Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 100 of 117
Found at i:18623265 original size:26 final size:26
Alignment explanation
Indices: 18623229--18623281 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18623219 CTGGTTTGAT
18623229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18623255 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18623281 C
1 C
18623282 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18623934 original size:897 final size:894
Alignment explanation
Indices: 18621629--18626815 Score: 6789
Period size: 898 Copynumber: 5.8 Consensus size: 894
18621619 ACTTTGTATG
* * * * *
18621629 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA---G-CGTGCAGGC--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * * *
18621688 CTC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGCGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
*** *
18621751 GCACATCTTCATATTTCTGCGCACCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18621816 TTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTGGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
18621881 ATTTTGCGGTTTGGGATTTTTGAAAATTTTTTC-AGGAATAGTTTTGGCCCCAAACATGGTAGAC
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAGG---AGTTTTGGCCCCAAACTTGGTAGAC
* * * *
18621945 GTGATCCTTGTATTTTTATTGGCATGCACCAAAAAATTCAGCTAAAAAGTCGAAATGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18622010 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAAACATA
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
18622075 TAAAATCTCAGATGCTCTTTAAGGTGGAGTGAGTTCCCGAGGTTTGATGAGGGATAGAGGGCCAA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
18622140 TATAAGGACCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCGATCG
** *
18622205 -CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATAAAG
583 TC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
* * * * *
18622269 AAAAATGCGGCACCAACACATGCCCGAGCCTAGCAAGTGCTACCGCAACCCTCGGTCTGATCCGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGA
*
18622334 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * **
18622399 CACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGGGCAAGCCGGGGATTGGCC
777 CACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
** * * * *
18622464 GGGTCCCACTCTCCGTGCTACCAATCCTGCTGCCA-TAACCATCAGT-CTAGTCCGAT
842 GGGTCCC-C-CT-CGCACTACCAATCCTGCTG-CAGCAACCCTCGGTCCGA-TCCGAT
* * * *
18622520 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCTACAAAACTA---G-CGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * *
18622581 CATTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
18622646 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18622711 TTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
18622776 TTTTTGAGGTTCGAGATCTCTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGTTAGACG
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC--AAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
18622841 TGATCCTT-TTTTTTTGTTGGCATGCACAAAAAAGTTCAACTAAAAACTCGAAGTGTACAGGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
18622905 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
18622970 AAAATCTGAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGGTAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18623035 ATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTGCGCACACCCCCCGGTGACCCCC-ATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GACCCCCGATCG
* * * * * *
18623099 TCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGTGAAGA
583 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGA
* * * * * **
18623164 AAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGAT
648 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGAT
*
18623229 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
713 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
18623294 ATGAAACGAGCGTGCGAGCGCTCAACCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCG
778 ACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *
18623359 AGTCCCCCGTGCGCACTATCGATCCTGCTGCAGCAACCCTCAGTCCGATCTGAT
843 GGTCCCCC-T-CGCACTACCAATCCTGCTGCAGCAACCCTCGGTCCGATCCGAT
* * * * * *
18623413 CTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGAGTGGCCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * * * *
18623478 CACTACGTCGACCAGAGAGACGAGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAA
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
18623543 GCACAAT-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCAC-ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
18623607 CTT-AGCCTTCACGTGAAGTTTCATGGTAGGGCGACTCGTTTTTTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
18623671 -TGTTTTGCGGTTCGAGATTTTTTAAATTTTTTTGCAAGGAATTTTAGTCCCAAACTTGGTAGGC
260 CT-TTTTGCGGTTCGAGATTTTTTAAAATTTTTT-CAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
18623735 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-
* *
18623800 TTTTGTGACCATTTGAATAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
18623865 GTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18623930 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGAAC
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCGATC
* * * * *
18623995 GTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGACGTTGCTCCGGCGATGGTACCCCGATGAAG
582 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
**** * * *
18624060 AAAAATGCGGCACCAGCACATTTTTGACCCCAGCATGTGCTACCGAAACCCTCGGTCAGGTCCGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGA
* *
18624125 TCTTAGACTGGGAATTAACTTCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
** ** * * *
18624189 CATAAAACGAGCGTGCGGGCATTCAACCGGCCAGAGGGGCGGGATGCCCAAGCCGGGGATCGACC
777 CACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * * *
18624254 TGGTCCCCCTCTGCATGTTGCCGATCTTGCTGCTA-CAACCCTCGGTCC-AGTCCAAT
842 GGGTCCCCCTC-GCA--CTACCAATCCTGCTGC-AGCAACCCTCGGTCCGA-TCCGAT
* *
18624310 CTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAACCGACGAAACGAGCGGACAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * *
18624375 CACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18624440 GCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18624505 TTAAGCCTTCA-GTTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCACGATTTTTGAAA
196 TTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * ** * * *
18624569 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCTTCGAACATGGTAGAT
260 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC--AAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
18624634 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
18624699 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTG
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
18624764 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATTGGGGGCCAA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18624829 TATAATGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACACCCCTCC-GACCCCTCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCC-CGATC
* * * * ** * ** **
18624893 GCCGGAACCCCAATGCCGACGGTCAGGTTTTCCGATGATGCTCCGGTGATGGTGCCTCGGGGCTG
582 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
** * * * * * *
18624958 AAAAATATGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAGTCCGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGA
*
18625023 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * *
18625088 CACG-AACGAGCGTGCGGCCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
777 CACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * * * * *
18625152 GGGGCCCCCTCTGCATGCTGCCAATCCTTCTACTGCAACCCTTGGTCCGGTCTGAT
842 GGGTCCCCCTC-GCA--CTACCAATCCTGCTGCAGCAACCCTCGGTCCGATCCGAT
* *
18625208 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
** *
18625273 CACTACGCCTACCAGAGAGAAGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18625338 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18625403 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTCGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * ** *
18625468 TTTTTACGCTTCGGGGACTTTTTAAAATTTTTTCGGAATGAGTTTTGGGACCAAACTTGGTAGAT
261 TTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTC--AAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
18625533 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTAAGTTAAAAACTCAAAATGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * ** *
18625598 TTTGTGAACATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTTTTGGCAGCATACCTG
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
18625663 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCCG-GGTTTGATGAGGGATAAGGGGCCA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAGGGATAGGGGGCCA
* *
18625727 ATATAAGTGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCGG-CCCCTCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCC-CGAT
* * * ** * * *
18625791 CGCCAGAACCTCAATGTTGTCGGTCAGGTTCTCCGACGATGCTTCAACGATGGTGCCCCGAAGAA
581 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAA
* * * * *
18625856 GAAAAATGTGGCACTAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCC-G---G
646 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCG
18625917 -TC-----C-------G-A-T-C--A----TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
711 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
18625960 CCACGAAATGAGCGTGCGGGTGCTCAACCAGCCAGAGGCGCAGGATGCGCAAGCCGGGGATCGCT
776 CCACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * *
18626025 CGGGTCGCCCT----CTA-C-A---TGCTGCCGTAACCCTCGGTCCGGTCCAAT
841 CGGGTCCCCCTCGCACTACCAATCCTGCTGCAGCAACCCTCGGTCCGATCCGAT
18626070 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--A-CGGGCGGG
* * * * * *
18626135 TGGGCATTACGTCGGCCAGAGAAACGGGATGCGCAAGCCACGGATCGATAGGGTTGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
18626200 TTAGGCACATCTTCATATTTCGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
18626265 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** **
18626330 AAACTTTTTATGGTTC-AGAATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTCTTA
257 AAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTC-AAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18626394 GACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGATGTGTACAA
320 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18626459 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATTGCTACTGGCAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18626524 CTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATCA-AGGG
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGG
* * *
18626588 CCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCCCGACTTCCC
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGAC--CCC
* *
18626653 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
577 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
** * * *
18626718 CAAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCACAACCCTCGGTCCGG
642 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGG
* *
18626783 TCCGATCTCAGACTGGGAATGAACTCCATATGC
707 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
18626816 CTAAGTCAAC
Statistics
Matches: 3771, Mismatches: 448, Indels: 154
0.86 0.10 0.04
Matches are distributed among these distances:
862 71 0.02
863 4 0.00
864 245 0.06
865 21 0.01
866 311 0.08
867 6 0.00
870 1 0.00
871 2 0.00
873 40 0.01
874 58 0.02
876 1 0.00
877 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 1 0.00
891 50 0.01
892 3 0.00
893 75 0.02
894 456 0.12
895 278 0.07
896 236 0.06
897 669 0.18
898 744 0.20
899 487 0.13
900 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCGATCGTCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
CCCCCTCGCACTACCAATCCTGCTGCAGCAACCCTCGGTCCGATCCGAT
Found at i:18624169 original size:25 final size:26
Alignment explanation
Indices: 18624126--18624177 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
18624116 CAGGTCCGAT
* *
18624126 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18624152 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18624177 C
1 C
18624178 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18625060 original size:26 final size:26
Alignment explanation
Indices: 18625024--18625076 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18625014 CCAGTCCGAT
*
18625024 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18625050 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18625076 C
1 C
18625077 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18627059 original size:159 final size:159
Alignment explanation
Indices: 18626768--18627212 Score: 541
Period size: 159 Copynumber: 2.8 Consensus size: 159
18626758 TGTGCTACCA
* * * *
18626768 CAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
18626833 ATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGATCGGGCCC
66 ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGCCC
* *
18626898 CCCTCTACGTGTTGTCGATCCTACTACCG
131 CCCTCTACGTGCTGTCGATCCTACTACAG
* * * *
18626927 TAACCCTCGGTCTAGTTCGATGTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
18626992 ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTTGGGTCC
66 ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGCCC
**
18627057 CCCTCTGTGTGCTGTCGATCCTACTACAG
131 CCCTCTACGTGCTGTCGATCCTACTACAG
* * * * * *
18627086 CAACCCTTGGTCTGGTCCAATCTTAGACTT-AGAATGAACTCCGTATGCCTAAGCCAACCGATGA
1 CAACCCTCGGTCTGGTCCGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
18627150 AACGAGCGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
65 AATGAGCGTGCGGGC--GCTC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
18627213 AGGGTGGTAG
Statistics
Matches: 241, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
159 202 0.84
160 2 0.01
161 3 0.01
162 1 0.00
163 33 0.14
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
CAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGCCC
CCCTCTACGTGCTGTCGATCCTACTACAG
Found at i:18627868 original size:26 final size:26
Alignment explanation
Indices: 18627819--18627869 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18627809 GGTCCGATCC
**
18627819 TAGACTAGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCCCTATGCT
18627845 TAGACTAGGAATGAACTCCCTATGC
1 TAGACTAGGAATGAACTCCCTATGC
18627870 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCCTATGCT
Found at i:18628768 original size:26 final size:26
Alignment explanation
Indices: 18628717--18628769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18628707 CTGGTCTTAT
*
18628717 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18628743 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCATATG
18628769 C
1 C
18628770 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18629668 original size:26 final size:26
Alignment explanation
Indices: 18629619--18629669 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18629609 CGTCCGATCC
* *
18629619 TAGACTGGGAATGGACTTCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18629645 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
18629670 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18631443 original size:25 final size:26
Alignment explanation
Indices: 18631415--18631466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18631405 CTGGTCCGAT
18631415 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18631440 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18631466 C
1 C
18631467 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18633984 original size:11 final size:11
Alignment explanation
Indices: 18633953--18633985 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18633943 CGGTCAGGTT
*
18633953 CTCCGGCGACG
1 CTCCGGCGATG
18633964 CTCCGGCGATG
1 CTCCGGCGATG
18633975 CTCCGGCGATG
1 CTCCGGCGATG
18633986 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.39, G:0.36, T:0.15
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:18634097 original size:26 final size:26
Alignment explanation
Indices: 18634068--18634118 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18634058 GGTCCAATCC
18634068 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18634094 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18634119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18635023 original size:4 final size:4
Alignment explanation
Indices: 18634970--18635121 Score: 54
Period size: 4 Copynumber: 38.5 Consensus size: 4
18634960 TCTTTTCTGT
* * *
18634970 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
* * *
18635017 TTTA TTTA TTTA TTTA TTT- TTCTA TTAA TGTT- TATA TGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA -TTTA TTTA
* * * * *
18635066 TATA GTTC TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
*
18635112 TTTT TTTA TT
1 TTTA TTTA TT
18635122 ATTATTTTTC
Statistics
Matches: 110, Mismatches: 23, Indels: 30
0.67 0.14 0.18
Matches are distributed among these distances:
3 23 0.21
4 70 0.64
5 16 0.15
6 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:18635119 original size:17 final size:17
Alignment explanation
Indices: 18634970--18635127 Score: 88
Period size: 17 Copynumber: 8.7 Consensus size: 17
18634960 TCTTTTCTGT
18634970 TTTATGTATT-TTA-TTA
1 TTTAT-TATTATTATTTA
* *
18634986 TTTATTATTATTATATG
1 TTTATTATTATTATTTA
* *
18635003 TATATTTTTACTTATTTA
1 TTTATTATTA-TTATTTA
*
18635021 TTTATTTATTTATTTTTCTA
1 TTTA-TTA-TTATTATT-TA
* *
18635041 TTAATGTTTATATGTATTTTA
1 TTTAT-TAT-TAT-TA-TTTA
*
18635062 TTTATATAGTTCTATATTTA
1 TTTAT-TA-TTAT-TATTTA
*
18635082 -TTATATATTATAATTTA
1 TTTAT-TATTATTATTTA
*
18635099 TTTATTATTATTATTTT
1 TTTATTATTATTATTTA
18635116 TTTATTATTATT
1 TTTATTATTATT
18635128 TTTCTTGTAA
Statistics
Matches: 109, Mismatches: 21, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
15 4 0.04
16 8 0.07
17 36 0.33
18 15 0.14
19 15 0.14
20 16 0.15
21 12 0.11
22 3 0.03
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTATTATTATTATTTA
Found at i:18635120 original size:14 final size:14
Alignment explanation
Indices: 18635103--18635130 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
18635093 AATTTATTTA
18635103 TTATTATTATTTTT
1 TTATTATTATTTTT
18635117 TTATTATTATTTTT
1 TTATTATTATTTTT
18635131 CTTGTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTATTATTTTT
Found at i:18635742 original size:20 final size:20
Alignment explanation
Indices: 18635717--18635756 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
18635707 TCCGGTGAAC
18635717 TTTCGACAAAAAAACCCAGA
1 TTTCGACAAAAAAACCCAGA
* *
18635737 TTTCGACGATAAAACCCAGA
1 TTTCGACAAAAAAACCCAGA
18635757 ATCCAGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.17
Consensus pattern (20 bp):
TTTCGACAAAAAAACCCAGA
Found at i:18636178 original size:17 final size:16
Alignment explanation
Indices: 18636144--18636216 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 16
18636134 TTAGATTAGG
* *
18636144 TTTATTTAATATTCTT
1 TTTATTTAATTTTATT
18636160 TTTATCTTAATTTTATT
1 TTTAT-TTAATTTTATT
* *
18636177 TTTATTTTATTTTTACT
1 TTTA-TTTAATTTTATT
* *
18636194 TTTCTTTATTTTCTATT
1 TTTATTTAATTT-TATT
18636211 TTTATT
1 TTTATT
18636217 ATTCTATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
16 13 0.28
17 33 0.70
18 1 0.02
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTAATTTTATT
Found at i:18636187 original size:11 final size:11
Alignment explanation
Indices: 18636159--18636216 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
18636149 TTAATATTCT
* *
18636159 TTTTATCTTAA
1 TTTTATTTTTA
18636170 TTTTATTTTTA
1 TTTTATTTTTA
18636181 TTTTATTTTTA
1 TTTTATTTTTA
*
18636192 CTTTTCTTTATT-
1 -TTTTATTT-TTA
*
18636204 TTCTATTTTTA
1 TTTTATTTTTA
18636215 TT
1 TT
18636217 ATTCTATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 2 0.05
11 28 0.72
12 7 0.18
13 2 0.05
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:18636196 original size:23 final size:23
Alignment explanation
Indices: 18636170--18636214 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
18636160 TTTATCTTAA
*
18636170 TTTTATTT-TTATTTTATTTTTAC
1 TTTTATTTATT-TTCTATTTTTAC
*
18636193 TTTTCTTTATTTTCTATTTTTA
1 TTTTATTTATTTTCTATTTTTA
18636215 TTATTCTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTATTTATTTTCTATTTTTAC
Found at i:18636212 original size:16 final size:16
Alignment explanation
Indices: 18636182--18636231 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
18636172 TTATTTTTAT
18636182 TTTATTTT-TACTTTTC
1 TTTATTTTCTA-TTTTC
18636198 TTTATTTTCTA--TT-
1 TTTATTTTCTATTTTC
18636211 TTTATTATTCTATTTTC
1 TTTATT-TTCTATTTTC
18636228 TTTA
1 TTTA
18636232 AATAAAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.21
14 7 0.24
16 10 0.34
17 6 0.21
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTTCTATTTTC
Found at i:18636223 original size:14 final size:13
Alignment explanation
Indices: 18636170--18636226 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 13
18636160 TTTATCTTAA
18636170 TTTTATTTT-TA-
1 TTTTATTTTCTAT
*
18636181 TTTTATTTTTACTTT
1 TTTTA-TTTT-CTAT
18636196 TCTTTATTTTCTAT
1 T-TTTATTTTCTAT
18636210 TTTTATTATTCTAT
1 TTTTATT-TTCTAT
18636224 TTT
1 TTT
18636227 CTTTAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 5 0.13
12 4 0.11
13 6 0.16
14 14 0.37
15 5 0.13
16 4 0.11
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTTCTAT
Found at i:18636315 original size:60 final size:60
Alignment explanation
Indices: 18636234--18636414 Score: 242
Period size: 60 Copynumber: 3.0 Consensus size: 60
18636224 TTTCTTTAAA
*
18636234 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAAAATATTTTTAGG-AAAAGTTGAAAGTATCAATTTTCCT
*** *
18636295 TAAAAAT-AAAATTTCAAAAAAGGGT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
18636353 TGGAAATCAAAGTTT-TAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCT
18636413 TA
1 TA
18636415 CACAAGAACA
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
58 36 0.35
59 17 0.17
60 43 0.42
61 7 0.07
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAAATTTCAAAAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18640310 original size:30 final size:30
Alignment explanation
Indices: 18640272--18640330 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
18640262 ATCAACAATG
* * *
18640272 GATGAAAAATGAGAAAAGAGAAA-AAAAAT
1 GATGAAAAAGGAAAAAAAAGAAAGAAAAAT
18640301 GATGAAAAAAGGAAAAAAAAGAAAGAAAAA
1 GATG-AAAAAGGAAAAAAAAGAAAGAAAAA
18640331 AGAAAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 16 0.64
31 5 0.20
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (30 bp):
GATGAAAAAGGAAAAAAAAGAAAGAAAAAT
Found at i:18640328 original size:13 final size:13
Alignment explanation
Indices: 18640306--18640361 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
18640296 AAAATGATGA
18640306 AAAAAGGAAAAAA-
1 AAAAA-GAAAAAAG
18640319 AAGAAAGAAAAAAG
1 AA-AAAGAAAAAAG
18640333 AAAAAGAAAGAAATG
1 AAAAAGAAA-AAA-G
18640348 AGAAAATGAAAAAA
1 A-AAAA-GAAAAAA
18640362 AGGAGATTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 16 0.43
14 8 0.22
15 2 0.05
16 7 0.19
17 4 0.11
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:18640342 original size:21 final size:20
Alignment explanation
Indices: 18640283--18640362 Score: 81
Period size: 21 Copynumber: 3.8 Consensus size: 20
18640273 ATGAAAAATG
*
18640283 AGAAAAGAGAAAAAAAATG-A
1 AGAAAAAAGAAAAAAAA-GAA
*
18640303 TGAAAAAAGGAAAAAAAAGAA
1 AGAAAAAA-GAAAAAAAAGAA
18640324 AGAAAAAAGAAAAAGAAAGAA
1 AGAAAAAAGAAAAA-AAAGAA
*
18640345 ATGAGAAAATGAAAAAAA
1 A-GA-AAAAAGAAAAAAA
18640363 GGAGATTCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
20 13 0.25
21 24 0.47
22 4 0.08
23 10 0.20
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (20 bp):
AGAAAAAAGAAAAAAAAGAA
