Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 101 of 117
Found at i:18721208 original size:26 final size:26
Alignment explanation
Indices: 18721170--18721219 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18721160 CAGGTCCGAT
*
18721170 CTTAGACTAGGAATGAACTTCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
18721196 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
18721220 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:18722999 original size:26 final size:26
Alignment explanation
Indices: 18722963--18723015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18722953 TTGGTCTGAT
18722963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18722989 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18723015 C
1 C
18723016 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18723882 original size:26 final size:26
Alignment explanation
Indices: 18723846--18723898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18723836 CCCGTCTGAT
*
18723846 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18723872 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18723898 C
1 C
18723899 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18725289 original size:896 final size:895
Alignment explanation
Indices: 18710618--18726625 Score: 20273
Period size: 895 Copynumber: 17.9 Consensus size: 895
18710608 ACTCCGTATG
18710618 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG---GC--G-GG-
* * * *
18710683 CGGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATACGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18710748 TTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18710813 TCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
18710877 AAACTTTTTACGGTTCCGGATTTTTGAAAATTGTTTTC-GAAGGAGTTTTAGCCCCAAACTTGGT
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
18710941 AGACGTGATCCTTTTATTTTTGTTGCCATGCATAAAAAAATTCAACAAAAAACTCGAAGTGTACA
318 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18711006 AGATTTTGTGTCCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTACTGGTAGCAAA
383 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18711070 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
448 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18711135 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAGCCCCCCCG
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCG
* * * *
18711200 ATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTTTTCGGCGATGCTCCGGCGATGGTGCCCCGGC
577 ATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * * * * * * * * *
18711264 GAAGAAATATACAGCACCAGCACATGCTCGAGCCTAGCATGTACTGCCGTAACCCTTGATCCGAT
641 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
18711329 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCTTAAGTC
706 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18711394 AACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATC
771 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
18711459 GGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTACAGCAGCCCTTGGTCTGGTCCGAT
836 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * ** *
18711519 CTTGGTCTGGGAATGAACTCCGTATACCTAAGCCAACTGATTAAACGAGCGGGTCGGTGGGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----G-C-G-GGGCGGG
* * * **
18711584 CGGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18711649 TTAAGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18711714 TCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *** *
18711779 AAACTTTTTGCGGTTCAGAATTTTTTAAAATTTTTTTGGAAGCTTTTTTGGCCCAAAACTTGGTA
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * ** *
18711844 GATGTGATCCTTGTATTTTTGTTGACGTGCGTAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
319 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18711909 GATTTTGTGA-CATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
18711973 TTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGCTCTAGA-GTTTGATGAGGGATAGGGGGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
18712037 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCGCCCGA
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGA
* * * * *
18712102 TCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---T--G-C--T--T----CGACAA
578 TCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
** * * * * *
18712153 AGAAAAATATGGCACCAACACATGCCCAAGCCTAGCATGTGCTGCCACAACCCTTGGTCCGGTCT
643 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* *
18712218 GATCTTAGACTGGTAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
708 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * ** *
18712283 CCCACGAAACGAGCGTGCGGGCACTCAACCGACCAAAGCGGTAGGATGCGCAAGCCGGGGATCGG
773 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * **
18712348 TCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCCGCCGCAACCCTCAATCCGGTCTAAT
838 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
*
18712406 GTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCAC
* *
18712470 TACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18712535 CATCTTCATATTTCTTCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** * * * ** *
18712600 AGCCTTCTTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTCAAAACCTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
18712665 TTGTGGTTCGGGACTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACATGA
261 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
18712730 TCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * *
18712795 TAACCATTTGAAAAAAATGTCCCAATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
18712860 ATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* ** * *
18712925 AGGGCCAAGTACCAACACAAATCACACATCATGTGCGCACACCCCCCGGCTCCCCCGATCGTCAG
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTCGG
* * * * *
18712990 AACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC-ATGGAAGAAAA
585 AACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAA
* *
18713054 ATGCGTCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCTATCCGATCTT
649 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G--------G-TC--
*
18713119 ATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
702 ---C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
18713184 ACTCAGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGCCAGAGGGTCGCG
753 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
18713249 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTT
818 ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* *
18713314 GGTCCGATCCGAT
883 GGTCTGGTCCGAT
* * *
18713327 CTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACGGACGAAACAAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G-A-GC--G-GGG
* * * *
18713392 CGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGT
55 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
18713457 GGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
120 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18713522 ATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATT
185 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** **
18713587 TTCGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
250 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
** ** * * *
18713652 GGTAGTTGTGATCCTTGTATTTTTGGTGGCATGCA-TAAAAAATTTAGCTAAAAACTCGAAATGT
315 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
18713716 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC
380 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
18713781 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
445 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
18713846 GGG-CAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCGCACACCCCCGGCACC
510 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGC-CC
* * ** * *
18713910 CCCGATCGCCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTACCCT
573 CCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * ** * * * *
18713975 GACGAATAAACATGCGACACTGGCACATGGCCGAACCCAGCATGTGCTGTCACAACCCTCGGTCC
638 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
18714040 GGTTTGATCTTAGATTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAA
703 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
18714105 GTCCACCCATGAAACGAGAGTGCGGGCGCTTAGCTGGCCAGAGGGGCGGGATGCACAAGCCGGGG
768 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * * * * *
18714170 ATTGATCTGGTCTCACTCTGCGTGCTACCGATCCTGTTGTCGTAACCGTCAGTCTGATCTGAT
833 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * *
18714233 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGAGGCCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--CGA-GCGGGGCGGGCGGG
* * * *
18714297 CACTACGCCAGCCAGAGAGACGGGATGCACAAGCCATGGACCGATAGGGTGGTAGGTGGGTTTAG
63 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
18714362 GCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCTTACAATAGTCCC
128 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18714427 TTAAGCCCTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
18714492 TTTTTGCGGTTCGAGATTTTTT-AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACA
258 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
18714556 TGATCC-TATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
18714620 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * ** *
18714685 AAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGCACCAAC
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
18714750 ATAAGGGCCAAGTACCAACACCCATCGCACATCACGTGCGCACACCCCCCTCGGCCCCCCGATCA
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCGATCG
*
18714815 TCGGAACCCCAATGCCG-TCGGTCAGGTTCT-C--C-A-G---C--C-ATGGTGCCCCGGCGAAG
581 TCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * *
18714868 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGATGCCGCACCCCTCGGTCTGGTCTGA
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
* * * *
18714933 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCTGTATGTCTAAGTAAACC
710 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
18714998 CACAAAATGAGCGTACGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATC
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * * *
18715063 GGGTCCCCCT-TGACGTGCTACCGATCCTACTACCGTAACCCTCTGTCTGGTCCAAT
840 GGGTCCCCCTCTG-CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * *
18715119 CTTAGATTGGGAATCAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGCGCGGGTTGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-CGAGC-GG--GGCGGG
* * *
18715184 CGGGTACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** *
18715249 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18715314 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTA
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
18715379 AAACTTTTTACGGTTCGGGATTTTTTAACATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18715444 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAGAAAAAATTCAGATAAAAACTCGAAGTGTAC
319 GACGTGATCCTTGTATTTTTTTTGGCATGC-ACA-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
18715509 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAA
382 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
18715574 ACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGG
447 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
18715639 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCCGGCCCTCC
512 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CC
* *
18715704 CGATCGCCGGAACCCCAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGA
575 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* ** * **
18715758 CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCAACCGCAACCCTTGGTCTAG
640 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18715823 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCCTAAGT
705 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18715888 CAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCTGGGGAT
770 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * *
18715953 CGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGATCTGGTCCAAT
835 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
18716014 CTTACATTGGGAATGAACT-CGATATGCCTAAGCCAACCGATGAAACAAGC-GGGCGGGCGGGCA
1 CTTAGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCA
* * * * *
18716077 CTACGCCGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAATGTGGGTTTAGGA
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** *
18716142 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18716207 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCAATTTTTCATGATTTTTGAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * * * *
18716272 TTTCCGTTTTGAGATTTTTTAAAATTTTTT-TGATGGAGTTTTTGCCCCAAACTTGGTAGACGTG
260 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * ** * * * *
18716336 ATCATTGTAATTTTGTTGAAATGCATAAAAAAATTCAGCCAAAAAATTGAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
**
18716401 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
18716466 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18716531 AAGGGCCATGTTA-CAGCACCCATCGCACATCATGTGTGCACA-----C--CCCCCCGATCGTCG
520 AAGGGCCAAG-TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * * * * **
18716588 GAACCCCAATGCAGCCGGTCAGGTTCTTCGGTGATGCTCTGGTGATGGTGCCCC-AGCGAAGAAA
584 GAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAA
* * *
18716652 AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
*
18716717 TAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
713 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * ** **
18716782 GGAAA-GAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAGGCGCAAGCCGGCGATCGGCCAA
778 -GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * ** * * *
18716846 GTCCCACTCTACGTGCTGCCAATCCTGCTGCCATAATCCTTGGTTTGGTCCGAT
842 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
18716900 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAAC-GGGTGGGAGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCAC
** * *
18716964 TACGTTGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* **
18717029 CATCTTCATATTTCTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATATGATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
18717094 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
18717159 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGTCCCAAACTTGGTAGACGTGA
261 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * ** * *
18717224 TCCTTGTATTTTCTTTGGGATGGTCATAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
18717289 TGACCATTTGAAAAACGTGTCCCCA-TTCTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
18717353 AATCTTAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
18717418 AAGGGCCAAGTACTAGCACCCATTGTACATCATGTGCGCACACCCCCTGGTCCCCCTGATCG-CT
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTC-
* ** * *
18717482 GGAACCCCAATGCCG-TCGGTCAGTTTCTTTGGTGATGCTCC-AGCGATGGTACCCCGACGAAGA
583 GGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGA
* * * *
18717545 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
18717610 CTTAGACTGGGAATGGACTTCATATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * ** *
18717675 ATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGACGGGCGGGATGCGCAAGTTGGGGATCGACCG
776 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * * *
18717740 GGTCCCCCTCTGCGTGTTGCCGATCCTACTACCACAACCCTTGATCCGGTCTGAT
841 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
** * *
18717795 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGGCGAAACGAGC-GGGCGAGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCAC
* * * *
18717859 TACGCCGGCCAGAGAGACAGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAAGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
18717924 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18717989 AGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTCAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * ** *
18718054 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTCACCCCAAACTTAGTAGACGTGA
261 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18718119 TCCTTGTATTTTTTTTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGATTTT
326 TCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18718184 GTGACCATTCGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18718249 AATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
**
18718314 AAGGGCCAAGTACCAGCACCCATTACACATCATGTGCGCACACACCCCTCGGACCCCCCGATCGT
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGG-CCCCCCGATCGT
* * * * *
18718379 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCTGACGAAGAA
582 CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * **
18718444 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCAGTCCAATC
647 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* * * * *
18718509 TTAGGCTGGGAACGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACGCA
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
18718574 TGAAACGAGCGAGTGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCGTAAGTCGGGGATCGACCGG
777 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* ** * * ** * ** *
18718639 GTCCCTCTCTATGTGCTGTCGATCTTATTGTCGCAACCCTCAATCTGATCC-AGT
842 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGA-T
* * *
18718693 CATAGACTGGGAACGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGCGGGTGGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG--GC----GGGC
** * *
18718758 GGGCACTACGTAGGCCAGAGAGGCGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
60 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
18718823 TAGGCACTTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCACTGGT
125 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18718888 CCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCATTTTCTGTTTTTCATGATTTTTGA
190 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * **
18718953 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAG-GTTTTGGCCATAAACTTGGTAG
255 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
18719017 ACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
320 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
18719081 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTATTGGCTACTGGCAGCAAACG
385 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
18719146 TGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
18719211 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAT-TGCGCACACCCCCCGGCCCCACCGA
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATC-ATGTGCGCACACCCCCCGGCCCC-CCGA
** * * * ** *
18719275 TCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCTAGCGATACTCCGGCAATGGTGCCTTGGCG
578 TCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * ** * **
18719339 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCATCATGTGCTGCCATAACCCTCCGTCCTATC
642 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * **
18719404 TGATATTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATACACCTAAGTCA
707 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** *
18719469 ACCCATGAAACGAGCGTGC-GGTGCTCAGCCGGCCAGAGGAGCAAGATGCGCAAGCCGAGGATCG
772 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * ** ** ** * * * *
18719533 GCCAGGTCCCCCTCTATGTGCTATCGATCCAACTGCTGCAGCCCTCGGTCCGGTCTGAT
837 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
*
18719592 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--GGC--G-G-G
* * * *
18719657 CGGGCAATACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATAGATAGGGTGGTATGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** *
18719722 TTAGGTGCATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
18719787 TCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCA
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * * **
18719852 AAAGTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTCAGAAGTATTTTTTACCCCAAACTTGGTA
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18719917 GTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAGCTCAAAGTGTACAA
319 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18719982 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18720047 CTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
18720112 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGCCCCCCG
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCG
* * * * *
18720177 ATCGTCGAAACCCCAATGCTGCCGTTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGAC
577 ATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGAC
* * * * * *
18720241 GAAGAAAAATGCGGCACTAGCACATGCCCAAGCCCAGAATTTGCTGTCGTAA-CC-C--T-C-G-
641 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
18720299 --G----T---CT--G-AT----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
706 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
18720345 AACCCACGAAACGAGCGTGCGGGCGCTTAACCAGCCAGAGGAGCAGGATGCACAAGTCGGGGATC
771 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * * * * * * *
18720410 GA-CTGATTCCTCTTTTGCGTGCTACCGATCCTACTACCGTAACCCTCGGTCTGGTCCAAT
836 GATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * *
18720470 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGCTAACCGATGAAACGAGC-GGGCGGGCGGGCCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGC-GG--G
*
18720534 ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
63 -CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
18720599 GGCACATCTTCATATTTCTACGTTCC-A--CCATTTTTATGGCTTGTAAATTCATACAATGGTCC
127 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
18720661 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
192 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * ** * *
18720726 CTTTTTGCAGTTCGTGATTTTTTTAAATTTTTTCAGAAGGATTTTTGTTCCCAAACCTGGTAGAT
257 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
18720791 GTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18720856 TTTGTGAACATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * **
18720921 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGTGGGAAAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
18720986 TATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
517 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCG
*
18721051 TCGGAACCCCAATGCCG-TCGGTCAGGTTCT-C--CGA---T-----GATGGTGCCCCGATGAAG
581 TCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
** * * * * *
18721104 AAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGGTCAGGTCCGA
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
* * *
18721169 TCTTAGACTAGGAATGAACTTCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
710 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * * *
18721234 CACAAAATGAACGTGCGGGCACTCAGTCGACCAGAGGGGCGGGACGCGCAAGTCGGTGATCGGTC
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * **
18721299 GGGTCCCTCTCTGCGTGCTGTCGATCTTGATGCCATAACCCTCGGTC---T--GAT
840 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* *
18721350 CCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-GGGCGGG
*
18721415 CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18721480 TTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18721545 TCCCTTGAGCCTTCACATGAAGTTTCTTGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTA
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
18721610 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTA
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18721675 GACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAA
319 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * * *
18721740 TATTTTGTGACCTTTTGAAAAAATTGTCTCCATTTTAGACACTGTAATGGCTACTGGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
18721805 CTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGAGTTC-CCAGGTTTGATGAGGGATACGGGGA
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * **
18721869 TATTATATGGGCTAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTTGAT
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * **
18721934 CGTCGGAACCCCAATGCCGCCT-GCCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCTCGGTGA
579 CGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * * * **** *
18721998 AGAAAAATACGGCACCAGCATATGCCCGAGCCCAGCAAGTGCTGCCGTAACCCTCGGTGAAATCC
643 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * * *
18722063 GATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTCCATCTACCTAAGTCAA
708 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * ** *
18722128 CCCACGAAACGAGTGCGCGGGGGCTCAGTCGGCCTGAAAGGCGGGATGTGCAAGCCGGGGATCGA
773 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * ** * * * *
18722193 CCGGGTCCCCCTCTGCATGCTGTTGATCCTGTTTTCGTAACCCTCAGTC-CGTCTGAT
838 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * *
18722250 CTTAGACTTGGAATGAACTCCGTATGCTTAAGCCAACTGATGAACCGAGCGGGAGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGGCGGGCGGG
* *
18722315 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-A-AGGGTGGTAGCTGTGTTTAG
63 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18722378 GCACATCTTCAAATTTATGCATGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCC
128 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
18722443 TTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCATGATTTTTAAAAC
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
18722508 TTTTTACGGTTCAGGATTTTTAAAAATTTTTTTTGGATGGAGTCTTGGCCCCAAACTTGGTAGAC
258 TTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
18722573 ATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCCAAAAAATCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* **
18722638 TTTGTGACCATTTGAAAAAAATGTCTTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
18722703 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGTGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
18722768 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTGCCCGGCCCCCCGATCG
517 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCG
* * ** *
18722833 AT-GGAACCCTAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGATGATGGTGCCCCGACGAAG
581 -TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* ** * **
18722897 AAAAATGCAGCACTTGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTTGGTCTGA
645 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
*
18722962 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCCGTATGCCTAAGTCAACC
710 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
18723027 CACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGATC
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * *
18723092 GGGTCCCCCTTTGCGTGCTGTCGATCCTGTTGCCGCCACCCTCGGTCTGGTTCC-AT
840 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCCGAT
* * *
18723148 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTGGGAGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GCG-GGGCGGGCGGG
*
18723213 CACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
63 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18723278 GCACATCTTCATATTTTTGCATGCC-A--CCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
128 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
18723340 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
** * * * * *
18723405 TTTTTATGGCTCGTGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACA
258 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
18723470 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAATTCGAAGTGTGCAAGATT
323 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
18723535 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGTAAACCTAT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
18723600 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
18723665 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGTGCTCACCCCCATGGCCCCCTCGATCG
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC-CGATCG
* *
18723730 TCGAAACCCCAATGCTGCTGGTCAGGTTCTCCGGCGA---T--G-C-----T---CCGACGAAGA
581 TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * *
18723781 AAAATGTGGCACCAGCACATTCCCAAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCCGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
18723846 CTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACAC
711 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
18723911 ATGAAACGAGTGTGTGGGCACTCAGCCAGCCAGACGGGCGGGATGCGCAAGCAGAGGATCGATCG
776 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
18723976 GGTCCCGCTCT-AGTGCTGCCGATCCTGCTGTCACAACCCTTGGTCCGGTCTGAT
841 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* ** *
18724030 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAGTCGATGAAACGAGCAGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--GGCGGGC---
*
18724095 TGGGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
60 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * *
18724160 TTAGGCACATCTTCATATTTCTGTGTGCCAATACTATTTTTATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18724225 TCCCTTAAGCCTTCACGTGAAGTTTCACGACAAGACGACTCGTTTTTTATTTTTCACGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * *
18724290 AAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCTAAACTTGGTA
254 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
** *
18724355 GATC-TGATCCTTGTATTTTTTTTTTCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
319 GA-CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18724419 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
383 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18724484 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATCGGGGG
448 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
18724549 CCAATATAAGGGCCAGGTACTAGCACCCATCGCACATCATGTGCGCACAGCCCCCTGGCCCCGTC
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CC
* * * **
18724614 GATCGCCGGAACCCTAATGCCGCTGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGGT
576 GATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * *
18724679 GAAGAGAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
641 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
18724744 CTGATCTCAGATTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTC
706 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * **
18724809 AACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAAAGGGGTAGGATGCGCAAGCCGGGGATC
771 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * * *
18724874 AACCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTTGGTCCGGTCCAAT
836 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
18724934 CTTAGACTGGGAATGAACTCTGCATGCCTAAGACAACCGACGAAACGAGC-GTGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCAC
* * * *
18724998 TCCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTTGGTGGGTTTAGGTA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18725063 CATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18725128 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTCAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * ** * * *
18725193 TTACGGTTCGGGATTGTTTAAAATTTTTTCATAAAGAGTTTCGACCCCAAACTTGGTAGACGTGA
261 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18725258 TCCTTGTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
18725323 TGTCCA-TTGAATAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
18725387 ATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCAAGGTTTCATGAGGGATA-GGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
18725451 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGCCCCCCCGATCGCC
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GG-CCCCCCGATCGTC
* * *
18725516 AGAACCCCAATGCCGCTGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
583 GGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * ** * **
18725581 AATGTGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGTTGCAACCCTCGATCCCATCTGATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
18725646 TAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
713 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
18725711 GAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGG
778 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* ** * **
18725776 TCCCCCTCTACGTGCTGCCGATCCTGCTGCCATAACCCTCGGTCTGATCTAAT
843 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
18725829 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A--A--C--G-A-GC-GG
18725894 CAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
53 --GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
18725959 AGGTTGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCA
116 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
18726024 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAGGACGACTCGTTTTTTATTTTTCAT
181 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
18726089 TATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
246 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
18726154 AACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGA
310 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
18726219 AGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACGG
375 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18726284 GCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-TCGAGG
440 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-GAGG
* * * * *
18726348 GATACGGGGCTAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCACACA-CCCCCA
504 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
18726412 GCCCCCCGATCGTCGGAACCTCAATG-CG-TCGGTCATGTTCT----C--TGGT---A--ATGGT
569 GCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* * * * * * *
18726464 GCCCCGGCGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGAATGTGCTGTCGTAACCCTT
633 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
18726529 GGACTGGT-TCGATCTTAGACTGGGAATGAACT-CGCATGCTTAGACTGGGAATGAACTCCGTAT
698 GGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
18726592 GCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCG
762 GCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCG
18726626 GGAGGGCACT
Statistics
Matches: 13203, Mismatches: 1611, Indels: 590
0.86 0.10 0.04
Matches are distributed among these distances:
859 58 0.00
860 2 0.00
861 1 0.00
863 1 0.00
864 1 0.00
865 1 0.00
867 3 0.00
868 1 0.00
869 5 0.00
870 42 0.00
871 375 0.03
872 2 0.00
873 2 0.00
874 82 0.01
875 34 0.00
876 4 0.00
877 52 0.00
878 128 0.01
879 302 0.02
880 135 0.01
881 117 0.01
882 85 0.01
883 189 0.01
884 285 0.02
885 165 0.01
886 935 0.07
887 1060 0.08
888 14 0.00
889 426 0.03
890 8 0.00
891 211 0.02
892 51 0.00
893 19 0.00
894 238 0.02
895 1758 0.13
896 1322 0.10
897 773 0.06
898 517 0.04
899 141 0.01
900 501 0.04
901 388 0.03
902 608 0.05
903 309 0.02
904 120 0.01
905 249 0.02
906 163 0.01
907 5 0.00
908 4 0.00
909 12 0.00
910 24 0.00
911 209 0.02
912 118 0.01
913 103 0.01
914 51 0.00
915 2 0.00
917 3 0.00
919 1 0.00
920 2 0.00
921 195 0.01
922 2 0.00
923 2 0.00
924 2 0.00
925 1 0.00
927 1 0.00
928 1 0.00
929 2 0.00
931 45 0.00
932 265 0.02
933 270 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:18725680 original size:26 final size:26
Alignment explanation
Indices: 18725644--18725696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18725634 CCCATCTGAT
*
18725644 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18725670 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18725696 C
1 C
18725697 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18725890 original size:8 final size:8
Alignment explanation
Indices: 18725877--18725902 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
18725867 GACGAAATGA
18725877 GCAGGCGG
1 GCAGGCGG
18725885 GCAGGCGG
1 GCAGGCGG
18725893 GCAGGCGG
1 GCAGGCGG
18725901 GC
1 GC
18725903 GGGCACTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.27, G:0.62, T:0.00
Consensus pattern (8 bp):
GCAGGCGG
Found at i:18727316 original size:26 final size:26
Alignment explanation
Indices: 18727280--18727331 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18727270 CCGATCCGAT
* *
18727280 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
18727306 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
18727332 TCTGAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:18728946 original size:26 final size:26
Alignment explanation
Indices: 18728907--18728958 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18728897 TCTGATTCGA
* *
18728907 TCTTAGATTGGGAATGAACTCCGTAT
1 TCTTAAATTGGGAATCAACTCCGTAT
* *
18728933 TCTTAAATTTGGAATCAACTTCGTAT
1 TCTTAAATTGGGAATCAACTCCGTAT
18728959 GTCTAAGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (26 bp):
TCTTAAATTGGGAATCAACTCCGTAT
Found at i:18730655 original size:867 final size:878
Alignment explanation
Indices: 18729402--18731394 Score: 2458
Period size: 901 Copynumber: 2.3 Consensus size: 878
18729392 GAGTTTTTTC
* * *
18729402 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA-TGTGAAGTGTACAAGGTTTTGTGACC
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAAGATTTTGTGACC
* * * *
18729466 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAAGGGCTACTGGCAGCAAACTTGTAAAATCTT
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18729531 AAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAGGGC
130 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGC
* * *
18729596 CAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCTGACCCCCCCGATCGTCGAAACCC
193 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCACCCCCCCGATCGCCGAAACCC
* * * *
18729661 TAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCTGCGATGGTACCCAGATGAAGAAAAGTGCGG
258 CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTACCCAGA-GAAGAAAAATGCGA
*
18729726 CACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTTGGTCCGGTCGA-T--TT-T-A-
322 CACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCGGTCGATTACTTATAAC
* * * * *
18729785 G-A-C-T-AC-GAATGAACTCCGTTTGCCTAAGTCAACCCACGAAAGGAGCATGCGATCACTCAG
387 GTAGCTTAACGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGAGCACTCAA
* * *
18729845 TCGGCCAGAGAGG-CGGGATGCGCAAGCC-AGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCGA
452 CCGGCCAGAG-GGACGGGATGCGCAAGCCGA-GGATCGATCGAGTCCCCCTCTGCATGCTGCCGA
* *
18729908 TCCTGCTG-TCATAACCCTCGG-AATGGTCCAATCTTGGACTAGGAATGAACTCCGTATGCCTAA
515 TCCTGCTGCTC--AACCCTCGGTAAT-ATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * *
18729971 GCCAACCAACGAAATGAGCAGGC-A-GGC-GAGCA-TTACGCCGGCTATAGAGACGGGATGTGCA
577 GCCAACCAACGAAATGAGCAGGCGACGGCGGAGCACTT-CGCCGGCCAGAGAGACGGGATGCGCA
18730032 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
641 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
18730097 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTTATGGCAAGA
