2111, Mismatches: 245, Indels: 164
0.84 0.10 0.07
Matches are distributed among these distances:
880 4 0.00
881 132 0.06
882 83 0.04
883 78 0.04
884 5 0.00
885 1 0.00
887 6 0.00
889 1 0.00
890 1 0.00
891 127 0.06
892 337 0.16
893 37 0.02
894 199 0.09
895 219 0.10
896 180 0.09
897 120 0.06
901 1 0.00
905 1 0.00
909 1 0.00
911 3 0.00
912 3 0.00
913 1 0.00
915 3 0.00
919 6 0.00
920 51 0.02
921 135 0.06
922 76 0.04
923 177 0.08
924 15 0.01
925 74 0.04
927 2 0.00
928 1 0.00
930 1 0.00
934 3 0.00
935 27 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (889 bp):
GCATACGAGTTCATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGTGGGTGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCACATTGTTTTTCGCTCGGGGCACCATCCTGAAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
TAAAAAAATCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
CCCACCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGTGTAGCAAGATAGAAGCACGTAGG
GGGGACCGATCGATCCCCGACTTGTGCATCCTGCCCCAACTGCCGGCTGAGCGCCCGCACGCTTG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19779 original size:21 final size:21
Alignment explanation
Indices: 19730--19779 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
19720 TGCCATCGTG
*
19730 CAAGGTCCGCACTTCAGCCTC
1 CAAGGTCTGCACTTCAGCCTC
19751 CAAGGTCTGCACTTCAGCCTC
1 CAAGGTCTGCACTTCAGCCTC
19772 CAAGGTCT
1 CAAGGTCT
19780 AGTTCTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.22
Consensus pattern (21 bp):
CAAGGTCTGCACTTCAGCCTC
Found at i:20833 original size:26 final size:26
Alignment explanation
Indices: 20804--20856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20794 GTTGACTTAG
*
20804 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20830 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20856 G
1 G
20857 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21827 original size:26 final size:26
Alignment explanation
Indices: 21791--21843 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21781 GTTGACTTAG
21791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21817 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21843 G
1 G
21844 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25246 original size:26 final size:26
Alignment explanation
Indices: 25217--25269 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25207 GTTGACTTAG
*
25217 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
25243 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25269 G
1 G
25270 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25483 original size:247 final size:248
Alignment explanation
Indices: 25033--25529 Score: 647
Period size: 247 Copynumber: 2.0 Consensus size: 248
25023 GCCCGCCTGC
* * ** * *
25033 CCACTCATTTCGTCGGTTGGCTTAGACATACGGAGTTTATTCCCAGTCTGAGATCGGACCAGATC
1 CCACTCATTTCGTCGGTTGGCATAGACATACGGAGTTAATTCCCAGTCAAAGATCAGACCAAATC
* * * *
25098 GAGGGTTGCAGCAATAGGATCAGTAGCAGGAAAAGGGGGACCCGATCGATCCCCGACTTACGCAT
66 GAGGGTTGCAGCAACAGGATCAGCAGCACGAAAAGGGGGACCCGACCGATCCCCGACTTACGCAT
** *
25163 CCTGCCCCTCTGGCTGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
131 CCTGCCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* * * * * * *
25228 TTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATTGGACCGGA
196 TCATTCCCAATCCAAGCATACGAAGTTCATTCCCAGTATAAGATTGGACCAGA
* * *
25281 CCACTCATTTCGTCGGTTGGCATAGGCGTACGGAGTTAATTCCCAGTCAAAGATTAGACCAAATC
1 CCACTCATTTCGTCGGTTGGCATAGACATACGGAGTTAATTCCCAGTCAAAGATCAGACCAAATC
* * * * * * *
25346 GAGGGTTGC-GACAACAGGATCGGCAGCACG-CAGGGGGGACCCGGCCGATCCCTGGCTTGCGCA
66 GAGGGTTGCAG-CAACAGGATCAGCAGCACGAAAAGGGGGACCCGACCGATCCCCGACTTACGCA
* ** * *
25409 TCCTGCCCCTCTGGCCAGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACATAG
130 TCCTGCCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAG
*
25474 TTCATTCCCAATCCAAGCATACGAAGTTCATTCCCAGTATAAGGTTGGACCAGA
195 TTCATTCCCAATCCAAGCATACGAAGTTCATTCCCAGTATAAGATTGGACCAGA
25528 CC
1 CC
25530 GAAGGTTACG
Statistics
Matches: 212, Mismatches: 36, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
247 132 0.62
248 80 0.38
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (248 bp):
CCACTCATTTCGTCGGTTGGCATAGACATACGGAGTTAATTCCCAGTCAAAGATCAGACCAAATC
GAGGGTTGCAGCAACAGGATCAGCAGCACGAAAAGGGGGACCCGACCGATCCCCGACTTACGCAT
CCTGCCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
TCATTCCCAATCCAAGCATACGAAGTTCATTCCCAGTATAAGATTGGACCAGA
Found at i:28139 original size:26 final size:26
Alignment explanation
Indices: 28103--28155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28093 GTTGACTTAG
* *
28103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
28129 GCATACAGAGTTCATTCACAGTGTAA
1 GCATACAGAGTTCATTCACAGTCTAA
28155 G
1 G
28156 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:29040 original size:26 final size:26
Alignment explanation
Indices: 29004--29056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28994 GTTGACTTAG
*
29004 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
*
29030 GCATACGGAGTTCATTTCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
29056 G
1 G
29057 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:29668 original size:895 final size:892
Alignment explanation
Indices: 25288--33324 Score: 9369
Period size: 896 Copynumber: 9.1 Consensus size: 892
25278 GGACCACTCA
* * * * * * *
25288 TTTCGTCGGTTGGCATAGGCGTACGGAGTTAATTCCCAGTCAAAGATTAGACCAAATCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
* * *
25353 GCGACAACAGGATCGGCAGCACGCAGGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCC
66 GCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCT-GCTTGCGCATCCTGCCCC
* * * **
25418 TCTGGCCAGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACATAGTTCATTCCC
130 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
25483 AATCCAAGCATACGAAGTTCATTCCCAGTATAAGGTTGGACCAGACCGAAGGTTACGGGTGCACA
195 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACA
* *
25548 TGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTATTTTCGCCCGGGGCACCATCGTCGGAGCAT
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TTTTCACCCGGGGCACCATCGTCGGAGCAT
* *** * ** *
25613 CGCTC-GAGAACCTGACCGGCAGCATTATTGTTCCGGCGATTGGGGGGAAGGGGGGTGTGCGCGC
324 CG-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCAC
* *
25677 ATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
388 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* **
25742 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTAATGCCAGTAGCCATTAAAGTG
453 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
25807 TCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
518 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* * ** * *
25871 TTGTTTTGTGCATGCTAACATTAATACAAGGATTACATCTACCAAGTTTAGGGCCAAAACTCCTT
583 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTT
* * *
25936 CTGAAAAAATTTTAAAAAAATTCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACA
647 -TTAAAAAATTTTAAAAAAA-TCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
**
26001 AGTCGTCTTGCCATGAAACTTTGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
710 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** * *
26066 AAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCC
775 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** ** * *
26131 ACGGCTTGCGCATCCCTTCTCTCTGGCCGATGTAGTGCCTGCCCG-TCGCTCG
840 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * *
26183 TTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGTGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A---GACC-A--GAT
** * *
26248 ACAGCAGTAGGATTGGACCGAGTGTTGCGGTAGCAGGATCGATAGCATGCAATGGGGGACCCGGT
58 -CA--AG--GG-TT-G--C----G--GC---AGCAGGATCGGCAGCACGC-AGGGGGGACCCGGT
* * * * * * *
26313 CGATCCCCGACTTGCACATCCTGCCCCTCTGGTCGACTGAGGGTCCGCACGCTCGTTTCATGGGT
104 CGATCCCTG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
26378 TGAC-T-----TA--G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTGTAAGATCG
168 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * * * *
26417 GACCGGACCGAGCGTTGTGGGTGCACATGCTGGGCTCGGGAATGTGTTGGTGCCACATTTTTTTT
233 GACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTT
** * * ** *
26482 TGCCCGGGGCACCATCGTAGGAGCATCGTCGGAGAACCTGACCGACGGCATTAAGGTGCCGACGT
298 CACCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG-
* *
26547 TTTGGGGGGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
362 ATT-GGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
26612 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
425 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
26677 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG-CACTTTTTTCAAATGGTCACAAAA
490 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
26741 TCCTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCAC
555 TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCAC
** * * *
26805 GTCTAATAAGTTTGGGGCCAAAA-TACCTTCTAAAAAAATTTTTAAAAAATTCTGAACCGTAAAA
619 GTCTACCAAGTTT-GGGCCAAAACT-CCTT-TTAAAAAA-TTTTAAAAAAATCCGAACCGTAAAA
* * * * *
26869 AGTTTCGAAAATCGTGACAAATAAAAAACGAGTTGTCTTGCCATGAAACGTCACATGAAGGCTTA
680 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* * *
26934 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGC
745 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
** * * *
26999 GCCTAAACCCACCTACCACCCTATCGATCCATAGCTTACGCATCCCGCCTCACTGGCCGACGTAG
810 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* *
27064 TGCCCG-TCG---G-TCA
875 TGCCCGCCCGCCCGCTCG
*
27077 TTT--TC-G-T--CTTA-GC-TGACGG-G-TCA-T--GAGTCT--GATCAGACCA-A--AGAGGG
1 TTTCGTCGGTTGGCTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCA-AGGG
* * ** * * * *
27124 TT-TGGCAAGTAGGATCGGCAG-AC-C--TCGTG-TCC-G--GA-----GCTTGTGCATCCT-AC
64 TTGCGGC-AGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCTGCTTGCGCATCCTGCC
* * * * *
27174 CATCTGGTCC-GCTGAGCACCCGCACGC-CTTTTTGGTGAGTTGACTTAGGCATA-GGAGTTCAT
128 CCTCTGG-CCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * * *
27236 TCCCAGTCT-AGCGTGTGAAGTTCCTTCCTAGTGTAAGAT-GAGACCAGA-CGAGTGTTGC-GGT
191 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG-GACCAGACCGAGGGTTGCGGGT
* * *
27297 GCACATGCT-GGC-CAGGCATGT-CTGGTGCGGCA---TTTTTCACCCGAGGC-CCAT-GTC-GA
255 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGA
* * * *
27353 G-ATC-ACGGAGAACCTAACC-G-GGCATTAGGGTTCCGACGATT-GGGGGG-TGGGGGTGTGCG
320 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCG
*
27412 CACATGATGTTGAGATGGGTGCTCGGTACTTGGCCCTTATTATTGGCCCCCCTATCCCTCATCAA
385 CACATGATG-TGCGATGGGTGCT-GGTACTTGGCCCTTA-TATTGG-CCCCCTATCCCTCATCAA
* * *
27477 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGACAT
446 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * *
27542 TAAAGTGTCTGAAATGGGGAAACATTTTTCAAATGGTTACAAAATCCTATACACTTGGAGTTTTT
511 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* * *
27607 AGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAA
576 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAA
* * * * * *
27672 AATCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGATTCAAAAATCTTGAAAAATA
640 ACTCCTT-TTAAAAAATTTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
27737 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACA
703 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
27802 AGCCATAAAAATGGCATTGGGACAT--CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
768 AGCCATAAAAATGGCATT-GG-CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
27865 TATCGATCCATGGGTTGTGCATCCTGCCTCTCTGGCTGGCGTCGTGCCCGCTCGCCTGCTCG
831 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * **
27927 TTTCGTCGGTTGGCTTCGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
* * * * * * ** **
27992 GTGGTAGCAGGATCAGCAGTAGGTAGGGGGGACCCGACCGATCCTCAACTTGCGCATCCTGCCCC
66 GCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCC-CTGCTTGCGCATCCTGCCCC
* * * ** *
28057 TTTGGCCGGCAGAGCGCCTGCACGCTCGTTTTATGTGTTGACTTAGGCATACGGAGTTCATTCCC
130 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * **
28122 AGTCTAAGCATACAGAGTTCATTCACAGTGTAAGATCAGACCAGACCGACAGTTGCGGGTGCACA
195 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACA
* * * ** * * * * * *
28187 TGTTAGGCTAGAACATCTCCTGGAGCCGCTTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATC
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATC
* * * *
28252 GTCGGAGAACTTGACCGGTGGCAATGGGGTT-CGACAATTGGGGGCGGCGGGGGGGGGGGTTGTG
325 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGG-GGC-----GGGGGG-TGTG
* * * * * *
28316 CACACATGATGTACGATGGGTGTTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTAATCAATC
383 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
28381 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
448 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
28446 AACTGTTTGAAATGGGGATACTTTTTT-AAATGGTCAAAAAAT-CTGGTACACTTCGAGTTTTTA
513 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT-GTACACTTCGAGTTTTTA
* *** * * *
28509 GTTGAATTTTTTTACACATGTCGACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
577 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA
* * * * *
28574 CTCTTTTTGAAAGAATTTTAAAAAAATATCGAACCGTAAAAATTTTCAAAAATTGTGAAAAATAG
641 CTCCTTTT-AAAAAATTTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
*
28639 AAAACGAGTCGTCTTGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
704 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** ** * *
28704 GAGATAAAAATGGCATTTTCATGGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTAT
769 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
28769 CGATCCACGGCCTGCGCATCCCGCCTCTCTGACCGGCGTAGTGCCCGCACGCCCGCTCG
834 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * *
28828 TTTCGGCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
* * * * * * *
28893 GCGGCAGTAGGATTGGTAGCACGTAGGGGGCACCCAGTCGATCCTCTGCTTAG-GCATCCTACCC
66 GCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCC-CTGCTT-GCGCATCCTGCCC
* *
28957 CTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
129 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
29022 CAGTTTAAGCATACGGAGTTCATTTCCAGTGTAAGATCGGACC-GAACCGAGGGTTACGGGTGCA
194 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCA
* * * * *
29086 CATGCTTGGCTCGGGCATGTGTTGGTACCGCATTTTTTTTCACCCGAGGCACCATCATCGGAGCA
258 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCA
* * * * *
29151 TCATCGGAGAATCGGATCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCACAC
323 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCAC
* * *
29216 ATGATGTGTGATGGGTGCTTGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
388 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
***
29281 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTTGGTAGCCATTAAAGTG
453 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
29345 TCTTAAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTTGCTGAA
518 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* *
29410 TGTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT
583 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTT
* ** *
29475 TTAAAAAGATTTTAAAAAAATCCAGAACCTTAAAAAGTTTTGAAAATCGTGAAAGATAGAAAACG
647 TTAAAAA-ATTTTAAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
29540 AGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATA
710 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
29605 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCC
775 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
29670 ATGGCTTGCGCATCCCGCTTCTCTGGCCGGCGTAGTGCCCGTCTGCCCGCTCG
840 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * * * *
29723 TTTCGTCGATTGGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATTAGACCGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
* * * * *** * **
29788 GCAGCAGTAGGATCGACAGCACGCAGGGGGGGATCCAACCGATTCCC-GACTTACTTATCCTGCT
66 GCGGCAGCAGGATCGGCAGCACGCA-GGGGGGACCCGGTCGA-TCCCTG-CTTGCGCATCCTGC-
* * * *
29852 CCC-CTGGCCGGCTGCGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
127 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
29916 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTAGACTGAGGGTTGCGAGTGC
192 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGC
* *
29981 ACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTTTTCACCCGGGGCACCATCG-CTGGAG
257 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTC-GGAG
* * * * * *
30045 CATCGTCGGAGAATCTGACCGACAGCATTGGGGTTTCGACGATTGGGGGCG-GGGGGGTGTGCAC
321 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGC
* * * * *
30109 ACATGATGTGCGATGGATGCTGGTACTTGGCACTTATATTGGCCCCGTATCCTTCGTCAAACCTC
386 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
30174 AAGAACTCACACCCCCTGAAAGAACGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
451 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
30239 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGATTTTTTAGCTG
516 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* *
30304 AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTCAAAACTCC
581 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCC
* * *
30369 TTCTGAAAAAATTTTAAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCGTGGAAAATAGAAAA
645 TT-TTAAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
30434 CGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
708 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
**
30499 TAAAAATGGCATTGGCATTACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC--T--AT
773 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
30560 ------C-T-----T---GCCTCTCTGGCTGGCATAGTGCCCGCCCGCTCGCCCGCTCG
838 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCTCG
* * ** * * *
30604 TTTCCTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCTGACCGAA-GGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AAGGGT
** * * * * * * *
30668 TATGGTAGTAGGATCAGCAGCACGCAAGGGGGGACTCGGTCGATCCCGGCTTGCGCATACTACCC
65 TGCGGCAGCAGGATCGGCAGCACGC-AGGGGGGACCCGGTCGATCCCTGCTTGCGCATCCTGCCC
* *
30733 CTCTGGCCGGCTGAGCGCCCG-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCC
129 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * * * * *
30797 TAGTCTAAGCATACAAAGTTCATTCCTAGTGTAAGATCAGACCAGATCAAGGGTTGCGAGTGCAC
194 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCAC
* * * *
30862 ATGCT-GGCTCGGCCATGTGCTGGTACCGCAATTTCTTTTCACCCGGGGCACCATCGCCGGAGCA
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTTTTCACCCGGGGCACCATCGTCGGAGCA
* * * * * *
30926 CCG-CTGGAGAACCTGACTGGCAGCATTCGAGTTCCGACGATTGGGGGGGCGAGGGGTGTGCGCA
323 TCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCA
* * * *
30990 CATGATGTGCAATGGGTGCTGGTACTTGTCCCCTATATTGGCCCCCTATCCCTCACCAAACCTCG
387 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
31055 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGT
452 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
**
31120 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCCTGTTTTTAGCTGA
517 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
*
31185 ATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CT
582 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCT
31249 TTCTGAAAAAATTTTAAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAA
646 TT-T-AAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
31313 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
708 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
31378 TAAAAATGGCATTGGTACGGAAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGAT
773 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
31443 CCACGGCTTACGC-TACCTGCCTCTCTGGCCGGTGTAGT----GCCCACCCGTTCG
838 CCACGGCTTGCGCAT-CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * * *
31494 TTTCATCAGTTGGCTTAGGCATACGGAGCTCATTCCCAATTTAAGATCAGACCAGACTGAA-GGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCAAGGGT
*** * * * * * *
31558 TATAGTAGCAGGATTGGCAGCACACAGGGGGGATCCGGTCGATCCCTGGCTTGCACATTCTGCCC
65 TGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCT-GCTTGCGCATCCTGCCC
* *
31623 CTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCC
129 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
31688 TAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACTAGACCGAGGGTTGCGAGTGCAC
194 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCAC
* * ** * * * *
31753 ATGCTAGGCTCAGGCATGTGCTGGTATCGCA-TTTTTTTCACCTGTGGCCCCATCGCCAGG-GCA
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTC-GGAGCA
* * *
31816 TCGTCGGAGAACATGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGGTGTGCGCA
323 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCA
* *
31881 CATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
387 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
31946 AGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
452 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
32011 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACCTGTACACTTCGAGTTTTTAGCTGA
517 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * * * * *
32076 ATTTTTTTCTACATACCAACCAAAATACAAGGATCACGTCTACCAAGTTCGTTGCCAAAACTCCT
582 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCT
* * * * *
32141 TCTGAAAAAATTTAAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAAT
646 T-TTAAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
32206 GAGTCAG-CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCA
709 GAGTC-GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
32270 TAAAAATGGTATTGGCATGGCAAAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGAT
773 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
32335 CAACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGTCCGCCCGCCCGCTCG
838 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* ** *
32390 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAGACCAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
** * * * ** * * **
32454 GCGATAGCAAGATCGACAGCACGTAGGGGGG-CCCGACCGATCCCCGACTTGCTCATCCTATCCC
66 GCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCTG-CTTGCGCATCCTGCCCC
** * * * *
32518 TCTGGTGGGTTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
130 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
32583 AGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCTGGTGCACA
195 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACA
* * * ** **
32648 TGCTGGGCTTGGCCATGTGCTGGTGCCACATTTTTTTGTTGCCTAGGGCACCA---TC---G---
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTT-TCACCCGGGGCACCATCGTCGGAGCAT
** * * * *
32704 C--CGGAGAACCTGATAGGCGGCATT-GGGTTCCCAGCAATTGGGGGGGCAGGGGGTGTGCGCAT
324 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGGCGGGGGGTGTGCGCAC
* *
32766 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTGTTGGCCCCCTATCCCTCATCAAACCTCGA
388 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
32831 GAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCTGTAGCCATTAAAGTG
453 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
32896 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGAACACTTTGAGTTTTTAGCTAAA
518 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* ** * *
32961 TGTTTTTACGCATGCCAAGAAAAATACAAGGATCACGTCTACTAAGTTTGCGGCCAAAAC-CCTT