Found at i:18640367 original size:17 final size:17
Alignment explanation
Indices: 18640305--18640367 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
18640295 AAAAATGATG
*
18640305 AAAAAAGGAAAAAAAAGA
1 AAAAAAGG-AGAAAAAGA
*
18640323 AAGAAAA-AAGAAAAAGA
1 AA-AAAAGGAGAAAAAGA
* * *
18640340 AAGAAATGAGAAAATGA
1 AAAAAAGGAGAAAAAGA
18640357 AAAAAAGGAGA
1 AAAAAAGGAGA
18640368 TTCAAATTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
16 3 0.08
17 27 0.75
18 2 0.06
19 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAAAGGAGAAAAAGA
Found at i:18641745 original size:40 final size:40
Alignment explanation
Indices: 18641610--18641901 Score: 372
Period size: 40 Copynumber: 7.0 Consensus size: 40
18641600 ATGATTGTAA
* *
18641610 AGGAGCAATTTACTTTCCAAAGTCATGGTGGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCATGGT-G-CTCTGTTTAG
*
18641652 AGGAGCAATTTA-TTTTCAAAAAGTTCATGGTCCTCTGTTTTAG
1 AGGAGCAATTTATTTTTC--AAAG-TCATGGTGCTCTG-TTTAG
*
18641695 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCATGGTGCTCTGTTTAG
*
18641735 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCATGGTGCTCTGTTTAG
** *
18641775 AGGAGC-ATTTACTTTCGCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTTCAAAGTCATGGTG-CTCTGTTTAG
18641816 AGGAGCAATTTATTTTTCAAAGTCATGGTGCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCATGGTGCTCTGTTTAG
* *
18641856 AGGAGCAATTTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAA-TTTAT-TTT-TCAAAGTCATGGTG-CTCTGTTTAG
18641900 AG
1 AG
18641902 AGCTTTGGTA
Statistics
Matches: 227, Mismatches: 11, Indels: 22
0.87 0.04 0.08
Matches are distributed among these distances:
39 5 0.02
40 85 0.37
41 51 0.22
42 29 0.13
43 33 0.15
44 24 0.11
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (40 bp):
AGGAGCAATTTATTTTTCAAAGTCATGGTGCTCTGTTTAG
Found at i:18641823 original size:81 final size:82
Alignment explanation
Indices: 18641610--18641901 Score: 405
Period size: 81 Copynumber: 3.5 Consensus size: 82
18641600 ATGATTGTAA
18641610 AGGAGCAATTTACTTTC-CAAAGTCATGGTGGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAA
1 AGGAGCAATTTACTTTCTCAAAGTCATGGT-GCCTCTGTTTAGAGGAGCAATTTATTTTTC--AA
*
18641673 AGTTCATGGTCCTCTGTTTTAG
63 AG-TCATGGTGCTCTG-TTTAG
* *
18641695 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTG-CTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
*
18641758 CGTGGTGCTCTGTTTAG
66 CATGGTGCTCTGTTTAG
* *
18641775 AGGAGC-ATTTACTTTCGCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
18641839 CATGGTGCTCTGTTTAG
66 CATGGTGCTCTGTTTAG
* * *
18641856 AGGAGCAATTTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAGAG
1 AGGAGCAA-TTTA-CTTTCTCAAAGTCATGGTGCCTCTGTTTAGAG
18641902 AGCTTTGGTA
Statistics
Matches: 188, Mismatches: 12, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
79 5 0.03
80 27 0.14
81 66 0.35
82 5 0.03
83 26 0.14
84 36 0.19
85 23 0.12
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
CATGGTGCTCTGTTTAG
Found at i:18641917 original size:1 final size:1
Alignment explanation
Indices: 18641911--18641964 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
18641901 GAGCTTTGGT
* * * * * *
18641911 AAAAAAAAAAAACAAAAAAACAAAAACAAAAAAAAACACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18641965 TGACAATGTT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:18641929 original size:12 final size:12
Alignment explanation
Indices: 18641912--18641957 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
18641902 AGCTTTGGTA
18641912 AAAAAAAAAAAC
1 AAAAAAAAAAAC
18641924 AAAAAAACAAAAAC
1 -AAAAAA-AAAAAC
*
18641938 AAAAAAAAACAC
1 AAAAAAAAAAAC
18641950 AAAAAAAA
1 AAAAAAAA
18641958 CAAAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
12 13 0.42
13 12 0.39
14 6 0.19
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:18641941 original size:21 final size:21
Alignment explanation
Indices: 18641914--18641964 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
18641904 CTTTGGTAAA
*
18641914 AAAAAAAAACAAAAAAACAAAAAC
1 AAAAAAAAAC--ACAAA-AAAAAC
18641938 AAAAAAAAACACAAAAAAAAC
1 AAAAAAAAACACAAAAAAAAC
18641959 AAAAAA
1 AAAAAA
18641965 TGACAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 12 0.46
22 4 0.15
24 10 0.38
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAAAAAAACACAAAAAAAAC
Found at i:18641951 original size:26 final size:27
Alignment explanation
Indices: 18641912--18641963 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
18641902 AGCTTTGGTA
18641912 AAAAAAAAAAAC-AAAAAAACAAAAAC
1 AAAAAAAAAAACAAAAAAAACAAAAAC
*
18641938 AAAAAAAAACACAAAAAAAACAAAAA
1 AAAAAAAAAAACAAAAAAAACAAAAA
18641964 ATGACAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAACAAAAAAAACAAAAAC
Found at i:18641970 original size:10 final size:9
Alignment explanation
Indices: 18641911--18641964 Score: 69
Period size: 9 Copynumber: 6.2 Consensus size: 9
18641901 GAGCTTTGGT
18641911 AAAA-AAAA
1 AAAACAAAA
18641919 AAAAC-AAA
1 AAAACAAAA
18641927 AAAACAAAA
1 AAAACAAAA
18641936 ACAAA-AAAA
1 A-AAACAAAA
*
18641945 AACACAAAA
1 AAAACAAAA
18641954 AAAACAAAA
1 AAAACAAAA
18641963 AA
1 AA
18641965 TGACAATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
8 14 0.35
9 23 0.57
10 3 0.08
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAACAAAA
Found at i:18642210 original size:4 final size:4
Alignment explanation
Indices: 18642166--18642307 Score: 52
Period size: 4 Copynumber: 35.5 Consensus size: 4
18642156 TCTTTTGTAT
* *
18642166 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * *
18642212 TTTA TTTA TTT- TTCTG TTAATA TTTA TATGTA TTTTA TTTA TATA ATTC
1 TTTA TTTA TTTA TT-TA TT--TA TTTA T-T-TA -TTTA TTTA TTTA TTTA
* *
18642261 TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA -TTA TTTA
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
18642306 TT
1 TT
18642308 ATTATTTTTC
Statistics
Matches: 107, Mismatches: 16, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
3 27 0.25
4 58 0.54
5 14 0.13
6 7 0.07
7 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:18642273 original size:17 final size:18
Alignment explanation
Indices: 18642168--18642313 Score: 69
Period size: 20 Copynumber: 8.2 Consensus size: 18
18642158 TTTTGTATTT
*
18642168 TATTATTTA-TTATTATTA
1 TATTATATATTTATTA-TA
* *
18642186 TATGTATATTTTTACTTATT
1 TAT-TATATATTTA-TTATA
* * *
18642206 TATTTATTTATTTATTTTTC
1 TA-TTATATATTTA-TTATA
* *
18642226 TGTTA-ATATTTA-TATG
1 TATTATATATTTATTATA
18642242 TATT-T-TATTTA-TATA
1 TATTATATATTTATTATA
*
18642257 -ATTCTATATTTATTATA
1 TATTATATATTTATTATA
18642274 TATTATA-ATTTATT-TA
1 TATTATATATTTATTATA
18642290 TTATTATTATTATTTATTAT-
1 -TATTA-TA-TATTTATTATA
18642310 TATT
1 TATT
18642314 TTTCTTGTAA
Statistics
Matches: 99, Mismatches: 15, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
14 3 0.03
15 10 0.10
16 13 0.13
17 16 0.16
18 16 0.16
19 11 0.11
20 25 0.25
21 5 0.05
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TATTATATATTTATTATA
Found at i:18642295 original size:3 final size:3
Alignment explanation
Indices: 18642266--18642313 Score: 51
Period size: 3 Copynumber: 14.7 Consensus size: 3
18642256 AATTCTATAT
*
18642266 TTA TTA TATA TTA TAA TTTA TTTA TTA TTA TTA TTA TTTA TTA TTA TT
1 TTA TTA T-TA TTA TTA -TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TT
18642314 TTTCTTGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
3 28 0.70
4 12 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:18642308 original size:16 final size:16
Alignment explanation
Indices: 18642163--18642313 Score: 81
Period size: 16 Copynumber: 9.6 Consensus size: 16
18642153 TTTTCTTTTG
18642163 TATT-TTATTATTTAT
1 TATTATTATTATTTAT
*
18642178 TATTATTA-TATGTA-
1 TATTATTATTATTTAT
*
18642192 TATTTTTACTTATTTA-
1 TATTATTA-TTATTTAT
18642208 T-TTATTTATTTATTT-T
1 TATTA-TTA-TTATTTAT
* * *
18642224 T-CTGTTAATATTTA-
1 TATTATTATTATTTAT
18642238 TATGTATT-TTATTTA-
1 TAT-TATTATTATTTAT
* *
18642253 TATAATTCTATATTTAT
1 TATTATTAT-TATTTAT
*
18642270 TATATATTATAATTTATT
1 TAT-TATTATTATTTA-T
18642288 TATTATTATTA-TTATT
1 TATTATTATTATTTA-T
18642304 TATTATTATT
1 TATTATTATT
18642314 TTTCTTGTAA
Statistics
Matches: 107, Mismatches: 16, Indels: 25
0.72 0.11 0.17
Matches are distributed among these distances:
14 16 0.15
15 24 0.22
16 44 0.41
17 15 0.14
18 8 0.07
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TATTATTATTATTTAT
Found at i:18643210 original size:8 final size:8
Alignment explanation
Indices: 18643197--18643223 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
18643187 TTTTTTTTCA
18643197 TTTATTTG
1 TTTATTTG
18643205 TTTATTTG
1 TTTATTTG
18643213 TTTATTTG
1 TTTATTTG
18643221 TTT
1 TTT
18643224 TTTTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (8 bp):
TTTATTTG
Found at i:18643278 original size:17 final size:16
Alignment explanation
Indices: 18643244--18643283 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
18643234 TTAGATTAGG
*
18643244 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
18643260 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
18643277 TTTATTT
1 TTTATTT
18643284 TTCTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:18643317 original size:14 final size:14
Alignment explanation
Indices: 18643270--18643327 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
18643260 TTTATCTTAA
18643270 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
18643282 TTTTCTTTTACTGT
1 TTTTATTTTTCTAT
18643296 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
18643311 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
18643325 TTT
1 TTT
18643328 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:18643431 original size:58 final size:58
Alignment explanation
Indices: 18643335--18643629 Score: 414
Period size: 58 Copynumber: 5.0 Consensus size: 58
18643325 TTTCTTTAAA
* *
18643335 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCT
**
18643396 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
18643454 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
18643514 TAAAAATAAATTTCCAAAAAAA-TATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
18643572 TAAAAATAAATTTTCAAAAAAAGTATTTTTCGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
18643630 CTACATAAGA
Statistics
Matches: 211, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
57 1 0.00
58 97 0.46
59 62 0.29
60 44 0.21
61 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18643484 original size:118 final size:117
Alignment explanation
Indices: 18643335--18643629 Score: 441
Period size: 118 Copynumber: 2.5 Consensus size: 117
18643325 TTTCTTTAAA
18643335 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* *
18643400 AATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
64 AATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
18643454 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
18643519 ATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
18643572 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTCGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
18643630 CTACATAAGA
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
117 47 0.29
118 89 0.56
119 24 0.15
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18643511 original size:28 final size:28
Alignment explanation
Indices: 18643420--18643511 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
18643410 CAAAAAAGGG
18643420 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
18643448 TTTCCTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
18643479 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
18643508 TTTT
1 TTTT
18643512 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:18645152 original size:26 final size:26
Alignment explanation
Indices: 18645116--18645167 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18645106 TGATCTGATT
18645116 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
18645142 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18645168 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18646243 original size:904 final size:898
Alignment explanation
Indices: 18644126--18649258 Score: 6884
Period size: 895 Copynumber: 5.7 Consensus size: 898
18644116 GTTCTTAATG
*
18644126 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGATCCCAGCATG
1 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18644191 TGCTGCTGCAACCCTCGGTCCGATCCGATCTGAGACTGGGAATGAACTCTGTATGCTTAGATTGG
66 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
18644256 GAATGAGCTCCGTATGCCTGAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGG
131 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
** * * * * **
18644321 GGCGGGATGTACAAGCTGTGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCATGCTGCTGCA
196 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACA
* * ** * * * * * * *
18644386 ACCCTCGGTCTGGTCTAATCTTAGATTAGGAATGAACTCTGTATGCCAAAGCCAATCGACAAAAT
261 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
18644451 GAGCGGGCGGGCGGGCGTGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATC
326 AAACGGGCGGGCGGGGGTG--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
18644516 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
389 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGC
* * *
18644581 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCTAGACGACTCGTTTA
454 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** * * ** *
18644646 CTATTTTTCACAATTTTTGAAACTTTTTACGGTTTAGGATTTTTGAAAATTTTTTCGAAAACAGT
519 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATT
18644711 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
584 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
18644776 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACAATTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
18644841 ATGGCTACTAGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18644906 TTGATGAGACATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
779 TTGATGAGAGATAGG-AGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
18644971 CACCACCCTCTGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG--T---
843 CACC-CCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTCTCGC
* *** *
18645023 -T-CTCCGACGATGGTACCCCGGTAAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATG
1 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18645086 TGCTGTCGAAACCCTCGGTCTGATCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
66 TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
18645151 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
131 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
* * *
18645216 GGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCACA
196 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACA
* * *
18645281 ACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
261 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * *
18645346 AAACGGGCTGGCAGGTGGGTGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGAATT
326 AAACGGGCGGGC-GG-GGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *** * *
18645411 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAAAGTAATTTTTATGGC
389 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGC
* *
18645476 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTAATGGCAAGACGACTCGTTTT
454 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
18645541 CTATTTTTCATGATTTTTGAAAGTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGATT
519 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATT
18645606 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCA-AAAAAAATTCAGC
584 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGC
* * * * *
18645669 CAAAAACTCGAAGTCTACAATATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTT
648 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
18645734 AATAGCTATTGGCAGCTAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * *
18645799 TTTGATAAGTGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
778 TTTGATGAGAGATAG-GAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
18645864 ACACCCCTTCCGGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCTGGATCTCCGAC
842 ACACCCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-TCT-CG-C
* *
18645924 AATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGCAT
1 -ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
18645989 GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTGGACAGGGAATGAACTCCGTATGCTTAGACTG
65 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
18646054 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCTGCCAGAG
130 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* * * * ** * * * **
18646119 GGGTGGGATGCACAAGCCGGGGATCGACCGGGTCTCCCTCTACGTGCTGCCAATCCGGTTGCCGT
195 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCAC
* *
18646184 AACCGTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
260 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * ** * * * *
18646249 CGAGCGGGCGGGCGGGCATGCAGGCACTACGTCGGCCAAAGAGACAGGATGCGTAAGCTGTGGAT
325 CAAACGGGCGGGCGGGGGTG--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
18646314 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGG
388 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGG
*
18646379 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCGTTT
453 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
18646444 TCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAAATTTTTTTGGAAGGAG
518 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
**
18646509 TTTTACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
583 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
18646574 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
648 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18646639 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
18646704 TTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
778 TTTGATGAGAGATAGG-AGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
18646769 ACACCACCCTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG--T---
842 ACACC-CCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTCTCGC
* * * *
18646822 -T-CTCCGATGATGGTGCCCC-AGCAAAGAAAACTACGGCACCAGCACATGCCCGAGCCTAGCAT
1 ATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
18646884 GTGCTGTCGAAACCCTCGGTCCGATCCGATCTTAGACTGAGAATCAACTCTGTATGCTTAGACTG
65 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
18646949 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
130 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* *
18647014 GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
195 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCAC
18647079 AACCCTCAGT-CGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
260 AACCCTCAGTCCG-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
18647143 ACAAACGGGCGGGCGGGCGGGTGGGCACTACGTCTGCCAGAGAGACGGGATGCGCAAGCCGTGGA
324 ACAAACGGGCGGGC-GG-GGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** *
18647208 TCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGTGTCCAAAGCAATTTTTAT
387 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG-CCAATGCAATTTTTAT
*
18647271 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCGT
451 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
18647336 TTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGACGG
516 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
18647401 ATTTTTGGCCCTAAACTTGGTAGACATGATCCTTGT-TTTTTTGTTGGCATGCA-AAAAACAATT
581 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAA-AATT
* * * *
18647464 CAGCCAAAAACTCGAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACA
644 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18647529 CTTTAATAGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
709 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18647594 GAGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
774 GAGGTTTGATGAGAGATA-GGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
18647659 GCGCACA-CCCCTCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGG
838 GCGCACACCCCCT-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG-TCTC--G
18647722 C
898 C
* *
18647723 AATGCTCCGACGATGGTGCCACGACGAAGAAAAATACGGCACCAGGACATGCCCGAGCCCAGCAT
1 -ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
18647788 GTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTGGATTGGGAATGAACTCCGTATGCTTAGACTG
65 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
18647853 GGAATGGACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGT-CGGGCGCTCAGCCGGCCAGAG
130 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* * * * * ** * * *
18647917 GGGTGGGATACGTAAACC-GGGATCGGTATGGTCCCCCTCTATGTGCT-CTCGATCCTACTACCA
195 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGC-CGATCCTGCTGCCA
* * *
18647980 CAACCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCGATC--
259 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGA
* * * * *
18648043 AA-ATA-GAGCGGGC------GGGCACTAC-ACCGCCAGAGAGACTGGGATGCGCAAGCCATGGA
323 AACAAACGGGCGGGCGGGGGTGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGA
* *
18648099 TCG-TAGGGTGGGTAGGTGGGATTTAGGCACATCTTCATATTTCTGCATG-CAATGCATTTTTTA
387 TCGATAGGGT-GGTAGGTGGG-TTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTA
*
18648162 TGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAAACGACTCG
450 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
18648226 -TTTCTATTTTTCACGATTTTTTGAAAACTTTTTGA-GGTTCGGGAATATTTTTAAAATTTTTTA
515 TTTTCTATTTTTCACGA-TTTTTG-AAACTTTTT-ACGGTTCGGG-AT-TTTTTAAAATTTTTT-
*
18648289 C-GAAGGCGTTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTTGTATTTTTTTTGGCATGCACAA
574 CGGAAGG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTTTTGGCATGCACAA
* * *
18648352 AAAAATTTCAGCTAAAAACT-TAAGTGTACAAGATTTTGTGGCCATTGTGAAAAAAGTATCCCCA
637 AAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCA
* * *
18648416 TTTCAAACACTTTAAATGGCTACTGGCAGCAAACCTTGTCAAATCTCAAGTGCTCTTTAAGGGGG
700 TTTCAGACACTTT-AATGGCTACTGGCAGCAAACC-TGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18648481 TATGAGTTCTCGAGGTTTGATGAGGGATAGGAGCCAATAT-AGGGCCCAAGTA-CAGCACCCATC
763 TGTGAGTTCTCGAGGTTTGATGAGAGATAGGAGCCAATATAAGGG-CCAAGTACCAGCACCCATC
* * * *
18648544 ACACATCATGTGCGCAGA---CC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
827 GCACATCATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
*
18648605 TTCTCCGAC
892 GTCT-CG-C
* * * *
18648614 GATGCTCCG-CGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGGACATG-CCGAG-CCAGCAT
1 -ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18648676 GTGCTGCTGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
65 GTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
18648741 GGAATGAACTCTGTATGCCTAAGTCAACCTACGAGACGGGCGTGTGGGCGCTCAG-CTGGCCAGA
130 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGA
* * * * **
18648805 GGGGCGGGATGCGTAAGCCGGGGATTGATCGGGTCCCCCTTTGTGTGCTGCCAATCCTGCTGCTG
194 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCA
* * * * *
18648870 TAACCCTCAGTTCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAA
259 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18648935 ACAAGCGGGCGGGCGTACGGGCGGGCACTACG-CGG-CACGAGACATGGGATGCGCAAGCCGT-G
324 ACAAACGGGCGGGCG--GGGGTGGGCACTACGTCGGCCA-GAGAGACGGGATGCGCAAGCCGTGG
* ** * *
18648997 ATCGATAGGGTGGTAGG-AGGTTTATAACACATCTTCACATTTCCACATGCCAATGCCAA-TTTT
386 ATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTACATGCCAATG-CAATTTTT
* *
18649060 ATGGCCTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTC
449 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