706 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCTATGGCAAGA
** * * *** * *
18730162 CAACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTCCAGTTTGGGTTTTTTTAAAATTTTT
771 CAACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTT
* * * * *
18730227 TCGGTAGGGGTTTTGGCCCCAAACTTGGTAGACGTGA-TCATG
836 TCGGAAAGAGTTTTGGCCCCAAACTTGCTAGACGTGACCCATG
* ** * * *
18730269 TATTTTTTTTGGTGTGCACAAAAAATTTCAAG-TAAAAACTCGAAGTGTACAAGATTTGGTGGCC
1 TATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
18730333 ATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTC
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
18730398 AAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGC
130 AAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGC
*
18730463 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CAGCCCCCCGATCGCC-AGAACC
193 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCACCCCCCCGATCGCCGA-AACC
* * *
18730526 CCAATGCCG-CTGGTCAGGTTCTCCGGCT-ATGCTCCGGTGATGGTGCCTCGGCA-AAGAAAAAT
257 CCAATGCCGTC-GGTCAGGTTCTCCGG-TGATGCTCCGGCGATGGTACC-CAG-AGAAGAAAAAT
* * * * *
18730588 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTTGGTCTGATTTGATCTTAG
318 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCG-GTCGA--TT--
18730653 ACTTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
378 AC-TT--AT-AA---CGTA-GCTTA-AC--GGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
* * * *
18730718 ACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGATCGGGTCC
432 ACGAGCATGCGAGCACTCAACCGGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGATCGAGTCC
* * ** * *
18730783 CCCTCTGCATGTTGCTGATCCTGCTGCTGCAACCCTCGGTCCTATCCGATCTTAGACTGGGAATG
497 CCCTCTGCATGCTGCCGATCCTGCTGCT-CAACCCTCGGTAATATCCAATCTTAGACTAGGAATG
* * *
18730848 AACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGACGGGCGGGTGGGCACTTCGCCGG
561 AACTCCGTATGCCTAAGCCAACCAACGAAATGAGCAGGC-GAC-GGC--G-GAGCACTTCGCCGG
*
18730913 CCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
621 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *** *
18730978 TATTTGTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCA
686 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** * ** *
18731043 CGTGAAGTTCTATGGCAAGATGACTCGTTTTCCATTTTTCACGGTTTTTGAAACTTTTTACGGTT
751 CGTGAAGTTCTATGGCAAGACAACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTACAGTT
* * * * *
18731108 CAAGATGTTTTAAAGTTTTTTCGGAAATAGTTTTGGTCCCAAACTTGCTAGATGTGACCCTTG
816 CAAGATGTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGCTAGACGTGACCCATG
*
18731171 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
18731236 CTTGAAAAAAGTATCCCCATGTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTACCAAATCT
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA--AAATCT
** * *
18731301 CAAAATGCTCTTTAAGTTGTGTGAGTTCTCGAGGTTTGATGAGGTATA-GGAGCCAATATAAGGC
129 C-AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGC
18731365 CAAGTACCAGCACCCATCGCACATTCATGT
193 CAAGTACCAGCACCCATCGCACA-TCATGT
18731395 CGTCTCGCCG
Statistics
Matches: 957, Mismatches: 114, Indels: 74
0.84 0.10 0.06
Matches are distributed among these distances:
865 2 0.00
866 116 0.12
867 210 0.22
868 4 0.00
870 1 0.00
875 2 0.00
878 1 0.00
880 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
888 1 0.00
890 2 0.00
892 2 0.00
893 170 0.18
894 3 0.00
895 2 0.00
897 3 0.00
901 230 0.24
902 137 0.14
903 18 0.02
904 34 0.04
905 15 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (878 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCACCCCCCCGATCGCCGAAACCCCAA
TGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTACCCAGAGAAGAAAAATGCGACACC
AGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCGGTCGATTACTTATAACGTAG
CTTAACGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGAGCACTCAACCGG
CCAGAGGGACGGGATGCGCAAGCCGAGGATCGATCGAGTCCCCCTCTGCATGCTGCCGATCCTGC
TGCTCAACCCTCGGTAATATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAA
CGAAATGAGCAGGCGACGGCGGAGCACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCTATGGCAAGACAACTCGTTT
TCCATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTCGGAAAGAG
TTTTGGCCCCAAACTTGCTAGACGTGACCCATG
Found at i:18730687 original size:26 final size:26
Alignment explanation
Indices: 18730648--18730700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18730638 CTGATTTGAT
**
18730648 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18730674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18730700 C
1 C
18730701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18732574 original size:26 final size:26
Alignment explanation
Indices: 18732540--18732591 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18732530 TTTTCTGTTT
* *
18732540 TTCATGATTTTTGAAACTTTTTACGA
1 TTCAGGATTTTTGAAAATTTTTACGA
*
18732566 TTCAGGATTTTTTAAAATTTTTACGA
1 TTCAGGATTTTTGAAAATTTTTACGA
18732592 AATGAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAATTTTTACGA
Found at i:18733653 original size:877 final size:869
Alignment explanation
Indices: 18731578--18734749 Score: 3874
Period size: 880 Copynumber: 3.7 Consensus size: 869
18731568 TTAAGGCAAT
* *
18731578 TCTTCATATTTCTGCATGCCAA-GCCATTTTTATGGCTTGTAAATTC--ACAATGGTCCCTTAAG
1 TCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18731640 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
66 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * **
18731705 GCG-GTCTGGGATTTTTTTAAA-TTTT------TTTC-GG-----AA----G--GA-T-TTTTTT
131 GCGTTTC-AGGATTTTTTAAAATTTTTCAAAGATTTCTGGCCCCAAACTTGGTAGAGTGATCCTT
* * *
18731748 CTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACC
195 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
18731813 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACTTGTAAAATCTT
260 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
18731878 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAGGGC
325 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGC
18731943 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGACCCCCCCGATCATCGAAAC
389 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGACCCCCCCGATCATCGAAAC
* * * * * *
18732008 CCTAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCTGCAATGGTGCCCAGATGAAGAAAAGTGC
453 CCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATAC
*
18732073 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGATT-TTAGA
517 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCG-TTCTTAGA
* * * * * *
18732137 CTGCGAATGAACTTCGTTTGCCTAAGTCAACACATGAAAGGAGCGTGCGGTCACTT-AGTCGGCC
581 CTGGGAATGAA-TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTC-GTTCAGCCGGCC
* * * *
18732201 AGAGGGGCGGGATGCGCAAGCCAGGGATCGACTGGGTCCCCTTCTGCATGCTGCCGATCCTGCTG
644 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCTTCTACGTGCTGCCGATCCTGCTG
* * *
18732266 TTGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
709 TCGCAACCCTCAGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGAC
* * * * **
18732331 GAAATGAACGGGCGGGCGGGCGGGCGGACGGGCACTACATCA-GCCAGAGAGACGAAATGCGCAA
772 GAAACGAACGGGCGGGCGGACGGGC--A--GGCAATAC-GCAGGCCAGAGAGACGGGATGCGCAA
* *
18732395 GCCGTGGATCGATAAGGTGGTATGTGGGTTTAGGCACA
832 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18732433 TCTTCATATTTCTACGTGCCAA-T-GATATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 TCTTCATATTTCTGCGTGCCAATTCCAT-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18732496 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTGTTTTTCATGATTTTTGAAACTTTT
65 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
18732561 TACGATTCAGGATTTTTTAAAATTTTTACGAAATGAGTTT-TGGCCCCAATCTTGGTAGATGTGA
130 TGCGTTTCAGGATTTTTTAAAATTTTT-C-AAA-GA-TTTCTGGCCCCAAACTTGGTAGA-GTGA
* * * *
18732625 TCCTTGTATATTTT-TTGGCACGCACAAAGAAATTCAACTAAAAACTCGAGGTGTACAAGATTTT
190 TCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18732689 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAA
254 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
18732754 AATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGTGGGATAGCGGGCCAATAT
319 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATAT
* * * * *
18732819 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGGACACCCCCCCG-GCCCCCTGATCGTC
383 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCATC
* * * **
18732883 GGAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
448 GAAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGACGAAGAAA
* * * * * *
18732948 AATGCAGCTCCAGAACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGATCCGGTCCGTTCT
512 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGTTCT
* * * *
18733013 TTGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGATCGTTCAGCCG
577 TAGACTGGGAATGAA-TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGTTCAGCCG
* *
18733078 GCCAGAGTGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCCTG
641 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCTTCTACGTGCTGCCGATCCTG
* *
18733143 CTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
706 CTGTCGCAACCCTCAGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C
* *
18733208 GACGAAACGAACGGGCAGGTGGACGGGCAGGCAATACGCAGGCCAGAGAGACGGGATGCGCAAGC
769 GACGAAACGAACGGGCGGGCGGACGGGCAGGCAATACGCAGGCCAGAGAGACGGGATGCGCAAGC
* *
18733273 CGTGGATCAATAGGGTGGTAGGCGGGTTTAGGCACA
834 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18733309 TCTTCATATATCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAG
1 TCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * **
18733374 CCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
66 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
*
18733439 GCCTTTCAGGATTTTTTAAAATTTTTCCACAACGATTTCTGGCCCCAAACTTGGTAGACGTGATC
131 GCGTTTCAGGATTTTTTAAAATTTTT-CA-AA-GATTTCTGGCCCCAAACTTGGTAGA-GTGATC
* *
18733504 CTTGTATTTTTGTTGGCATGCGCAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
192 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
18733569 ACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGTAGCAAACCTGTAAAAT
257 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
18733634 CTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGG
322 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGG
* * * * * *
18733699 GCCAAGTACCAGCACCCATTGCACATCATGTGCACACA-CCCCCTGGCCCCCCCGATCACCGGAA
387 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCATCGAAA
* * ** * **
18733763 CCCTAATGCTGCCGGTTATATTCT-C-G-GA-------CGATGGTACGTCGACGAAGAAAAATAC
452 CCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATAC
* * ** *
18733818 GGCACCAGCACATGCCCGACCCCAGCATGTGCTGCCGCAATCCTTGGTCCGGTCCAATCTTAGAT
517 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGTTCTTAGAC
* * * * *
18733883 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAG
582 TGGGAATGAATTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGTTCAGCCGGCCAG
* * * * * * * *
18733948 AGGGGTGGGATGCACAAGCTGGGGATCGGTTGGGTCCCCCTCTACGTGTTGCCAATCCTGCTGCC
646 AGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTC
* * * *
18734013 GCAACCCTCTGTGCGGTCCGATCTTAGAATGGAAATGAACTCCGTATGCCTAAGCCAACTGAAGA
711 GCAACCCTCAGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGA
* **
18734078 AAC-AAGCGGGCGGGCGGATGGGTGGGCGAGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAG
774 AACGAA-CGGGCGGGCGGACGGGCAGGC-A--A-TACG-CAGGCCAGAGAGACGGGATGCGCAAG
*
18734141 CCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACA
833 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18734178 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
1 TCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18734243 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
66 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
**
18734308 GCGGTTT-AGGATTTTTTTAAAA--TTT------TTTC-GG-----AA----G--GAGT--TTTT
131 GC-GTTTCAGGA-TTTTTTAAAATTTTTCAAAGATTTCTGGCCCCAAACTTGGTAGAGTGATCCT
* *
18734350 TCTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
194 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18734415 CATTTGAAAAAA-TAGTCCCCCTTTCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATC
259 CATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * ** *
18734479 TCAAATGCTCTTTAAGGGGGTGTCAGTTCTCTAGGTTTGATGACTGATAGGGAGCCATTATAAGG
323 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGG
** * * *
18734544 GCCAAGTACCAAAACCCATCTCACATCATGTGCTCACACCCCCCCGACCCCCCTCGATCGTCGAA
387 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCC-CGATCATCGAA
* * * * * * *
18734609 ACCCCATTACCGTCGGTCAGGTTCTTCGATGATGCTCCAGCGATGGTGCTCCGACGAAGAAAAAT
451 ACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAT
* * * * * * *
18734674 ATGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAG
515 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGTTCTTAG
*
18734739 ACTAGGAATGA
580 ACTGGGAATGA
18734750 TCTCGGGCGA
Statistics
Matches: 2010, Mismatches: 239, Indels: 133
0.84 0.10 0.06
Matches are distributed among these distances:
843 1 0.00
844 166 0.08
845 44 0.02
846 14 0.01
847 27 0.01
848 1 0.00
849 1 0.00
850 2 0.00
853 2 0.00
854 2 0.00
855 39 0.02
857 92 0.05
858 95 0.05
859 4 0.00
864 5 0.00
865 258 0.13
866 2 0.00
868 9 0.00
869 189 0.09
870 14 0.01
873 3 0.00
874 1 0.00
875 9 0.00
876 170 0.08
877 312 0.16
878 3 0.00
879 7 0.00
880 314 0.16
881 6 0.00
882 214 0.11
883 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (869 bp):
TCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
GCGTTTCAGGATTTTTTAAAATTTTTCAAAGATTTCTGGCCCCAAACTTGGTAGAGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCATCGAAACCCT
AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGTTCTTAGACTGGG
AATGAATTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGTTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTCGCAAC
CCTCAGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAAC
GGGCGGGCGGACGGGCAGGCAATACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACA
Found at i:18736445 original size:871 final size:869
Alignment explanation
Indices: 18734753--18739903 Score: 6166
Period size: 871 Copynumber: 5.8 Consensus size: 869
18734743 GGAATGATCT
* *
18734753 CGGGCGAGCATC-ACGCCGGCCAGAGAGACGGGATGCGCATGCCGTGGATCGAAGGGGTGGTAGG
1 CGGGCGGGCATCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAGGGGTGGTAGG
* *
18734817 TGCGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCACAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACAC
*
18734882 AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * *
18734947 TTTCAAAACCTTTTGCGGTTCGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACT
196 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACA
* ** * *
18735012 TGGTAGACGTGATCCTTGTATGTTTGTTTTCATGGA-AAAAAAATTCAGCTAAAAACTTGAAGTG
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
18735076 TACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18735141 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
18735206 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCACCCGCTGCC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCC
*
18735271 CCCCCGATCGCAGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGTCGATGGTGCC
519 CCCCCGATCGC-GGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGTCGATGGTGCC
* * *
18735336 CTGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
583 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
18735401 CCAGTCCGATCTTAGACTGGGAGA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
648 CCAGTCCGATCTTAGACTGGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * *
18735465 GAGCACTCAGCTGGCCAGAGGGACGAGATGCGCAAGCCAGGGATCGGTCGAGTCACCCTCTGTGT
713 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCACCCTCTATGT
* * ** *
18735530 GCTGCCGATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACCGGGAATGAACTCCGTAT
777 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18735595 ACCTAAGCCAACCAATGAAACGAGCGGG
842 GCCTAAGCCAACCGACGAAACGAGCGGG
* *
18735623 CGGGCGGGCATC-ACGCCGGCCAGAGAGACGGGATGCGTATGCCGTGGATCGAAGGGGTGGTAGG
1 CGGGCGGGCATCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAGGGGTGGTAGG
*
18735687 TGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCACAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACAC
* *
18735752 ATTGGACCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
18735817 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACA
196 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACA
* * * * *
18735882 TGGTAGATGTGATGCATGTATTTTTGCTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
18735947 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* **
18736012 CAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
18736077 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCACCCGCTGCC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCC
*
18736142 CCCCCGATCGCAGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGTCGATGGTGCC
519 CCCCCGATCGC-GGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGTCGATGGTGCC
* *
18736207 CCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
583 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
18736272 CCAGTCCGATCTTAGACTGGGAGA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
648 CCAGTCCGATCTTAGACTGGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
18736336 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAACGGTCGGGTCACCCTCTGTGT
713 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCACCCTCTATGT
* ** * * * *
18736401 GCTGCCGATCCTACTATCACAACACTCGGTCCGATATGATCTTAGACCGAGAATGAACTCCGTAT
777 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
18736466 ACCTAAGCCAACCAACGAAACGAGCGGGTGGG
842 GCCTAAGCCAACCGACGAAACGAGC----GGG
* * * * * *
18736498 CGGGCGGGCGAGCATCACGTCGACCAGAGAGACGGGATGCGCATGTCGTGGATCGATGGGGTGGT
1 CGGGCGGGC-ATC-T-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAGGGGTGGT
**
18736563 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
63 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18736628 CACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCAC
128 CACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * *
18736693 GATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
193 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* ** *
18736758 ACTTGGTAGACGTGATCCTTGTATTTTT-TTTTCATGGA-AAAAAAATTCAGCTAAAAACTCGAA
258 ACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
18736821 GTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGG
323 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18736886 CAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGA
388 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
18736951 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATCATGTGCGCGCACCCCCCGGC
453 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
18737016 CCCCCCGATCGTCGAAACCCCAATGTCGCTGGTCAGGATTTCCGGCGATGCTCGGGCAATGCTCC
518 CCCCCCGATCG-CGGAACCCCAATGCCGCCGATCAGG--TT----C--T-CT--GGCGATGCTCC
* * * * *
18737081 GGCGATGGTG-CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACTTGTGCTATC
571 GTCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GC
*
18737145 GTA-AACCTCTGTCCGGTCTGATCTTACACTGGAATGAACTCCGCATGCTTAGACTGGGA-ATGA
635 -CACAACC-C--T-C-G---G----T-C-C----A-G---TCCG-AT-CTTAGACTGGGAGATGA
* * * * *
18737208 ACTCCGTATGACTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGG
675 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** * * * *
18737273 ATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCTTGCTGCCACAACCCTC
740 ATGCGCAAGCCG-GGATCGGTCGGGTCACCCTCTATGTGCTGCCGATCCTGCTGCCACAACCCTC
* * *
18737338 GGT-CTAGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGAAACGAGCG
804 GGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
18737402 GG
868 GG
* * * *
18737404 CGGACGAGCGGGCGAGCACTACGTCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GG
1 C-G--G-GCGGGC-A--TCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-AGGG
* * *
18737468 GTGGTAGGTGGGTTTAGGTACATCTTCGTATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAA
58 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
18737533 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
123 ATTCACACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
18737598 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
188 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * *
18737663 CCAAAACATGGTAGATGTTATCCCTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAAC
253 CCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
18737728 TCGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTAAGACACTTTGAA-GGC
318 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGC
*
18737792 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
382 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * *
18737857 CAGTGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCC
447 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** *
18737921 CCCAGGACTGCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-T--CGA-------T-G
512 CCC-GGCCCCCCCGATCG-CGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGTCG
* * * * *
18737975 A---TGCTCTGACGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAA
575 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
* *
18738037 CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCC
640 CCCTCGGTCCAGTCCGATC-T----T----A-G-A--CTG---G----G---A--GATGAACTCC
* * * ** *
18738102 GTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGTAAGAGGGGTGGGATGCG
680 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * *
18738167 TAAGCCGAGGATC-GACTGGGTC-CCACTCTACGTGCTGTCGATTCTGCTGTCACAACCCTCAGT
745 CAAGCCG-GGATCGGTC-GGGTCACC-CTCTATGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * *
18738230 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACGAGCGGCCG
807 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-C-
18738295 GGTGGG
867 ---GGG
* * * * *
18738301 CGGGCGGGCA-CAACACCGGCCAGAGAGAGGGGATACGCAAGTCGTGGATCGATA-GGGTGGTAG
1 CGGGCGGGCATCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-AGGGGTGGTAG
* ** * * **
18738364 GTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCGATGCCATTTTTATGTCTTGTAAATTCTTA
65 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACA
* *
18738429 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTGA-TTTTCACG
130 CAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACG
* * * *
18738493 ATTTTTGAAACATTTTGCGGTTTGAGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGCCCCAAA
194 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * **
18738558 CGTGGTAGACATGATCCTTGTATTTTTGTTGGCATACAC-AAAAAATTCACCTAAAAACTTAAAG
259 CATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18738622 TGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18738687 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
18738752 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * * * * *
18738817 ACCCCGATCATCGAAACCCCAATGTCACCGGTCAGGTTCT-TCGACGATGCTCCGACAATGGTGC
519 CCCCCGATC-GCGGAACCCCAATGCCGCCGATCAGGTTCTCT-GGCGATGCTCCGTCGATGGTGC
** ** * * **
18738881 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCGTAACCCTCGG
582 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
*
18738946 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
647 TCCAGTCCGATC-T----T----A-G-ACT--G---G----GA----G-ATGAACTCCGTATGCC
* * * * * * * *
18739011 TAAGTCAACCAACGAAACGAGCGTGCGAGCGCTCAACCGGTCGGAGGGGTGGGATGCACAAGACG
687 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CC
* * ** * *
18739076 GGGATCGATCGGGTCCCCCTCTATGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCGGTCTTA
751 GGGATCGGTCGGGTCACCCTCTATGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGA
* * * *
18739141 TCTTAGATTGGCAATGAAC-CTGTATGCCTAAGCCGACCGACGAAACGAGCAGGCGGG
816 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGG
* *
18739198 CGAGCGGACGGGCA-CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAAGGGTGG
1 C--G-GG-CGGGCATCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAGGGGTGG
* * *
18739262 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGCCTTGTTAATTC
62 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
18739327 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCA
127 ACACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
18739391 CGATTTTTGAAACTATTTGCGGTTCAAGATTTTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCA
192 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
18739455 AAC----TAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGA
257 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
18739516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTG
322 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
18739581 GCGGCGAAA-CTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
387 GCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * **
18739645 GATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTTTGCACACCCCCCC
451 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * * * * ** *
18739710 GGCTCCCCTGATCATCGGAACTCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGG
515 GGCCCCCCCGATC-GCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGTCGATGG
* * * * * * * *
18739775 TGCCCCGATGAATAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATTTGCCGTCGCAACCGT
579 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
* * * *
18739840 CGATCC-GATCCGATCTT-GACTGGGA-ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
644 CGGTCCAG-TCCGATCTTAGACTGGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
18739902 CG
708 CG
18739904 GGGGCGGGCA
Statistics
Matches: 3774, Mismatches: 368, Indels: 278
0.85 0.08 0.06
Matches are distributed among these distances:
863 1 0.00
864 3 0.00
865 3 0.00
868 2 0.00
870 308 0.08
871 545 0.14
872 1 0.00
873 2 0.00
874 2 0.00
875 46 0.01
876 11 0.00
877 205 0.05
878 6 0.00
879 252 0.07
880 1 0.00
881 1 0.00
882 1 0.00
883 4 0.00
884 3 0.00
885 49 0.01
886 28 0.01
887 10 0.00
888 225 0.06
889 477 0.13
890 5 0.00
891 4 0.00
892 3 0.00
893 7 0.00
894 2 0.00
895 31 0.01
896 194 0.05
897 137 0.04
898 3 0.00
899 31 0.01
900 46 0.01
901 191 0.05
902 231 0.06
903 6 0.00
904 3 0.00
905 1 0.00
906 5 0.00
907 1 0.00
908 4 0.00
909 7 0.00
910 432 0.11
911 63 0.02
912 179 0.05
913 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (869 bp):
CGGGCGGGCATCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAGGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACAC
AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACA
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGTCGATGGTGCCCCG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCA
GTCCGATCTTAGACTGGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCACCCTCTATGTGCTG
CCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGGG
Found at i:18738084 original size:26 final size:26
Alignment explanation
Indices: 18738055--18738107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18738045 CCGGTCTGAT
*
18738055 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18738081 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18738107 C
1 C
18738108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18738986 original size:26 final size:26
Alignment explanation
Indices: 18738957--18739009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18738947 CCGGTCCGAT
18738957 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18738983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18739009 C
1 C
18739010 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18741915 original size:903 final size:895
Alignment explanation
Indices: 18740030--18742351 Score: 3155
Period size: 903 Copynumber: 2.6 Consensus size: 895
18740020 GGCTTGTAAA
* * *
18740030 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTAC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGC
* * *
18740095 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGATGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTC-GAAGGATTTTTGGCCCCAAACTTGGTAGA-GTGATCCT
*
18740160 TGTATTTTTTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
129 TGTATTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
18740225 ATTTGAAAAATGTCTCCCCATTTCAGGCACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTC
193 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18740290 AAATGCTCTTTAGGGGGGTGTGAGTTCTCGAGGTTTGGTTAGGGATAGGGGGCCAATATAAGGGC
258 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGC
** * * *
18740355 CAAGTACCAGCACCCATCGGTCATCATATGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACAC
322 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAACCC
* * * *
18740420 CAATGCCACCGGTCAGGTTCTCCAGTGATGCTTCGACGATGGTGCCTCGACGAGGAAAAATGCGG
386 CAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * * *
18740485 CACCAGCACATGCTCGAGCCTAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTCA-ACT
451 CACCAGCACATGCCCGAGCCCAGCATGTGGTGTCGCAACCCTTGGTCTGGTCTGATCTT-AGACT
* * * *
18740549 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAGCG
515 -GGAATGAACTCCATATGCTTACACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * ** *
18740614 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATTGGCCGGGTCCCCC
579 AGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCGAGATAAGCAAGCCAGGGATCGGCCGGGTCCCCC
** * * * * * *
18740679 TCTACATGCTGTTAATCCTGCTGCTATAACCCTCCATCCGATCTAATTTTAGACTGGGAATGAAC
644 TCTACATGCTACTAATCCTGCTACCACAACCCTCCATCCGATCCAATCTTAAACTGGGAATGAAC
* * *
18740744 TCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCGGGCGGACGGGCACTACGCTGCCCA
709 TCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGACGGGCACTACGCCGCCCA
* * *
18740809 GAGAGACGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATT
774 GAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGAACATCATCATATT
* *
18740874 TCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
839 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCC
18740931 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGC
* *
18740996 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAGAAGATACT
66 GGTTCGGGATTTTTTAAAATTTTTTCG-AAGGATTTTTGGCCCCAAACTTGGTAGAG-TGATCCT
*
18741061 TGTATTTATGTTGGCATTCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAG-TTTTGTGAC
129 TGTATTT-TGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18741125 AATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCT
192 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18741190 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGC
257 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG-
* * * *
18741255 CCAAGTACCAGCACCCATCACACATCCTGTGCGCTCACACCCCCCGACCCCTCTGATCATCGGAA
321 CCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGACCCC-CCGATCGTCGGAA
* * *
18741320 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
383 CCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* *
18741385 CGGCACCAGCACATGCCCGAGCCCAGTATGTGGTGTCGCAACCCTTGGTCTAGTCTGATCTTAGA
448 CGGCACCAGCACATGCCCGAGCCCAGCATGTGGTGTCGCAACCCTTGGTCTGGTCTGATCTTAGA
* * *
18741450 CTGGAAATGAACTTCATTTGCTTACACTGCGAATGAACTCTGTATGCCTAAGTCAACCCACAAAA
513 CTGG-AATGAACTCCATATGCTTACACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * **
18741515 CGAGCGTGCGGGCGCTCAGTCAGCCAGAGAGGCGAGATAAGCAAGCCGGGGATCGGTTGGGTCCC
577 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCGAGATAAGCAAGCCAGGGATCGGCCGGGTCCC
* * * *** ** * *
18741580 CCTCTGCATGCTACTGATCCTGCTACCGCAACCCTTGGTTTGGTCCGATCTTAAACTGGGAATGA
642 CCTCTACATGCTACTAATCCTGCTACCACAACCCTCCATCCGATCCAATCTTAAACTGGGAATGA
* * * * * * * *
18741645 ACTCTGTATGCCTAAGCCAACCGATGAAATGAACGGGTGGGCGGGCGGGCGGGCATTACGCCGGC
707 ACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGACGGGCACTACGCCGCC
* *
18741710 CAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAAGTGGGTTTAGGAACATCTTCAT
772 CAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGAACATCATCAT
** *
18741775 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAGGCC
836 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCC
* * *
18741835 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGC
* * * * * *
18741900 GGTTCGAGA-TTTTTAAAATTTTTTC--ATGATTTTCGG--GC---CTT--CA-CGTGATCCTTG
66 GGTTCGGGATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGGTAGAGTGATCCTTG
* *
18741954 TATTTTTGTTAGCATGCACAAGGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
131 TA-TTTTGTTGGCATGCACAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
18742019 TTGGAAAAAAGTGTCCCCACTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
194 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* **
18742084 AATGCTCTTTAA-GGGGTGTGAGTTGTCTTGGTTTGATGAGGGATAGGGGGCCAATATAACGGCC
259 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCC
*
18742148 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTG-CCCCCCGATCGCCGGAACCCC
323 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAACCCC
* * * * *
18742212 AATGCAGCCGGTCAGGTTCTCCTGTGATGTTCCGACGATGGTGCCCTGACGAAGAAAAATACGGC
387 AATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *** * *
18742277 ACCAGAACATGCCCGAGCCCAGCAT-TTGCCACTGTAACCCTTAGTCTGGTCTGATCTTAGACTA
452 ACCAGCACATGCCCGAGCCCAGCATGTGGTGTC-GCAACCCTTGGTCTGGTCTGATCTTAGACT-
18742341 GGAATGAACTC
515 GGAATGAACTC
18742352 TGTATGCCTA
Statistics
Matches: 1258, Mismatches: 145, Indels: 49
0.87 0.10 0.03
Matches are distributed among these distances:
887 3 0.00
888 130 0.10
889 16 0.01
890 1 0.00
891 124 0.10
892 91 0.07
893 1 0.00
895 3 0.00
898 1 0.00
900 13 0.01
901 281 0.22
902 50 0.04
903 369 0.29
904 175 0.14
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (895 bp):
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGC
GGTTCGGGATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGGTAGAGTGATCCTTG
TATTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATG
CCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGGTGTCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGAATG
AACTCCATATGCTTACACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
GGGCGCTCAGCCAGCCAGAGAGGCGAGATAAGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACAT
GCTACTAATCCTGCTACCACAACCCTCCATCCGATCCAATCTTAAACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGACGGGCACTACGCCGCCCAGAGAGAC
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGAACATCATCATATTTCTGCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCC
Found at i:18743079 original size:26 final size:26
Alignment explanation
Indices: 18743050--18743102 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18743040 CTGGTTCGAT
*
18743050 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18743076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18743102 C
1 C
18743103 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18743953 original size:26 final size:26
Alignment explanation
Indices: 18743924--18743976 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18743914 CTGGTTCGAT
*
18743924 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18743950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18743976 C
1 C
18743977 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18744083 original size:874 final size:879
Alignment explanation
Indices: 18742384--18747915 Score: 6546
Period size: 874 Copynumber: 6.2 Consensus size: 879
18742374 AAATGAGCGA
* *
18742384 ACGGGCGGGCGGGGGCACTACG-TCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCAATAGGG
1 ACGGGCGGGC--GGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
18742448 TGGTAGGTGTGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCA-TTTTAGAGGCTTGTAA
63 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA-TGGCTTGTAA
* *
18742512 ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGCTTTT-TATT
127 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATT
* ** * * *
18742576 TTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
191 TTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGG
* *
18742641 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCA-CAAAGAAATTCAGCTAAAA
256 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAA-AAATTCAGCTAAAA
* *
18742705 ACTCAAAGTTTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
320 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
18742770 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGA
385 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGA
* *
18742835 TAAGTGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACT
449 TAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-
* * * * * *
18742900 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCAGTCAGGTTCTCTGGCAATGCTCCGA
513 CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
**
18742965 CGATGGTGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
578 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
*
18743030 AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
643 AACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
* * * *
18743095 CCGTATGCCTAAGTCAAACCACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATG
708 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * *
18743160 CGCAAGCC-AGGATCGCTAGGGTCCCCTTCTGTTTGCTGTCGATCCT-ACTA-CC-GTTACCCT-
773 CGCAAGCCGGGGATCGATAGGGTCCCCCTCTGTGTGCTGTCGATCCTCACTACCCTGTTACCCTG
* *
18743220 CG-G-TCCGTATGCCTAAGCCAACTGATGAAATGAGCGGGCGG
838 CGAGATCCGTATGCCTAAGCCAACTGACGAAACGAGC-GGCGG
* * *
18743261 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGAGTGG
1 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
18743326 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
18743391 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCGTTTTTTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
18743456 TGATTTTTGAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTCGGAAAGTGTTTTGGCCCTA
196 TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCA
* * *
18743521 AACTTGGCAGACGTGATCCTTGTATTTTT-TTGGCATGCATTAAAAAATTCAGCTAAAAACTCGA
261 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAAAAATTCAGCTAAAAACTCAA
18743585 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
326 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18743650 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATAAGTG
391 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATAAGGG
*
18743715 ATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCC
455 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC
* * * * *
18743780 GACCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCAATGCTCCGATGATGG
519 GGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
**
18743845 TGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
584 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
*
18743910 CGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
