Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 104 of 117
Found at i:19137633 original size:26 final size:26
Alignment explanation
Indices: 19137595--19137647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19137585 CTGGTCTGAT
*
19137595 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
19137621 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
19137647 C
1 C
19137648 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:19141376 original size:26 final size:26
Alignment explanation
Indices: 19141340--19141392 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19141330 GTTGACTTAG
19141340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19141366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19141392 G
1 G
19141393 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19142280 original size:26 final size:26
Alignment explanation
Indices: 19142244--19142296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19142234 GTTGACTTAG
*
19142244 GCATACAGAGTTGATTCCCAGTTTAA
1 GCATACAGAGTTGATTCCCAGTCTAA
19142270 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTGATTCCCAGTCTAA
19142296 G
1 G
19142297 ATCAGACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTGATTCCCAGTCTAA
Found at i:19144921 original size:25 final size:26
Alignment explanation
Indices: 19144892--19144943 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19144882 GTTGACTTAG
*
19144892 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19144917 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19144943 G
1 G
19144944 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19145825 original size:26 final size:26
Alignment explanation
Indices: 19145786--19145838 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19145776 GTTGACTTTG
*
19145786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19145812 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19145838 G
1 G
19145839 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19146716 original size:26 final size:26
Alignment explanation
Indices: 19146680--19146732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19146670 GTTGACATAG
19146680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19146706 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19146732 G
1 G
19146733 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19146872 original size:894 final size:891
Alignment explanation
Indices: 19140467--19151832 Score: 12290
Period size: 894 Copynumber: 12.8 Consensus size: 891
19140457 GTTGAGTTAG
* * * *
19140467 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGCGACAGCACAAGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** * * *
19140532 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAAGCACCATCGCCAGAGCATCGCTGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19140597 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGCGTGTGCACACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTG
*
19140662 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19140727 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19140792 GGGGACACTTTTTTCAACTGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19140857 TGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGAG-CAAAACTCATTCTGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCCGAAAA
* * *
19140921 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19140986 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAACCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19141051 ATTGGCA-ATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 ATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19141115 CTCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCACGCCCGCCCGCTCGTTTCATCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCG-CGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
19141180 AGGCATACGGAGTTCATTCCCAGTCTAAGATCACACAAGACCAATGGTTGCGGCAGCAAGATCGG
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-TGACCGAGGGTTACGGCAGCAGGATCTG
** * * * *
19141245 CAGCACATAGAGGGGGACCC-AGCCGATCCCCG-GTTGCGCATCCTGCCCCGCTGGCCGGCTGAA
770 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
19141308 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19141366 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
19141431 CTCGGGCATGTGCTGGTGCCGCATGTTTCTTTGCCGAGGCACCATCGACGGAGCATCGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * *
19141496 ACCTGATTGGTA-GG-ATTGGGGTTCCGGTGAACGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 ACCTGA-CCG-ACGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATG
* *
19141559 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19141624 GCCCCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT-AG
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
*
19141688 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * * * *
19141753 TTATGCCTGTCAAAAAAAATACAAGTATCATGTCTACGAAGTTTGGGACCAAAACTCCTTCCAAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
19141818 AAAATTTTAAAAAATCCCGAACCACAAAACA-TTTCAAAAATCGTAAAAAATAGAAAACGAGTCA
450 AAAATTTTAAAAAATCTCGAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19141882 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19141947 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCT
579 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
19142012 TGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGTCCGCTCGTTTCATCGGT
644 TGCGCATCCCGTCTCTCTGGCC-GCGTAGT----GCCCGCCCG--C--CCGCTCGTTTCGTCGGT
* * * * * *
19142077 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGTAGCAG
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACGGCAGCAG
*
19142142 GATCAATG--GCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
764 GATC--TGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * *
19142205 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTTTAA
827 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19142270 GCATACAGAGTTGATTCCCAGTCTAAGATCAGACCGTACCGATGGTTGTCGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
** ** *
19142335 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
19142400 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGCTGTGCGCACATGATGT
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C-GGGGGGGTGTGCGCACATGATGT
* * *
19142465 GTGATGGGTGCTGGTACTTAGCCCTTATATTTGCCCCCTATCCCTCA-CAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19142529 CACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTACTCCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19142594 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTTGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
19142659 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTTCCAAAACTCTTTTCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19142724 AATTTGAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTAT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19142789 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19142854 ATTGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
**
19142919 GCATCCCGTCTCTCTAACCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGG
647 GCATCCCGTCTCTCTGGCC-GCGTAGT--------G--C--CCGCCCGCCCGCTCGTTTCGTCGG
* ** *
19142984 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATTGGA-TAGGACCGAGGGTTGCGGCAGC
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT--GACCGAGGGTTACGGCAGC
* * * * ** * * * *
19143048 AGGATCGGCAGCATGTAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATCCCGTCCCTCTAGCT
762 AGGATCTGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * *
19143113 GGTTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAA
827 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19143177 G-AT-C-G-G--------A--CT-AGA-C---C--A---AGGGCTGCGGCAGCACATGCTAGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * *
19143218 CAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATTGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * *
19143283 CTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGAGGTCGGGGGGGTGTGCGCACATGATGTGCA
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGGCGGGGGGGTGTGCGCACATGATGTGCG
* *
19143348 ATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCCTATCCCTCATCAAACCACGAGAACTCACA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19143413 CCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19143478 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19143543 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* *
19143608 ATTTTTAGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
453 A-TTTTA-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19143673 TTGCCATGAAACTTGACGTGAACGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19143738 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19143803 CGCATCCTGTCTCTCTGACCGACGTAGTCCTCGGCCGCTCGCCTGCCCGCTTGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCG-CGTAG---T--G-C-C-CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * *
19143868 GCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGTCCGATGGTTGCGGTAGTAGGA
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACGGCAGCAGGA
* * * ** *
19143933 TCGGTAGCAC-CAAAGGGGGACCCGACCGATCCCCGGGTTGCGCATCCCACCCCTCTGGCCGGCT
766 TCTGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19143997 GAGCGCTCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAATTCATTCCCAG--T--
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * **
19144054 -C-TA---AG---A-T-C-G-----GA-C---CGGACCGAGGGTTCCGGTAGCACATGCTAAGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
*
19144099 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * **
19144164 CTGACCGACGGTATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGTGTGCGCACATGATGTATG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGGCGGGGGGGTGTGCGCACATGATGTGCG
* * *
19144229 ATGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19144293 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
19144358 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19144423 CATACCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAAC
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * * *
19144487 TTTAAAAAATC-CTAAACTGAAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
455 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19144551 CCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19144616 TGGCACGTAGAAATATGAAGATTTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19144681 ATCCCGTCTCACTGGCCGGCGTAGT--------GCCCGCTCATTTTGTCGGTTGGCTTAGGCATA
649 ATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
19144738 TGAAGTTCATTCCTAGTCTAAGATCAGACTGAACCGAGGGTTACGACAGCAGGATCGGTAGTACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACTG-ACCGAGGGTTACGGCAGCAGGATCTGCAGCACG
* * * * * *
19144803 CAGAGGGGGACCCGGCCGATCCCCAACTTGTGCATCCCGCCCCTCTAGTCGGCTGAGCCCCCGCA
777 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19144868 CGCTTGTTTCATAGGTTGACTTAGGCATATGGAGTTCATT-CCAGTCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19144917 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
19144982 CTCTGGAATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCTCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
19145047 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
19145112 AATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19145177 CCCCCTTAAAGAGCATTTCAGATTTTGCAGGTATGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19145242 GGGACACTTTTTTCAAATGGTCACAAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
19145307 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* **
19145370 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19145435 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTATGTGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
19145500 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19145565 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 GCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
19145630 TACGGAGTTCATTCCCAGTTTAAGATC-GAACTGAACCGAGGGTTGCGGCAACAGGATCGGCAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACTG-ACCGAGGGTTACGGCAGCAGGATCTGCAGC
* * * * * * *
19145694 ATGTA-AGGGGGTGCCC-AGCCGATCCGCGGCTTGCGCATCTCGCCCCTTTGGCCGGCTGAGCGC
774 ACGCAGAGGGGG-ACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19145757 CCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19145812 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** * *
19145877 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTAGGGCACTATCGTCGGAGCATCACCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19145942 ACCTGACCGGCGGCATTGTGGTTCTGACGGTCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * *
19146007 AATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19146072 CCCCCTTAAAGAGCATCTGAGATTTTGCAGATATGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19146137 GGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19146202 GCGTGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19146267 GTTTAAAAAATTTCAAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19146332 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAC
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
19146397 TGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
19146462 ATCCCGTCTCTCTGGCCGCGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
649 ATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
19146527 AGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGCAGCAAGATCTGCAGCACGC
714 GGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACGGCAGCAGGATCTGCAGCACGC
* * * *
19146592 AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCAC
778 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
19146657 GCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19146706 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGA-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
* **
19146771 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
19146836 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
19146901 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19146966 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19147031 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTATTTCT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19147095 GCATGGCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAA
389 GCAT-GC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19147160 AATTTAAAAAAATCTCGAACCGT--AAATTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTTT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19147223 TGCCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
19147288 ATTGGCATGCAGAAATATGACGATTTGCTTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19147353 GCATCCTGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGGTTGCATGCTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCC-GCC-----C--GCTCGTTTCGTCGGTTGG
* * * *
19147418 CTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACGGCAGCAGGAT
* * * *
19147483 -TGGCAACACGTAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCCTCTAGCCGACT
767 CT-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19147546 GAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19147607 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAACGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGAC-GGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** *
19147672 CTAGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * ** ** ** * *
19147737 ACTTGACCGGCGGCATTGGGGTTACGGCAGCA-CATGCTGGGCTCGGGCATTTGCTAGTACCGTA
129 ACCTGACCGACGGCATTGGGGTTCCGGC-G-ATC-GGGGGGGCGGGGGGGTGTGC--GCA-C--A
** * * * * * * * *** ** **
19147801 GTTTTCTTCG-TCGGAGCATCGTTAGAGAACCTGACCAGTGGCATTGG---GGT-TCCGGCGATC
186 -TGATGTGCGAT-GG-G--T-GCT-G-GTACTTGGCC-CTTATATTGGCCCCCTATCCCTC-ATC
*** * * *** *** * * * * * * ** * * ** * **
19147861 GGGGGGCC-GGGGGGGT-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
241 ---AAACCTCGAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTAC-AGG---TT-TGCT-
** * * ** * * * **** * *** *
19147924 GCCCCCTATCCCTCATCAAA-CCTCAAGAACT---CACACCCCCTT-AAA-GAGCCTTTGAGAT-
296 G-CCAGTA--GC-CATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATG-GTC-ACAAAATC
* * * *** * * *
19147982 TT-TACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTATTCAAATGGTC
354 TTGTACA--CTT-C-G--AGT---T-TT-TA--G-CT-GAAT-----TTTTTTGTGC--AT-GCC
** * * * * *
19148046 -AC-AAAAT-CTTGTA-CACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATAC
396 AACAAAAATACAAGGATCA---C--G--TCTA-C-CAA---GTTTG-G---GGC--C--AAA-AC
* * * ** *
19148107 AAGGATCTCTTCTACCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-TCGA
440 -----TC-CTTC--CGAA----------AAAA-T--TT--TAAAAAA-TCT--CGAA-CCGT-AA
** *** *
19148171 ACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
477 AAAGTTTCAA-------AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
19148236 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
535 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * *
19148301 GAAGATGTGCCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGCATACCGTCTCTCTGGT
600 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-
** *
19148366 AGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCCAG
664 CCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
19148431 TCTAAGATCGGACTGGACCGAAGGTTACGGCAGTAGGATC-GATAGCACGTAGAGGGGGACCCGA
729 TCTAAGATCAGACT-GACCGAGGGTTACGGCAGCAGGATCTG-CAGCACGCAGAGGGGGACCCGA
* * * * *
19148495 CCAATCCCC-AGCTTGCGCATCGCGCCCCTTTGGCCGGCTGAGCGCCAGCACGCTCGTTTTGTGG
792 CCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
19148559 GTTGACTTAGGCATACGGAGTTCATT--C--TC-AA
856 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19148590 TC-TA---A---CA-T-C-G-----GAT----CGGACCGAGGGTTACGGTAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * **
19148636 CGGGCATGTGCTGGTGACGTATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
19148690 CTGACCGACGGTATTGGCGTTCCGACGATCGGGGGGGTCAGGCGGGGTGTGCGCATATGATGTGC
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C-GGGGGGGTGTGCGCACATGATGTGC
** **
19148755 GATGGGTGCTGGTACTTGGCCCTTATATTGGCTTCCTATCCCTCATCAAATTTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
**
19148820 CCCCCTTAAAGATTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
19148885 GGGACAC-TTTTTCAAATGGCCACAAAAACTTGTGCACTTTGAGTTTTCAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
19148949 CCATGCC-ACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGTTAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19149013 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19149078 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19149143 TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGC
584 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* **
19149208 ATACCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
649 ATCCCGTCTCTCTGG-CCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * **
19149273 CGGAGTTCATTCCCAGAATAAGATCAGACCAGATTGAGGGTTACGGCAGCAGGAT-TGGCAGCAC
713 CGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACGGCAGCAGGATCT-GCAGCAC
* *
19149337 ACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGC
776 GCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
19149402 ACACTCATTTCGTGGGTTGAGTTAGGCAAACGGAGTTCATTCCCAGTCTAA
841 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19149453 G-AT-C--AG---A--CC-G-----GA-C---C--A---AGGGTTATGGCAGCACATGCTAGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* ** * *
19149494 CGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCA-CATCGTCGAAGCATCGCCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * ** * *
19149558 CTGACCGACGACATTGCGGTTCCGATGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
* * * * * * **
19149623 TGGGTGCTGGTACTTGGCTCTTATATTGGTCCCTTATCCATCATCAAACCTCCAGAACTCATAGG
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
19149688 CCCATAAAGAGCATTTGAAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
19149753 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTATGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
19149818 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCAAAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
19149883 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19149948 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTACAGGCCATAAAAAAGGCATTT
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TT
* * *
19150013 GGTACGTAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
585 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19150078 TCCCATCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
650 TCCCGTCTCTCTGGCCG-CGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19150143 ATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGATC-GATAG
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GACCGAGGGTTACGGCAGCAGGATCTG-CAG
* * * * *
19150207 CACGTAGAGGTGGACCCATCCAATCTGAGGAGGACCGGCCGATCCCCGACTTGTGCATTCTGCCC
773 CACGCAGAGG-GG---GA-CC---C-------GA----CCGATCCCCGACTTGCGCATCCCGCCC
* * * * * *
19150272 CTCTGGTCGGCTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTC
819 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
19150337 CAG--T--
884 CAGTCTAA
** *
19150341 -C-TA---AG--------A-TC--AGA-C--A-GGACCGAGGGTTGCAGTAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * *
19150386 CGGG-ATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCAGG-GAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CCGGAGAA
* * * * * * *
19150449 CCTGATCGACGACATTGGGATTCCGGTGATCGAGGGGGCTGGGGGGTGTGCACACATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
* *
19150514 ATGGGTGCTGGTACTTTGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19150579 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATCG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * **
19150644 GGACGCTTTTTTCAAATGGTCACAAAATCTTATACACTTAAAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19150709 CATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGGCACAACACCTTCCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
19150774 TTTAAAAAA--TC---CC----AAA----C------C---------ACAAAA--AGT--T-TTG-
455 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19150805 -A--AAA--T--CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19150863 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCA
585 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
19150928 TCCTGTCTCTCTGGCCGGCGTAGT----GCCTGCCCGTTCATTTCGTCAGTTGGCTTAGGCATAC
650 TCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
19150989 GGAGTTCATT-CCAGTCTAAAATCAGACTGGACCGAAGGTTGCGGTAGTAGG-TTTGGCAGCAAG
714 GGAGTTCATTCCCAGTCTAAGATCAGACT-GACCGAGGGTTACGGCAGCAGGATCT-GCAGCACG
* * * * * * * * * *
19151052 CGGGGGGGGACCTGACTGATCCCCGGCTTACGCATCCCGCCTCTCTGGCCGACTGAGCACCCACA
777 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19151117 CGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19151167 GCATACGGAGTTCATTCCCGATTTAAGATCAGACTGGACCGAGGGTTGTGACAGCAGATGCTTGG
1 GCATACGGAGTTCATTCCAG-TCTAAGATCGGAC-GGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * * * *
19151232 CTCGAGCATCTGTTGGTGCTGCATTTTTCTTCATCGTGGCACCTTCGTCGGAGCATCGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
19151297 ACATGATCGGCGGCATTGGGGTTCCGGCGATTGGGGCGACCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGGCGGGGGGGTGTGCGCACATGATGTG
*
19151362 CGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19151427 ACCCCCTTAAAAAGCATTTCAGATTTTACAGGTGTGCTGCCAGTAGCCATTAAAGTG-CTTAAAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
19151491 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
19151556 GTGCATG-C--C-AAAA-A-AA--ATC-C-T-T-CC---------G--AAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
19151598 AATTTTAAAAAATCCCGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
19151662 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTAGAACCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19151727 ATTGGCACGCACAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCAATCCACGGCTTCC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
19151792 GCATCATGTTTCTCTGGCATGCGTAGTGCCCGCCCGCCCGC
647 GCATCCCGTCTCTCTGGC-CGCGTAGTGCCCGCCCGCCCGC
19151833 CAACCCGCTC
Statistics
Matches: 8932, Mismatches: 1113, Indels: 872
0.82 0.10 0.08
Matches are distributed among these distances:
822 80 0.01
824 1 0.00
826 2 0.00
827 28 0.00
828 2 0.00
829 2 0.00
831 3 0.00
835 3 0.00
836 2 0.00
837 1 0.00
838 2 0.00
839 2 0.00
840 4 0.00
841 45 0.01
842 46 0.01
843 3 0.00
844 3 0.00
845 2 0.00
846 5 0.00
847 1 0.00
848 32 0.00
849 75 0.01
850 288 0.03
851 48 0.01
853 1 0.00
854 5 0.00
855 3 0.00
856 3 0.00
857 1 0.00
858 428 0.05
859 92 0.01
860 91 0.01
861 3 0.00
862 5 0.00
863 13 0.00
864 7 0.00
865 11 0.00
866 144 0.02
867 182 0.02
868 222 0.02
869 86 0.01
871 11 0.00
872 3 0.00
873 97 0.01
874 8 0.00
875 191 0.02
876 11 0.00
877 7 0.00
878 10 0.00
879 173 0.02
880 173 0.02
881 384 0.04
882 195 0.02
883 9 0.00
884 93 0.01
885 438 0.05
886 262 0.03
887 11 0.00
888 3 0.00
889 1 0.00
890 4 0.00
891 33 0.00
892 425 0.05
893 196 0.02
894 774 0.09
895 662 0.07
896 2 0.00
897 1 0.00
898 1 0.00
899 604 0.07
900 9 0.00
901 236 0.03
902 106 0.01
903 121 0.01
904 617 0.07
905 72 0.01
906 7 0.00
907 9 0.00
908 182 0.02
909 7 0.00
910 7 0.00
911 7 0.00
912 14 0.00
913 13 0.00
914 9 0.00
915 17 0.00
916 10 0.00
918 3 0.00
919 4 0.00
920 8 0.00
921 7 0.00
922 16 0.00
923 3 0.00
924 5 0.00
925 10 0.00
926 3 0.00
927 3 0.00
929 12 0.00
930 5 0.00
931 7 0.00
932 16 0.00
933 6 0.00
934 4 0.00
935 4 0.00
938 10 0.00
939 21 0.00
940 12 0.00
941 13 0.00
942 5 0.00
943 5 0.00
944 1 0.00
945 10 0.00
946 3 0.00
947 2 0.00
949 7 0.00
950 6 0.00
951 40 0.00
954 2 0.00
955 1 0.00
956 1 0.00
958 3 0.00
959 4 0.00
962 59 0.01
963 1 0.00
964 2 0.00
965 4 0.00
967 6 0.00
972 1 0.00
973 1 0.00
975 1 0.00
976 2 0.00
977 4 0.00
978 1 0.00
979 1 0.00
980 2 0.00
982 9 0.00
983 5 0.00
984 2 0.00
985 3 0.00
986 4 0.00
987 100 0.01
988 80 0.01
989 1 0.00
994 2 0.00
995 177 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTGACCGAGGGTTACGGCAGCAGGATCTGCAGCACGCAGA
GGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19147617 original size:26 final size:26
Alignment explanation
Indices: 19147581--19147633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19147571 GTTGACTTAG
*
19147581 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19147607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19147633 G
1 G
19147634 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19149530 original size:858 final size:857
Alignment explanation
Indices: 19147755--19151832 Score: 4515
Period size: 858 Copynumber: 4.7 Consensus size: 857
19147745 GGCGGCATTG
* * * * * * **
19147755 GGGTTACGGCAGCACATGCTGGGCTCGGGCATTTGCTAGTACCGTAGTTTTCTTCGTC--GG--A
1 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGACA
* *** * * *
19147816 GCATCGTTAGAGAACCTGACC-AGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTG
66 CCATCGCCGGAGAACCTGACCGA-CGGCATTGGCGTTCCGGCGATCGGGGGG-CAGGGGGGTGTG
19147880 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
129 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
19147945 CTCAAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTA
194 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
19148010 AAGTGTCTAAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
19148075 CTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCTTCTACCAAGTTTGTGGCCAAAAC
324 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** *
19148140 TCCTTCCAAAAAAATTTTAAAAAATCCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
389 TCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
19148205 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
453 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
19148270 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
518 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
19148335 ATCAACGGCTTGCGCATACCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
583 ATCCACGGCTTGCGCAT-CCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
19148400 GATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTACGGCAGT
647 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACGGCAGC
* ** * * * *
19148465 AGGATCGATAGCAC-GTAGAGGGGGACCCGACCAATCCCC-AGCTTGCGCATCGCGCCCCTTTGG
712 AGGATTGGCAGCACAGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGG
* * * * *
19148528 CCGGCTGAGCGCCAGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAATCT
776 CCGGCTGAGCGCC-GCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
19148593 AACATCGGATCGGACCGA
840 AAGATCAGACCGGACCAA
* *
19148611 GGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGAC-GTATTTTTCTTCACCGGGG-C
1 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTTCACCGGGGAC
* *
19148674 ACCATCGCCGGAGAACCTGACCGACGGTATTGGCGTTCCGACGATCGGGGGGGTCAGGCGGGGTG
65 ACCATCGCCGGAGAACCTGACCGACGGCATTGGCGTTCCGGCGATC-GGGGGG-CAGG-GGGGTG
* **
19148739 TGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTTCCTATCCCTCATCAA
127 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** **
19148804 ATTTCGAGAACTCACACCCCCTTAAAGATTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
192 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * *
19148869 TAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGCCACAAAAACTTGTGCACTTTGAGTTTTC
257 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * **
19148933 AGCTGAATTTTTTTGTCCATGCC-ACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGTTAAA
322 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
*
19148997 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