18649125 GTTTTCTATTTTTCATGATTTTGGAAAGTTTTTGCGGTTCGGAATTTTTTAAAATTTTTTCGGAA
514 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
18649190 GGCA--TTTGGCCCCAAACTTGGTAGACGTTATCCTTGTA-TTTTTTTGGCATGCACAAAAAAAA
579 GG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAA
18649252 TTCAGCT
642 TTCAGCT
18649259 NNNNNNNNNN
Statistics
Matches: 3747, Mismatches: 392, Indels: 197
0.86 0.09 0.05
Matches are distributed among these distances:
888 106 0.03
889 39 0.01
890 155 0.04
891 91 0.02
892 126 0.03
893 104 0.03
894 629 0.17
895 1001 0.27
896 106 0.03
897 68 0.02
898 76 0.02
899 74 0.02
900 62 0.02
901 34 0.01
902 95 0.03
903 40 0.01
904 697 0.19
905 203 0.05
906 41 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACA
ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
AAACGGGCGGGCGGGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGAGATAGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTCTCGC
Found at i:18646953 original size:26 final size:26
Alignment explanation
Indices: 18646914--18646966 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18646904 CCGATCCGAT
*
18646914 CTTAGACTGAGAATCAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
18646940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
18646966 C
1 C
18646967 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:18650855 original size:26 final size:26
Alignment explanation
Indices: 18650826--18650881 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18650816 CCGGTCCGAT
*
18650826 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18650852 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18650878 CTTA
1 CTTA
18650882 AGGCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18651750 original size:26 final size:26
Alignment explanation
Indices: 18651710--18651762 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18651700 CCAGTCTGAT
*
18651710 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCATATG
*
18651736 CTTAGACTAGG-AATGAATTCCATATG
1 CTTAGACT-GGTAATGAACTCCATATG
18651762 C
1 C
18651763 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCATATG
Found at i:18652633 original size:26 final size:26
Alignment explanation
Indices: 18652597--18652649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18652587 CCGGTTTGAT
*
18652597 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
18652623 CTTAGACTGGGAACGGACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
18652649 C
1 C
18652650 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:18652734 original size:887 final size:879
Alignment explanation
Indices: 18650259--18653326 Score: 3944
Period size: 887 Copynumber: 3.5 Consensus size: 879
18650249 NNNNNNNNNN
*
18650259 GGGTTTAGGCACATCTTCGTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18650324 ATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
66 ATGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * * *
18650389 TTTTACCTTTTTACGGTTCGAGATTTTTTAAATTTTTTTTTGGAAGGAGTTTTGG-CTCCAAACT
130 TTAAAACTTTTTACGGTTCGGGATTTTTTAAA-ATTTTTTTGAAAGGAGTTTTGGTC-CCAAACT
* * *
18650453 TAGTAGACGTGATCCTTGTATTTTTGTT-GCTATGCACAAAAAATTTCAGCTAAAAACTCGAATT
193 TGGTAGACGTGATCCTTGTATTTTTGTTGGC-AT-CACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
18650517 GTACAAGA-TTTGTGACCATTTG-AAAAAGTGACCCCATTTCGGATACTTTAATGGCTACTGGCA
256 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
18650580 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
321 GCAAACCTGTAAAATCTC-AATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
18650645 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGTACA----CCC-A--
385 GGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCCGACC
** * * * * *
18650703 ATC-A--CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCTGACGAAGAAATA
449 CCCGATGTCGGAACCCCAATACAGCCGGTCAGGTTCTCCGAC-ATGGTGCCCCGACGAAGAAAAA
* * *
18650765 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGTTGTTGCAACCCTCGGTCCGGTCCGATCTTA
513 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA
* * * * * *
18650830 GACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAAGTCCGTATGCTTAAGGCAACCCACGA
578 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGA
* * *
18650895 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTC
643 AACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATC-ATCGGGTC
* * * * * * * *
18650960 CCCCTCTACATGCTTTCGATCCTGCTACAGCAGCCCTTGGTCCGGTTCGATCTTGGTCTGCGAAT
707 CCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCGATCTTAGACTGGGAAT
* * *
18651025 GAACTCCGTATGCCTAAGCCAACCGACGAAACTGAAGCGGCGGGTGGCGTGCGGGCACTACGCCG
772 GAACTCTGTATGCCTAAGCCAACCGACGAAAC-G-AGCGG-GCG-GGCGGGCGGGCACTACGCCG
* * **
18651090 GCCAGA-ATACGGGATGCGCAAGCCGGTTGGATCGATAGGG-GACCAGGT
833 ACCAGAGAGACGGGATGCGCAAGCC-G-TGGATCGATAGGGTG-GTAGGT
* * * *
18651138 -GGTTTA-GCACATCCTCAATATTTCTGGCATGCCAACTGCCATTTTAATGGCTTGTAAAATTCA
1 GGGTTTAGGCACATCTTC-ATATTTCT-ACGTGCCAA-TGCCATTTTTATGGCTTGT-AAATTCA
18651201 TACAAGTGGTCCCTTAAGCCTTCACAG-AATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
62 TACAA-TGGTCCCTTAAGCCTTCAC-GTAA-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
18651265 ACTA-TTTGAAACTTTTTACGGTTC-GAATTTTGT-AAATTTTTTTGGAA-GTGTTTT-GTCCCA
124 ACGATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCC-
*
18651325 AAACTTGGTAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
188 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-CACAAAAAAATTCAGCTAAAAACTCG
*
18651389 AAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
252 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
18651454 GCCAGCAAAACTTGTAAAATCTGAA-AGCTCTTTAA-GGGG-GTGAGTTCTGGAGGTTGGATGAG
317 GGCAGC-AAACCTGTAAAATCTCAATA-CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
18651516 GGATAGGGGCCAATATAAGGGCCAAGTA-CATGCACCCATCACACATCATGTGTGCACACCC-CC
380 GGATAGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCACACATCATGTGCGCACACCCTCC
* * * * **
18651579 CGACCCCCCCGATCGTCGGAACCCCAATGCCA-CCGGTCAGGTTCTCCGGC--GATGCTCCGGTG
444 CGA--CCCCCGAT-GTCGGAACCCCAAT-ACAGCCGGTCAGGTTCTCCGACATGGTGCCCCGACG
* * ** * * * * *
18651641 AAGAAAAATACGACACCAGCACATGCCTGAGCCTAGCATGTGCTTCTGTAACCCTCAGTCCAGTC
505 AAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTC
* * *
18651706 TGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTAGGAATGAATTCCATATGCCTAAGTCA
570 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * * * * *
18651771 ACCCATGAAACGAGCTTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCG
635 ACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATC-
* * * *** *
18651836 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAATCTGGTTCGATCTTAGA
699 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCGATCTTAGA
*
18651901 CTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTAC
764 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAC
* *
18651966 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGAT
829 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
18652017 GGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
18652082 ATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACG-TAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
18652147 TTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACAT
130 TT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACTT
* * * *
18652212 GGTAGACGTGATCCTTGTATTTTTGTTGGCAT-ATAAAAGAATTCAACTAAAAACTTGAAGTGTA
194 GGTAGACGTGATCCTTGTATTTTTGTTGGCATCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
18652276 CAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACA
259 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18652341 AACCTGTAAAATCTTAACTACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
324 AACCTGTAAAATCTCAA-TACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GG
18652406 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTTCCCGACCCC
387 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC-TCCCGACCCC
*
18652471 CTGATTGTCGGAACCCCAATACAGTCGGTCAGGTTCTCCGACAATGGTGCCCCGACGAAGAAAAA
451 C-GA-TGTCGGAACCCCAATACAGCCGGTCAGGTTCTCCGAC-ATGGTGCCCCGACGAAGAAAAA
* * * * *
18652536 TGCGGCACTAGCACATGCCCAATCCCAGCATGTGCTGCTGCAACCGTTGGTCCGGTTTGATCTTA
513 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA
* * * *
18652601 GACTGGGAATGAACTCCATATGCTTAGACTGGGAACGGACTCCATATGCCTAAGTCAACCTAAGA
578 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGA
* * * * * *
18652666 AATGAGCGTCCGGGCGCTCAACCGGCTAAAGGGGCGGGATAAGCAAGCCAGGGATCACCCGGGTC
643 AACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATCA-TCGGGTC
* * * * * *
18652731 CCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTTGGTCCAG-TCTGACCTTAGAGTAGGAA
707 CCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTC-GATCTTAGACTGGGAA
* * *
18652795 TGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGGCGGGTACTACACC-AG
771 TGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGA-
*
18652858 CCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
834 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18652904 GGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
18652969 ATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACAACTCGTTTTCTATTTTTGACGATT
66 ATGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
18653034 TTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGAAAGTAGTTTTCGCCCCGAACTT
130 TT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACTT
* * *
18653099 GGTAGACGTGATCCCTATA-TTTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATG
194 GGTAGACGTGATCCTTGTATTTTTG-TTGGCAT-CACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
18653163 TACAAGATTTTGTGGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGGC
257 TACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGC
* * *
18653228 AGCAAACCTGTAAAATCTCATGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
320 AGCAAACCTGTAAAATCTCA-ATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
18653293 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
384 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
18653327 GAACTCCGTA
Statistics
Matches: 1908, Mismatches: 215, Indels: 121
0.85 0.10 0.05
Matches are distributed among these distances:
874 2 0.00
875 43 0.02
876 146 0.08
877 64 0.03
878 109 0.06
879 70 0.04
880 171 0.09
881 81 0.04
882 114 0.06
883 62 0.03
884 297 0.16
885 6 0.00
886 10 0.01
887 554 0.29
888 1 0.00
889 37 0.02
890 79 0.04
891 62 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (879 bp):
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCCGACCCCCGATG
TCGGAACCCCAATACAGCCGGTCAGGTTCTCCGACATGGTGCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCG
TGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATCATCGGGTCCCCCTCTGC
GTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGT
ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
Found at i:18654222 original size:26 final size:26
Alignment explanation
Indices: 18654184--18654237 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
18654174 GGTCTGATCT
*
18654184 TAGACTGGCAATGAACTCCGTATGCC
1 TAGACTGGCAATGAACTCCATATGCC
*
18654210 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGCAATGAACTCCATATGCC
18654236 TA
1 TA
18654238 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCATATGCC
Found at i:18655108 original size:26 final size:26
Alignment explanation
Indices: 18655079--18655131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18655069 CTGGTCCGAT
*
18655079 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTCGG-AATGAACTCCATATG
18655105 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
18655131 C
1 C
18655132 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:18655269 original size:897 final size:895
Alignment explanation
Indices: 18653327--18656025 Score: 3761
Period size: 897 Copynumber: 3.0 Consensus size: 895
18653317 CCAGCACCCA
* * * * *
18653327 GAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCACTCA-ACTGGCCAGAGGGGC
1 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCT-GCCAGAGGGGC
* * * ** * * * *
18653391 GGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTTTGCGTGTTGGAGATCCTG-CTGTTGCAAC
65 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCAGATCC-GACTGCTGCAGC
** * * *
18653455 CCTCAATCTGATCCGATCGTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGA
129 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAACGA
* * *
18653520 GC-GG--GCGGGCGGGCACTACGTCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGG
193 GCGGGCAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGG
* *
18653582 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
258 TGGTATGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
18653647 TTCATGCAATGGTCCCTTAAGCCTTTACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTT
323 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCAAGGCAAGACGACTCATTTTCTATTTT
* * * * * *
18653712 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGGTTTTAGCCC
388 TCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAGTTTTGGCCC
* * *
18653777 TAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
453 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
18653842 GAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTAC
518 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * ** * *
18653907 TGGTAGCAAACCTGTACAATCTAAAATGCGATTTAAGGGGGTGTGAGTTCTTAATGTTTGATGAG
583 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAG
* *
18653972 GGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
647 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
* * * * * * * * *
18654037 GGCCCCCCCGATCACCGGAACCCGAATACCGGCGGTCAGGTTCTCTGGCGAGATGCTCCGACGAT
712 CGACCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGC--GATGCTCCGATGAT
* * * * *
18654102 GGTGCCTTC-ATGAAGAAACATGCGGCACCAACACATGCCCGAGAC-CGCATGTGCTGCCGCAAC
775 GGTGCC-ACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTCGCATGTGCTGCCGCAAC
*
18654165 CCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAGACTGGGAAT
839 CCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAT
*
18654222 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GTCCAGAGGGGC
1 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCTG-CCAGAGGGGC
* * * *
18654286 GGGATGTGCAAGCCGGGGATCGACCGTGTCCCCCTCTCTGTGCTGCCA-ATCCGACTGCTGCAGC
65 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTG-CAGATCCGACTGCTGCAGC
* *
18654350 CCTCGGTCTGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGACAAACGAG
129 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAACGAG
* * *
18654415 CGGGCAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAGGCCATGGATCGATAGGGG
194 CGGGCAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA-GGG
*
18654480 TGGTATGTGGG-GTAGGTACATCTTCATATTTCTGCGTTGCCAATGCCATTTTTATGGCTTGTAA
258 TGGTATGTGGGTTTAGGTACATCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAA
*
18654544 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCAAGGCAAGACGATTC-TTTTCTA-TT
322 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCAAGGCAAGACGACTCATTTTCTATTT
* *
18654607 TTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGC
387 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGAGTTTTGGC
* * * *
18654672 CCCAAACTTGGTAAACATGATCCTCGTATTTTAGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
451 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18654737 TCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
516 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
18654802 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATG
581 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTTGAGGTTTGATG
* *
18654867 AGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCC
645 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCC
* * * *
18654932 CCCCGACCCCTCGATCGCCGGAACCCCAATGTCACCGATCAGGTTCTCCGGCGATGCTTCGATGA
709 CCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGATGA
* *
18654997 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTCGCATGTGCTGCTGCAAC
774 TGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTCGCATGTGCTGCCGCAAC
* *
18655062 CCTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTCGGAAT
839 CCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAT
* *
18655119 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATCCGGGCGCTCAGCCTGCCAGAGGGGTG
1 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCTGCCAGAGGGGCG
* * * *
18655184 GGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTATGTGCTACTGATCCGACTGCTGTAGCCC
66 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCAGATCCGACTGCTGCAGCCC
* * * *
18655249 TCGGTCCGGTCCGGTCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGC
131 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAACGAGC
* *
18655314 GGGCAGGCAGGCGGGTGGGTGGGCACTACGTCGGTCAGAGAGACGGGATGCGCAAGCCATGGATC
195 --G--GGCA-GC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
* *
18655379 GATAGGGTGGTATGTGGGTTTAGGTACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGC
251 GATAGGGTGGTATGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* *
18655444 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTT
316 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCAAGGCAAGACGACTCATTTT
* * * *
18655509 CTATTTTTCATGATTTTTAAAACTTTTTGAGCTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGT
381 CTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGAGT
18655574 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
445 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
18655639 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
510 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
18655704 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTGTCGAGGT
575 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTTGAGGT
* *
18655769 TTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGCGCA
639 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * * * * *** *
18655834 CA-CCCCTCGGCCCCCCGATCGTCGGAACTCCAATGCCGTCGATCAAGTTCTCCAATGATACTCC
704 CACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCC
* * * ** * * * * *
18655898 GGTGATGGTGCCAGGGC-ACAGAAAAATATGGCACCAGTAGATGCCCGAGCCTAGCATGTGTTAC
769 GATGATGGTGCCACGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCTCGCATGTGCTGC
* * * * * *
18655962 CGCAACCCTTGCTCCGATTTGATCTTAGACTGGGAAATGAACTCCGTATGCTTAGACTGGGAAT
833 CGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGCAATGAACTCCGTATGCTTAGACTGGGAAT
18656026 AGGGTCAACC
Statistics
Matches: 1603, Mismatches: 169, Indels: 52
0.88 0.09 0.03
Matches are distributed among these distances:
894 10 0.01
895 156 0.10
896 102 0.06
897 559 0.35
898 142 0.09
900 1 0.00
902 4 0.00
903 2 0.00
905 1 0.00
906 216 0.13
907 107 0.07
908 299 0.19
909 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCTGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCAGATCCGACTGCTGCAGCCC
TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAACGAGCG
GGCAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
TATGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCAAGGCAAGACGACTCATTTTCTATTTTTCA
TGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGAC
CCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGATGATGGTGCC
ACGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTCGCATGTGCTGCCGCAACCCTCGGT
CTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAT
Found at i:18656265 original size:26 final size:27
Alignment explanation
Indices: 18656215--18656268 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
18656205 TCCGGACGAT
18656215 CTTAGACTGGGAAATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
*
18656242 CTTAGACTGGG-AATGAACTTCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
18656268 C
1 C
18656269 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:18657141 original size:26 final size:25
Alignment explanation
Indices: 18657112--18657163 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18657102 TCGGTCCGAT
18657112 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACT-CGTATG
*
18657138 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGAATGGGAATGAACTCGTATG
18657163 C
1 C
18657164 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGAATGGGAATGAACTCGTATG
Found at i:18658030 original size:26 final size:26
Alignment explanation
Indices: 18657992--18658044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18657982 CCGATCCGAT
* *
18657992 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18658018 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18658044 C
1 C
18658045 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18658782 original size:893 final size:884
Alignment explanation
Indices: 18656039--18659012 Score: 3703
Period size: 881 Copynumber: 3.3 Consensus size: 884
18656029 GTCAACCACC
* * * *
18656039 AGCACCCATCGTACATAATGCGCGCACACGCCCCCCGGCCCCCTGATCACCAGAACCCCAATGCC
1 AGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCACCAGAACCCCAATGCC
* * * * ** * *
18656104 G-CGGTTAGGTTCTTCGGCGATGCTACGGCGATGGTGCCCCGGTGAAGAAAAATACG-GACCAGC
65 GCCGGTCAGGTTCTCCGG-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGC
* * *
18656167 ACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTC-ATCCGGA--CGATCTTAGACTGGGAAA
129 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCC-GATCCGATCTTAGACTGGG-AA
*
18656229 TGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGT
191 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * * * * ** * *
18656294 GCGGGCACTCAGTCGGGCGGAGGGGTGGGATACGCAAGCTGGGGATCGATCGAGTCTCCCTCCGC
256 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCTGGGGATCGATCGGGTCT-CCT-CTC
* * * * *
18656359 GTGTTACCGATC-CTGCT-ACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGC
319 GTGCT-GCGATCTCTACTAACCCTTGGT-CGGTCCGATCTTAGA-TTGGAATGAACTCTGTATGC
* * *
18656422 CTAAGCCAACCGACGAAACCAGCGAGCGAAAGGGCGGGCGGGCACTACGCCAGCCATAGAGACGG
381 CTAAGCCAACCGACG--A--A---A-CGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGG
*
18656487 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
438 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATG
*
18656552 CCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
503 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * **
18656617 TT-TCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
568 TTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* *
18656681 AAAATTTTTTCGGAAGGAGTTTTGACCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
633 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18656746 TTGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
698 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAATG
* * *
18656811 TCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAG
762 TCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTT-AA
*
18656876 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
826 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA
* * * * ** *
18656935 AGCACCAATCGCACATCATGTGCACACA-CCGCCCGGTGCCCCCGATCGTCGGAACCCCAATGCC
1 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCACCAGAACCCCAATGCC
* * *
18656999 ACCGGTCAGGTTCTCCGGCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
65 GCCGGTCAGGTTCTCCGGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCA
* * * *
18657064 CATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAATGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
* * *
18657129 CTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGA
195 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * ** * * * *
18657193 GCGCTCAACCGGCCAGAGAGGCGACATGCGCAAGCCGGGGATCGATCGGGAC-CCCCTC-TGC-G
260 GCGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCTGGGGATCGATCGGGTCTCCTCTCGTGCTG