649 CGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
18743975 GCCTAAGTCAAACCC-CGAAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAA
714 GCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* *
18744039 GCC-GGGATCGATAGGGTCCCCTTCTGTGTGCTGTCGATCCT-ACTA-CC-GTCACCCT-CG-G-
778 GCCGGGGATCGATAGGGTCCCCCTCTGTGTGCTGTCGATCCTCACTACCCTGTTACCCTGCGAGA
* *
18744097 TCCGTATGCCTAAGCCAACTGACGAAATGAACGGGCGG
843 TCCGTATGCCTAAGCCAACTGACGAAACGAGC-GGCGG
* * * *
18744135 ACGGGCGGGCAGGCACTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGAGTGG
1 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
18744200 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
18744265 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT--
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
18744328 T-A------AGA--TTTTGTGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGTCCCC
196 TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCC
* * * **
18744383 AAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAATTTG
260 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAAAAATTCAGCTAAAAACTCA
* * * *
18744448 AAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCTGACACTTTAATAGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
18744513 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGG
390 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGG
18744578 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
18744642 GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAG-GATGCACCGACGATG
519 GGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG-GCGATGCTCCGACGATG
* **
18744706 GTGCCCCGAGGAAGAAAAATGCATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
583 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC
* *
18744771 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTA
647 -C--T-C-G---G-TC-----C--GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCTGTA
* * *
18744836 TGCTTAGACTGGGAATGAACTCAGAATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
687 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** ** *
18744901 GCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATTG-GCGGAGTCCCCCTCTACGTGCTGCCGA
752 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATAGG-GTCCCCCTCTGTGTGCTGTCGA
* *
18744965 TCCTGCTGCCACAACCCTTGGTCCGGT-CCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAG
816 T-C--CT--CACTACCC-T-GT----TACC---C------TGCG-A-G-A-TCCGTATGCCTAAG
* *
18745029 CCAACCGACGAAACGAGC--AGG
857 CCAACTGACGAAACGAGCGGCGG
* * *
18745050 -CGGGCGGGCGGGCACTACG-TCAGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTG
1 ACGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * *
18745113 GTTGGTGGGTTTGGGCACATCTTCAAATCTCTGCATGCCAATGACATTTTTATGGCTTGTAAATT
65 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
18745178 CATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * * *
18745243 ATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATGTTTTTTGGAAGGCGTTTTAGCCC
195 ATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT-TTTTTCGGAAAGAGTTTTGGCCC
*
18745308 CAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACT
259 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATC-AAAAAATTCAGCTAAAAACT
*
18745372 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTA
323 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** * *
18745437 CTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTTGAGTTCTCGAGGTTTGATGAG
388 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAG
* * * * *
18745502 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGCGTGCA-AACCCCC
453 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
18745566 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGACGATG
518 CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATG
* * * * *
18745631 GTGCCCCGACGAAGAAAAATACGGCACCAACAAATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
583 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
* * * *
18745696 TCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
648 TCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* *
18745761 TGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCA
713 TGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* *
18745825 AGCCAGGGATCGATTA-GGTCCCCCTCTACGTGGTGCTGATC-CTCCTGCCACAACCCTCAATCC
777 AGCCGGGGATCGA-TAGGGTCCCCCTCT--GT-GTGCTG-TCGATCCT----C-A--CT--A-CC
* ** * * * * *
18745888 GATCAGATCTTAGACTGGGAATGAACTCCGTATACCTAACCCAACCGACGAAAGGAGCGAGCGG
827 ---C---TGTTACCCTGCG-A-G-A-TCCGTATGCCTAAGCCAACTGACGAAACGAGCG-GCGG
* * * * * *
18745952 GCAGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCAATAGGGTGG
1 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
18746017 TAGGTGGGTGTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
** *
18746082 ATACAATATTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
18746147 -AATTTTTGAAACTCTTTGCGGTTT-GGATTTTTT-AAATTTTTTC-GAAACGAGTTTTGGCCCC
196 TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCC
* *
18746208 AAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAACATTCAGCAAAAAACTC
260 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAAAA-ATTCAGCTAAAAACTC
*
18746272 AAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
324 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
18746337 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAA
389 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT-AA
* *
18746402 GGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCC
452 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** * *
18746466 TCGG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGACACTCTGGCGAT
517 CCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * * * *
18746530 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG-CTAGCATCTGCTACCGCAACC
582 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
* * * ** **
18746594 CTCGGTCCAGTCCAATCTTAGACTATGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
647 CTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
18746659 ATGCTTAAGTCAACCCACGGAACGAGTGTGCAGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCA
712 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * ** * ** * *
18746724 AGCCGAGCATCGACCGGGTCCCCTTCTACGTGCT-ACGTATCCTGCTACCGCAACCCTCGATCCG
777 AGCCGGGGATCGATAGGGTCCCCCTCTGTGTGCTGTCG-ATCCT-C-A---CTA-CC-C--T--G
* *
18746788 ATTTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-G-GG
830 --TT-A-C----CCTGCG-A-G-A-TCCGTATGCCTAAGCCAACTGACGAAACGAGCGGCGG
* * * * *
18746848 -TGGGCGGGCGGGCACTACGCCGACCAAACAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
1 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* ** * *
18746912 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATTCCTTTTTTATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
18746977 ATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGATGACTCGTTGTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * **
18747042 TGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTAGAACCA
196 TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCA
* * * *
18747107 AACTTGGTAGACGTGATACTTCTTTTTTTGTTGGCATGCATCAAAAAATTCAGCTAAAAACCCGA
261 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAAAAATTCAGCTAAAAACTC-A
*
18747172 AA-TGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* **
18747236 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCCCGAGGTTTGACGAGGG
390 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
*
18747301 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CACCCCCCCG
455 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * **
18747364 G--CGCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGGGATGGT
520 GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
** * * *
18747427 GCCCCTGGGGAAGAAAAATGCGTCACTAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAA-CC-
585 GCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
*
18747490 C--T-C----AG-TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTAT
649 CGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
18747531 GCTTAAGTCAACCCACGAAACGAGTGTGAGGGCGCTCAGTCGGACAGAGGGGCAGGATGCGCAAG
714 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
18747596 CCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCCGCTGC-CGTAACCTCTGGTCTGAT
779 CCGGGGATCGATAGGGTCCCCCTCTGTGTGCTGTCGAT--C-CT-CAC-T-ACC-CT-GT-T-A-
* * *
18747660 CCAATCTTAGACTGGAAATGAACTCAGTATGCCTAAGCCAACCGACAAAACGAGCGTGCGG
833 CC---C-T-G-C--G--A-G-A-TCCGTATGCCTAAGCCAACTGACGAAACGAGCG-GCGG
* *
18747721 ACGGGCGGGCGGGCACTACGCTGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
1 ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
18747786 TAGGTGGGTTTAGGCACATCTT-AGTATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
66 TAGGTGGGTTTAGGCACATCTTCA-TATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
18747850 CATACAATGGTCCCTTAATCCTTCACATAAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
18747915 A
195 A
18747916 CGACTTTCAA
Statistics
Matches: 4103, Mismatches: 390, Indels: 327
0.85 0.08 0.07
Matches are distributed among these distances:
862 121 0.03
863 71 0.02
864 210 0.05
865 9 0.00
866 3 0.00
867 2 0.00
868 2 0.00
869 5 0.00
870 147 0.04
871 5 0.00
872 7 0.00
873 7 0.00
874 922 0.22
875 250 0.06
876 5 0.00
877 10 0.00
878 1 0.00
879 2 0.00
881 2 0.00
885 1 0.00
886 4 0.00
887 7 0.00
888 105 0.03
889 28 0.01
890 3 0.00
891 1 0.00
892 6 0.00
893 4 0.00
894 65 0.02
895 217 0.05
896 54 0.01
897 82 0.02
898 174 0.04
899 544 0.13
900 172 0.04
901 23 0.01
902 32 0.01
903 172 0.04
904 1 0.00
905 2 0.00
906 2 0.00
907 3 0.00
908 1 0.00
910 2 0.00
911 2 0.00
912 2 0.00
913 1 0.00
914 177 0.04
915 5 0.00
916 2 0.00
917 1 0.00
918 29 0.01
920 1 0.00
921 1 0.00
923 3 0.00
924 4 0.00
925 221 0.05
926 165 0.04
927 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (879 bp):
ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATCAAAAAATTCAGCTAAAAACTCAA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
GTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GGGGATCGATAGGGTCCCCCTCTGTGTGCTGTCGATCCTCACTACCCTGTTACCCTGCGAGATCC
GTATGCCTAAGCCAACTGACGAAACGAGCGGCGG
Found at i:18744864 original size:26 final size:26
Alignment explanation
Indices: 18744786--18744857 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
18744776 CCGGTCTGAT
18744786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18744812 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18744838 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
18744858 AGAATGCCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18745747 original size:26 final size:26
Alignment explanation
Indices: 18745711--18745763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18745701 CCAGTCCAAT
*
18745711 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18745737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18745763 C
1 C
18745764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18745935 original size:899 final size:897
Alignment explanation
Indices: 18744097--18747930 Score: 4890
Period size: 899 Copynumber: 4.3 Consensus size: 897
18744087 TCACCCTCGG
* * * *
18744097 TCCGTATGCCTAAGCCAACTGACGAAATGAACGGGCGGACGGGCGGGCAGGCACTACGCTAGCCA
1 TCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCGGGCGGGCACTACGC-AGCCA
* *
18744162 GAGAGACGGGATGCGCAAGCCGTAGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATAT
61 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
18744227 TTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
126 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
18744292 GAAGTTTCATGGCAAGACGACTCGTTTTCTA----T--T--TTTT-AAGA--TTTTGTGGTTCGA
191 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGA
*
18744346 GATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GTCCCCAAACTTGGTAGACGTGATCCTTGCATT
256 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTAG-CCCCAAACTTGGTAGACGTGATCCTTGTATT
* * ** *
18744410 TTTGTTGGCATGCATAAAAAAATTCAGCTAAAAATTTGAAGTCTACAAGATTTTGTGACCATTTG
320 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* * *
18744475 AAAAAAGTGTCCCAATTTCTGACACTTTAATAGCTACT-AGCAGCAAACCTGTAAAATCTCAAAT
385 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAACCTGTAAAATCTCAAAT
*
18744539 GCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
449 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
18744604 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
514 TACCAGCACCCATCGCACATCATGTGTGCAAACCCCCCGG-CCCCCCGATCGTCGAAACCCCAAT
* * **
18744669 GCCGCCGGTCAGGTTCTCCGAG-GATGCACCGACGATGGTGCCCCGAGGAAGAAAAATGCATCAC
578 GCCGCCGGTCAGGTTCTCCG-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * **
18744733 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
642 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGA
*
18744798 ATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGAAT
707 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G---TC--AA-
* *
18744863 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAG
757 -CC-----C-A--CA-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
18744928 CCGGGGATTG-GCGGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGT
812 CCGGGGATCGATCGG-GTCCCCCTCTACGTGCTGCCGATCCTCCTGCCACAACCCTCGATCCGAT
* *
18744992 CCGATCTTAGATTGGGAATGAAC
876 -CAATCTTAGACTGGGAATGAAC
* *
18745015 TCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGTCAGCCAGGGA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACG-CAGCCAGAGA
* * * * *
18745080 GACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTTGGTGGGTTTGGGCACATCTTCAAATCTCT
65 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
18745145 GCATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAG
130 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
18745210 TTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATT
* * * *
18745275 TTTTAAAATGTTTTTTGGAAGGCGTTTTAGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTG
260 TTTTAAAAT-TTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
18745340 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
324 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18745405 AAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTCT
389 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCT
*
18745470 TTAA-GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
454 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
18745534 GAACCCATCACACATCATGCGTGCAAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
519 GCACCCATCGCACATCATGTGTGCAAACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGC
* * * * *
18745599 CGGTCAAGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACAA
583 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
18745664 ATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAAC
648 ATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAAC
*
18745729 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAG-AACGAGCGTGCGG
713 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAAACGAGCGTGCGG
* * * ** *
18745793 GCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGATTAGGTCCCCCTCTACGTGG
778 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGC
* *
18745858 TGCTGATCCTCCTGCCACAACCCTCAATCCGATCAGATCTTAGACTGGGAATGAAC
843 TGCCGATCCTCCTGCCACAACCCTCGATCCGATCA-ATCTTAGACTGGGAATGAAC
* * * * *
18745914 TCCGTATACCTAACCCAACCGACGAAAGGAGCGAGCGGGCAGGCGGGCGGGCACTATGCCGGCCA
1 TCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGCGGGCACTACG-CAGCCA
* * * *
18745979 GAGAGACGGGATGCGCAAGCCGTGTATCAATAGGGTGGTAGGTGGGTGTAGGCACATGTTCATAT
61 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* **
18746044 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATATTCCCTTAAGCCTTCACGT
126 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** *
18746109 GAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AATTTTTGAAACTCTTTGCGGTTTG-
191 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGA
* * *
18746172 GATTTTTT-AAATTTTTTCGAAACGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTT
256 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
18746236 TTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGA
321 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
*
18746301 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
386 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGC
18746366 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGG-TAGGGGGCCAATATAAGGGCCAAGT
451 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGT
** * *
18746430 ACCAGCACCCATCGCACATCATGTGCACACACACCCTCGGCCCCCCGATCGTCGAAACCCCAATG
515 ACCAGCACCCATCGCACATCATGTGTGCAAAC-CCCCCGGCCCCCCGATCGTCGAAACCCCAATG
* ** * *
18746495 CCGCCGGTCAGGTTCTCCAGCGACACTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
579 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * **
18746560 GCACATGCCTGAG-CTAGCATCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTATGAAT
644 GCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAAT
* * * *
18746624 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCAC-GGAACGAGTGT
709 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAAACGAGCGT
* * * * * *
18746688 GCAGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGAGCATCGACCGGGTCCCCTTCTAC
774 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTAC
* * * * *
18746753 GTGCT-ACGTATCCTGCTACCGCAACCCTCGATCCGATTTAATCTTAGACTGGGAATGAAC
839 GTGCTGCCG-ATCCTCCTGCCACAACCCTCGATCCGA-TCAATCTTAGACTGGGAATGAAC
* * * * *
18746813 TCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGACCAAACA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCAG-CCAGAGA
18746878 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
65 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
18746943 GTGTGCCAATTCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAG
130 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * **
18747008 TTTCATGGCAAGATGACTCGTTGTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATT
195 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATT
* * ** * * *
18747073 TTTTAAAAGTTTTTCGGAAGGAGTTTTAGAACCAAACTTGGTAGACGTGATACTTCTTTTTTTGT
260 TTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18747138 TGGCATGCATC-AAAAAATTCAGCTAAAAACCCGAAA-TGTACAAGATTTTCTGACCATTTGAAA
325 TGGCATGCA-CAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAA
*
18747201 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
388 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTC
* *
18747266 TTTAA-GGGGTGTGAGTTCCCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
453 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
18747330 AGCACCCATCGCACATCATGTGTGC-ACCCCCCCGG-CGCCCGATCGTCGAAACCCCAATGCCGC
518 AGCACCCATCGCACATCATGTGTGCAAACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGC
* ** ** * *
18747393 CGGTCAGGTTCTCTGGCGATGCTCCGGGGATGGTGCCCCTGGGGAAGAAAAATGCGTCACTAGCA
583 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCA
*
18747458 CATG-CTCGAGCCCAGCATGTGCTGCCGTAA-CC-C--T-CAG-----TC-----C--GG--T--
647 CATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGA
* * *
18747501 -CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCAC-GAAACGAGTGTGA
711 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAAACGAGCGTGC
* * * * **
18747560 GGGCGCTCAGTCGGACAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGT
776 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGT
* ** * * *
18747625 GCTGCCAATCC-CGCTGCCGTAA-CCTCTGGTCTGATCCAATCTTAGACTGGAAATGAAC
841 GCTGCCGATCCTC-CTGCCACAACCCTC-GATCCGAT-CAATCTTAGACTGGGAATGAAC
* * *
18747683 TCAGTATGCCTAAGCCAACCGACAAAACGAGCGTGCGGACGGGCGGGCGGGCACTACGCTGGCCA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGC-AGCCA
* *
18747748 GAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-AGTA
61 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TA
* * *
18747812 TTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACA
125 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
18747877 TAAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGACTTTCAAAACTT
190 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
18747931 ATTTTTTTTG
Statistics
Matches: 2592, Mismatches: 276, Indels: 140
0.86 0.09 0.05
Matches are distributed among these distances:
869 5 0.00
870 173 0.07
871 3 0.00
872 1 0.00
873 3 0.00
874 188 0.07
875 1 0.00
877 1 0.00
879 1 0.00
881 1 0.00
886 2 0.00
891 3 0.00
892 1 0.00
894 65 0.03
895 215 0.08
896 44 0.02
897 83 0.03
898 177 0.07
899 539 0.21
900 178 0.07
901 20 0.01
902 22 0.01
903 180 0.07
904 1 0.00
909 2 0.00
911 2 0.00
913 2 0.00
914 179 0.07
915 1 0.00
916 2 0.00
917 2 0.00
918 24 0.01
920 3 0.00
922 4 0.00
923 3 0.00
924 1 0.00
925 288 0.11
926 170 0.07
927 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCAGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTT
TTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGTGCAAACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGC
CGATCCTCCTGCCACAACCCTCGATCCGATCAATCTTAGACTGGGAATGAAC
Found at i:18746639 original size:26 final size:26
Alignment explanation
Indices: 18746610--18746665 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18746600 CCAGTCCAAT
*
18746610 CTTAGACTATGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18746636 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18746662 CTTA
1 CTTA
18746666 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18749237 original size:26 final size:26
Alignment explanation
Indices: 18749208--18749283 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
18749198 CCGGTCTGAT
*
18749208 CTTAGGCTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
18749234 CTTAGACTGGGAATGAACTCCATAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18749260 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18749284 TGCCTAAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18749681 original size:932 final size:914
Alignment explanation
Indices: 18747930--18755006 Score: 8133
Period size: 900 Copynumber: 7.9 Consensus size: 914
18747920 TTTCAAAACT
* * *
18747930 TATTTTTTTTGGCACGCA-AAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
18747994 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAACTCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
18748059 AATGCTCTTTAA-GGGGTGTGGGTTGTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
18748123 AAGTACCAGCACCCATTGCACATCACGTGCGAACACCCCCC-GCCCCTCGATCGTCGGAACCCTA
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * * * * *
18748187 ATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAATGCAGCA
261 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-AGCGAAGAAAAATGCGGCA
* ** * * *
18748252 CCAGCAGATGCCCGAGCCCAGCATGTGCTGTAGCAACCCTCGATCTGGTTTGATCTTAGACT-GG
325 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
*
18748316 GAAT--GAAC-T---C------CG---T--A-AGCTTAGACTGGGAATGAACTCTGTATGCCTAA
390 GAATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACTC-GTATGCCTAA
* * *
18748363 GTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCGAGCCGGGG
454 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
18748428 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTACTGCTGTAACCCTTGGTCTGGTCTGATCT
519 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
18748493 TAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAACAGATG-GATGGGCGGGC
584 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--AAC-GA-GCG-GGGGCGGGC
* *
18748557 GGGCACTACGCCGGCCAAAGAGACGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
643 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *** *
18748622 TAAGCACATCTTCATATTTCTGTGGGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGT
708 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
18748687 CCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTACTATTTTTCACGATTTTCA
773 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTTTTCACGATTTTCA
* * * *** *
18748751 AAACTTTTTGCGGTTCGGGATTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCTATAACCTTGGTA
837 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18748816 GATGTGATTCTTG
902 GACGTGATCCTTG
** *
18748829 TATTTTTGTTGGCATGCA-AAAAAAATTTGGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
18748893 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * **
18748958 CATGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGGGGGTAAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18749023 AAGTACCAGCACCCATCGCACATCACGTGCGAACACCCCCCGGCTCCCCCGATCG-CTGGAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTC-GGAACCC
* * * * ** **
18749087 CAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCTAGCGAAGAAAAATGTAG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-AGCGAAGAAAAATGCGG
* * *
18749152 CACCAGCACATGCCTGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGGCTG
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
18749217 GGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCATAAGCTTAGACTGGGAATGAACTCCG
388 GG---GAA-TCCG-AA-CTTAGACTGGGAATGAACTCCAT-AGCTTAGACTGGGAATGAACT-CG
* ** * * *
18749282 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTTGGTCGGAGGGGCGGGATGCGT
445 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * * * *
18749347 AAGCCGAGGATCGATCGAGTCCCCCACTGCGTGCTACCAATCCTGTTGCCGCAACGCTCGATCCA
510 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * * ** *
18749412 GTCCGATCTTAGACTGGCAATGAACTCCATATGAATAAGCCGACCGACGAAATAACCTGGCAGGC
575 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-AA-C--G-A-GC
* *
18749477 GGGCGGACGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCCATAGGGT
633 GGG-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
18749542 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTGGTAAAT
696 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
18749607 TCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTTGTTTTCTATTTTT
761 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
18749672 CATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGACC
826 CACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
18749737 CAAACTTGGTAGACGTGATCCTTG
891 CAAACTTGGTAGACGTGATCCTTG
* *
18749761 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
18749826 TTTGAAAAAAGT-TTCCCATTTCAGACACTTTAATGGCTACTGGTAGCGAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18749890 AATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18749955 AAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCTCGATCGTCGAAATCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCC
* * * * *
18750020 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGACGATGTTGCCCCGATGAAGAAAAATGCGG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAG-CGAAGAAAAATGCGG
* * * * * ** **
18750085 CACCAACACATGCCCGAGCCCAGGAT-TGCTGCTGCTAATCCTCGATCCACTCCAATCTTAGACT
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AACCCTCGGTCCGGTCTGATCTTAGACT
* ** * * *
18750149 -AGGAAT--G-----AG-CTCCGCATG--CT---TTGC-T----TGGCAATGAACTTCGTATGCC
387 GGGGAATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAAC-TCGTATGCC
* * * * * * *
18750195 TAAGTCAACACACGAAACGAGTGTGCAGGCGCTCAGCCGGCCAAAAGGGCGAGATGTGCAAGCCG
451 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * ** * * *
18750260 GAGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCATAACCCTCGATCTGGTTTGA
516 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA
* *
18750325 TCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG-AAACGAGCAGGCGGGCGGACA
581 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGC-GG-GGGC-G---
* *
18750389 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
640 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
**
18750454 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAAT
705 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18750519 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
770 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
18750584 CAAAAC-TTCTGCGGTTCAAGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGG
835 CAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
18750648 TGGACGTGATCCTTG
900 TAGACGTGATCCTTG
* * *
18750663 TATTTTTTTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
18750727 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCG
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-
* * *
18750792 AAA-GCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAAGGC
130 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
18750855 AAAGTACCAGAACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC
195 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCC
* * * *
18750920 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTGCCCCGGTGAAGAAAAATACGG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCAGCGAAGAAAAATGCGG
* * * *
18750985 CACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACT-
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * **
18751049 GGGAAT--GAAC-T---C----------C-GCAT-GCCTAGACTGGGAATGAACTCCATATTACT
388 GGGAATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACT-CGTATGCCT
* * * * * * * **
18751096 AAGTCAACACACAAAACGAGCGTACGGGCTCTCAGCCAGCAAGAAGGGCCAGATGCGCAAGCCGG
452 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * *
18751161 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCTGGTCTGAT
517 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
18751226 CTTAGACT-GGAATGAACTCCGTATGCCTAAGGCAACCAACG-AAACGA------GCGTGCGGGC
582 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGGGCGGGCGGGC
* * *
18751283 ACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGGTTGGG
647 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
18751348 CACATCTTCATATTTCTGCATGCCGATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCCT
712 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
18751413 TAAGCCTTCACATTAAGTTTCATGGCAAGTTGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
777 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
*
18751478 TTTTGAGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
842 TTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
18751542 TGATCATTA
906 TGATCCTTG
* * *
18751551 TATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
18751616 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
18751681 AATGCTTTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18751746 AAGTACCAGCACCCATTGCATATCATGTGCGCACACCCCTCGGCCCCCCGATCGTCGGAACCCCA
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* ** * * *
18751811 ATGCCGTCGGTCAGGTTCTTTGGCGATGCT----C-----TG----GCGATG----GTGC--C-C
261 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAGCGAAGAAAAATGCGGCAC
* * * *
18751856 CA--AC---CCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTTCGATCTGATCTTAGACT-GGG
326 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGG
* * *
18751915 AAT--GAAATT---C-------G---T--AT-GCTTCGACTAGGAATGAACTCGTATGCCTAAGT
391 AATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACTCGTATGCCTAAGT
* * ** *
18751962 CAACTCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGATGGGATGCGTAAGCCGGGGAT
456 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
18752027 CGGTCGTGTCGCCCTTTGCATGTTGCCGATCCTGTTGCCGCAACCCTCGGTTCGGTCTGATCTTA
521 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * *
18752092 GACTGGGAATGAACTACGTATGCCTAAGCCAATCGAC-CAAACGAGC--GGGCGGGCGGGCACTA
586 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGGGCGGGCGGGCACTA
* * **
18752154 CGCCGGCCAGAGAGAC-GGATGCGCAAGCTGTGGATCGGTAGGGTGGTAGGTGCATTTAGGCACA
651 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18752218 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAG
716 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * **
18752283 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAACAATTTTTGAAACTTTTT
781 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* * *
18752348 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATT
846 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
18752413 CTTG
911 CTTG
* *
18752417 TATTTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
1 TA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
18752482 ATTTGAAAAAATTGTCTTCAATTT-AGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCT
65 ATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* ** * *
18752546 CAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATATTATACGGG
129 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* ** * ** *
18752611 CTAAGTACCAGCACCCATCTTACATCATGTGCGCACAACCCCCCCGACCCCTTGATCATCGGAAC
194 CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCGATCGTCGGAAC
* * * * * *
18752676 CCCAATGTCACAGGTCATGTTCT-CGGCGATGCTCCGACGATGGTGACCC-GACGATGAAAAATG
257 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCAG-CGAAGAAAAATG
** * * * *
18752739 CAACACCAGCACATGCCCAAACCCAGCATGTGCTGCCGTAACCCTCGGT-C---C-AATC-----
320 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * *
18752794 C-----AAT-----CTTAGACTGGGAATGAACTCCGTAAGCGTAGACTGGGAATGAACTACGTAA
385 CTGGGGAATCCGAACTTAGACTGGGAATGAACTCCAT-AGCTTAGACTGGGAATGAACT-CGTAT
* * ** *
18752849 GCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCAAGCCAGAGGGGCAGGATGCGCAAG
448 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * ** * *
18752914 TCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTTCGATC
513 CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTC
**
18752979 CCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAACGAGCGGGTGGGCGG
578 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGC-GG-GGGCGG
* *
18753043 GCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGTG
641 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
18753108 TTTAGGCACATCTTCATA-TTCGTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAAT
706 TTTAGGCACATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * **
18753172 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTTTATTTTACGTGATTTT
770 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * *
18753237 TGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGG
835 CAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
18753302 CAGACATGATCCTTG
900 TAGACGTGATCCTTG
* * *
18753317 TATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
18753382 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
18753447 AATGCTCTTTCAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
18753512 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCC
* * * *
18753577 AATGCCACCGGTCAGGTTCTCCGACGA---T--G--G-T-G-CCCCGGTGAAGAAAAATGCGGCA
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAGCGAAGAAAAATGCGGCA
** * ** *
18753632 CCAGCACATGCTTGAGCCCAACATGTGCTTTCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GG
325 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
*
18753696 GAAT--GAA-TT---C------TG-------TAGCTTAGACTGGGAATGAACTCGTATGCCTAGG
390 GAATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACTCGTATGCCTAAG
* * * **
18753742 TCAACCCACGAAACGAGCATGTGGGCGCTTAGCCGGCCAGA-----GGGATGCGCAAGCCACGGA
455 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
18753802 TCG-GCTGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGTAAACCTTGGTCCGGTCTGATCT
520 TCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* *
18753866 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATG-AAACGAGC--GGGCGGGCGGGCAC
584 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGGGCGGGCGGGCAC
** * ** *
18753928 TACGCCGGCCAGAGAGATAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGAA
649 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
18753993 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
714 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * **
18754058 AGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTTACGATTTTTGAAACTTT
779 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * * * *
18754123 TTGCAGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCACCAAACTTGGTAGACGTGA
844 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
18754188 TCCTTG
909 TCCTTG
* *
18754194 TATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* **
18754259 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTACCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
18754324 AATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGACAGGGGACCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
18754389 AAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCTTGATCGTCGGAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCC-CGATCGTCGGAACCC
* ** * * *
18754454 TAATGCCGCCATTCAGGTTCTCCGACGATGGTCCGACGATGGTGCCCCGACGAAGAAAAATACGG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAG-CGAAGAAAAATGCGG
* *
18754519 CACCAGCACATGCCCGA-CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTGC-AATCTTAGAC-
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CTGATCTTAGACT
* *
18754581 GGGGAAT--GAAC-T----T-----TG---T--AT-GCTTAGACTGGGAATGAACTCCGCAAGCC
387 GGGGAATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACT-CGTATGCC
* *
18754628 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCA
451 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * * * * *
18754693 GGGATCGATTGGGTCCCTCTC-ACCTACTGTCGATCCTGCTGTCGTAACCCTAGGTCTGGTC-CA
516 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA
* * *
18754756 TTCTTAGGCTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGGGCG
581 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGAGC-GG-GGGCG
* * **
18754821 GGCGGGCACTAAGCCGGCTC-GAGAGACGGCATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTG
640 GGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
18754885 GGTTTAGGCACATCTTTTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
704 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18754950 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTT
769 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
18755007 TATGCTTACT
Statistics
Matches: 5347, Mismatches: 633, Indels: 393
0.84 0.10 0.06
Matches are distributed among these distances:
862 119 0.02
863 109 0.02
864 2 0.00
866 225 0.04
867 231 0.04
868 18 0.00
869 40 0.01
871 2 0.00
872 1 0.00
875 4 0.00
877 473 0.09
878 50 0.01
880 7 0.00
881 112 0.02
882 5 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 48 0.01
887 210 0.04
888 194 0.04
889 217 0.04
890 139 0.03
891 5 0.00
892 3 0.00
893 5 0.00
894 117 0.02
895 198 0.04
896 3 0.00
897 8 0.00
898 47 0.01
899 415 0.08
900 576 0.11
901 157 0.03
902 443 0.08
903 198 0.04
904 4 0.00
905 1 0.00
906 3 0.00
907 155 0.03
908 1 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 3 0.00
913 1 0.00
915 1 0.00
916 2 0.00
918 6 0.00
919 2 0.00
921 1 0.00
924 1 0.00
926 2 0.00
927 2 0.00