387 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
19149062 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
452 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
19149127 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATC
517 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
19149192 GATCAACGGCTTGCGCATACCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
582 GATCCACGGCTTGCGCAT-CCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
** ** ** *
19149257 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGAATAAGATCAGACCAGATTGAGGGTTACGGCAG
646 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACGGCAG
19149322 CAGGATTGGCAGCACA-CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
711 CAGGATTGGCAGCACAGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
* *
19149386 CCGGCTGAGCGTCCGCACACTCATTTCGTGGGTTGAGTTAGGCAAACGGAGTTCATTCCCAGTCT
776 CCGGCTGAGCG-CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19149451 AAGATCAGACCGGACCAA
840 AAGATCAGACCGGACCAA
* *
19149469 GGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCAC
1 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGG-AC
* * **
19149534 ATCGTCGAAGCATCGCCAGAGAACCTGACCGACGACATT-GCGGTTCCGATGATCGGGGGGCCAG
65 A----C----CATCGCCGGAGAACCTGACCGACGGCATTGGC-GTTCCGGCGATCGGGGGG-CAG
* * * *
19149598 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGTCCCTTATCCA
120 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * ** * * *
19149663 TCATCAAACCTCCAGAACTCATAGGCCCATAAAGAGCATTTGAAATTTTATAGGTTTGCTGCCAG
185 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
19149728 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
250 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
19149793 AGTTTTTAGCTAAATTGTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAG
315 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** *
19149858 GGCCAAAACTCCTTCAAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
380 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGA
19149923 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
445 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
19149988 TGTACAGGCCATAAAAAAGGCATTTGGTACGTAGAAATATGAAGATGTGCCTCAACCCACCTACC
510 TTTACAAGCCATAAAAATGGCA-TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
19150053 ACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCC
574 ACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGG-TAGGCGTAGT----GCCCGCCCGCC
* * *
19150117 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCG
633 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
* * * * * * *
19150182 AGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGGTGGACCCATCCAATCTGAGGAGGA-CCGGC
698 AAGGTTACGGCAGCAGGAT---T-G---G--CA----G---CA--C-AGCAGAGGGGGACCCGAC
* * * *
19150246 CGATCCCCGACTTGTGCATTCTGCCCCTCTGGTCGGCTGAGCGCC-CACACGTTCATTTCGTGGG
744 CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACAC--TCATTTCGTGGG
* * * *
19150310 TTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGACAGGACCGA
807 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAA
* * * * * * *
19150361 GGGTTGCAGTAGCACATGCTGGGCTCGGG-ATGTGCTGGTGCCGTATTTTTCTTCGCCAGGG-CA
1 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGACA
* * * *
19150424 CCATCGTCGGAGCATCGTCAGGGAACCTGATCGACGACATTGG-GATTCCGGTGATCGAGGGGGC
66 CCA---TC---GC--CG---GAGAACCTGACCGACGGCATTGGCG-TTCCGGCGATCG-GGGGGC
* * * *
19150488 TGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTTGCCCTCATATTGGCCCCCTATC
118 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
19150553 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
183 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
19150618 AGTAGCCATTAAAATGTCTGAAATCGGGACGCTTTTTTCAAATGGTCACAAAATCTTATACACTT
248 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** *
19150683 AAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTT
313 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
19150748 GGGGGCACAACACCTTCCGAAAAAATTTTAAAAAA--T----CC-C--AAA----C------C--
378 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
*
19150792 -------ACAAAA--AGT--T-TTG--A--AAA--T--CGTGAAGGCTTAAGGGACCATTGTATG
443 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
19150837 AATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAAC
508 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * *
19150902 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCTGCCCGTT
573 CACCCTATCGATCCACGGCTTGCGCATCC-GTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCT
* * *
19150963 CATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAAATCAGACTGGACCGAAGG
637 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGG
* * * * * * * * * *
19151027 TTGCGGTAGTAGGTTTGGCAGCA-AGCGGGGGGGGACCTGACTGATCCCCGGCTTACGCATCCCG
702 TTACGGCAGCAGGATTGGCAGCACAGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCG
* * * *
19151091 CCTCTCTGGCCGACTGAGCACC-CACACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCA
767 CCCCTCTGGCCGGCTGAGCGCCGCACA--CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
19151155 TTCCCATTCTAAGCATACGGAGTTCATTCCCGATTTAAGATCAGACTGGACCGA
830 TTCCCAGTCTAAG-AT-C--AG---A---CCG------GA-C---C---A---A
** * * * * * * *
19151209 GGGTTGTGACAGCAGATGCTTGGCTCGAGCATCTGTTGGTGCTGCATTTTTCTTCATCGTGGCAC
1 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCG-GG---
* * * * * * * * *
19151274 CTTCGTCGGAGCATCGCCGGAGAACATGATCGGCGGCATTGGGGTTCCGGCGATTGGGGCGACCG
62 ----GAC--ACCATCGCCGGAGAACCTGACCGACGGCATTGGCGTTCCGGCGATCGGGG-G-GCA
*
19151339 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCC
119 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
19151404 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTGTGCTGCCA
184 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
19151469 GTAGCCATTAAAGTG-CTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
249 GTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
19151533 CGAGTTTTTAGCTGAATTTTTTTGTGCATG-C--C-AAAA-A-AA--ATC-C-T-T-CC------
313 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
19151580 ---G--AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CGCAAAAAGTTTCAAAAATCAT
378 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
19151639 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATG
443 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
19151704 AATTTAGAACCCATAAAAATGGCATTGGCACGCACAAATATGAAGATGTGGCTAAACCCACCTAC
508 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
19151769 CACCCTATCAATCCACGGCTTCCGCATCATGTTTCTCTGGCATGCGTAGTGCCCGCCCGCCCGC
573 CACCCTATCGATCCACGGCTTGCGCATC-CGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGC
19151833 CAACCCGCTC
Statistics
Matches: 2750, Mismatches: 313, Indels: 303
0.82 0.09 0.09
Matches are distributed among these distances:
821 8 0.00
822 86 0.03
823 2 0.00
824 2 0.00
825 2 0.00
826 2 0.00
827 27 0.01
828 1 0.00
829 2 0.00
832 4 0.00
833 1 0.00
834 1 0.00
835 3 0.00
837 1 0.00
838 5 0.00
839 3 0.00
840 1 0.00
841 37 0.01
842 46 0.02
844 2 0.00
845 2 0.00
846 4 0.00
847 1 0.00
848 26 0.01
849 56 0.02
850 288 0.10
851 47 0.02
852 2 0.00
853 1 0.00
854 7 0.00
855 3 0.00
856 52 0.02
857 6 0.00
858 468 0.17
859 105 0.04
860 72 0.03
861 149 0.05
862 3 0.00
863 3 0.00
864 6 0.00
865 1 0.00
866 141 0.05
867 192 0.07
868 210 0.08
869 81 0.03
870 1 0.00
871 8 0.00
873 86 0.03
876 1 0.00
877 1 0.00
879 1 0.00
880 1 0.00
881 2 0.00
882 1 0.00
883 3 0.00
884 2 0.00
885 1 0.00
886 3 0.00
887 2 0.00
889 5 0.00
890 6 0.00
891 32 0.01
892 418 0.15
893 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (857 bp):
GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGACA
CCATCGCCGGAGAACCTGACCGACGGCATTGGCGTTCCGGCGATCGGGGGGCAGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACGGCAGCAGGA
TTGGCAGCACAGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCAA
Found at i:19151177 original size:26 final size:26
Alignment explanation
Indices: 19151141--19151193 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19151131 GTTGACTTAG
19151141 GCATACGGAGTTCATTCCC-ATTCTAA
1 GCATACGGAGTTCATTCCCGATT-TAA
19151167 GCATACGGAGTTCATTCCCGATTTAA
1 GCATACGGAGTTCATTCCCGATTTAA
19151193 G
1 G
19151194 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATTTAA
Found at i:19151589 original size:13 final size:13
Alignment explanation
Indices: 19151568--19151598 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
19151558 GCATGCCAAA
19151568 AAAAATCCTTCCG
1 AAAAATCCTTCCG
*
19151581 AAAACTCCTTCCG
1 AAAAATCCTTCCG
19151594 AAAAA
1 AAAAA
19151599 ATTTTAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAAATCCTTCCG
Found at i:19152190 original size:335 final size:334
Alignment explanation
Indices: 19151581--19152193 Score: 953
Period size: 335 Copynumber: 1.8 Consensus size: 334
19151571 AATCCTTCCG
* *
19151581 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACGCAAAAAGTTTCAAAAATCATGAAAAAT
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACACAAAAAGTTTCAAAAATAATGAAAAAT
*
19151646 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTAG
66 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTAC
* *
19151711 AACCCATAAAAATGGCATTGGCACGCACAAATATGAAGATGTGGCTAAACCCACCTACCACCCTA
131 AACCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19151776 TCAATCCACGGCTTCCGCATCATGTTTCTCTGGCATGCGTAGTGCCCGCCCGCCCGCCAACCCGC
196 TCAATCCACGGCTTCCGCATCATGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCAACACGC
*
19151841 TCGTTTTGTCGGTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAACAAGGATCATGTCTACCAA
261 TCGTTTCGTCGGTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAACAAGGATCATGTCTACCAA
19151906 GTTTGGGCC
326 GTTTGGGCC
* *
19151915 AAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA-AATGAAAAA
1 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CACAAAAAGTTTCAAAAATAATGAAAAA
* * *
19151979 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
65 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTA
*
19152044 CAAGCCACA-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
130 CAA-CC-CATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * * **
19152108 CTATCGATCCATGGCTTGCGCATC-TCGTCTCTTTGGCCGGCGTAGTGCCTGCCTGCCCGCCCGC
193 CTATCAATCCACGGCTTCCGCATCAT-GTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCAAC
19152172 ACGCTCGTTTCGTCGGTTGGCT
257 ACGCTCGTTTCGTCGGTTGGCT
19152194 TAGGCGTACG
Statistics
Matches: 251, Mismatches: 24, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
334 107 0.43
335 142 0.57
336 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (334 bp):
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACACAAAAAGTTTCAAAAATAATGAAAAAT
AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTAC
AACCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCAATCCACGGCTTCCGCATCATGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCAACACGC
TCGTTTCGTCGGTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAACAAGGATCATGTCTACCAA
GTTTGGGCC
Found at i:19153676 original size:873 final size:870
Alignment explanation
Indices: 19152390--19154558 Score: 3145
Period size: 873 Copynumber: 2.5 Consensus size: 870
19152380 AAGCATACAA
* * * *
19152390 AGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCATGATCGAGGGTGGTGGCAGCACATGCTGGGCTCGGGC
* *
19152454 ATGTGCTGGTGTCGCATTTTTCTTCGCCGGCGCACCA---TC--G---C-CGGAGAACCTGACCG
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGCGCACCATCGTCGAGCATCGCGGAGAACCTGACCG
19152510 ACGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 ACGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
19152575 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
19152640 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19152705 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCTAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATGCTAAC
*
19152770 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAAAAAATTTTAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAA
* *
19152835 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACT
455 TCCCAAACCGTAAAAAGTTTCAAAAA-CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
19152900 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19152965 AAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
* * * *
19153030 TCTGGCCAGCG-AGTGCCCGTCCACCCGCCTACCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
649 TCTGGCCGGCGTAGTGCCCGTCCGCCCGCC-A-CCGCTCGTTTCGTCGGTTGGCTTAGGCGTACG
* * * * *
19153094 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTCATGGCAGCAAGATGGACAGCATGCA
712 GAGTTCATTCCCAGTCTAAGATCGCA-CAGACTGAGGGTTACGGCAGCAAGATGGGCAGCACGCA
* * * * * **
19153159 GAGGGGGACTC-AGCCGATCCCCGGCTTGCGTATCCCGCCCCTTTGGCTGGCTGAGCGCCCGAAC
776 GAGGGGGACCCGA-TCGATCCCCGGCTTGTGCATCCCGCCCCTATGGCTGGCTGAGCGCCCGGTC
* * *
19153223 GCTCGTTTCGCGGGTTGACTTAGGCATATGG
840 GCTTGCTTCGTGGGTTGACTTAGGCATATGG
* *
19153254 AGTTCATTCCCAGTCAAAGATCGGA-CATGATCGAGGGTGGTGGCAGCACATGCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCATGATCGAGGGTGGTGGCAGCACATGCTGGGCTCGGGC
* *
19153318 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGCGCACCATCGTC-GAGCATCGC-GGAGAACCTGAC
* ** * *
19153383 CGACGGAATTAGGGTTCCAATGATCGGGGGGCCGGGGGGTGCGCGCACATGATGTGCGATGCGTG
129 CGACGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
19153448 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
19153513 AAGA-CA-TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19153576 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATGTTTTTTGCATGCTA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATGCTA
*
19153641 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCCAAAAAATTTTAAAA
19153706 AATCCCAAACCGTAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
453 AATCCCAAACCGTAAAAAGTTTCAAAAA-CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
19153771 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
19153836 AGAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
* *
19153901 TCTCTGGCCGGCGTAGTGCCTACCTGTCTGCCCG-CA-CGCTCGTCTCGTCGGTTGGCTTAGGCG
647 TCTCTGGCCGGCGTAGTG-C--CC-GTCCGCCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCG
* * * * * *
19153964 TACAGAGTTTATTCCCAGTCTAATATCGCATCAAACTGAGGGTTACGGTAGCAGGATGGGCAGCA
708 TACGGAGTTCATTCCCAGTCTAAGATCGCA-CAGACTGAGGGTTACGGCAGCAAGATGGGCAGCA
* * *
19154029 CGCAGATGGGGACCCGATCGATCCCCGGCTTATGCATCCCACCCCTATGG-TCGGCTGAGCGCCC
772 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTATGGCT-GGCTGAGCGCCC
19154093 GGTCGCTTGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCAAGTCTAAGCATACAG
836 GGTCGCTTGCTTCGTGGGTTGAC-T-----TA--G-G--CAT----A---T--G------G
* * *
19154154 AGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCATGATCGAGGGTGGTGGCAGCACATGCTGGGCTCGGGC
* * *
19154218 ATGTGCTGGTGCCCCATTTTTCTTCGTCGACGCACCATCGCCCGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGCGCACCATCG-TCGAGCATCG-CGGAGAACCTGAC
* * * *
19154283 C-AGTGGCATTAGGTTTCCGGCGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
129 CGA-CGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
19154347 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCAACAAACCTCAAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
19154412 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
19154477 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAAGCT
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATGCT
19154542 AACAAAAATACAAGGAT
388 AACAAAAATACAAGGAT
19154559 GACTTCACGT
Statistics
Matches: 1166, Mismatches: 87, Indels: 66
0.88 0.07 0.05
Matches are distributed among these distances:
863 2 0.00
864 88 0.08
867 2 0.00
870 1 0.00
873 378 0.32
874 158 0.14
875 143 0.12
876 1 0.00
877 3 0.00
878 7 0.01
880 2 0.00
882 1 0.00
883 1 0.00
885 3 0.00
889 1 0.00
892 1 0.00
894 1 0.00
899 1 0.00
900 233 0.20
901 6 0.01
902 133 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
AGTTCATTCCCAGTCTAAGATCGGACCATGATCGAGGGTGGTGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGCGCACCATCGTCGAGCATCGCGGAGAACCTGACCG
ACGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATGCTAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAAT
CCCAAACCGTAAAAAGTTTCAAAAACATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGTCCGCCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGT
TCATTCCCAGTCTAAGATCGCACAGACTGAGGGTTACGGCAGCAAGATGGGCAGCACGCAGAGGG
GGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTATGGCTGGCTGAGCGCCCGGTCGCTTGC
TTCGTGGGTTGACTTAGGCATATGG
Found at i:19154156 original size:26 final size:26
Alignment explanation
Indices: 19154120--19154172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19154110 GTTGACTTAG
*
19154120 GCATACGGAGTTCATACCAAGTCTAA
1 GCATACAGAGTTCATACCAAGTCTAA
* *
19154146 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCAAGTCTAA
19154172 G
1 G
19154173 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCAAGTCTAA
Found at i:19154939 original size:26 final size:26
Alignment explanation
Indices: 19154909--19154961 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19154899 GTTGACTTAG
* *
19154909 GCATATGGAGTTCATTCCTACTCTAA
1 GCATAGGGAGTTCATTCCCACTCTAA
* *
19154935 GCATAGGGAGTTCGTTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCACTCTAA
19154961 G
1 G
19154962 ATCGGACATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCACTCTAA
Found at i:19155297 original size:789 final size:789
Alignment explanation
Indices: 19153770--19155346 Score: 2322
Period size: 789 Copynumber: 2.0 Consensus size: 789
19153760 TTGCCATGAA
* *
19153770 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACG
*
19153835 CAGAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGT
66 CAGAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* *** * * *
19153900 CTCTCTGGCCGGCGTAGTGCCTACCTGTCTGCCCGCACGCTCGTCTCGTCGGTTGGCTTAGGCGT
131 CTCTCTGGCCAGCGTAGTGCCTACCCACCCGCCCGCACGCTCGTCTCGTCAGTTGGCTTAGGCAT
* * * * * * * * *
19153965 ACAGAGTTTATTCCCAGTCTAATATCGCATCAAACTGAGGGTTACGGTAGCAGGATGGGCAGCAC
196 ACAGAGTTCATTCCCAGTCTAAGATCGCACCAAACCGAGGGTCACGGCAGCAAGATAGACAGCAC
* * * *
19154030 GCAGATGGGGACCCGATCGATCCCCGGCTTATGCATCCCACCCCTATGGTCGGCTGAGCGCCCGG
261 GCAGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCACCCCTATGGTCGGCTGAGCGCCCGC
* * * *
19154095 TCGCTTGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCAAGTCTAAGCATACAGAGTTCA
326 ACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATACCAACTCTAAGCATACAGAGTTCA
* *
19154160 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
391 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTGGCGGCAGCACATGCTAGGCTCGGGCATGTGCT
* * **
19154225 GGTGCCCCATTTTTCTTCGTCGACGCACCATCGCCCGAGCATCGCCGGAGAACCTGACCAGTGGC
456 GGTGCCCCATTTTTCTTCGTCGACGCACCATCGCCCGAGCATCGCCAGAGAACCTGACCAGCGAA
* ** *
19154290 ATTAGGTTTCCGGCGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
521 ATTAGGGTTCCAACGATCGGAGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
19154355 TTGGCCCTTATATTGGCCCCCTATCGCTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
586 TTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
19154420 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
651 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19154485 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAAGCTAACAAAAA
716 AATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCAAGCTAA-AAAAA
19154550 TACAAGGATG
780 TACAAGGATG
19154560 ACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG-CATTAAAAATGGCATTGGCAC
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCA-TAAAAATGGCATTGGCAC
* * * *
19154624 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCGCATCCCA
65 GCAGAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * *
19154689 TCTCTCTGGCCAGCG-AGTG-CTCGCCCACCCGCCTGC-CTGCTCGTTTCGTCAGTTGGCTTAGG
130 TCTCTCTGGCCAGCGTAGTGCCT-ACCCACCCGCCCGCAC-GCTCGTCTCGTCAGTTGGCTTAGG
* * * *
19154751 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTCATGGCAGCAAGATAGACAG
193 CATACAGAGTTCATTCCCAGTCTAAGATCGCACCAAACCGAGGGTCACGGCAGCAAGATAGACAG
* * * * * * *
19154816 CATGCAGAGGGGGACTCGGTCGATCCCCAGCTTGCGTATCCCGCCCCTCTGG-CTGGCTGAGCGC
258 CACGCAGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCACCCCTATGGTC-GGCTGAGCGC
* * * * * **
19154880 CCGCACGCTCGTTTCATGTGTTGACTTAGGCATATGGAGTTCATTCCTACTCTAAGCATAGGGAG
322 CCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATACCAACTCTAAGCATACAGAG
* * * *
19154945 TTCGTTCCCAGTCTAAGATCGGA-CATGATCGAGGGTGGTGGCAGCGCATGCTAGGCTCGGGCAT
387 TTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTGGCGGCAGCACATGCTAGGCTCGGGCAT
* ** **
19155009 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCAGAGAACCTGACC-
451 GTGCTGGTGCCCCATTTTTCTTCGTCGACGCACCATCGCCCGAGCATCGCCAGAGAACCTGACCA
* *
19155073 GACGAAATTAGGGTTCCAATGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
516 G-CGAAATTAGGGTTCCAACGATCGGAGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19155138 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAA
580 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTAA
*
19155203 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
645 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19155268 TTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATGCTAA
710 TTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCAAGCTAA
19155333 AAAAATACAAGGAT
775 AAAAATACAAGGAT
19155347 CACGTCTACC
Statistics
Matches: 701, Mismatches: 80, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
788 21 0.03
789 547 0.78
790 133 0.19
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (789 bp):
ACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCAT
CTCTCTGGCCAGCGTAGTGCCTACCCACCCGCCCGCACGCTCGTCTCGTCAGTTGGCTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGATCGCACCAAACCGAGGGTCACGGCAGCAAGATAGACAGCAC
GCAGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCACCCCTATGGTCGGCTGAGCGCCCGC
ACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATACCAACTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTGGCGGCAGCACATGCTAGGCTCGGGCATGTGCT
GGTGCCCCATTTTTCTTCGTCGACGCACCATCGCCCGAGCATCGCCAGAGAACCTGACCAGCGAA
ATTAGGGTTCCAACGATCGGAGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCAAGCTAAAAAAAT
ACAAGGATG
Found at i:19156417 original size:733 final size:740
Alignment explanation
Indices: 19155004--19157897 Score: 4796
Period size: 733 Copynumber: 3.9 Consensus size: 740
19154994 GCTAGGCTCG
* *
19155004 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCAGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCT
* * * *
19155069 GACCGACGAAATTAGGGTTCCAATGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGG
66 GACCGACGAAATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
* *
19155134 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCC
131 GTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATC-AACCTCAAGAACTCACACCCCC
*
19155199 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19155264 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTTTGCATG
* *
19155329 CT-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTA
325 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
* * * *
19155393 AAAAATCCCAAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
390 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
19155458 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19155523 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
*
19155588 GTCTCTCTGGCCAGCGAGTACCCGCCCACCCGCCTGCACGCTCGTTTCGTCGGTTGGCTTAGGCA
585 GTCTCTCTGGCCAGCGAGTACCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
19155653 TACGAAGTTCATTCCCAGTCCAACATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAACA
650 TACGAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAGCA
*
19155718 TGTAGAGGGGGACTCGACTGATCCCC
715 TGCAGAGGGGGACTCGACTGATCCCC
* *
19155744 GGCATGTGCTGGTGCCGTATTTTTCTTCGGCGGGGCACTATCG-TCGGAGCATCGCCGGAGAACC
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACC
*
19155808 TGACCGACGAAATTGGGGTTCCAACGATCGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATG
65 TGACCGACGAAATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATG
* *
19155873 GGTGCTGGTACTTGACCCTTATATTGGCCCCCTAT-CC-C-TC-A-C-CAAGAACTCACACCTCG
130 GGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAACCTCAAGAACTCACACCCCC
19155932 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19155997 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAAATGTTTTTTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTTTGCATG
*
19156061 CTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
325 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
* *
19156126 AAAAATCCCAAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
390 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
19156191 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
*
19156256 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
*
19156321 GTCTCTCTGGCCAGCGAGTGCCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
585 GTCTCTCTGGCCAGCGAGTACCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
19156386 TACGAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAGCA
650 TACGAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAGCA
19156451 TGCAGAGGGGGACTCGACTGATCCCC
715 TGCAGAGGGGGACTCGACTGATCCCC
19156477 GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCG-TCGGAGCATCGCCGGAGAACC
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACC
* *
19156541 TGACCGACGAAATTGGGGTTCCAACGATCAGGGGGCCGAGGGGTGTGCACACATGATGTGCGATG
65 TGACCGACGAAATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATG
* *
19156606 GGTGCTGGTACTTGACCCTTATATTGGCCCCCTAT-CC-C-TC-A-C-CAAGAACTCACACCTCG
130 GGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAACCTCAAGAACTCACACCCCC
19156665 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19156730 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTTTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTTTGCATG
19156795 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
325 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
19156860 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
390 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
19156925 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19156990 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTACGCATCCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
* * * * * * *
19157055 ATCTCTCTGGCCAGCGAGTGCTCGTCCGCCCGCCTGCCCGCTTGTTTCGTCAGTTGGCTTAGGCA
585 GTCTCTCTGGCCAGCGAGTACCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
19157120 TA-GGAGTTCATTCCCAGTCCAAGATCGAACCAGACCGAGGGTTACGGCAGCAAGATGGACAGCA
650 TACGAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAGCA
* * *
19157184 TGGAGAGGGGGACTCG-GTCGATCCCT
715 TGCAGAGGGGGACTCGACT-GATCCCC
* *
19157210 GGCATGTGCTGGTGCTGCATTTTTCTTCGACGGGGCACCATCGCTGGAGCATCGCCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCT
* * *
19157275 GATCGACGAAATTGGGGTT-CGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGG
66 GACCGACGAAATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
* *
19157338 GTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
131 GTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATC-AACCTCAAGAACTCACACCCCC
19157403 TT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19157467 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTTTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTTTGCATG
19157532 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
325 CTAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
19157597 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
390 AAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
19157662 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
19157727 CGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCAATCTATTCACGGCTTACGCATCCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
* * * * *
19157792 GTCTCTCTCGCCGGCATAGTACCCG----CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
585 GTCTCTCTGGCCAGC-GAGTACCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19157853 AT-CTGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGATGGTT
649 ATAC-GAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTT
19157898 CGTTAGCAGG
Statistics
Matches: 2052, Mismatches: 87, Indels: 35
0.94 0.04 0.02
Matches are distributed among these distances:
731 58 0.03
732 43 0.02
733 962 0.47
734 376 0.18
735 38 0.02
736 1 0.00
737 395 0.19
738 24 0.01
739 3 0.00
740 152 0.07
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (740 bp):
GGCATGTGCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCT
GACCGACGAAATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTTTGCATGC
TAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAA
AAAATCCCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
TCTCTCTGGCCAGCGAGTACCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGAAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATTGATAGCAT
GCAGAGGGGGACTCGACTGATCCCC
Found at i:19159278 original size:382 final size:374
Alignment explanation
Indices: 19158550--19159278 Score: 1007
Period size: 382 Copynumber: 1.9 Consensus size: 374
19158540 CCCGTGAAGG
*
19158550 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
** *
19158615 TGTGCATAAACGTACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCAGGCG
66 TGTGCATAAACCCACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCAGACG
* * *
19158680 TAGTGCCCGCCTGTCCGCCCGCTCATTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGT
131 TAGTGCCCGCCTGCCCGCCCGCTCATTTCGTCAGTTCGCATAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
19158745 CTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGGCAACACGTAGAGGAGGACCCGGCT
196 CTAAGATCAGACAGAACCGAGGGTTACGGCAACAGGATCGACAACACGCAGAGGAGGACCCGGCT
* * * *