583 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCC-T
* *
33025 TTTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
646 TTT-AAAAAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
33090 GAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCAT
709 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * **
33155 GAAAATGGCATAGGCATGGCAGAAATATGAAGATGTGTTTAAACCCACCTACCACCCTATCGATC
774 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
33220 CACGGCTTGCGCATCCCGCCTCTCTGGCAGACGTAGTGCCCGCCCGCCCGTTCG
839 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
*
33274 TTTCGTCGGTGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
33325 TTGGACCGAG
Statistics
Matches: 6117, Mismatches: 801, Indels: 458
0.83 0.11 0.06
Matches are distributed among these distances:
835 1 0.00
836 31 0.01
837 12 0.00
838 1 0.00
840 20 0.00
841 12 0.00
842 23 0.00
843 9 0.00
844 112 0.02
845 308 0.05
846 13 0.00
847 18 0.00
848 3 0.00
849 4 0.00
850 8 0.00
851 5 0.00
852 27 0.00
853 1 0.00
854 3 0.00
855 10 0.00
856 12 0.00
857 8 0.00
858 14 0.00
859 12 0.00
860 26 0.00
862 5 0.00
864 10 0.00
865 3 0.00
866 18 0.00
867 6 0.00
868 1 0.00
870 2 0.00
871 2 0.00
874 3 0.00
875 4 0.00
877 22 0.00
878 23 0.00
879 323 0.05
880 323 0.05
881 134 0.02
882 26 0.00
883 34 0.01
884 516 0.08
885 60 0.01
886 6 0.00
887 10 0.00
888 12 0.00
889 20 0.00
890 183 0.03
891 397 0.06
892 212 0.03
893 7 0.00
894 253 0.04
895 688 0.11
896 714 0.12
897 38 0.01
898 479 0.08
899 18 0.00
900 9 0.00
901 596 0.10
902 115 0.02
903 6 0.00
904 16 0.00
905 17 0.00
906 16 0.00
908 2 0.00
909 2 0.00
910 1 0.00
912 1 0.00
913 1 0.00
916 3 0.00
918 1 0.00
921 17 0.00
922 69 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCTGCTTGCGCATCCTGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCG
TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTTTAA
AAAATTTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
Found at i:29929 original size:26 final size:26
Alignment explanation
Indices: 29900--29952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29890 GTTGACTTAG
29900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
29926 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29952 G
1 G
29953 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31722 original size:26 final size:26
Alignment explanation
Indices: 31670--31722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31660 GTTGACTTAG
*
31670 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
31696 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
31722 G
1 G
31723 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:32600 original size:26 final size:26
Alignment explanation
Indices: 32564--32616 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32554 GTTGGCTTAG
*
32564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
32590 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32616 G
1 G
32617 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:40235 original size:26 final size:26
Alignment explanation
Indices: 40196--40274 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
40186 GTTGACTTAG
40196 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
*
40222 GCGTACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
40248 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
40274 G
1 G
40275 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:40654 original size:131 final size:131
Alignment explanation
Indices: 40420--40682 Score: 517
Period size: 131 Copynumber: 2.0 Consensus size: 131
40410 TGAGGGGGGC
40420 AGGGGGGTGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAAC
1 AGGGGGGTGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAAC
40485 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTT
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTT
40550 A
131 A
40551 AGGGGGGTGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAAC
1 AGGGGGGTGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAAC
*
40616 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTT
40681 A
131 A
40682 A
1 A
40683 ATGGGGACAC
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (131 bp):
AGGGGGGTGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTT
A
Found at i:41267 original size:26 final size:26
Alignment explanation
Indices: 41231--41283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
41221 GTTGACTTAG
41231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
41257 GCATAGGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
41283 G
1 G
41284 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:42150 original size:26 final size:26
Alignment explanation
Indices: 42114--42166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
42104 GTTGACTTAG
*
42114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
42140 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
42166 G
1 G
42167 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:43037 original size:26 final size:26
Alignment explanation
Indices: 43008--43060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
42998 GTTGACTTAG
* *
43008 GCATATGGAGTTTATTCCCACTGTAA
1 GCATACGGAGTTCATTCCCACTGTAA
*
43034 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCACTGTAA
43060 G
1 G
43061 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTGTAA
Found at i:44434 original size:896 final size:895
Alignment explanation
Indices: 40558--55553 Score: 10919
Period size: 896 Copynumber: 16.6 Consensus size: 895
40548 TTAAGGGGGG
* * *
40558 TGGGTGCTGGTACTTGGCCCTTATAATGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
40623 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
40688 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATATTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
40753 AAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * *
40818 TTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGACTCGTCTCGC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
40883 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
40948 GGCATGGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCACTCTATCGATCCACGACTTGCGC
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
41013 ATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * * * * **
41078 TGAAGTTCATTCCCAGTCTAAGATCAAACT-GAATAGAGGGTTGTAGTAGTAGGATTGGTAGC-C
520 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACT-GAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * *
41141 GCAGGGGGGGACCCGATCGATCCCCAGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGTGCCCGC
584 GCA-GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
41206 ACGCTTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTC
648 ACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
41270 ATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCAGGTGCACATGCTGGGCTTGGGCATGTGC
712 ATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* * * ** * *
41335 TGTTGCCACATTTTTTTTCGTCTAGGGCACCATCGCCGGAGCATCGCCGGAGAATCTGACCGACC
777 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
* * * * * * *
41400 GTATTAGGGTTCCGGTGATTGGGGGGCAGCGGGGATATGCGCACATGATGTGTGG
842 GCATTGGGGTTCCGATGATTGGGGGG-AGGGGGGGTGTGCGCACATGATGTGTGA
* *
41455 TGGGTGCAGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
41520 CCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATTGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
41585 GACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAATTTTTAGCTGAATATTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
41650 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAGTT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* * *
41715 TT-AAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
41779 CATGACACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
41844 TGCATGGCAGAAATAGGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
41909 ATCCCACCTCTCTGGCCGGCGTAGTGCTCGCCCCCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
41974 TGGAGTTCATTCCCAATTTAAGATCGGA-TCGGACCAAGGG-T-T-GCAGC---A--G-CA--TC
520 CGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
* ** * * *
42027 -CAGGGGGGACCCAATAGATCCCCCGCTTGC-CATCCTGCCCCTCTGGCTGGCTGAGCACCCGCA
584 GCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
42090 AGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
649 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*
42155 TCCCAGTGTAAGATCAGACCAGACCGAGGGTTGTC-GGTGCACATGCTGGGCTCGGGCATGTGCT
714 TCCCAGTGTAAGATCAGACCGGACCGAGGGTTG-CGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
42219 GGTGCCGCATTTTTTTTCGCCCGAGGCACCATCACCAGAGCATCGCCGGAGAACTTGATCGACGG
778 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
* * *
42284 CATTGGGGTTCCGACGATTGGGGGTGTGGGGGGGTGTGCGCACATG-TGTGCGA
843 CATTGGGGTTCCGATGATTGGGGG-GAGGGGGGGTGTGCGCACATGATGTGTGA
*
42337 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
42402 CCCTTAAAGGGCATTTGAGATATTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
42467 GACACTTTTTTCAAATGGTCACAAAATCCTGTGCGCTTCGAGTTTTTAGCTAAATTTTTTTGCGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
42532 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTG-AAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* *
42596 TTAAAAAAATCTCGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
42661 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
42726 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGC
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
42791 ATCCCGTTTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * ** * *** * * *
42856 AAGAGTTCATT-CTAGTCTAAGATTAGACCGGACTGAGGGTTACAGTAGTAGGATTGACAGCACG
520 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * *
42920 TAGGGGGGACCCGGCTGATCCTCGGCTTGGGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
585 CAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
42985 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCACTGTAAGCATACGGAGTTCATT
650 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
43050 CCCAGTGTAAGATCAGACCGGACCAAGGGTTGGGGGTGCACATGCTGGGCTCGGGCATGTGCTTG
715 CCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
43115 TGCCGTATTTTTTTCCGCCCGGGGCACCATTGCCGGAGCATCTCCAGAGAACCTGACCGACGGCA
780 TGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA
** * * *
43180 TTGGGGTTCCGACAATTTGGGGGGGCGGGAGGGGGGGTGTGCACACATAATGTGCGA
845 TTGGGGTTCCGATGA-TT----GGG-GGGAGGGGGGGTGTGCGCACATGATGTGTGA
** *
43237 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGTATCCCTCATCAACCCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
43302 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTGAAGTATCTGAAATGAG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
43367 GACACTTTTTTCAAATGGTCACAAAACCCTGTACACATT-GAGTTTTTAGCTGAATTTTTTTATG
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
43431 CATGCCAATAAAAGTGCAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * * *
43496 TTTTAAAAAATCTCGAACCATAGAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTG
260 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
43561 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
43626 TGG-AGTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
390 TGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
43690 GCATCTCGCCTCTCTGGCTGCGTAGTGCCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
454 GCATCCCGCCTCTCTGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