928 174 0.03
929 5 0.00
930 3 0.00
931 3 0.00
932 414 0.08
933 172 0.03
934 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (914 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAGCGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGG
AATCCGAACTTAGACTGGGAATGAACTCCATAGCTTAGACTGGGAATGAACTCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTG
Found at i:18752836 original size:26 final size:26
Alignment explanation
Indices: 18752800--18752850 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18752790 AATCCAATCT
*
18752800 TAGACTGGGAATGAACTCCGTAAGCG
1 TAGACTGGGAATGAACTACGTAAGCG
18752826 TAGACTGGGAATGAACTACGTAAGC
1 TAGACTGGGAATGAACTACGTAAGC
18752851 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTAAGCG
Found at i:18759341 original size:26 final size:26
Alignment explanation
Indices: 18759312--18759364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18759302 CTGGTCCGAT
* *
18759312 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18759338 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18759364 C
1 C
18759365 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18760181 original size:904 final size:902
Alignment explanation
Indices: 18758444--18766849 Score: 10938
Period size: 904 Copynumber: 9.3 Consensus size: 902
18758434 CCAGTCCCAT
* * * *
18758444 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
18758509 CGGCCAGAGAGGCGGGATGCGCAAGCTGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
** * * * *
18758574 TATTGCTGCAACCCTCGGTCCT-ATCTGATCTTGGACTGGGAATGAACTCCGTATCCCTAAGCCA
131 TGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18758638 ACCGACGAAACGA--------GCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18758695 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18758760 A-TTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * **
18758824 CAAC-CCATTTCTATTTTTCACGATTTTTGAAACTATTTTGCGGTTCATGATTTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACT-TTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
18758888 TTCGAAAGGTGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18758953 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
18759018 TCAAACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGATCTTTCAGGAGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18759082 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
18759147 ATCATGTTCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
714 ATCATG-T-GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
18759212 CCGGCTATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
777 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* *
18759277 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18759338 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
18759403 CGGCTTGAGGGGCGGAATGCGAAAGTCAAGGATCGATCAGGTGCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *
18759468 TGCTGCCGCAACCCTCGGTCTGAT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** *
18759532 ACCGACGAAACGAACGGGTGGGCGAGCGGGCGACCACTACGCCAGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
18759597 AGCCGTGAATTGATAATGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
18759662 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18759727 CGACTCATTTTCTATTTTTCACGATTTTCGAAACCTTTTATGGTTCGGGATTTTTTAAAATTATT
390 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TT
* * *
18759792 TTCGGAAGGAGTTTTGGCCACAACCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18759857 AAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18759922 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18759987 AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18760052 ATCATGTGCACAACCCCCCCGGCCCCCCCGATCGCCGAAATCCCAATGCCGTCGGTCAGGTTCTC
714 ATCATGTGCAC-ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* **
18760117 CGACGATGCTTTGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
778 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * *
18760182 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
843 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18760242 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18760307 CGACCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCTTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *
18760372 TGCTGCCGCAACCCTCGGTCTGGTCT-AGTCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18760436 ACCGATGAAACGAGCGGGCGAGCGGGCGCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
**
18760501 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18760566 ATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
18760631 CGACTTGTTTTCTATTTTTCATGATTTTCAAAACATTTTGCCAGTTC-AGATTTTTTAAAA-TTT
390 CGACTCGTTTTCTATTTTTCACGATTTTCGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** ** * * * *
18760694 TTCGGAAGGAGTTTTGGCACCAAACTTTTTAGAAATGATCCTTGTATTTTTTTTTTGCATCCATA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACA
* *
18760759 AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18760824 TTCAGACACTTTTAATGGCTACTGGCAACAAACCTGTAAAATATCAAGTGCTCTTTAAGGGGGTG
583 TTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18760889 TAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTATAAGGGCCAAGTACCAGCACCTATCA
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCG
* *
18760954 CACATCATGTGCACAACCCCCCCGGCCCCCCCGATCGCCGAAATCCCAATGCCGTCGGTCAGGTT
711 CACATCATGTGCAC-ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
18761019 CTCCGACGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
775 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
* * ** *
18761084 CCAGCATATGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCTTATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18761147 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18761212 CGGCCAGAGGGGTGGGATGTGCAAGCCG-GAGATCGATCGGGTCCCCCTCTACATGCTG-TCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGATCGGGTCCCCCTCTGCGTGCTGCT-GAT
* * * *
18761275 CTTG-TGGCTGCAACCCTCGGTCCGGTCT-AGTCTTAGATTGGGAATGAACTCCGTATGCCTAAG
129 CCTGCT-GCCGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
18761338 CCAACCGACGAAACGAGCGGGCAGGCGGGCGCGCGTGCACTACGCCGGCCAGAGAGACAAGATGC
192 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
18761403 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
18761468 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
18761533 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
*
18761598 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
18761663 AAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * **
18761727 TTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGATGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* **
18761792 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTTAAGTACCAGCACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
18761857 ACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCTCCGGAACCCCAATGCC--C---C--CTT
712 ACATCATGT--GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
18761915 -T-CAG-G-TTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACAAGCACATGCCCGAGC
775 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
* *
18761976 CCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGTAATGAACTCCGTATGCT
840 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG----G-A------ATG--
18762041 TAGACTGCGAATGAACTCTGTATG
892 -A-A---C---T---C-C-GTATG
*
18762065 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18762130 CGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGGTCGGGTCCTCCTCCGCAT-CTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * ** * *
18762194 TACTGCCACAACCCTTGGTCTGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18762259 CCGATGAAACGAGCGGGCGGACAGGCGCGTGGGCACTACTCCGGCCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
18762324 GCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18762389 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18762454 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
18762519 CGGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
** *
18762584 AAATTTGGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * **
18762648 AGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
18762713 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
18762778 CATGTGCGCACACCCCCCCGG-CACCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTC
716 CATGT--GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* *
18762841 CAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCCGGCACCAGCACATGCCCGAGCCC
778 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG-CAGCACCAGCACATGCCCGAGCCC
* * * *
18762906 AGCATGTGCTGCCGCAACCCTTGGTCTGATCCGATCATAGACTGGGTATGAACTCCGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18762967 CTTAGACTGGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18763032 CGGCCAGAGGGGCGGGAGGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCT-TTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * * *
18763096 CTGCTGCCGTAACCCTCGAT-TCGGTCTGATCTGAGACTGGGAATGAACTCCGTATGTCTATGCC
130 CTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * * *
18763160 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCTTTTCGTCGGCCAGAGAGATGGGATGCGT
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
18763225 AGGCCGTGGATTGATAGGGTGGTTA-GTGGGTTTAGGCACATGTTTATATTTCTGCATGCCAATG
259 AAGCCGTGGATCGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
18763289 CCATTTTTATGGCTTGTAAATTCATACAAT-G----TT----C--C-C-TTAAG------GGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18763335 GACGACTCGTTTTCTATTTTTCACGATTTTCCAAACATTTTACGGTTCGGGATTTTTTAAATTTT
388 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
*
18763400 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** * *
18763465 AAAAAGGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * ** *
18763530 TTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGC
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18763595 GAGTTCACGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18763660 TATAATGTACGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
713 CATCATGT--GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * ** * *
18763724 TCCGGCAATGCTCTGGCGATGGTGTCTCGGGGTAGAAAAATGCAGCGCCAGCACATGCCCGAGCC
776 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * * * * * *
18763789 CAGCATGTGCTACGGCAACCCTCGATCCT-ATCCAATCTTAGAATGGGAAAGAACTCCGTATC
841 CAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18763851 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGGAACGATCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
18763916 CGACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCTCCTCTGTGTGCT-ATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
** ** * * **
18763980 CTGCTGCCATAAAACTTGGT-TCGGTCTGATCTGAGACTGGGAATGAA--CCGTATATCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
18764042 AACCGACGAAACGA----GCGGGCGAGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGT
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
18764103 AGGCCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
18764168 CATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18764233 ACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTCAGGATTTTTTAAATTTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
*
18764298 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18764363 AAAAAGTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18764428 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18764493 AGTTCTCGAGGTTTGATGAGAGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18764557 ATCATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCT
714 ATCATGTGCACAC-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCT
***
18764620 CCGATAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
777 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
**
18764685 AGCATGTG-TTTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTA
842 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GG---G------A-ATG---A
18764749 GACTGGGAATGAACTCTGTATG
893 -AC------T---C-C-GTATG
* * *
18764771 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** **
18764836 CGGCCAGAGGGACGGGATGCGCAA-CCCAGAGATTGATCGGGTCCCCCTCTATGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * ** *
18764900 CTGCTACCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
18764965 ACCAACGAAAC-A-------AGTAGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATACGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* **
18765022 AGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18765087 ATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18765152 CGACTCGTTTTCTATTTTTCACGATTTTCCAAACATTTTACGGTTTGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
18765217 TCGAAAGGAGTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAA
455 TCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18765282 AAAAATTCAGCTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
519 AAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18765346 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18765411 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18765476 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCT
713 CATCATGTGCACAC-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** ** *
18765541 CCGGTGATGCTTCGATGATGGTGCCCCGGTGAAGAAAAATGC-GCCACCAGCACATGCTCGAGCC
777 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCC
* ** *
18765605 CAGAATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
841 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18765667 CTTAGACTGGGAATGATCTCTGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18765732 CGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATTGACCGGGTCCCCCTCAGTGTGCTG-TCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * * * * *
18765796 CTGCTACTGCAACCCTTGATTTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
18765861 ACCGACGGAACCAGTGGGCGGACGGACGGGCGGGCACTACGTCGGCCTGAGAGGCAGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
18765926 AGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
18765991 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTACATGTCAAGTTTTAATGGCAAG
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAG
* * ** * *
18766056 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTTAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
*
18766121 TTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTT-TTGGCATGCACA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACA
* * * * *
18766185 AAAATATTCAGCTAAAAACCCGAACTGTACAGGATTTTATGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18766250 TTCAGAC-CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGA
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-
* * * *
18766314 T-AGTTCTCGAGATTTAATGAGGGATA-GGGG-CAATATAAGGGCCAAATACCAGCACCCATCAC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18766376 ACATCATGTGCACACACCCCTCCGG--CCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTT
712 ACATCATGTGCACAC-CCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * *
18766439 CTCGGGCGATGCTCCAGCGATGGTGCCCCAATGAAGAGAAATGCA-CTACCAGCACATGCCAGAG
775 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGC-ACCAGCACATGCCCGAG
* * * * *
18766503 CCCAGCATGTGCAGCTGTAACCCTCGGTCAGGTCCAATCTTAGACT-GGAATGAAC-CCGTATG
839 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18766565 CTTAGACTGGGATTGAACTTCGTATGGCTTAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18766630 CGGCCAGAGGGGAGGGATGCACAAGCTG-GGTATCG-GCTAGGTCCCCCTCTGCATGCTACCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGATC-GGGTCCCCCTCTGCGTGCTGCTGAT
* * ** ** *
18766693 CCAGCTGCTGCAACCCTCCATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18766758 AACCGATGAAACGA----GTGGGC---C-GGCGGGCACTACACCAGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18766815 AAGCCATGGATC-ATAGGGTGGTAGGTGGCTTTAGG
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
18766850 AAGGATTTTT
Statistics
Matches: 6681, Mismatches: 671, Indels: 325
0.87 0.09 0.04
Matches are distributed among these distances:
877 1 0.00
878 129 0.02
882 27 0.00
883 2 0.00
884 413 0.06
885 212 0.03
886 1 0.00
887 1 0.00
889 22 0.00
890 46 0.01
891 6 0.00
892 92 0.01
893 6 0.00
894 214 0.03
895 107 0.02
896 235 0.04
897 286 0.04
898 179 0.03
899 10 0.00
900 125 0.02
901 50 0.01
902 299 0.04
903 566 0.08
904 1095 0.16
905 892 0.13
906 44 0.01
907 4 0.00
908 2 0.00
909 2 0.00
910 2 0.00
911 3 0.00
912 1 0.00
913 2 0.00
914 1 0.00
915 1 0.00
916 24 0.00
917 566 0.08
918 340 0.05
919 204 0.03
920 204 0.03
921 105 0.02
922 57 0.01
923 2 0.00
924 2 0.00
925 3 0.00
926 1 0.00
927 32 0.00
928 63 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18760254 original size:26 final size:26
Alignment explanation
Indices: 18760216--18760268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18760206 CCGGTCCGAT
* *
18760216 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18760242 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18760268 C
1 C
18760269 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18761157 original size:26 final size:26
Alignment explanation
Indices: 18761121--18761173 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18761111 CCAGTCCGAT
*
18761121 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18761147 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18761173 C
1 C
18761174 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18762053 original size:26 final size:25
Alignment explanation
Indices: 18762013--18762091 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
18762003 CTGGTCCAAT
18762013 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
*
18762039 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
18762065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
18762091 C
1 C
18762092 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 47 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18762972 original size:26 final size:26
Alignment explanation
Indices: 18762943--18762993 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18762933 GATCCGATCA
* *
18762943 TAGACTGGGTATGAACTCCGTATGCT
1 TAGACTGGGAACGAACTCCGTATGCT
*
18762969 TAGACTGGGAACGAACTTCGTATGC
1 TAGACTGGGAACGAACTCCGTATGC
18762994 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCGTATGCT
Found at i:18763861 original size:26 final size:26
Alignment explanation
Indices: 18763825--18763875 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18763815 CCTATCCAAT
18763825 CTTAGAATGGGAAAGAACTCCGTATC
1 CTTAGAATGGGAAAGAACTCCGTATC
* *
18763851 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGAATGGGAAAGAACTCCGTAT
18763876 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAAAGAACTCCGTATC
Found at i:18764755 original size:26 final size:27
Alignment explanation
Indices: 18764719--18764797 Score: 119
Period size: 26 Copynumber: 3.0 Consensus size: 27
18764709 CTGGTCCGAT
18764719 CTTAGACTGGGAATGAACTTC-ATATG
1 CTTAGACTGGGAATGAACTTCTATATG
*
18764745 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTCTATATG
*
18764771 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTCTATATG
18764797 C
1 C
18764798 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 2 0.04
26 49 0.96
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTTCTATATG
Found at i:18768141 original size:26 final size:26
Alignment explanation
Indices: 18768105--18768157 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18768095 CCTGTCCGTT
18768105 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18768131 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18768157 C
1 C
18768158 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18770773 original size:26 final size:26
Alignment explanation
Indices: 18770744--18770793 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18770734 GTCCGATCTG
18770744 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
18770770 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
18770794 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:18771669 original size:26 final size:26
Alignment explanation
Indices: 18771633--18771685 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18771623 CTAGTTCGAT
18771633 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18771659 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18771685 C
1 C
18771686 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18773291 original size:11 final size:11
Alignment explanation
Indices: 18773275--18773317 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
18773265 CGGTCAGGTT
*
18773275 CTCCGGTGACG
1 CTCCGGTGATG
18773286 CTCCGG-GATG
1 CTCCGGTGATG
*
18773296 CTCCGGCGATG
1 CTCCGGTGATG
18773307 CTCCGGTGATG
1 CTCCGGTGATG
18773318 GTGCCCCGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.09, C:0.33, G:0.37, T:0.21
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:18773301 original size:21 final size:22
Alignment explanation
Indices: 18773275--18773317 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
18773265 CGGTCAGGTT
*
18773275 CTCCGGTGACGCTCCGG-GATG
1 CTCCGGCGACGCTCCGGTGATG
*
18773296 CTCCGGCGATGCTCCGGTGATG
1 CTCCGGCGACGCTCCGGTGATG
18773318 GTGCCCCGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.09, C:0.33, G:0.37, T:0.21
Consensus pattern (22 bp):
CTCCGGCGACGCTCCGGTGATG
Found at i:18773427 original size:26 final size:26
Alignment explanation
Indices: 18773398--18773447 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18773388 CCAATCCGAT
18773398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18773424 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18773448 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18774334 original size:26 final size:26
Alignment explanation
Indices: 18774297--18774349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18774287 CTGATCCGAT
*
18774297 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
* *
18774323 CTTAGACGGGGAATGAATTCCGTATG
1 CTTAGACGGGGAATGAACTCCATATG
18774349 C
1 C
18774350 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:18775073 original size:896 final size:896
Alignment explanation
Indices: 18772591--18776747 Score: 5593
Period size: 920 Copynumber: 4.6 Consensus size: 896
18772581 ACTTATACCT
* * * * * *
18772591 AAGCCGGGGATCGGTCGGGTCTCGCTCTGCGTGCTGCTGATCCTATTGCCACAACCCTCAGTCCT
1 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGT-CT
* *
18772656 -GTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAATGAGCAGGCGGG
65 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CAGGCGGG
* * * *
18772720 CGGGCGGGCATTACGCCAGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
126 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
18772785 GGTTTTACGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
191 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18772850 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
256 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** *
18772915 TTTGAAACTTTTTATAGTTCGGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
321 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
18772980 GGTAGACGAGATCCTTGTATTTTTGTTGGCGTCCACAAAAACATTCAGCTAAAAACTCGAAGTGT
386 GGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
18773045 ACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTATTGGCTACTGGCAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18773110 AAACTTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
18773175 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCTCACACCCCCCGGCCCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
* ** * *
18773240 CCGATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGGTGACGCTCCGGGATGCTCCGGCGA
646 CTGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCC---G--G-T----GATGCT----CTA
* * *
18773305 TGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGT
697 -G--CC---GATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* **
18773370 GCTGCCGCAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
756 GCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
18773435 AATGAACTCCGTACGCCTAAGTCAACCCACGAAA-GAAGCGTACAGGCACTTC-GCCGGCCAGAG
821 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTACGGGCGC-TCAGCCGGCCAGAG
*
18773498 GGACGGGATACGC
884 GGGCGGGATACGC
* * * * * *
18773511 AAGCCAGGGATCGACCGGGTCCTCCTCTGCGTGCTGCCGATCCTACTACCGTAACCCTCATTTCT
1 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCA-GTCT
*
18773576 -GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
65 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---GGCGGG
* * *
18773640 CGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGCGTGGTAGGT
126 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** **
18773705 GGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGTTTTGTAAATTCATACA
191 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
18773770 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
256 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * * *
18773835 TTCAAAACTTTTTGCGGTTCGGGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTT
321 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
18773900 GGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
386 GGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
18773965 ACAAGATTTTGCGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTATTGGCTACTGGTAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
18774030 AAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* ** * *
18774095 GGGCCAATATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGTGTGCACAACCCCCCGACCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCGGCCCC
* * *
18774160 CC-GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTAG-CGATGGTGCAC
645 CCTGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTAGCCGATGGTGCCC
* * * **
18774223 CGACAAAGAAAAATGCGGCACCAACACATGCTCAAGCCCAGCATGTGCTGTTGCAACCCTCGGTC
710 CGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
18774288 TGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAATTCCGTATGCCTA
775 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** **
18774353 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGTGCGAAATGTGC
840 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
* * * * * ** ** **
18774410 AAGTCGGGGATCGATCGGGTCCCCCGCTGTGCGCTACCGATCCTACTGTTGTTACCCTTGGTCTG
1 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCTG
* * *
18774475 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGC
66 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGGC
* * * *
18774540 GGGCACTACGTCGGCCAAAGAAACGGGATGCGCAAGCCGTGGATCGATCGGGTGGTCA-GTAGGT
131 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGT
*
18774604 TTAGGCACATCTTCATATATTCTGCATGCCAAGGCCATTTTTATGGCTTGTAAATTCATACAATG
195 TTAGGCACATCTTCATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18774669 GTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGACGACTCGTTTTCTGTTTTTCATGATTTTT
259 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * ** *
18774734 GAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTGCAAAACTTGGT
324 GAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
18774799 AGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAAATCGAAGTGTACA
389 AGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18774864 AGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
454 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18774929 CCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
519 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** *
18774993 CCAATATAAGGGCCAAGTACCAGCACACATCGTACATCATGTCCGCACACCCCCCGGCTCCCCCT
584 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC-CCCCCT
* ** *
18775058 GATCATC-AGAACCCCAATACCGTCGGTCAGGTTCTCC---G--G---T----GATGGTGCCCCA
648 GATCATCGA-AACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTAGCCGATGGTGCCCCG
* * ** * * *
18775110 ACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA-CATGTGCTATCACAACCCTCTGTC-C
712 ACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
18775173 AGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
777 A-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
18775238 GTCAACCCACGAAACGAGCATACGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCGT
841 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
* * * * *
18775294 AAGTCGGGGATCGATCGGGTCCCCC-CTGTGTGCTGCCGATCCTGCTGCCTCAACCCTCAGTTTG
1 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCTG
* *
18775358 GTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGCCGGGC
66 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--GG-CGGGC
* * * * *
18775423 GGGCGGGCACTATGCCGGCCGGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTG
127 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
18775488 GGTTTTGGCACATCTTCATATTTTTGCATG-CAATTGCCATTTTTATGGCTTGTAAATTCATACA
192 GGTTTAGGCACATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGGCTTGTAAATTCATACA
* *
18775552 ATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
256 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** *
18775617 TTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTT
321 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
18775682 GGTAGACGTGATACTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
386 GGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
18775747 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18775812 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * *
18775877 GGGCGAATGTAAGGGCCAAGTACCAGCACCAATCACATATCATGTGCGCACACCGCCCGG-CCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
18775941 CTCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTC-CGACGATGGTCCCC
646 CT-GATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTAGCCGATGGTGCCC
* * * *
18776005 CGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTTCTGCCGCAACCCTCGGTC
710 CGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * ** * *
18776070 TGGTCCGATCTTAGATTGGAAATGAACTCCGTATAATTGGACTGGGAATGAACTCTGTATGCCTA
775 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
18776135 AGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATACGC
840 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
* * * * * * *
18776192 AA-CCTGGGGATCGGTCGGG-CCCTTCTCTGCGTGCTGCTGATCTTGCTGCCACAACCCTCAATC
1 AAGCC-GGGGATCGATCGGGTCCC-CCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTC
* * *
18776255 CGGTCCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGCGG
64 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-------G
*
18776320 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGG
121 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
18776385 TAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTACAGCTTGTAAATTC
186 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
18776450 ATACAATGGTCCCTTAAGCCTTCA-AGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTC
251 ATACAATGGTCCCTTAAGCCTTCACA-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
18776514 ACAATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATCTTTTCAGAAGGATTTTTGGCCCC
315 ACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * * *
18776579 AAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTAAGCTAAAAACCCG
380 AAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
18776644 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCCACT
445 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
18776709 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
510 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
18776748 ATCAACCGGG
Statistics
Matches: 2875, Mismatches: 314, Indels: 113
0.87 0.10 0.03
Matches are distributed among these distances:
883 78 0.03
884 147 0.05
885 52 0.02
886 344 0.12
887 158 0.05
888 1 0.00
889 1 0.00
891 2 0.00
893 1 0.00
894 9 0.00
895 162 0.06
896 345 0.12
897 50 0.02
898 142 0.05
899 344 0.12
900 1 0.00
902 1 0.00
903 391 0.14
904 5 0.00
905 1 0.00
906 2 0.00
910 6 0.00
914 1 0.00
915 1 0.00
916 1 0.00
917 3 0.00
919 2 0.00
920 609 0.21
921 15 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCTG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGCGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCTGAT
CATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTAGCCGATGGTGCCCCGACAA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
Found at i:18775219 original size:26 final size:26
Alignment explanation
Indices: 18775181--18775233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18775171 CCAGTCTGAT
18775181 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
18775207 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
18775233 C
1 C
18775234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:18777393 original size:26 final size:26
Alignment explanation
Indices: 18777355--18777407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18777345 CCGGTCTGAT
*
18777355 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
**
18777381 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
18777407 C
1 C
18777408 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:18779756 original size:26 final size:26
Alignment explanation
Indices: 18779720--18779772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18779710 CTGGTCTGAT
18779720 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18779746 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18779772 C
1 C
18779773 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18779807 original size:726 final size:734
Alignment explanation
Indices: 18778348--18779836 Score: 2236
Period size: 726 Copynumber: 2.0 Consensus size: 734
18778338 TGGGCACTAC
* * * *
18778348 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18778413 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGC
66 CTTCATATTTCTGCATACCAATGCCATTTTTATGGCCTGTAAATTCATACAATCGTCCCTTAAGC
*
18778478 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACAATTTTCAAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACAATTTTCAAAACTATTTG
* * * * *
18778543 CGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
196 CGGTTCGGGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGCTAGACATGATCC
*
18778608 TTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAAGTCGAAGCGTACAAGATTTTGTGA
261 TTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAAGTCGAAGCGTACAAGATTTTATGA
* * * * *
18778673 CTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGACAGCAAACATATAAAATC
18778738 TCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
18778803 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCCGACCCCCCCAATCGCCAG
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCACCCCCCGACCCCCCCAATCGCCAG
** *
18778868 AACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCACCGGTAATGGTGCCCCGACGAAGAAAAA
520 AACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCACCGACAATGGTGCCCCGACAAAGAAAAA
* **
18778933 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATTGGAACCCTCGGTTCGATCTGATCTTA
585 TACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGGAACCCTCGGTTCGATCTGATCTTA
**
18778998 GACTGGGAAAGAACTTTGTATACTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
650 GACTGGGAAAGAACTCCGTATACTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
*
18779063 AACGAGCGTGCAGGCGCTCA
715 AACGAACGTGCAGGCGCTCA
* *
18779083 GCCGACCAGAGGGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGTGTTTAGGCACAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
18779148 CTTCATATTTCTGTGTACCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATACCAATGCCATTTTTATGGCCTGTAAATTCATACAATCGTCCCTTAAGC
* * * **
18779213 CTTCACGTGAAGTTTCATGGCAAGGCGACTGGTTTTCTA-T-TTCACGATTTTTGAAAC-ATTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACAATTTTCAAAACTATTTG
* *
18779275 CGGTTCGGGA-TTTTGAAAATTTTTTCAGGAA-TAGTTTTGGCCCCAAACATGCTAGACATGATC
196 CGGTTCGGGATTTTTGAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACATGCTAGACATGATC
*
18779338 CTTGTA-TTTTG-TGGCATTGCACCAAAAA-ATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTA
260 CTTGTATTTTTGTTGGCA-TGCA-CAAAAATATTCAGCTAAAAAGTCGAAGCGTACAAGATTTTA
*
18779400 TGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAAA-ATATAAA
323 TGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGACAGCAAACATATAAA
*
18779464 ATCTCAGATGCTCTTTAAGGTGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGGCCAATA
388 ATCTCAAATGCTCTTTAAGG-GGATGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGGCCAATA
* *
18779528 TAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA-CACCCCCCG-GCCCCCCGATCG
451 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCACCCCCCGACCCCCCCAATCG
* * * * ** * * *
18779589 CTAGAACCCCAATGCCGTCGGTCAGGTTCCTCGGGTGATGCTCCGACGATGGTGCCCCGGCAAAG
516 CCAGAACCCCAATGCCGCCAGTCAGGTT-CTCCGACGATGCACCGACAATGGTGCCCCGACAAAG
* * *
18779654 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGTAACCCTCGG-TCTGGTCTG
580 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGGAACCCTCGGTTC-GATCTG
* *
18779718 ATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTACGTCAA
644 ATCTTAGACTGGGAAAGAACTCCGTATACTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAA
*
18779782 CCCACGAAACGAACGTGCGGGCGCTCA
708 CCCACGAAACGAACGTGCAGGCGCTCA
* *
18779809 GCCGGCCTGAGGGGCAGGATGCGCAAGC
1 GCCGGCCAGAGGGGCGGGATGCGCAAGC
18779837 TGGGGATTGG
Statistics
Matches: 684, Mismatches: 62, Indels: 25
0.89 0.08 0.03
Matches are distributed among these distances:
725 37 0.05
726 199 0.29
727 3 0.00
729 94 0.14
730 109 0.16
731 55 0.08
732 16 0.02
733 14 0.02
734 1 0.00
735 156 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (734 bp):
GCCGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATACCAATGCCATTTTTATGGCCTGTAAATTCATACAATCGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACAATTTTCAAAACTATTTG
CGGTTCGGGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGCTAGACATGATCC
TTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAAGTCGAAGCGTACAAGATTTTATGA
CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGACAGCAAACATATAAAATC
TCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCACCCCCCGACCCCCCCAATCGCCAGA
ACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCACCGACAATGGTGCCCCGACAAAGAAAAAT
ACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGGAACCCTCGGTTCGATCTGATCTTAG
ACTGGGAAAGAACTCCGTATACTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAACGTGCAGGCGCTCA
Found at i:18780654 original size:26 final size:26
Alignment explanation
Indices: 18780604--18780654 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18780594 CTGGTCCAAT
* *