19158810 GATCCTCGGCTTGCGCATGCTACCCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGTTT
261 GATCCTCGGCTTGCGCATCCTACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
19158875 GACTTAGACATACGAAGTTCATCAGACTTTGTTTCTGAACGTGGTTTGA
326 GACTTAGACATACGAAGTTCATCAGACTTTGTTTCTGAACGTGGTTTGA
19158924 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * * *
19158989 TGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GAC
66 TGTGCATAAACCCACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGG-CAGAC
*
19159053 GTAGTGCCTACCCGCCCGTCTGCCCGCCCGCTCATTTCGTCAGTTCGCTTAGGCATACGGAGTTC
130 GTAGTG----CCCG--C--CTGCCCGCCCGCTCATTTCGTCAGTTCGCATAGGCATACGGAGTTC
* * ** *
19159118 ATTCCCAGTCTAAGATTAGATCAG-ACTGAGGGTTACGGCAACAGGATCGACAGTACGCAGAGGG
187 ATTCCCAGTCTAAGATCAGA-CAGAACCGAGGGTTACGGCAACAGGATCGACAACACGCAGAGGA
* * * *
19159182 GGACTCGG-TCGATCGCT-GGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTC
251 GGACCCGGCT-GATC-CTCGGCTTGCGCATCCTACCCCTCTAGCCGGCTGAGCGCCCGCACGCTC
* *
19159245 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
314 GTTTCATGGGTTGACTTAGACATACGAAGTTCAT
19159279 TCCCAGTCTA
Statistics
Matches: 308, Mismatches: 35, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
374 124 0.40
375 1 0.00
378 4 0.01
380 1 0.00
381 1 0.00
382 173 0.56
383 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.24
Consensus pattern (374 bp):
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCATAAACCCACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCAGACG
TAGTGCCCGCCTGCCCGCCCGCTCATTTCGTCAGTTCGCATAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACAGAACCGAGGGTTACGGCAACAGGATCGACAACACGCAGAGGAGGACCCGGCT
GATCCTCGGCTTGCGCATCCTACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGACATACGAAGTTCATCAGACTTTGTTTCTGAACGTGGTTTGA
Found at i:19159294 original size:26 final size:26
Alignment explanation
Indices: 19159264--19159316 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19159254 GTTGACTTAG
19159264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19159290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19159316 G
1 G
19159317 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19160602 original size:26 final size:26
Alignment explanation
Indices: 19160566--19160618 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19160556 GTTGACTTAG
19160566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19160592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19160618 G
1 G
19160619 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19161879 original size:408 final size:400
Alignment explanation
Indices: 19161132--19161912 Score: 1055
Period size: 408 Copynumber: 1.9 Consensus size: 400
19161122 CACGTGAAGG
* * *
19161132 CTTAAGGGACCATTGTATGAATTTACAAGCCATTAATATGGCATTGGCATGCAAAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
* * *
19161197 TTTGCCTAAACCTACCTACCACCCTATCAATCCACGACGTACGCATCCCGTCTCTCTAGCAGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCAATCCACGACGTACGCATCCCGTCTCTCTAGCAGACG
* *
19161262 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGT
131 TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTCGCTTACGCATACGGAGTTCATTCCCAGT
* * * * * *
19161327 CTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGACCCCGCC
196 CTAAGATCGGACCGAACAGAGGGTTACGATAGCAAGATCGACAGCACGCAGAAGGGGACCCCGCC
* * * ** * *
19161392 GATCCCTGGCTTGTGCATGCCGCCCTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGTTT
261 GATCCCCGACTTGTGCATGCCGCCCCTCTAACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
*
19161457 GACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATCAGACTTTGTTTCTGAA
326 GACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATCAGACTTTGTTTCTGAA
19161522 TGTGGTTTGA
391 TGTGGTTTGA
*
19161532 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
* * * * * * *
19161597 TGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCA-AC
66 TGTGCCTAAACCCACCTACCACCCTATCAATCCACGACGTACGCATCCCGTCTCTCTAG-CAGAC
*
19161661 GTAGTGCCCGCCCGCCCGTCCGCCCACCCGCTCATTTCGTCGGTTCGCTTAGGCATACGGAGTTC
130 GTAGTGCCCGCCCG--C--CCG----CCCGCTCATTTCGTCGGTTCGCTTACGCATACGGAGTTC
* * * * * * *
19161726 ATTCCCAGTCTAAGATTGGACCGGATAGAGGGTTATGATAGTAAGATCGGCAGTACGCAGAAGGG
187 ATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTACGATAGCAAGATCGACAGCACGCAGAAGGG
* *
19161791 GA-CCCGACCGATCCCCGACTTGTGCAT-CCTGCCCCTCTAACCGGCTGAGCGCCTGCACGCTCG
252 GACCCCG-CCGATCCCCGACTTGTGCATGCC-GCCCCTCTAACCGGCTGAGCACCCGCACGCTCG
* * *
19161854 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCAT
315 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCAT
19161913 TCCCAGTCTA
Statistics
Matches: 327, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
400 126 0.39
401 2 0.01
402 1 0.00
404 3 0.01
407 6 0.02
408 189 0.58
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (400 bp):
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCAATCCACGACGTACGCATCCCGTCTCTCTAGCAGACG
TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTCGCTTACGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCGAACAGAGGGTTACGATAGCAAGATCGACAGCACGCAGAAGGGGACCCCGCC
GATCCCCGACTTGTGCATGCCGCCCCTCTAACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATCAGACTTTGTTTCTGAA
TGTGGTTTGA
Found at i:19161909 original size:26 final size:26
Alignment explanation
Indices: 19161872--19161924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19161862 GTTGACTTAG
* *
19161872 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19161898 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19161924 G
1 G
19161925 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19163674 original size:26 final size:26
Alignment explanation
Indices: 19163645--19163696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19163635 GTTGACTTAG
19163645 GCATACAG-AGTTCATTCCTAGTCTAA
1 GCATAC-GTAGTTCATTCCTAGTCTAA
*
19163671 GCATACGTAGTTCTTTCCTAGTCTAA
1 GCATACGTAGTTCATTCCTAGTCTAA
19163697 AATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCTAGTCTAA
Found at i:19166335 original size:26 final size:26
Alignment explanation
Indices: 19166299--19166351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19166289 GTTGACTTAG
*
19166299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19166325 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19166351 G
1 G
19166352 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19167218 original size:26 final size:26
Alignment explanation
Indices: 19167189--19167241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19167179 GTTGACTTAG
19167189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19167215 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19167241 G
1 G
19167242 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19167461 original size:890 final size:888
Alignment explanation
Indices: 19165542--19168993 Score: 4607
Period size: 890 Copynumber: 3.9 Consensus size: 888
19165532 ATCAGGGCAC
* * *
19165542 CATCGCCGGAGAACCTGACC-AGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGT
1 CATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG-GGTGT
* * *
19165606 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCAACAAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
19165671 CCTCAAGAACTCCCACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGACAGTAGCAATT
129 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * * * *
19165736 AAAGTGTCTGAAATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
194 AAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTGTA
* * * * *
19165801 GTTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAA
259 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAA
* * ** * *
19165866 ATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGA
324 TTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGA
* ** *
19165931 AAACGAGTTGTCTTGCCATGAAACTTCGCGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
389 AAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
19165996 CCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
454 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
19166061 ATCCACGGCTTCCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
519 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-------CGCCCGCCCGCTCGTTTC
* * * * *
19166126 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCAAGGGTTGCGG
577 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGG
* * * *
19166191 TAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCCCGCCCCTCT
642 CAGCAAGATCAACAGCACGCAGAAGGGGACCCGACCGATCCCTAGCTTGCACATCCCGCCCCTCT
* * *
19166256 GGCCGACTGACCGCCTGCACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
707 AGCCGACTGAGCGCCCGCACGCT-AGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
19166320 TCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCAGACCGAGGGGTGTGGTAGCAAATG
771 TCTAAGCATACGGAGTTC-TTCCCAGTCTAAGATC-GACCA-A-CGAGGGGTGTGGTAGCAAATG
19166385 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCGTCGGAG
832 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCGTC-GAG
* * * * * * * *
19166443 CATCACCGAAGAACCAGACCGATGGCGTTAGGGTTTCGATGATC-GGGGCGCC-GGGGGGTCTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGC
19166506 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
19166571 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
19166636 AGTGTCTGAAATGGGGAAACGTTTTTCAAATGGTCACAAAATCTTATAGACCTCGAGTTTGTGGC
196 AGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTGTAGC
* *
19166701 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAGGCTTGGGGCCAAAATT
261 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAATT
* *
19166766 CCTTCTGAAAAAATTTTAAAAAATCCAGAATCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
326 CCTTCCGAAAAAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
19166831 ACGAGTCGTCTTGCCTTGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
391 ACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
19166896 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
456 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
19166961 CCACGGCTTGCGCATCCGGTCTCTCTGGCCGATGTAGT-GCCCGCCCGTTCGTTTCATCGGTTGG
521 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
19167025 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCAGCAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAGAT
* * ** *
19167090 CAACAGCACGCATAAGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTG
651 CAACAGCACGCAGAAGGGGACCCGACCGATCCCTAGCTTGCACATCCCGCCCCTCTAGCCGACTG
*
19167155 AGCGCCTGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
716 AGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
19167220 CGGAGTTCGTTCCCAGTCTAAGATCAGACCGAACTGAGGGGTGTGGTAGCATATGCTGGGCTCGG
781 CGGAGTTC-TTCCCAGTCTAAGATC-GACC-AAC-GAGGGGTGTGGTAGCAAATGCTGGGCTCGG
19167285 GCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCGTCAGAG
842 GCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCGTC-GAG
* *
19167333 CATCACCGGAGAACCTGACCGACGGCGTTGGGGTTTCGATGATC-GGGGGGCC-GGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGC
19167396 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
*
19167461 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
19167526 AGTGTCTGAAATGGGGAAACATTTTTCAAATGGTCACAAAATCTTGTAGACCTCGAGTTTGTAGC
196 AGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTGTAGC
* *
19167591 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAATT
261 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAATT
* *
19167656 CCTTCTGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
326 CCTTCCGAAAAAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
19167721 ACGAGTCGTCTTGCCTTGAAACTTAACGTCTTGCCTTGAAACTTAACGTGAAGGCTTAAGGGACC
391 ACGAGTCGTCTTG-C------C---A----------TGAAACTTAACGTGAAGGCTTAAGGGACC
* *
19167786 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGACTAAAC
436 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* *
19167851 CCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
501 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCC
* * *
19167916 CGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCGTA-GGAGTTCATTCCTAGTCTAAGATCAGA
563 CG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * ** * ** *
19167980 TCGGACCGAGTGTAGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCTAGCT
624 TCAGACCGAGGGTTGCGGCAGCAAGATCAACAGCACGCAGAAGGGGACCCGACCGATCCCTAGCT
* * * * * * *
19168045 TGCGCAT-CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCAT
689 TGCACATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCAT
*
19168109 ACGGAGTTCATTCCCAGTCTAAG-AT-CGGA--------C---C---G---GA-C--CGAGGGTT
754 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTCCCAGTCTAAGATCGACCAACGAGGGGT
* ** * * * * * * * *
19168152 GCGACAGCACATGCTAGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTTGTCGGTGCA-C--CA
819 GTGGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCG
19168214 TC--G
884 TCGAG
* * *
19168217 --T---CGGAGAACCTGACAGGCGG-ATTGGGGTTCCGAGGATCGGGGGGGCCGGGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGC
* * *
19168276 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
* *
19168341 TCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * * *
19168406 AGTGTCTGAAATTGGGACACTTTTTTCGAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTGTAGC
* ** *
19168471 TGAATTTTTTTGTGCAGGCCAACAAAAATACAAGGATCATGTCTACCATCCTTGGGGCCAAAACT
261 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAATT
* * **
19168536 CCTTCCAAAAAAATTTTAAAAAATCCCA-AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
326 CCTTCCGAAAAAATTTTAAAAAAT-CCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAA
* * *
19168600 AACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
19168665 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
455 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
19168730 TCCACGGCTTGCGCAT-CCGATCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
520 TCCACGGCTTGCGCATCCCG-TCTCTCTGGCCGACGTAGT-------CGCCCGCCCGCTCGTTTC
* *
19168794 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGG
577 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGG
* * * ** * ** * *
19168859 CAGCAAGATCGACAGCACGTAAAAAAGGTCCCGACCGATCCCTAGCTTGTGCATCCTGCCCTTCT
642 CAGCAAGATCAACAGCACGCAGAAGGGGACCCGACCGATCCCTAGCTTGCACATCCCGCCCCTCT
* *
19168924 AGCCGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCGCAGT
707 AGCCGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
19168989 CTAAG
772 CTAAG
19168994 ATCAGACCGG
Statistics
Matches: 2304, Mismatches: 205, Indels: 123
0.88 0.08 0.05
Matches are distributed among these distances:
859 3 0.00
860 170 0.07
861 81 0.04
862 73 0.03
864 9 0.00
870 1 0.00
873 1 0.00
878 15 0.01
879 26 0.01
880 317 0.14
881 3 0.00
882 1 0.00
884 1 0.00
887 3 0.00
889 3 0.00
890 746 0.32
891 3 0.00
894 1 0.00
895 2 0.00
897 1 0.00
898 455 0.20
899 5 0.00
900 7 0.00
901 33 0.01
902 2 0.00
905 1 0.00
910 146 0.06
914 9 0.00
915 2 0.00
916 75 0.03
917 82 0.04
918 27 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACCTCGAGTTTGTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAATT
CCTTCCGAAAAAATTTTAAAAAATCCAGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAGAT
CAACAGCACGCAGAAGGGGACCCGACCGATCCCTAGCTTGCACATCCCGCCCCTCTAGCCGACTG
AGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCTTCCCAGTCTAAGATCGACCAACGAGGGGTGTGGTAGCAAATGCTGGGCTCGGGCAT
GTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCGTCGTCGAG
Found at i:19167750 original size:20 final size:20
Alignment explanation
Indices: 19167727--19167769 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
19167717 GAAAACGAGT
19167727 CGTCTTGCCTTGAAACTTAA
1 CGTCTTGCCTTGAAACTTAA
19167747 CGTCTTGCCTTGAAACTTAA
1 CGTCTTGCCTTGAAACTTAA
19167767 CGT
1 CGT
19167770 GAAGGCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (20 bp):
CGTCTTGCCTTGAAACTTAA
Found at i:19169846 original size:26 final size:26
Alignment explanation
Indices: 19169809--19169881 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
19169799 TTAGGAATAC
19169809 GGAGTTCATTCCCAGTCTAAGCATAT
1 GGAGTTCATTCCCAGTCTAAGCATAT
*
19169835 TGAGTTCATTCCCAGTCTAAGCATAT
1 GGAGTTCATTCCCAGTCTAAGCATAT
*
19169861 GGAGTTCATTCCCTGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
19169882 ATCGGACCGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATAT
Found at i:19170756 original size:26 final size:26
Alignment explanation
Indices: 19170720--19170772 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19170710 GTTGACTTAG
19170720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19170746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19170772 G
1 G
19170773 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19171953 original size:26 final size:26
Alignment explanation
Indices: 19171904--19171955 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19171894 TTGACTTAGG
*
19171904 CATACGGAGTTCATTCACAGTCTAAC
1 CATACGGAGTTCATTCACACTCTAAC
* **
19171930 CATACGTAGTTCATTCTTACTCTAAC
1 CATACGGAGTTCATTCACACTCTAAC
19171956 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCACACTCTAAC
Found at i:19172804 original size:22 final size:22
Alignment explanation
Indices: 19172776--19172819 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
19172766 CTTAGGCATA
19172776 CGGAGTTCATTCCCAGTCTAAG
1 CGGAGTTCATTCCCAGTCTAAG
*
19172798 CGGAGTTCATTCCTAGTCTAAG
1 CGGAGTTCATTCCCAGTCTAAG
19172820 ATCAGATCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (22 bp):
CGGAGTTCATTCCCAGTCTAAG
Found at i:19173213 original size:882 final size:871
Alignment explanation
Indices: 19171503--19173772 Score: 2960
Period size: 882 Copynumber: 2.6 Consensus size: 871
19171493 ACTGAGGGTT
* * *
19171503 AAGTTTCAAAAATCT-TGAAAAATAGAAAATGAGTCGCCTTCCCATGAAACTTCACGTGAAGGCT
1 AAGTTTCAAAAAT-TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
19171567 TAAGGGACAATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAAAAATATGAAGAT
65 TAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
19171632 GTGCCTAAACCCACCTACCACCCTATTGATCATTGGCTTACGTATCCCGTCTCTCTGGCCGGCGT
129 GTGCCTAAACCCACCTACCA-CCTATCGATCA-TGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
19171697 AGTGCCCGCTAGCCCGCCCGCCCGCTTGTTTCATCAGTTGGATTAGGCATACAGAGTTCATTCCC
192 AGTG-CC-C-A-CCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
* **
19171762 AGTCTAAGATTAGACCGAACTGAGGGTTGTGGCAGCAGGATCGGTA-AGCACACAGAGGGGGACC
252 AGTCTAAGATCAGACCG-ACTGAGGGTT-ACGCAGCAGGATC-G-ACAGCACACAGA-GGGGACC
*
19171826 CGGCCGATCCTCAGCTTGCGCATCCCA-CCCTTCTGGCTGGCTGAGCGGCCGCACGCTCGTTTCG
312 CGGCCGATCCTCAGCTTGCGCAT-CCAGCCCTTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
19171890 TGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAACCATACGTAGTTCATTCTTACTCTAA
375 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A--A-GCGGAGTTCATTCCTAGTCTAA
* * *
19171955 CATCGGATCGGACCGAGGGTTGCGACAGCACATGCT--GC-C-GCAT-T--T-TTC-----TTC-
436 GATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGTTCGTTTTTTCT
*
19172006 ACCGGGGCACGATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGGAGATCGGGGGGGCCGG
501 TCCGGGGCACGATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGGAGATCGGGGGGGCCGG
* *** *
19172071 AGGGGGTGTGCACACATGATGTGCCGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
566 AGGGGGTGTG-ACACAGGATGTGAAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCC
* *
19172136 CTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
630 CTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
*
19172201 GTACCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCG
695 GTACCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCG
* * *
19172266 TGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
760 TGTTTTTAGCTGAATTTTTTTGCGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
19172331 GG-CAAAA-ATTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
825 GGACAAAACATT--TTCCAAAAAAAATTTAAAAAATCCCAAACCGTAAA
*
19172378 AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTT
1 AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
19172443 AAGGGACCATTGTATGAATTTACAAGCCA-AAAAATTGGCATTGGCATGCAGAAATATGATGATG
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATG
* * *
19172507 TGCCTAAACCCACCTACCATCCTATCGATCCATGACTTGCGCATCCCGTTTCTCTGGCCGACGTA
130 TGCCTAAACCCACCTACCA-CCTATCGAT-CATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
*
19172572 GTGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGGATACAGAGTTCATTCCCAGTCT
193 GTGCCCACCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
* ** * **
19172637 AAGATCAAACCAGACCAAGGGTTACAGCAGCAGGATTGACAGCATGCAGAGGGGACCCGGCCGAT
257 AAGATCAGACC-GACTGAGGGTTAC-GCAGCAGGATCGACAGCACACAGAGGGGACCCGGCCGAT
* *
19172702 CCCCAGCTTGCGCATCCAGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
320 CCTCAGCTTGCGCATCCAGCCCTTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
19172767 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCGGAGTTCATTCCTAGTCTAAGATCAGATCGGAA
384 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCGGAGTTCATTCCTAGTCTAAGATCGGATCGGAA
* *
19172832 CAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGG
449 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCT-GT-TCGT-TTTTTCTTC--CGGGG
* * * * *
19172897 CATC-ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCTGG-GGGGT
508 CA-CGATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGGAGATCGGGGGGGCCGGAGGGG-
19172959 GTGTG-CACAGGATGTGAAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATC
571 GTGTGACACAGGATGTGAAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATC
*
19173023 AAACC-TGTAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
636 AAACCTTG-AAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA-C
* * *
19173087 CATTAAAGTGTCTGAAATGATGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTT
699 CATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGTGTT
* *
19173152 TTTAGCTGAATTTTTTTGCGCACGCCAAAAAAAATATAAGGATCACGTCTACCCAGTTTGGGGAC
764 TTTAGCTGAATTTTTTTGCGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAC
* *
19173217 AAAACATTTTTCAAAAAAAATTTAAAAAATCCTAAACCGTAAA
829 AAAACATTTTCCAAAAAAAATTTAAAAAATCCCAAACCGTAAA
* * *
19173260 AAGTTTAAAAAATCATGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
1 AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
19173325 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
66 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
19173390 GCCTAAACCCACCTACCACCTTATCGATTCACGGCATGCGCATCCCGTCTCTCTAGCCGGCGTAG
131 GCCTAAACCCACCTACCACC-TATCGA-TCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
19173455 TGCTCACCCG--C-ACGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
194 TGCCCACCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * ** *
19173517 GATCGGACCGGACTGAGGGTTACGACAGTAGGATCGACAGTACACAAAGGTGGACCCGATCAATC
259 GATCAGACC-GACTGAGGGTTACG-CAGCAGGATCGACAGCACACAGAGG-GGACCCGGCCGATC
* * * * *
19173582 CTCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGACT
321 CTCAGCTTGCGCATCCAGCCCTTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
19173647 TAGACGTACGGAGTACATTCCCAGTCTAAGTATATGGAGTTCATTCCCAGTCTAAGATCGGA-CC
385 TAGGCATACGGAGTTCATTCCCAGTCTAAG----CGGAGTTCATTCCTAGTCTAAGATCGGATCG
* *
19173711 GAACCGAGGGTTGCAGCAGCACATGCTGGGCTTGAGCATGTGCTAGTATCGTGTTTTTCTTC
446 GAA-CGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCT-GT-TCGT-TTTTTCTTC
19173773 ACCGAGGCAC
Statistics
Matches: 1228, Mismatches: 122, Indels: 82
0.86 0.09 0.06
Matches are distributed among these distances:
864 48 0.04
865 1 0.00
866 2 0.00
867 5 0.00
868 99 0.08
869 14 0.01
870 80 0.07
871 2 0.00
872 2 0.00
873 7 0.01
874 87 0.07
875 91 0.07
877 1 0.00
878 84 0.07
879 95 0.08
880 3 0.00
881 115 0.09
882 343 0.28
883 99 0.08
884 49 0.04
885 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCTATCGATCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
CCCACCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
TCAGACCGACTGAGGGTTACGCAGCAGGATCGACAGCACACAGAGGGGACCCGGCCGATCCTCAG
CTTGCGCATCCAGCCCTTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCGGAGTTCATTCCTAGTCTAAGATCGGATCGGAACGAGGGT
TGCGGCAGCACATGCTGGGCTCGGCATGTGCTGTTCGTTTTTTCTTCCGGGGCACGATCGCCGGA
GAACCTGACCGACAGCATTGGGGTTCCGGAGATCGGGGGGGCCGGAGGGGGTGTGACACAGGATG
TGAAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTACCATTAAAGTGTCCGAAA
TGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTT
GCGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACATTTTCCAAAAA
AAATTTAAAAAATCCCAAACCGTAAA
Found at i:19174170 original size:26 final size:26
Alignment explanation
Indices: 19174140--19174192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19174130 GTTGACTTAG
19174140 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
19174166 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19174192 G
1 G
19174193 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19175853 original size:864 final size:858
Alignment explanation
Indices: 19174173--19176642 Score: 3177
Period size: 894 Copynumber: 2.8 Consensus size: 858
19174163 TAAGCATATG
* * *
19174173 GAGTTCATTCTCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAACACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
19174238 ATGTGCTGGTGCCGCATTTTTCTTCG-CTGAGG--CA-C----CATCGTTGGAGAACCTGACCGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGACCATCGGAGCATCGCTGGAGAACCTGACC-A
* * * * * * *
19174295 CGGCATTAGGGTCCCGGTGATCGGGCGGGCCGGAAGGGTGTGTGCGCACATGAGGTGCGATGGAT
129 AGGCATTGGGGTTCCGGCGATCGGG-GGGCCGG-GGGGTGTGTGCGCACATGATGTGCGATGGGT
*
19174360 GCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTT
192 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC-C-CCCTT
*
19174425 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
254 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * **
19174490 TTTTTTCAAATGGTCACAGAATCCTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTATGCACACC
319 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* *
19174555 AACCAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTCAA
384 -ACCAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT-CAAAAAAATTTTCAA
* * * *
19174620 AAATCCCGAACCGCAAAAA-TTTTCAAAAATCATGAAAAATAGAAAAATGAGTCGTCTTGCCCTG
447 AAATCCCAAACCGCAAAAAGTTTT-AAAAATCGTGAAAAATAG-AAAACGAGTCGT-TTGCCATG
* * *
19174684 AAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTAGCA
509 AAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19174749 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCC
574 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
19174814 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCTGCTCATTTCGTCGGTTGGCTTAGGC
639 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CT--C-G----TTTCGTCGGTTGGCTTAGGC
* * * *
19174879 ATACGGAGTTGACTTCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGTATGCAGAGGGGG
696 ATACGGAGTTCA-TTCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAACAGGATGCAGAGGGGG
*** * * *
19174944 ACCCGACCGATCTTGGGCTTGTGCATCCCGCCCCTCTGGCC-G-G-CTGAGCGCCCGCATGCTCA
760 ACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCT-GCCGGCGACTGAGCGCCCGCACGCTCA
19175006 TTTCGTGGGTTGAC-T-TA-G-G-C-A-AA-C-A-
824 TTTCGTGGGTTGACTTATACGAGTCTATAAGCAAC
* *
19175031 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
19175096 ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGTACCATTGTCGGAGCATCGCTGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-ACCA---TCGGAGCATCGCTGGAGAACCTGAC
19175161 CAATGGCATTGGGGTTCCGGCGATCGGGGGAGCCGGGGGGTGTGTGCGCACATGATGTGCGATGG
127 CAA-GGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGTGTGTGCGCACATGATGTGCGATGG
* * *
19175226 GTGCTGGTACTTGGGCCTTATACTGGCTCCCTATCCCTCATCAAACCTTGAGAACTC-CCCCCTT
190 GTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACCCCCTT
19175290 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
254 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** *
19175355 TTTTTGAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
319 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
*
19175420 ACCAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCAAAATAAATTTT-AA
384 ACCAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCAAAA-AAATTTTCAA
* *
19175484 AAATTCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTTTGGCCATTA
447 AAA-TCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTTT-GCCATGA
*
19175549 AACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
510 AACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
19175614 GCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
575 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
19175679 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAAT
640 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
19175744 TCATTCCCAGTCTAAGATTAGA-TGAGACCGAGGGTTGTGGCAACAGGATCGGCAGCATGTAGAG
705 TCATT-CCAGTCTAAGATCAGACTG-GACCAAGGG-T-T-GCAACAGGAT-----GCA-G-AG-G
** * *
19175808 GAGGACCCTTCTGATCCCCGACTTGCGCATCCCG-CCC-CT-CCGGCTGACTGAGCTCCCGCACG
757 G-GGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCGGC-GACTGAGCGCCCGCACG
* *
19175870 TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC
820 CTCATTTCGTGGGTTGACTT----ATAC-GAG-----T-CTA---TAAGCA-AC
*
19175924 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
19175989 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-ACCAT---CGGAGCATCGCTGGAGAACCTGA
* * * *
19176054 CCGAAGGCATTGGGGTTCCGACGATCGGGAGGCCGGGGGGTGTG-G-ACACATGATGTGCGAAGG
126 CC-AAGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGG
*
19176117 GTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTCGAGAACTCACACCCCC
190 GTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACT--CACCCCC
19176182 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-AGCCATTAAAGTGTCTGAAATGGGGAC