* *
18657255 CG--CTGCCAC-AACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGC
325 CGATCT-CTACTAACCCTTGG-TCGGTCCGATCTTAGATT-GGAATGAACTCTGTATGCCTAAGC
* * ** ** *
18657317 CAACCGATGAAACGAGCGAACGGGCGGGCACTGTGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
387 CAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGT
* *
18657382 TGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTT
452 GGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
18657447 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTA-TGGCAAGACGACT
517 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGGCAAGACGACT
* * *
18657511 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAA
582 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
18657576 AGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
647 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18657641 TCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCTCCATTTGAGAC
712 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGAC
*
18657706 ACTTTAACGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTC
776 ACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTC
* * ** * * * *
18657771 CAGGTTTGATGAGGGAAAGGGGGATATTATACGGGCTAACTACCA
841 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CA
* * * * **
18657816 A-CACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCACCGATCACCGGAACCCTAATGATG
1 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCAGAACCCCAATGCCG
** * * * *
18657880 GAGGTCAGGTTCTCTGAGGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAGGTGACA-CAGCA
66 CCGGTCAGGTTCTCCG-GGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCA
* * *
18657944 CATGCCCAAGCCCAACAAGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
130 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
* * *
18658009 CTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
195 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * * **
18658074 GCGCTCAGTCGGCCAGAGGGGCAGGACGCTCAAGCTGGGGATCGGCCGGGTCTCTCTCTACGTGC
260 GCGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCTGGGGATCGATCGGGTCTC-CTCT-CGTGC
** * *
18658139 TGTCGATCCTACTACCGTAACCCTTGGTCAGGTTTGATCTTAGAGTTGGAATGAACTCCGTATAC
323 TG-CGAT-CT-CTA-C-TAACCCTTGGTC-GGTCCGATCTTAGA-TTGGAATGAACTCTGTATGC
* * * *
18658204 CTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGATGGGTTGTGCA
381 CTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCA
* *
18658269 AGCCGTGGATCGATAGGGTGGTAGGTGTGTGTAGGCACATCTTCATATTTCTGCATGCCAATGCC
446 AGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
18658334 ATTTTTATGGCTTTTAAATTCATACAATGATCCCTTAAGCCTTCACATGAAGTATCATTGGCAAG
511 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGGCAAG
* *
18658399 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTATGGTTCGGGATTTTTTAAAATTTT
576 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
18658463 TT-GGAAGGACTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTAGTTTTGTTGGC-TGCACAA
641 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18658526 AAACATTTAGCTAAAAACTCGGAGCGTACAAGA-TTTGTGACCATTTTGAAAAAATGTCCCCATT
706 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAATGTCCCCATT
18658590 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
770 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTG
18658655 AGTT-TCATGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA
834 AGTTCTC--GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA
* * * *
18658707 AGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCC-GAACTCCAATGT
1 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATC-ACCAGAACCCCAATGC
* * ** ** * *** * *
18658771 CGCCTGTCAGGTTGTCCAATGATGCTCCGGTGATAGTGCTAGGGCGAAGAAAAATGCCACACCAG
64 CGCCGGTCAGGTTCTCC-GGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAG
* * * * * * * ** *
18658836 CACATTGCCTGAGCCTAGCATGTGCTGTCGGCAACCCTCGCTCTGGTTCGATAATAGACTGGAAA
128 CACA-TGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
* * * *
18658901 TGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATAAAACGAGCAT
191 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
** * * * *
18658966 ATGGGTGCTCAGCCGGCCACAGGGGCGGGATGTGCAAGCTGGGGATC
256 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCTGGGGATC
18659013 AACCCCCGAA
Statistics
Matches: 1786, Mismatches: 249, Indels: 86
0.84 0.12 0.04
Matches are distributed among these distances:
880 203 0.11
881 501 0.28
882 2 0.00
883 3 0.00
884 1 0.00
885 4 0.00
886 1 0.00
887 4 0.00
888 1 0.00
889 57 0.03
890 78 0.04
891 65 0.04
892 122 0.07
893 289 0.16
894 58 0.03
895 146 0.08
896 237 0.13
897 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (884 bp):
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCAGAACCCCAATGCCG
CCGGTCAGGTTCTCCGGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCTGGGGATCGATCGGGTCTCCTCTCGTGCTGC
GATCTCTACTAACCCTTGGTCGGTCCGATCTTAGATTGGAATGAACTCTGTATGCCTAAGCCAAC
CGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA
Found at i:18660097 original size:26 final size:25
Alignment explanation
Indices: 18660046--18660097 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
18660036 CTTGTTCGAT
* *
18660046 CTTAGACTGGAATAAACTTCGTATG
1 CTTAGACTGGAATAAACTCCGCATG
*
18660071 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACT-GGAATAAACTCCGCATG
18660097 C
1 C
18660098 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGCATG
Found at i:18660955 original size:26 final size:26
Alignment explanation
Indices: 18660926--18660978 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18660916 CCAATCCGAT
*
18660926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
18660952 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
18660978 C
1 C
18660979 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:18661451 original size:887 final size:886
Alignment explanation
Indices: 18659030--18662631 Score: 4697
Period size: 887 Copynumber: 4.0 Consensus size: 886
18659020 GAATCACCGA
* * * ** * * *
18659030 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGCACCCTGACAAAGAAAAATGCGACACCAG
1 AACCCCAATGTCGCCGGTCAGGTTGTCCGATGATGGTGCCCCGACAAAGAAAAATGGGTCACCAG
* * * *
18659095 CACATGC-CAGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGATTGGGAAT
66 CACATGCTC-GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT-GGAAT
* * *
18659159 GAACTCCGTATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
129 GAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** * * *
18659224 CGGGCCCTCAACCGGCCAGATGGGCGGGATGCTTAAGTCGGGGATCGACCAGGTCCCCCTTTGCG
194 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGATCAGGTCCCCCTCTGCG
* * * * * * * *
18659289 TGCTGTCGATCCTGTTGCAGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTA
259 TGCTGCCAATCCTGCTGCA-CAACCTTCGGTCCGATCCAATCTTAGACGGGGAATGAACTCCGTA
* * * ** *
18659354 TGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGGCGGGCGGGCACTACGCTC-ACCAGAGA
323 TGCCTAAGCCAACCGACGAAACGA----GCAGAC-GGGCGGGCGGGCACTA-AATCGGCCAGAGA
*
18659418 GACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
382 GACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
18659483 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-A--CTTCACGTGAAG
447 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * * *
18659545 TTTCATTTCAAGACGACTCCTTTTCTATTTTTTATGAATTTTGAAACTTTTTACGGTTC-GCAAT
512 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GAT
* * * *
18659609 TTTTTAAAATTTTTCA-AAGGAGCTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGT
576 TTTTTAAAATTTTTTAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18659673 TGGCATGCACAAAAAAATTCAGGTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAA
641 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
18659738 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTT
706 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18659803 TAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
771 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
18659868 CACACATCGCACATCATGTGCGCACACACCCCCCCGGCACCCCCGATCGCCGG
836 CACCCATCGCACACCACGTGCGGACACA-CCCCCCGGC-CCCCCGATCGTCGG
* * * **
18659921 AACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGATGAAGAAAAA
1 AACCCCAAT---GTCG--CCGG---T-C-AGGTTG-TCCGATGATGGTGCCCCGACAAAGAAAAA
* * * * * *
18659986 TTCGG-CACCAGCACATGCCCGAG-CCAGCATGTGCTGTCGTAACCCTCGATCTTG-TTCGATCT
55 -TGGGTCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC-CGATCCGATCT
* * * * * *
18660048 TAGACTGGAATAAACTTCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTTAACCCATG
118 TAGACTGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
*** * * *
18660113 AAACGAGCGTGCGGAAACTCAGCC-GCCAGAGGAGCGGGATGCGCATGTCAGGGATCGGTCAGGT
183 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGATCAGGT
* ** * * * * *
18660177 CCCCCTCTACGTGCTATCGATCTTGCTGCCGCAACCTTCGGTCCGAT-CGATCTTAGACTGGGAA
248 CCCCCTCTGCGTGCTGCCAATCCTGCTG-CACAACCTTCGGTCCGATCCAATCTTAGACGGGGAA
* * ***
18660241 TGAACTCCGTATGCCTAAGCCAACCGACAAAAC--G-AG-CGGGCGGGTGGGCACTATGCCGGCC
312 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTAAATCGGCC
* * * * *
18660302 AAAGAGATGGGTTGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
377 AGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
18660367 TTTCTGCGTGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
442 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** *
18660432 TGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCA
507 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA
* * * *
18660497 GGATTTTTTCAAATTTTTTCGGAAAGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTTTATT
572 GGATTTTTTAAAATTTTTT-AGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
18660562 TTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
636 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * * * *
18660627 AAAAGAGTGTCCCTATTTCAGACACTATAGTGGTTACTGGCAGCAAACCTATAAAATCTCAAATG
701 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
18660692 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
766 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
18660757 ACCAGCACCCATCGTACACCACGTGTGGA-A-ACCCCCCGGCCCCCCTATCGTCGG
831 ACCAGCACCCATCGCACACCACGTGCGGACACACCCCCCGGCCCCCCGATCGTCGG
* **
18660811 AACCCCAATGTCGCCGGTCAGGTTGTCCGACGATGGTGCCCCGGTAAAGAAAAATGGGTCACCAG
1 AACCCCAATGTCGCCGGTCAGGTTGTCCGATGATGGTGCCCCGACAAAGAAAAATGGGTCACCAG
* * *
18660876 TACATGCTCGAGCCCAGCATGTGCGGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATG
66 CACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT-GGAATG
* *
18660941 AACTCCGTATGCTTAGACCGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGGGTGC
130 AACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
18661006 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CTAGGGATCGATCGGGTCCCCCTCTGCA
195 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-AGGGATCGATCAGGTCCCCCTCTGCG
** * *
18661070 TAATGCCAATCCTGCTGCCACAGCCTTTGGTCCGATCCAATCTTAGACGGGGAATGAACTCCGTA
259 TGCTGCCAATCCTGCTG-CACAACCTTCGGTCCGATCCAATCTTAGACGGGGAATGAACTCCGTA
18661135 TGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTAAATCGGCCAGAGAGACGGG
323 TGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTAAATCGGCCAGAGAGACGGG
* *
18661200 ATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGTGTTTAGAG-ACATCTTCATATTTCCGCATG
388 ATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATG
*
18661264 CCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
452 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** *
18661329 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTA
517 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-
* * *
18661394 AAAAGTTTTTTAGAAGGATTTTTGGCCCCAAAC-TGGTGGACGTGATCCTTGTATTTTTGTTGGC
581 AAAA-TTTTTTAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
18661458 ATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
645 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18661523 TCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAA-
710 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
18661586 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACC
775 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
18661650 CATCACCACACCACGTGTGGACAC-CCCCCTCGGCCCCACCCGATCGTTGG
840 CATC-GCACACCACGTGCGGACACACCCCC-CGG-CCC-CCCGATCGTCGG
* * *
18661700 AACCCCCAATGTCGTCGGTCAGGTTGTCCGATGATGGGTGCCCCGGCGAAGAAAAAT-GGTCACC
1 AA-CCCCAATGTCGCCGGTCAGGTTGTCCGATGAT-GGTGCCCCGACAAAGAAAAATGGGTCACC
*
18661764 AGCACATGCTCGAGTCCCAGCATGTGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGAA
64 AGCACATGCTCGAG-CCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGAA
* * *
18661829 TGAACTTCGTATGCTTAGACCGAGAATGAAACTCAGTATG-CTAAGTCAACCCACGAAACGAG-G
128 TGAACTCCGTATGCTTAGACCGGGAATG-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * *
18661892 TGCGGGGCGCTCAGCTTGCCAGAGGGGC-GGATGCAC-AG-CTGGGGATTCAGATCGGGTCCCCC
192 TGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-AGGGA-TC-GATCAGGTCCCCC
* * *
18661954 TCTGCGTGCTGCCAAT-CTGCTGCACAA-ATTTGGTCCAATTCCAATC-TAGACGGGG-ATGAAC
253 TCTGCGTGCTGCCAATCCTGCTGCACAACCTTCGGTCCGA-TCCAATCTTAGACGGGGAATGAAC
* * * **
18662015 TCCTTATGCCTAATG-CAACTGGCGAAAACGAGCAGACGGGCGGGCAAGCACTAAATCGGCCAGA
317 TCCGTATGCCTAA-GCCAACCGACG-AAACGAGCAGACGGGCGGGCGGGCACTAAATCGGCCAGA
* *
18662079 GAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGTGTTTACGCACATCTTCATATTT
380 GAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
18662144 CTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
445 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * ** *
18662209 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATCATTTTTGAAACTTTTTACAATTCGGGA
510 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA
* * *
18662274 TTTTTTAAACTTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTT
575 TTTTTTAAAATTTTTTAG-AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
18662339 GTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAA
639 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
18662404 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGGAGCAAACCTGTAGAATCTCAAATGCTC
704 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
18662469 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACC
769 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* ** * *
18662534 AGCACCCATCACACATTACGTGCGTACAGC-CCCCCCGACCCCCCCGATCGTCGG
834 AGCACCCATCGCACACCACGTGCGGACA-CACCCCCCG-GCCCCCCGATCGTCGG
* * *
18662588 AACCCCAATG-CTGCCGGTCAAGTTCTCCGGTGATGGTGCCCCGA
1 AACCCCAATGTC-GCCGGTCAGGTTGTCCGATGATGGTGCCCCGA
18662632 TGAAGAACCC
Statistics
Matches: 2403, Mismatches: 247, Indels: 127
0.87 0.09 0.05
Matches are distributed among these distances:
878 3 0.00
879 42 0.02
880 42 0.02
881 74 0.03
882 71 0.03
883 47 0.02
884 35 0.01
885 58 0.02
886 77 0.03
887 757 0.32
888 70 0.03
889 216 0.09
890 213 0.09
891 91 0.04
892 79 0.03
893 2 0.00
894 246 0.10
896 3 0.00
898 47 0.02
899 70 0.03
900 75 0.03
901 42 0.02
902 40 0.02
903 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
AACCCCAATGTCGCCGGTCAGGTTGTCCGATGATGGTGCCCCGACAAAGAAAAATGGGTCACCAG
CACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGAATGA
ACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGATCAGGTCCCCCTCTGCGTG
CTGCCAATCCTGCTGCACAACCTTCGGTCCGATCCAATCTTAGACGGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTAAATCGGCCAGAGAGACGGGATG
CGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
TTTTTAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACACCACGTGCGGACACACCCCCCGGCCCCCCGATCGTCGG
Found at i:18663557 original size:26 final size:26
Alignment explanation
Indices: 18663521--18663573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18663511 TTGATCTGAT
*
18663521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18663547 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18663573 C
1 C
18663574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18664392 original size:26 final size:26
Alignment explanation
Indices: 18664363--18664413 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18664353 GGTTCGATCA
*
18664363 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
18664389 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
18664414 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18666036 original size:26 final size:26
Alignment explanation
Indices: 18666007--18666056 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18665997 CCAATCCGAT
*
18666007 CTTAGATTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
18666033 CTTAGACTGGGAATGAGCTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18666057 TGTCTAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18666936 original size:26 final size:26
Alignment explanation
Indices: 18666907--18666959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18666897 CTGGTCCGAT
18666907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18666933 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18666959 C
1 C
18666960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18667454 original size:903 final size:887
Alignment explanation
Indices: 18664946--18667690 Score: 3797
Period size: 889 Copynumber: 3.1 Consensus size: 887
18664936 CATTTGAAAA
* * *
18664946 AAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCCCTAGCCCCCCCGATCGCCAGAAGC
1 AAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGGAACC
* * * * * * * *
18665011 CCAACGCCG-CCAGTCAGGTTCTCC---GACGATGCTCTGACGAAGAAAAATACGGCACCAGCAC
64 CCAATGCCGTCGA-TCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCAC
* *
18665072 ATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
128 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
* * * *
18665137 TCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGG
193 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
18665202 CGCTCAGCAGGCCAGAGGGGCGGGATGC-CAAGTCGGGGGTCGGTCGGGTCCCCCTTTGCATGTT
258 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * * ** *
18665266 GCCGATCCTGCTATCACAACCCTTAGTCCGGTCCAATCTTAAACTGGGAATGAACT-TCGTATGC
323 GTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAAATTGGGAATGAACTCT-GTATGC
* * * * * *
18665330 CTAAGCCAACCAACGGAATGAGCGGGCAGGCAGGCAGGCACTACGTCGGGCAGAGAGACAGGG-T
387 CTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC-GGGAT
* *
18665394 ACGCAAGCCATGGATCGATAGGGT-GTTAGGTTGGTTTAGGTACATCTTCATATTTTTACGTGCC
451 ACGCAAGCCATGGATCGATAGGGTGGTT-GGTGGGTTTAGGTACATCTTCATA-TTTTGCGTGCC
*
18665458 AATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
514 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * **
18665523 GCAAGACGACT-GATTTTCTATTTTTAATGATTTTTTAAACTTTTTACGGTTTGAGATTTTTTAA
579 GCAAGACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAA
* * *
18665587 AATTTTTTCGGAAGGTTTTTTGGCCCCAAACTTTGTAGACCTTATCCTTGTATTTTTGTTGGCAT
643 AATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * * *
18665652 ACACAAAAAAATTCAGCTAAAAACTTGAAGTGTGCGAGATTTTGTAACCATTTGAAAAAAGTGTA
708 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTA
* * * *
18665717 AACATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGG
773 CACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18665782 GGTGTGAGTTCTCGAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
838 GGTGTGAGTTCTCAAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
* * * *
18665832 AAGTTCCAGCACCCATCACACATCATGTACGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCC
1 AAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* * *
18665897 CAATGCTGTCGGTCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACAT
65 CAATGCCGTCGATCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACAT
* * *
18665962 GCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTC
130 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * * ** *
18666027 CGTAAGCTTAGACTGGGAATGAGCTCCGTATGTCTAAGTGTACCCATGAAACGAGCGTGCGGGCG
195 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
18666092 CTCAACCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGT
260 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGT
* * *
18666157 CGATCCTACTACCGCAACTCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTA
325 CGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAAATTGGGAATGAACTCTGTATGCCTA
* ** * *
18666222 AGCCAACCGACGAAACGAATGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACAGGATACGC
390 AGCCAACCAACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATACGC
* * * * ** * *
18666287 AAGCCTTGGATTGATAGGGTGGTAGGTGCGTTTAGGTACATCCACATATCTTTGCATGCAAATGC
455 AAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATAT-TTTGCGTGCCAATGC
*
18666352 CATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
519 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
18666417 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACCATTCAAGATTTTTTTAAATTTT
584 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTT
* * * *
18666482 TTCGGAAGGCGTTTTGGCCCCAAACTTGGTTGACGTGATCCTGGTATTTTTGTTGGCATGCACAA
649 TTCGGAAGGTGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18666547 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACACATT
714 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACACATT
* *
18666612 TCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
779 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18666677 AGTTCTCAAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
844 AGTTCTCAAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
** *
18666721 AAGTACCAGCACCCATCGTACATCATGTGCGCACACCTCCCCGGCCCCCCCGATCACCGGAACCC
1 AAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGCCGGAACCC
*
18666786 CAATGCCGTCGATTAGGTTCTCTGGCGATGCTCTGGCGATGGTGCCCCGAAT-AAGAAAAATGCG
65 CAATGCCGTCGATCAGGTTCTC---CG--G---T---GATGGTGCCCCG-ATGAAGAAAAATGCG
* * * * * *
18666850 GCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGTAACCCTTGGTCTGGTCCGATCTTAGACT
118 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACT
*
18666915 GGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
183 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * **
18666980 AGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGG-TGCGTAAGCCGGGGATC-AACTGGGTCCCC
248 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCC
* * * * * * *
18667043 CTCTACGTGCTGTTGATCTTGCTGCCGCAACCCTCGGTCTGGTGTGATCTTATATTGGGAATGAA
312 CTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAAATTGGGAATGAA
* *
18667108 CTCTGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGGCGGGCGGTCACTACGCCGGCC
377 CTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGC---AGG-CACTACGCCGGCC
* * *
18667173 AGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATA
438 AGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATA
* * *
18667238 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACA
503 TTT-TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
18667303 TGAAGTTTCATGGCAAGACGAATCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
567 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA
*
18667368 AGATTTTTTAAAATATTTTCGGAAGGTGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATT
632 AGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATT
* *
18667433 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGCGTACAAGATTTTGTGACCATTTG
697 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
18667498 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
762 AAAAAAGTGTACACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
18667563 TTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCC
827 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
* * *