43755 GA-GGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGATGGTTATGGCAGCAGGATCGGCAGCA
519 -ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * ** *
43819 CGCAAGGGGGAACCCGACCAATCCCCGGCTTGCGCATCCTGCTTCTCTGGCCGACTGAGCGCCCG
583 CGC-AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
43884 GACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA-TAT
647 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-T
* ** * * *
43948 CATTCCTAGTGTAAGATTGGACCGGATCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTC
711 CATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * *
44013 CTGGTACCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCGTCGCCCGAGAACCTGACCGAC
776 CTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * **
44078 GGCATTGGGGTTCTGAAGATTCGGGGGGAGGGGTGGGTGTGCGCACATGATGT-ACA
841 GGCATTGGGGTTCCGATGATT-GGGGGGAGGGG-GGGTGTGCGCACATGATGTGTGA
* *
44134 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCACA-C
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
44198 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
44263 TACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
44328 ATGCCAACAAAAATACAAGGATCACGTGTACCAAGTGTGGGGCAAAAACTCCTTCTAAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * *
44393 TTAAAAAAATCTTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
44458 CATGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
44523 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGC
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * *
44588 ATCCCGCCTCTCTGGCCATCCTAGTGCCC-CCCTCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * *
44652 CGAAGTTCATTCCCAATCTAAGATCGTA-TCAGA-TCGAGGGTTGCGACAGCAGGACCAACAGCA
520 CGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACT-GAGGGTTGTGGCAGCAGGATCGACAGCA
* * * ** * * ** **
44715 TGTAGGGGGGACTCGACCGATCCCCAACTTACGCATCCTACCCCTCTGGCCGATTGAGCGCCTAC
583 CGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
44780 ACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * **
44845 TTCACAGTGTAAGATCAAATCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCAAGCATGTGCT
713 TTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * ** * ** * *
44910 GGTGTCGTAATTTTTTT-GCCTTGGGCTCGTTTCGCCTGTTG-GCTTAGGCATACGGAGTTAATT
778 GGTGCCGCATTTTTTTTCGCCCGGGGCAC-CATCGCC-G--GAGCAT-CGC---CGGAG--AA--
* * ** * *** *
44973 CCCAGTCTAAGATCTGATCGG-ATAGAGGGCTGTGGTAGCAGGATTGGCAGCACACAGAGGGGGT
831 --C---CT--GA-CCGA-CGGCATTG-GGG-T-T--CCG-ATGATTGG--G--GGGAGGGGGGGT
* *
45037 CG-GAC-CGATCCTCGA-CT-TGA
877 -GTG-CGC-A-CAT-GATGTGTGA
* * *** * ** * * ** * * ** *
45057 -GGATCCTGCCCCTGTGGCCGGC-T-GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
1 TGGGTGCTGGTACT-TGGCC--CTTATATTGGCC---C-C-C-TATC----CCTCA-TCAAACCT
** ** ** * **
45119 ACGA-AGTTCATTCCTGGTCTAAGCATATGGAGTTCATTCTGAGTGCAAGATCGGATCAGATCGA
52 -CGAGAACTCACACC--CCCTTA--A-A--GAG--CA-T-T---TG--AGAT----T-TTA-C-A
* ** * * ** * * **
45183 GGGTTGCTG---GT-GCACA-TATTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCACCT
93 GGTTTGCTGCCAGTAGC-CATTAAAGTG-TC-TG-AAATG--GG-G--ACA--CTTTTTTCAAAT
* * * * *** * * *
45243 GGGGCAC--CATCTTCGTAGCATCGTTGGAGAACCTGACCGATGGCATTGGGGTTTCGGTGATTG
147 -GGTCACAAAATCCT-GTA-CA-C-TTCGAG-TTTTTA--GCT-G-AAT----TTT---T--TT-
* * * ** ** * * ** * * * * *
45306 GGGGGCGGGGGGGTGTGCGC-ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA-TATTGGC
192 --GTGC--------ATGC-CAACA-AAAAT-ACAAGGAT-CACGT-C-T--ACC-AAGTGTGGGG
*** * ** ** * * * * * * * * *
45369 CCCCTA-TCC--CTCATCAAA-CCTCAAGAACTCAC-ACCCCCTTAAAAGGCATTT--GAAAT-T
238 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA--ACCGTAAAAAG--TTTCAAAAATCA
* ** * ** * * * * * ** * ** *
45426 TTACAAGTTTGCTACCAGTAGCCATTAATGTGTCACAAAATCCTGTACACTTTG-AGTTTTTAGC
299 TGA-AAAATAGAAAAC-G-AGTC-GT-CT-TGCCATGAAA--CT-T-CAC-ATGAAGGCTTAAG-
* * * * ** * ** *
45490 AGA--ATT-T-T--TTTGTGCAAGCCATACAAAAT-ACA--GG-ATTAC-G-ACTACCAAGTTTG
352 GGACCATTGTATGAATT-TACAAGCCATA-AAAATGGCATTGGCATGGCAGAAATATGAAG-AT-
* * ** ** *** *** * * **** ** *****
45543 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC-CGAACCATAAAAAGTTTCAAAAATCA
413 GTGCCTAAAC-CCACCT---ACCACCCT--ATCGATCCACG--GCTTGCGCA-TCCCGCCTCTC-
***** ** ** * * ** * * **
45607 T-GAAAAATAGAAAACAAGTCATCTTGCCATGAAAC--TTC-ACATGAAGGCTTAAGGGACCAT-
468 TGGCGGCGTAG--TGCCCG-C--C-CGCC-CG-CTCGTTTCGTC-GGTTGGCTT-A-GG--CATA
* * ** * * * * * ** **** * * * *
45667 TGTA-TGAATTTACAAGCCATAAAAAT-GGCATTGGCACAACAAAAATAT-GAAG-ATG-T-GCC
520 CGGAGTTCA-TTCCCAGTC-T-AAGATCGG-ACTGG-AC-TGAGGGTTGTGGCAGCAGGATCGAC
* * ****** * * * * * *
45726 TA-AACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCT-CCTCTCTGCCCGGCGTAAT
579 -AGCACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGC-TGA-
* * * * * *
45789 GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAATCTAAGATC
640 G--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--C
* * * * * * * * * **
45854 AGAC-CAGACTGAGGGTT-ACGGTAGTAGGATC-GACAGCA-CGCAGGGGGGGACCCGGCCGAT-
701 ATACGGAG-TTCA---TTCCCAGT-GTAAGATCAGACCGGACCG-A-GGGTTG---CGG--G-TG
* * ** * ** * * ** *
45914 C-CCTAGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCACCCACATGCTCATTTCG--TGGGTT
753 CACAT-GC-TGGGC-T-C-G-GGC-AT-GT-G-CTG-G-TGCCGCAT-TTTTTTTCGCCCGGG--
* * * * * * * ** * *
45976 GACTTAGGCAT--ACGTAGTTCAT-TCC-TAG--TCTAAGCATAAGG-AGTT--TGTTCCCAGTG
803 G-C--A-CCATCGCCGGAG--CATCGCCGGAGAACCTGA-CCGACGGCA-TTGGGGTT-CC---G
* * **** ** * * * *
46032 TAAGATCAGACCAGACCGAGGGT-TACAGGTGCACATGCTGGGCTTGA
856 -ATGAT-TGGGGGGAGGGGGGGTGT----GCGCACATGATGTG--TGA
* * ** * * ***
46079 -GAATGTGCTGG----T-GCCACATT-TTTTTTCGCCCGAGAAC-C-T--AACCTGCG-GCATTA
1 TG--GGTGCTGGTACTTGGCC-C-TTATATTGGCCCCCTATCCCTCATCAAACCT-CGAG-A--A
** *** * * * * * ** * * * *
46132 GGCTTCTA-A--CGATTGGGGGGGCGAGTGGGGGTGTGCCCACATG-ATG-TGCGAATGGT-GCT
58 --C-TC-ACACCCCCTT-AAAGAGC-ATTTGAGAT-T--TTACAGGTTTGCTGC-CA--GTAGCC
* ** * * * * ** * ** * ***
46191 AGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC-ACCCCCT-T
111 ATTAAAGT-G-TCTGAAATGGGGACACT-T---TTTTCAAA---T--G--GTCACAAAATCCTGT
* * * * * ** * ** ** *
46253 AAAGAGCATTTGGGATTTTA-C--AAGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAAAGGGG
163 --ACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAA---AAT-ACAA--GG
* * ** * * ** ** * *** *
46314 A-CACTTTTTTCAAATGAT----CACAAAAC-CATGTACACT-TCAAGTTTTTAGCTGAATTTTT
216 ATCACGTCTACCAAGTG-TGGGGC-CAAAACTCCT-T---CTGAAAAAATTTTA---AAAAAATC
* * * ** * ** *** * * *
46372 TGTGCATGCC-AAAAAAAATACAAGGATCATGTCTGCCAATTTTGGGGCCAAAAC---TCTTTTT
272 T-CG-A-ACCGTAAAAAGTTTCAAAAATCA----TG--AAAAAT--AG--AAAACGAGTCGTCTT
** * * ** * ** * **
46433 G--AAAAAATTTTCA-A-AAAATCTT---GAACC---GTAAAAAGTTTCAAAAATCATGAAAAAT
324 GCCATGAAA-CTTCACATGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCAT-AAAAAT
* * * * * * * ** ** ***
46488 AGAAAACAAGTGGTCTTGCCATGAAACT-TCACATGAAG-GCTTACGAGA-CCATTGTATGAATT
385 -G---GC-ATTGG-CATGGCA-GAAA-TATGA-A-GATGTGCCTA--A-ACCCA-CCTACCACCC
** * ******** * * * ** * *
46550 TA-CAAGACATAAAAATGGCATTG-GCATGAAAAAAATATGAAGATGTGCCTA-AACCC-ACCGA
436 TATC--G--AT--CCACGGC-TTGCGCATCCCGCCTCTCTG--G-CG-GCGTAGTGCCCGCCCGC
* * * *** * * * * * * *
46611 CCAC-CCTATCGATC-CACGGCTT--GCACATCTCG-CTTC-TCTAGCCAG-CTTAG-TGCCCGT
490 CCGCTCGTTTCG-TCGGTTGGCTTAGGCATA-C-GGAGTTCAT-T-CCCAGTCTAAGAT--CGGA
* * ** ** * **** * *
46668 CCGCCCG-CT-CGTTTTGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA
548 CTG---GACTGAGGGTTGT-GG-CAGC--AGG-AT-CGACAG--CA--CGCAG-GGGGGACCCGA
** * * * ** *** * ** * *
46730 CCAGA-CCAAGGGTTACAGTAGTAGGATAGGTAGCACGTAGGAGGGGACCCGACCGAACCC-CAG
599 CC-GATCCCCGGCTTGC-GCA-T--CCT--GCCCCTC-T-GG-CCGG--CTGAGCG--CCCGCA-
* ** * * ** * * *
46793 CTTGAGCATCCTACCCCTCTGGCCGACTGAGCCCCCGCACACTCATTTCGTGGGTTGACTTAGGC
649 C----GC-TCGT-TTCGT-GGGTTGACTTAG-----G--CA-T-A---CG-GAGTTCA-TT---C
* * * * * *
46858 AAACAGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCGAATGTAAGATCAGACGGGATCG
690 ---C-CAG-T----------CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCG
* * ** **
46923 AGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCTACATTTTTTTTCGCCTAGGGC
740 AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGC
* * * * * * *
46988 ACCAACGCCGGAGCATCGCCAGAGAACCTGACCGGCCGCATTAGGGTTCCAACGATTGGGGGGGC
805 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATT-GGGGGG-
* *
47053 GGGTGGGGGTGTGTGCACATGATGTGTGA
868 AGG-GGGGGTGTGCGCACATGATGTGTGA
* *
47082 TGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
47147 CCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
47212 GACACTTTTTTCAAACGGTCACAAAATCCCGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
47277 TTGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
** * ** ** *
47342 AAAAAAAAATCTTGAACATTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCGTCTTGC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
47407 CCTGATACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * ** *
47472 GGCAAGGTAGAAATATGAAGATGTGCCTAAACCCA-CTAACCATCCTATCGATCCATTGCTTGCA
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCG
* * *
47536 CGTCCCGCCTCTCTGGCCGGCCTAGTGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCAT
455 CATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** ** * ** *
47601 ACGGAGTTCATTCCCTA-TCTAAGATCGGGCCAGACCAAGGGATGCAGTAGCAGGATCGACAGCA
519 ACGGAGTTCATTCCC-AGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * * *
47665 CATCGGGGGGGA-CCAAGTCGATCCCCGGCTTGC-CATCTTGCCCCTCTAGCCGGCTGAGCGCCC
583 C-GCAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
47728 GCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGAAGTT
646 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * * *
47793 CATTCCCAGTGTAAGATCGGATCGGATCAAGGGTTACAGGTGCACATCCTGGGCTCGAGCATGTG
711 CATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
** * * *
47858 CTGGTGCCATATTTTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGA
776 CTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* **
47923 CGGCATTGGGGTTCCGATGACTGGGGGG-GCGGGGGGTGTGCGCACATGATGTGCAA
840 CGGCATTGGGGTTCCGATGATTGGGGGGAG-GGGGGGTGTGCGCACATGATGTGTGA
*
47979 TGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCACAC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACAC
* * *
48043 CCCCTTAAGGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
48108 GGACACTTTTTTTAAATGGTCACAAAATCCCGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTG
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
48173 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
* ** *
48238 TTTAAAAAAATCGCGAACATTAAGAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
260 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
48303 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
48368 TGGCATGGCAGAAATATGAAGATGTGCCTAAACTC-CCTACCACCCTATCGATCCACGGTTTACG
390 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
48432 CATCCCGCCTCTCTTGTCGGTGTAGTGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCAT
455 CATCCCGCCTCTC-TGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
48497 ACGGAGTTCATTCCTACTATAAGATAGGA-TCGGACAGAGGGTTGCGACAGCAGGATCGACAGCA
519 ACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * * * *
48561 CGTAGGGGGGACGCGATCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCAGCTGAGTGCCCGC
583 CGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
48626 ACACTCGTTTCGTTGGTTGAC-T-----TA--G-G--------CA---T--G----CGGAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * *
48665 TTCCCAGTGTAAGATCAGACCAGAACGAGGGTTACGGGTGCACATGTTGCGCTCGAGCCTGTGCT
713 TTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * **
48730 GGTGCCGTATTTTTTTTCGCCCAGGGCACCAT--------CAT---CGGAGAACTTGACCGGTGG
778 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
* * * *
48784 CATTGGGGTTTCGGTGATTGGGGGGCTGGGTGGGGGGTGTGCGCATATGATGTGTGA
843 CATTGGGGTTCCGATGATT-GGGGG--GAG-GGGGGGTGTGCGCACATGATGTGTGA
*
48841 TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCGTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
48905 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATGT-AAGTGTCTGAAATGA
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGG
*
48969 GGACACTTTTTTCATATGGTCACAAAATCCTGTACACTTCGAGTTTTTTA-CTGAA-TTTTTTGT
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGT
* * *
49032 GCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGCGTCGGGCCAAAACTCCTTCTGAAAAAA
194 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAA
* * ** * *
49097 TTTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAGAACGAGTCATCTT
259 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * * ** * * * *
49162 GCCATG-AA-TTTAC---AAGCCATAA---A--AATG---GCATTGGCACGGCAGAAATATGAAG
324 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG--G
*** * * ** ** * * * *
49214 -ATGTGGCTAAACCCACCTACCACCCTATCGATCCATG-G-CTTGA-GCA--TCCCACCTCTTTG
387 CAT-TGGC--ATGGCA--GA--A--ATAT-GA-AGATGTGCCTAAACCCACCTACCACC-CTATC
* * *** * * * * ** * ** ** ** * *
49273 GCT-GACGTAGTGCCCGT-CCGTCCACT-TGTTTCATCGGTTG-GCTTAGGCATAG-GAGTTCAT
440 GATCCACGGCTTGCGCATCCCG-CCTCTCTG--GCGGC-GTAGTGC--CCGC-CCGCCCGCTCGT
* * * * * * ** * * ** *
49333 TCCCAGTCTAAGATTGG-ATCGGACAGA-GG-GTT--GTGGCAG-C-AGGATC-AAAAGCAC-GT
498 T-TC-GTC---GGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTG-
* * * ** * * * *
49389 AGGAG--G-GG-ACCCGG-TCGATC--CCCGGC-TTGCGCACCCTACC---CCTCTGGC-TG-GC
556 AGG-GTTGTGGCAGCAGGATCGA-CAGCAC-GCAGGGGGGACCCGACCGATCC-CCGGCTTGCGC
** ** * *
49441 -TGAGTG-CCTGCA-----------------CA--CTCGTTTCGTGGGTTGACTTAGGCATATGG
617 AT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** * *
49485 AGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCAAAGTGTAAGGTCAAACCGGACCGAGGGTT
681 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTT
* * * * * * * *
49550 GCGAGTACAGATGCTGGGCTCGAGCATGTGCTAGTGCCACA-TTTTTTTCACCTGGGGCACCATC
746 GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATC
* * * * * *
49614 ACCGGAGCATCACCGGAGAACCTAACCGACGGCATTAGGGTTCCGGTGATTGGGGGGCGGGGGGG
811 GCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGAGGGGGGG
*
49679 ATGTGCGCACATGTTGTGTGA
876 -TGTGCGCACATGATGTGTGA
*
49700 -GTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAC
1 TG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
49764 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** *
49829 GGATGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTTC-AGTTTTTAGCTCAATTTTTTTGT
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGT
*
49893 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGTGGCCAAAACTCCTTCTGAAAAAA
194 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
49958 TTTTAAAAAAATCCCGAACCGTAAAAAGTATCAAAAATCGTGAAAAATAGAACACGAGTCGTCTT
259 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
50023 GCCATGAAACCTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
324 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
50088 TTGGCATGGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGC
389 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
50153 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTTCATCGGTTGGCTTATG-A
454 GCATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * **
50217 CTACGAAGTTCATTGCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCAGGATTGGTAGC
518 -TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * * * * *
50282 ACGTAGGGGGTACTCGATC-ATCCCCGGTTTGCGCATCCTACCCCTCTGGCCGGCTGATCGCTCG
582 ACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
50346 CACGTTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTC
647 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * * * * * * *
50411 ATTCCCAGTGTAAGATTGGATCGAATCGAGGGTTGTGGGTGCACATGCTAGGCTCAGGCATGTGT
712 ATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* * * * *
50476 TGGTCCCACATTTTTCTTTCGCTCGGGGCACCAT---C---G--T---CGGAGAACTTGACTGAC
777 TGGTGCCGCATTTTT-TTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
** * ** *
50530 ATCATTGGGGTTCCGACGATT-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
841 GGCATTGGGGTTCCGATGATTGGGGGGAGGGGGGGTGTGCGCACATGATGTGTGA
* *
50584 TGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
50649 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
50714 GACACTTTTTTCAAATGGTCACAAAACCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
50779 ATGACAAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
196 ATG-C-CAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAA
* *
50844 TTTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
259 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
50909 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
324 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
50974 TTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGC
389 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
51039 GCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGTA
454 GCATCCCGCCTCTCT-GGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
51104 TACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTGTAGTAGCAGGATCGATAGC
518 TACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * * * * *
51168 ACACAGGGGGGACCTGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGTCGGTTGAGCGCTCG
582 ACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * *
51233 CATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTGATTCCCAGTCTAAGCGTACAGAGTTC
647 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
51298 ATTCCCAG-GTAAGATCTGACAGGACTGTGGTTTGTGGGTGCACATGCTGGGCTCGGGCATGTGC
712 ATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* ** *
51362 TGGTGTCGCATTTTTTTTCGCCCGGGGCACCATCAG-CGGAGCATCGTTGGAGAACCTGA---TC
777 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATC-GCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * ** *
51423 GGCA-----G---C-AT--TAGGGGGCATGGCGACTGTGTGCACATGATGTGTGA
841 GGCATTGGGGTTCCGATGATTGGGGGGAGGGGGGGTGTGCGCACATGATGTGTGA
* * * *
51467 TGGGTGCTGGTACTTGGCCCATATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTCAGACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
51532 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** * * *
51597 GATGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
51662 ATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* ** * * *
51727 TTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTCC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
51792 CATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
51857 GGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
391 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
51922 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAATTGGCTTAGGCATA
456 ATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * *
51987 CGAAGTTCATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTGCAGTAGCAGGATCGATAGCAC
520 CGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * * * * * * * *
52051 ACAGGAGGGACCTGATCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCGGTTGAACGCTCGCA
584 GCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
52116 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTGATTCCCAATCTAAGCATACGGAGTTCAT
649 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * * *
52181 TCCCAG-GTAAGATCGGATAGGACTGAGGTTTGTGGGTGCACATGCTGGCCTCGGGCATGTGCTG
714 TCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* ** * *
52245 GTGTCGCATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGCTGGAGAACCTGA---TCGGC
779 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGC
* ** * *
52307 A-----G---C----ATTGGGGGGTAGGGCGACTATGTGCACATGATGTGTGA
844 ATTGGGGTTCCGATGATTGGGGGG-AGGGGGGGTGTGCGCACATGATGTGTGA
* * * *
52348 TGGGTGCTGGTACTTGGCCCATATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAAACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
52413 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
52478 GACGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
52543 ATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
* ** * * *
52608 TTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGGGTCGTCTTCC
261 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
52673 CATGAAACTTCACATGAAGCCTTAAGGGACCATTTGTATGAATTTACAAGCCATAAAAATGGCAT
326 CATGAAACTTCACATGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
52738 TGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCACGGCTTGTG
390 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * ** * *
52802 CATCCCGCCTCTCTGGTCGAAGTAGTGCCCTCCCGCTTGCTCATTTCGTCAGTTGGCTTAGGCAT
455 CATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * ** ** *
52867 ACGGAGTTCATTCCTAATCTAAGATCCAACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCAC
519 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
* ** * * * * * * * * *
52932 ACAGTGGGGGACTTGGCCGATCCTCGGTTTGTGCATTCTGCCCCTCTGGCCAGTTGAACGCCCGA
584 GCAG-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
52997 AAGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCGTT--CAGTCTAAGCAAATGGAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
53060 TTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGC
713 TTCCCAGTGTAAGATCAG-ACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* * * * * *
53124 TGGTGCCGCATTTTTTTTCACCCGAGGCACCATCGCCTGAGCATCGGCGGAGAACCTGACAGGCG
777 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
* * *
53189 GCATTAGGGTTCCGGTGATTGGGGGGGTGGGGGGGATGTGCGCACATGATGTGTGA
842 GCATTGGGGTTCCGATGATT-GGGGGGAGGGGGGG-TGTGCGCACATGATGTGTGA
*
53245 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
53310 CCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
53375 GACAATTTTTTCAAATGGTCGCAAAAATCCTGTACGCTTTGAGTTTTTAGCTGAA-TTTTTT-TG
131 GACACTTTTTTCAAATGGTCAC-AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
53438 CATGCCAA-AAAAATAAAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCT-AAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * * *
53501 TTT-TAAAAATCCCAAATCGTATAAAGTTTCAAAAATCTTGAAAAATAGCAAAACGAGTCGTCTT
260 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTT
*
53565 GCCAAT-AAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
324 GCC-ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
53629 ATTAGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTG
388 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
53694 CGTATCTCGCCTCTCTGGCCGACG-AGTGCCCTCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGC
453 CGCATCCCGCCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * *
53758 ATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTATGGCAACAGGATCGATAGC
517 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGC
** * * * * * *
53823 ACGCAGTGGGGGACTTGGCTGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAACGCCC
582 ACGCAG-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
53888 GAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
646 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
53953 CATTCCCAATGTAAGATCAGACCGGATCGAGGGTTGTGGGTGCACATGTTGGGCTTGAGCATGTG
711 CATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * *
54018 CTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCGCCGGAGAATCTGACCGAC
776 CTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * * * * *
54083 CGTATTAGGGTTCCGGTGATTGGGGGGCAGCGGGGATATGCGCACATGATGTGTGG
841 GGCATTGGGGTTCCGATGATTGGGGGG-AGGGGGGGTGTGCGCACATGATGTGTGA
* *
54139 TGGGTGCAGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
54204 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * **
54269 GACACTTTCTTCAAATGGTCACAAAATCCTATACGCTTCGAGTTTTTAGGTG-AGGTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ***** * *
54333 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGT-T-AAAAAAGAAACTACTTCTAAAAAAAT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCA-AAACTCCTTCTGAAAAAAT
* * * * *
54396 TTAAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCCTCTCG
260 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
54461 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
54526 TGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
390 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
54591 CATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGCCTTAGGCAT
455 CATCCCGCCTCTCT-GGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * ** * * *
54656 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA-TCAGAGCTTGCAGCAACAAGATC-AGTAGC
519 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAG-GGTTGTGGCAGCAGGATCGA-CAGC
* * * * ** *
54719 ACGTAGGGGGGGACCTGACCGATCCCCGACTTGCGCATCCTGCCCCTTTGGCCGGCTGAATGCCT
582 ACGCA-GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
54784 GCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTT
646 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
54849 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGGTGCACGTGCTGGGCTCCGACATGTG
711 CATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
*** ** ** * *
54914 CTGGTGTTACATTTTTTTTCTTCCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGATCGAC
776 CTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * *
54979 GGCATTGGGGTTCCGGTGA-T-CGGGG-GGTGGGG-GTGCGCACATGATGTGTGG
841 GGCATTGGGGTTCCGATGATTGGGGGGAGGGGGGGTGTGCGCACATGATGTGTGA
*
55030 TGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCC-ATCCCTCATCAAACCTCGAGAACTCAAAC
1 TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
55094 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
55159 GGACGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGGTGAATTTTTTTGTG
130 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** ** *
55224 CACGCCAACAAAAATACAAGGATCACGTCTACTGAGTGTGGGGAGAAAACTCCTTCCGAAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * *
55289 TTAAAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
260 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
55354 CTATGAAACTTCACATGAAGGCTTAAGGGACCATTGCACGAATTTACAAGCCATAAAAATGGCAT
325 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
55419 TGGCATGGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCG
390 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * * * *
55483 CATCCCGCCTCTCTAGCCAACGTACTGCCCGCCCACTCACTCGTTTCATCGGTTGGCTTAGGTAT
455 CATCCCGCCTCTCT-GGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
*
55548 ATGGAG
519 ACGGAG
55554 ATTTTACAGG
Statistics
Matches: 11277, Mismatches: 2013, Indels: 1623
0.76 0.13 0.11
Matches are distributed among these distances:
826 17 0.00
827 1 0.00
828 2 0.00
832 2 0.00
834 1 0.00
835 1 0.00
843 2 0.00
845 4 0.00
846 5 0.00
847 19 0.00
848 6 0.00
849 5 0.00
850 12 0.00
851 27 0.00
852 72 0.01
853 4 0.00
854 5 0.00
855 36 0.00
856 14 0.00
857 12 0.00
858 50 0.00
859 70 0.01
860 270 0.02
861 283 0.03
862 108 0.01
863 8 0.00
864 13 0.00
865 9 0.00
866 22 0.00
867 29 0.00
868 8 0.00
869 24 0.00
870 77 0.01
871 6 0.00
872 14 0.00
873 5 0.00
874 20 0.00
875 3 0.00
876 5 0.00
879 1 0.00
880 34 0.00
881 1236 0.11
882 649 0.06
883 450 0.04
884 239 0.02
885 34 0.00
886 448 0.04
887 109 0.01
888 4 0.00
889 3 0.00
890 5 0.00
891 186 0.02
892 145 0.01
893 535 0.05
894 512 0.05
895 719 0.06
896 1283 0.11
897 932 0.08
898 54 0.00
899 103 0.01
900 352 0.03
901 258 0.02
902 236 0.02
903 2 0.00
907 1 0.00
909 1 0.00
910 4 0.00
911 1 0.00
912 2 0.00
913 6 0.00
914 7 0.00
915 1 0.00
916 1 0.00
917 2 0.00
918 8 0.00
919 6 0.00
920 1 0.00
921 6 0.00
922 16 0.00
923 14 0.00
924 5 0.00
925 1 0.00
926 2 0.00
927 1 0.00
928 1 0.00
929 3 0.00
931 8 0.00
932 2 0.00
933 4 0.00
934 10 0.00
935 3 0.00
937 3 0.00
938 4 0.00
939 3 0.00
940 6 0.00
942 5 0.00
943 1 0.00
944 3 0.00
945 4 0.00
946 1 0.00
947 1 0.00
949 3 0.00
950 1 0.00
951 8 0.00
952 11 0.00
953 2 0.00
954 8 0.00
955 10 0.00
956 6 0.00
957 7 0.00
958 9 0.00
959 11 0.00
960 7 0.00
961 14 0.00
962 28 0.00
963 15 0.00
964 23 0.00
965 10 0.00
966 5 0.00
967 14 0.00
968 12 0.00
969 26 0.00
970 23 0.00
971 13 0.00
972 21 0.00
973 19 0.00
974 19 0.00
975 11 0.00
976 16 0.00
977 6 0.00
978 19 0.00
979 23 0.00
980 15 0.00
981 26 0.00
982 12 0.00
983 20 0.00
984 38 0.00
985 10 0.00
986 10 0.00
987 15 0.00
988 4 0.00
989 19 0.00
990 16 0.00
991 8 0.00
992 14 0.00
993 11 0.00
994 20 0.00
995 22 0.00
996 41 0.00
997 6 0.00
998 23 0.00
999 19 0.00
1000 24 0.00
1001 28 0.00
1002 23 0.00
1003 10 0.00
1004 23 0.00
1005 36 0.00
1006 36 0.00
1007 12 0.00
1008 13 0.00
1009 10 0.00
1010 21 0.00
1011 11 0.00
1012 17 0.00
1013 11 0.00
1014 9 0.00
1015 42 0.00
1016 13 0.00
1017 11 0.00
1018 17 0.00
1019 59 0.01
1020 6 0.00
1021 19 0.00
1022 12 0.00
1023 12 0.00
1024 22 0.00
1026 2 0.00
1027 16 0.00
1028 9 0.00
1029 6 0.00
1030 11 0.00
1031 3 0.00
1032 5 0.00
1034 1 0.00
1035 1 0.00
1036 2 0.00
1037 3 0.00
1038 4 0.00
1039 1 0.00
1040 5 0.00
1041 6 0.00
1042 3 0.00
1043 4 0.00
1045 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGATGATTGGGGGGAGGGGGGGTGTGCGCACATGATGTGTGA
Found at i:48288 original size:897 final size:895
Alignment explanation
Indices: 46158--55553 Score: 10309
Period size: 881 Copynumber: 10.6 Consensus size: 895
46148 GGGGGCGAGT
* * *
46158 GGGGGTGTGCCCACATGATGTGCGAAT-GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGTGTGCGCACATGATGTGTG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
** * *
46222 CTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAAGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
46287 GTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGATCACAAAA-CCATGTACACTT
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC-TGTACACTT
* * * * * *
46351 CAAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAATTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGT
* * * *
46415 GGGGCCAAAACTCTTTTTGAAAAAATTTTCAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCA
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
* * * *
46480 TGAAAAATAGAAAACAAGTGGTCTTGCCATGAAACTTCACATGAAGGCTTACGAGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* ** * *
46545 GAATTTACAAGACATAAAAATGGCATTGGCATGAAAAAAATATGAAGATGTGCCTAAACCCACCG
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * *
46610 ACCACCCTATCGATCCACGGCTTGCACATCTCGCTTCTCTAGCCAGCTTAGTGCCCGTCCGCCCG
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * *
46675 CTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
* * * * * * * * * * * * **
46740 GGTTACAGTAGTAGGATAGGTAGCACGTAGGAGGGGACCCGACCGAACCCCAGCTTGAGCATCCT
584 GGTTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACCTG-TCGATCCCCGGCTTGTCCATCCT
* * * * * * * *
46805 ACCCCTCTGGCCGACTGAGCCCCCGCACACTCATTTCGTGGGTTGACTTAGGCAAACAGAGTTCA
648 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
46870 TTCCCAGTCTAACCATACGGAGTTCATTCCGAATGTAAGATCAGA-CGGGATCGAGGGTTGTGGG
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATC-GGATCGAGGGTTGTGGG
* * ** ** * *
46934 TGCACATGCTGGGCTTGGGCATGTGCTGGTGCTACATTTTTTTTCGCCTAGGGCACCAACGCCGG
777 TGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGG
* * * * ***
46999 AGCATCGCCAGAGAACCTGACCGGCCGCATTAGGGTTCCAACGATTGGGGGGGCGGG
842 AGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGA-TGGGGGGGC--G
* *
47056 TGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCC
1 -GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
47121 CTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
47186 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCCCGTACACTTA
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* *
47251 GAGTTTTTAGCTGAATTGTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTG
** * ** **
47316 GGGCCAAAACTCCTTCTGAAAAAATTAAAAAAAAATCTTGAACATTAAAAAGTTTTGAAAATCAT
260 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
47381 GAAAAATAGAAAACCAGTCGTCTTGCCCTGATACTTCACCTGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
*
47446 AATTTACAAGCCATAAAAATGGCATTGGCAAGGTAGAAATATGAAGATGTGCCTAAACCCA-CTA
390 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT-
* ** * * *
47510 ACCATCCTATCGATCCATTGCTTGCACGTCCCGCCTCTCTGGCCGGCCTAGTGCCCGCCCGCCCG
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
47575 CTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCGGGCCAGACCAA
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCAGACCAA
* * * * *
47639 GGGATGCAGTAGCAGGATCGACAGCACATCGGGGGGGACCAAGTCGATCCCCGGCTTG-CCATCT
583 GGGTTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACC-TGTCGATCCCCGGCTTGTCCATCC
* * * * *
47703 TGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTC
647 TGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * ***
47768 ATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGATCGGATCAAGGGTTACAGG
712 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTGGG
* ** *
47833 TGCACATCCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTTTTTCACCCGGGGCACCATCACCG
777 TGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCACCG
* *
47898 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGACTGGGGGGGCG
841 GAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGA-TGGGGGGGCG
** *
47954 GGGGGTGTGCGCACATGATGTGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
48019 TCATCAAACC-CTGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTACTGCCA
66 TCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
48083 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCCCGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * *
48148 CAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTGTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTG
* ** *
48213 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCGCGAACATTAAGAAGTTTCAAAAATCAT
260 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
48278 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* *
48343 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTC-CCTA
390 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
48407 CCACCCTATCGATCCACGGTTTACGCATCCCGCCTCTCTTGTCGGTGTAGTGCCCGCCTGCCCAC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * * * *
48472 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTATAAGATAGGATCGGA-CAGAG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA-AG
* * * *
48536 GGTTGC-GACAGCAGGATCGACAGCACGT-AGGGGGGACGC-GATCGATCCCCGACTTG-CGCAT
584 GGTTGCAG-CAGCAGGATCGATAGCACATCGGGGGGGAC-CTG-TCGATCCCCGGCTTGTC-CAT
* * ** * * *
48597 CTTGCCCCTCTGGCCAGCTGAGTGCCCGCACACTCGTTTCGTTGGTTGACTTAGGCATGCGGAGT
645 CCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* **
48662 TCATTCCCAGTGTAAG-AT-C--AG---A---CC--------A---GA----A-CGAGGGTTACG
710 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTG
* * * * *
48701 GGTGCACATGTTGCGCTCGAGCCTGTGCTGGTGCCGTATTTTTTTTCGCCCAGGGCACCAT----
775 GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACC
* ** * * *
48762 ----CA---TCGGAGAACTTGACCGGTGGCATTGGGGTTTCGGTGATTGGGGGGCTGGGTG