252 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19176246 ACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATG
317 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
** * * *
19176311 CCAAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTC
382 CC-ACCAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCAAAAAAATTTTC
** ** * * *
19176376 AAAAAATCTGAAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGCCTTGCCAT
445 -AAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG-TTTGCCAT
* *
19176441 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGC
508 GAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
19176506 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
573 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19176571 TGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCTCGTTTCG-CGGGTTGACTTAGGCATACGG
638 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGG
19176635 AGTTCATT
702 AGTTCATT
19176643 TGCAGTCCAA
Statistics
Matches: 1426, Mismatches: 108, Indels: 120
0.86 0.07 0.07
Matches are distributed among these distances:
855 4 0.00
856 51 0.04
857 1 0.00
858 91 0.06
859 9 0.01
860 1 0.00
861 3 0.00
863 4 0.00
864 191 0.13
865 205 0.14
866 9 0.01
867 8 0.01
868 133 0.09
869 46 0.03
874 2 0.00
876 1 0.00
877 1 0.00
884 1 0.00
885 1 0.00
889 2 0.00
890 4 0.00
891 65 0.05
892 2 0.00
893 149 0.10
894 433 0.30
895 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (858 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGACCATCGGAGCATCGCTGGAGAACCTGACCAAG
GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCACCAAAA
TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCAAAAAAATTTTCAAAAATCCCAA
ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTTTGCCATGAAACTTCACGTA
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTC
TAAGATCAGACTGGACCAAGGGTTGCAACAGGATGCAGAGGGGGACCCGACCGATCCCCGACTTG
CGCATCCCGCCCCTCTGCCGGCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATACGA
GTCTATAAGCAAC
Found at i:19175928 original size:26 final size:26
Alignment explanation
Indices: 19175892--19175944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19175882 GTTGACTTAG
*
19175892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19175918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19175944 G
1 G
19175945 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19178069 original size:744 final size:740
Alignment explanation
Indices: 19175862--19178141 Score: 3357
Period size: 744 Copynumber: 3.1 Consensus size: 740
19175852 TGACTGAGCT
* *
19175862 CCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
19175927 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
* * * *
19175992 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCG
131 GTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCG
* *
19176057 AAGGCATTGGGGTTCCGACGATCGGGAGGCCGGGGGGTGTG-GACACATGATGTGCGAAGGGTGC
196 ACGGCATTGGGGTTCCGACGATCGGG-GGCCGGGGGGTGTGCG-CACATGATGTGCGATGGGTGC
* *
19176121 TGGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
19176186 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-AGCCATTAAAGTGTCTGAAATGGGGACACTT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-T
* *
19176250 TTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
19176315 AAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTCAAAA
453 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAA
* ** * * *
19176380 AATCTGAAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGCCTTGCCATGAAA
517 AATCTCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19176445 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGT
582 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
19176510 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
19176575 TCTCTGGCCGACGTA-----G--TGCCCG
712 TCTCTAGCCGACGTATGCCCGCCAGCCCG
* ** * *
19176597 CCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTTGCAGTCCAAGCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
**
19176662 GTTCATTCTGAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
* * * * * *
19176727 GTGCTGGTGCTGCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGTCAGAGAACCTAATCG
131 GTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCG
* * * * *
19176792 GCGGCATTGGGGTTTCGACGATCGGGGAGGCCGGGGGGTGTGCACACATAATGTGCGATTGGTGC
196 ACGGCATTGGGGTTCCGACGATC-GGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19176857 TGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTGCATCAAACCTTGAGAACTCACACCCCCTTA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
19176921 AAAAGCATTTTGGGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGC
323 AAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19176986 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCA
387 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19177051 AAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCTAAAACTCTTTCCAAAAAAATTTTAAAA
452 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * * *
19177116 AATCTCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
517 AATCTCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19177181 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCGTGC
582 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
19177246 AGATATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCTTC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
19177311 TCCCTAGCCGACGTACTGCCCGCCAGCCCG
712 TCTCTAGCCGACGTA-TGCCCGCCAGCCCG
* *
19177341 CCCGCACGCTCGTTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAATCATACGG
1 CCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
19177406 AGTTCATTCCCAGTCTCAGATCGGACCGGATCAAAGGTTGCGGTAGCACATGCTGGGCTTGAGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
*
19177471 TGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGTCAGAGAACCTGACC
130 TGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACC
* * ** *
19177536 GACGACATTAGGGTTCCGGTGATCGGGGGACCAGTGGGGTGTGCGCACATGATGTGCGATGGGTG
195 GACGGCATTGGGGTTCCGACGATCGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
19177601 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19177666 AAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19177731 TTTTGCAAATGGAT-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGGGCATCCC
388 TTTT-CAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** *
19177794 AACAAGTATACAAGGATCACGTCTACCAAGTTTGGGGCCAATAA-TCCTTCCAAAAAAATTTTAA
451 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCAAAAAAATTTTAA
* * * **
19177858 AAAATCCCAAACCGCAAAAAGTCTT-GAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCTGTG
515 AAAATCTCAAACCGCAAAAAGT-TTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19177922 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGCCATAAAAATGGCATTGGCA
579 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
19177987 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCC
644 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19178052 GTCTCTCTAGCCGACGTAGTGCCCGCCGGCTCG
709 GTCTCTCTAGCCGACGTA-TGCCCGCCAGCCCG
* * ** *
19178085 CCCGCCCGTTCGTTTCGTCAG-TGAGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19178142 ATCGGACCGG
Statistics
Matches: 1380, Mismatches: 143, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
735 195 0.14
736 294 0.21
737 141 0.10
738 28 0.02
742 4 0.00
743 38 0.03
744 360 0.26
745 316 0.23
746 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (740 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
TCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TAGCCGACGTATGCCCGCCAGCCCG
Found at i:19178310 original size:26 final size:26
Alignment explanation
Indices: 19178274--19178324 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19178264 GTTGACTTAG
* *
19178274 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19178300 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19178325 GGATTGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19179568 original size:873 final size:860
Alignment explanation
Indices: 19177399--19180059 Score: 3371
Period size: 873 Copynumber: 3.0 Consensus size: 860
19177389 CCAGTCTAAT
* * * * * * * * *
19177399 CATACGGAGTTCATTCCCAGTCTCAGATCGGACCGGATCAAAGGTTGCGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGC
* * * * *
19177464 TTGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGTCAGAGAA
66 TCGGGCATGTGCTGATGCTGCATTTTTCTTCGTCGGGGCACCAT---C--A-C-----CGGAGAA
* **
19177529 CCTGACCGACGACATT-AGGGTTCCGGTGATC--GGGGGACCAGTGGGGTGTGCGCACATGATGT
120 CCTGACCGGCGACATTGA-GGTTCCGGCAATCAAGGGGG-CCAG-GGGGTGTGCGCACATGATGT
* *
19177591 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCA
182 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19177656 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
*
19177721 TGGGGACACTTTTTGCAAATGGAT-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
312 TGGGGACACTTTTTGCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTT
* * * ** * * * *
19177784 TGGGCATCCCAACAAGTATACAAGGATCACGTCTACCAAGTTTGGGGCCAATAA-TCCTTCCAAA
376 TGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACAAAGTTTGGGGCCAA-AACTACTTCCAAA
* * * * * * *
19177848 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTCTT-GAAAATCATGAAAAATAGAAAACGAGTTG
440 AAAAGTTTAAAAATTCCCGAACCGTAAAAAGT-TTAAAAAATCATGAAAAATAGAAAACAAGTCG
** * *
19177912 TCTTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGCCATAAAAAT
504 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
19177977 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
569 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
19178042 TGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCGGCTCGCCCGCCCGTTCGTTTCGTCAG-
634 TGCGCATCCCGTCTCTCTGGCCGGCGTAATG-CC-CC--C-C-CCCGCCCGCTCATTTCATCGGT
* * * * ** *
19178106 TGAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATTGAA-GGTTGTGGCAGC
693 TG-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGA-CCAAGGGTTGCGGCAGC
* * ** * * * * * *
19178170 AGGATCGGCAGCACGCAGAGGTGGACCCGACCGATCCTCGGCTTACGCATCCCACCCCTTTGGCC
756 AAGATCGACAGCACGCAGAGAAGGACCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * * *
19178235 GGTTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGG
821 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
19178275 CATACGGAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACC
1 CATACGGAG----TT-C-A-T-T---C---C------CA-----A-TCTAAGATCGGATCAGACC
* *
19178340 GAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGC
40 GAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGATGCTGCATTTTTCTTCGTCGGGGC
* * * ** * *
19178405 ACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTGTG
105 ACCATCACCGGAGAACCTGACCGGCGACATTGAGGTTCCGGCAATCAAGGGGGCCAGGGGGTGTG
* * * *
19178470 CGCACATGATGTGCAATGGGTGCTTGTTCTTGGCCCTTATTTTGGCCTCCTATCCCTCATCAAAC
170 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
19178535 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTA
235 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
19178600 AAGTGTCTAAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAG
300 AAGTGTCTAAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAG
* *
19178665 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAAC
365 CTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACAAAGTTTGGGGCCAAAAC
* *
19178730 TATTTTCAAAAAAAGTTTAAAAATTCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
430 TACTTCCAAAAAAAGTTTAAAAATTCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
19178795 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
495 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
19178860 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATTTACCACCCTATCGA
560 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
19178925 TCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAATGCCCACCCGCCCGCCCGCTCATTTCT
625 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCC-CCC-CCCGCCCGCTCATTTCA
* * *
19178990 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGGC
688 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGACCAAGGGTTGCGGC
* * * * *
19179055 AGCAAGATTGGCAGCACGCAGAGAGGGACCCGGCCGAGCCCCGACTTGCGCATCTCGCCCCTCTG
753 AGCAAGATCGACAGCACGCAGAGAAGGACCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTG
19179120 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
818 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
19179163 CATACGAAGTTCATTCCCAATCTAAGATCGGA-CAAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 CATACGGAGTTCATTCCCAATCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTAGG
*
19179227 CTCGGGCATGTGTTGATGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGATGCTGCATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGA
* **
19179292 ACCTGACCGGCGACATTGAGGTTCTGGCAATCAAGGGGGCCAGGGGGTGTGCGCGTATGATGTGC
119 ACCTGACCGGCGACATTGAGGTTCCGGCAATCAAGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* *
19179357 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
184 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19179422 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
* *
19179487 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
314 GGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGT
* *
19179552 GCATGCCAAAAAAAATAAAAGGATCATGTCTACAAAGTTTGGGGCTAAAACTCCTTCCAAAAAAA
379 GCATGCCAAAAAAAATAAAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTACTTCCAAAAAAA
* * * * * *
19179617 TTTTAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTTGTCTTG
444 GTTTAAAAATTCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
*
19179682 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
19179747 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
574 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
19179812 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCA
639 ATCCCGTCTCTCTGGCCGGCGTAATGCCCCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCA
* * *
19179877 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCA
704 TACGGAGTTCATTCCCAGTCTAAGATAGAACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCA
* * * * * *
19179942 CGTAGAGAAGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
769 CGCAGAGAAGGACCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
19180007 TACGCTCGTTTCGTGGGTTGACTTAGG
834 CACGCTCATTTCGTGGGTTGACTTAGG
*
19180034 CATACGGAGTTCATTCCCATTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
19180060 CATACGGTGT
Statistics
Matches: 1578, Mismatches: 159, Indels: 101
0.86 0.09 0.05
Matches are distributed among these distances:
861 1 0.00
862 81 0.05
863 1 0.00
868 2 0.00
870 2 0.00
871 193 0.12
872 2 0.00
873 517 0.33
874 1 0.00
876 9 0.01
877 1 0.00
880 3 0.00
881 2 0.00
882 2 0.00
883 2 0.00
884 3 0.00
887 2 0.00
888 167 0.11
889 3 0.00
890 3 0.00
891 234 0.15
892 261 0.17
893 5 0.00
896 3 0.00
897 1 0.00
899 1 0.00
902 76 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (860 bp):
CATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGC
TCGGGCATGTGCTGATGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGCG
ACATTGAGGTTCCGGCAATCAAGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTT
GCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATAAAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTACTTCCAAAAAAAGTTTAAAAATTC
CCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAATGCCCCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATAGAACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGAAGGA
CCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
GTGGGTTGACTTAGG
Found at i:19180062 original size:26 final size:26
Alignment explanation
Indices: 19180033--19180085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19180023 GTTGACTTAG
*
19180033 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19180059 GCATACGGTGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19180085 G
1 G
19180086 ATCGGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19182166 original size:714 final size:714
Alignment explanation
Indices: 19180799--19182251 Score: 2082
Period size: 714 Copynumber: 2.0 Consensus size: 714
19180789 AAGCATGCAA
* * *
19180799 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGATGTGGTAGCATATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGAATGTGGCAGCACATGCTGGGCTCGGGCA
* * * *
19180864 TGTGCTGGTGCCACATTTTTCTTTGCCGGGGCATCGTCGTCGGAGCATCACCGAAGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTGACC
* * * * * *
19180929 GACGGCGTTGGGGTTTTGATGATCTTGGGGCCGAGGGGTGTGCGCACATGATATGCGAAGGGTGC
131 GACGGCATTGGGGTTTGGATGATCTGGGGGCCGAGGGGTGAGCACACATGATATGCGAAGGGTAC
*
19180994 TGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
196 TGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
19181059 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTTTAAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTAAAATGGGGACACTT
* *
19181124 TTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
19181189 CAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAA
391 AAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAA
* * *
19181254 ATCGCGAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAAC
456 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTTGCCATGAAAC
*
19181319 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATAGCATTGGAACATA
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG-ACATA
* * * * **
19181384 GAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCAATACACGGCTTGTGCAACCCGTCT
585 GAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCAATACAAGACTTCCGCAACCCGTCT
19181449 CTCTGGCCGACATAGTGCCCACCCGCCCGACCG-C-TCGTTTCGTCAGTTGGCTTAGGCATACGG
650 CTCTGGCCGACATAGTGCCCACCCGCCCGACCGCCTTCGTTTCGTCAGTTGGCTTAGGCATACGG
* * * *
19181512 AGTTCATTCCCAGTCTAAGATCGGATCAGGCTGA-GAATTTCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGAATGT-GGCAGCACATGCTGGGCTCGGGC
* * *
19181576 ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTGAC
* * * *
19181641 CGGA-GGCATTGGGGTTTCGGA-GAT-TGGGGGGGCCGGGGGGGTGAGCACACATGATGTTCGAT
130 C-GACGGCATTGGGGTTT-GGATGATCT--GGGGGCC-GAGGGGTGAGCACACATGATATGCGAA
* *
19181703 GGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
190 GGGTACTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19181768 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAATTAAAGTGTCTCAAATGGG
255 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGAC-ATTAAAGTGTCTAAAATGGG
* *
19181832 GACACTTTTTTCAAATGGTC-CAAAAATCTTGTAGACTTCAAGTTTTTAGCTGAA-TTTTTTGTG
319 GACACTTTTTTCAAATGGTCAC-AAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19181895 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAATCTCCTTCCGAGAAAAT
383 CATGCCAAAAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAT
* * *
19181960 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGC
448 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTTGC
* *
19182025 CCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT
* * * *
19182090 GG-CATGCAGAAATATGAAGATGTTCCTAAACTAACCTACCACTCTATCGAT-CTAAGACTTCCG
578 GGACAT--AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCAATAC-AAGACTTCCG
* * * * * * *
19182153 CATCCGGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCTGTTCGTTTCGTCGGTTGGC
640 CAACCCGTCTCTCTGGCCGACATAGTGCCCACCCGCCCGACCGCC--TTCGTTTCGTCAGTTGGC
*
19182218 TTAGGTATACGG
703 TTAGGCATACGG
* *
19182230 ATTTCATTCCTAGTCTAAGATC
1 AGTTCATTCCCAGTCTAAGATC
19182252 AGACCAGACT
Statistics
Matches: 656, Mismatches: 69, Indels: 25
0.87 0.09 0.03
Matches are distributed among these distances:
712 8 0.01
713 127 0.19
714 282 0.43
715 192 0.29
718 47 0.07
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (714 bp):
AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGAATGTGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTGACC
GACGGCATTGGGGTTTGGATGATCTGGGGGCCGAGGGGTGAGCACACATGATATGCGAAGGGTAC
TGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGACATAG
AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCAATACAAGACTTCCGCAACCCGTCTC
TCTGGCCGACATAGTGCCCACCCGCCCGACCGCCTTCGTTTCGTCAGTTGGCTTAGGCATACGG
Found at i:19182431 original size:26 final size:26
Alignment explanation
Indices: 19182380--19182432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19182370 GTTGACTTAG
* * *
19182380 GCATACGTAGTTCATTCCCCGTCTAA
1 GCATACCTAGTTCATTCCCAGCCTAA
19182406 GCATACCTAGTTCATTCCCAGCCTAA
1 GCATACCTAGTTCATTCCCAGCCTAA
19182432 G
1 G
19182433 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACCTAGTTCATTCCCAGCCTAA
Found at i:19183288 original size:26 final size:26
Alignment explanation
Indices: 19183252--19183304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19183242 GTTGACTTAG
*
19183252 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19183278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19183304 G
1 G
19183305 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19184903 original size:908 final size:902
Alignment explanation
Indices: 19181504--19187602 Score: 7745
Period size: 891 Copynumber: 6.8 Consensus size: 902
19181494 GTTGGCTTAG
* * ** ** *
19181504 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGG-CTGAGAATTTCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGA-CCGGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * *
19181568 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGCAGCATC-GCGGAG
* * * * * *
19181633 AACCTGACCGGAGGCATTGGGGTTTCGGAGATTGGGGGGGCCGGGGGGGTGAGCACACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19181698 TCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19181763 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTCAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19181828 TGGGGACACTTTTTTCAAATGGTC-CAAAAATCTTGTAGACTTCAAGTTTTTAGCTGAA-TTTTT
323 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19181891 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAATCTCCTTCCGAGA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
** * *
19181956 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19182021 TTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * * * *
19182086 CATTGGCATGCAGAAATATGAAGATGTTCCTAAACTAACCTACCACTCTATCGATCTAAGACTTC
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
19182151 CGCATCCGGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCTGTTCGTTTCGTCGGTTG
647 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * *
19182216 GCTTAGGTATACGGATTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGCA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGA
* * * *
19182281 TCGGCAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTC-GGCCGACT
777 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
19182345 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCCGTCTAA
842 GAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19182406 GCATACCTAGTTCATTCCCAG-CCTAAGATCGGACCAGACCAAAGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCC-AAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGG
* ** * *
19182470 GCTCGGGCATGTGCTGGTGCAACAGTTTTCTTCATCGGGGCA-C--CAT--C-G---C-CGGAGA
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGCAGCATCGCGGAGA
* * * * *
19182525 ACTTGACCGACGGTATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGCTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGG-TGTGCGCACATGATGTG
* * * *
19182590 CGATGGGTGCTAGTAATTGGCCCTTATATTGGCTCCTTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19182655 A-CCCCTTAAAGAACGTTTCAGATTTTACAGGTTTGCTGCAAGTAGCCAATAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19182719 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19182784 TGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** *
19182849 ATTTTAAAAAATCCAGAACCCCAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
19182914 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCAATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19182979 TTGGCATGCAGAAATATGAAGATGTG-CTAAAACCCACCTACCACCCTATCGATTCATGGCCTGC
584 TTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19183043 GCATCCCATCTCTCTAGCCGGCGTAGT----GCCCGTCTG--CG--CGCTCGTTTCGTCAGTTGG
648 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * **
19183100 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAAAGGGTT----------G-T
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * ** * *
19183154 -TGCAGCACGTAGAGGGGGACCCGGTCGATTCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
19183218 AGCGCCCGCACATTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
843 AGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19183278 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** **
19183343 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATTGTC-CGAGCATCGCTGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGC-AGCATCGC-GGAG
* *
19183407 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GAGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19183471 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19183536 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19183601 TGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
19183666 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCC-TTCTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * * * *
19183730 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATTGAAAACAAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19183795 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19183860 ATTGGCACGCAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
19183925 GCATCCCATCTCTCTGGCCGGCGTAGAGCCTGCCCGCCCGCCCAG-CCGCTCGTTTCGTCGGTCA
648 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-GCCCGCTCGTTTCGTCGGTTG
* * *
19183989 GCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCAGCAGCATGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGA
* * * *
19184054 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCTGCCCCTCTGGCCGGCT
777 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19184119 GAGCTCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCTAGTCTAA
842 GAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
19184180 GCATACGGAGTTCATCCCCAGTCCAAGATTGGACCGGACCAAGGGTCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
19184245 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGCAGCATCGTCAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGCAGCATCG-CGGAGA
* * *
19184310 ACCTGACTGGTGGCATTGTGGTTCCGGCGATCGGGGGGGCCGGGAGGGGGAGTGTGCGCACATGA
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC--G-GGGGG-GTGTGCGCACATGA
* *
19184375 TGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
19184440 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19184505 AAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
19184570 TTTGTGCACGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTTCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
**
19184635 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATAATGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
*
19184700 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19184765 GGCATTGGCATGGAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19184830 TGCACAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
645 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** *
19184895 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTTGCAGAAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
** * * * *
19184960 GATCGGTGGCACCCAGAGGGGGACACGGCCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * **
19185025 CTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19185088 GCATAGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGA
1 GCATA-CGGAGTTCATTCCCAGTCCAAG-AT-C-G-G---A---CC-G-----GA-C---C---A
* * * * * * * *
19185153 CTGAGGGTTGCAGCACCGCATGCTGGGTTC-GAGCATGCGCTGGTGTCGCATTTTTTTTCGTCGA
42 ---AGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * *
19185217 GGCACCATCATCGCAGCATCGTCGGAGAACCTGACAGGCAGCGTTGGGGTTCCGGTGATCGGGGG
103 GGCACCATCATCGCAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
* *
19185282 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
167 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
19185347 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
19185412 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
19185477 CTCCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACTAGGATCACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
*
19185542 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAAT
427 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
*
19185607 CGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ***
19185672 GTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19185737 TACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCAGCGTAGTGCTCGCCCGGCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * *
19185802 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGAC
687 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ***
19185867 TGGACTGAGGGTTGCAGCAACAAGATCGGCAACACGCAGAGGGGGACCCGGTTGATCCCCGGCTT
752 CGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *** *
19185932 GTGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTTACGGGTTGACTTAAGCATA
817 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATA
*
19185997 CGGAGTTCATTCCCAGTGTAA
882 CGGAGTTCATTCCCAGTCTAA
* ** * * ** * * * * *
19186018 GCATACAGAGTTCATTCGTAATCTAAGATTAGATCGAATCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19186083 CTCGGGCATGTGCTGGTTCCGCATTTTTCTTCGTCAGGGCACC-TCACCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGCAGCATCG-CGGAGA
* *
19186147 ACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCC-----GG-G-G-G----TGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * *
19186200 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATGAAACCTCGAGAATTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
19186265 ACCCCCATAAAGGGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAGT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19186330 GGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19186395 TGCATGCCAGCAAAAATACAAGGATCACGTTTACCAAGTTTGGAGCCAAAACTCCTTCCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
*
19186460 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
19186525 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGCATCAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
19186590 TTGGCACACAGAAGTATGAAGATGTGCCCAAACACACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19186655 CATCCCGTCTCTCTGGCTGGGGTAGT------------GCCCGCCCGCTCGTTTCATCGGTTGCC
649 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** ** ** * *
19186708 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGATTGAGGGTTGCCGCAGCAGGATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATC
* * * * * *
19186773 GGCAGCACGTAGAGAGGGACCC-ATCTGATCCCCGGCTTGCGCATCCCGCCCCTTCAGGCCAGTT
779 GGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCC-TCTGGCCGGCT
*
19186837 GAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19186898 G-AT-C-G-G---------A--CC--GA----A-CTG----AGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
19186937 CT-AGGGCGTGTGCTAGTGCCGGATTTTTCTTCG-CAGTGGCA-C--CAT--C-G--T--CGGAG
66 CTCA-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGCAGCATCGCGGAG
* * *
19186990 AACCTGACCGACGACATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
19187054 TGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATTAAACCTC-AGGAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCA
* *
19187118 CACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCGA-TAAAGTGTTTGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAA
*
19187182 ATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19187247 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** **
19187312 AAATTTTAAAAAATCCCGAATCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
19187377 TTGCCATGAAACTTCATTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19187442 CATTGGTATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19187507 CGCATCCCATCTCTCTGGTCGGCGTAGTGCCCTCCCGCCCGCCCGCCCGCTTGTTTTGTCGGTTG
647 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** *
19187572 GCTTAGGCATATAGAGCTCATTCCCAGTCTA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTA
19187603 GGCATACGGA
Statistics
Matches: 4567, Mismatches: 519, Indels: 258
0.85 0.10 0.05
Matches are distributed among these distances:
843 8 0.00
844 33 0.01
847 3 0.00
848 1 0.00
849 2 0.00
850 1 0.00
852 2 0.00
853 3 0.00
854 493 0.11
855 1 0.00
858 1 0.00
859 1 0.00
863 2 0.00
865 1 0.00
866 50 0.01
867 1 0.00
871 47 0.01
872 155 0.03
873 2 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 126 0.03
880 62 0.01
881 81 0.02
882 381 0.08
883 103 0.02
885 2 0.00
886 7 0.00
887 6 0.00
888 1 0.00
889 1 0.00
890 188 0.04
891 814 0.18
893 1 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 2 0.00
900 1 0.00
901 5 0.00
902 378 0.08
903 71 0.02
904 1 0.00
907 5 0.00
908 666 0.15
909 24 0.01
910 2 0.00
912 1 0.00
913 2 0.00
916 1 0.00
918 1 0.00
919 3 0.00
920 1 0.00
922 1 0.00
925 3 0.00
926 1 0.00
928 2 0.00
929 19 0.00
930 670 0.15
931 5 0.00
932 2 0.00
934 8 0.00
935 100 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGCAGCATCGCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19185130 original size:26 final size:27
Alignment explanation
Indices: 19185069--19185141 Score: 139
Period size: 27 Copynumber: 2.7 Consensus size: 27
19185059 TAGGCATATA
19185069 GAGTTCATTCCCAGTCTAAGCATAGCG
1 GAGTTCATTCCCAGTCTAAGCATAGCG
19185096 GAGTTCATTCCCAGTCTAAGCATA-CG
1 GAGTTCATTCCCAGTCTAAGCATAGCG
19185122 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
19185142 ATCGAACTAG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 22 0.48
27 24 0.52
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (27 bp):
GAGTTCATTCCCAGTCTAAGCATAGCG
Found at i:19185623 original size:930 final size:922
Alignment explanation
Indices: 19183252--19186898 Score: 4755
Period size: 908 Copynumber: 4.0 Consensus size: 922
19183242 GTTGACTTAG
* * *
19183252 GCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATC-GAACTGA-
** * * ** *
19183317 CGAGGGTTGCGATAGCATATGCTGGGCTC-AGGCATGTGCTGGTGTCACATTTTTCTTCACCGGG
63 CGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGAG
** * *
19183381 GCACCATTGTC-CGAGCATCG-CTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG
127 GCACCATCATCGC-AGCATCGTC-GGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGG
* * *
19183444 GGCCGAGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
190 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
19183509 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
254 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
19183574 ACCAGTAGCCATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACA
319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
19183639 CTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
19183704 TTTGGGGCAAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
449 TTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
* * *
19183768 TCATGAAAAATTGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
513 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
19183833 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATTTGCCTAAACCCAC
578 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * *
19183898 CTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGAGCCTGCCCGCC
643 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCG-C
** * **
19183963 CGCCCAG-CCGCTCGTTTCGTCGGTCAGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAG
706 CGCCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * * * * * * *
19184027 ACCGGACCGATGGTTGCAGCAGCATGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGC
770 ACTGGACTGAGGGTTGCAGCAGAAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGC
* * * * *
19184092 TTGCACATCCTGCCCCTCTGGCCGGCTGAGCTCCCGTACACTCATTTCGTGGGTTGACTTAGGCA
835 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * *
19184157 TACGGAATTCATTCCTAGTCTAA
900 TATGGAGTTCATTCCCAGTCTAA
* * *
19184180 GCATACGGAGTTCATCCCCAGTCCAAG-AT--TG-G---A--CC-G-----GA-C---C--A--A
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCGAACTGACGA
** * * * *
19184222 GGGTCACGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCA
66 GGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCA
* * * *
19184286 CCATCATCGCAGCATCGTCAGAGAACCTGACTGGTGGCATTGTGGTTCCGGCGATCGGGGGGGCC
130 CCATCATCGCAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-C
*
19184351 GGGAGGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCC
193 --G-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCC
*
19184416 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
253 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19184481 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTAC
318 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
19184546 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACATCTACCAA
383 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
19184611 GTTTAGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
448 GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
* *
19184676 TAATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTG
513 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** *
19184741 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAATATGAAGATGTGCCTAAACCCAC
578 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * *
19184806 CTATCACCCTATCGATCCACGGCTTGCACAACCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
643 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCG-C
*
19184871 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
706 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* ** ** ** * * *
19184936 CCGGACCAAGGGTTGTTGCAGAAGGATCGGTGGCACCCAGAGGGGGACACGGCCGATCCCCGGCT
771 CTGGACTGAGGGTTGCAGCAGAAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCT
* * *
19185001 TCCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCAT
836 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
*
19185066 ATAGAGTTCATTCCCAGTCTAA
901 ATGGAGTTCATTCCCAGTCTAA
19185088 GCATAGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGA
1 GCATA-CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATCGAACT-GA
* * * * * *
19185153 CTGAGGGTTGCAGCACCGCATGCTGGGTTCGAGCATGCGCTGGTGTCGCATTTTTTTTCGTCGAG
63 C-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAG
* * *
19185218 GCACCATCATCGCAGCATCGTCGGAGAACCTGACAGGCAGCGTTGGGGTTCCGGTGATCGGGGGG
127 GCACCATCATCGCAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGG
19185283 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTA
192 -CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTA
*
19185348 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT
255 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
19185413 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
19185478 TCCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACTAGGATCACGTCTACCAAGT
385 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
19185543 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATC
450 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
* * *
19185608 GTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTG
515 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
19185673 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
580 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
19185738 ACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCAGCGTAGTGCTCGCCCGGCCA
645 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCC-GCCG
* *
19185803 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACT
708 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT
* * *
19185868 GGACTGAGGGTTGCAGCA-ACAAGATCGGCAACACGCAGAGGGGGACCCGGTTGATCCCCGGCTT
773 GGACTGAGGGTTGCAGCAGA-AGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTT
* * * *** *
19185932 GTGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTTACGGGTTGACTTAAGCATA
837 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* *
19185997 CGGAGTTCATTCCCAGTGTAA
902 TGGAGTTCATTCCCAGTCTAA
* *
19186018 GCATACAGAGTTCATT--C-G--TAATC-TA---AG--------A-T-T-AGATCGAA-T--CGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCGAACTGACGA
* *
19186060 GGGATGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-TCCGCATTTTTCTTCGTC-AGGGC
66 GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGT-CGCATTTTTCTTCGTCGA-GGC
* * * * * *
19186123 ACC-TCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC--GGGG-G
129 ACCATCATCGCAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGCG
** *
19186184 GGCCGG-G-G-G----TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCC
194 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCC
* * * * *
19186242 CTCATGAAACCTCGAGAATTCACACCCCCATAAAGGGAATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
19186307 GTAGCCATTAAAGTGTTTGGAGTGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
19186372 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACGTTTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
19186437 GAGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATG
453 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATG
* * *
19186502 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGCATCA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
19186567 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAGTATGAAGATGTGCCCAAACACACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
19186632 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGGGTAGT----------GCCCGC
648 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCGCCCGC
* * * * *
19186687 CCGCTCGTTTCATCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGATT
713 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACT
* * * * * **
19186752 GAGGGTTGCCGCAGCAGGATTGGCAGCACGTAGAGAGGGACCCATCTGATCCCCGGCTTGCGCAT
778 GAGGGTTGCAGCAGAAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCAT
* * * *
19186817 CCCGCCCCTTCAGGCCAGTTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAG
843 CCCGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAG
19186882 TTCATTCCCAGTCTAA
907 TTCATTCCCAGTCTAA
19186898 G
1 G
19186899 ATCGGACCGA
Statistics
Matches: 2425, Mismatches: 246, Indels: 144
0.86 0.09 0.05
Matches are distributed among these distances:
879 123 0.05
880 62 0.03
890 1 0.00
891 451 0.19
895 1 0.00
896 1 0.00
897 1 0.00
898 5 0.00
900 4 0.00
902 149 0.06
903 64 0.03
904 2 0.00
905 1 0.00
907 7 0.00
908 672 0.28
909 26 0.01
910 3 0.00
911 2 0.00
912 3 0.00
913 1 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 2 0.00
920 3 0.00
921 1 0.00
923 2 0.00
924 5 0.00
925 3 0.00
926 2 0.00
927 3 0.00
928 24 0.01
929 15 0.01
930 666 0.27
931 6 0.00
932 2 0.00
934 7 0.00
935 100 0.04
936 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (922 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCGAACTGACGA
GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCAC
CATCATCGCAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGCGGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAG
GGTTGCAGCAGAAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCA
TTCCCAGTCTAA
Found at i:19186044 original size:26 final size:26
Alignment explanation
Indices: 19185989--19186044 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
19185979 CGGGTTGACT
* * *
19185989 TAAGCATACGGAGTTCATTCCCAGTG
1 TAAGCATACAGAGTTCATTCCCAATC
**
19186015 TAAGCATACAGAGTTCATTCGTAATC
1 TAAGCATACAGAGTTCATTCCCAATC
19186041 TAAG
1 TAAG
19186045 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:19187618 original size:26 final size:26
Alignment explanation
Indices: 19187575--19187625 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19187565 TCGGTTGGCT
*
19187575 TAGGCATATAGAGCTCATTCCCAGTC
1 TAGGCATACAGAGCTCATTCCCAGTC
* *
19187601 TAGGCATACGGAGTTCATTCCCAGT
1 TAGGCATACAGAGCTCATTCCCAGT
19187626 GTAAGATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGGCATACAGAGCTCATTCCCAGTC
Found at i:19188110 original size:26 final size:26
Alignment explanation
Indices: 19188080--19188130 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19188070 TGGGTTGACT
*
19188080 TAGGCATGCGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19188106 TAGGCATACGGAGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATTCCCAGT
19188131 GTAAGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19189004 original size:26 final size:26
Alignment explanation
Indices: 19188968--19189020 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19188958 TTTGAATTGG
*
19188968 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
* *
19188994 GCATACAGAGTTCATTGCCAATCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
19189020 G
1 G
19189021 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:19190746 original size:26 final size:26
Alignment explanation
Indices: 19190716--19190768 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19190706 TTTGAATTGG
19190716 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19190742 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19190768 G
1 G
19190769 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19193973 original size:886 final size:881
Alignment explanation
Indices: 19192343--19198134 Score: 5929
Period size: 884 Copynumber: 6.6 Consensus size: 881
19192333 GGGCTTACGC
* * * *
19192343 ATCC-CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGA
1 ATCCTCGCCCCTCTGGCCGACTGAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* * ** * * *
19192407 AGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCTTAGTCTAAGATTGGACGGGACTGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * * * **
19192472 ATGGTAGCACATGCTTGACTCGGGCTTGTTCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
130 ACGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
* * *
19192537 TCGGTGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGTGTGGCCGAAGGG
195 TCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GG-G-GGCCG-GGGG
19192602 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
256 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
19192667 TAAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
321 TCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
19192732 CCATTAAAGTGTCT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
386 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
19192796 TTTTAGCTGAATGTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
451 TTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
* * *
19192860 AAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
516 AAAAACT-CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
19192925 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
580 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
19192990 ACAAGCCATACAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
645 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
19193055 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGTCCGGGGTAGTGCCCGCCCACCTGCCTGCTC
710 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTC
* * * * *
19193120 ATTTCATCGATTGGCTTAGGCATATGGAGTTCATTCACAGTCTAAGATCAAACTAGACTGAGGGT
775 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACTAGACTGAGGGT
19193185 TGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCG
840 TGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCG
* *
19193227 ATCCTCGCCTCTCTGGCCGACTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGA
1 ATCCTCGCCCCTCTGGCCGACTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* ** ** * *
19193292 GTTCATTCCCAGTCTAAGCATATAGAGTTTTTTCCCAACCTAAGATCGGACCAGATCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
* ** *
19193357 CGAAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
131 CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT
* * * *
19193422 CGGAGCATCACCGGAGAACGTGACCGGCGGCATTGGAGATCCG-CGATTAAGGGGGCCGGGGGGG
196 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-T--GGGGGCCGGGGGGG
* *
19193486 TGTGCGA-ACATGATGTGCGATGGGTGCTGGCACTTGCCCCTTATATTGGCCCCCTATCCCTCAT
258 TGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
19193550 CAAACCTCAAGAATTCACACCACCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
322 CAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
19193615 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
387 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
19193680 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTTACCTAGTTTAGGGC
452 TTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC-TACCAAGTTT-GGGA
19193745 CAAAAAACT-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAATCATGAA
515 C-AAAAACTCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCATGAA
* * * * *
19193809 CAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGT
578 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * ** **
19193874 TTATAGGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAATTCCACCTACCAC
643 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
19193939 CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAGTGTAGTACCTGCCCGCCCGCCCGC
708 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* *
19194004 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGG
773 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACTAGACTGAGG
* * * *
19194069 GTTGTGGTAGCAAGATCGATAGCACGCAG-GGGGGACCCGACCG
838 GTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCG
* * * * * *
19194112 ATCCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGA
1 ATCCTCGCCCCTCTGGCCGACTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
*
19194177 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
* *
19194242 CCGAAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT
131 CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT
*
19194307 CGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG--GGCGGGGGT
196 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGCCGG-GGGGG-
* * *
19194370 TGGGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATC
258 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
19194435 AAACCTCTAGAACTT-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGG
323 AAACCTCGAGAA-TTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
19194499 CATTAAAATGTCTAAAATGGGGACACTTTTCTCAAATGGTCGCAAAATCTTGTACACTTCGAGTT
387 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * ** * *
19194564 TTTATCTGAATATTTTTGTGCATG-CAAAAAAAATACAAGGAACACGCCTATTAAGTTTGGGGCC
452 TTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACA
**
19194628 AAAACTCCATTC-GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAA
517 AAAACT-C-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
19194692 ATAGAAAACGAGCCATCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
580 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
19194757 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
645 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19194822 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCTGCCCGCCC
710 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT----GCCC
* * * * * *
19194887 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAATCTAAGATCGGA-TCGGACCG
771 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACT-AGACTG
* * * ***
19194951 AGGGTTCCGATAGTAGGATCGACAATGCGCAGAGGGGGAACCGACCGATCCCCG
835 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGG-A-C--CCGAT---CG
* * * * *
19195005 ACTTGCACATCCCACCCCTCTAGCCAACTGAGCTTCCGCACGCTCATTTTGTGGGTTGACTTAGG
1 A--T-C-C-T--CGCCCCTCTGGCCGACTGAGC-ACCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * ** *
19195070 CATACGGAGCTCATTCCCAGTTTAAGCATAAAAAGTTCATTCCCAGTCTAAGATCTAACCGAACC
58 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * * *
19195135 GAGGGTTACGGTAGTACATGCTGGGCTCAGACATGTGCTGGTG-CAGCAATTTTCTTTG-CTGGG
123 GAGGGTTACGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGG
** * * *
19195198 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGAT-----CGG
187 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGCCG
19195258 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
252 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
19195323 CTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
317 CTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
19195388 GTAGCCATTATAGTGTCTGAAATGGGCACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTC
382 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
19195453 GAGTTTTTAGCTGAATGTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTG
447 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
19195518 GGACAAAAACTCCTTCT-AGAAAAATTTGAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
512 GGACAAAAACT-CTTCTGA-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * * * ** **
19195582 GAGAAATAG-AAATGAGTCATCTTGCCATGAAACTTCACGTGAA-G---ATGTG-CC--TAAACC
575 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** * * *** * * **** * * * **
19195639 CACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCATCTCTCTG--G-TCGAG-GTAGTGCC
640 AATTTACAAGCC-AT--AAAAATGGCATTG-GCA-CACAGAAATATGAAGAT-GTGCCTA-AACC
** ** * ***
19195699 C-CC--CCA-CC--T--A-CC-C-G-TT---CATTTCGTCGAT-T----GGCTTAG-G--CATAC
698 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * ** * * * * * ** *
19195741 G---G--AGTTCATTCCTAGTC--TAAGATCAGACCAGACTGAGGGC-TGCAGCAG-C-AAGATC
763 GCCTGCCCGCTCGTT--TCGTCGGTTGGCTTAG-GCATACGGAGTTCATTCA-CAGTCTAAGATC
* * * * * * * * * * * *
19195796 -GAC-AGCACACAGAGGG-GGACCCG-ATCA--ATC-CCCGCCCCTCTG-GGCGG--CTGAGCG
824 AGACTAG---ACTGAGGGTTG--CGGTAGCAGGATCGACAG-CACGCAGAGGGGGACCCGATCG
* * * ** * * * * * * ** *
19195850 TTGCACGCTCGTTTCATGGGTTC-ACTTAGGCATACGGA-GTTCATTAC--CAG-T--C-TAAGC
1 ATCCTCGC-C-CCTC-T-GG-CCGACTGA-GCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGC
*
19195907 ATACAGAGTTCATTCCC----------------------------------AT---ACCGGACCG
59 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * **
19195935 AGGGTTGCGGAAGCACATGCTGGGCTCGGGTATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCA
124 AGGGTTACGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
* * * * * *
19196000 CCATCGCCGGAGCATCGCCAGAGAACTTGACCGACGGCATTGGGTTTCCGGCGATCGGGGGGGCC
189 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT---GGGGGCC
* * ** * * *
19196065 GAGGGGGTGGGCACACATGATGTATGATGGGTGCTTGTATTTGGCCCTTATATTGGCCCCTTATC
251 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
19196130 CCTCATCAAACCTCTAGAACTGAC-CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
316 CCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
19196194 AGTAGCCATTAAAATGTCTGAAATGGGGATACTTTTTTCAAATGGTCATAAAATCTTGTACACTT
381 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
19196259 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACATA-GATCACGTCTA-TAAGGT
446 CGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACA-AGGATCACGTCTACCAA-GT
* * * * * *
19196322 TTGGGGCCAAAACTCCGTTC-AAAAAAATTTTTAAAAATCCCGAACCACAAAAAGTTTCAACAAT
509 TTGGGACAAAAACT-C-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * * *
19196386 CGTTAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGT
572 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
19196451 -TAGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
637 AT-GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* *
19196515 CTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
701 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * **
19196580 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGG
766 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACTAG
* * * * * *
19196645 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGATCG
831 ACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCG
* * * * * *
19196696 ATCCCCGGCTTGCACATCCGCCCCTCTGGTCGACTGAGCTTCCGTACACTCGTTTTGTGGGTTGA
1 A---------T-C-C-T-CGCCCCTCTGGCCGACTGAGC-ACCGCACGCTCATTTCGTGGGTTGA
* * *
19196761 CTTAGGCATACGGAGTTTATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
52 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
19196826 CGGACCGAGGGTTAC-GATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
117 CGGACCGAGGGTTACGGA-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * ** * *
19196890 -CCGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCG
181 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT--
* * *
19196954 GGGGGGCC-GGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
244 -GGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * *
19197018 CCCCTATCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTATAGGT
308 CCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19197083 TTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTT
373 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
19197148 GTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
438 GTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * ** *
19197213 CCAAGTTTGGGGCTAAAACGCCTT-TCAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTT
503 CCAAGTTTGGGACAAAAAC-TCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * * * *
19197277 AAAGATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-TAACTTCATGTGAAGGCTTAAGGGAC
566 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
19197341 CATTGAATGGATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA-ATGAAGATATGCCTAAA
631 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* **
19197405 CCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAAC--A-T------
696 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * *
19197461 -----T-----AT-GCTT-GTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCGG
761 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAG
* * * * * * *
19197514 ACCAGA-TCGAGGGTTGCGGTAGTAAGATCGGCAGCAGGTAGAGAGGGACCCGACCGATCCCGGG
826 ACTAGACT-GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA--C--CCGAT--C--G
* * * * * **
19197578 CTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCAAGGGTTGACTTAGGC
1 -AT-C-C-T--CGCCCCTCTGGCCGACTGAGC-ACCGCACGCTCATTTCGTGGGTTGACTTAGGC
** * * ** * * *
19197643 ATACAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCTTAGTCTAAGATTGGACGGGATCG
59 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * *
19197708 AGGGTTATGGCAGCACATGCTTGGCTCGGGCTTGTTCTGGTGCCACATTTTTCTTCGTCGGGGCA
124 AGGGTTACGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
* **** * *
19197773 CCATCGTCGGTGCATCGTTAGAGAACCTGACCGACGGTATTGGGGTTCTGACGATCGGTGTGGCC
189 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GG-G-GGCC
* *
19197838 GGAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
251 GG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19197903 CCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
315 CCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
19197968 CTGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
380 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
19198033 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
445 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
19198098 TGGGACAAAAACTCCTTCTG-AAAAATTTTAAAAAATC
510 TGGGACAAAAACT-CTTCTGAAAAAATTTTAAAAAATC
19198135 TTGCCATGAA
Statistics
Matches: 4084, Mismatches: 596, Indels: 463
0.79 0.12 0.09
Matches are distributed among these distances:
799 54 0.01
800 53 0.01
802 2 0.00
806 2 0.00
807 211 0.05
808 116 0.03
809 1 0.00
811 6 0.00
812 11 0.00
813 11 0.00
814 7 0.00
815 8 0.00
816 3 0.00
817 2 0.00
819 1 0.00
821 1 0.00
822 2 0.00