18667623 AAGTACCAGCACCCATCACACATGATGTGCGCACACCCCCCGGCCCCTCCGATCGCTGGAACCCC
1 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
18667688 AAT
66 AAT
18667691 CCTACCTGTA
Statistics
Matches: 1634, Mismatches: 196, Indels: 43
0.87 0.10 0.02
Matches are distributed among these distances:
885 35 0.02
886 40 0.02
888 175 0.11
889 600 0.37
890 3 0.00
892 2 0.00
894 1 0.00
897 1 0.00
898 1 0.00
899 119 0.07
900 167 0.10
901 30 0.02
902 51 0.03
903 409 0.25
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
AATGCCGTCGATCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC
GATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAAATTGGGAATGAACTCTGTATGCCTAA
GCCAACCAACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATACGCA
AGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
CGGAAGGTGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACACATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCAAGGTTTGATTAGGAATAGGGGGCCAATATAAGGGCC
Found at i:18667853 original size:21 final size:20
Alignment explanation
Indices: 18667829--18667952 Score: 69
Period size: 21 Copynumber: 5.8 Consensus size: 20
18667819 TGTATTTTAT
18667829 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATAT-TA
18667850 TATTT-TTACTTATT-TATT-
1 TATTTATTA-TTATTATATTA
* *
18667868 TATTTATTTTTTGTTAATATTTA
1 TATTTA-TTATTATT-ATA-TTA
*
18667891 TATGTATT-TTATTTATATAGTTCTA
1 TATTTATTATTA--T-TATA--T-TA
18667916 TATTTATTATATATTATAATT-
1 TATTTATTAT-TATTAT-ATTA
18667937 TATTTATTATTATTAT
1 TATTTATTATTATTAT
18667953 TTTTCTTGTA
Statistics
Matches: 83, Mismatches: 5, Indels: 31
0.70 0.04 0.26
Matches are distributed among these distances:
18 5 0.06
19 5 0.06
20 14 0.17
21 24 0.29
22 5 0.06
23 10 0.12
24 6 0.07
25 11 0.13
26 1 0.01
27 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (20 bp):
TATTTATTATTATTATATTA
Found at i:18667937 original size:17 final size:17
Alignment explanation
Indices: 18667898--18667954 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
18667888 TTATATGTAT
*
18667898 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATA-A
18667918 TTTATTATATATTATAA
1 TTTATTATATATTATAA
*
18667935 TTTATT-TATTATTATTA
1 TTTATTATA-TATTATAA
18667952 TTT
1 TTT
18667955 TTCTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTATTATATATTATAA
Found at i:18668966 original size:4 final size:4
Alignment explanation
Indices: 18668909--18668950 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
18668899 TTTTTTTTGA
* * *
18668909 ATTT -TTT ATTT ATTT ATTT GTTT ATTT GTTT TTTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
18668951 AGATTAGGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (4 bp):
ATTT
Found at i:18669005 original size:17 final size:17
Alignment explanation
Indices: 18668985--18669032 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
18668975 TTTATCTTAA
18668985 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
18669001 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
18669019 TTTCTATTTTTATT
1 TTT-TATTTTTATT
18669033 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:18669032 original size:14 final size:14
Alignment explanation
Indices: 18668985--18669042 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
18668975 TTTATCTTAA
18668985 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
18668997 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
18669011 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
18669026 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
18669040 TTT
1 TTT
18669043 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:18669047 original size:17 final size:17
Alignment explanation
Indices: 18669008--18669047 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
18668998 TTTGTTTTAC
*
18669008 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
18669025 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
18669039 TTTTCTTTA
1 TTTTCTTTA
18669048 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:18669199 original size:118 final size:119
Alignment explanation
Indices: 18669053--18669285 Score: 382
Period size: 118 Copynumber: 2.0 Consensus size: 119
18669043 CTTTAAATAA
18669053 AAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAATCAAAATTTCCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* *
18669117 TAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
65 TAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
*
18669172 AAATCAAAGTTT-CAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATCAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
18669236 AAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
66 AAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
18669286 CTACACAAGA
Statistics
Matches: 107, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
118 83 0.78
119 24 0.22
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (119 bp):
AAATCAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
AAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:18669219 original size:60 final size:58
Alignment explanation
Indices: 18669050--18669285 Score: 325
Period size: 58 Copynumber: 4.0 Consensus size: 58
18669040 TTTCTTTAAA
18669050 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-CAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
***
18669111 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAA-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
**
18669169 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAA-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
18669229 TAAAAATAAATTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18669286 CTACACAAGA
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
58 82 0.52
59 21 0.13
60 48 0.30
61 7 0.04
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
TAAAAATAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18673159 original size:15 final size:16
Alignment explanation
Indices: 18673141--18673174 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
18673131 GATGATGAAA
18673141 AAAGGAAAAAAAA-AG
1 AAAGGAAAAAAAAGAG
18673156 AAA-GAAAAAAAAGAG
1 AAAGGAAAAAAAAGAG
18673171 AAAG
1 AAAG
18673175 AAATGAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAGGAAAAAAAAGAG
Found at i:18673162 original size:14 final size:15
Alignment explanation
Indices: 18673145--18673177 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
18673135 ATGAAAAAAG
18673145 GAAAAAAAA-AGAAA
1 GAAAAAAAAGAGAAA
18673159 GAAAAAAAAGAGAAA
1 GAAAAAAAAGAGAAA
18673174 GAAA
1 GAAA
18673178 TGAGAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAGAGAAA
Found at i:18673172 original size:11 final size:11
Alignment explanation
Indices: 18673118--18673185 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
18673108 GAAAAATGAG
18673118 AAAAGAGAAAA
1 AAAAGAGAAAA
*
18673129 AAGATGATG-AAA
1 AA-AAGA-GAAAA
*
18673141 AAAGGA-AAAA
1 AAAAGAGAAAA
18673151 AAAAGAAAGAAAA
1 AAAAG--AGAAAA
*
18673164 AAAAGAGAAAG
1 AAAAGAGAAAA
*
18673175 AAATGAGAAAA
1 AAAAGAGAAAA
18673186 TGAAAAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
10 7 0.16
11 19 0.42
12 9 0.20
13 10 0.22
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (11 bp):
AAAAGAGAAAA
Found at i:18674518 original size:41 final size:41
Alignment explanation
Indices: 18674442--18674735 Score: 434
Period size: 41 Copynumber: 7.1 Consensus size: 41
18674432 ATGATTGTCA
*
18674442 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
18674484 AGGAGCAATTTATTTTCCAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
18674525 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
*
18674567 AGGAGCAATTTATTTTTCAAAGTCGTGGTTGCCTCTG-TTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGG-TGCCTCTGTTTAG
*
18674608 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTG-TTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
18674648 AGGAGCAATTTGTTTT-C-AAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
18674687 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
18674730 AGGAGC
1 AGGAGC
18674736 TTTGGTGAAA
Statistics
Matches: 233, Mismatches: 12, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
38 17 0.07
39 16 0.07
40 30 0.13
41 81 0.35
42 64 0.27
43 25 0.11
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:18674581 original size:83 final size:82
Alignment explanation
Indices: 18674442--18674735 Score: 445
Period size: 83 Copynumber: 3.6 Consensus size: 82
18674432 ATGATTGTCA
18674442 AGGAGCAATTTACTTTC-CAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG
1 AGGAGCAATTTACTTTCTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTT-CAAAG
*
18674506 TCGTAGTGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
18674525 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAGT
18674590 CGTGGTTGCCTCTG-TTAG
65 CGTGG-TGCCTCTGTTTAG
* *
18674608 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTG-TTAGAGGAGCAATTTGTTTTC-AAGTC
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAGTC
*
18674670 GTGGTGCCTCTGTTTAA
66 GTGGTGCCTCTGTTTAG
* * *
18674687 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 AGGAGCAATTTA-CTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
18674736 TTTGGTGAAA
Statistics
Matches: 197, Mismatches: 7, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
78 8 0.04
79 24 0.12
80 5 0.03
81 36 0.18
82 33 0.17
83 78 0.40
84 13 0.07
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:18674749 original size:1 final size:1
Alignment explanation
Indices: 18674743--18674797 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
18674733 AGCTTTGGTG
* * * * * *
18674743 AAAAAAAAAAACAAAAAAAACAAAAAACAAAAAAAAGACAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18674798 TGACAATGTT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:18674760 original size:9 final size:9
Alignment explanation
Indices: 18674746--18674797 Score: 70
Period size: 9 Copynumber: 5.7 Consensus size: 9
18674736 TTTGGTGAAA
18674746 AAAAAAAAC
1 AAAAAAAAC
18674755 AAAAAAAAC
1 AAAAAAAAC
18674764 AAAAAACAA-
1 AAAAAA-AAC
*
18674773 AAAAAAGAC
1 AAAAAAAAC
18674782 AAAAAAAAAC
1 -AAAAAAAAC
18674792 AAAAAA
1 AAAAAA
18674798 TGACAATGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 1 0.03
9 27 0.71
10 10 0.26
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:18674786 original size:28 final size:27
Alignment explanation
Indices: 18674744--18674797 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
18674734 GCTTTGGTGA
18674744 AAAAAAAAAACAAAAAAAACAAAAAAC
1 AAAAAAAAAACAAAAAAAACAAAAAAC
*
18674771 AAAAAAAAGACAAAAAAAAACAAAAAA
1 AAAAAAAAAAC-AAAAAAAACAAAAAA
18674798 TGACAATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAACAAAAAAAACAAAAAAC
Found at i:18674803 original size:10 final size:10
Alignment explanation
Indices: 18674745--18674803 Score: 61
Period size: 10 Copynumber: 6.2 Consensus size: 10
18674735 CTTTGGTGAA
*
18674745 AAAAAAAAAC
1 AAAAAAAGAC
18674755 AAAAAAA-AC
1 AAAAAAAGAC
*
18674764 -AAAAAACA-
1 AAAAAAAGAC
18674772 AAAAAAAGAC
1 AAAAAAAGAC
*
18674782 AAAAAAAAAC
1 AAAAAAAGAC
*
18674792 AAAAAATGAC
1 AAAAAAAGAC
18674802 AA
1 AA
18674804 TGTTGAGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
8 6 0.14
9 10 0.24
10 26 0.62
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAC
Found at i:18675024 original size:10 final size:10
Alignment explanation
Indices: 18675009--18675150 Score: 71
Period size: 10 Copynumber: 13.9 Consensus size: 10
18674999 TTTATGTATT
18675009 TTATTATTTA
1 TTATTATTTA
18675019 TTATTATTATA
1 TTATTATT-TA
18675030 TGTA-TATTT-
1 T-TATTATTTA
18675039 TTACTTATTTA
1 TTA-TTATTTA
* *
18675050 TTTATTTTTTT
1 -TTATTATTTA
* *
18675061 TTGTTA-ATA
1 TTATTATTTA
*
18675070 TT-TATATGTA
1 TTAT-TATTTA
18675080 TT-TTATTTA
1 TTATTATTTA
* *
18675089 TATAGTTCTATA
1 T-TA-TTATTTA
*
18675101 TTTATTATATA
1 -TTATTATTTA
*
18675112 TTATAATTTA
1 TTATTATTTA
18675122 TTTATTA-TTA
1 -TTATTATTTA
*
18675132 TTATTATTTT
1 TTATTATTTA
18675142 TTATTATTT
1 TTATTATTT
18675151 TTCTTGTAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
8 3 0.03
9 18 0.17
10 46 0.45
11 23 0.22
12 12 0.12
13 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (10 bp):
TTATTATTTA
Found at i:18675037 original size:21 final size:20
Alignment explanation
Indices: 18675013--18675149 Score: 72
Period size: 21 Copynumber: 6.5 Consensus size: 20
18675003 TGTATTTTAT
18675013 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATAT-TA
18675034 TATTT-TTACTTATT-TATT-
1 TATTTATTA-TTATTATATTA
* * *
18675052 TATTTTTTTTTGTTAATATTTA
1 TATTTATTATTATT-ATA-TTA
*
18675074 TATGTATT-TTATTTATATAGTTCTA
1 TATTTATTATTA--T-TATA--T-TA
18675099 TATTTATTATATATTATAATT-
1 TATTTATTAT-TATTAT-ATTA
18675120 TATTTATTATTATTATTATT-
1 TATTTATTATTATTA-TATTA
18675140 T-TTTATTATT
1 TATTTATTATT
18675150 TTTCTTGTAA
Statistics
Matches: 95, Mismatches: 6, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
18 9 0.09
19 12 0.13
20 17 0.18
21 25 0.26
22 7 0.07
23 5 0.05
24 6 0.06
25 11 0.12
26 1 0.01
27 2 0.02
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (20 bp):
TATTTATTATTATTATATTA
Found at i:18675120 original size:17 final size:18
Alignment explanation
Indices: 18675081--18675136 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 18
18675071 TTATATGTAT
*
18675081 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATATA
18675101 TTTATTATATATTATA-A
1 TTTATTATATATTATATA
18675118 TTTATT-TATTATTAT-TA
1 TTTATTATA-TATTATATA
18675135 TT
1 TT
18675137 ATTTTTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 2 0.06
17 16 0.48
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATTATATATTATATA
Found at i:18675787 original size:20 final size:20
Alignment explanation
Indices: 18675751--18675788 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18675741 TCCGGTGAAG
*
18675751 AAACCCAAATTCTAGTGACA
1 AAACCCAAATTCCAGTGACA
18675771 AAACCCAGAA-TCCAGTGA
1 AAACCCA-AATTCCAGTGA
18675789 ATCTTCAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.45, C:0.26, G:0.13, T:0.16
Consensus pattern (20 bp):
AAACCCAAATTCCAGTGACA
Found at i:18676258 original size:14 final size:14
Alignment explanation
Indices: 18676211--18676268 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
18676201 TTTATCTTAA
18676211 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
18676223 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
18676237 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
18676252 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
18676266 TTT
1 TTT
18676269 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:18676273 original size:17 final size:17
Alignment explanation
Indices: 18676234--18676273 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
18676224 TTTGTTTTAC
*
18676234 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
18676251 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
18676265 TTTTCTTTA
1 TTTTCTTTA
18676274 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:18676372 original size:58 final size:59
Alignment explanation
Indices: 18676276--18676571 Score: 393
Period size: 59 Copynumber: 5.0 Consensus size: 59
18676266 TTTCTTTAAA
* *
18676276 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
**
18676337 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
18676395 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
18676455 TAAAGGATAAATTTTTAAAAAAA-TATTTTTTG-GGAAAAGTTAAAAGTATCAATTTTCCT
1 TAAA-AATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
18676514 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18676572 CTGCACAAGA
Statistics
Matches: 207, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
58 65 0.31
59 73 0.35
60 60 0.29
61 9 0.04
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18676452 original size:28 final size:28
Alignment explanation
Indices: 18676361--18676452 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
18676351 CAAAAAAGGG
18676361 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
18676389 TTTCCTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
18676420 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
18676449 TTTT
1 TTTT
18676453 CTTAAAGGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:18677179 original size:26 final size:26
Alignment explanation
Indices: 18677143--18677195 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18677133 CTCGGTCCGA
18677143 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18677169 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18677195 C
1 C
18677196 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18678936 original size:26 final size:26
Alignment explanation
Indices: 18678900--18678952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18678890 CCGATCTGAT
*
18678900 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18678926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18678952 C
1 C
18678953 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18679824 original size:26 final size:26
Alignment explanation
Indices: 18679795--18679847 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18679785 CTGATCCGAT
18679795 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18679821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18679847 C
1 C
18679848 CTAAGTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18680610 original size:12 final size:12
Alignment explanation
Indices: 18680593--18680642 Score: 82
Period size: 12 Copynumber: 4.2 Consensus size: 12
18680583 GGGGGATAGG
18680593 GGGCCAATATAA
1 GGGCCAATATAA
**
18680605 GGGCCAATATGG
1 GGGCCAATATAA
18680617 GGGCCAATATAA
1 GGGCCAATATAA
18680629 GGGCCAATATAA
1 GGGCCAATATAA
18680641 GG
1 GG
18680643 AAGAAAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:18680619 original size:24 final size:24
Alignment explanation
Indices: 18680591--18680638 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
18680581 TAGGGGGATA
18680591 GGGGGCCAATATAAGGGCCAATAT
1 GGGGGCCAATATAAGGGCCAATAT
18680615 GGGGGCCAATATAAGGGCCAATAT
1 GGGGGCCAATATAAGGGCCAATAT
18680639 AAGGAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (24 bp):
GGGGGCCAATATAAGGGCCAATAT
Found at i:18680914 original size:26 final size:26
Alignment explanation
Indices: 18680885--18680937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18680875 CCAGTCTGAT
*
18680885 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18680911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18680937 C
1 C
18680938 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18682690 original size:26 final size:26
Alignment explanation
Indices: 18682661--18682713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18682651 CCGGTCCGAT
18682661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18682687 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18682713 C
1 C
18682714 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18684089 original size:901 final size:896
Alignment explanation
Indices: 18680655--18685195 Score: 5589
Period size: 901 Copynumber: 5.1 Consensus size: 896
18680645 GAAAAATGTT
* * **
18680655 AGTTCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATTGCAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* ** * * *
18680720 ATCATGCGCGCACACCCCTTCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCC
66 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
18680785 CCGGCGATGCTCTGGCGATGGTG-CCTCAATGAAGAAAAATGCAGCACCAGCACATGCCCAAGCC
131 CC-GCGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * **
18680849 CAACATGTGCT-ACTGTAACCCTCGATCC-AGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
194 CAGCATGTGCTGTC-GCAACCCTCGATCCGA-TCCGAT-TTAGACTGGGAATGAACTCCATATGC
18680912 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
256 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * *
18680977 AGCCAGAGGAGTGGGATGCACAAACCGGGGATC-GACAGGGTCCCCCTCTGCATGTTACCGATCC
321 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18681041 TGCTGTCGCGACGCCT-GGTTCGGTCTAATCTTAGACTGGGAATGAACTTCGCATGCCTAAGCCA
385 TGCTGCCGCAAC-CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18681105 ACCGACGAAACGA-ACAGGCGGGTGGGCGGGCGAGCGCTACGTCGGCCAGAGAGACGGGATGCGC
449 ACCGACGAAACGAGA-GGGCGGG-GGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGC
* *
18681169 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTTCTACGAGCCAATG
511 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTACGTGCCAATG
** * *
18681234 CCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATAGCAA
575 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18681299 GACGACTCG-TTT-T-TTTTTCATGATTTTTG---TTTTTGTTGTTCGAGATTTTTTAAAATTTT
640 GACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTATGGTTCGGGATTTTTT-AAATTTT
* * * ** * * *
18681358 CTCGAAAGGAGTTTTGGCCCCAGTCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATACAAAA
703 TTCGGAAGGA-ATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18681423 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
767 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * * * *
18681488 TTAGACACTTTAAAGGCTACTGGTAGCAAACCTATAAAATATGAAAAGCTCTTTAAGGAGGTGTG
832 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18681553 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * ** *
18681618 ATCATGTTCGCACACCCCCCCGGCCCCTCCGATTGTCAGAACTTCAATGCCGCCAGTCAGGTTCT
66 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * * ** * * *
18681683 CCTGCGTTGCTCCGACGGTGGTGCCCCGGTGAAGAAAAATGTAGCACCAGTACATGCTCGAGCCT
131 CC-GCGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
18681748 AGCATGTGCTGTCGCCACCCTCG----G-TCCGA--T---C--CG-AT-AACTCCATGTGCTTAG
195 AGCATGTGCTGTCGCAACCCTCGATCCGATCCGATTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
18681799 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGCC
260 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
18681864 AGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTCCTGCTGATCCTGCTA
325 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * *
18681929 CCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
390 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * **
18681994 AAAACGAGCGGGTGGGCGGGCGAGCGGGCTTTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
455 GAAACGAGAGGGCGGG-GGGCGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18682059 CGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTT
518 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
18682124 ATGGCTTGTAAATTAAAACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
583 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18682188 GTTTTCTCTTTTCCACGACTTTTGAAACTTTT-TGCGGTTCAGGATTTTTTTAAATTTTTTCGGA
648 GTTTTCTATTTTTCATGA-TTTTGAAACTTTTAT--GGTTCGGGA-TTTTTTAAATTTTTTCGGA
* * ** *
18682252 AGGAGTTTTGGCCCCAAATTTGGTAGAAATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
709 AGGA-ATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
18682317 TCAGCTAAAAACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
773 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18682382 ACTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGC-CTTTTAAGGGGGTGTG
838 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
*
18682441 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * * *
18682506 ATCATGTGCGCACACCTCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGG---
66 ATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTC
*
18682568 T------T-CTCCGACGATGGTG-CCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCC
130 TCCGCGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
18682625 TAGCATGTGCTG-CGGCAACCC-CTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