18780604 CTTAGACTGTGAATGAATGCTGTATA
1 CTTAGACTGGGAATGAATGCCGTATA
18780630 CTTAGACTGGGAATGAACT-CCGTAT
1 CTTAGACTGGGAATGAA-TGCCGTAT
18780655 GCCTATGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATGCCGTATA
Found at i:18781524 original size:26 final size:26
Alignment explanation
Indices: 18781495--18781547 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18781485 CCGGTCCAAT
18781495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18781521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18781547 C
1 C
18781548 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18783332 original size:26 final size:26
Alignment explanation
Indices: 18783296--18783348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18783286 CTGGTTTGAT
18783296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18783322 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18783348 C
1 C
18783349 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18784238 original size:25 final size:26
Alignment explanation
Indices: 18784197--18784249 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
18784187 GGTTCGATCT
* *
18784197 TAGACTGGGAATTAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18784223 TAGACT-GGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18784248 TA
1 TA
18784250 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18785129 original size:26 final size:26
Alignment explanation
Indices: 18785093--18785145 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18785083 CCAGTCCGAT
*
18785093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18785119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18785145 C
1 C
18785146 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18787121 original size:159 final size:159
Alignment explanation
Indices: 18786828--18787233 Score: 544
Period size: 159 Copynumber: 2.6 Consensus size: 159
18786818 GCCTAGCATG
* * * *
18786828 TGCTACCGTAACCCTTGGTCTGGTCCGATCTCAGACTGGGAATGAACTCCATATGCCTAAGTCAA
1 TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
*
18786893 CCCACGAAATGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGA
66 CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGA
* *
18786958 TCGGGCCCCCCTCTGCGTGTTGTCGATCC
131 TCGGGCCCCCCTCTACGTGCTGTCGATCC
* * * * * *
18786987 TGCTACTGCAACCCTCGGTCTAGTTCGATGTTAGATTGGGAATGAACTCCGTATACCTAAGTCAA
1 TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * *
18787052 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGG
66 CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGA
*
18787117 TCGGGTCCCCCTCTACGTGCTGTCGATCC
131 TCGGGCCCCCCTCTACGTGCTGTCGATCC
* * * *
18787146 TACTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTT-AGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18787210 ACCGATGAAACGAGCGGGCGGGCG
65 ACCCACGAAATGAGCGTGCGGGCG
18787234 GGCACTACGC
Statistics
Matches: 212, Mismatches: 34, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
159 210 0.99
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCGA
TCGGGCCCCCCTCTACGTGCTGTCGATCC
Found at i:18787935 original size:26 final size:26
Alignment explanation
Indices: 18787884--18787936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18787874 CTGGTCCGAT
**
18787884 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
18787910 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
18787936 C
1 C
18787937 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:18788583 original size:900 final size:903
Alignment explanation
Indices: 18787025--18791565 Score: 6344
Period size: 900 Copynumber: 5.0 Consensus size: 903
18787015 TGTTAGATTG
* *
18787025 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * *
18787090 GGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCGC
66 GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCTTCGTGCTGCCCATCCTACTGCCGC
* * * * *
18787155 AACCCT-TGGTCTGGTCCAATCTTAGACTTA-GAATGAACTCCGTATGCCTAAGCCAACCGATGA
131 AACCCTCAGTTC-GATCCAATCTTAGAC-TAGGAATGAACTCCGTACGCCTAAGCCAACCGACGA
*
18787218 AACGA----GCGGGCGGGC--G--GGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGG
194 AACGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* **
18787275 ATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
18787340 GGCTTGTAAATTTATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
18787405 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAACTTTTTTGGAAGG
389 TTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTTGAAAGG
* * *
18787470 ACTTTTGGCCCCAAACTTGGTAGACGA-GATCCTTGTATTTTTGTTGGCATGCACAAAACAATCC
454 AGTTTTGGCCCCAAACTTGGTAGAC-ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
18787534 AGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTTAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
* *
18787599 TTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
18787664 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * **
18787728 CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGACA
713 CGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATG
**
18787793 CTCTGGCGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
778 CTCTGATGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
18787858 TGCCGCCACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTA
843 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA
* * * * * *
18787919 GGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACCATAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * *
18787984 GGGTGGGATGCACAAGTCGGGGATCGATTGGGCCCCCCTCTTCGTGCTGCCCATCCTACTGCCGC
66 GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCTTCGTGCTGCCCATCCTACTGCCGC
* *
18788049 AACCCTCAGTTCGATGCGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAA
131 AACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAA
* * *
18788114 CGAGCGCGCGGGCGGGCAGGTAGGCACTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
196 CGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
18788179 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAAGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
18788244 CTTGTAAATTCATACAATGGTCCC-TAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
18788308 TCTATTTTTCAAGATTTTTGAAACTTTTTGCAGTTCTGGATTTTTTAAAATTTTTTTGAAAGGAG
391 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTTGAAAGGAG
* *
18788373 TTTTGGCCCCAAACCTGGTAGACATGATCCTTGT-TTTTTGTTGGCATGCAAAAAAAAATTCAGC
456 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
18788437 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
* *
18788502 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18788567 TTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
18788632 ACA-CCCCCCGGCCCCCCGATCGCCAGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGATGCTC
716 ACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
** * * *
18788696 TGGCGATGGTGCACCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCCGC
781 TGATGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* ** * *
18788761 CGCCACCCTCGGTCTGGTCTTATCTTAGACTAGGAATGAACTCTATATGCTTAGACTA
846 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA
* * * * *
18788819 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAATCAAGCGT-AGGGCGCTCAGCCGGCCATAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * ** *
18788883 GGGCAGGATGCACAAGTCGGGGATCGATCGGCTCCCCCTCTGT-GTGCCACCCATCCTACTACCG
66 GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCT-TCGTGCTGCCCATCCTACTGCCG
* * * *
18788947 CAACCTTTAGTTTGATGCAATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAA
130 CAACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAA
* * * *
18789012 ACGAGCGCACGGGCGGGCAGGTAGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGA
195 ACGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18789077 TCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAAAGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
18789142 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGACAAGACAACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * * * *
18789207 TTCTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTC-GATATTTTTTAAAATTTCTTCGGAAGG
390 TTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTTGAAAGG
18789271 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-TTTTTGTTGGCATGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
18789335 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACT
* *
18789400 TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
18789465 GGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18789530 GCACA--CCCCCGGCCCCCCGATCGCC-GAAACCTCAATGCCGCCGGTCAGGTTCTCCGACAATT
714 GCACACCCCCCCGGCCCCCCGATCGCCGGAACCCT-AATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * *
18789592 CTCCGATGATTGTGCCCCGACGAAGAAAAATGCGGCACTAGCACATGCCCAAGCCCAGCATGTGC
778 CTCTGATGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * ** * * * *
18789657 CGCTGCAACCCTCAGTCCCGTCCGATCCTAGACTGGGAATGGACT-TCATATGCTTAGACTG
843 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTA
18789718 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * *
18789783 GGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCACTC-TCGATGCTACCGATCCTGCTGCCG
66 GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCTTCG-TGCTGCCCATCCTACTGCCG
* * * * *
18789847 CAACCATC-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATC-CCTAAGCCAACCGATG
130 CAACCCTCAGTTC-GATCCAATCTTAGACTAGGAATGAACTCCGTA-CGCCTAAGCCAACCGACG
* * * ** * *
18789910 AAACTAGCGGGCGAGCGGGTGGGCAGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTG
193 AAACGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
** *
18789975 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAAATGCC-ATGCCATTTTCA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
**
18790039 TGGCTTGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
18790104 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGCAGTT-TGAGATTTTTTAAAATTTATTT-AGA
388 TTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTTGA-A
* * * ** *
18790167 ATGAGCTTTGGCCCCAAACTTGGTAAATGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
18790232 TCAGCTAAAAACTCAAAGTGTGCAAGATTGTGTGACCATTTGAATAAAA-TGTCCCCATTTCAGA
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTAAGA
* *
18790296 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGAGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18790361 TCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
18790426 GTGCGCACACCCCCCCGAACCCCACGATCGCCGGAACCCCAATGTCGCCAGCCAGGTTCTCAGGC
710 GTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGC
* * * * *
18790491 GGTGCTCCGATGATGGTGC-CAAGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCA
774 GATGCTCTGATGATGGTGCAC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
18790555 TGTGTTGTCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
838 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
18790620 A
903 A
** * * * *
18790621 GGAATGAACTCTATTTGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * * * * * *
18790686 GGGCGGGATGCGCAAGCCGAGGATTGATCGGGTCCCCTTCTGCATGTTGCCAATCTTGCTGCCGT
66 GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCTTCGTGCTGCCCATCCTACTGCCGC
* * * ** *
18790751 AACCCACGGTCCGATCGGATCTTAGACT-GGTAATGAACTCCGTATGCCTAAGCCAACCGACGAA
131 AACCCTCAGTTCGATCCAATCTTAGACTAGG-AATGAACTCCGTACGCCTAAGCCAACCGACGAA
* * * * *
18790815 ACGAGCGGGCGGGCAGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
195 ACGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
18790880 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
18790945 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
18791010 CTCTATTTTTCACA-ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAG
390 TTCTATTTTTCA-AGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTTGAAAGG
* * * * *
18791074 TGTTTTGGCCCCAAACTTGGTAGAGATGATCCGTGTATTTTTTTTGGGATGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
18791139 G-TGAAAAACTCAAAGTGTACATGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 GCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
* * * *
18791203 TTTATTTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18791268 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
18791333 CGCACACCCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
713 CGCACACCCCCCCGGCCCCCC-GATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * * **
18791398 GCT-TCGATAATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCGCGAGCCCAGCACAT
777 GCTCT-GATGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
18791462 TCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTG
841 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA
* * *
18791525 GGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGC
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
18791566 AGGCGGACGG
Statistics
Matches: 3266, Mismatches: 336, Indels: 80
0.89 0.09 0.02
Matches are distributed among these distances:
893 2 0.00
894 168 0.05
895 3 0.00
898 18 0.01
899 634 0.19
900 1173 0.36
901 167 0.05
902 134 0.04
903 407 0.12
904 557 0.17
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGTCGGGGATCGATTGGGTCCCCCTCTTCGTGCTGCCCATCCTACTGCCGC
AACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAA
CGAGCGCGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTTGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
TGATGATGGTGCACCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA
Found at i:18788835 original size:26 final size:26
Alignment explanation
Indices: 18788784--18788836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18788774 CTGGTCTTAT
*
18788784 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18788810 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCATATG
18788836 C
1 C
18788837 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18789734 original size:26 final size:26
Alignment explanation
Indices: 18789685--18789735 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18789675 CGTCCGATCC
* *
18789685 TAGACTGGGAATGGACTTCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18789711 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
18789736 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18791519 original size:26 final size:26
Alignment explanation
Indices: 18791490--18791542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18791480 CCGGTCCGAT
18791490 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
18791516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18791542 C
1 C
18791543 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18792243 original size:744 final size:745
Alignment explanation
Indices: 18790771--18792260 Score: 2631
Period size: 744 Copynumber: 2.0 Consensus size: 745
18790761 CCGATCGGAT
* * * * *
18790771 CTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCAGGCGGACAGGCGCG
**
18790836 CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18790901 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
18790966 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
18791031 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
* **
18791096 GAGATGATCCGTGTATTTTTTTTGGGATGCACAAAAAAATTCAGTGAAAAACTCAAAGTGTACAT
326 GAGATGATCCGTGTATTTTTTTTGGGAAGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAT
* * * *
18791161 GATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTTGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
*
18791226 CTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
18791291 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCTG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTG
* *
18791356 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGATAATGGTGCCCCGATG
586 ATCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTTCGACAATGGTGCCCCGATG
* * *
18791421 AAGAAAAATGCGGCACCAGCACATGCGCGAGCCCAGCACATTCTACCACAACCCTCGGTCCGGTC
651 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCACATGCTACCACAACCCTCGGTCCGATC
18791486 CGATCTTAGACTGGGAAAGAACTCCGTATG
716 CGATCTTAGACTGGGAAAGAACTCCGTATG
*
18791516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCAGGCGGACGGGCGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCAGGCGGACAGGCGCG
*
18791581 CGGGCACTACCCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18791646 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
18791711 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
18791776 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
*
18791841 GAGATGATCCTTGTA-TTTTTTTGGGAAGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAT
326 GAGATGATCCGTGTATTTTTTTTGGGAAGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAT
18791905 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
*
18791970 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
18792035 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTG
* *
18792100 ATTGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGATG
586 ATCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTTCGACAATGGTGCCCCGATG
* ** * ** *
18792165 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTTGGTCCGATC
651 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCACATGCTACCACAACCCTCGGTCCGATC
* ** *
18792230 TGATCTTAGACTGGGAATTAACTTCGTATG
716 CGATCTTAGACTGGGAAAGAACTCCGTATG
18792260 C
1 C
18792261 CTAAGTCAAC
Statistics
Matches: 707, Mismatches: 38, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
744 377 0.53
745 330 0.47
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (745 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCAGGCGGACAGGCGCG
CGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
GAGATGATCCGTGTATTTTTTTTGGGAAGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAT
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
CTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTG
ATCGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTTCGACAATGGTGCCCCGATG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCACATGCTACCACAACCCTCGGTCCGATC
CGATCTTAGACTGGGAAAGAACTCCGTATG
Found at i:18793150 original size:26 final size:26
Alignment explanation
Indices: 18793111--18793163 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18793101 ATGGTCTGAT
* *
18793111 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
* *
18793137 CTTAAACTGGGAATCAACTCTGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
18793163 C
1 C
18793164 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCCGTATG
Found at i:18794056 original size:26 final size:26
Alignment explanation
Indices: 18794020--18794072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18794010 CCGATCCGAT
*
18794020 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
18794046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18794072 C
1 C
18794073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18795449 original size:892 final size:892
Alignment explanation
Indices: 18791516--18795929 Score: 5629
Period size: 892 Copynumber: 4.9 Consensus size: 892
18791506 ACTCCGTATG
* * *
18791516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCAGGCGGACGGGCGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAC-A--A-G-TGA---GCGGG
* *
18791581 CGGGCACTACCCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
57 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18791646 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
122 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18791711 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTTG
187 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
18791776 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGTGTTTTGGCCCCAAACTTGGTA
252 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18791841 GA-GATGATCCTTGTA-TTTTTTTGGGAAGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACA
316 GACG-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
* *
18791904 TGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
380 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18791969 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
445 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
18792034 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCT
510 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * *
18792099 GATTGCCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGAT
575 GATCGCCGGAACCCCAATGCCGCCGGTCA-GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
*
18792164 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAA-CC-C--T-T-G-
639 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGT
*
18792222 --G-TC-----C-------G-A-TCTG-AT-CTTAGACTGGGAATTAACT-TCGTATGCCTAAGT
704 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGT
* * * * * **
18792267 CAACCTACAAAATGAGTGTGCGGGCGCGCAGCCGGCCAGAGGGGCGGGATGCGCATTCCGGGGAT
768 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGAT
* * * ** * * * * **
18792332 CAGTCGGGGCCCCCTCTAAGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCGGTCCAAT
832 CAGTAGGGTCCCCCTCTATGTGCTCCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGAT
* * * * * * *
18792393 CTTAGATTGGTAATGAAGTTCGTATGCCTAAGCCAAGCGATGAAACAAGCGAACGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AACAAGTG-A--G-CGGGC--G
* * *
18792458 TAGGCACTACGCCGGCCAGAGAGACGCGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGT
59 --GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18792523 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
122 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18792588 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAGTCGTTCTCTATTTTTCATGATTTTCG
187 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * ** *
18792653 AAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTGCAAAATTGGTA
252 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18792718 GACATGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
316 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
*
18792783 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
381 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18792848 CTGTAAAACCTCAAATGCTCTTTAAGACGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
446 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * *
18792913 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGAACA-CCCCCCGGCTCCCCCG
511 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* ** * * * *
18792977 ATCGCTGGAACCCCAATGCCATCGGTCACGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGCG
576 ATCGCCGGAACCCCAATGCCGCCGGTCA-GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* ** *
18793042 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTATGGTC
640 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTC
* * * * *
18793107 TGATCTTAGACTGAGAATGAACTCCGTATGCTTAAACTGGGAATCAACTCTGTATGCCTAAGTCA
705 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * ** *
18793172 ACCCACAAAACGAGCGTGCGGGCGCTCATCCGACCAGAGGGGTAGGATGCGCAAGTCGGGGATCG
770 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATC-
** * * * * ** *
18793237 ACCA-AGTCCCCCTCTGTGTGC-CACCGATCCTGCTGCCGCAACCCTTGGTCTAGTCTGAT
833 AGTAGGGTCCCCCTCTATGTGCTC-CCGATCCTGCTACCACAACCCTCAGTCTGGTCTGAT
* * * *
18793296 CTTAGACTGGGAATGAACTCCGTATGGCCTAAGCTAAACCGACAAAAACGAGCAAGCGGACCGGG
1 CTTAGACTGGGAATGAACTCCGTAT-GCCTAAGC-CAACCG------ACGAACAAG-TGAGCGGG
* *
18793361 CGGGCAGGC-ACTACCGTCGGCCCAGAGAAGGACAGGATGGCACAAGCCGT-GATCGA-AGGGTG
57 CGGGCA--CTAC-A-C--CGG-CCAGAG-A-GACGGGAT-GCGCAAGCCGTGGATCGATAGGGTG
* *
18793423 GTAGGTGGG-TTAGGCACATCTTCATTATTTCTG-ATTACCAATGCCATTTTTATGGCTTGTAAC
112 GTAGGTGGGTTTAGGCACATCTTCA-TATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAA
* * *
18793486 TTCATACCAACGGTGGTGCCTTAAGGCCTTCACGTGAAGTTTCA-GGCAAGATGACTCCATTTTC
175 TTCATA-CAA---TGGTCCCTTAA-GCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTC
* * *
18793550 TATTTTTTACGATTTTTGGAAA-TATTTTGTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
234 TATTTTTCACGATTTTT-GAAACT-TTTTG-CGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGGA
* * * *
18793614 GTTTTAGCCCCAAACTTGGTAGACGGGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG
295 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
18793679 CTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACT
360 CCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACT
*
18793743 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-AGGGGTGTGAGTTCTCA
424 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA-GGGTGTGAGTTCTCA
18793807 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
488 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
18793872 CGCACACCACCCTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCT-C--CG
553 CGCACACC-CCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GTTCTCCGGCG
* * * *
18793934 A---T-----GATGGTGCCCCGGCAAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATG
615 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * *
18793991 TGCTGTCAAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATCAACTCTGTATGCTTAGACTGG
680 TGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
*
18794056 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
745 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * **
18794121 GGCGAGATGCGCAAGCTGGGGATC-GATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCAC
810 GGCGGGATGCGCAAGC-CGGGATCAG-TAGGGTCCCCCTCTATGTGCTCCCGATCCTGCTACCAC
*
18794185 AACCCTCAGTCGGGTCTGAT
873 AACCCTCAGTCTGGTCTGAT
* * *
18794205 CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACAAATGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAC-AA---GTGAGCGGGC---
** *
18794270 TGGGCACTACGTCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
58 -GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * * *
18794335 TTAGGCACATCTTCATATTTTTGTGTGCCAAAGCAATTTTTATGGCTTGTTAATTCATACAATGG
122 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18794400 TCCCTTAAGCCTTCACGTGAATTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
187 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
18794465 AAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGATTTTTGGCCCTAAAGTTGGTA
252 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18794530 GACATGATCCTTGT-TTTTTTGTTGGCATGCAGAAAAAAATTCAGCCAAAAACTCGAAGTCTACA
316 GACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
* * * *
18794594 ATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTATTGGCAGCAAA
380 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18794659 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATAAGTGATAGGGGG
445 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
18794724 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGGCCCCCC
510 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCC
* *
18794789 CGATCGCCGGAACCCCAATGCCGTCGGTCAGATTCTCCGGCAATGCTCCGACGATGGTGCCCCGA
574 CGATCGCCGGAACCCCAATGCCGCCGGTCAG-TTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
*
18794854 CGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGG
638 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGG
** * * *
18794919 TTTGATCTTGGACTGGGAATGAACTCTGTATGCTTACACTGGGAATGGACTCTGTATGCCTAAGT
703 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * *
18794984 CAACCCATGAAATGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGATC
768 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATC
*
18795049 AGTAGGGTCCCCCTCTATGTGCTCCCGATCCTACTACCACAACCCTCAGTCTGGTCTGAT
833 AGTAGGGTCCCCCTCTATGTGCTCCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGAT
*
18795109 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A-AA-TGAGCGGGCGGGCACTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAACAAGTGAGCGGGCGGGCACTA
* *
18795171 CACCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
18795236 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
131 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18795301 CCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
196 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
18795366 GCGGTTCGGGAATTTTTAAAATTTTTTACGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGATC
261 GCGGTTCGGGATTTTTTAAAATTTTTT-CGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
18795431 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTGTG
325 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
18795496 GCCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAAT
390 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18795561 CTCAAATGCTCTTTAAGGGGGTATGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAG
455 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
18795626 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCAGA--CCCCCAGCCCCCCCGATCGCCGGA
520 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGA
* * *
18795689 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAAT
585 ACCCCAATGCCGCCGGTCA-GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
18795754 GCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTTGGTCTGATCCGGTCTTAG
649 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAG
** *
18795819 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAA
714 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * *
18795884 ACGGGCGTGTGGGCACTCAGCCGGCCAGA-GGG-GGGATGCGTAAGCC
779 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
18795930 AAGGAATGAA
Statistics
Matches: 3081, Mismatches: 340, Indels: 222
0.85 0.09 0.06
Matches are distributed among these distances:
872 3 0.00
873 6 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 402 0.13
878 218 0.07
879 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
886 1 0.00
887 15 0.00
888 3 0.00
889 217 0.07
890 3 0.00
892 450 0.15
893 8 0.00
894 53 0.02
895 260 0.08
896 19 0.01
897 40 0.01
898 21 0.01
899 1 0.00
900 14 0.00
901 22 0.01
902 57 0.02
903 171 0.06
904 113 0.04
905 191 0.06
906 2 0.00
907 11 0.00
908 13 0.00
909 281 0.09
910 61 0.02
911 18 0.01
912 10 0.00
914 21 0.01
915 38 0.01
916 13 0.00
917 269 0.09
918 7 0.00
919 4 0.00
920 38 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAACAAGTGAGCGGGCGGGCACTA
CACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAA
CCCCAATGCCGCCGGTCAGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGAC
TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCAGTAGGGTCCCCC
TCTATGTGCTCCCGATCCTGCTACCACAACCCTCAGTCTGGTCTGAT
Found at i:18796677 original size:26 final size:26
Alignment explanation
Indices: 18796641--18796693 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18796631 CCGGTCCGAT
*
18796641 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18796667 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18796693 C
1 C
18796694 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18797563 original size:26 final size:26
Alignment explanation
Indices: 18797534--18797583 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18797524 AGTCTGATCA
*
18797534 TAGACTGGGAATGAACTCCATATGGT
1 TAGACTAGGAATGAACTCCATATGGT
*
18797560 TAGACTAGGAATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCATATG
18797584 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGGT
Found at i:18798244 original size:902 final size:897
Alignment explanation
Indices: 18795931--18798472 Score: 3459
Period size: 890 Copynumber: 2.8 Consensus size: 897
18795921 GCGTAAGCCA
* * *
18795931 AGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCGTA-CGGGCGGGCAC
1 AGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCG-AGCGGGCGGGCAC
* * **
18795995 TACGCCGGCCAGAGACATGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATACA
65 TACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *** * *
18796060 CATCTTCACATTTCCACATGCCAATGCCAATTTTATGGCCTGTAAATTCATACAATGGTCCCTTA
130 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
18796125 AGCGTTCACGTGAATTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAAGTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
18796190 TTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCAAACTTGGTAGACGTTA
260 TT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGA
* * *
18796255 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCAAAGTGTACAAGATTTCG
323 TCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTG
* * *
18796320 TAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGTTACTGGCAGCAAACCTGTAAA
387 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCAAACCTGTAAA
* *
18796385 ATCTCAAATGCTGTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
452 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
** * * * * * *
18796450 AGATCCAAGTACCAGCATCCATTGCACACCATGTGTGCACAACCCCCC-GGCCCCCCGATCGTCG
517 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCTGCCCCCCCGATCGCCG
18796514 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGTGAAGAAAA
581 GAACCCCAATGCCGCCGGTCAGGTTCT-CGGCGATGCTCCGG-GATGGTGCCACGGTGAAGAAAA
* * * * *
18796579 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACACTCGGCCCGGTCCGATCTT
644 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTT
* *
18796644 ATACTGGGAATGAACTCCATATGCTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACTCACG
709 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACG
* * * * * * *
18796709 AAACGAGCGTACGTGCGCTCAACCGGCCAGAGGGGCGGGATGGCAAGCCAGGGATCGGTCGAGTC
774 AAACAAGCGTACGGGCGCTCAACCAGCCAGACGAGCGAGATGGCAAGCCAGGGATCGGCCGAGTC
* * * * *** **
18796774 CCCCGCTGCATGCCACTGTTCTTACTACTGTAACCCTCGGTCTGGTTCAATCTTAGACT
839 CCCCGCTACATGCCACCGATCCTACTACCACAACCCTCGGTCTCATTCAATCTTAGACT
* * *
18796833 AGGAATGAACT-TCGTATGCCTAAGCAAACCGACG--AA-A---------CGAGCGAGCGGGAAC
1 AGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGCGGGCGGGCAC
*
18796885 TACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 TACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18796950 CATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTA
130 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
18797015 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
18797080 TTGAGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGTTTTTTGGCCCCAAATTTGGTAGACGTGA
260 TTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGA
*
18797145 TCCTTGTATGTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
323 TCCTTGTAT-TTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTG
* * *
18797210 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGC-TACTGGTAGCAAACCTATAA
387 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGCTTACTGGCAGCAAACCTGTAA
*
18797274 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
451 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
18797339 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGCC
516 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GCCCCCCCGATCGCC
* ** *
18797404 GGAACCCTAATGCCATCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
580 GGAACCCCAATGCCGCCGGTCAGGTTCTC-GGCGATGCTCCGG-GATGGTGCCACGGTGAAGAAA
* * * *
18797469 AATATGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCA
643 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCT
* *
18797534 TAGACTGGGAATGAACTCCATATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCAC
708 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCAC
** ** * * *
18797599 GAAACAAGCGTGTGGGCGCTCAGTCAGCCAGACGAGTGAGATGCGCAAGCTAGGGATCGGCCGGG
773 GAAACAAGCGTACGGGCGCTCAACCAGCCAGACGAGCGAGATG-GCAAGCCAGGGATCGGCCGAG
* ** * * *
18797664 TCCCCCTCTATGTGCTACCGATCCTA-TGCCACAACCCTCGGTCTCA-TCTGATCTTAGACT
837 TCCCCCGCTACATGCCACCGATCCTACTACCACAACCCTCGGTCTCATTC-AATCTTAGACT
* * *
18797724 GGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAAAGAGCGGGCGGGCGGGCGGGCGGGCACT
1 AGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGCGGGCGGGCACT
** * * * *
18797789 ACATCGACCAGAGAGACGGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18797854 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCATTAA
131 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18797919 GCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTAAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
*
18797984 TGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
261 TGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18798049 CTTGTATTTTTGTTAGCGTGCACAAAAAAGTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTG
325 CTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTG
*
18798114 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGCTTACTGGCAGCAAACCTGTAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCAAACCTGTAAAAT
* * *
18798179 CTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
18798244 GGCCATGTACCAGCACCCATCGCACATAATGTGCGCACA-CCCCCTGGCCCCCTCGATCGCTGGA
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GCCCCCCCGATCGCCGGA
* **
18798308 ACCCCAATGCCGCCGGTCAGGTTCTC--CGA-----C--GATGGTGCCTCGACGAAGAAAAATGT
583 ACCCCAATGCCGCCGGTCAGGTTCTCGGCGATGCTCCGGGATGGTGCCACGGTGAAGAAAAATGT
* * * * * *
18798364 CGCACCAGCACATGCCCGGGCCCAGTATGTGCTGTCGAAACCCTCGAT-CTGATCCGATCTTAGA
648 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAG-TCCGATCTTAGA
*
18798428 CTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTAT
712 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
18798473 CATTAAGTCA
Statistics
Matches: 1446, Mismatches: 167, Indels: 66
0.86 0.10 0.04
Matches are distributed among these distances:
889 11 0.01
890 572 0.40
891 274 0.19
892 37 0.03
893 3 0.00
894 1 0.00
898 3 0.00
899 1 0.00
900 1 0.00
901 52 0.04
902 298 0.21
903 193 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
AGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
TGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGCCCCCCCGATCGCCGGAACC
CCAATGCCGCCGGTCAGGTTCTCGGCGATGCTCCGGGATGGTGCCACGGTGAAGAAAAATGTGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAG
CGTACGGGCGCTCAACCAGCCAGACGAGCGAGATGGCAAGCCAGGGATCGGCCGAGTCCCCCGCT
ACATGCCACCGATCCTACTACCACAACCCTCGGTCTCATTCAATCTTAGACT
Found at i:18798764 original size:26 final size:26
Alignment explanation
Indices: 18798735--18798787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18798725 CCGATCCGAT
18798735 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
18798761 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
18798787 C
1 C
18798788 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18799675 original size:26 final size:26
Alignment explanation
Indices: 18799639--18799691 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18799629 TCGGTCGGAT
18799639 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
18799665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
18799691 C
1 C
18799692 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18800574 original size:26 final size:26
Alignment explanation