823 1 0.00
824 1 0.00
825 2 0.00
828 7 0.00
829 1 0.00
833 5 0.00
834 1 0.00
836 22 0.01
837 1 0.00
838 2 0.00
839 7 0.00
840 16 0.00
841 23 0.01
842 18 0.00
843 16 0.00
844 7 0.00
845 2 0.00
846 5 0.00
848 3 0.00
854 13 0.00
855 19 0.00
856 7 0.00
857 25 0.01
858 13 0.00
859 8 0.00
860 1 0.00
861 19 0.00
866 3 0.00
868 1 0.00
869 5 0.00
873 1 0.00
874 100 0.02
875 156 0.04
876 60 0.01
877 20 0.00
878 259 0.06
879 1 0.00
880 9 0.00
881 184 0.05
882 184 0.05
883 115 0.03
884 407 0.10
885 381 0.09
886 285 0.07
887 17 0.00
888 8 0.00
889 11 0.00
890 15 0.00
891 6 0.00
892 1 0.00
893 6 0.00
894 235 0.06
895 164 0.04
896 146 0.04
897 301 0.07
898 61 0.01
900 75 0.02
901 131 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
ATCCTCGCCCCTCTGGCCGACTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT
CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGCCGGGGGGGTGT
GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAA
CTCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACTAGACTGAGGGTTGCGGT
AGCAGGATCGACAGCACGCAGAGGGGGACCCGATCG
Found at i:19194198 original size:26 final size:26
Alignment explanation
Indices: 19194168--19194220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19194158 GTTGACTTAG
*
19194168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19194194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19194220 G
1 G
19194221 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19196795 original size:26 final size:26
Alignment explanation
Indices: 19196766--19196818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19196756 GTTGACTTAG
* *
19196766 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19196792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19196818 G
1 G
19196819 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19198025 original size:878 final size:876
Alignment explanation
Indices: 19195718--19202534 Score: 7106
Period size: 878 Copynumber: 7.8 Consensus size: 876
19195708 ACCCGTTCAT
* * * * *
19195718 TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGCTG
1 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * **
19195783 CAGCAGCAAGATCGACAGCACACAGAGGGGGA--C--CCGAT---C--AAT---C--CCCGCCCC
66 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * *
19195834 TCTGGGCGGCTGAGCG-TTGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTACC
131 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19195898 AGTCTAAGCATACAGAGTTCATTCCCA---T---A----CCGGACCGAGGGTTGCGGAAGCACAT
196 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACCGAGGGTTGCGGCAGCACAT
* * *
19195953 GCTGGGCTCGGGTATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
261 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-
* * * * * *
19196018 CAGAGAACTTGACCGACGGCATTGGGTTTCCGGCGATCGGGGGGGCCGAGGGGGTGGGCACACAT
325 CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACAT
** * * * *
19196083 GATGTATGATGGGTGCTTGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCTAGA
388 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19196148 ACTGAC-CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTC
453 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19196212 TGAAATGGGGATACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
518 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
19196277 TTTTTGTGCATGCCAAAAAAAATACATA-GATCACGTCTA-TAAGGTTTGGGGCCAAAACTCCGT
583 TTTTTGTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTT
* * * *
19196340 TCAAAAAAATTTTTAAAAATCCCGAACCACAAAAAG-TTTCAACAATCGTTAAAAATAGAAAACG
646 TCAAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTTGAA-AATCGTGAAAAATAGAAAACG
* *
19196404 AGCCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGT-TAGAATTTACAAGCCAT
709 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCAT
19196468 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
773 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
19196533 ACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGT
838 ACGGCTTGCGCATCCCGTCTCTCTGGCC-A-GCA-T---------------TA-TCGC
* *
19196591 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTG
1 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
19196656 CGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGATCGATCCCCGGCTTGCACAT-CCGCCCC
66 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * ** * * ** *
19196720 TCTGGTCGACTGAGCTTCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATTCCC
131 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * **
19196785 AGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCACA
196 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACCGAGGGTTGCGGCAGCACA
* * *
19196850 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CCGGGCACTATCGTCGGAGCATCG
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * *
19196914 TCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAA
325 -CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACAT
* * *
19196979 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGA
388 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
19197044 ACTCACACCCCCTTAAAGAGCATCTGAGATTTTATAGGTTTGCTACTAGTAGCCATTAAAGTGTC
453 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19197109 TGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATT
518 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
19197174 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACGCCTTTC
583 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
19197239 AAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTT-AAAGATCGTGAAAAATAGAAAACGAG
648 AAAAAAATTTTAAAAAATC-CGAACCATAAAAAGTTTTGAAA-ATCGTGAAAAATAGAAAACGAG
* * * *
19197303 TCGTCTTGCCAT-TAACTTCATGTGAAGGCTTAAGGGACCATTGAATGGATTTACAAGCCATAAA
711 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19197367 AATGGCATTGGCACATAGAAA-ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACG
776 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
19197431 GCTTGTGCATCCCGTCTCTCTGGCCAACATTAT-GC
841 GCTTGCGCATCCCGTCTCTCTGGCCAGCATTATCGC
* *
19197466 TT-GTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTG
1 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * * *
19197530 CGGTAGTAAGATCGGCAGCAGGTAGAGAGGGACCCGACCGATCCCGGGCTTGCACATCCCGCCCC
66 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * **
19197595 TCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCAAGGGTTGACTTAGGCATACAAAGTTCATTCCC
131 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * **
19197660 AGTCTAAGCACACGGAGTTCATTCTTAGTCTAAGATTGGACGGGATCGAGGGTTATGGCAGCACA
196 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-GGACCGAGGGTTGCGGCAGCACA
* * * * *
19197725 TGCTTGGCTCGGGCTTGTTCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCG
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
19197790 TTAGAGAACCTGACCGACGGTATTGGGGTTCTGACGATCGGTGTGGCCGGAGGGGGTGTGCGCAC
325 -CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-G-GGGGGTGTGCGCAC
* *
19197855 ATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGA
386 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
19197920 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTG
451 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
19197985 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
516 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
19198050 TGTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCC-T
581 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * * *** * *
19198114 TCTGAAAAATTTTAAAAAATCTTG--CCAT-GAAA--CTT---AA-CGTGAAGGCT---TAA-GG
646 TCAAAAAAATTTTAAAAAATC-CGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* * * * * * * ** * *
19198166 GAC--CATTG-TATG-AA-TTTAC---AAGCCATAA---A--AATG---GCATTGGCATG-CAGA
710 GTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * ** ** ** *** * * * ** * * *
19198214 AATATGAAG-ATGTGCCTAAACCCACCTACCACCCTAT---T-GATCCACGGCTTGC-GCGTCTC
774 AAAATG--GCAT-TGGC-ACACAGAAATATGAAGATGTGCCTAAACCCAC--CTACCACCCTATC
*** ** * * * * * * * **** *
19198273 G-TCTTTTTGGCCGGCGTAGTGCTCG-CCCGCCCGCCCTGCCCGCTCGT
833 GATC--CACGGCTTGCGCA-T-CCCGTCTC-TCTGGCCAGCATTATCGC
* * * *
19198320 TTCATCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
1 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * * * *
19198385 CGACAGCAGGGTTGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCC
66 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
19198450 TCTAGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
131 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19198515 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG-TTCTGACCGGACCGAAGGTTGCGGCAGCAC
196 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GGA-CGGACCGAGGGTTGCGGCAGCAC
*
19198579 ATGCT----T----CA----------CCG-A--------------GGCACCATCGCCGGAGCATC
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * *
19198611 ACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTATGCGCAC
324 -GCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCAC
*
19198676 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
386 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19198741 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGACATTAAAGTG
451 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
19198806 TGTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTTTAGCTGAA
516 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
19198871 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
581 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
19198936 CCGAAAAAATTTGAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG-AAA--A
646 TCAAAAAAATTTTAAAAAATC-CGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* *
19198998 -----C-T----T----C-T--CGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCAAAA
710 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
19199046 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
775 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
19199111 GGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCCGCCCGCCC
840 GGCTTGCGCATCCCGTCTCTCTGGCCAGCATTA-T----------CG--C
* * * *
19199160 TCTCGTTTCATCGGTTGGCCTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAA
1 T-TCG-----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * * *
19199225 GGGTTGCGGCAGAAGGATCGACAG--CGCGGAGGGGGACCCGGCCGATCCCCGACTTACGCATCC
60 GGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * *
19199288 CGCCCCTCTGGTCGGCTGAGCACCTGCAAGCTCGTTT-AGTGGGTTGACTTAGGCATACGGAGTT
125 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTT
* *
19199352 CATTCCCACTCTAAG-AT-C-G-G---A----C---C-------GG-C---CCGAGGGTTACGGC
189 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACCGAGGGTTGCGGC
* * * * *
19199392 AGCACGTGCTGGGCCCAGGCATGTG-TTGTGCCGCATTTTTCTTC-TCCGGGGTACCATCGTCGG
254 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGG
* * *
19199455 AGCATCGCCAGAGAACCTGAGCGGCAGCATTAGGGTTCC-AGCGATCGGAGGGG-CGGGGGGTGT
318 AGCATCG-CAGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGG-GGGGCCGGGGGGTGT
* *
19199518 GCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAA
380 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
19199583 CCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAACCATT
445 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
19199648 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
510 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
19199713 GCTAAATGTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAA
575 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
19199778 CTCCTTTCAAAAAAATTTAAAAAAATCCTAAACTACAAAAAGTTTTCAAAATCATGAAAAATAGA
640 CTCCTTTCAAAAAAATTTTAAAAAATCC-GAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGA
19199843 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
704 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
19199908 CCATAAAAATGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCG
769 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
19199973 ATCCACGGCTTACGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCTGCCCGCTCGT
834 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGC--A-T-------T-----ATCGC
* * * * *
19200031 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTC-GATGTAAGATTGGACCAGACTGAGGGTT
1 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTT
* * * * * *
19200095 ACGGTAGTAGGATCGGTAGCA--CAGAGGGGGACCCGATCGATCCCTGACTTGCGCATCCCGCCC
65 GCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * **
19200158 CTCTGGCCGGCTAAGCGCCCGCCCGCTTGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCC
130 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
**
19200223 CAGTCTAAGCATACGGAGTTCATTCCCAGTC-AAG-TTCCAATCGGACCGAGGGTTGCGGCAGCA
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GGA-CGGACCGAGGGTTGCGGCAGCA
* * * * *
19200286 CATGTTGGGCTCGGGCATGTGCTGGTACCGCATTTTTTTTCGTC---G-A--AGCATC---GC--
258 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * *
19200340 CG--GAGAACCTGACCGGCAGTATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACA
323 CGCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACA
*
19200403 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
387 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
19200468 AACTCACACCCCCTTAAAAAACATTTGAGATTTTATAGGTTTCCTGCCAATAGCCATTAAAGTGT
452 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
19200533 GTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
517 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
19200598 TTTTTTGTGCAT-CCAAAAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTCCTTC
582 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * ** *
19200662 CAAAAAAAGTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
647 CAAAAAAATTTTAAAAAAT-CCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* * *
19200727 TCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTTCAAGCCATAAA
711 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19200792 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATG
776 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
19200857 GCTTGCGCATCCCGTCTCTCT-GACAGGC-GTAGTGCCCGCCCGCTC
841 GCTTGCGCATCCCGTCTCTCTGGCCA-GCATTA-T-------CG--C
* * * ** * * *
19200902 GTTTCGTCAGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCAAAGGT
1 --TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * * *
19200967 TGCAGCAGCAAGATTGGCAGCACACGGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCC
64 TGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * ** *
19201032 CCTCTGGCTGGCTGAGCGCCCGCACGTTCATTTTGTGGGTCGACTTAGGCATACGGAGTTCATTC
129 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
19201097 CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCA
194 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACCGAGGGTTGCGGCAGCA
* ** *
19201162 CATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCGAGGCACCATCGTC-GAGCAT
258 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * ** *
19201226 CGTC-GAGAACCTGACCGGCGGTATTGGGGTTTCGGTGATCGGGAGGGCCGGGGGGGGGTGCGCA
323 CG-CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGCA
* * *
19201290 CATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGCCCCCCTATCCCTCATCAAACCTCA
385 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
19201355 AGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCGAGTAGCCATTAAAGT
450 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
19201420 GTTTGAAATGGGGACACTTTTTTCAAATAGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
515 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
19201485 ATTTTTTT-TGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGGTTGGGGCCAAAACTCCT
580 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
19201549 TT-GAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAACGA
645 TTCAAAAAAATTTTAAAAAATCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
*
19201612 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTTCAAGCCATAA
710 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
19201676 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
775 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * **
19201741 GGCTTGAACATCCCATCTCTCTGG-CAGGCGTAGTGCTCGCCCGCTC
840 GGCTTGCGCATCCCGTCTCTCTGGCCA-GC--A-T--T--ATCG--C
* * *
19201787 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGGACCGAAGG
1 --TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGG
* ** * * *
19201851 TTGCAGCAGTAGGATTAGCAGCACGCAGAGGGGAACCCGACCGATCCCTGGCTTGTGCATCCCGC
63 TTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* *
19201916 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGTATACGGAGTTCATT
128 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
19201981 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGACTGGGCCGAGGGTTGTGGCAGC
193 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-GGACCGAGGGTTGCGGCAGC
* * * * **
19202046 ACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGCCAGGGCACCATCACCGGAGCA
257 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * * * * * * *
19202111 TCGTCGGAGAACGTGATCGGTGGCGTTGGGTTTTCGACGATCGGGGGGTCGGGAGGGGGTGTGCA
322 TCG-CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-C-CG-GGGGGTGTGCG
* *
19202176 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTT
383 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
19202241 CGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
448 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
19202306 GTGTTTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
513 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * ***
19202371 GAATTTTTTTTTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGTTACCAAAACTC
578 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** * **
19202436 CTTTTGAAAAATTTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
643 CTTTCAAAAAAATTTTAAAAAATCC-GAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
19202501 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
707 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
19202535 CTAATGCGTC
Statistics
Matches: 5016, Mismatches: 656, Indels: 525
0.81 0.11 0.08
Matches are distributed among these distances:
818 21 0.00
819 1 0.00
821 260 0.05
822 85 0.02
823 2 0.00
824 4 0.00
825 4 0.00
826 2 0.00
827 6 0.00
828 18 0.00
829 8 0.00
830 22 0.00
831 20 0.00
832 7 0.00
833 3 0.00
835 3 0.00
836 2 0.00
837 3 0.00
838 2 0.00
840 2 0.00
841 3 0.00
843 2 0.00
844 100 0.02
846 67 0.01
847 2 0.00
848 307 0.06
849 21 0.00
850 69 0.01
851 15 0.00
852 6 0.00
853 17 0.00
854 5 0.00
855 223 0.04
856 2 0.00
857 1 0.00
858 7 0.00
861 4 0.00
862 6 0.00
863 3 0.00
864 4 0.00
865 165 0.03
866 4 0.00
867 1 0.00
868 138 0.03
869 4 0.00
870 4 0.00
871 1 0.00
872 3 0.00
873 150 0.03
874 112 0.02
875 284 0.06
876 127 0.03
877 309 0.06
878 464 0.09
879 3 0.00
880 4 0.00
882 7 0.00
883 1 0.00
884 4 0.00
885 405 0.08
886 84 0.02
887 128 0.03
888 259 0.05
889 298 0.06
890 54 0.01
891 44 0.01
892 47 0.01
893 2 0.00
894 1 0.00
895 65 0.01
896 143 0.03
897 299 0.06
898 63 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
AGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAA
AAAATTTTAAAAAATCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCAGCATTATCGC
Found at i:19198525 original size:26 final size:26
Alignment explanation
Indices: 19198496--19198548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19198486 GTTGACTTAG
19198496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19198522 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19198548 G
1 G
19198549 TTCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19201116 original size:26 final size:26
Alignment explanation
Indices: 19201080--19201132 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19201070 GTCGACTTAG
*
19201080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19201106 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19201132 G
1 G
19201133 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19201538 original size:889 final size:887
Alignment explanation
Indices: 19199340--19202534 Score: 4438
Period size: 885 Copynumber: 3.6 Consensus size: 887
19199330 GTTGACTTAG
* * * * *
19199340 GCATACGGAGTTCATTCCCACTCTAAGATCGGACCGGCCCGAGGGTTACGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19199405 CCCAGGCATGTGTTGTGCCGCATTTTTCTTCTCCGGGGTACCATCGTCGGAGCATCGCCAGAGAA
66 CTCGGGCATGTGCTGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCAGAGAA
* * * * *
19199470 CCTGAGCGGCAGCATTAGGGTTCC-AGCGATC-GGAGGGGCGGGGGGTGTGCGCATATGATGTGC
131 CCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGAGGGTCGGGGGGGGTGCGCACATGATGTGC
* *
19199533 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTGGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19199598 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAACCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
* *
19199663 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTT
* *
19199728 GCACGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* * *
19199793 TTTAAAAAAATCCTAAAC-TACAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCT
454 TTTTAAAAAATCCGAACCGT--AAAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19199856 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGC
* * *
19199921 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTAC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
*
19199986 GCATCCCGTCTCTCTAGCCA-GCGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
646 GCATCCCGTCTCTCT-GACAGGCGTAGTG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * * * * * *
19200050 ATACAGAGTTCATT-CTCGATGTAAGATTGGACCAGACTGAGGGTTACGGTAGTAGGATCGGTAG
706 ATACGGAGTTCATTCCTAG-TCTAAGATTAGACCGGACCGAAGGTTGCAGCAGTAGGATTGGCAG
* * *
19200114 CACA-GAGGGGGACCCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCC
770 CACACGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * **
19200178 GCCCGCTT-GTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAA
835 GCACG-TTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19200231 GCATACGGAGTTCATTCCCAGTC-AAGTTCCAATCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19200295 CTCGGGCATGTGCTGGTACCGCATTTTT-TT-------------TCGTCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCT-GTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCAGAGA
* * * *
19200346 ACCTGACCGGCAGTATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTAC
130 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGAGGGTCGGGGGGGGTGCGCACATGATGTGC
19200411 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * * *
19200476 CCCCCTTAAAAAACATTTGAGATTTTATAGGTTTCCTGCCAATAGCCATTAAAGTGTGTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
*
19200541 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
* * * *
19200606 GCAT-CCAAAAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* *
19200670 GTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAAT-CCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19200735 CCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTTCAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCAT
* *
19200800 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* *
19200865 ATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAAGCATACGGA
648 ATCCCGTCTCTCTGACAGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
19200930 GTTCATTCCTAGTCTAAGATTAGACCGGACCAAAGGTTGCAGCAGCAAGATTGGCAGCACACGGA
713 GTTCATTCCTAGTCTAAGATTAGACCGGACCGAAGGTTGCAGCAGTAGGATTGGCAGCACAC-GA
* * *
19200995 GGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTT
777 GGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTT
* *
19201060 CATTTTGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19201106 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19201171 CTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCGAGGCACCATCGTC-GAGCATCGTC-GAGA
66 CTCGGGCATGTGCTG-TGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCAGAGA
* * * ** *
19201234 ACCTGACCGGCGGTATTGGGGTTTCGGTGATCGGGAGGGCCGGGGGGGGGTGCGCACATGATGTG
130 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGAGGGTC-GGGGGGGGTGCGCACATGATGTG
* * *
19201299 CGATGGGTGCTGGTACTTGGCCCCTATATTGCCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19201364 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCGAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
* *
19201429 GGGGACACTTTTTTCAAATAGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * * *
19201494 GCATGCCAACAAAAATACAAGGATTATGTCTACCAAGGTTGGGGCCAAAACTCCTTT-GAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* *
19201558 TTTTAAAAAATCCGAACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGC
454 TTTTAAAAAATCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
19201622 CATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATT
* **
19201686 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGAACA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * * *
19201751 TCCCATCTCTCTGGCAGGCGTAGTGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
649 TCCCGTCTCTCTGACAGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
19201816 TTCATTCCTAGTCTAAGATCAGACAGGACCGAAGGTTGCAGCAGTAGGATTAGCAGCACGCAGAG
714 TTCATTCCTAGTCTAAGATTAGACCGGACCGAAGGTTGCAGCAGTAGGATTGGCAGCACAC-GAG
* * *
19201881 GGGAACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
778 GGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTC
* *
19201946 ATTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
843 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19201991 GCATACGGAGTTCATTCCCAGTCTAAGGTCGGA-CTGGGCCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
19202055 GCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGCC-AGGGCACCATCACCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCT-GTGCCGCATTTTTCTTCGCCGA-GGCACCATCGTCGGAGCATCGTCAGA
* * ** * * * *
19202119 GAACGTGATCGGTGGCGTTGGGTTTTCGACGATCGGG-GGGTCGGGAGGGGGTGTGCACACATGA
128 GAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGAGGGTC-GG-GGGGG-GTGCGCACATGA
* * *
19202183 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACTTCGAGAAG
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
19202248 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
*
19202313 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * *** **
19202378 TTTTTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGTTACCAAAACTCCTTTTGA
384 TTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAA
* * * *
19202443 AAAATTTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
19202508 TCTTGCCATGAAACTTCACGTGAAGGC
513 TCTTGCCATGAAACTTCACGTGAAGGC
19202535 CTAATGCGTC
Statistics
Matches: 2064, Mismatches: 199, Indels: 81
0.88 0.08 0.03
Matches are distributed among these distances:
873 76 0.04
874 7 0.00
875 122 0.06
876 67 0.03
877 298 0.14
878 212 0.10
879 1 0.00
884 2 0.00
885 414 0.20
886 66 0.03
887 62 0.03
888 249 0.12
889 313 0.15
890 70 0.03
891 60 0.03
892 45 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCAGAGAA
CCTGACCGGCAGCATTGGGGTTCCGACGATCGGGAGGGTCGGGGGGGGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATT
TTAAAAAATCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
CCGTCTCTCTGACAGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCTAGTCTAAGATTAGACCGGACCGAAGGTTGCAGCAGTAGGATTGGCAGCACACGAGGGG
GACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCATT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19201997 original size:26 final size:26
Alignment explanation
Indices: 19201967--19202017 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19201957 TGACTTAGGT
19201967 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19201993 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19202018 GTCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19205119 original size:26 final size:26
Alignment explanation
Indices: 19205083--19205135 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19205073 GTTGACTTAG
*
19205083 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19205109 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19205135 G
1 G
19205136 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19206268 original size:903 final size:901
Alignment explanation
Indices: 19202544--19206759 Score: 5928
Period size: 905 Copynumber: 4.7 Consensus size: 901
19202534 CCTAATGCGT
** *
19202544 CATTGGGGTTCCGGTGAT--GGGGGGCC-GGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19202606 ACTTGGCCCTTATATTGGCCCCCTATCCCTTATTAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
19202671 CATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTT
* *
19202736 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAAGTTTTTTGTGCATG-CAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAA
19202800 AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTT-CGAAAAAATTTTAAAAAATCC
* * * * *
19202865 CGAACAGGAAGAAGTTTT-GAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATCAAACTTC
325 CGAACAGCAA-AAATTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
* *
19202929 ACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
19202994 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * * *
19203058 TGGCCGGTATAGTGCCCACCCGCCCGCCAGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
519 TGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
19203123 GTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGGTGCGGCAGCAGGATCGGTAGCATGCAGA
584 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGA
* * * **
19203188 G-GAGGACCCGGCTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCATCCGCACGC
649 GAG-GGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
19203252 TCGTTTCATGGGTTGACATAGGCATATGGAGTTCATT-CCAGTCCAAGCATACGGAGTTCATTCC