194 CAGCATGTGCTGTC-GCAACCCTC-GATCCGATCCGAT-TTAGACTGGGAATGAACTCCATATGC
* * *
18682688 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCC
256 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * * * * *
18682753 GGCCAGAGGGGCGGGATGCATAAGCTGGGGATCGGTCGGGTCCCTCTTTGCATGCTGTCAATCCT
321 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
18682818 GCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
386 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18682883 CGATGAAATGAGCA-AGC---GTGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAG
451 CGACGAAACGAG-AGGGCGGGGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAG
* * *
18682944 TCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCAT
514 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * * * * *
18683009 TTTTTTGGCCTGTAAATTCATACAATGGTCCCTTTAGCCTGCACGTGAAGTTTTATGGCAAGTCA
579 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18683074 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
644 ACTCGTTTTCTATTTTTCATGA-TTTTGAAAC-TTTTATGGTTCGGGATTTTTT-AAATTTTTTC
18683139 GGAAGGAATTTTGGCCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
706 GGAAGGAA-TTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18683204 CAATTCAGCTAAAAAGTCAAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
769 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18683269 AGACACTTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
834 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18683332 AGTTCTTGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
18683396 ATCATGTGCGCACATCCCCCCCGGCCCCCCCGATCGTC-GAACCCCAATGCCGCCGGTCAGGTTC
66 ATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTC
* * *
18683460 TCCGACGATGCTCTGACGATGGTGCCCTGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
130 TCCG-CGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
18683525 CAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATTTTAGACTGGGAATGAACTCCACATGCTT
194 CAGCATGTGCTGTCGCAACCCTCGATCCGATCCGA-TTTAGACTGGGAATGAACTCCATATGCTT
* * *
18683590 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAAACGAGCGTACAGGCGCTCAGCCG
258 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
18683655 GCTAGAGGGGCGGGATGCGGAAGCCAGGGATCGGTCGGGTTCCCCTCTGTGTGCTGCCGATCCTG
322 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * *
18683720 CTGCCCCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACT
387 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18683785 GACGAAACGAGAGGGCGGGGGGCGGGGGGGCATTACGCAGGCCAGAGAGACGGGACGTGCAAGCC
452 GACGAAACGAGAGGGCGGGGGGCGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCC
* * * * * ** *
18683850 GTGGATCGATAGGTTGGTAGGTGGCTTTAGGGATATCTTCACATTTCTGTGTGCCAATGCTATTT
516 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
18683915 TTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
581 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18683980 TCGTTTTTTATTTTTCATGATTTTCAAAACTTTTATGGTTCGGGATTTTTCTAAATTTTTTCAGA
646 TCGTTTTCTATTTTTCATGATTTT-GAAACTTTTATGGTTCGGGATTTTT-TAAATTTTTTCGGA
* * *
18684045 AGGAATTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCTTGCATAAAAAAATT
709 AGGAATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* ** *
18684110 CATCTTCAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
774 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18684175 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTG
839 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18684233 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * * * * *
18684298 ATCATGTGCGCATACCCCCTCCGGCCCCCCTGATTGTCGGAACACCAATGCTGCCGGTCATGTTC
66 ATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTC
* * ** *
18684363 TCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAGTAAGGCACCAGCACATGCTCGAGCC
130 TCC-GCGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
18684428 CAGCATGTGCTGCCGTAA-CC-C--T-CGATCCGA--T---C------TG--------AT-CTTA
194 CAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATTTAGACTGGGAATGAACTCCATATGCTTA
18684468 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
259 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
18684533 CAGAGGTG-TGGATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTG-T
324 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *** *
18684596 --TG-----CT-GGTCCGGCCTGATCTTAGACTCAAAATGAACTCCGTATGCCTAAGCCAACTGA
389 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
18684653 TGAAACGAGCGGAAGGGCAGGCGGGCGGATGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGC
454 CGAAACGA---G-AGGGC--G-GGG-GG-CGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGC
* * * *
18684718 GCAAGCCGTGAATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAAT
509 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
18684783 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGGCTTCACGTGAAGTTTCATGGCA
574 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
18684848 AGACGACTCGTTTTCTATTTTTCATGATTTGTGAAAC-TTTATCCGTTTCAGGATTTTTTAAAGT
639 AGACGACTCGTTTTCTATTTTTCATGATTT-TGAAACTTTTAT--GGTTCGGGATTTTTTAAA-T
** * * *
18684912 TTTTTCGGAA-GAAGTTTTGGCCCCAATTTTGGTAGACATGATCCCTGTATTTTTGTTGGCCTGC
700 TTTTTCGGAAGGAA--TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
18684976 ACAAAAAATTTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCC
763 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18685041 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGG
828 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18685106 TCTG
893 TGTG
* * * *
18685110 AGTTCTTGAGGTTTGATAAGGGATAGGGGGCAAATATAAGAGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
**
18685175 ATCATGTGAACACACCCCCCC
66 ATCATGTGCGCACACCCCCCC
18685196 AGCCGGCTAG
Statistics
Matches: 3182, Mismatches: 372, Indels: 200
0.85 0.10 0.05
Matches are distributed among these distances:
866 53 0.02
867 2 0.00
869 1 0.00
870 5 0.00
872 1 0.00
873 3 0.00
874 8 0.00
875 231 0.07
876 57 0.02
877 291 0.09
878 66 0.02
879 1 0.00
881 40 0.01
882 50 0.02
883 272 0.09
884 17 0.01
885 1 0.00
886 5 0.00
887 6 0.00
888 264 0.08
889 185 0.06
890 163 0.05
891 195 0.06
892 5 0.00
893 198 0.06
895 1 0.00
898 188 0.06
899 5 0.00
900 140 0.04
901 348 0.11
902 73 0.02
903 135 0.04
904 172 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCT
CCGCGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGTCGCAACCCTCGATCCGATCCGATTTAGACTGGGAATGAACTCCATATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGAGGGCGGGGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTGAAACTTTTATGGTTCGGGATTTTTTAAATTTTTTCGGAAGGAATT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
Found at i:18689392 original size:26 final size:26
Alignment explanation
Indices: 18689355--18689406 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18689345 TCTGGTCCGA
* *
18689355 TCTTAGATTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
18689381 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
18689407 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:18690292 original size:26 final size:26
Alignment explanation
Indices: 18690256--18690308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18690246 CCAGTCCGAT
*
18690256 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
18690282 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
18690308 C
1 C
18690309 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:18691196 original size:26 final size:26
Alignment explanation
Indices: 18691160--18691210 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18691150 TGGTCTGATC
18691160 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
18691186 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
18691211 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18691737 original size:898 final size:896
Alignment explanation
Indices: 18685199--18694611 Score: 10034
Period size: 898 Copynumber: 10.5 Consensus size: 896
18685189 CCCCCCCAGC
* * * *
18685199 CGGCTAGAGAGACGGAATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGACACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * *
18685264 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCCTGTAAATTCA-ACCAATCGTCCCTTAAGCC
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA-CAATGGTCCCTTAAGCC
* * *
18685328 TTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCATGATTTTTGAAACATTTTAC
130 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * * *
18685393 GGTTTGGGATTTTTTAAACTTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCT
195 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
18685458 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
18685523 CATTTGAAAAAAGTGTCCCCATTTTAGACA-TTTTATGGCTAC-GGCAGC--AGCTGT-AATTCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18685583 CAAATG-TC-TTAA-GGG-GTGA-TTCTCAA-G-TTGA-GAGGGATAGAGGGCCAATATAA-GG-
390 CAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
18685638 C-TGT-CC-GCACCCAT-GC-CAATCATGTG-GCACACCCTCCCGG---CCC-ATCGCCTGAGA-
455 CAAGTACCAGCACCCATCGCAC-ATCATGTGCGCACACCC-CCCGGCCCCCCGATCGTCGGA-AC
* * * * * * * *
18685692 CCCAATGCCGCTGGTTAGGTTTTCCGGAGATCCTCGGCCGA-GGTG-CGCGAC-AA-AAAAATGC
517 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* *** * * * * * *
18685753 AGCATGGGACACATGCCCCAGATCCA-CAATCTGCTGT---AACCCTTGGTCTGTTTTTGATCTT
582 GGCACCAG-CACATGCCCGAG-CCCAGC-ATGTGCTGTCGCAACCCTCGGTCTG-GTCTGATCTT
* *
18685814 A-AC--GGAATGAA-TTCGTATG-TTCAGACTGTGAATG-ACTCCGTAGTGCCTAAGTCAA-CCA
643 AGACTGGGAATGAACTCCGTATGCTT-AGACTGGGAATGAACTCCGTA-TGCCTAAGTCAACCCA
* * * **** * * **
18685872 C-GAAC-AACGTTGCAGGCC-CTTAG-CG-CA-A---AATTGATGCGTAA-TCCTGATGATTGAT
706 CAAAACGAGCG-TGC-GGCCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGT-C-GAGGATCAAT
* ** * * *
18685927 CGGGT-CCCCTCT--GTG-TGACCTCAATCCTGCTATCGAAACCCTCAGTCCGATCTGATCTTAG
767 CGGGTCCCCCTCTACGTGCT-A-C-CGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAG
* * * * *
18685988 ACTGGGAATAAACTCCGTATGCCTAAGCCAACT-GACAAAACCAGCAGGCGGGCGAGTGGGCGGG
829 ACTGGGAATGAACTCCGTATGCCTAAGCCAAATCGACGAAA-C-G-A-G-GGGCGGGCGGGCGGG
*
18686052 CACTACGC
889 CACTACGT
18686060 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18686125 TCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
18686190 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* *
18686255 GTTCGGGATTTTTTAAAATTCTTTT-GGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCT
196 GTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * * *
18686319 TGTTTTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAATTCGAAGTGTTCAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
18686384 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18686449 CAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18686514 CCAAATACCAGCACCCATCGCACATTATATGCGCACACCCCCCTCGGCCCCCCGATCG-CTGGAA
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCGATCGTC-GGAA
* * * * *
18686578 CCTCAATGCCACCGATCAGGTTCTCCGACGATGCTCCTG-CGATGGTGCCCCAACGAAGAAAAAT
516 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
18686642 ACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT-ACTGTAACCCTCGGTCTGGTCTGATGTTA
580 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTA
* ** * * * * * * * *
18686706 GACTAGGAATGAGGTCTGTATGCTTAGACTGGGAGTGAAGTTCGTATGCCTAAGGCAACTCGCGA
644 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
* * ** * **
18686771 AACGAGCATGGGGGTGCTCAGCCGGCC--AGGGGCGGGATGCGCAAG-CTGGGGATCGGTCGGGT
709 AACGAGCGTGCGGCCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTC-GAGGATCAATCGGGT
* ** * * * * *
18686833 CCCTCTCCGCATGCTACCGATCCTACTACCGTAACCCTCGGAT-GGGTCTAATCTTAGACTGGGA
772 CCCCCTCTACGTGCTACCGATCCTGCTGCCGTAACCCTCGG-TCCGGTCTGATCTTAGACTGGGA
* * * * * *
18686897 ATGAACTCCGTATACCTAAG-CTAATCGACGAAACGAACGGGCGGGCAGGCGGGCACTAGGC
836 ATGAACTCCGTATGCCTAAGCCAAATCGACGAAACG-AGGGGCGGGCGGGCGGGCACTACGT
18686958 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
18687023 TCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * **
18687088 TCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCCTGATTTTCAAAACTTTTTACG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* *
18687153 GTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
18687218 GTATTTTTTTTTTTGCATGCACAGAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGA
261 GTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
18687283 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
18687348 TCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGACT--GGGGCCAATATAAG
389 TCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-TAGGGGGCCAATATAAG
* **
18687411 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCACCGGAAC
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
* * ** * **
18687476 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCGGTGATGGTGACCCGGTGAAGAAAAATGC
517 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * *
18687541 GGCACCATCACATGCCTGAGCCCAGCTTGTGCTG-CTGCAA--CAC--T-T-G---G-TC-----
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGA
* *
18687590 C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCCACAAAA
646 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * * *
18687644 CGAGCGTGCGAG-TGCTCAGCCGGCCAGAGGGGCGGCATGCGCAAG-CCAGGGATCAATCGAGTC
711 CGAGCGTGCG-GCCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTCGA-GGATCAATCGGGTC
* * * * **
18687707 CCCCTCTACGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
773 CCCCTCTACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * *
18687772 GAACTCCGTATGCCTAAG-CTAACCGATGAAACGAGCGGACGGACGGGCGGGCGGGCACTACGT
838 GAACTCCGTATGCCTAAGCCAAATCGACGAAACGA--GG--GG-CGGGCGGGCGGGCACTACGT
* * *
18687835 CGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
18687900 TCATATTTCTCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCTTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
***
18687965 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTCCAAAACTTTTTAC
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTAC
* * *
18688029 GGTTCGGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
195 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
18688094 TCTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18688159 CATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
18688224 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
18688289 CCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACC
* * * *
18688354 CCAACGCCGCCGGTCAGCTTCTCCGGCGATGCTCCAACGATGGTGCCCCGACAAAGAAAAATGCG
518 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * *** *
18688419 GCACCAGCACATACCCGAGCCCAGCATGTGCTTTCACAACCCTCGGTCCAATCCGATCTTAGACT
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* * * ** *
18688484 GGGAATAAACTCTGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * * * * * *
18688549 AGCGTCCGGGCC-CTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGGGGATTAGTCGGGTCCCT
713 AGCGTGC-GGCCGCTCAGCCG-CCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCGGGTCCCC
* * * * * * *
18688613 CTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGATTGAA
776 CTCTACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * *
18688678 CTCCATATGCCTAAGCCAACT-GACGAAACGA---GCGGGCGAGCGGGCACTACGT
841 CTCCGTATGCCTAAGCCAAATCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGT
* * * **
18688730 CGGCCAGAAAGATGAGATATGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18688795 TCATATTTCTGCATGCCAATTCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
18688860 TCACGT-AAGTTTCATGGCAAGATGACTCGTTTTTTATTTCTCATGATTTTTGAAACTTTTTGCA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * * * *
18688924 GTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTCAGG-CCCAAACTTGGCAGATGTGATCCT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCT
* * *
18688988 TGTATTTTT-TTGGCATGTACAAAAAAATTCAGCAAAAAACTGGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * * *
18689052 CATTTGAAAAAACTATCCCCATTTCAGACACTTTAACGGCTACTGGTAGCAAACCTATAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
18689117 GAAATGCACTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
390 CAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ** * * *
18689182 CATGTACCAGCAGTCATCACACATCATGTGTGCACACCCCCCGGCCCCCCGATCGCCGGAACCCC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
* * * * *
18689247 AATTCGGCCAGTCAGG-T-T----C--T--T-CGACGACGGTGCCCCGACGAAGGAAAATGCGGC
520 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * *
18689301 ACCAGCACATGCCCAAGCCCAACATGTGCTGGT-GCAACCCTCGGTCTGGTCCGATCTTAGATTG
585 ACCAGCACATGCCCGAGCCCAGCATGTGCT-GTCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * * * *
18689365 GGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAACCACGAAATGA
649 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * * *
18689430 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTCCCACT
714 GCGTGCGGCCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCGGGTCCCCCT
* * * * * *
18689495 CTATGTGCTGCCGATCCTGCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAATGAACT
778 CTACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
18689560 CCGTATGCCTATGCC-AACCGATGAAACGAGTGGACGGGCGGGCGGGCACTACGT
843 CCGTATGCCTAAGCCAAATCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGT
*
18689614 CGACCA-AGGAGACGGGATGCAG-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 CGGCCAGA-GAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18689677 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGC
64 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18689742 CTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-TTATTTGAAACTTTTT
129 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT-TTTGAAACTTTTT
* *
18689806 GCGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
193 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
18689871 CTTGTATTTTTGTTGGTACGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
258 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
18689936 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAACAAACCTGTAAAAT
323 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18690001 CTCAAATGCTCTTTGAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAG
388 CTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18690066 GGCCAACTACCAGCACCCATCGCACATCATGTGTGCACACGCCCCCGGCCCCCCCGATCGTCGGA
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCCGATCGTCGGA
* * ** *
18690131 GCCCCAATGCGGCCGGTCAGGTTCTCCGGTAATGCTCCGATGATGGTGCCCCGACGAAGAAAAAT
515 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * ** *
18690196 GCGGCACCAGCACATGCCCGAGCCCAGCATATGCTG-CTGCAACGCTCGGTCCAGTCCGATCTTA
580 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTA
* * * *
18690260 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGA
644 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
* * * * * * *
18690325 AACGAGAGTGCGAG-CGCTCTGCCGGCCAAAGGGGCGGGATGCGTAAGCCGGGGATCAGTCGGGT
709 AACGAGCGTGCG-GCCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCGGGT
** * * * * **
18690389 CCCATTCTGCATGCTATCGATCCTGCTGCTGTAACCCTCGGTGTGGTCTGATCTTAGACTGGGAA
772 CCCCCTCTACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* *
18690454 TGAACTCCGTATGCCTAAGCC-AACCGACGAAACGAGCGCGTAGGCGGGCGGGCGGGCACTACGC
837 TGAACTCCGTATGCCTAAGCCAAATCGACGAAACGA--G-G--GGCGGGCGGGCGGGCACTACGT
*
18690518 CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
18690583 TCATATTTCTACGTGCCAATGTCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
18690648 TCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * * *
18690713 GTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCTCCAAACTTGTTAGACATGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
18690778 GTATTTTTGTTGGCATGCAGAAAAGAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
18690843 ATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18690908 AAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAATGGC
391 AAATGCTCTTT-AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
18690973 CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCGACCCCCCCGACCGTCGGAACCC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCC
* * * * * ** *
18691038 CGATGCCGCCGGTCTGGTTCTCCAGTGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATACGG
519 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
** *
18691103 CACCAGCACATGCCCGAGCTGAGCATGTGCTGTCGCAACCCTCGGTATGGTCTGATCTTAGACTG
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * *
18691168 GGAATGAACTCCATATGGTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGA
649 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* ** **
18691233 GCGTGCGGCCGCTCAGCCGCCAGAGGGGTGGGATGCGCAAGTCGAGGATCGGTCACGTCCCCCTC
714 GCGTGCGGCCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCGGGTCCCCCTC
* * * *
18691298 TACGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCCAGTCTCATCTTAGACTAGGAATGAACTC
779 TACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* ** *
18691363 CATATGCCTAAGATAAATCGACGAAACGAGTGGGCAGGCGGGCGGGCACTACGT
844 CGTATGCCTAAGCCAAATCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGT
* * * *
18691417 CGGCCAGAGAGACGGGATGCGCAAGCCTTTGATAGATAGGGTGGTAGGTGGGTTTAGGCATATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*** * * **
18691482 TCATATTTCTATGTGCC-ATTCCATTTTTATGGCATGTAAATTCATACTTTGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** * *
18691546 TCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAGGATTTTCAAAAATTTTTGCG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
*
18691611 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
18691676 GTATTTTTTTTGGCATGCACAAAAACATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
18691741 ATTTGAAAAAAGTGTCCCCAATTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTACAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
18691806 AAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCC
391 AAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * **
18691871 AAGTA-CAGCACCCATCTCACATCATGTGCGCACACCCCTCGGCCCCCCGATCGTCGGAAAACCA
456 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * ** * ** * * *
18691935 ATGCCGCTGGTCAAGTTCTTTGACGATAATCCGGCGATGGTGCCCTGACGAAGAAAAATACGGCA
521 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * * * **
18692000 CCAGCACATGCCTGAGCCTAGCATGTACTGTCACAA-CCTCGATCCGGTCCAATCTTAGACTGGG
586 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
*
18692064 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGC
651 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
* * * * * * * *
18692129 GTGCGGGCTCTCAGTCAGTCA-AGGGGTGGGATGCGTAAG-CTAGGGATCGATCGGGTCCCCCTC
716 GTGCGGCCGCTCAG-CCGCCAGAGGGGCGGGATGCGCAAGTCGA-GGATCAATCGGGTCCCCCTC
* ** * * * * * * *
18692192 TATGTGCTGTCGATCCTGCTGCCGTAACCCTTGATTCAGTCCGATCTTAGACTTGGAATAAACTC
779 TACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * *
18692257 CGTATGCCTAAGCC-AACCGACGAAATGAGCAGGCGCGAGGGCGGGTACTACGC
844 CGTATGCCTAAGCCAAATCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGT
*** * *
18692310 CGGCCAGAGAGACGGGATGCGCAAGCCAACCGATCGATAGGGTGGCAGGAGGGTTTAGGCACATC
1 CGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
18692375 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCC
65 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
18692440 TTCACGTGATGTTTCATGGCAAGACGGCTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
130 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * *
18692505 GGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAATTTCT-GCCCCAAACTTGGTAGACGTGAAT-
195 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTG-ATC
* * * * * * * *
18692568 ATTGTATTTTTGTTAGG-ATGTACAGAAAACTTCAGCTAAAAAGTTGAAGGGTACAAGATTTTAT