840 GGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGA-T--GGGG--GGGCG
* *
48816 GGGGGTGTGCGCATATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCG
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
48880 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
48945 TAGCCATGT-AAGTGTCTGAAATGAGGACACTTTTTTCATATGGTCACAAAATCCTGTACACTTC
131 TAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* *
49009 GAGTTTTTTA-CTGAA-TTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGCGT
195 GAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGT
* * * **
49072 CGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCA
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
* * * * * *
49137 TGAAAAATAGAGAACGAGTCATCTTGCCATG-AA-TTTAC---AAGCCATAA---A--AATG---
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* ** * * * * *** * ** **
49189 GCATTGGCACGGCAGAAATATGAAG-ATGTGGCTAAACCCACCTACCACCCTATCGATCCATG-G
389 GAATTTACAAGCCATAAAAATG--GCAT-TGGC---A---TGGTA-GA-AATAT-GA-AGATGTG
** * * * * * * *** * * * ** **
49252 -CTTGA-GCA--TCCCACCTCTTTGGCT-GACGTAGTGCCCGT-CCGTCCACT-TGTTTCATCGG
441 CCTAAACCCACCTACCACC-CTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTG-GCCGGC-G
* ** ** ** * * * * * * * * *
49310 TTG-GCTTAGGCATAG-GAGTTCATTCCCAGTCTAAGATTGG-ATCGGACAGA-GG-GTT--GTG
502 TAGTGC--CCGC-CCGCCCGCTCGTT-TC-GTC---GGTTGGCTTAGG-CATACGGAGTTCATTC
* * ** ** * * * * * *
49368 GCAG-C-AGGATC--AAAAGCACGTAGGAG--G--GGACCCGG-TCGAT--C-C-CCGGCTTGCG
558 CCAGTCTAAGATCGGACCAG-ACCAAGG-GTTGCAGCAGCAGGATCGATAGCACATCGG--GGGG
* * * * * * * ** * **
49420 CACC---CTACCCCTCTGGC-TGGCTGAGTGCCTGCACACTCGTTTCGTGGGTTG-A----CTTA
619 GACCTGTCGATCCC-C-GGCTTGTC-CA-T-CCTGC-C-C-C-TCTGGCCGGCTGAACGCCCGCA
* * * * * ** ** * **
49476 -G-GCATAT-G-GAGTTTA-TT-CCCAGT-CTAAG--CATACAGAGT-T---C------A-TTCA
675 CGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * ** * * * * * *
49521 ----AAGTGTAAGGTCAAACCGGACCGAGGGTTGCGAGTACAGATGCTGGGCTCGAGCATGTGCT
739 TTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCT
* * * * ** *
49582 AGTGCCACA-TTTTTTTCACCTGGGGCACCATCACCGGAGCATCACCGGAGAACCTAACCGACGG
804 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGG
*
49646 CATTAGGGTTCCGGTGATTGGGGGGCGG
869 CATTAGGGTTCCGGTGATGGGGGGGC-G
*
49674 GGGGGATGTGCGCACATGTTGTGTGA-GTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGG-TGTGCGCACATGATGTGTGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
49738 CCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
64 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* **
49803 AGTAGCCATTAAAGTGTTTGAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCCTGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-T
*
49868 TC-AGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTG
193 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTG
* * *
49932 TGTGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTATCAAAAATC
258 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* * * *
49997 GTGAAAAATAGAACACGAGTCGTCTTGCCATGAAACCTCACATGAAGGCCTAAGGGACCATTGTA
323 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
*
50062 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCTACC
388 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
*
50127 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGCCC
453 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * *
50192 GCTCATTTCATCGGTTGGCTTATG-ACTACGAAGTTCATTGCCAGTCTAAGATCGGACC-GAACT
518 GCTCGTTTCGTCGGTTGGCTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACC
* * * * * * * *
50255 GAGGGTTGCGGCAGCAGGATTGGTAGCACGT-AGGGGGTA-CTCGATC-ATCCCCGGTTTG-CGC
581 AAGGGTTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACCT-G-TCGATCCCCGGCTTGTC-C
* * * * *
50316 ATCCTACCCCTCTGGCCGGCTGATCGCTCGCACGTTCGTTTCGTGGGTTGACTTAGGCACACGGA
643 ATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
50381 GTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTGTAAGATTGGATCGAATCGAGGGTTG
708 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTG
* * * * *
50446 TGGGTGCACATGCTAGGCTC-AGGCATGTGTTGGTCCCACATTTTTCTTTCGCTCGGGG------
773 TGGGTGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTT-TTTCGCCCGGGGCACCAT
* * ** * ** * *
50504 CA-C----CATCGTCGGAGAACTTGACTGACATCATTGGGGTTCCGACGATTGGGGGCCG
836 CACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGCG
* *
50559 GGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
50624 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
50689 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCCTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
* * * *
50754 AGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAAAATACAAGGATCATGTCTACCAAGTTT
196 AGTTTTTAGCTGAATTTTTTTGTGCATG-C-CAACAAAAATACAAGGATCACGTCTACCAAGTGT
* * *
50819 GGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCG
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
50884 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
*
50949 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACTT
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
* *
51014 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * **
51079 CTCGTTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
* * * * *
51144 GGTTGTAGTAGCAGGATCGATAGCACA-CAGGGGGGACCTGATCGATCCCCGACTTGTGCATCCT
584 GGTTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACCTG-TCGATCCCCGGCTTGTCCATCCT
* * * * * * *
51208 GCCCCTCTGGTCGGTTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTGA
648 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
51273 TTCCCAGTCTAAGCGTACAGAGTTCATTCCCAG-GTAAGATCTGA-CAGGA-CTGTGGTTTGTGG
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATC-GGATC-GAGGGTTGTGG
* * *
51335 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCCGGGGCACCATCAGCG
776 GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCG
* * * * *
51400 GAGCATCGTTGGAGAACCTGATCGGCAGCATTAGGG----GG-CAT-----GGC-
841 GAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGCG
** * * *
51444 --GACTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCGTATCCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
51507 TCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* ** *
51572 TGGCCATTAAAGTGTCTGAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTAG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
* * * * *
51637 AGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGG
* ** *
51702 GGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTG
261 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* * *
51767 AAAAATAGAAAACGGGTCGTCTTCCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
51832 ATTTACGAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
391 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
51897 CACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCT
456 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
** * * * **
51962 CGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGG
521 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGG
* * * * * *
52027 TTGCAGTAGCAGGATCGATAGCACA-CAGGAGGGACCTGATCGATCCCCGACTTGTGCATCCTAC
586 TTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACCTG-TCGATCCCCGGCTTGTCCATCCTGC
* * * * * *
52091 CCCTCTGGTCGGTTGAACGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTGATT
650 CCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
52156 CCCAATCTAAGCATACGGAGTTCATTCCCAG-GTAAGATCGGATAGGA-CTGAGGTTTGTGGGTG
715 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATC-GAGGGTTGTGGGTG
* * * *
52219 CACATGCTGGCCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCCGGGGCACCATCATCGGAG
779 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAG
* * * *
52284 CATCG-CTGGAGAACCTGATCGGCAGCATT-GGG----GG-G-T---AGGGC-
844 CATCGTC-GGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGCG
** * * * *
52325 --GACTATGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCTTATCCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
52388 TCATCAAACCTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
52453 TAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTAG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
* * * * *
52518 AGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGG
* **
52583 GGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATG
261 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* * * *
52648 AAAAATAAAAAACGGGTCGTCTTCCCATGAAACTTCACATGAAGCCTTAAGGGACCATTTGTATG
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA-TTGTATG
52713 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
390 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * **
52778 CCACCC-ATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGTCGAAGTAGTGCCCTCCCGCTTGC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * ** *
52842 TCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCCAACCGGACCAAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGG
* * * * * * * * *
52907 GTTACGGCAGCAGGATCGATAGCACA-CAGTGGGGGACTTGGCCGATCCTCGGTTTGTGCATTCT
585 GTTGCAGCAGCAGGATCGATAGCACATC-GGGGGGGACCT-GTCGATCCCCGGCTTGTCCATCCT
* * * * * *
52971 GCCCCTCTGGCCAGTTGAACGCCCGAAAGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCG
648 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
53036 TT--CAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGGT
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTGGGT
* * * *
53099 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCATCGCCTGA
778 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGA
* * * *
53164 GCATCGGCGGAGAACCTGACAGGCGGCATTAGGGTTCCGGTGATTGGGGGGGTGG
843 GCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGA-TGGGGGGG-CG
53219 GGGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGG-TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
53284 CTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
53349 GTAGCCATTAAAGTGTTTGAAATGGGGACAATTTTTTCAAATGGTCGCAAAAATCCTGTACGCTT
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCCTGTACACTT
* * *
53414 TGAGTTTTTAGCTGAA-TTTTTT-TGCATGCCAA-AAAAATAAAAGGATCACGTCTACCAAGTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGT
* * * * * * *
53476 GGGCCCAAAACTCCTTCT-AAAAAATTTT-TAAAAATCCCAAATCGTATAAAGTTTCAAAAATCT
259 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
*
53539 TGAAAAATAGCAAAACGAGTCGTCTTGCCAAT-AAACTTCACTTGAAGGCTTAAGGGACCATTGT
324 TGAAAAATAG-AAAACGAGTCGTCTTGCC-ATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
*
53603 ATGAATTTACAAGCCATAAAAATGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
387 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
53668 CTACCACCCCATCGATCCACGGCTTGCGTATCTCGCCTCTCTGGCCGACG-AGTGCCCTCCCGCC
452 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * **
53732 TGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTG
517 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
*** * * * * * * *
53797 AGGGTTATGGCAACAGGATCGATAGCAC-GCAGTGGGGGACTTGGCTGATCCCTGGCTTGTGCAT
582 AGGGTTGCAGCAGCAGGATCGATAGCACATC-GGGGGGGACCTGTC-GATCCCCGGCTTGTCCAT
* * *
53861 CCTGCCCCTCTGGCCGACTGAACGCCCGAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
645 CCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
53926 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATGTAAGATCAGACCGGATCGAGGGTTGTG
710 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTG
* * * * *
53991 GGTGCACATGTTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCC
775 GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACC
* * * * *
54056 GGAGCATCGCCGGAGAATCTGACCGACCGTATTAGGGTTCCGGTGATTGGGGGGCAG
840 GGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGC-G
* * * * *
54113 CGGGGATATGCGCACATGATGTGTGGTGGGTGCAGGTACTTGACCCTTATATTGGCCCCCTATCC
1 -GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
54178 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
54243 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCCTATACGCTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* ** *
54308 GAGTTTTTAGGTG-AGGTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGT-T-
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTG
***** * * * *
54370 AAAAAAGAAACTACTTCTAAAAAAATTTAAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCA
260 GGGCCA-AAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
* * *
54435 TGAAAAATGGAAAACGAGTCCTCTCGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* *
54500 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCT
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCT
*
54565 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG
454 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
54630 CTCATTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC-AG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
* * * * * * *
54694 AGCTTGCAGCAACAAGATC-AGTAGCACGTAGGGGGGGACCTGACCGATCCCCGACTTG-CGCAT
584 -GGTTGCAGCAGCAGGATCGA-TAGCACATCGGGGGGGACCTG-TCGATCCCCGGCTTGTC-CAT
* * * * * *
54757 CCTGCCCCTTTGGCCGGCTGAATGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
645 CCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
54822 TCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTG
710 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTG
* *** ** **
54887 GGTGCACGTGCTGGGCTCCGA-CATGTGCTGGTGTTACATTTTTTTTCTTCCGGGGCACCATCGT
775 GGTGCACATGCTGGGCT-CGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCAC
* * * *
54951 TGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGGTGAT-CGGGGG-G
839 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGCG
* *
55006 TGGGG-GTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCC-ATCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCC
* *
55069 CTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
55134 GTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCCTGTACACTTT
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * **
55199 GAGTTTTTAGGTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACTGAGTGTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTG
** * * * *
55264 GGGAGAAAACTCCTTCCGAAAAAATTTAAAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCAT
260 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
55329 GAAAAATAGAAAATGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCATTGCACG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
55394 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAA-CCACCTA
390 AATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * * * *
55458 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCAACGTACTGCCCGCCCACTCAC
455 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
55523 TCGTTTCATCGGTTGGCTTAGGTATATGGAG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAG
55554 ATTTTACAGG
Statistics
Matches: 7290, Mismatches: 943, Indels: 535
0.83 0.11 0.06
Matches are distributed among these distances:
835 1 0.00
837 1 0.00
840 1 0.00
841 7 0.00
843 5 0.00
844 3 0.00
845 4 0.00
846 6 0.00
847 22 0.00
848 8 0.00
849 10 0.00
850 11 0.00
851 25 0.00
852 46 0.01
853 2 0.00
854 13 0.00
855 33 0.00
856 15 0.00
857 15 0.00
858 51 0.01
859 65 0.01
860 274 0.04
861 277 0.04
862 108 0.01
863 8 0.00
864 13 0.00
865 10 0.00
866 23 0.00
867 35 0.00
868 8 0.00
869 24 0.00
870 48 0.01
871 12 0.00
872 11 0.00
873 8 0.00
874 23 0.00
875 7 0.00
876 6 0.00
877 2 0.00
878 6 0.00
879 1 0.00
880 38 0.01
881 1221 0.17
882 165 0.02
883 209 0.03
884 204 0.03
885 21 0.00
886 464 0.06
887 108 0.01
889 2 0.00
890 2 0.00
891 194 0.03
892 151 0.02
893 502 0.07
894 284 0.04
895 481 0.07
896 600 0.08
897 592 0.08
898 33 0.00
899 329 0.05
900 440 0.06
901 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTGG
GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGG
TTGCAGCAGCAGGATCGATAGCACATCGGGGGGGACCTGTCGATCCCCGGCTTGTCCATCCTGCC
CCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGATCGAGGGTTGTGGGTGCA
CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGCA
TCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATGGGGGGGCG
Found at i:53967 original size:26 final size:26
Alignment explanation
Indices: 53915--53967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
53905 GTTGACTTAG
*
53915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
53941 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
53967 G
1 G
53968 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:54841 original size:26 final size:26
Alignment explanation
Indices: 54811--54863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
54801 GTTGACTTAG
54811 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
54837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
54863 G
1 G
54864 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:57472 original size:897 final size:885
Alignment explanation
Indices: 56152--58034 Score: 2739
Period size: 897 Copynumber: 2.1 Consensus size: 885
56142 AGGCATATGA
* ** *
56152 AGTTCTTTCCCAGTGTAAGATCGAACATGATCGAGGGTTATGGGTGCACATGCTAGGG-TCG-GA
1 AGTTCATTCCCAGTGTAAGATCGAACCGGATCGAGGGTTGTGGGTGCACATGCT-GGGCTCGAG-
* *
56215 CATGTG-TGGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCTGAGAACCTGACCGACGGCA
64 CATGTGCT-GGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCTGAGAACCTGACAGACGGCA
* *
56279 TTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
128 TTAGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACT
* * * * * *
56344 TAGCCCTTATATTGGTCCGCTATCCCTCATCAAACCTCAAGAAGTCACACCCCCTTAACGAGCGT
193 TAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACAT
**
56409 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAA
258 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAA
*
56474 ATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAAT
323 ATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAAT
* * * * *
56539 ACAAGGATCATGTCTACCAGGTTTGGGACCAAACTCCTTCT-GAAAAATTTTTAAAAAATCTCGA
388 AAAAGGATCACGTCTACCAAGTTTGGGACCAAACTCCTTCTAAAAAAATTTTTAAAAAATCCCGA
*
56603 ACCGTAAAAAGTTTAAAAAATCGTGAAAAATA-AAAACGGGTCGTCTT-CC-ATGAAACTTCACA
453 ACCGTAAAAAGTTTAAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCAAT-AAACTTCACA
*
56665 TGAAGCCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
517 TGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGGTAGAAAT
* *
56729 ATGAAGATGTTGCCTAAACCCACCTACCATCCCATCGATCCAC-GCTTGTGCATCCCGCCTCTCT
582 ATGAAGATG-TGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* *
56793 GGCCGAAGTAAGTGCCCTCCCGCTTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-
646 GGCCGAAGT-AGTGCCCTCCCGCCTGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
56857 CTAATCTAAGATCCAACCGGAC-AAGGGTTACGGCAGCAGGATCGATAGCACACAGTGGGGGACT
710 CCAATCTAAGATCCAACCAGACTAAGGGTTACGGCAACAGGATCGATAACACACAGTGGGGGACT
* * **
56921 TGGCCGATCCCCGGTTTGTGCATTCTGCCCCTCTAGCCAGGTTGAACGCCCGTAAAGCTCGTTT-
775 TGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCC-GACTGAACGCCCG-AAAGCTCGTTTC
*
56985 AGTTGGGTTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCAAATGG
838 A--TGGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGG
* *
57036 AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTGTAAGATCGAACCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
* *
57101 TGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCATCGTTGGAGCATCGTCGGAGAACCTGAC
66 TGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATC------GC--C-T--GAGAACCTGAC
* * * * *
57166 AGGCGGCATTAGGGTTTCGGTGATTGGGGGGGTTGGGGGGATGTGCGCACATGATGTGTGATGAG
120 AGACGGCATTAGGGTTCCGGCGATTGGGGGGG-CGGGGGG-TGTGCGCACATGATGTGCGATGAG
* * *
57231 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCT
183 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
57296 TAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
248 TAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
57361 ATTTTTTCAAATGGTCGCAAAATCCTGTACGCTTTGAGTTTTTAGCTGAATT-TTTTGTGCATGC
313 ATTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGCATGC
*
57425 CAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCTAAAAAAATTTTTA
378 CAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACC-AAACTCCTTCTAAAAAAATTTTTA
* * * *
57490 AAAAATCCCGAATCGTATAAAGTTTCAAAAATCTTGAAAAATAGCAAAACGAGTCGTCTTGCCAA
442 AAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATA-CAAAACGAGTCGTCTTGCCAA
* *
57555 TAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGC
506 TAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGC
57620 ATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATC
571 ATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATC
* ** * *
57685 TCGCCTCTCTGGCCGGCGTAGTGCCCTCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGG
636 CCGCCTCTCTGGCCGAAGTAGTGCCCTCCCGCCTGCTCATTTCATCAGTTGGCTTAGGCATACGG
*** * *
57750 AGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTACGGCAACAGGATCGATAACACGCAG
701 AGTTCATTCCCAATCTAAGATCCAACCAGACTAAGGGTTACGGCAACAGGATCGATAACACACAG
* * *
57815 TGGGGGACTTGGCTGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAACGCCCGAAAGC
766 TGGGGGACTTGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGACTGAACGCCCGAAAGC
*
57880 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
831 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGG
* * * *
57935 AGTTCATTCCCAATGTAAGATCGGACCGGATCGAGGGTTGTGGGTGCACATGTTGGGCTTGAGCA
1 AGTTCATTCCCAGTGTAAGATCGAACCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
58000 TGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCAC
66 TGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCAC
Statistics
Matches: 890, Mismatches: 82, Indels: 39
0.88 0.08 0.04
Matches are distributed among these distances:
883 3 0.00
884 87 0.10
885 2 0.00
890 2 0.00
892 1 0.00
893 1 0.00
895 38 0.04
896 52 0.06
897 201 0.23
898 49 0.06
899 133 0.15
900 18 0.02
901 118 0.13
902 114 0.13
903 71 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (885 bp):
AGTTCATTCCCAGTGTAAGATCGAACCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCTGAGAACCTGACAGACGGCATTA
GGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTAG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATG
GTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATAAA
AGGATCACGTCTACCAAGTTTGGGACCAAACTCCTTCTAAAAAAATTTTTAAAAAATCCCGAACC
GTAAAAAGTTTAAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCAATAAACTTCACATGAA
GCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGGTAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
AAGTAGTGCCCTCCCGCCTGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
TAAGATCCAACCAGACTAAGGGTTACGGCAACAGGATCGATAACACACAGTGGGGGACTTGGCCG
ATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGACTGAACGCCCGAAAGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGG
Found at i:57953 original size:26 final size:26
Alignment explanation
Indices: 57901--57953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
57891 GTTGACTTAG
*
57901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
57927 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
57953 G
1 G
57954 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.