713 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** * *
19203316 GAGTCTAAGATCAGACCAGACTTAGGGTTGGGATAGCACATGCTGGGCTCAAGCATGTGCTGGTG
778 CAGTCTAAGATCAGACCGGAC-AAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG
* ** * * * * *
19203381 CCGCATTTTTCGTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGA
842 CCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGG
19203441 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGGTGTGCGCACATGATGTGC-ATTGGGTGCT
1 CATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGA-TGGGTGCT
* *
19203505 GGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
63 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19203570 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTT
128 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTT
** * * * *
19203635 TTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGGTGAATTTTTTTATGCATACCAAT
193 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAAC
* *
19203700 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTATCGAAAAAATTTTAAAAAA
258 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCT-TCGAAAAAATTTTAAAAAA
* * *
19203765 TCTCGAACTGCAAAAAGTTTT-GAAAATGGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
322 TCCCGAACAGCAAAAA-TTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
*
19203829 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
386 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
19203894 GAAATATGAAGATGTGCATAAACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG-CA
451 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-
* * * *** * *
19203958 TCTCTGGCTGGCGTAGTGCTCGCCCGCCCGGTTGCCCGCTCATTTCATCGGTTGGCTTAGGCATA
515 TCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
19204023 CGGAGCTCATTCCCCGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGGTAACACG
580 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACG
* * * * *
19204088 CAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCTCCTTCTGGCCGGTTGAGCGCCTGC
645 CAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGC-CCCTCTGGCCGGCTGAGCGCCCGC
*
19204153 ACGCTCATTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
709 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
19204218 TTCCCAGTCGAAGATCAGACCGGACCGAGAGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
774 TTCCCAGTCTAAGATCAGACCGGA-CAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCT
* * * * * *
19204283 GGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGTGTATCATCGGAGAACCTGACCGGCAG
838 GGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGG
* * *
19204347 CATTGGGGTTCCTG-TGATCGTGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
1 CATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
19204411 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
19204476 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTT
*
19204541 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAA
* *
19204606 AAATACAAGGATCACGT-T--TAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-C
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTT-CGAAAAAATTTTAAAAAATC
* * * *
19204667 CTCGAACCGAAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
324 C-CGAACAGCAAAAATTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
*
19204732 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
19204797 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTTTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
19204862 CTGGCCGACGTAGTGCCCGCCCGCTTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
518 CTGGCCGGCGTAGTGCCCGCCCG--T-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * *
19204927 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATC-AGCAGCA
579 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-TAGCA
* * *
19204991 TGCAGAG-GGCGAACCCGGCCGATCCCCGGCTTACGTATCCCGCCCCTCTGGCCGGCTGAGCGCC
643 CGCAGAGAGG-G-ACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19205055 CGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGT
706 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
19205120 TCATTCCCAGTCTAAGATCGGACCGGACAGAGGTTTACGATAGCACATGCTGGGCTCAGGCATGT
771 TCATTCCCAGTCTAAGATCAGACCGGACA-AGGGTTACGACAGCACATGCTGGGCTCAGGCATGT
* * * *
19205185 GCTGGTGCTGCATTTTTCTTCACCAAGGCACCATCGCGGGAGCATCGTCGGAGAACCTGACCGGC
835 GCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGC
19205250 GG
900 GG
* * *
19205252 CATTGAGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19205317 ACTTGGCCCTTATATTGGGCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
19205382 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTT
* *
19205447 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAA
** *
19205512 AATATGAGGATCACGTCTACCAAGTTTGGGGCAAAAATTCCTTCTGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTC-GAAAAAATTTTAAAAAATCC
* * * *
19205577 CGAACAACAAAAATTTTCAAAAATCGTCAAAAATAGAAAATGCGTCGTCTTGCCATGAAACTTCA
325 CGAACAGCAAAAATTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
**
19205642 CGTGAAGGCTTAAGGGACCATTGCGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
19205707 TATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
19205772 GGGCGACGTAGTGCCCGCCCGTCCACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
520 GGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * *
19205837 TTCATTCCCAGTCTAAGGTCAGACCGGACTGAGGGTTAG-GTTAGCAGTATCGATAGCACGTAGA
585 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-GCGGCAGCAGGATCGATAGCACGCAGA
* * ** * * **
19205901 GAGGGACCCAACCGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCTTGCACGCT
649 GAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * ** * *
19205966 CATTTCGTGGGTTGACTTAGGCATACAGAGTTGTTTCCCAGTGTAAGCATCCGGAGTTCATTCCC
714 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * *
19206031 AGTCTAAGATCGGACTGGATCAAGGGTTACGGCAGCACATGTTGGGCTTAGGCATGTGCTGCTAC
779 AGTCTAAGATCAGACCGGA-CAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * *
19206096 CACATTTTTCTTCGTCC-GGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACCGGCGG
843 CGCATTTTTCTTC-ACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGG
* * *
19206154 CGTTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGGTGGGTGCTGG
1 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGG
* **
19206219 CACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
19206284 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT-AAA-GTAATGAAATGTGGACACTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGT-CTGAAATGGGGACACTTTT
* *
19206347 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACA
194 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACA
* ** *
19206412 AATATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAATATTTTTAAGAAA
259 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCGAAAAA-A-TTTTAA-AAA
* * * *
19206477 A-CCCGAACCGC-AAAAGTTTC-ACAAATCATGAAAAATAGAAAATTAGTCGTCTTGCCATGAAA
321 ATCCCGAACAGCAAAAATTTTCGA-AAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
* *
19206539 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCAAAAAAATGGCATTGGCATGC
385 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * **
19206604 AGAAATATGAAGATGTGCCTACACCCACCTTCCACCCTATCGATCCATGGCTTATGCATCCCGTC
450 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
19206669 TCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCTGCCCGCCTGTTCGTTTCGTCGGTTGGCTTAGG
515 TCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
19206734 CATACGGAGTTCATTCCCAGTCTAAG
576 CATACGGAGTTCATTCCCAGTCTAAG
19206760 CATATCGAGT
Statistics
Matches: 2979, Mismatches: 290, Indels: 91
0.89 0.09 0.03
Matches are distributed among these distances:
897 16 0.01
899 8 0.00
900 5 0.00
901 247 0.08
902 566 0.19
903 557 0.19
904 479 0.16
905 609 0.20
906 249 0.08
907 3 0.00
908 238 0.08
909 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCGAAAAAATTTTAAAAAATCCC
GAACAGCAAAAATTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGA
GGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGC
ATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGG
Found at i:19210180 original size:26 final size:26
Alignment explanation
Indices: 19210150--19210200 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19210140 GTTGACTTAG
19210150 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19210176 GCATATGGAGTTCATTCCCAGTCTA
1 GCATATGGAGTTCATTCCCAGTCTA
19210201 TGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19211069 original size:26 final size:26
Alignment explanation
Indices: 19211040--19211095 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19211030 TGGGTTGACT
*
19211040 TAAGCATACAGAGTTTATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
* *
19211066 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
19211092 TAAG
1 TAAG
19211096 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:19211444 original size:892 final size:890
Alignment explanation
Indices: 19208526--19212725 Score: 5371
Period size: 881 Copynumber: 4.7 Consensus size: 890
19208516 TCGTGGGTTG
* * * *
19208526 ACCTGACTGGCAGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGCTGTGCGCACATGATGTG
1 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19208591 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19208656 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19208721 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
196 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
19208786 TGCATGCCAAAAAAAATATGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
261 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
* *** * *
19208851 ATTTTAAAAAATTTCTAACAACAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTT
325 ATTTTAAAAAA-TCCTAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
19208916 GCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
389 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19208981 TTGGCATGCAGAAATATGAAGATGTGCCTCAATCCACCTACAACCCTATCGATCCACGGCTTGCG
454 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19209046 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCACCCGT-CCGCTCGTTTCGTCGGTTGGCTTA
519 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCCGCTCGTTTCCTCGGTTGGCTTA
* * * * * ** * * * *
19209110 GGTATACGGAGTTCATTCCCAGTCCAAGGTCAGACCAGACCGAGAGTTATGGTAGCAGTATCAGT
584 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
19209175 AGCACGTAGAGGGGGACCTGATCGATCCTCGACTTGTGCAT-CCGCCCTTCTGGCCGACTGAGCG
649 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
19209239 CTCGCACGCTC----C-T---TT--C---AG------GAGTTCATTCCCAGTGTAAGCGTATGGA
714 CCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
19209285 GTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGATTGCGGTAGCAAATGCTGGGCTCGGGCAT
779 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
19209350 GTGCTGCTACCGCATTTTTCTTCGTCGGGGCACCATCCCAGAGCATCGTCGGAGA
844 GTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA--CC--A-CATCGTCAGAGA
** * *
19209405 ACCTGACCGGTGGCATTGGGGTTCCGGCCATCGGGGGGGCCGGGGGGGGGTGTACGCACATGATG
1 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGATG
* * * *
19209470 TGCGGTGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
19209535 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19209600 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTC
194 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19209665 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACTTTCCAAAA
259 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAA
* * * * * *
19209730 AAATTCTAAAAAATCTTGAGCC-TCAAAAAGTTTTGAAAATTGTGAAAAAAAGAAAACGAGTCGT
323 AAATTTTAAAAAATCCT-AACCGT-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
19209794 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
386 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19209859 GCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
451 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * *
19209924 TTGCATCCCCTGTCTCTGGCCGGCGTAATGCCCGCTCGCCCG-CCCGCTCGTTTCAC-C-GTTGG
516 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCCGCTCGTTTC-CTCGGTTGG
* * * * *
19209986 CTTAGGCATACGGAGTTAATTCCCAGTCTAAGATC-GAACTGGATCGAGGGCTGCGGCAGCAAGA
580 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
19210050 TCGACAGCACATAGAGTGGGACCCGATCGATCCCTGGCTTCCGCATCCCACCCCTCTGGCCGGCT
644 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
19210115 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAT
709 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
19210180 ATGGAGTTCATTCCCAGTCTATGATCAGACCGGATCGAGGGTTACGGTAGCACATGATGGGCTCG
774 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
19210245 GGCATGTGCTGGTGCCGCATTTTTGTTCG-CTGGGGCACCATCGCCAGAGCATCGCCGGAGA
839 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG---CA---CC--A-CATCGTCAGAGA
* * * * *
19210306 ACCTGACTGACGGCATTGGGGTTCCGGCGAT---------C-GGGGGGTGTGCGTACGTGATGTG
1 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19210361 CGTTGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19210426 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19210491 GGGGACACTTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
196 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19210555 GTGCTTGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGGGCACAAAACTCCTTCCGAAAA
260 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGC-CAAAACTCCTTCCGAAAA
*
19210620 AATTTTAAAAAATCCATAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
324 AATTTTAAAAAATCC-TAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
19210685 TGCCATGAGACTTCAC-TGAAGGTTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
388 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19210749 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGC
453 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19210814 GCAACCCATCTTTCTGGTCGACGTAGTGTCCGCCCGCCCGTCCACCCGCTCGTTTCCTCGGTTGG
518 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT---CCCGCTCGTTTCCTCGGTTGG
* * * ** *
19210879 CTTAGGCTTACTGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAGTAGGAT
580 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
** * *
19210944 CGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTG
645 CGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
19211009 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTTATTCCCAGTCTAAGCGTA
710 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * *
19211074 CGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
775 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
*
19211139 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA-C-CATCGTCAGAGA
840 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACATCGTCAGAGA
*
19211188 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
1 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19211253 CAATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
66 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19211318 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
131 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19211383 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
196 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19211448 TGAATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAA
261 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAA
* * * **
19211513 ATTTTAAAAAATCCCGAATCGTAAAATGTTTCGAAAATCACGAAAAATAGAAAACGAGTCGTCTT
325 ATTTTAAAAAAT-CCTAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
19211578 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAATATGGTA
389 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19211643 TTGGC-TCGCAGAAATATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGATCCAAGGCTTGC
454 TTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19211707 GCAACCCGTCTCTCTGGTCGGCGTAGTGCCCGCCAGCTCGCCCGCCCGCCCGCTCGTTTCGTCGG
518 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--C-CGCCCG---TCCCGCTCGTTTCCTCGG
* * * ** * *
19211772 TTGGCTTAGGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGAACAAAGGGTTGTGGC-CCA
576 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * * * *
19211836 GGATTGCCAGCATGTAGAGGGGCACCCGGTCGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
641 GGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
19211901 GCTGAGCGACCGCACGCTCATTTCGTGGGTGGACTTAGGCATACAGAGTTCAATCCCAGTCTAAG
706 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG
*
19211966 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
771 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
19212031 TCTGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCTGGAGA
836 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-CATC---G--T--C-AGAGA
* * ** *
19212095 ACTTGACCTGCAGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCTCACATGATGTG
1 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19212159 CGAAGAGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
66 CGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19212223 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
130 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19212288 TGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
195 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** ** * * * * **
19212353 TGTGCACACCAACAAAAATACAAGGATCACAACTACAAAGTTTAGGGCCAGATCAT-TTTTTGAA
259 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC-TCCTTCCGAA
* * *
19212417 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGACGT
322 AAAATTTTAAAAAATC-CTAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19212482 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTAGAAGCCATAAAAATG
386 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19212547 GCATTGGCATGCGGAAATATGAGGATGTGCCTTAACCCACCTACCACCCTATCAATCCATGGCTT
451 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19212612 GCGTATCCCGTCTCTCTGGCCGCCGTAGT--------GCCCG-CCCGCTCGTTTCATCGGTTGGC
516 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCCGCTCGTTTCCTCGGTTGGC
* * * *
19212668 TTAGGCATAGGGAGTTCATTCCCAATCTAAGA-CTGGACCGGACCGAGGGTTGCCGCAG
581 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAG
19212726 AACATCCTGG
Statistics
Matches: 2904, Mismatches: 334, Indels: 153
0.86 0.10 0.05
Matches are distributed among these distances:
879 36 0.01
880 93 0.03
881 506 0.17
882 38 0.01
885 1 0.00
886 2 0.00
888 137 0.05
889 323 0.11
890 12 0.00
891 75 0.03
892 336 0.12
893 386 0.13
894 4 0.00
895 5 0.00
896 214 0.07
897 73 0.03
899 5 0.00
900 113 0.04
901 44 0.02
902 1 0.00
904 1 0.00
905 2 0.00
906 169 0.06
907 323 0.11
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCCGCTCGTTTCCTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACATCGTCAGAGA
Found at i:19211975 original size:26 final size:26
Alignment explanation
Indices: 19211939--19211991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211929 GTGGACTTAG
19211939 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
19211965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
19211991 G
1 G
19211992 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:19214475 original size:26 final size:26
Alignment explanation
Indices: 19214439--19214491 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19214429 GTTGACTTAG
19214439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19214465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19214491 G
1 G
19214492 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19215381 original size:26 final size:26
Alignment explanation
Indices: 19215345--19215397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19215335 GTTGACTTAG
19215345 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
* *
19215371 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
19215397 G
1 G
19215398 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:19217166 original size:26 final size:25
Alignment explanation
Indices: 19217129--19217180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
19217119 GTTGACTTAG
19217129 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGT-TAA
19217155 GCATAC-AGAGTTCATTCCCAGTTAA
1 GCATACGA-AGTTCATTCCCAGTTAA
19217180 G
1 G
19217181 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCCAGTTAA
Found at i:19217478 original size:899 final size:902
Alignment explanation
Indices: 19212672--19217635 Score: 6606
Period size: 899 Copynumber: 5.5 Consensus size: 902
19212662 GTTGGCTTAG
* * * * *
19212672 GCATAGGGAGTTCATTCCCAATCTAAGA-CTGGACCGGACCGAGGGTTGCCGCAGAACATCCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
19212736 GCTCGGGCATGTGCTGGTGTCACATTTTTATTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
19212801 AACCTGTCCGACGGCATCGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACCTGATGTG
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19212866 CGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19212931 ACCCCCTTAAAGAGCATTTGAGATTTTACTGGTGTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19212996 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19213061 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * ** *
19213126 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT-AGTGAGAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
* *
19213190 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19213255 ATTGGCATGTAGAAATATAAAGATGTGCTTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
19213320 GCAACCCGTCCCTCTGGTTGGCGTAGTGCCCGCACGCCC-ACCGCCCGCTCGTTTCATCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGG
* * * * * * *
19213384 CTTAGACATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCAGACCAAGGGTTGTGGCGGCAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAAGA
* * * * *
19213448 TCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTCTCGCATCCCGCCCTTCTGGCCGGCT
777 TCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACT
* * * * * * *
19213513 AACCGCCTGCACGCTCATTTCGTTGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAA
842 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * * *
19213574 ACATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19213639 CACGAGCATGTGTTGGTGCCACATTTTTCTTTG-CTAGGGCACCATCGTCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
19213703 AACTTGACCGA-TGCATTGGGGTTTCGGCGATTGGGGGGGCCGGGGGGGGTGTACGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
19213767 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCACTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
19213832 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19213897 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19213962 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * *
19214027 AAATTTTAAAAAATCCTGAACTGTAAAATGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
19214092 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19214157 CATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19214222 CGCATCCCGTCTCTCTGGCCGACGTA------G--TGCCCG--C-CCGCTCGTTTTATCGATTGC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGG
* * **
19214276 CTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGAT
* ** * ** * * * *
19214341 CGGCAGC-CATAGAGGGGGACCTGGCCGATCCCCGAATTGCGAATCCCACCCCCCTGGCCTG-CT
778 CGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCC-GACT
*
19214404 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
19214465 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGATGGTTACGGTACCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19214530 CTTGGGCATGTGCTGGTGACGCATTTATCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19214595 ACCTGACCGACGGCATTGGGGTTCCGACGGTCGGGGGGGCCGCGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
19214660 GGTGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCCCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19214725 CCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19214790 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
19214854 GCATGCCAACCAAAATGCAAGGATCATGTCCACGAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
*
19214919 TTTT-AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTTTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
19214983 CCATGAAACTTCACGCGAAGGCTTAAGGGACTATTGTGTGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * **
19215048 TGGCTCACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAT
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19215113 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
651 ATCCCGTCTCTCTGGCCGGCGTA--G--CGCCCGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTT
* * * * * *
19215178 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTCAGACTGGACCGAAGGTTGCTGCAGTAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGCAGCAA
* * *
19215243 GATCAGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGT-GCATCCCGTCCCTCTGGCC-
775 GATCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTT-TCGCATCCCGCCCCTCTGGCCG
* *
19215306 AGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCG-AGTTCATTCCCAGTCTA
839 A-CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATA-CGAAGTTCATTCCCAGTCTA
19215370 A
902 A
* * ** * *
19215371 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGGGCGATGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** * *
19215436 CTCGGGCATGTGGTGGTGTTGCATTTTTATTCGTCGGGGCACCA---T-----CA-C--CGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * *
19215490 ACCTAACCGACGGCATTGGGGTTTCGATGGCCGGGGGGGCCGGTAGGGTGTGCGCACATGATTTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * ** *
19215555 CAATGGGTGCTAGTAATTGGCCCCTTATATTCACCCCCTATCACTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19215620 CACCCCCTTAAAGGGCATTTGAAATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19215685 TGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19215750 GTGCATGCCAAAAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
19215815 AATTTTAAAAAATCCCGAACCGCAAAAACTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19215880 TGCCATGAAACTTCACGTGATA-GCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19215944 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACTACCATATCAATCCACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19216009 CGCATCTCGTCTCTTTGGTCGGCGTA--G--CGCCCGCCCG--C-CCGCTCGTTTCATCGGTTAG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGG
* * * * *
19216067 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC-GACCAGACCGAGGGTTACGACACCAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGAT
* ** * * *
19216131 CGGTAGCACGGAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
778 CGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTG
* * *
19216196 AGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
19216256 GCAAATGGAGTTCATTCTCAGACTAAGATCAGACCGGACCGAGGGTTG-TGCAAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC-AGCACATGCTGG
* * * *
19216320 GCTCGAGCATGTGCTGGTACCACATTTTTCTTCG-CGGGGGCACCATCGTCGGAGCATTGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
19216384 GAACCTGACCGGCGACATTGGTGTTTCGACGATC-TGGGGGCCGGGGGGTGTGCGCACATGATCT
129 GAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
19216448 GCAATGGGTGC-AGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19216512 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19216577 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTT
* * * * * * *
19216641 TGTGGATACCAACAAAAATACAAGGGTCCCATCTACCAAGTTTGGGGCCAAAAATTCTTCCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* *
19216706 AAATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19216771 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCAT-AAAATGT
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19216835 CATTGGCACGTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19216900 CGCATCCCGTCTCTTTGGCCGGTGTAGCGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGC-CGCTCGTTTCATCGGTTG
* * * * *
19216965 GCTTAGGCATATGGAGTTTATTCCCAG-CGTAAGATCAGACCGGACTGAGGGTTACAGCAGCAAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAG
* ** * *
19217029 ATCGGTAGCACGCAGAGGGGGACCTGATCGATCCGTGGCTTTCGCATCCCGCCCTTCT-ACCGAC
776 ATCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGAC
*
19217093 TGAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
19217155 GCATACAGAGTTCATTCCCAGT-TAAGATTGGACCAGACCGAGGATTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19217219 CTCGCGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGTGTACCATCGCCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
19217284 ACCTGACTGACGGCATTGGGTTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACACGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19217349 GATTGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19217413 CCCTCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGAT-TGAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAAT
*
19217477 GGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
19217541 TCCATGCCAAC-AAAATTCAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCTTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
19217605 ATTTAAAAAAATCCCGAACCATAAAAAGTTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTT
19217636 CAACGTGAAG
Statistics
Matches: 3567, Mismatches: 423, Indels: 149
0.86 0.10 0.04
Matches are distributed among these distances:
884 4 0.00
885 215 0.06
886 2 0.00
887 47 0.01
888 198 0.06
889 80 0.02
890 187 0.05
891 313 0.09
892 436 0.12
893 13 0.00
894 30 0.01
895 66 0.02
896 65 0.02
897 216 0.06
898 241 0.07
899 488 0.14
900 87 0.02
901 25 0.01
902 118 0.03
903 466 0.13
904 45 0.01
905 30 0.01
906 193 0.05
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGG
TAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGAGC
GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:19218709 original size:26 final size:26