258 CTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18692632 GACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGTAGCAAACCTGTAAAA
322 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18692697 TATCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAACATAA
387 TCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * *
18692762 GGGCCAAGCACCAGCACCCATCGCACATCATTTGTGCAC-CCCCTCGACCCCCTTGATCGTCGGA
451 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGA
** * *
18692826 ACCTTAATACCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
515 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
18692891 GCGGTACTAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAG
580 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAG
* * ***** * ** ** * *
18692956 ACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACAAACG--TG-C-GGGTGAATCGCA
645 ACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATG-AAC-TCCGTATGCCTAAGTCAA-CCCA
* * * * * * ** ** * * * **
18693017 C--ATC-AG-GTTC-TCCAG-TGATG-CTCC---GGTGATGG-TGC-CCCGACAAAGAAAAAT-G
706 CAAAACGAGCGTGCGGCC-GCTCA-GCCGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCG
* ** * * * * * *
18693069 TGG-CACCAGC-ACATGCCTGAGCCCAGCAT-GTGCTGTCGCAACCCTCGGTCTGGTATGATCTT
769 -GGTCCCCCTCTACGTG-CT-A--CC-G-ATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTT
* * * * * * * * * * *
18693131 AGATTGGGAATGAACTCTGTATGCCCAAGTCAACT-TATGAAAC---GCGCGTGCGAGC--GCTC
827 AGACTGGGAATGAACTCCGTATGCCTAAGCCAAATCGACGAAACGAGGGGCGGGCGGGCGGGCAC
18693190 -A-GT
892 TACGT
* * ** * * * * * * ****** ** * *
18693193 CGGCCAGTGGGGTGAGATCCGTAAGCCGGGGATCGATCGTGTCCCCCTCTGCATGCT-GCCAACG
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGC-AC-
* * * **** * * *
18693257 CTATTGCCAGAGAGATGGGATGCACAA-GCCGTGAATCGATAGGGTGGTAGGTGGGTT-TAGCAC
62 ATCTT--CATATTTCT-GCATGC-CAATGCC----AT---T----T-TTA--TGGCTTGTA--A-
* * * * * * *
18693320 ATCTTCATATTTCTACGGTGCC--AATGCCGTTTTTCTAGCTTGTAA-ATTCAT-ACAATGGTC-
106 A--TTCATA---CAATGGTCCCTTAA-GCC----TTC-A-CGTG-AAGTTTCATGGCAA--GACG
* * ** ** ** *
18693380 CCTTAAGCCTTCACGTAAAGTTT-A--ATTTCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
156 AC-T---CGTTTTC-T-ATTTTTCATGATTT-TTGA--A-AC---TT-----TTT-ACG------
**
18693442 GAAACTTTTTACGATTCGAGATTTTTTAAAA-TTTTTCGGAAGGACCTTTGGCCCCAAACTTGGT
196 G-------TT-CG----G-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
18693506 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
248 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * *
18693571 AGATTTCGTAACCATTTCAAAAAAGTGTCCCCCTTTCAGACACTTTGATGGCTACTGGCAGCAAA
313 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
18693636 CCTGTAAAATCTCAAATGCTCCTAAAGGGGGTGTTAGTTCCCGAGGTTTGATGAGGGATAGGGGG
378 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
18693701 CCAATATAAGGGCCAAGTACCAGCACACTTCGCACATCATGTGCGCACATCCCCCGGCCCCCCGA
442 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
** * * ** *
18693766 TCGTCGGAACCCCAATGCCGTTGGTCAAGTTCTCTGGCGATGCTCCGGTGATGGTG-CCCTAGCG
507 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CG
* * * * *
18693830 AAGAAAAGTGCGGCACCACCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT-
571 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTC
*
18693894 TCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
636 T-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * *
18693959 AACCCACAGAACGAGCATGCGGGCGCTCAGTCGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCG
700 AACCCACAAAACGAGCGTGCGGCCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCA
* * ** **
18694024 GTCGGGTCCCCCT-TCACGTGCTATCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAG
765 ATCGGGTCCCCCTCT-ACGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAG
* * * * *
18694088 ACTGGGAATGAACTCCATATGCCTAAGCCAACT-GACAAAACGA---CCGGGTGGGCGGGCACTA
829 ACTGGGAATGAACTCCGTATGCCTAAGCCAAATCGACGAAACGAGGGGCGGGCGGGCGGGCACTA
18694149 CGT
894 CGT
18694152 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
18694217 TCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * **
18694282 TCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTA-TTTTCACGATTTTTGAAATTTTTTGTG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* *
18694346 GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
18694411 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
18694476 ATTT-AAAAAAGTGTCCCCATTTTAAACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* **
18694540 AAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAACAGC
391 AAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
18694605 CAAGTAC
455 CAAGTAC
18694612 ATGCCCAAGC
Statistics
Matches: 7191, Mismatches: 1047, Indels: 598
0.81 0.12 0.07
Matches are distributed among these distances:
861 322 0.04
862 16 0.00
863 6 0.00
865 5 0.00
866 11 0.00
867 2 0.00
868 4 0.00
870 3 0.00
871 62 0.01
872 11 0.00
873 116 0.02
874 6 0.00
875 184 0.03
876 64 0.01
877 364 0.05
878 3 0.00
879 9 0.00
880 275 0.04
881 12 0.00
882 19 0.00
883 34 0.00
884 149 0.02
885 120 0.02
886 129 0.02
887 136 0.02
888 28 0.00
889 55 0.01
890 22 0.00
891 238 0.03
892 219 0.03
893 184 0.03
894 361 0.05
895 564 0.08
896 120 0.02
897 297 0.04
898 600 0.08
899 160 0.02
900 447 0.06
901 29 0.00
902 190 0.03
903 389 0.05
904 478 0.07
905 6 0.00
906 6 0.00
907 2 0.00
908 3 0.00
909 6 0.00
910 1 0.00
911 3 0.00
912 3 0.00
913 4 0.00
914 9 0.00
915 4 0.00
916 2 0.00
917 4 0.00
918 7 0.00
919 2 0.00
920 9 0.00
921 3 0.00
922 3 0.00
923 8 0.00
924 2 0.00
926 5 0.00
927 9 0.00
928 4 0.00
929 6 0.00
930 3 0.00
932 7 0.00
933 3 0.00
934 2 0.00
935 6 0.00
936 1 0.00
937 1 0.00
938 1 0.00
939 5 0.00
940 2 0.00
941 2 0.00
942 1 0.00
943 2 0.00
944 1 0.00
945 2 0.00
946 4 0.00
947 19 0.00
948 374 0.05
949 29 0.00
950 2 0.00
951 2 0.00
952 7 0.00
953 11 0.00
954 6 0.00
955 68 0.01
956 9 0.00
957 9 0.00
958 14 0.00
959 40 0.01
960 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
GTGCGGCCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAATCGGGTCCCCCTCTA
CGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAAATCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGT
Found at i:18692082 original size:26 final size:26
Alignment explanation
Indices: 18692053--18692105 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18692043 CCGGTCCAAT
18692053 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18692079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18692105 C
1 C
18692106 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18693935 original size:26 final size:26
Alignment explanation
Indices: 18693899--18693951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693889 CCGATTCGAT
*
18693899 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693951 C
1 C
18693952 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18697311 original size:26 final size:26
Alignment explanation
Indices: 18697275--18697327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18697265 CTGATTCGAT
*
18697275 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
*
18697301 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
18697327 C
1 C
18697328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:18699070 original size:26 final size:26
Alignment explanation
Indices: 18699041--18699093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18699031 CCGATCCGAT
18699041 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
18699067 CTTAGACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18699093 C
1 C
18699094 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18703550 original size:26 final size:26
Alignment explanation
Indices: 18703521--18703571 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18703511 GGTCCGATCA
18703521 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18703547 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18703572 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18704109 original size:901 final size:898
Alignment explanation
Indices: 18695074--18710668 Score: 18651
Period size: 875 Copynumber: 17.6 Consensus size: 898
18695064 TTTTTCACGA
* * * * * * * *
18695074 TTTTAAACTTTTTTCAGAATGAGCTTTGGCCCCAAACATGGTAAACGTGATCTTTGTATTTCTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18695139 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTA-ACAGATTTTGTGACCATTTGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAA
* *
18695203 AAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
18695268 TTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
18695333 GCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGTC
260 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCC
* * ** * * *
18695398 AGTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCTA-CAGCAT
325 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC-ACCAGCAC
* ** * *
18695462 ATGCTCGAGCCCAGCATGTGCTATCGTAACCCTCAGTCTGATCTGATCTTAGACAGGGAATGAAC
389 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC-G-TC-GATCTTAGACTGGGAATGAAC
* * * * **
18695527 TCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAATAAGCGTGCGGG
450 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * **
18695592 CGCTCAATCGGCCAGAGGGGCGGGATGCACAAGCCGGGGACCGG-CTGGGTCCCCCAT-TATGTG
515 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCC-TCTGCGTG
* *
18695655 CTGCTGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
578 CTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18695720 CCTAAGCCAACCGACG-AA--A---TG-A-GCTGGCGGGCGGGCACTACGCTGGTCAGAGAGACG
643 CCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* *
18695777 GGATGCGCAAGCCGTGGA-CAGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACG
708 GGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
18695841 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
772 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * * * * *
18695906 CATGGCAAGACAACTCATTTTTTATTTTTCATGGTTTTTGAAACATTTTGCGATTCAGGATT
837 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
18695968 TTTTGAAATTTCTTCGGAAGGAGTTTTGGCTCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18696033 TGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGT----A-TTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18696093 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18696158 TAAGGAGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
196 TAAGG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
18696223 GCACCCATCGCACATCATGT-CTGCACACCCCCCCGACCCCCTCGATCGCCGGAACCCCAATGTC
260 GCACCCATCGCACATCATGTGC-GCACA-CCCCCCGGCCCCCT-GATCGCCGGAACCCCAATGCC
* ** * * *
18696287 GCTGGTCAGGTTCAACAACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
322 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * *
18696352 ACATGCCCAAGCCCAGCATGTGTTGCTGTAA--CAC-TCG--G-TC-----C-------G-A-TC
387 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTC
* * *
18696397 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGTG
452 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
18696460 CTCAGCCGGCCAGAGGGGCGAGATTTCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTG
517 CTCAGCCGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * * * * * *
18696525 CCAATCTTGCTACAGCAACCCTCAGTCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGGCT
581 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * * * * *
18696590 AAGCCAACTAACGAAACTAGCGTGCGGGCGGGCGGGCGGGCACTACGCAGACCAGAGAGATGGGA
646 AAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
18696655 TGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCC
711 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * *
18696720 AATGCTATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTG
776 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
18696785 GCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCGGGA-T
841 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18696841 TTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACCTAGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18696905 TGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18696970 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** * *
18697035 TAAGGGGGTGTGAGTTCTTAAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
18697100 CACCCATCACACATCATGTGCGCACACCCCCTCGACCCCCCGATTGCCGGAACCCCAATGCCGCC
261 CACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCTGATCGCCGGAACCCCAATGCCGCC
* ** * *
18697165 GGTCAGGTTATCCGGTGATGCTCCGGCGA-GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACG
325 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* *
18697229 TTCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATTCGATCTTAGACTGGGAATGAACT
390 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC-G--TCGATCTTAGACTGGGAATGAACT
* * * * *
18697294 CCATATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGCC
451 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
18697359 ACTCAACCGGCTAGAAGGACGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
516 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* *
18697424 CC-A-----------CAACCCTCGGT-TGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
581 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
18697476 AAGCCAACTGACGAAACGAGCGGG-AGG-GTGGACGAGCGGGCACTACGCAGGCCAGAGAGACGG
646 AAGCCAACCGACGAAACGAGCGGGCAGGCG-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
18697539 GATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* * * *
18697604 CAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTAA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * * * * * **
18697669 TGGTGAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAGCTTTTTGCGGTTTAGGATT
839 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
** *
18697729 TTTTTTAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18697794 TGGCATGCA-AAAAAAGAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
** * *
18697858 AAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18697923 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAACTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * ** *
18697988 GCACCCATTGCACATCATGTGTGCACACCCCCCGACCCCCTTAATCGTCGGAACCTTAATACCGC
260 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-TGATCGCCGGAACCCCAATGCCGC
*
18698053 CGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGTACCAGCA
324 CGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18698117 CATGCTCGAGCCTAGCATGTGCTGCCGTAA-CC-C-TCG--G----T---CT-GG--T---CT--
388 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCC
* * * ** * * *
18698162 G-AT-CTTTGACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAAAAAACGTGCGGGTGT
453 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
** * ** * * * *
18698225 TCAGCCGGCCAGAGGGGCGGGATAAGCAAGCCGAGGATCGACCAGGTCCCCCTCTACGTGATACC
518 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * ** * * *
18698290 AATCTTACTGCCGCAACCCTCGGT-TCACTCCGAT-TTATACTAGGAATGAACTCCGTGTGCCTA
583 GATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * ** *
18698353 AGCCAATCAACGAAAGGAGCGGGCAGGCGGTCGAGCAGGCACTACGTTGGTCAGAGAGACGGGAT
647 AGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
18698418 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
712 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
18698483 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGATGTTTCATGG
777 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
18698548 CAAGACGACTCGTTTTCGATTGTTCACAATTTTTAAAACTTTTTACGGTTCAGGA-T
842 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18698604 TTTTAAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18698669 TGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
**
18698734 AGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * **
18698798 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGCATAGTTGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
18698863 GCACCCATCGCACATCATGTGTGCACACCCCCCCTGCCCCCTCGATCGTCAGAACCCCAATGCCG
260 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCT-GATCGCCGGAACCCCAATGCCG
* * * * ** * *
18698928 CCAGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGTAGAAAAATGTGGCACCAGCA
323 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18698993 CATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAA
388 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-CG-T-CGATCTTAGACTGGGAATGAA
* * *
18699058 CTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGG
449 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * ** ** * *
18699123 GCCCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAAGGATCGACCGTGTCCCCCTCTGTGTGC
514 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* ** *
18699188 TACCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
579 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * * * *
18699253 CTAAGCCAACCGACGAATTGAAC--G--GGCGGGCGGGCAGGCACTACGCCCGCCAAAGAGACGG
644 CTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
18699314 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
18699379 TCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * **
18699444 TGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAATCTTTTTACGGTTCTTGATT
839 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
** * * **** *
18699504 TGTGAAAAATTTTTTAGAAATCCTTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
1 T-TTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
18699569 GTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
64 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * *
18699634 AAAATGAT-CGCATTTCTGAAACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
129 AAAGTG-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
18699698 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAC
193 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * ** * * *
18699763 CAGCACCCATTGCACAT-ATTGTGGGCGCGC-CCCCCCACCCCCCTTATCGTCGGAACCCCGATG
258 CAGCACCCATCGCACATCA-TGT--GCGCACACCCCCCGGCCCCCTGATCGCCGGAACCCCAATG
* *
18699826 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCA
320 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * * *
18699891 GCACATGCTTGAGCCCAACATGTGCTACCGTAA-CC-C-TCG--G----T---CT--G---G---
385 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAAC
* * *
18699936 TCCG-AT-CTTAGATTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCGGG
450 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
18699999 TGTTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCAG-CTAGGTCCCCCTCTACGTGC
515 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGC
* * * * * *
18700063 TGCCGATCTTACTGCCGCAACCCTCGGT-TCGCTCTGATCTTAGACTAGGAATGAACTCCGTGTG
579 TGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18700127 CCTAAGCCAATCGACGAAATGAGCGGTCAGGCGGGCGGGCAGGCACTACGTCGGTCAGAGAGATG
643 CCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
18700192 GGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTGT
708 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
18700257 GCCAACGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
773 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * ** *
18700322 ATGGCAAGACGACTCGTTTTTTATTGTTCACGATTTTCAAAACTTTTTACGGTTTGGGATT
838 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18700383 TTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
18700447 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18700512 AGTGTCCCCATTTCAGACACTTTAATGGCAACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * * *
18700577 TAAGGGGGTGTGGGTTCTCAAGGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
18700641 CACCCATCACACATCATGTGCACATACCCCCTCCCGGCTCCCCCT-ATCGCCGGAACCCCAATAC
261 CACCCATCGCACATCATGTGCGC--ACACCC-CCCGG--CCCCCTGATCGCCGGAACCCCAATGC
* **
18700705 CGCCGGTCAGGTTCTCCGACGGTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG
321 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
18700770 CACATGCCCAAGCCCACCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATG
386 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-C-G-TCGATCTTAGACTGGGAATG
* * * * *
18700835 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCCATGGAACGAGCATGC
447 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
*
18700900 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT-GGATCGGGTCCCCCTCTGCG
512 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCG
* * * * * *
18700964 TGTTGCCAATCCTGCTGCTGCAACCCTTGATCTGGTCTGATCTTAGACCT-GGAATGAACTCCGT
576 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA-CTGGGAATGAACTCCGT
* * ** ** * *
18701028 ATGCCT-AGCCCAA-C--CG-AA--A--TGGTAAACGAACAGGCGGGCACTACGGCGGGCCAAGG
640 ATGCCTAAG-CCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTAC-GCCGGCC-A-G
* * * * *
18701084 AGGAGACGGGATACGCAAGGCCG-GGAATCGAGT-GGGTGGTCGGTAGG-TTAGTCACAT-ATCA
701 A-GAGACGGGATGCGCAA-GCCGTGG-ATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
18701145 TA-TTCTGCGTGCCAATTCACATTTTTATGGCTTGTAAATTCATACAATCGGTTTCCCTTAAGCC
762 TATTTCTGCGTGCCAATGC-CATTTTTATGGCTTGTAAATTCATACAAT-GG--TCCCTTAAGCC
* * * * *
18701209 -TCACATGAAGTTTTCATGGCAGGGACGACTCG-TTTCTGTTTTTTCATGATTTTT-AAAATTTT
823 TTCACGTGAAG-TTTCATGGCA-AGACGACTCGTTTTCT-ATTTTTCACGATTTTTGAAACTTTT
18701271 TAGCGG-TCGGGATTT
885 TA-CGGTTCGGGA-TT
* * *
18701286 TTTTGAAATTTTATGGT-GGAAGGATTTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTT
1 TTTTAAAATTTT-T--TCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
18701350 TTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACT-GAAGTG-ACAAGATTTCCTGTGGACCATT
62 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT--TGT-GACCATT
* **
18701412 TGAAAAAAGTGTCCCC-TTTCAGACATTTTAATTGGCTACTGGGCAAAAAACCTGTAAAATCTCA
124 TGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACT-GGCAGCAAACCTGTAAAATCTCA
18701476 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
187 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18701541 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGCCGAAACCC
252 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCTGATCGCCGGAACCC
* * *
18701606 CAATGCTGCCGATCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
315 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
*
18701671 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACTCTCGGTCTGGTCCGATCTTAGACTG
380 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC--GT-CGATCTTAGACTG
* * * *
18701736 GGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCTGTATACGTAAGTCAACCCACGAAACGA
441 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * ** * *
18701801 GCGTGCAGGCGCTCAGCCGGCCAAAGGGGCAGGATGAGCAAGCCAAGGATCGATCGGGTCCTCCT
506 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* ** * * * * * * * * * *
18701866 CTACGTGCCACCAATCCTACTGCGGCAACACTTGGTTTGGTCCAATCTTCGACTAGAAATGAACT
571 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
** * *
18701931 CCGTATGCCTAAGCCAACTAACGAAAC-A---AGCAGGCGGGCGGGGGGGCACTACGCCGGCCAG
636 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAG
*
18701992 A-AGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
701 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
18702056 TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTG
766 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
18702121 AAGTTTGATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCGG
831 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGG
18702185 GATT
895 GATT
* * * *
18702189 TTTTAAAATTTTTTCGGAAGGAG-TTTGTGCGCCAAACTTGGTATACATTATCCTTGTATTTTTG
1 TTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * *
18702253 TTGGCGTGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