Indices: 18800545--18800597 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18800535 CTAATCCGAT
18800545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18800571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18800597 C
1 C
18800598 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18800830 original size:906 final size:904
Alignment explanation
Indices: 18798561--18801668 Score: 4289
Period size: 903 Copynumber: 3.4 Consensus size: 904
18798551 GGGTCCCCTT
* * * * * *
18798561 CCATCACACATCATGTGCGCGCACCCCTCTAGCTCCCCCGATCGTCGGAACCCTAATGTCGTCGG
1 CCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCTAATGTCGCCGG
* * * *
18798626 TCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCGCATG
66 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
*
18798691 CCCGGGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCC
131 CCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCC
* * * *
18798756 GCATGCTTAGATTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGT
196 GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
* * * *
18798821 TCAGCCAGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
261 TCAGTCAGCCAGAAGAGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
18798886 AATCCTACTGTTGCAACCCTCAGTCCGATCTGATCTTTGACTGGGAATGAACTCCATATGCCTAA
326 GATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAA
* * *
18798951 GCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATA
391 GCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATG
* * *
18799016 CGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAA
456 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
18799081 TGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGC
521 TGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
18799146 AAGATGACTCGTTTTCTATTTTTCAGGATTTTCGAAACTTTTTGTGGTTTGGGATTTTTTAAAAT
586 AAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
18799211 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGAA-TTTTTCTTGGCATGC
651 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT-AATTTTTTTTTGGCATGC
*
18799275 AC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
715 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18799339 CATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGG
780 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18799404 TGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
845 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
18799464 CCATCACACATCATGTGCGCACACCCCCCCTAGCCCCTCCGATCGTCGGAACCCTAATGTCGTCG
1 CCATCGCACATCATGTGCGCACACCCCCCC-AGCCCCCCCGATCGTCGGAACCCTAATGTCGCCG
* ** * *
18799529 GTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
65 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACAT
* * * * *
18799594 GCCCGGGCCCATCATGTGCTGCCGTAACCCTCAGTTCGGTCGGATCTTAGACTGGGAATGAACTC
130 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTC
18799659 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
195 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * * * *
18799724 CTCAG-CAAGCCAGAGGGGCAGGATGCGCAAGTCGGGGCTCGGTCGGGTCCCCCTCTGCGTGCTG
260 CTCAGTC-AGCCAGAAGAGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* * *
18799788 CCGATCCTGCTTGCTGCAACCCTCAATCTGGTCTGATCTTAGACTGGTAATGAACTCCATGA-GC
324 CCGATCCTAC-TGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCAT-ATGC
* * * * * *
18799852 CTAAGCCAACCGATGAAATAAGCAGACGGGCGGACGAGCGGGCACTATGCCGGCCAGAGAGACGG
387 CTAAGCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGG
* * * * * * *
18799917 GATGCGCAAATCGTGGATAGATAGCGTGGTAGGTGGGTTTAGGCAGATCTCCATATTTCTACCTG
452 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
18799982 CCAATGCCATTTTAATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
517 CCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
18800047 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACCGTTCGAGATTTTTTA
582 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTA
* *
18800112 AAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTTGGC
647 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTA-ATTTTTTTTTGGC
*
18800177 ATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
711 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18800242 TCCCCGTTTCAGACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
776 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * **
18800307 AGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGAGTCAAGTAGTAGCAC
841 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
18800371 CCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGTCACCGG
1 CCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCTAATGTCGCCGG
* *
18800436 TTAAGTTCTCCGACGATGCTCCGACGATGGTGCCCC-ATCGAAGAAAAATGCGGCACCAGCACAT
66 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAT-GAAGAAAAATGCGGCACCAGCACAT
* * * * **
18800500 GCTCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTC
130 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * *
18800565 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCA
195 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* ** * ** *
18800630 CTCAGTCGGCCAGAAGAGTGGGATGCGCAGGCCGGGGATCGGTTGGGTCCCCCTCTGCATGCTGC
260 CTCAGTCAGCCAGAAGAGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC
* * * * *
18800695 TGATCCTACTGTTGCAA-CCT-ATGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCC
325 CGATCCTACTGCTGCAACCCTCA--GTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCC
** * * * *
18800758 TAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGGCACTACGACGGTCAGAGAGACAG
388 TAAGCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGC-GGGCACTACGACGGCCAGAGAGACGG
* * * *
18800823 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCACATTTCTGCATT
452 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
18800888 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCA
517 CCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18800953 TGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAAGC-TTTTACGGTTCGGGATTTTTCT
582 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTT-T
* * * * *** *
18801017 -AAATTTTTTCAGAAGGGGATTTGGCCCTAAACTCGGTAGACATGATCC-CCGTCTTTTTTTGGC
646 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTAATTTTTTTTTGGC
* * *** *
18801080 ATGCAAAAAAAAATTCATCTTCGAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTG
711 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
18801145 TCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAG
776 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
18801210 GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
841 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
18801274 CCATCGCACATCATGTGCGCACACCCCACCGGCCCCCCCGATCGTCGGATCCCCAATGTCGCCGG
1 CCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCTAATGTCGCCGG
* * * *
18801339 TCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATG
66 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
* * * * * * * * *
18801404 CCCCAGCCCAACATGTACTGCCGCAACCTTC-GATCCGGTCCGATCTTAAACTGGGAATGACCTT
131 CCCGAGCCCAGCATGTGCTGCCGTAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTC
* * * *
18801468 CGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCG
195 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * * * * *
18801533 CTCAGTCGGCTAG-AGAGGCAAGATGCGCAAGCTGGGGATCGGCCAGGTCCCCTTCTGCGTGCTG
260 CTCAGTCAGCCAGAAGA-GCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
** * * * * * * * *
18801597 TTGATCCTGCTGCCGTAACCCTCGGTCCTGTTC-GATCTTAGACCGGGAATGAACTTCGTATGCC
324 CCGATCCTACTGCTGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCC
18801661 TAAGCCAA
388 TAAGCCAA
18801669 ACTTGGTAGA
Statistics
Matches: 1950, Mismatches: 235, Indels: 40
0.88 0.11 0.02
Matches are distributed among these distances:
902 4 0.00
903 540 0.28
904 292 0.15
905 458 0.23
906 454 0.23
907 202 0.10
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (904 bp):
CCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGGAACCCTAATGTCGCCGG
TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCC
GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
TCAGTCAGCCAGAAGAGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
GATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAA
GCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATG
CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTAATTTTTTTTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
Found at i:18802090 original size:26 final size:26
Alignment explanation
Indices: 18802061--18802113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18802051 CTGGTTCAAT
*
18802061 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
18802087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18802113 C
1 C
18802114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18802986 original size:26 final size:26
Alignment explanation
Indices: 18802948--18803002 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
18802938 TGGTCTGATA
*
18802948 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
18802974 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
18803000 TTA
1 TTA
18803003 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:18804593 original size:26 final size:26
Alignment explanation
Indices: 18804557--18804606 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18804547 GTCCGATCAG
18804557 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
18804583 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
18804607 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:18806396 original size:26 final size:26
Alignment explanation
Indices: 18806367--18806419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18806357 TCGGTCCGAT
18806367 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
18806393 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18806419 C
1 C
18806420 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18806731 original size:915 final size:898
Alignment explanation
Indices: 18803846--18807476 Score: 4102
Period size: 915 Copynumber: 4.0 Consensus size: 898
18803836 GTCTGGTCCA
18803846 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--AG-AGC--G-GGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGCGGG
* * * *
18803905 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-GGAGTGCTAGGAGGG
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGG-GTGGTAGGTGGG
* * *
18803969 TTTAGGCCCATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
18804034 GTCCTTTAAGCCTTCACGTGATGTTTGATGGCAAGACGACTCGTTTTCTTTTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
18804099 AAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA-GATGTTTTGGCCCCAAACTTGG
260 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGTCCCAAACTTGG
**
18804163 TAGATGTGATCCTTGTA-TTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
324 TAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
18804227 AAGATTTTGTGACAA-TTCGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCCACTGGCAGCA
389 AAGATTTTGTGACAATTTC-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* **
18804291 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTAAT-AGTTCTTGAGGTTTGATGAGGGATAGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
18804355 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACC-CCTCGCC-CCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACCACC-CCCCGCCCC
* * *
18804418 CGATTGCCGGAACTCCAATGCCGTCGGTCAG---GTTCTCC-GACGATGCTCCTGCGATGGTGCC
580 CGATCGCTGGAACCCCAATGCCGTCGGTCAGTTCGTTCTCCAG-CGATGCT-CTGCGATGGTGCC
18804479 CCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
643 CCA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** * *
18804544 CCGGTCCGATCAGAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCGT
707 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
18804609 AAGTCAACCCACAAAACGAGCGTACGGGCGTTCAGCCGGCCAGAGGGGCGG-GATGCGTAAGCCG
772 AAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGA-GGGCGGAG-TGCGCAAGCCG
* * *
18804673 GGGATTGA-TCGGGTCCCCCTCTA-CGTGCTGTTGATCCTACTGCCACAACCCTCAGTCCGATAC
835 GGGATCGACT-GGGTCCCCCTC-AGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGAT-C
18804736 C-
897 CT
*
18804737 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCAGGCGGGCGGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GCGGGCGG-CG
* * * * *
18804802 GGCGGGTGGGCACTACGCCGGCTAGAGAGACGGCATGCACAAG-CCTGGATCGATAGAGTGGTAG
64 GGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAG
*** ** * *
18804866 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGTGATATTTATGGCTTGTAAAATCATA
125 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18804931 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGA
190 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
18804996 TTTTTGAAACTTTTTATGGTTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAA
255 TTTTCAAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAA
* * *
18805061 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGTAG
319 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18805126 TGTACAAGATTTTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACAGTTTAATGGCTACTGGC
384 TGTACAAGATTTTGTGACAATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * ** *
18805191 AGCAAACCTGTAAAATCTCAAA-GCTGC-TT-A-GGTGTGTGAGTTTTTTGAGGTTTGA-AAGGG
449 AGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAG-TTCTCAAGGTTTGATGA-GG
* *
18805251 CGATAGGAGGCCCAAGATATAAGGGCCAAGTAACCAGCA-CCATCGCAC-TC-G-GCGCGCCA--
511 -GATAGG-GGGCC-A-ATATAAGGGCCAAGT-ACCAGCACCCATCGCACATCAGTGCGCACCACC
*
18805310 -----CCCCCGATCG-TCGGAACCCCAATTGCCG-CCGTCAGTTC-TT-T-C-G-G-TG---T--
571 CCCCGCCCCCGATCGCT-GGAACCCCAA-TGCCGTCGGTCAGTTCGTTCTCCAGCGATGCTCTGC
** * * * * **
18805357 GATGGTGCCCGGGCAAAGAAAATTGAGACACCAGCAGACAT-CCTAAAGCCCAGCATGTGCTGCC
634 GATGGTGCCC-CACGAAGAAAAATGCGGCACCAGC--ACATGCC-CGAGCCCAGCATGTGCTGCC
* * * * *
18805421 GCAA-CCTTGATCTGGTTCGATCTTA-ACTGGGAA-GAACTCCGTACGCTTAGA-TGGGAATGAA
695 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * ** * * *
18805482 CTCTGCAAGCCTTAAAAAAAGTTTTTTCAACCCTTGAAACGAGCGTGGGGCCGCTCAGCTGACCA
760 CTCCGTATGCC-T-----AAG-----TCAACCCACGAAACGAGCGTGCGGCCGCTCAGCCGGCCA
** * * *
18805547 GAGGGCGGCAGATGCGCAAGATGCGGGAGTGGTC-GGGTCCCCCTC-GATGTGCTGTCGATCCTA
814 GAGGGCGG-AG-TGCGCAAGCCG-GGGA-TCGACTGGGTCCCCCTCAG-CGTGCTGTCGATCCTA
* *
18805610 CTGTCGCAACCCTCAGGTCTGAT-CT
874 CTGCCGCAACCCTCA-GTCCGATCCT
* * ** *
18805635 GATCTTAGGACTGGGAATAAACTCCGTATAGCCTAAGCCAACTGACGAAATTAGCTG-GGCGCGG
1 -ATCTTA-GACTGGGAATGAACTCCGTAT-GCCTAAGCCAACCGACGAAACGAGCAGCGG-GCGG
* * *
18805699 -TGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGTCGTGGATCGATAGGGTGGTAGGT
62 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
* *
18805763 GGGTTTACGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
18805828 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTGTTTTTCACGATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
18805893 TTCAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGG-CCCTAAACT
257 TTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCC-AAACT
* * *
18805957 TGGTAGACATGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTG
321 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
*
18806022 TACAAGATTTTTGTGACCA-TTCAAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
386 TACAAGA-TTTTGTGACAATTTCAAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18806086 AGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGAGGGAT
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* *
18806151 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACACCCCCCGG
514 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCAC-CACCCCCC-G
* * *
18806216 CCCCCAATCGCTAGAACCCCAATGTCGTCGGTCAGGTTTTTCGATGATGCTCCAGCGATGCTCTA
576 CCCCCGATCGCTGGAACCCCAATGCCGTCGGTCA-G---TTCG-T--T-CTCCAGCGATGCTCT-
* * * *
18806281 GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGGATGTGCTGCTG
632 GCGATGGTGCCCC-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
18806346 TAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAAC
696 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
18806411 TCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGTC-CTCAACCGGCCAGTGGGCAGGAG
761 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCCGCTCAGCCGGCCAGAGGGC-GGAG
* * * *
18806475 TGTGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTGTCGATCTTGCTACCGCAACCCTCA
824 TGCGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTGTCGATCCTACTGCCGCAACCCTCA
18806540 GTCCGATCCT
889 GTCCGATCCT
* *
18806550 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAAGCGGGCGAGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGGGCG-GCG
* * *
18806615 GGCGGGCACTATGCCGGCCAGAGAGACGGGAGGCGCAAGTAGTGGATCGATAGGGTGGTAGGTGG
64 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
*
18806680 GTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18806745 GGTCCCTTAAGCCTTCAGGAGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** * * *
18806810 CGAAACTTCTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTCGGTCCCAAACTTGG
259 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGG
* *
18806875 TAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAT
324 TAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
18806940 AAGATTTTGTGAGC-ATTTGAAAAAAATGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCA
389 AAGATTTTGTGA-CAATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18807004 AACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCTTTAATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
18807069 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCA-CACCCCCTGGCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACCACCCCC---CGCCC
* * * * * *
18807133 CCGATCGTTGGAACCTCAATGTCGCCGGTCAG---GTTCTCCGGCGATGCT-TCGATGATGGTGC
579 CCGATCGCTGGAACCCCAATGCCGTCGGTCAGTTCGTTCTCCAGCGATGCTCT-G-CGATGGTGC
* * ** * *
18807194 CCCGGCGAAGAAAAATGTGGCACCAGCACATGATCGAGCCCAGCATGTGCTGTCGCATCCCTCGG
642 CCC-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
18807259 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCC
706 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
18807324 TCAGTCAACCAATGAAACAAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGG-GATGCGCAAGTC
771 TAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGA-GGGCGGAG-TGCGCAAGCC
* * * * * *
18807388 GGGGACTGGTC-AGGTCCCCCTCTGCGTGCTG-CTGATCCTGA-TGCCGTAACCCTCGGTCC-AG
834 GGGGA-TCGACTGGGTCCCCCTCAGCGTGCTGTC-GATCCT-ACTGCCGCAACCCTCAGTCCGA-
*
18807449 T-TT
895 TCCT
* *
18807452 GATCTTCGATTGGGAATGAACTCCG
1 -ATCTTAGACTGGGAATGAACTCCG
18807477 GTTTGATCTT
Statistics
Matches: 2323, Mismatches: 282, Indels: 258
0.81 0.10 0.09
Matches are distributed among these distances:
885 17 0.01
886 17 0.01
887 36 0.02
888 17 0.01
889 27 0.01
891 49 0.02
892 7 0.00
893 30 0.01
894 153 0.07
895 229 0.10
896 70 0.03
897 36 0.02
898 60 0.03
899 21 0.01
900 26 0.01
901 28 0.01
902 176 0.08
903 347 0.15
904 133 0.06
905 9 0.00
906 47 0.02
907 10 0.00
910 3 0.00
912 29 0.01
913 24 0.01
914 200 0.09
915 350 0.15
916 13 0.01
917 35 0.02
918 6 0.00
919 1 0.00
920 2 0.00
922 3 0.00
923 1 0.00
924 22 0.01
925 18 0.01
926 35 0.02
927 17 0.01
928 19 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTA
GACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACAATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAGTGCGCACCACCCCCCGCCCCCGATCG
CTGGAACCCCAATGCCGTCGGTCAGTTCGTTCTCCAGCGATGCTCTGCGATGGTGCCCCACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGAGGGCGGAGTGCGCAAGCCGGGGATCGACTG
GGTCCCCCTCAGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCT
Found at i:18807299 original size:26 final size:26
Alignment explanation
Indices: 18807270--18807322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18807260 CCGATCCGAT
18807270 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18807296 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18807322 C
1 C
18807323 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18808966 original size:26 final size:26
Alignment explanation
Indices: 18808937--18808989 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18808927 CTGGTCCGAT
18808937 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
18808963 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18808989 C
1 C
18808990 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18811422 original size:872 final size:881
Alignment explanation
Indices: 18809609--18811665 Score: 2543
Period size: 872 Copynumber: 2.3 Consensus size: 881
18809599 CGCACATCAT
* *
18809609 TTGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTTTGATCTTAGACTAAG-AATGAA
1 TTGCCCGAGCCCAGCATGTGCT-TCGCAACCCTCGGTCCGGTTCGATCTTAGACT--GTAATGAA
* * *
18809673 CTCCGTATGTTTAGTCTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
63 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** * * *
18809738 GCGTTCA-ACTGGCCAAAAAGGCAGGATGCGCAAGCCAGGGATCGGTCGGTCCCCCTCTGCGTGC
128 GCGCTCAGAC-GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGTCCCCATCTGTGTGC
** * * * * *
18809802 TGTCGATCCTACTGCCGTAACCCTCGGTCCGGTCCAATCTTTGATTGGGAATGAACTCCGTATGC
192 TGTCGATCCTACTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGC
* *
18809867 CTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACAGGATC
257 CTAAGCCAACCGATGAAACGAGCGAGCGGGCA---GGGCACTACACAGGCCAGAGAGACAGGATC
* * *
18809932 TGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAA
319 TGCAAGCCGGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAA
*
18809997 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
384 TGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
18810062 AAGACGACTCGTTGTCTATTTTTCACGATTTTTGAAACTTTTTCGGCTCGGGATTTTTTAAAAAT
449 AAGACGACTC--TG-------TT----ATTTTT--AAC-TTTT---CTCAGGATTTTTTAAAAAT
* * *
18810127 TTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGACC
495 TTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGACA
* *
18810192 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
560 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCA
* *
18810257 TTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTA
625 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTA
*
18810322 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGC
690 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGC
* * *
18810387 ACAACATGTACGCACCCATCGCACACACCCCCCTGGCTCCCCGATCGCAGGAACCCCAGTGCCAC
755 ACAACATGTA-GCACCCATCGCACACACCCACC--GCTCCCCGATCGCAGGAACCCAAGTACCAC
* * * * ***
18810452 CGGTCAGGTTCTCTAGCGATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
817 CGATCAGGTTCTCGAGCGATGCTCCGACAATAGTGCCCCGACGAAGAAAAATGCAACACCAGCAC
* * ** * *
18810517 ATGCCTGAGCCCAAAATGTGCTGCTGTAACCCTCGGTCCGGTTCGATCTTAGACTGGTAATGAAC
1 TTGCCCGAGCCCAGCATGTGCTTC-GCAACCCTCGGTCCGGTTCGATCTTAGACT-GTAATGAAC
* * * *
18810582 TCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG
64 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
18810647 AGCTCAGTCGGCCAGAGGGGCGGGATTCACAAGCCAGGGATCGGTCAGGTCCCCTTCTATGTGCT
129 CGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTC-GGTCCCCATCTGTGTGCT
** * *
18810712 ACCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACACCGTATGCC
193 GTCGATCCTACTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCC
* * ** **
18810777 TAAGCCAACCGACGAAACGAGCGAGCGGGCA-GGCATTACGTAGGCCAGAGAGATGGGATGC-GC
258 TAAGCCAACCGATGAAACGAGCGAGCGGGCAGGGCACTACACAGGCCAGAGAGACAGGAT-CTGC
**
18810840 AAGCCGGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGTGTGCCAATGC
322 AAGCCGGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGC
18810905 CAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
387 CAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
18810970 ACGACTC-G-T-TTTTT-A-TTTT-TCAGGA-TTTTT-AAAATTTTTTCAGAAGGATTTTTGGCC
452 ACGACTCTGTTATTTTTAACTTTTCTCAGGATTTTTTAAAAATTTTTT-AGAAGGATTTTTGGCC
*
18811027 CCAAACTTTGT-GACCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAA
516 CCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATG-ACAAAAAAAATTCAGCTAAAAA
*
18811091 CTCAAAGTGTAC-AGATTTTGTGACCATTTGAAAAAAAAGCGTCCCTATTTCAGACACTTTAATG
579 CTCAAAGTGTACAAGATTTTGTGACCATTTG--AAAAAAGCGTCCCCATTTCAGACACTTTAATG
*
18811155 GCTACTAGCAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
642 GCTACTAGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTT
* * * * *
18811220 GATGAGGGATAGGGGGCCAATATAAAGGGCCAAGTCCCAGCACCCATCGCACATCATGT-GCGCT
706 GATGAGGGATAGGGGGCCAACAT-AAGGGCCAAGTACCAGCACCCATCGCACAACATGTAGCACC
* * *
18811284 CA-C-C-C-C-CCGACC-C-CCCCGATCGTC-GGAACCCTAAG-ACCGCCGATTAGGTTCTCCGA
770 CATCGCACACACCCACCGCTCCCCGATCG-CAGGAACCC-AAGTACCACCGATCAGGTTCT-CGA
*
18811340 -CGATGCTCCGACAATGGTGCCCCGATC-AAGAAAAATGCAACACCAGCAC
832 GCGATGCTCCGACAATAGTGCCCCGA-CGAAGAAAAATGCAACACCAGCAC
*
18811389 TTGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTTCGG-TCTGATCTTAGACTGTGAATGAA
1 TTGCCCGAGCCCAGCATGTGCT-TCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGT-AATGAA
18811453 CAT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
63 C-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** * * *
18811517 GGCGCTCAGCCGGCCAGAGGGTTGGGATGCGTAAGCC-GAGGATCGATCGGGTCCCCATCTGTAT
127 GGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGGTC-GGTCCCCATCTGTGT
* * * ** ** * * **
18811581 GTTGTCGATCTTGCTATCACAACCCTCAATCTAGTCTAATCTTAGACTTGGAATGAACTTTGTAT
190 GCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
18811646 GCCTAAGCCAACCGATGAAA
255 GCCTAAGCCAACCGATGAAA
18811666 TGAAAGGGCG
Statistics
Matches: 1005, Mismatches: 123, Indels: 78
0.83 0.10 0.06
Matches are distributed among these distances:
871 5 0.00
872 296 0.29
873 9 0.01
876 4 0.00
877 1 0.00
878 13 0.01
879 75 0.07
880 38 0.04
881 53 0.05
882 65 0.06
883 32 0.03
884 4 0.00
886 1 0.00
889 5 0.00
894 1 0.00
902 1 0.00
905 155 0.15
906 1 0.00
907 2 0.00
908 145 0.14
909 99 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
TTGCCCGAGCCCAGCATGTGCTTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGTAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGTCCCCATCTGTGTGCTGTC
GATCCTACTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
GCCAACCGATGAAACGAGCGAGCGGGCAGGGCACTACACAGGCCAGAGAGACAGGATCTGCAAGC
CGGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCAAT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCTGTTATTTTTAACTTTTCTCAGGATTTTTTAAAAATTTTTTAGAAGGATTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGACAAAAAAAATTCAGCTAAAAACTCAAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTAGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGAT
AGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTAGCACCCATCGCACACA
CCCACCGCTCCCCGATCGCAGGAACCCAAGTACCACCGATCAGGTTCTCGAGCGATGCTCCGACA
ATAGTGCCCCGACGAAGAAAAATGCAACACCAGCAC
Found at i:18811475 original size:26 final size:26
Alignment explanation
Indices: 18811436--18811488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18811426 TCGGTCTGAT
*
18811436 CTTAGACTGTGAATGAACAT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
18811462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18811488 C
1 C
18811489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18814372 original size:26 final size:26
Alignment explanation
Indices: 18814343--18814393 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18814333 CCTGTCCGAT
*
18814343 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
18814369 CTTACACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
18814394 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:18815204 original size:26 final size:26
Alignment explanation
Indices: 18815175--18815226 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18815165 CCGGTCCGAT
18815175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18815201 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18815227 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18815725 original size:26 final size:26
Alignment explanation
Indices: 18815674--18815726 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18815664 CTGGTCCGAT
* **
18815674 CTTAGACTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18815700 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18815726 C
1 C
18815727 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18816609 original size:26 final size:26
Alignment explanation
Indices: 18816571--18816623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18816561 CCGGTCCGAT
* *
18816571 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18816597 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18816623 C
1 C
18816624 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18818353 original size:26 final size:26
Alignment explanation
Indices: 18818302--18818354 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18818292 CCGGTCCGAT
* *
18818302 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18818328 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18818354 C
1 C
18818355 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18819214 original size:26 final size:26
Alignment explanation
Indices: 18819185--18819237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18819175 CCGGTCCGAT
18819185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18819211 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18819237 C
1 C
18819238 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18820399 original size:192 final size:192
Alignment explanation
Indices: 18820148--18820501 Score: 489
Period size: 192 Copynumber: 1.8 Consensus size: 192
18820138 AACGAGCGCG
* * * *
18820148 CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGTCCGGGATCGACCGGGTCCCCCTCTGCA
1 CGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGTCCGGGATCGACCGGGTCCCCCTCTACA
* * * *** *
18820213 TGTTGCCGATCTTGCTTCTGTAACCCT-TGACCTGGTCCAATCTTAGACTGGGAATGAAC-TCTG
66 TGCTGCCGATCCTGCTACCACAACCCTCAGACC-GGTCCAATCTTAGACTGGGAATGAACTTC-G
* *
18820276 TATGCCTAAGCGAACCGATGAAACAAGCGGGCGGACGGACGGGCAGGCCGGCCAGAGGGGCGTA
129 TATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGACGGGCAGGCCGGCCAGAGGGGCGTA
* **
18820340 CGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAG-CCGGGGATCGGTCGGGTCCCCCTCTAC
1 CGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGTCC-GGGATCGACCGGGTCCCCCTCTAC
* * *
18820404 GTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTTCGT
65 ATGCTGCCGATCCTGCTACCACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATGAACTTCGT
18820469 ATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
130 ATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
18820502 GCAGTACGCC
Statistics
Matches: 140, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
191 2 0.01
192 133 0.95
193 5 0.04
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (192 bp):
CGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGTCCGGGATCGACCGGGTCCCCCTCTACA
TGCTGCCGATCCTGCTACCACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATGAACTTCGTA
TGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGACGGGCAGGCCGGCCAGAGGGGCGTA
Found at i:18822072 original size:26 final size:26
Alignment explanation
Indices: 18822035--18822087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18822025 CTGATCTGAT
*
18822035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
18822061 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18822087 C
1 C
18822088 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18822780 original size:889 final size:893
Alignment explanation
Indices: 18821154--18825314 Score: 5398
Period size: 889 Copynumber: 4.6 Consensus size: 893
18821144 CCGATCCGAT
* * *
18821154 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
* * * ** **
18821219 CGGCCAGAGGGGCAGGATGCGTAAGCCCAGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT--A-----CCG--CT
** * *
18821284 GGCTGCCACAACCCTTGGTTTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAA
122 -GCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18821349 CTGACGAAACGAGTGGCCGGACGGGCAAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
186 CCGACGAAACGA---G-CGGGCGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
18821414 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAAT
247 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
18821479 GCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
312 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
18821544 AGACAACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATT
377 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * * *
18821609 TTTTCGGAAAGAGTTTT-GTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCG
442 TTTTGGGAAGGAGTTTTCG-CCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
18821673 CAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
506 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
18821738 ATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCGAATGCTCTTTAAGGGGGT
571 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * **
18821803 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGTTCCAAGTACCAGCACCCATCG
636 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * ** * *
18821868 CACATCATGGGCACTCACCCCCCGGCCCCCCCGATCATCGGAACCCTAATGCCGCCTGTCAGGTT
701 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
** * ** * *
18821933 GTTTGGCGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGC
766 GTCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
18821998 CCAGTATGTTCTGCTACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
831 CCAGCATGTGCTGCTACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18822061 CTTAGACAGGGAATGAACTCTGTATGCCTAAG-CTAACCC-TCGAAACGAGTATACGGGTGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCAT-GAAACGAGTGTGCGGGCGCTCA
* * *
18822124 GCCGGCCAGAGGGGTACGAAGCGCAAGCCGGGGATCGGTTGGGT-CCCCTCTA-C-CTGCTGCCA
64 ACCGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACCGCTGCTGCCA
** *
18822186 CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAA
129 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18822251 ACGAGCGTGCGGGCGAGCGGGCAGGTACTACGTCGGCCAGAGAGACGGGATGCACAAGCCATGGA
194 ACGAGCGGGCGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
*
18822316 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCA-TTTTATG
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
18822380 GCTTGTAAATTCATACAATGGTCCCTTCAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
324 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
18822445 TTCTATTTTTCACGAATTTTGAAACTTTTTTTGGTTCGGGATTTTTTTAAATTGTTTGGGAAGGA
389 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGA
* * * *
18822510 GTTTTCGCCACAACCTTGGTAGACGTGATCCTTGCATTTTTTTTGGTATGCACAAAAAAATTCAG
454 GTTTTCGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * ** *
18822575 CTAAAAACCCAAAGTGTACACGATTTTGTGAGAATTTGAAAAAAGTGTCCCCATTTCAGACAGTT
519 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18822640 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
18822705 CTTTGATGAGGGATAGGGAGCCAAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGT
649 GTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * ** * *
18822770 GCAC-CCCCCCGGCCCCCCCGATCGCTAGAAACTGAATGCCACCGGTCAGGTTCTCCGACGATGC
713 GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTGTCCGACGATGC
* * * *
18822834 TCCTG-CGATGGTACCCCCG-CGAAGAGAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
778 TCC-GACGATGGT-GCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * *
18822897 CTGCCGCAACCCTCTATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 CTGCTACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
**
18822950 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
* * * ** * * * *
18823015 CGACTAGAGCGGCGGGACGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACTGATCC
66 CGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTCGGGT-CCCC-C----T-CTACCG---C
* ** *** *
18823080 TACTGCCGTAACCCTCAGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
121 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18823145 CCGATGAAACGAGCGGGCGAGC-AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTA
186 CCGACGAAACGAGCGGGCGGGCGA-GCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * ** * *
18823209 AGCCATTGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGGGTTCCAATTCC
250 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18823274 ATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
315 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18823339 CGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTGCGGGA-TTTTTAAAATTTTT
380 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
18823403 TTGGAAGGAGTTTTTG-CACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCATGCACAA
445 TGGGAAGGAGTTTTCGCCA-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18823466 AAGAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGGGACCATTTGAAAAAAGTATCCCCATT
509 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18823531 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
574 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18823596 AGTTCTCGAGGTTTGATGAGTGATA-GGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCAC
639 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18823660 ATCATGTGCGCGCACCCCCCCGG-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTGT
704 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTGT
* * * * * * * *
18823724 CCGATGATGCTCCAACAATGGTGCCCCGACAAAGAAAAATGTGGCACCAGTATATGCCCAAGCCT
768 CCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * *
18823789 AGCATGTGCTGCTGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
833 AGCATGTGCTGCTACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18823850 CGTAGACTGGGAATAAATTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
* ** * * * *
18823915 CGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCA
66 CGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTCGGGT--CCC-C--C-T-CTACCG--C-
* * * * * ** * * *
18823980 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTATTCCGGGAATGAACTCCCTATACCTAAGCCAA
121 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18824045 CCAACGAAACGAGCGGGTGGGCGAGTGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
186 CCGACGAAACGAGCGGGCGGGCGA----GCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
18824110 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
247 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
18824175 GCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCA
312 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
18824240 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATT
377 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * * * *
18824305 TTTTTGGTAGGAGTTTTTGCCCCAAACTTGGCAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
442 TTTTGGGAAGGAGTTTTCGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
18824370 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
507 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
18824435 TTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
572 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18824499 TGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAATACCATCACCCATCGC
637 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18824564 ACATCATGTGCGCACACCCCCCGGCCCACCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTA
702 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTG
* * * * *
18824629 TCCGACTATGATCCGACGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACATGCTCGAGCC
767 TCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
18824694 CAGCATGTGCTGCCGACAACCCTCGATCT-ACTCTGATCTTAGACTGGGAATGAACTCCGTATG
832 CAGCATGTGCTG-CTACAACCCTCGATCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
18824757 CTTAGACTGGGAATGAACTCCATATGCCTAAG-CTAACCC-TCGAAACGAGTGTGCGGGTGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCAT-GAAACGAGTGTGCGGGCGCTCA
* *
18824820 ACCGGCCAGAGGGGTACGAAGCGCAAGCCAGGGATCGG-CTGGGT-CCCCTCTACCTGCTGCCAA
64 ACCGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACC-GCTG----
**
18824883 TCCTTCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
123 -----CTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
18824948 CAACCGACGAAACGAGCGTGCGGGCGAGCGGGCAGGTACTACGTCGGCCAGAGAGATGGGATGCG
183 CAACCGACGAAACGAGCGGGCGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * *
18825013 CAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACACCTGCATATTTCTCCATGCCAATG
248 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
18825078 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAA
313 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * ** * *
18825143 GACGACTCGTTTTCTATTTTT-TTGAATTTTGAAACTTTTTTTGGTTCAGGATTTTTTAAAATTG
378 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * * * * *
18825207 TTTGGGAAGGAGTATTCACCACAACCTTGGTAGATGTGATCCTTGCATTTTTTTTGGCATGCACA
443 TTTGGGAAGGAGTTTTCGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18825272 AAAAAATTCAGCTAAAAACCCAAAGTGTACACGATTTTGTGAC
508 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
18825315 ATGCTCGAGC
Statistics
Matches: 2833, Mismatches: 365, Indels: 118
0.85 0.11 0.04
Matches are distributed among these distances:
889 544 0.19
890 156 0.06
891 4 0.00
892 1 0.00
894 68 0.02
895 2 0.00
896 1 0.00
897 5 0.00
898 2 0.00
899 52 0.02
900 311 0.11
901 297 0.10
902 403 0.14
903 106 0.04
904 205 0.07
905 135 0.05
906 325 0.11
907 216 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
CGGCCAGAGGGGCACGAAGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACCGCTGCTGCCACA
ACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGT
TTTCGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTGTCCGACGATGCTCC
GACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
ACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18822953 original size:26 final size:26
Alignment explanation
Indices: 18822924--18822976 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18822914 CCGGTCTGAT
18822924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18822950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18822976 C
1 C
18822977 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18823862 original size:26 final size:26
Alignment explanation
Indices: 18823826--18823876 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18823816 GGTCTGATCT
*
18823826 TAGACTGGGAATGAACTT-CGTATGCG
1 TAGACTGGGAAT-AAATTCCGTATGCG
18823852 TAGACTGGGAATAAATTCCGTATGC
1 TAGACTGGGAATAAATTCCGTATGC
18823877 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAATTCCGTATGCG
Found at i:18824760 original size:26 final size:26
Alignment explanation
Indices: 18824731--18824783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18824721 CTACTCTGAT
*
18824731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18824757 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18824783 C
1 C
18824784 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18825400 original size:26 final size:26
Alignment explanation
Indices: 18825362--18825414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18825352 CCAGTCTGAT
*
18825362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18825388 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18825414 C
1 C
18825415 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18825886 original size:620 final size:626
Alignment explanation
Indices: 18824681--18825934 Score: 1595
Period size: 620 Copynumber: 2.0 Consensus size: 626
18824671 CGGCACCAGC
*
18824681 ACATGCTCGAGCCCAGCATGTGCTGCCGACAACCCTCGATCTACTCTGATCTTAGACTGGGAATG
1 ACATGCTCGAGCCCAGCATGTGCTGCCGACAACCCTCGATCCACTCTGATCTTAGACTGGGAATG
* *
18824746 AACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCTAACCCTCGAAACGAGTGTGC
66 AACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGTGTGC
* * * * *
18824811 GGGTGCTCAACCGGCCAGAGGGGTACGAAGCGCAAGCCAGGGATCGGCTGGGTCCCCTCTACCTG
131 AGGCGCTCAACCGACCAGAGGCGTACGAAGCGCAAACCAGGGATCGGCTGGGTCCCCTCTACCTG
* * *** *
18824876 CTGCCAATCCTTCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
196 CTACCAATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATG
* *
18824941 CCTAAGCCAACCGACGAAACGAGCGTGCGGGCGAGCGGGCAGGTACTACGTCGGCCAGAGAGATG
261 CCTAAGCCAACCGACGAAACGA--G-GCGGGCGAGCGGGC--G-ACTACGCCGGCCAGAGAGACG
*
18825006 GGATGCGCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACACCTGCATATTTCTCCAT
320 GGATGCGCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACACCTGCATATTTCTCCAG
* *
18825071 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTC
385 GCCAATGCCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAAGTGAAGTTTC
* ** * ** *
18825136 ATGGCAAGACGACTCGTTTTCTATTTTTTTGAATTTTGAAACTTTTTTTGGTTCAGGATTTTTTA
450 ATGGCAAGACGACTCATTTTCTATTTTTACGAATTTTAAAACTTTTTGCGGTGCAGGATTTTTTA
* * * ** *
18825201 AAATTGTTTGGGAAGGAGTATTCACCACAACCTTGGTAGATGTGATCCTTGCATTTTTTTTGGCA
515 AAATTGTTTCGGAAAGAGTATTCACCACAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCA
*
18825266 TGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACACGATTTTGTG
580 TGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTG
* *
18825313 ACATGCTCGAGCCCAGCATGTGCTGCCG-CAACCCTCTATCCAGTCTGATCTTAGACTGGGAATG
1 ACATGCTCGAGCCCAGCATGTGCTGCCGACAACCCTCGATCCACTCTGATCTTAGACTGGGAATG
*
18825377 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGTGTG
66 AACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCT-AACCCACGAAACGAGTGTG
* * * * * * * *
18825441 TAGGCGTTCAATCGACTAGA-GCG-ACGGGATGCG-ATAATCGGGGATC-GATCGGGTGCCCCTC
130 CAGGCGCTCAACCGACCAGAGGCGTAC--GAAGCGCA-AACCAGGGATCGGCT-GGGT-CCCCTC
*** ** ** *
18825502 TGTGTGCTACTGATCCTGCTGCCGTAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTC
190 TACCTGCTACCAATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACTAGGAATGAACTC
*
18825567 CGTATGCCTAAGCCAACCGACGAAACGA-GC-GG-G-GCGGGC-ACTACGCCGGTCAGAGAGACG
255 CGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGAGCGGGCGACTACGCCGGCCAGAGAGACG
* * * * * * * *
18825627 GGATGTGTAAGCCATTGATCGATAAGG-TGGTTGGTGGGTTTAGGTACATCTTCATATTT-T-TA
320 GGATGCGCAAGCCATGGATCGAT-AGGTTGGTAGGTGGGTTTAGGCACACCTGCATATTTCTCCA
* *
18825689 GGTCCAATTCCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTT
384 GG-CCAATGCCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAAGTGAAGTT
* *
18825754 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTGCGGGA-TTT
448 TCATGGCAAGACGACTCATTTTCTATTTTT-ACGAATTTTAAAACTTTTTGCGGTGCAGGATTTT
* * * *
18825818 TTAAAATTTTTTCGGAAAGAGT-TTTATCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
512 TTAAAATTGTTTCGGAAAGAGTATTCA-CCACAAACTTGGTAGACATGATCCTTGCATTTTTGTT
* * * *
18825882 GGCATGCACAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGATTTTGTG
576 GGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTG
18825933 AC
1 AC
18825935 CTTTTGAAAA
Statistics
Matches: 539, Mismatches: 73, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
619 5 0.01
620 189 0.35
621 88 0.16
622 3 0.01
625 6 0.01
626 1 0.00
627 2 0.00
628 2 0.00
629 2 0.00
630 6 0.01
631 122 0.23
632 113 0.21
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (626 bp):
ACATGCTCGAGCCCAGCATGTGCTGCCGACAACCCTCGATCCACTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGTGTGC
AGGCGCTCAACCGACCAGAGGCGTACGAAGCGCAAACCAGGGATCGGCTGGGTCCCCTCTACCTG
CTACCAATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGGCGGGCGAGCGGGCGACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACACCTGCATATTTCTCCAGGCCAAT
GCCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCA
AGACGACTCATTTTCTATTTTTACGAATTTTAAAACTTTTTGCGGTGCAGGATTTTTTAAAATTG
TTTCGGAAAGAGTATTCACCACAAACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTG
Found at i:18827983 original size:888 final size:873
Alignment explanation
Indices: 18826222--18828236 Score: 2523
Period size: 888 Copynumber: 2.3 Consensus size: 873
18826212 GTCCAATCTC
* *
18826222 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTTGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGATGG
* * * *
18826287 CGAGAGGGGCGGGATGCACAAGCCGGCGATCGGCAGGGTCCCCCTCTGCGTACTGCCAATCTTGC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
* * * * * * * *
18826352 TGCCATAACTCTCATTCCAGT-TCAATCTTAGACTAGGAATGAACTCCGTATCCCTAACCCAACC
131 TGCCACAACCCTCA-TCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
* * * * *
18826416 GACGAAACGA---GAGGGC--G-GGCAGGCACTACGTCGGCCAGAGAGACGGGATGGCAAGTCGT
194 GACGAAACGAGCGGCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGGCAAGCCAT
*
18826475 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTA
259 GATCGATAGGGTGGTAGGTGGGTTTAGG-ACATCTTAATATTTCT-CAAGCCAATGCCATTTTTA
* *
18826540 TGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCTTGGAAAGACGACTCG
322 TGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCG
* * * **
18826605 TTTTCTCTTTTTCACGATTTTTGAAACTTTTTGCGGTTGAGATTTTTTAAAATTTTTTCGGAAGG
387 TCTTCTCTATTTCACGAATTTCCAAACTTTTTGCGGTTGAGATTTTTTAAAATTTTTTCGGAAGG
18826670 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGCACAAAAAAATTCA
452 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGCACAAAAAAATTCA
* *
18826735 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTTCAGACAC
517 GCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAATAGTATCCCCATTTTCAGACAC
**
18826800 TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAATATACTCTTTAAGGGGTGTGAGTTCTTG
582 TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAATATACTCTTTAAGGGGTGTGAGTTCTCA
**
18826865 AGGTTTGATGAGGGATAGGGGGCCCAATATAAGGGCCATGTACCAGCACCCATCGCACTCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCCAATATAAGGGCCAAATACCAGCACCCATCGCACTCATGTG
** * * *
18826930 CGCACAGTCCCCCGGCCCCCCCCAATCTTCGGAACCTAATGCCCTCGTCAGGTTCTCCGGTGATG
712 CGCACA--CCCCCGG-CCCCCCCAATCACCGGAACCCAATG-CCTCG-CA-G---TACGATGA-G
* * * ** ** * *
18826995 TGCCCGACGAAGAAAAATGCGGCGCCAGCACATGCCCGAGCCTAGTATGTGCTGTCGCAACCCTT
767 TGCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCTC
*
18827060 GGTCCAGTCCGATCTTGGACTGGGAATGAACTCTGTACGCTT
832 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTT
* * *
18827102 AGACTGGGAATGAACTCCATATG-CTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGATGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGATGG
* *
18827166 CCA-AGGGGCGGGATGCACAAGCCGGGGATCGGTC-GGGTCCCCCTTCTGCGTGTTGCAAAATCC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGG-CAGGGTCCCCC-TCTGCGTGCTGC-CAATCC
*
18827229 TGCTGGCCACAACCCTCATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
128 TGCT-GCCACAACCCTCATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC-A
*
18827294 ACCGACGAAACGAGCGGGGCGGGCGGGCTGGCGGGCACTACGCCCAGCCAGAGAGACGGGATGCG
191 ACCGACGAAACGAGC--GGCGGGCGGG-TGGCGGGCACTACG-CCGGCCAGAGAGACGGGATG-G
* * *
18827359 TAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG-CATCTTAATATTTCT-ATGTGCAATGC
251 CAAGCCAT-GATCGATAGGGTGGTAGGTGGGTTTAGGACATCTTAATATTTCTCAAG-CCAATGC
*
18827422 CATTTTTATGGCTTGT-AATTCATACAATGCT-CCTTAAGCC-TCACATGAAGTTTCATGGCAAG
314 CATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAG
* *
18827484 ACGACTCG-CTT-TCTATTT-GCGTAATTTCCAAAGTTTTTGCGGCTTCGAGATTTTTTAAAATT
379 ACGACTCGTCTTCTCTATTTCACG-AATTTCCAAACTTTTTGCGG-TT-GAGATTTTTTAAAATT
18827546 TTTTCGGAAAGGTGGTTTTGGGCCCC-AACTTGGTAGACGTGATCCATTGTATTTTTTTTTTCG-
441 TTTTCGG-AAGGT-GTTTT-GGCCCCAAACTTGGTAGACGTGATCC-TTGTA--TTTTTTTT-GA
*
18827609 CATGCACAAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGATTTTGGGAACCATTTTGAAAA-A
499 AATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGG-ACCA-TTTGAAAATA
* * *
18827672 GATATCCCCATTTTCCCCCCCCCCTGACACTTTAATGGCTAACTGGCAGCAAACTTGTAAAATCT
562 G-TATCCCCATTTT---------CAGACACTTTAATGGCT-ACTGGCAACAAACCTGTAAAATCT
* *
18827737 CAA-ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGG-CCAATATAAG
616 CAATATACTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCCAATATAAG
* *
18827800 GGCCAAATACCAGCACCCATCGCACATCATGTGCGCACA-CCCCGG-TCCCCCGATCACCGGAAC
680 GGCCAAATACCAGCACCCATCGCAC-TCATGTGCGCACACCCCCGGCCCCCCCAATCACCGGAA-
**
18827863 CCCAATG-CTC-C-G-ACGATG-GTGCCCCGACAAAGAAAAATTTGGCACCAGCACATGCCCGAG
743 CCCAATGCCTCGCAGTACGATGAGTG-CCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
18827923 CCCAACATGTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
807 CCCAACATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACGC
18827988 TT
872 TT
* **
18827990 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGGCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGATGG
* * * * *
18828055 CCAGAGGGGTGGGATGCATAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCAATCCTGC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
* * *
18828120 TGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCG
131 TGCCACAACCCTC-ATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCG
*
18828185 ACGAAACGAGCGAGCGGGCGGGT---GGGCACTATGCCGGCCAGAGAGACGGGAT
195 ACGAAACGAGCG-GCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
18828237 NNNNNNNNNN
Statistics
Matches: 992, Mismatches: 92, Indels: 101
0.84 0.08 0.09
Matches are distributed among these distances:
878 37 0.04
879 50 0.05
880 66 0.07
881 44 0.04
882 9 0.01
884 2 0.00
885 24 0.02
886 18 0.02
887 80 0.08
888 179 0.18
889 95 0.10
890 80 0.08
891 50 0.05
892 48 0.05
893 49 0.05
895 1 0.00
897 3 0.00
898 13 0.01
899 6 0.01
900 6 0.01
902 59 0.06
903 73 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (873 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGATGG
CCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
TGCCACAACCCTCATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGGCAAGCCATGA
TCGATAGGGTGGTAGGTGGGTTTAGGACATCTTAATATTTCTCAAGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCGTCTT
CTCTATTTCACGAATTTCCAAACTTTTTGCGGTTGAGATTTTTTAAAATTTTTTCGGAAGGTGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAATAGTATCCCCATTTTCAGACACTTTA
ATGGCTACTGGCAACAAACCTGTAAAATCTCAATATACTCTTTAAGGGGTGTGAGTTCTCAAGGT
TTGATGAGGGATAGGGGGCCCAATATAAGGGCCAAATACCAGCACCCATCGCACTCATGTGCGCA
CACCCCCGGCCCCCCCAATCACCGGAACCCAATGCCTCGCAGTACGATGAGTGCCCGACAAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCTCGGTCCAGTCCGATC
TTAGACTGGGAATGAACTCTGTACGCTT
Found at i:18827990 original size:26 final size:26
Alignment explanation
Indices: 18827961--18828013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18827951 CCGGTCTGAT
*
18827961 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18827987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18828013 C
1 C
18828014 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18830136 original size:26 final size:26
Alignment explanation
Indices: 18830100--18830152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18830090 CCGGTCCGAT
*
18830100 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18830126 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18830152 C
1 C
18830153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18831029 original size:26 final size:26
Alignment explanation
Indices: 18830993--18831042 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18830983 GGTCTGATCA
*
18830993 TAGACTGGGAATGAACTCCATATGGT
1 TAGACTAGGAATGAACTCCATATGGT
*
18831019 TAGACTAGGAATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCATATG
18831043 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGGT
Found at i:18831944 original size:912 final size:900
Alignment explanation
Indices: 18829394--18832001 Score: 3616
Period size: 888 Copynumber: 2.9 Consensus size: 900
18829384 GCGTAAGCCA
* *
18829394 AGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCGTA-CGGGCGGGCAC
1 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCG-AGCGGGCGGGCAC
* *
18829458 TACGCCGGCCAGAGACATGGGATACGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTATA--
65 TACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-TAGG
* * * *
18829520 CACATCTTCACA-TTTCCACATGCCAATGCCAATTTTATGGCCTGTAAATTCATACAATGGTCCC
129 CACATCTTCATATTTTTC-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18829584 TTAAGCGTTCACGTGAA-TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAAG
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
* *
18829648 TTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCAAACTTGGTAGACG
258 TTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTGGCCCCAAACTTGGTAGACG
* * *
18829713 TTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCAAAGTGTACAAGATT
321 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATT
* * *
18829778 TTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGTTACTGGCAGCAAACCTGT
386 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCAAACCTGT
* *
18829843 AAAATCTCAAATGCTGTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
451 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * * *
18829908 ATAAGATCCAAGTACCAGCA-CCATTGCACA-CATGTGTGCACAACCCCCCGGCCCCCCGATCG-
516 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCTGGCCCCCCGATCGC
18829970 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGTGAAGA
580 T-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGTGAAGA
* * * *
18830035 AAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACACTCGGCCCGGTCCGA
644 AAAATGTC-GCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
* *
18830099 TCTTATACTGGGAATGAACTCCATATGCTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACT
708 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACT
* * * * * * * *
18830164 CACGAAACGAGCGTACGTGCGCTCAACCGGCCAGAGGGGCGGGATGGCAAGCCAGGGATCGGTCG
773 CACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGACGAGCGAGATGGCAAGCCAGGGATCGGCCG
* * * * *
18830229 AGTCCCCCGCTGCATGCCACTGTTCTTACTACTGTAACCCTCGGTCTGGTTCAATCTTAGACT
838 AGTCCCCCGCTGCATGCCACCGATCCTACTACTGCAACCCTCGGTCTCGTTCAATCTTAGACT
* * * *
18830292 AGGAATGAACTTCGTATGCCTAAGCAAACCGACG--AA-A---------CGAGCGAGCGGGAACT
1 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGCGGGCGGGCACT
*
18830345 ACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCA
66 ACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTAGGCA
* * * *
18830409 CATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTA
131 CATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
18830474 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
18830539 TTGAGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTTTTTTGGCCCCAAATTTGGTAGACGTGA
261 TTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGA
*
18830604 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
324 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTG
* * *
18830669 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGC-TACTGGTAGCAAACCTATAA
389 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGCTTACTGGCAGCAAACCTGTAA
*
18830733 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18830798 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGCC
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCT-GGCCCCCCGATCGCT
* ** * * *
18830863 GGAACCCTAATGCCATCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
581 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGTGAAGAAA
* * * *
18830928 AATATGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCA
646 AATGTCGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
* *
18830993 TAGACTGGGAATGAACTCCATATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCAC
711 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCAC
* * ** *
18831058 GAAACGAGCGTGTGGGCGCTCAGTCAGCCAGACGAG-GAGATGCGCAAGTTAGGGATCGGCCGGG
776 GAAACGAGCGTGCGGGCGCTCAGCCAGCCAGACGAGCGAGATG-GCAAGCCAGGGATCGGCCGAG
* * * * *
18831122 TCCCCCTCTGCGTGCTACCGATCCTA-TGCTGCAACCCTCGGGTCTCG-TCTGATCTTAGACT
840 TCCCCCGCTGCATGCCACCGATCCTACTACTGCAACCCTC-GGTCTCGTTC-AATCTTAGACT
* * *
18831183 GGGAATGAACTCCGTATGCCCTAAGCCAACCAACGAAAAGAGCGGGCGGGCGGGCGGTGGGCGGG
1 AGGAATGAACTCCGTATG-CCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGC---GGGCGGG
** * * * *
18831248 CACTACATCGACCAGAGAGACGGGATGGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTT
62 CACTACGCCGGCCAGAGAGACGGGAT-ACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTT
*
18831313 AGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGGT
126 AGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GGT
18831378 CCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
190 CCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
*
18831443 AAACTTTTTGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
254 AAACTTTTTGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAG
* * *
18831508 ACAG-GATCCTTGTATTTTTGTTGGCGTGCACAAAAAAGTTCAGCCAAAAACTTCGAAGTGTACA
318 AC-GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAAC-TCGAAGTGTACA
18831572 AGATTTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCA
381 AGA-TTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCA
*
18831637 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
444 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
18831702 GGCCAGTATAAGGGCCATGTACTAGCACCCATCGCACATAATGTGCGCACACGCCCTGGCCCCCT
509 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC-
* * *
18831767 CGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGG
573 CGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGG
* * * * * * *
18831832 TGAAGAAAAATGTCGCACCAGCACAAGCTCGGGCCCAGTATGTGCTGTCGAAACCCTCGATCTGA
638 TGAAGAAAAATGTCGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
* * **
18831897 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTTCGTATTACTAAGT
703 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18831962 CAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGA
768 CAACTCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
18832002 GGGGTGGGAT
Statistics
Matches: 1504, Mismatches: 162, Indels: 74
0.86 0.09 0.04
Matches are distributed among these distances:
885 3 0.00
886 53 0.04
887 80 0.05
888 302 0.20
889 11 0.01
890 33 0.02
891 285 0.19
892 14 0.01
894 2 0.00
895 2 0.00
896 1 0.00
898 31 0.02
904 4 0.00
907 28 0.02
908 31 0.02
909 59 0.04
910 101 0.07
911 89 0.06
912 227 0.15
913 148 0.10
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGAGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTAGGCA
CATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
TTGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCTTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCTGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGGTGAAGAAAAATGT
CGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAC
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAAC
GAGCGTGCGGGCGCTCAGCCAGCCAGACGAGCGAGATGGCAAGCCAGGGATCGGCCGAGTCCCCC
GCTGCATGCCACCGATCCTACTACTGCAACCCTCGGTCTCGTTCAATCTTAGACT
Found at i:18832307 original size:312 final size:312
Alignment explanation
Indices: 18831730--18832312 Score: 846
Period size: 312 Copynumber: 1.9 Consensus size: 312
18831720 GTACTAGCAC
* * * **
18831730 CCATCGCACATAATGTGCGCACACGCCCTGGCCCCCTCGATCGCTGGAACCCCAATGCCGCCGGT
1 CCATCACACATAATGTGCGCACACCCCCTAGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGT
* * *
18831795 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGTCGCACCAGCACAAGC
66 CAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTCGCACCAGCACAAGC
* * *
18831860 TCGGGCCCAGTATGTGCTGTCGAAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCA
131 CCGGGCCCAGCATGTGCTGCCGAAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCA
* * * *
18831925 TATGCTTAGAATGGGAATGAACTTCGTATTACTAAGTCAACCCACAAAACGAGCATGCGGGCGCT
196 CATGCTTAGAATGGGAATGAACTTCATATGACTAAGTCAACCCACAAAACAAGCATGCGGGCGCT
18831990 CAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGAAAATTCGTCGGGACCCCTT
261 CAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGAAAATTCGTCGGGACCCCTT
* * * *
18832042 CCATCACACATCATGTGCGCACACCCCTCTAGCCCCC-CGATCGCCAGAACCCTAATGTCGTCGG
1 CCATCACACATAATGTGCGCACACCCC-CTAGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGG
* * *
18832106 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCGCATG
65 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTCGCACCAGCACAAG
* * * *
18832171 CCCGGGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTC
130 CCCGGGCCCAGCATGTGCTGCCGAAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCC
* * * ** *
18832236 GCATGCTTAGACTGGGAATGAA-TTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCG
195 ACATGCTTAGAATGGGAATGAACTT-CATATGACTAAGTCAACCCACAAAACAAGCATGCGGGCG
18832300 CTCAGCCAGCCAG
259 CTCAGCCAGCCAG
18832313 CCAGAGGGGC
Statistics
Matches: 237, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
311 2 0.01
312 227 0.96
313 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (312 bp):
CCATCACACATAATGTGCGCACACCCCCTAGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGT
CAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTCGCACCAGCACAAGC
CCGGGCCCAGCATGTGCTGCCGAAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCA
CATGCTTAGAATGGGAATGAACTTCATATGACTAAGTCAACCCACAAAACAAGCATGCGGGCGCT
CAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGAAAATTCGTCGGGACCCCTT
Found at i:18833161 original size:26 final size:26
Alignment explanation
Indices: 18833123--18833175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18833113 TCGGTCAGAT
18833123 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
18833149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
18833175 C
1 C
18833176 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:18833947 original size:11 final size:11
Alignment explanation
Indices: 18833933--18833969 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
18833923 GTTCTCCGAT
*
18833933 GATGATCCGGC
1 GATGCTCCGGC
18833944 GATGCTCCGGC
1 GATGCTCCGGC
18833955 GATGCTCCGGC
1 GATGCTCCGGC
18833966 GATG
1 GATG
18833970 GTGCCCCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.19
Consensus pattern (11 bp):
GATGCTCCGGC
Found at i:18833952 original size:22 final size:22
Alignment explanation
Indices: 18833926--18833969 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18833916 CGGCTAAGTT
*
18833926 CTCCGATGATGATCCGGCGATG
1 CTCCGACGATGATCCGGCGATG
* *
18833948 CTCCGGCGATGCTCCGGCGATG
1 CTCCGACGATGATCCGGCGATG
18833970 GTGCCCCATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (22 bp):
CTCCGACGATGATCCGGCGATG
Found at i:18834078 original size:25 final size:26
Alignment explanation
Indices: 18834050--18834101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834040 CTGATCCGAT
18834050 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18834075 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18834101 C
1 C
18834102 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18834748 original size:923 final size:897
Alignment explanation
Indices: 18832042--18835170 Score: 3952
Period size: 904 Copynumber: 3.4 Consensus size: 897
18832032 GGGACCCCTT
* ** * *
18832042 CCATCACACATCATGTGCGCACACCCCTCTAG-CCCCCCGATCGCCAGAACCCTAATGTCGTCGG
1 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
** ** *
18832106 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCGCATG
66 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
* * * *
18832171 CCCGGGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTC
131 CCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
18832236 GCATGCTTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGC
196 GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
* *
18832301 TCAGCCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC
261 TCAGCCAG---G-CAGA-GGGC-GGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGC
* *
18832366 TGCCAATCCTACTGCTGCAACCCTCAGTCCGATCTGATCTTTGACTGGGAATGAACTCCATATGC
319 TGCCGATCCTACTGCTGCAACCCTCAGTCCGATCTGATCTTAGACT-GGAATGAACTCCATATGC
* * *
18832431 CTAAGCCAACCGATGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
383 CTAAGCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGG-CAGAGAGACAG
* * * *
18832496 GATACGT--AAGTCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTG
447 G--ACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* * *
18832559 TGCCAATGCCATTTTCATGGCTTTTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTT
510 TGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
***
18832624 CATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTT
575 CATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTT
*
18832689 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGA-ATTTTTCTTG
640 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT-ATATTTTTCTTG
18832753 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
704 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
18832818 TGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCCTTA
769 TGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT-CTTA
*
18832883 AGGGGGTGTGAGTTCTAGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
833 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
18832948 C
897 C
* ** * *
18832949 GCATCACACATCATGTGCGCACACCCCCCTAGCCCCTCCGATCGTTGGAACCCTAATGTCGTCGG
1 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
* * **
18833014 TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
66 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
* * * * *
18833079 CCCGGGCCCAGCATGTGCTGCCCTAACCCTCAGTTC-GGTCAGATCTTAGACTAGGAATGAACTC
131 CCCGAGCCCAGCATGTGCTGCCGTAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTC
18833143 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
195 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * * * ** *
18833208 CTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGCTCGGTCAGGTCCCTTTCTGTGTGCTGC
260 CTCAGCCAGGCAGA-GGGC-GGATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * * * *
18833273 CGATCCTGCTACTGTAACCCTCAATCTGGTCTGATCTTAGACTGGTAATGAACTCCATGTGCCTA
322 CGATCCTACTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGG-AATGAACTCCATATGCCTA
* * * * *
18833338 AGCCAACCGACGAAATAAGCAGACGGGCGGACGGGCGGGCACTATGCCGGCTAGAGAGACAGGAT
386 AGCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGGC-AGAGAGACAGGAC
* * * * * *
18833403 GCGCAAACCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACCTGCCA
450 GTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* * *
18833468 ATGCAATTTTAATGGCTTGGAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
515 ATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** *
18833533 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACCGTTCGAGATTTTTTAAAA
580 CAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAA
* * ** *
18833598 TTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTATATTTTTTTTTGGCATG
645 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTATA-TTTTTCTTGGCATG
* * *
18833663 CACAGAAAAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCC
709 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* **
18833728 CCATTTCAGACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAAGG
774 CCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGG
* * **
18833793 GTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGAGTCAAGTAGTAGCAC
838 GTGTGAGTTCTCGAGGTTTGATGAG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
18833854 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCTTAATGTCGCCGG
1 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGTC-G
*
18833919 CTAAGTTCTCCGATGATGATCCGGCGATGCTCCGGCGATGCTCCGGCGATGGTGCCCC-ATCGAA
65 ----G---T-C-A-G--G-T-------T-CTCCGACGATGCTCCGGCGATGGTGCCCCGAT-GAA
* * * * * *
18833983 GAAAAATACGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGTCGAAACCCTCGGTCTGATCCG
108 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCG
* *
18834048 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAC
173 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
18834112 CCATGAAATGAGCGTGCGGACGCGCTCAGTC-GGCAGAGGTG-GGATGCGCAAGCCGGGATCAGT
238 CCATGAAACGAGCGTGCGG--GCGCTCAGCCAGGCAGAGG-GCGGATGCGCAAGCCGGGATCGGT
* ** * * *
18834175 TGGGTCCCCCTCTGCACGCTACTGATCCTACTGCTGCAA-CCT-ATGGTCCGATCCGATCTTAGA
300 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCA--GTCCGATCTGATCTTAGA
** *
18834238 CTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCGGGCGGGGC
363 CT-GGAATGAACTCCATATGCCTAAGCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGC-GGGC
*
18834303 ACTACGACGGTCAGAGAGACAGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGG
426 ACTACGACGG-CAGAGAGACAGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
18834368 CACATCTTCACATTTTTGCGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCT
490 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
18834433 TAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTGATGATTTTTGAAGC-
555 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
18834497 TTTTACAGTTCGGGATTTTTCT-AAATTTTTTCAGAAGGGGATTTGGCCCTAAACTCGGTAGACA
620 TTTTACAGTTCGAGATTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * * * * ** *
18834561 TGATCCCTATCTTTTTGTTGGCATGCAAAAAAAAATTCATCTTCAAACTCAAAGTGTACAAGATT
684 TGATCCTTATATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18834626 TTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
749 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
*
18834691 AAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGTGATAGGGGGCCAAT
814 AAAATCTCAAATGCTCTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GATAGGGGGCCAAT
18834756 ATAAGGGCCAAGTACCAGCAC
877 ATAAGGGCCAAGTACCAGCAC
* * *
18834777 CCATCACACATCATGTGCGCACACCCCACCGGCCCCCCCGATCGTCGGATCCCCAATG-CGTCGG
1 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
* *
18834841 TCAGGTTCTCCGACGATGCTTCGAG-GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACAT
66 TCAGGTTCTCCGACGATGCTCCG-GCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACAT
* ** * * * *
18834905 GCCCGAGCCCAGCATGTACTATCGTAACCTTCGATCCGGTCCGATCTTAAACTGGGAATGACCTC
130 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTC
* * *
18834970 CGTATGCTTAGATTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
195 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* ** * * *
18835035 CTCAGCC-GGCTAGAGAGGCGAGATGCGCAAGCTGGGGATCGACCAGGTCCCCTTCTGTGTGCTG
260 CTCAGCCAGGC-AGAG-GGCG-GATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * * * * * *
18835099 TCGATCCTGCTGCCGTAACCCTCGGTCTGGT-TCGATCTTAGATCAGGAATGAACTCCGTATGCC
321 CCGATCCTACTGCTGCAACCCTCAGTCCGATCT-GATCTTAGA-CTGGAATGAACTCCATATGCC
18835163 TAAGCCAA
384 TAAGCCAA
18835171 ACTTGGTAGA
Statistics
Matches: 1922, Mismatches: 243, Indels: 118
0.84 0.11 0.05
Matches are distributed among these distances:
899 12 0.01
900 98 0.05
901 73 0.04
902 13 0.01
903 77 0.04
904 370 0.19
905 243 0.13
906 2 0.00
907 30 0.02
908 214 0.11
909 4 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 2 0.00
914 2 0.00
915 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
919 1 0.00
921 1 0.00
922 6 0.00
923 237 0.12
924 162 0.08
925 185 0.10
926 78 0.04
927 96 0.05
928 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCC
GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
TCAGCCAGGCAGAGGGCGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
CCTACTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGCCA
ACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGACGGCAGAGAGACAGGACGTGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTCTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
Found at i:18834979 original size:26 final size:26
Alignment explanation
Indices: 18834950--18835000 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834940 CCGGTCCGAT
*
18834950 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18834976 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
18835001 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18836505 original size:26 final size:26
Alignment explanation
Indices: 18836476--18836527 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18836466 TGGTCCGATA
*
18836476 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
18836502 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
18836528 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:18838118 original size:26 final size:26
Alignment explanation
Indices: 18838082--18838134 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18838072 CCGGTCGAAT
18838082 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18838108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18838134 C
1 C
18838135 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18839706 original size:879 final size:875
Alignment explanation
Indices: 18837347--18840261 Score: 3689
Period size: 902 Copynumber: 3.3 Consensus size: 875
18837337 GCCCAGCATG
* * * *
18837347 TGCTGCCACAACCCTCGGTCTGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCCGAT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18837411 ACCGACGAAA-A-GAGCGAGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCTGT
65 ACCGACGAAAGAGGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18837474 GGATAGATAGAGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTT
130 GGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
18837539 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
18837604 GTTTACTTTTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA
260 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA
18837669 -GATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
325 GGA-GTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-AAAAAAAAAT
* * *