18702318 AAGTGTCCCCATTTCAGACACTTTAATGGCT-CATGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
18702382 TTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTACC
194 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * **
18702447 AGCACCCATCGTACATCATGTGCGCACACCACCCCGACCCCTCCGATCGCCGGAACCCCAATTTC
259 AGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCC-CTGATCGCCGGAACCCCAATGCC
** * * * * * ** *
18702512 GTAGATCAGGTTCTCTGACGATTCTCC-AGTGATGTTGCCCCGGTGAAGAAAAATGTGGCACCAG
322 GCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* *
18702576 CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCTTGTCCGATCTTAGACTGGGAATG
386 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGTC--GT-CGATCTTAGACTGGGAATG
** *
18702641 AACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTCC
447 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
18702706 GGGCACTCAGCCGGCCAAAGGGGTC-GGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCT
512 GGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
* * * * *
18702770 TGCTGCCGATCCTACTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTTCGTA
576 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18702835 TACCTAAGCCAACCGATGAAACGAGC--G-A-----GCGGGCGGGCACTACGCCAGCCAGAGAGA
641 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * *
18702892 CGGG-TGCACAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
706 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
18702956 GTGCCAATACCATTTTTGTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTT
771 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** **
18703021 TCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATT
836 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
** * * *
18703084 TTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18703149 TGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18703214 AATGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18703279 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
18703344 CACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGTCA
261 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCCG
* * * * *
18703409 GTCAGGTTCTCCGGCGATGCTTCGATGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACAT
326 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
** ** *
18703474 GCTTGAGCCCAGCATGTGCTGTTGCAACCCTCGGTTCGGTCCGATCATAGACTGGGAATGAACTC
391 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G-TC-GT-CGATCTTAGACTGGGAATGAACTC
* *
18703539 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCG
452 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * **** * *
18703604 CTCAGCTGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTATGACTCTGCATGCTAC
517 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* **
18703669 CGATCCTGCTGCCGGAACCCTCGGTCTGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCTA
582 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*** * * *
18703734 AGCCAATTAACGAAACGAGCGGGCAGACGGGCAGGCGGGCACTACGCCGGCCTGAG-GACGGGAT
647 AGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * **
18703798 GCGCAAGCCGTGGATAGATAGGGTGGTTGTTGGGTTTAGGCACATCTTCATATTTCTACGTGCTG
712 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
**
18703863 ATGCCATTTTTATGGCTTGTAAATTCATACAACCGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
777 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * **
18703928 CAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAGTTTTTGTGGTTCGGGATT
842 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* ** * * * *
18703985 TTTTAAGATTTTTTCAAAAGGATTTTTGGTCCCAAGCTTGGTATACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18704050 TGGCATGCACAAAAAGATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18704115 AGTGTCCCCATTTCAAACAATTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18704180 TAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
18704245 CACCCATCGCACATCATGTGCGCACACCCCCCATGG-CCCCTCGATCGCCGGAACCCTAATGCCG
261 CACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCT-GATCGCCGGAACCCCAATGCCG
*** ** * *
18704309 TATGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
323 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18704374 CATACCCGAGCCCAACATGTGTTGCCGCAA-CC-C-TCG--G-TC-----C---G---G---TCC
388 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCC
* *
18704419 -AATG-TTAGACTGGGAATGAACTCCGTATGCCTAA---AACCCACGAAATGAGCGTGCGGGCGC
453 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * ** * *
18704479 TC-GACCGGCCCGAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTACCCCTCTGCGTGCT--
518 TCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * **
18704541 -G--CC-G-T-----AACCCTTGGTCCGATCAAATCTTAGACTGGGAATGAACTCCGTATGCCTA
582 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * *
18704596 AGCCAACTAACGAAACGAGCGGGCAGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
647 AGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
18704661 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCA
712 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
18704726 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCAGGG
777 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
18704791 CAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
842 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * * *
18704848 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTAGAAGACGTTATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18704913 TGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
18704978 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18705043 TAAGGGGGTATGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** *
18705108 CACCCATCGCACATCATGTGCGTACACCCCCCCGGGCCCCC-GATCGTCGGAACCTTAATGCCCC
261 CACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCTGATCGCCGGAACCCCAATGCCGC
* * * * * * *
18705172 CAGTCAAGTTCTCCGGCGATGCTCCGGCGATGGTTCGCCGACGAAGAAAAATGCGACACCAGCAC
324 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * *
18705237 ATGCTCGAGCCCAGCATGTTCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACAGGGAATGAAC
389 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGT-C-GT-CGATCTTAGACTGGGAATGAAC
*
18705302 TCCGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
450 TCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
18705366 GCGCTCAGCCGGCCAGAGGGGCGAGATGCGGAAGCCGAGGATCAGTCGGGTCCCCCACTACGTGC
514 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * * * *
18705431 TGTCGATCCTACTACCACAACCCTCAGTTTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGC
579 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** *** * * *
18705496 CTAAGCCAACCGACGAAACGAGCGGGGGGGCGGG-GTATGGGCACTGCACCGACCAGAGAGACGG
644 CTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * * * *
18705560 GATGCGCAAGCCGAGGATCGATAGGGTGGCAGGTGGGTTTAGGTACATCATCATATTTCTACGTG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
18705625 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTTA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18705690 TGGCAAGATGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
839 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18705750 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18705815 TCG-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18705879 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** * * * * *
18705944 TAAGGGGGTGTGAGTTCTCGAGGTTTGACAAGGCATAGGGGACAAATATAAGGGCTATGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
18706009 CACCCATCACACATCATGTGCGCACACCCCCCCGGGCCCC-GATCGTCAGAACCCCAATGCCGCC
261 CACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCC
* * * * *
18706073 GGTCAGGTTCTCTGACGATGCTCTGCCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACA
325 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
*
18706138 TGCTCGAGCCCAGCATGTGCTGCCGCAA-CC-C-TCG--G-TC-----C-----A-G---TCCG-
390 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCCGT
* * ** *
18706182 A-CCTTAGACTAGGAACAAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTC
455 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
18706246 AGCTGGCCAGAAGGGAGGGATGCGGAAGTCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCAA
520 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* ** * * * * *
18706311 TCCTG-TGCCGTAACCCTCAATTTGGTTCAATCTTAGACTGGGAATGAACACCATATGCCTAAGC
585 TCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
18706375 CAACCGACGAAACGAGCGGG--GG-GGAGCGAGGTATGGGCACTACGCCGGCCACAGAGACGGGA
650 CAACCGACGAAACGAGCGGGCAGGCGG-GCG-GG--CGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
18706437 TGCGCAAGCCGAGGATCGATAAGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCC
711 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * * *
18706502 AATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCATTAAGCCTTCACATGAAGTTTTATG
776 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
18706567 GCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTATGGTTTGGGATA
841 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
18706625 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTTTTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18706690 TGGGATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
18706755 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * ** *
18706820 TAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGCATAGGGGGTAAATATAAGGGCCATGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
18706885 CACCCATCACACATCATGTGCGCACACCCTCCCCGGGCCCCC-GATCGTCGGAACCCCAATGCCG
261 CACCCATCGCACATCATGTGCGCACA-CC-CCCC-GGCCCCCTGATCGCCGGAACCCCAATGCCG
*
18706949 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCGCCGACGAAGAAAAATGCGGCACCAGCA
323 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * **
18707014 CATGCTCGAGCCCAGCATGTGCTGTCTTAA--C-C--C-TCGATC-----C-----A-G---TCC
388 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCC
* * *
18707059 G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGGGCAC
453 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * *
18707122 TCAACCGACCAGAGAGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC
518 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
18707187 GATCCTGGTACCGCGACCCTCGGTTTGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCCTAA
583 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *** * * *
18707252 GCCCACCAACGAAATGAGCGGGGGGGCGGG-GTATGGGCACTACGCTGACCAGAGAGACAGGATG
648 GCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
18707316 CGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAA
713 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
18707381 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
18707446 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATT
843 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18707502 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTGGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
18707567 TGGTATACACAGAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18707632 AGTGTCCCCTTTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
18707697 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * *
18707762 CACGCATTGCACATCATGTGCGCACACCCCCCCCCGACCCCCCCGATCGTCGGAACCGCAATGTC
261 CACCCATCGCACATCATGTGCGCACA---CCCCCCG-GCCCCCTGATCGCCGGAACCCCAATGCC
** * *
18707827 ATCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
322 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** *
18707892 ACATGCTCGAGCCCAATATGTGCTGTCGCAA-CC-C-TCG--G-TC-----C--GG---G----C
387 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTC
* *
18707937 CG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCA
452 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-
* * ** ** *
18708000 G-TCAACCGGCCCGAAAGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTG
516 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * ** * *
18708064 CTGATCTTGCTGCCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCT
581 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * *
18708129 AAGCCAACCGATAAAACGAGTGGGCGGGCAGGCGGGCAGGCGGGCAGGCACTACGTCGGCGAGAG
646 AAGCCAACCGACGAAACGA----GCGGGCAGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAG
* *
18708194 GGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
703 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
** * * **
18708259 TATGTGCCAATGCCATTTTTATGGCTTGTAAATTGATAGAATCATCCCTTAAGCCTTCACGTGAA
768 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * *
18708324 GTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTGCGATTCGGGAT
833 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
18708389 T
898 T
* * * * * *
18708390 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCGAAGTTGGTAGACATGATCCCTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18708455 TGGCATGGACAAAAAAATTCAGCTAAAAACATCGAAGTGTATAAGATTTTGTGACCATTTGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * * *
18708520 AAATGTCCCCATTTTAGACACTTTAATGGTTATTGGCAGCAAACCTGCAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18708585 TTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGAACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * ** *
18708650 GCACCCATCACACATCATGTGCGGACACCCCCCCGGCCTCCCCGATCGCCGAAACCTTAATGTC-
260 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCTGATCGCCGGAACCCCAATGCCG
* * * *
18708714 ACGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCAACAGCA
323 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * * * **
18708779 AATGCTCGAGCCTAGCATGTGTTGTCGCAACCCTCGGTCCAAGCCGATCTTAGACTACGAATGAA
388 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-C--GTCGATCTTAGACTGGGAATGAA
* *
18708844 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGG
449 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
18708909 GCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGAGCGGTCGGTTCCCCCTCTGCGTGC
514 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* ** * * *
18708974 TACCGATCCTGCTGCTACAACCCTCGGTCCGGTTCGATCTTATACTGGGAATGAACTCCGTATGC
579 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18709039 CTAAGCCAACCGATGAAACGAGTGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGG
644 CTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * * * *
18709104 CATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTTTGCATG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
*
18709169 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18709234 TGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACATTTTATGGTTCGGAATT
839 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18709294 TTTTAAAATTATTTT-GGAAGGTGTTTTGGCCCCAAA-TTGATTAGACCTGATCCTTGTATTTTT
1 TTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTTTT
*
18709357 GTTGGCCTGCACAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
64 GTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
18709422 AAAAGTGTCCTCATTTCAGAC-CTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT
128 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
18709486 TTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGAC
193 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
18709551 CAGCACCCATCGCACATCATGTGTG--CACCCCCCGGCCCCATCGATCGCCGGAACCCAAATACC
258 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCT-GATCGCCGGAACCCCAATGCC
* ** *
18709614 GCCGGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
322 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
18709679 ACATGCCCGAGCCTAGCATGTGCTGTCGTAA--C-C--C-TCGA--TT----T--G-AT---CT-
387 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTC
* *
18709725 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGATAGCGTGCGGG
452 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG--AGCGTGCGGG
* ** * * *
18709787 CGGCTCAGCCCGG-CAGACGGTTGTGATGCGCAAGTCGGGCATCGGATC-GGTCCCCC-CTGCGT
515 C-GCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGT
* * * * *
18709849 GCTGCCAATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCGTAT
577 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18709914 GCCTAAGCCAACCGACGGAACGA-C--G-A-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAA
642 GCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG--
* *
18709974 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTG
705 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
18710039 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGT
770 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
18710104 TTCATGGGAAGATGACTCGTTTTTTATTTTTCACGATTTTTGGAACTTTTTACGGTTCAGGATT
835 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * ** *
18710168 TGTTAAAATTTTTTCAGAAGAAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
18710233 TGGCATACA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTCTGTGACCATTTGAAAAG
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18710297 AGTGTTCCCATTTCAGACACTTTAATAGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
18710362 TAAGGGGGAGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCATGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * * * *
18710427 CCCCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCAGAACCCTAGTACCGCC
261 CACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCTGATCGCCGGAACCCCAATGCCGCC
** * *
18710492 GGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACG
325 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
18710546 TGCCCGAGCCCAACATGTGCTGCCGTAGCCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACT
390 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC--GT-CGATCTTAGACTGGGAATGAACT
* *
18710611 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
451 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
18710669 GGCAAGCGGG
Statistics
Matches: 12783, Mismatches: 1516, Indels: 810
0.85 0.10 0.05
Matches are distributed among these distances:
862 195 0.02
863 445 0.03
864 167 0.01
865 4 0.00
866 76 0.01
867 100 0.01
868 10 0.00
869 4 0.00
870 5 0.00
871 6 0.00
872 175 0.01
873 237 0.02
874 498 0.04
875 1068 0.08
876 879 0.07
877 706 0.06
878 396 0.03
879 580 0.05
880 11 0.00
881 7 0.00
882 9 0.00
883 16 0.00
884 4 0.00
885 12 0.00
886 330 0.03
887 61 0.00
888 360 0.03
889 539 0.04
890 185 0.01
891 94 0.01
892 101 0.01
893 313 0.02
894 119 0.01
895 454 0.04
896 38 0.00
897 7 0.00
898 31 0.00
899 719 0.06
900 327 0.03
901 937 0.07
902 693 0.05
903 423 0.03
904 525 0.04
905 58 0.00
906 80 0.01
907 425 0.03
908 90 0.01
909 48 0.00
910 11 0.00
911 21 0.00
912 184 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCCG
GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
CCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
Found at i:18705313 original size:26 final size:26
Alignment explanation
Indices: 18705284--18705336 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18705274 CCGGTCCGAT
18705284 CTTAGA-CAGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
18705310 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
18705336 C
1 C
18705337 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:18708164 original size:8 final size:8
Alignment explanation
Indices: 18708151--18708177 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
18708141 AAAACGAGTG
18708151 GGCGGGCA
1 GGCGGGCA
18708159 GGCGGGCA
1 GGCGGGCA
18708167 GGCGGGCA
1 GGCGGGCA
18708175 GGC
1 GGC
18708178 ACTACGTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.63, T:0.00
Consensus pattern (8 bp):
GGCGGGCA
Found at i:18708866 original size:26 final size:26
Alignment explanation
Indices: 18708827--18708879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18708817 CCAAGCCGAT
18708827 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
18708853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
18708879 C
1 C
18708880 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:18710621 original size:26 final size:26
Alignment explanation
Indices: 18710592--18710644 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18710582 CTAATCCGAT
18710592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18710618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18710644 C
1 C
18710645 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18711363 original size:26 final size:26
Alignment explanation
Indices: 18711334--18711389 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18711324 CCGATCCGAT
*
18711334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18711360 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18711386 CTTA
1 CTTA
18711390 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18712250 original size:26 final size:26
Alignment explanation
Indices: 18712221--18712273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18712211 CCGGTCTGAT
* *
18712221 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18712247 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18712273 C
1 C
18712274 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18713145 original size:26 final size:26
Alignment explanation
Indices: 18713116--18713194 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18713106 CCTATCCGAT
* *
18713116 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
18713142 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18713168 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18713194 C
1 C
18713195 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18714077 original size:26 final size:26
Alignment explanation
Indices: 18714048--18714097 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18714038 CCGGTTTGAT
*
18714048 CTTAGATTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18714074 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18714098 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18714970 original size:26 final size:26
Alignment explanation
Indices: 18714934--18714985 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18714924 CTGGTCTGAT
*
18714934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
18714960 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18714986 TCTAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18715869 original size:26 final size:26
Alignment explanation
Indices: 18715829--18715881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18715819 CTAGTCTGAT
*
18715829 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18715855 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18715881 C
1 C
18715882 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18716744 original size:26 final size:26
Alignment explanation
Indices: 18716715--18716767 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18716705 CCGATCCGAT
*
18716715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18716741 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18716767 C
1 C
18716768 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18717649 original size:26 final size:26
Alignment explanation
Indices: 18717610--18717662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18717600 CCAGTCCGAT
* * *
18717610 CTTAGACTGGGAATGGACTTCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18717636 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18717662 C
1 C
18717663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18718544 original size:26 final size:26
Alignment explanation
Indices: 18718508--18718558 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18718498 CCAGTCCAAT
* *
18718508 CTTAGGCTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18718534 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
18718559 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Done.