18837733 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCGAAAAAGGTGTCCCCATTCCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCAAAAAAGGTGTCCCCATTTCAGAC
* *
18837798 ACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
18837863 TGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
517 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
* * * *
18837928 TGCGCACCCCCCGCCCCCCGATTGCCGGAACTCCAATGCCGTCGGTCAAGTTCTTCGACGATGCT
582 TGCGCA-----CACCCCCCGATCG-CGGAACCCCAATGCCGTCGGTCAGGTTCTTC--CG-TG--
* * *
18837993 CCTGCGAAGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
636 --T--GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
* *
18838058 CCGCAACCCTCGGTCCGGTCGAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
697 CCGCAACCCTCGGTCCGTTCG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* ** * * *
18838123 AACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGTTCAG-TCGGCCAGAGGGGCG
761 AACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCG
* * * * *
18838187 GGATGCGTAAGCCGGGGAT-TGACCGGGTCCCCCTCTGCGTGCTGTCAATCC
825 GGATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTACGTGCTGCCGATCC
* *
18838238 TACTGCCACAACCCTCAGTCCGAT-AGCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCCGATCAG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
18838302 ATCGACGAAACGAGCAGGCGGGCGGACGGGTGGGTGGGCACTACGCCGGCTAGAGAGACGGCTTG
65 ACCGACG-AA--AG-A-G-GGGC-GA---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
18838367 CACAAGCC-TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGTGTGCCAA
120 CGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* * *
18838431 TGCGATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
185 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
18838496 AAGACGACTCGTTTTCTATTTCTCACGATTTTTTAAACTTTTTATGGTTCGGGATTTTTTAAAAT
250 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
18838561 TTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
315 TTTTTTGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-A
* * *
18838626 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAA-GTATCCC
378 AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAA-TTCAAAAAAGGTGTCCC
* * * *
18838690 CATTTCAAATAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGG
442 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18838755 TGTGAGTTTTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
507 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
18838820 GCACATCATGTGCGCACACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTT-CG-G
572 GCACATCATGTGCGCACACCCCCCGATCG-CGGAACCCCAATGCCGTCGGTCAGGTTCTTCCGTG
* * *
18838883 TGATGGTGCCCCGGCAAAGAAAAATGTGACACCAGCACATCCCTGAGCCCAGCATGTGCTGCCGC
636 TGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
* *
18838948 AACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACT
701 AACCCTCGGTCC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18839013 CTGCAAGCCTAAGTCAACCCTTGAAACGAGCATGCGGGCGCTCAGCTGACCAGAGGGGCGGGATG
765 CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATG
* * *
18839078 CGCAAGACGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCC
830 CGCAAGCCGGGGATCGGACGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * *
18839124 TGCTGCCGTAACCCTCAGTCTTATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18839189 CTGACGAAATGAGTGGGCGGGCGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATACGCAAGCCG
66 CCGACGAAA-GAG-GGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
18839254 TGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCCTACCAATGCCATTTT
129 TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
18839319 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18839384 CATTTTCTGTTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
259 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* *
18839449 AGGAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGAACAAAAAAAT
324 AGGAGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAA-AAAAAAAT
* * *
18839514 TCAGCAAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCAAAAAAGGTGTCCCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCAAAAAAGGTGTCCCCATTTCAGAC
* *
18839579 ACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** **
18839644 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT-
517 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
* *
18839708 TGCGCACACACCCCCCGGCCCCCCAATCGCTAGAACCCCAATGCCGTTGGTCAGGTTTTTCGATG
582 TGCG--CACACCCCCC-G-------ATCGC-GGAACCCCAATGCCGTCGGTCAGG---TTC----
*
18839773 ATGCTCCAGCGATGCTCTAGTGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCTG
629 -T--T-C--C---G---T-GTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTG
* * * * * * *
18839838 ACCCCAGGATGTGCTGCCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
681 AGCCCAGCATGTGCTGCCGCAACCCTCGG-TCCGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18839903 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAA
745 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
18839968 CCGGCCAGTGGGGCAGGATGTGCAAGCCGGGGATC-GACTGGGTCCCCCTC-AGCGTGCTGCCGA
810 CTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGAC-GGGTCCCCCTCTA-CGTGCTGCCGA
*
18840031 TCT
873 TCC
* ** * *
18840034 TGCTACCGCAACCCTCAGTCCGATCCCATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18840099 CCGACAAAACGAGCAAACGGGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAGGCGCAA
66 CCGACGAAA-GAG-----GGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
18840164 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCA
125 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18840229 TTTTTATGGCTTGTAAATTCATACAATAGTCCC
190 TTTTTATGGCTTGTAAATTCATACAATGGTCCC
18840262 CCTCTGCGTG
Statistics
Matches: 1759, Mismatches: 200, Indels: 107
0.85 0.10 0.05
Matches are distributed among these distances:
878 51 0.03
879 400 0.23
880 10 0.01
881 2 0.00
882 5 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 263 0.15
887 7 0.00
888 27 0.02
889 1 0.00
891 66 0.04
892 3 0.00
894 3 0.00
896 2 0.00
897 39 0.02
898 1 0.00
899 3 0.00
900 2 0.00
902 416 0.24
903 44 0.03
905 1 0.00
909 3 0.00
910 271 0.15
911 2 0.00
914 132 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
TGCTGCCGCAACCCTCAGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAAGAGGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAG
GAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAAAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCAAAAAAGGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG
CACACCCCCCGATCGCGGAACCCCAATGCCGTCGGTCAGGTTCTTCCGTGTGATGGTGCCCCGGC
AAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTT
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
GACGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:18839907 original size:26 final size:26
Alignment explanation
Indices: 18839878--18839930 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18839868 TCGGTCCGAT
18839878 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18839904 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18839930 C
1 C
18839931 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18841064 original size:26 final size:26
Alignment explanation
Indices: 18841028--18841083 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18841018 CCGGTCCGAT
18841028 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* **
18841054 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCATATG
18841080 CTTA
1 CTTA
18841084 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:18841969 original size:26 final size:26
Alignment explanation
Indices: 18841933--18841988 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18841923 CTGGTCCGAT
18841933 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18841959 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18841985 CTTA
1 CTTA
18841989 AGTCAAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18842029 original size:905 final size:896
Alignment explanation
Indices: 18840257--18845990 Score: 7317
Period size: 905 Copynumber: 6.4 Consensus size: 896
18840247 TCATACAATA
* * * * * * ** * * * *
18840257 GTCCCCCTCTGCGTGCTGCTGATCCTGATGCCGTAACCCTCGGTCCGATTTGATCTTCGATTGGG
1 GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAGTTTG-GTCGATCTTAGACTGGG
* * * *
18840322 AATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGACCGGCGGGCCGGCTGGCACTACG
65 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGG-GGG-CGGCGGGCACTACG
* *
18840387 CCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-GGCACATC
127 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** *
18840451 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCC
192 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * **
18840516 TTCACGTGAAATTTCAAGGCAAGATAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
257 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* *
18840581 AGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATAG-GATCC
322 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCC
* * * * * *
18840645 TTTTATTTTTGTCGGCATGCACCAAAGAATTCAGCAAAAATCTCGAAGTGAACAAGATTTTGTGA
386 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAA-CTCGAAGTGTACAAGATTTTGTGA
*
18840710 CCATTTGGAAAAAA-TGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
450 CCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18840774 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGCGGGCCAATATAAG
514 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18840839 GGCGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAA
579 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAA
* * * **
18840904 CCCCAATGCCGCCAGTTAAGTTCTTCAGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATA
644 CCCCAATGCCGCCAGTCAGGTTC-TC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
* * * * * *
18840969 TGACACCAGCAAATGCCTGAGCCCAGCATGTGCTG-TCGCAACCCTAGGTCCGGTCCGATCTTAG
707 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GTAACCCTCGGTCTGGTCCGATCTTAG
* *
18841033 ACTGGGAACGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAA
771 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA
* * * *
18841098 ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGTCGG
836 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* ** * *
18841159 GTCCCCTTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCAGTTTGGTCGAATCTTAGACTAGG
1 GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAGTTTGGTCG-ATCTTAGACTGGG
*
18841224 AAGGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGGCGGCCGGGCACTACG
65 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGGCGG-CGGGCACTACG
** * * *
18841289 TCAACTA-AGAAGACGGG-TGCG-AAGCCGTGGACCGATTAGGGTGGTAGGTGGGTTTCGGCACA
127 TCGGCCAGAG-AGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACA
*
18841351 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAAATT-ATACAATGTTCCCTTAA
190 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG-TAAATTCATACAATGGTCCCTTAA
* * *
18841415 GCCTTCACGTTGAAAGTTTCAAGGCAAGGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACT
254 GCCTTCACG-TG-AAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* ** *
18841480 TTTTGCAGTTCGAAATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGATAG
316 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-AG
* * * *
18841545 -GATCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAATCTCGAAGTGAACAAGATT
380 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAA-CTCGAAGTGTACAAGATT
* *
18841609 TTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT
444 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
18841674 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAAT
509 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
18841739 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCGGATCGC
574 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
* **
18841804 CGGAACCCCAATGCCACCAGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAA
639 CGGAACCCCAATGCCGCCAGTCAGGTTC-TC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAA
18841869 AAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGATC
702 AAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGATC
*
18841934 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAAGCCA
767 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCA
* *
18841999 CGAAACGAGCGTGCGGGCGCTCAACCGGCCAGGGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
832 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * *
18842064 GTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTTTGGTTGAATCTTAGACTGGG
1 GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAGTTTGGTCG-ATCTTAGACTGGG
* * * *
18842129 AAGGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GC----G-GGCAGGCACTACGCCG
65 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCGGCGGGCACTACGTCG
* * *
18842185 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTCGGTTTAGGAACATCTTC
130 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18842250 TTATTTCTGCATGCCAATACCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
195 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18842315 ACGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTGCACGATTTTTGAAACATTTTGCTG
260 ACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
* * * *
18842379 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTAGGTAGACGTGATCCTTG
324 TTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTG
* ** *
18842444 TATTTTTTTTGGCATGCACAAAAGAATTCAATTAAAAACTCGAAATGTACAAGATTTTGTGACCA
389 TATTTTTTTTGGCATGCACAAAAAAATTC-AGCAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18842509 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCA
453 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * * *
18842574 AATCCTCTTTAAGGGAGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGCGCC
518 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** *
18842639 AAGTACCAGCACCCATCATACATCATGTGCGCACA-CCCCCCGGCCACCCCGATCACCGGAACCC
583 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGCCGGAACCC
* * * * *
18842703 CAATACCGTCAGTCAGGTTCT--C--TG----G-GGATGGTGCCTCGACGAAGAAAAATGCT-GC
647 CAATGCCGCCAGTCAGGTTCTCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-ATGGC
* * *
18842758 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCT-ATCCGATCTTAAACTG
711 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGT-CTGGTCCGATCTTAGACTG
* * * *
18842822 AGAATGAACTCCATATGCCTAGACTGGGAAAGAACTTCGTATGCTTAAGTCAACCCACGAAACGA
775 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGA
* * * *
18842887 GCGTGCGGCCGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATCTATCGG
840 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * * *
18842944 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCAGTTTGGTCGAATCTTAGATTGGG
1 GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAGTTTGGTCG-ATCTTAGACTGGG
* * *
18843009 AAGGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGTGGGCGGGCGGGCACTACG
65 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGGC-GGCGGGCACTACG
* * * *
18843074 CCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGAACATC
127 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
18843139 TTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
192 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
18843204 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTAC
257 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * *
18843269 GGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
322 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCT
*
18843333 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
387 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGC-AAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18843398 CATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCTAACCTGTAAAATCT
451 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
18843462 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGCG
516 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
18843527 CCAAGTACCAGCACCCATCGTACATCATGTGTGCACACACCCCCCCAGCCCCTCCGATCGTCGGA
581 CCAAGTACCAGCACCCATCGCACATCA--TGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGA
* ** *** *
18843592 ACCCCAATACCGCTGGTCAGGTTCTCTGACGATGCAAAGATGATGGTGCCCCGACGAAGAAAAAT
643 ACCCCAATGCCGCCAGTCAGGTTCTC-G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * * *
18843657 ACGGCACCAGAACATGCTCGAGCCTAGCATGTGCT-ATCATAACCCTCGGTCTGATCCGATCTTA
706 ATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GTAACCCTCGGTCTGGTCCGATCTTA
* * * * *
18843721 GACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCATGA
770 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGA
* * * * * * *
18843786 AACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATCG-GCTGG
835 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GG
* * * * **
18843848 GTCCCCCTCT--ATG-TGCGATTGATCTTGCTACTGCAAACCTC-GATCCGGTCTGATCTTAGAC
1 GTCCCCCTCTGCATGCTGC---CGATCCTGCTACCGCAACCCTCAG-TTTGGTC-GATCTTAGAC
* *
18843909 TGGGAATAAACTTCGTATGCCTAAGCCAACCGACGAAACGA----GC----G-GGCGGGCACTAC
61 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCGGCGGGCACTAC
* *
18843965 GTCGGCCAGAGAGACGGGATGCGCAAG-CATGGATCGATAGGGT-GTAGGTTGGTTTAGGCACAT
126 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18844028 CTTTCA-ATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCCTACAATTGGTCCCTTAA
191 C-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-TGGTCCCTTAA
* * **
18844091 TCCTTCACGTGAAGTTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
254 GCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
18844156 TTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGA
318 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGA
* *
18844221 TCCTTGTTTTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
383 TCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGC-AAAAACTCGAAGTGTACAAGATTTT
* *
18844286 CTGACCCTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
446 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
18844351 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATAT
511 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18844416 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCGGCCCCCCCGATCGTC
576 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCC
*
18844481 GGAACCCTAATGCCGCCAGTCAGGTTCTC-C---G----G-CGATGGTGCCCCGACGAAGAAAAA
640 GGAACCCCAATGCCGCCAGTCAGGTTCTCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * * * *
18844537 TACGGCACTAGCACATGCCTGAGCCCAGCATGTGCTACCGTAACGCTCGGTCTGGTCCGATCTTA
705 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTA
18844602 GACTGGGAATGAACT-C-----C---G--T----ATG-----C-----C-TAAGTCAACCCACGA
770 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGA
* * * * * * * ** * **
18844641 AACAAGAGTGCAGGCGTTTAGCCGGCCAGAGGGGTGAGATATGCAA-CTGAAGATC-AGTCGG
835 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGG
** * * * * ** * *
18844702 GTCCCGTTCTACGT-TTTCTCGATCCTATTATCGCAACCCTCGGTTTGGTTCGATCTTAGACT-G
1 GTCCCCCTCTGCATGCTGC-CGATCCTGCTACCGCAACCCTCAGTTTGG-TCGATCTTAGACTGG
* *
18844765 GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGATGGGCGGGCGAGCACTAC
64 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--GGGC-GGCGGGCACTAC
* * * *
18844830 GTCAGCCAGAGAGGCGGGATGTGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
126 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
18844895 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGC
191 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18844960 GTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
256 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * *
18845025 CGGTTTGGGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGATCC
321 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCC
* * *
18845090 TTGTATTTTCTTTGGCATGCAAAAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGA-TTTGTGA
386 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC-AAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
18845154 CCATTTGAAAGAAGTGACCCCATTTCAGTCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
450 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
18845219 TCAAATGCT-TTGTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAG
515 TCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
18845283 GGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCTCCCGATCGTCGGA
579 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGA
* * *
18845348 ACCCCAATGACGCCAGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCTCGACGAAGAAAAAT
643 ACCCCAATGCCGCCAGTCAGGTTCT-CG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
18845413 GTGACACTAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAG
706 ATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAG
* * *
18845478 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
771 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA
* * * * *
18845543 ACGAGCGTGCGGTCGCTCAGCCGGTCAGA-GGGCAGGATGCGCAAGCCAGGGATCGATTGG
836 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * ** * *
18845603 GTCCTCCTCTGCATGCTGCTGATCCTGCTACCGCAACCCTC-GATTCAGACCGGTCTTAGACTGA
1 GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAG-TT-TGGTCGATCTTAGACTGG
* * * **
18845667 GAATGAACTCCGTATGCCTAAGCCAACCGAC-AGAACAAGCGGGGGGGGGGGGCAAGCACTACGT
64 GAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGGCGGGGGCGGCGGGCACTACGT
* *
18845731 CGGCCAGAGAGACGGGATGCGCAAGCTC-TGGATCGATAGGGTGGTAGGTGGCTTTAGGTACATC
128 CGGCCAGAGAGACGGGATGCGCAAGC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** * * *
18845795 TTCATATTTCTACAACCCAATGCCAGTTTTAAGTCTTGTAAATTCA-ACAATGGTCCCTTAAGCC
192 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
18845859 TTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
257 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * * *
18845924 GGTTCGGGATTTTTTTAAATTTTTTCGAAAGGTGTTTTGGCCCGAAACATGGTAGACGTGATCCT
322 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCT
18845989 TG
387 TG
18845991 AAAAAAGTGT
Statistics
Matches: 4280, Mismatches: 414, Indels: 280
0.86 0.08 0.06
Matches are distributed among these distances:
853 36 0.01
854 46 0.01
855 50 0.01
856 4 0.00
857 2 0.00
861 1 0.00
863 6 0.00
864 206 0.05
865 72 0.02
866 150 0.04
867 63 0.01
868 24 0.01
870 2 0.00
872 1 0.00
874 1 0.00
875 95 0.02
876 1 0.00
880 286 0.07
881 96 0.02
882 1 0.00
884 3 0.00
885 2 0.00
886 2 0.00
887 1 0.00
889 25 0.01
890 212 0.05
891 533 0.12
892 392 0.09
893 132 0.03
894 230 0.05
895 14 0.00
897 1 0.00
898 138 0.03
899 112 0.03
900 30 0.01
901 122 0.03
902 228 0.05
903 14 0.00
904 275 0.06
905 670 0.16
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCAGTTTGGTCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCGGCGGGCACTACGTCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
CGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
GCCGCCAGTCAGGTTCTCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
Found at i:18843753 original size:26 final size:26
Alignment explanation
Indices: 18843717--18843769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18843707 CTGATCCGAT
18843717 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18843743 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18843769 C
1 C
18843770 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18845502 original size:26 final size:26
Alignment explanation
Indices: 18845473--18845525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18845463 CTGGTCCGAT
*
18845473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18845499 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18845525 C
1 C
18845526 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18846219 original size:26 final size:26
Alignment explanation
Indices: 18846190--18846240 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18846180 CGGTTTGATC
18846190 TTAGACTAAG-AATGAACTCCGTATGT
1 TTAGACT-AGCAATGAACTCCGTATGT
* *
18846216 TTAGTCTGGCAATGAACTCCGTATG
1 TTAGACTAGCAATGAACTCCGTATG
18846241 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTAGCAATGAACTCCGTATGT
Found at i:18848443 original size:859 final size:860
Alignment explanation
Indices: 18847124--18849770 Score: 3122
Period size: 903 Copynumber: 3.0 Consensus size: 860
18847114 ACTCCATATG
* * * * *
18847124 CTTAGACTGGGAATTAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAG
1 CTTAGACTGGGAATGAACATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GGAGCTCAG
* * * * ** *
18847188 CCGGCCATAGGGGCGGGATGCACAAGCC-GAGGATTGGCCGGGTCGCCCTCTGTGTGCTTCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGGCCGGGTCCCCCTCTGCATGCTGCCGAT
* * * *
18847252 CCTGCTG-CTGGTCCGGTCCAATCTTAGAATAGGAATGAACTCCGTATGCCTATGCCGACTGACG
129 CATGCTGTC-GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A---AC-
* * * * * *
18847316 AAACGAGTGAGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGATGGGATGCGCAAGCCGTG
188 CAACGA---AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
18847381 GATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCT-CTGTGCCAATGCGATTTTT
250 GATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGC-GTGCCAATGCCATTTTT
*
18847445 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTC
314 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTC
* * *
18847510 ATTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
379 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTT-GAAA
* ** *
18847574 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCACACCCAAAAAAATT
443 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18847639 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAATTGTCCCCATTTCAGACA
508 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18847703 CTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTA
573 CTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA
*
18847768 GAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAAGTACCAGCACCCATTGCACATCATG
638 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATG
* * * *
18847832 TGCACACACACCCCCAGCCCCTCCGATCGTCAGAACCCCAATGCCATCGGTCAGGTTCTCCGACA
702 TGCACACACACCCCCAGCCCC-CCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
* * *
18847897 ATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGTACATGCCCGAGCCTAGCAT
766 ATGCTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18847961 GTGCTGCCGTAACTCTCGGTCCGGTCTGAT
831 GTGCTGCCGCAACCCTCGGTCCGGTCTGAT
*
18847991 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGATGCTCAA
1 CTTAGACTGGGAATGAACATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGA-GCTCAG
* * * *
18848055 CCAGCCAGAGGGTCGGGATGCGTACGCCGGAGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATC
* * *
18848120 ATGCTGTCGGACCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAA
130 ATGCTGTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* * * * *
18848185 ATGAACGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGAT-CTGTAAGCCGTGGATCGATAG
195 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAG
*
18848249 GGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
259 GGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* ** *
18848314 AATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTGTCTATT
324 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
* * *
18848379 TTTCACGATTTTTGAAACTTTTT-CAGCTCGGGATTTTTTAAAAATTTTTTTAAAGGATTTTTGG
389 TTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTT-AAAATTTTTTGAAAGGAGTTTTGG
* *
18848443 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTCGGCATGCCCAAAAAAATTCAGCTAAAAA
453 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
18848508 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTATTAGC
518 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
18848573 TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGAT
583 TACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
* * * * *
18848638 GAGGGATAGGGGGCCAACATAAGGGCCATGTACCAGTACCCATTGCACAACATGTGCGCACCCAT
648 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--G----CA-
* *
18848703 CGCACACACCCCCCTGGCCCCCCGATCGCCGGAACCCCAGTGCCACCGGTCAGGTTCTCC-AGCG
706 --CACACA-CCCCC-AGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA-CG
* * * **
18848767 ATGCTCC-AGCGATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAAAAT
766 ATGCTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18848831 GTGCTGCTGTAACCCTCGGTCTGGTCCGAT
831 GTGCTGCCGCAACCCTCGGTCCGGTCTGAT
18848861 CTTAGACTGGTAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGG----G------A-ATG---A-AC---------A-TCCGTATGCCTAAGTCAACCC
* * *
18848926 ATGAAACGAGCGTACGGGAGCTCAGTCGGCCAGAGGGGCGGGATTCGCAAGCCAGG-GATCGGTC
41 ATGAAACGAGCGTAC-GGAGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGAGATCGGCC
* * ** * ** ** * **
18848990 AGGTCCCCTTCTATGTGTTGCTGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTG
104 GGGTCCCC--CTCTG-CATGCTG--CCGA-T--CA-TGCTGTCGGTCCGGTCCAATCTTAGACTG
* * * * **
18849055 GGAATGAACACCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCAGGCATTACGTGGGCC
160 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCC
* * *
18849120 --AGAGATGGGATGCGCAAGCCGGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATA
225 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATA
* *
18849183 TTTCTGTGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
290 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
18849248 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTT-AAAATTTTTGCAGTTCA
355 TGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCG
* * * * * * *
18849312 AGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTTGTGGTCGTGATCCTTGTATT
420 GGATTTTTTAAAATTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
18849377 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
484 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
18849442 AAAAAAGCGTCCCTATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATG
549 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATG
18849507 CTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
614 CTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
18849571 TCCCAGCACCCATCGCACATCATGTG--------CGCTCA-CCCCCCGATCGTCGGAACCCTAAT
678 TACCAGCACCCATCGCACATCATGTGCACACACACCCCCAGCCCCCCGATCGCCGGAACCCCAAT
* ** * * * *
18849627 ACTGCCGATTAGGTTCTCCGACGATGCTCCGA-CAATGGTGCCCCGATC-AAGAAAAATGCGACA
743 GCCACCGGTCAGGTTCTCCGACGATGCTCCGAGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCA
* * ** *
18849690 CCAGCACTTGCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGTTCGGTCTGAT
807 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
*
18849744 CTTAGACTGTGAATGAACAT-CGTATGC
1 CTTAGACTGGGAATGAACATCCGTATGC
18849771 TTAGACTGGG
Statistics
Matches: 1532, Mismatches: 182, Indels: 142
0.83 0.10 0.08
Matches are distributed among these distances:
857 7 0.00
858 2 0.00
859 310 0.20
860 151 0.10
861 4 0.00
862 6 0.00
863 2 0.00
866 5 0.00
867 152 0.10
868 5 0.00
869 9 0.01
870 131 0.09
871 5 0.00
872 3 0.00
873 1 0.00
874 1 0.00
879 1 0.00
880 1 0.00
881 3 0.00
883 120 0.08
884 4 0.00
885 5 0.00
896 77 0.05
897 5 0.00
898 4 0.00
899 5 0.00
901 4 0.00
902 19 0.01
903 413 0.27
904 3 0.00
905 74 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
CTTAGACTGGGAATGAACATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGAGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCA
TGCTGTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCC
CAGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGAGCGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCCGGTCTGAT
Found at i:18848901 original size:26 final size:26
Alignment explanation
Indices: 18848861--18848913 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18848851 CTGGTCCGAT
*
18848861 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18848887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18848913 C
1 C
18848914 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18849783 original size:26 final size:26
Alignment explanation
Indices: 18849744--18849796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18849734 TCGGTCTGAT
*
18849744 CTTAGACTGTGAATGAACAT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
18849770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18849796 C
1 C
18849797 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18851099 original size:26 final size:26
Alignment explanation
Indices: 18851063--18851112 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18851053 CCAATCCGAT
*
18851063 CTTAGACTGGGAATTAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
18851089 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
18851113 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:18852683 original size:26 final size:26
Alignment explanation
Indices: 18852654--18852706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18852644 CCGATCCGAT
*
18852654 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
18852680 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
18852706 C
1 C
18852707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:18853514 original size:26 final size:26
Alignment explanation
Indices: 18853485--18853537 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18853475 CCGGTCCGAT
18853485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18853511 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18853537 C
1 C
18853538 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18853794 original size:837 final size:835
Alignment explanation
Indices: 18852151--18853825 Score: 2322
Period size: 837 Copynumber: 2.0 Consensus size: 835
18852141 GTGAAGTTTC
*
18852151 ATGGCAAGTCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCGGATTTTCT
1 ATGGCAAGTCGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCGGATTTTCT
*
18852216 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGGGC
* *
18852281 ACTCACAAAACAATTCAGCTGAAAAATCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAACGTG
131 ACTCACAAAACAATTCAGCTGAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18852346 TCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
* *
18852411 GGGGTGTGAGTTCTCGAGATTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACTAGCACC
261 GGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * **
18852476 CATCGCACATCATGTGCGCACATCCCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCACTGGT
326 CATCGCACATCATGTGCGAACA-CCCCCCCGGCCCCCCGATCATCAGAACCCCAATGCCACCAGT
* **
18852541 CAGGTTCTCTGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGC
390 CAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC
*
18852606 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCCGATCTTAGACTAGGAATGAA
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGATCCGATCCGATCTTAGACTAGGAATGAA
18852671 CTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
519 CTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** *
18852736 GCGCTCAGTCGGCCAGAGGGGCCGGATGTGCAAGCCAGGGATTGGTCGGGTCCCCCTCTGCGTGC
584 GCGCTCAGCCGACCAGAGGGGCCGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * *
18852801 TGCCGATCCTACTGTCACAACCCTCTATCCGATCCAATTTTAGACTAGGAATGAACTCCGTATGA
649 TGCCGATCCTACAGCCACAACCCTCTATCCGATCCAATCTTAGACTAGGAATGAACTCCATATGA
* * * * **
18852866 CAAAGCCAACTGATGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTAG
714 CAAAGCCAACTGACGAAACGA-CGCGCGAGCGAGCGGGCGGACACTACGCCGGCCAGAGAGACAG
* * * * *
18852931 GATGCGCAAGTCGTTGATCAATAGGGTGTTAGGTTGGTTTAGGCACAAT-TTCATATTT
778 GATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTACGCAC-ATCTTCATATTT
*
18852989 ATGGCAAGAT-GACTCATTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTT-CGAGATTTT
1 ATGGCAAG-TCGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCG-GATTTT
* * *
18853052 TTACAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGG
64 CTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGG
*
18853117 GCA-TACACAAAA-AATTCAGGT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
129 GCACT-CACAAAACAATTCAGCTGAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18853179 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
192 AGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTATAAAATCTCAAATGCTCTT
18853244 TAAGGGGGTGTGAGTTCTCGA-AGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
257 TAAGGGGGTGTGAGTTCTCGAGA-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* **
18853308 GCACCCATCGCACATCATGTGCGAACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCTG
321 GCACCCATCGCACATCATGTGCGAACACCCCCCCGG-CCCCCCGATCATCAGAACCCCAATGCCA
**
18853372 CCAGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACTGGCA
385 CCAGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
* * *
18853437 CATGCCCTAGCCCAGCATGTGCTGCCGCAA-CC-C-TC-GATCCGGTCCGATCTTAGACTGGGAA
450 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGATCCGATCCGATCTTAGACTAGGAA
* * *
18853498 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT
515 TGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * ** * * * *
18853563 GCTGGTGCTCAGCCGACCAGAGGGGTGGGATGCACAAGTCGGGGATCGGTTGGGTCTCCCTCTGC
580 GCGGGCGCTCAGCCGACCAGAGGGGCCGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCTCTGC
** * * * ** * *
18853628 GTGCTGTTGGTGCTGCAGCCGTAACCCTTGGTCCGGTCCGATCCGATCTAATCTTCGACT-GGTA
645 GTGCTGCCGATCCTACAGCCACAACCC----T-C--T---ATCCGATCCAATCTTAGACTAGG-A
* * *
18853692 ATGAACTCCATATGCCTAAGCCAA-TCGACGAAATGA-GCG-GAG-GAGCGGGCGGACACTACGC
699 ATGAACTCCATATGACAAAGCCAACT-GACGAAACGACGCGCGAGCGAGCGGGCGGACACTACGC
* * * * * *
18853753 TGGCCAGAGAGACGGGATGTGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGTACATCT
763 CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTACGCACATCT
18853818 TCATATTT
828 TCATATTT
18853826 CTGTGTGCCA
Statistics
Matches: 739, Mismatches: 79, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
831 155 0.21
832 2 0.00
834 1 0.00
835 11 0.01
836 120 0.16
837 266 0.36
838 130 0.18
839 4 0.01
840 3 0.00
841 47 0.06
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (835 bp):
ATGGCAAGTCGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCGGATTTTCT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGGGC
ACTCACAAAACAATTCAGCTGAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGAACACCCCCCCGGCCCCCCGATCATCAGAACCCCAATGCCACCAGTC
AGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGATCCGATCCGATCTTAGACTAGGAATGAACT
CCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGACCAGAGGGGCCGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
CCGATCCTACAGCCACAACCCTCTATCCGATCCAATCTTAGACTAGGAATGAACTCCATATGACA
AAGCCAACTGACGAAACGACGCGCGAGCGAGCGGGCGGACACTACGCCGGCCAGAGAGACAGGAT
GCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTT
Done.