Alignment explanation
Indices: 19218673--19218725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19218663 TGACCTTAGG
19218673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19218699 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19218725 G
1 G
19218726 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19219597 original size:26 final size:26
Alignment explanation
Indices: 19219560--19219612 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19219550 GTTGACTTAG
19219560 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19219586 GCATAC-GAAGTTGATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
19219612 G
1 G
19219613 ATCGGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19222262 original size:25 final size:25
Alignment explanation
Indices: 19222226--19222273 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
19222216 GTTCACTTAG
*
19222226 GCATACGAAGTTCATTCCCAGTCAA
1 GCATACGAAGTTCATTCCAAGTCAA
*
19222251 GCATACGGAGTTCATTCCAAGTC
1 GCATACGAAGTTCATTCCAAGTC
19222274 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAAGTCAA
Found at i:19223626 original size:896 final size:892
Alignment explanation
Indices: 19217849--19226822 Score: 10536
Period size: 902 Copynumber: 10.1 Consensus size: 892
19217839 AAGATCGGAC
* * * *
19217849 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTTGCCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* ** * * *
19217914 TCGTCGGAGCAACGTCGGAGAAGCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC----GG--GGGG
* *
19217979 GGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
125 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCA
19218044 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAG
189 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
19218108 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
254 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
19218173 TTTTAGCTGAATATTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-
319 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** * ** *
19218237 TTAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
384 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
*
19218302 AGTAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAA-GCTTAAGGGACCATTGTA-GAATT
449 A-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
19218365 TACCAAGCCTTAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCAC
513 TA-CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * * * *
19218430 CCTATATATCCACGACTTCCGCATCCCATCTCTCTAGCCGGCGTAGTGCCCG---CCCGCCCGCC
577 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCC
* *
19218492 CGACTCGTTTTGTCGGTT-GCTTAGGCATA-GGAGTTCCTTCCCAGTCTAAGAT-TGACC-GCAC
642 CG-CTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC
* * * * * * *
19218553 TGAGGG-TGTGG-AACAGGATCGACAGCACACGGAGGGGTACCTGGCCGATTCCCGGCTAT-CGC
704 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCT-TGCGC
*** ** * * * * *
19218615 ATTTTGTGCTTCTGGCCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACCTTAGGGCATACG
767 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA-CTTA-GGCATACG
* * *
19218680 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGCA-G
830 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGG
* * * **
19218743 GTTACGACAGCACATGCTGGGCTCGGGCATGTGCAGGTGCTACATTTTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
19218808 ---TC---G-----CCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-----GG-GGGG
* * * *
19218862 GGTGTGCACACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCTTCA
125 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCA
*
19218927 TCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CAGTA
189 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTA
* * * *
19218991 GCCATTAAAGTGTCTGAAATGGGGTCGCTTTTTTCAAATGGCCACAAAAACTTGTACACTTCGAG
253 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
19219056 TTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGAT-ACATCTACCAAGTTTGGGG
318 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** ** * *
19219119 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTAAAAAATCCTAAAA
383 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
*
19219184 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
448 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-T
*
19219249 TTAC-AGCCAT-AAAAT-GCAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
512 TTACAAGCCATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
19219311 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCG
576 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCG
* * * *
19219375 CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGAC
640 CCCGCTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * **
19219440 CGAGGGTTGTGGTAGCAGGATTGACAGCATGTCA-AGGGGGACCCGGTCGATCCCTAGCTTGCGC
704 CGAGGGTTGCGGCAGCAGGATCGACAGCACG-CAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGC
* * * * *
19219504 ATCCTGCCCCTCTGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
767 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
19219569 GTTCATTCCCAATCTAAGCATACGAAGTTGATTCCCAGTCTAAGATCGGACC-GCACCGAGG
832 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGG
* ** *
19219630 GTTGTGATAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
19219692 ----C----CATCACCGGAGAACCTAACCGACGACATTAGGG-TCCGGCGATCAGGGGGGCCAGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC----GGG---GG
* * *
19219748 GGGTGTGCACACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
124 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTC
* *
19219813 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTA
188 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
19219878 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACGCATCGAG
253 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
19219942 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGTGG
318 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *
19220007 CCAAAA-TGCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAG
383 CCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
* * *
19220071 AAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAA
447 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
19220136 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCAC
512 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* ** * ** *
19220201 CCTATCGATCCACGGCTTGCG-ATCCCGTCTTTCTGGCCAACGTAGCGCCCGCATGCCCTCCCGC
577 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCCCCGCCCGC
* * * * *
19220265 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGA-C
641 CCGCTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * *
19220329 GAAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGACTTGGCCGATCCCCGGCTTGCGCA
705 G-AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCA
*** * * * * *
19220394 TCTATCCCCTCTGGCCGCCTGAGCTCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATGCGGAG
768 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
*
19220459 TTTATT-CC---C--AG--T-CGAAG--------CA---T---AT----------CGAGG
833 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* *
19220486 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
19220551 TCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGCGGTTCCGACGATTGGGGGGGCCGGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-T--------CGGG
* ** ** * *
19220616 GGGGTTGTGCGC-TGTGATGTATGATGCGTGCTGGTACTTGGCCTTTATATTGTCCCCCTATCCC
122 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCC
*
19220680 CCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
186 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
19220745 TGGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCATATGGTCACAAAAATCTTGTACACTTC
251 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTC
19220810 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
315 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * ** *
19220875 GGGTCAAAAATCCTT-CGAAAAACTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
380 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTG
* * *
19220939 AAAAGTAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGA
445 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
19221004 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA-ATGTCCCTAAACCTACCTACC
510 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
19221068 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCT
575 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCC-CC-
**
19221133 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
635 GCCCGCCCGCTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
19221198 CGGACCGAGGGTTACGGCAGCAGGATTAGTA-A-CATGCAGAGGGGGACTCGACCGATCCCCGGC
699 CAGACCGAGGGTTGCGGCAGCAGGA-TCG-ACAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGC
* ** * * *
19221261 TTGTGCATCTAGCCCCTCTGGCCGGTTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
761 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
19221326 TACGGAGTTCATTCCCAGTCTAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGA
826 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
19221391 GG
891 GG
* * * * * **
19221393 TTTACGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * ** *
19221458 TCGCCAGAGCATCACCGGAGAACCTGATCGACGGTATTAAGGTTTCGACGATCGGTGGGGCCAGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-----GG---GG
* * * *
19221523 GGGGTATGCGCACATGATGTACGATGGATGCTGGTACTTGACCTTTATATTGGCCCCCTATCCCT
123 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCCT
*
19221588 CATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGT
187 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
19221653 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCAA
252 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
19221718 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGG
317 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
*
19221783 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAA
382 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
* *
19221848 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAAT
447 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
19221913 TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT-AAGGATGTGCCTAAACCCACCTAACA
512 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCA
* * *
19221977 CCCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCCTCCGCCCG
576 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCC-CCGCCCG
* *
19222042 CCCGCTCGTTTTGTCGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-C
640 CCCGCTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * ** *
19222106 CAAGGGTTGCGGCAGTAGGATTGGCAGCATGCAGAAGGGGACCCAACCGATCCTCGGCTTGCGCA
704 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCA
* * * * * * *
19222171 TCCCACCCCTTTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAG
768 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* *
19222236 TTCATTCCCAGTC-AAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGG
833 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* ** * *
19222295 GTTGCGACAGCACATGCTGGGCTTAGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * ** * *
19222360 TCGTCGGAGCATCGCTGGAGAACCTGACCGACGGTTTTGGGGTTTCGGCGATCGGGTGGGCTGGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC----GGG--GGG
* * * * *
19222425 GGGGCATGCGTACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCTT
125 GGTG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCT
* *
19222490 CATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
187 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
19222555 AACCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGA
252 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
19222620 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGG
317 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
19222685 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
382 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
* *
19222750 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAAT
447 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * * *
19222815 TTACAAGCCATTAAAATGGCATTGGCACGTAGAAATATGACGGTGTGCCTAAAACCACCTACCAC
512 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
**
19222880 CCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGC
577 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGC
* * * *
19222945 CCGCTCTTTTCGTCAGTTGGCTTAGGCGTACGGAGTCCATTCCCAGTCTAAGATCGGACCAAACC
641 CCGCTCTTTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * * * * * *
19223010 GGGGGTTGTGGTAGCAAGATCGATAGCATGCAGAGGGGGACTCGGTCGATACCCGGCTTACGCAT
705 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCAT
* * * * *
19223075 CCCGCCCCTCTGGCCGGCTGAGTGCCCGTAGGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
769 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * *
19223140 TCATTCCCAGTATAAGCATACCAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
834 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * *
19223199 GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTCCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
19223264 TCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTTGTG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGTGTG
* * *
19223329 CACACATTATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19223394 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
19223459 AAGTGTTTGATATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * ** * * *
19223524 CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCGTGTCTGCAAAGTTTGGGGCCAAAAT
325 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
19223589 TCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCCTGAAAAATTGAA
390 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* * * *
19223654 AACGGGTAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGC
455 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
19223719 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGA
520 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
19223784 TCGACGACTTGCGCATCCCGTCTTTCTGGCCAGCCTAGTG---G----CCGCTCGCTCG---TTT
585 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCGCTCTTT
* * ** * *
19223839 TGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCA
650 TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * *
19223904 GTAGCAGGATC-AGCAGCACGCAGAGGGGGACCTGGCCAATCCCCGGCTTGCACATCCCTCCCCT
715 GCAGCAGGATCGA-CAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCT
19223968 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
778 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * ***
19224033 GTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGATTGGACCGAGG
843 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * *
19224083 GTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* *
19224148 ---TC--AGCA--A----AGAACTTGACCGACGGCATTGGGGTTCTGGCGACGGA-GGGGTCGTG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC---CGAC-GATCGGG--G-G
* *
19224201 GGGCTGTGTGCACATGATGTGTG-TGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTC
124 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTC
19224265 ATCAAACCTCGAG-ACTCACA--CCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGT
188 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGT
* *
19224327 AGCCATTAAAGTGTTTG-AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
252 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
19224390 GTTTCTAGCTGAATTATTTTGTGCGTGCCAAAAAAAATACAAGGATCA-GTCTAGCAAGTTTGGG
317 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * ** *
19224454 GCCAAAACTGCCTTCCG-AAAAATTTT-AAAAATCTCAAACCGTAAAATGTTTCAAAAATTGTGA
382 GCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGA
*
19224517 AAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
446 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
19224582 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCA
511 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
19224647 CCCTATCGATTCACGACTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCC-CCCGTCTGCCCG
576 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCG
* * *
19224711 CCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-
640 CCCGCTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * *
19224775 CGAGGGTTACGACAGCAGGATCGACATCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCA
704 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCA
** * * * * * * *
19224840 TCGTGCCCCTCTGGCCGACTGAGCTCCCGCATGCTCGTTTCATGGGTTGACTAAGGCTTACAGAC
768 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * *
19224905 TTCATTCCCAGTCTAGGCATAC-AGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGG
833 TTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
** * * * * *
19224965 GTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGAGCCACATTTTTCTTTGCCGGGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
19225030 TCG-CCGAGCGTCATCGGAGAACCTTACC-AGCGGCATTGGGGTTCCGACGATCAGGGTGGTCGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACG---A------TCGG
* * * *
19225093 GGGGGGTGTGCGCACATAATGTACGATGGATGCTGGTATTTGGCCCTTATATTGGCCCCCTATCC
121 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCC
*
19225158 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
185 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19225223 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
250 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
19225288 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATTACAAGGATCAGGTGTACCAAGTTT
315 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTT
* *
19225352 GGGGCAAAAACTCC-T-C----------T------T---GAACCGTAAAAAGTTTTGAAAATCAT
379 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGT
*
19225396 GAAAAATAGAAAACGAGTCGTCTT-TCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
444 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
19225460 AATTTACAAGCTATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTAC
509 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * * *
19225525 CACCCTATCGATCCATAGCTTGCGCATCCCATCTCTCTCGCCGGCGTAGTGCCCG---CCCGCCT
574 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCC
* *
19225587 GCTCG---TTTTGTCGGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
639 GCCCGCTCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * * *
19225648 CGAGGGTTGTGACAGCAGGATTGACAACACACAGAGGGGGCCCAGTCGATCCCCGGCTTGCGCAT
704 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCAT
* * * ** * *
19225713 CCCACCCATTTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTTGATTGACTTAGGCATACGGAGT
769 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * *
19225778 TCACTCCCAGTCTAAGCACATGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGG
834 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGG
* * * * * *
19225837 GTTACGGTAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCA
1 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
19225902 TCGTCGGAGCATCGCCGGAG-ACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGTCGGGG
66 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGG--GGGG
* * *
19225966 GGTGCACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCA
127 TGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCA
* *
19226031 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAG
189 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19226096 CCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCAAG
254 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAG
*
19226161 TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
318 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * ** *
19226226 CCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT--TAAGA
383 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGA-A
19226289 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAACGTGAAGGCTTAAGGGACCATTGTATGAA
447 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
19226354 TTTACAA-CCATAACAACGGCATTCGGCACGTAGAAATATGAAGATGTGCGTAAGACCCACCTAC
511 TTTACAAGCCATAAAAATGGCATT-GGCATGCAGAAATATGAAGATGTGCCTAA-ACCCACCTAC
* * ** *
19226418 CACCCTATCCCATCCATGGCTTTGCGCATCTGCCGTCTCTCTGGTTGGCATAGTGCCCGCCCGCC
574 CACCCTAT-CGATCCACGGC-TTGCGCATC--CCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CC
* * * *
19226483 ACTCGCGACCGCTTGTTTTGTCGGTTGGCTTAGGCCATACGGAGTT-ATTCCCAGTCTAAAGATC
634 -CGCCCGCCCGC-TCTTTTGTCGGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCT-AAGATC
* * ** * * * *
19226547 GGACCGGATCGAGGGTTGCCGATAGCAGGA-CGATAGCATGCAGA-----A-AGG--GA-CCCAG
695 GGACCAGACCGAGGGTTG-CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGCCGATCCCCG
* * * * *
19226602 GCTTACTGCATCCCTGCCCCTCTGGCCGACTGAAC-CCCCCGACAGCGTCG-TTCATGGGTCTTA
759 GCTTGC-GCATCCC-GCCCCTCTGGCCGGCTGAGCGCCCGC-AC-GC-TCGTTTCATGGGT-TGA
* *
19226665 CTTAGGCTAAACGAAGTTCATTCCCTAGTCCCCCCCTAAGGCATAC-ATGAGTTCATTCCCCAGT
818 CTTAGGC-ATACGGAGTTCATTCCC-AGT------CTAA-GCATACGA--AGTTCATT-CCCAGT
* *
19226729 CT-AGATCAGACCCGGACCGAGG
871 CTAAGATCGGA-CCAGACCGAGG
** *
19226751 GTTGCGATAGC-CATGCTGGGCTCTGGGCATGTGCT-GTG-CGCATTTTTCTTTGTCGGGGCACC
1 GTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
19226813 CTCGCCGGAG
65 ATCGTCGGAG
19226823 AACTGACCGA
Statistics
Matches: 7031, Mismatches: 778, Indels: 524
0.84 0.09 0.06
Matches are distributed among these distances:
856 59 0.01
859 2 0.00
863 3 0.00
865 4 0.00
866 2 0.00
867 33 0.00
868 9 0.00
869 349 0.05
870 270 0.04
871 91 0.01
872 439 0.06
873 122 0.02
874 259 0.04
875 45 0.01
876 36 0.01
877 18 0.00
878 36 0.01
879 32 0.00
880 169 0.02
881 49 0.01
882 360 0.05
883 308 0.04
884 394 0.06
885 33 0.00
886 85 0.01
887 338 0.05
888 199 0.03
889 318 0.05
890 27 0.00
891 50 0.01
892 86 0.01
893 18 0.00
894 83 0.01
895 29 0.00
896 483 0.07
897 31 0.00
898 39 0.01
899 54 0.01
900 97 0.01
901 49 0.01
902 686 0.10
903 253 0.04
904 222 0.03
905 8 0.00
906 120 0.02
907 413 0.06
908 107 0.02
909 9 0.00
911 4 0.00
912 34 0.00
913 30 0.00
914 36 0.01
915 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCGCTCTTTT
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
CAGCAGGATCGACAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
Found at i:19224043 original size:26 final size:26
Alignment explanation
Indices: 19224013--19224065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19224003 GTTGACTTAG
*
19224013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19224039 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19224065 G
1 G
19224066 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19224927 original size:26 final size:26
Alignment explanation
Indices: 19224893--19224945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19224883 GGGTTGACTA
* *
19224893 AGGCTTACAGACTTCATTCCCAGTCT
1 AGGCATACAGACTTCATTCCCAATCT
*
19224919 AGGCATACAGAGTTCATTCCCAATCT
1 AGGCATACAGACTTCATTCCCAATCT
19224945 A
1 A
19224946 AGATCAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
AGGCATACAGACTTCATTCCCAATCT
Found at i:19227540 original size:26 final size:26
Alignment explanation
Indices: 19227511--19227563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19227501 GTTGACTTAG
19227511 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19227537 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19227563 G
1 G
19227564 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19230186 original size:25 final size:26
Alignment explanation
Indices: 19230148--19230200 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
19230138 GGGTTGACTT
19230148 AGCATACAGAGTTC-ATTCCCAGTTCTA
1 AGCATACAGAGTTCAATT-CCAG-TCTA
19230175 AGCAT-CA-AGTTCAATTCCAGTCTA
1 AGCATACAGAGTTCAATTCCAGTCTA
19230199 AG
1 AG
19230201 TCGGAGGGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.24
25 9 0.36
26 5 0.20
27 5 0.20
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCAATTCCAGTCTA
Found at i:19230603 original size:907 final size:888
Alignment explanation
Indices: 19228505--19230860 Score: 2854
Period size: 891 Copynumber: 2.6 Consensus size: 888
19228495 CCATGGCCGG
** * * *
19228505 AGCATCGGGGGAGAACCTGACCGCGGCATTG-GGGTTCCGGCGATCGGGGGG--CGGGGGGTGTG
1 AGCATCGCCGGAGAACCTGACCGCGACATTGAGGGTTCCGACGATCGGGGGGCCCGAGGGGTGTG
* *
19228567 C-CACAA-GATGTGCGATGGGTGCT-GTA-TTGG-CCTTATATTGGCCCCCTAATCCGTCATCAA
66 CGCACAATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAA
* * * *
19228627 ACTCGA-AACCTCACA-CCCCTT-AAAGATCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCA
130 CCTCGAGAA-CTCACAGCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19228689 TTAAAGTATCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTCG-GTTT
194 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTT
* * ** *
19228753 TTAGCTGAATTTTTTTTTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTTCC
258 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCT
* * *
19228818 AAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACAGTAAAAGTTTTGAAAATCGTGAAAAAT
322 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAG-TTTCAAAATCGTGAAAAAT
* *
19228882 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAA-TTAC
386 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
19228946 AAGTCAT-AAAATGGCATT-GCATGCAGAAAT-TGAAGATGTGCCTAGACCCACCACCACCCTAG
451 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA-ACCCA-CTCCACCCTAT
* * *** *
19229008 CGAT-C-CATGCTTGCGCATCCCGT-TCTCTAGCTGGCGTAGTGCCCGCCGCCCGTTCGCTGCCC
514 CGATCCACAAGCTTGCGCATCCCGTCTCTCTAGCTGGCATAGTGCCCGCCGCCCACCCGCCGCCC
** * * *
19229070 GCCCGCTCGTTTCTTGGTTGGCTAGGCTACGGAGTCATTCTAGTCTAGATCGACCAGAACGGGGT
579 GCCCGCTCGTTTCTCAGTTGGCTAGGCTACGGAGTCAATCCAGTCTAGATCGACCAGAACAGGGT
* * * * *
19229135 TGCGCAGTGGATCGATAGCGCGCACCAAGGGGCCTGATCGATCCCAGTGGCATCTCGCCCCTCCT
644 TGCGCAGAGGATCGACAGCACGCA-CAAGGGGCCTGACCAATCCCAGTGGCATCTCGCCCCTCCT
* * * **
19229200 GGGCTGGCTGAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTGTACAGAGTTCATTCCCA
708 GGGCCGACTGAAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
* * *
19229265 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCAGTAGCACAT
773 GTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCACAT
* * * *
19229330 GTTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGCTGGGGCACCGTCGCCGG
838 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTT--CT---G-ACCGTCGCAGC
* * * * *
19229387 AGCATTGTCGGAGAACCTGACTG-GCAGCATT-AGGGTTCCGACGATCGGTGGGGCCGGCGGGGT
1 AGCATCGCCGGAGAACCTGACCGCG-A-CATTGAGGGTTCCGACGATCGG-GGGGCCCGAGGGGT
* *
19229450 GTGGGCAC-ATGATGTGCGATTGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
63 GTGCGCACAATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
19229514 AATCCTCGAGAACTCACAGCCCCTTAAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
128 AA-CCTCGAGAACTCACAGCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
19229578 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTT
192 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
19229643 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGT
257 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
*
19229708 AAAACTCCTTCCGAAAAAGTTTTAAAAAATCTCGAACCGTAAGAAGTTTCAAAATCGTGAAAAAT
322 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA-AAGTTTCAAAATCGTGAAAAAT
*
19229773 AGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
386 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
19229838 AAGCCATAAAAATCGGCATTGGCACGTAGAAATATGAAGATGTGCCTAACCCACGTCCACCCTAT
451 AAGCCATAAAAAT-GGCATTGGCACGTAGAAATATGAAGATGTGCCTAACCCAC-TCCACCCTAT
* *
19229903 CGATCCACAAGCTTGCGCATCCCGTCTCTCT-GGTCGGCATAGTGCTCGCCTGCCCAACCCGCCC
514 CGATCCACAAGCTTGCGCATCCCGTCTCTCTAGCT-GGCATAGTGCCCGCC-GCCC-ACCCG-CC
* *
19229967 GCCCGCCCGTTCGTTTCGTCAGTTGGCTAGGCATAACGGAGTTCAATCCAGTCTAG-TCAGACCG
575 GCCCGCCCGCTCGTTTC-TCAGTTGGCTAGGC-T-ACGGAG-TCAATCCAGTCTAGATC-GACCA
* * * *
19230031 GATCAAGGGTTGCGATAGCAAGGATCGACAG-ACGCA-GAGGGGCCTGGCCAATCCTC-G-GGC-
635 GAAC-AGGGTTGCG-CAG--AGGATCGACAGCACGCACAAGGGGCCTGACCAATCC-CAGTGGCA
* * *
19230091 T-TGCGCATCCTCCCTTGGCCGACTG-AGAG-CCGCACGCTCGTTTTCGTGGGTTGACTTA-GCA
695 TCT-CGC-CCCT-CCTGGGCCGACTGAAGAGCCCGCACGCTCG-TTTCATGGGTTGACTTAGGCA
* * * *
19230152 TACAGAGTTCATTCCCAGTTCTAAGCAT-C-AAGTTCAATT-CCAGTCTAAG-TCGGA-GGGACC
756 TACAGAGTTCATTCCCAG-TCTAAGCATACGAAGTTC-ATTCCCAATCTAAGATCAGACCGAACC
* *
19230212 GAGGGTT--ATGACAGCAC-TGCTGGGCCTCGAGCAATCGTGCT-GTTCCGCATTTTTCTT-T-A
819 GAGGGTTGCA-G-CAGCACATGCTGGG-CTCGAGC-AT-GTGCTGGTGCCGCATTTCTCTTCTGA
19230271 -CG-C-CAAGC
879 CCGTCGC-AGC
*
19230279 A-CATCGCCGGAGAACCTGACCGACGACATTGAGCGTTCCGACGATCGCGGGTGGCCCGAGGGGT
1 AGCATCGCCGGAGAACCTGACCG-CGACATTGAGGGTTCCGACGATCG-GGG-GGCCCGAGGGGT
19230343 GTGCGCACAATGACTGTGCGATGGGATGCTGGCCACTTGGCCCCTTAATCATTGGCCCCCTATCT
63 GTGCGCACAATGA-TGTGCGATGGG-TGCTGG-CACTTGG-CCCTT-AT-ATTGGCCCCCTA--T
*
19230408 CCCTCATCAACCTCGAGAACTCACAGTCCCTTAAAAGAGCATTCTGAGATTTTACACGGTTATGC
120 CCCTCATCAACCTCGAGAACTCACAGCCCCTTAAAAGAGCATT-TGAGATTTTACA-GGTT-TGC
19230473 TGCCAGTAGACCATTCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
182 TGCCAGTAG-CCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
19230538 ACACTTCGACTTTTTAGCTGAATTGTTTTATGCATGCCAATAAAAATACAAGGATCACATCTACC
245 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
19230603 AAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTGCAAA
310 AAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTC-AA
* *
19230668 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCAT
373 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
19230733 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
438 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AACCC
*
19230798 ATCTACCACCCTATCGATCCAC-AGCTTGCGCATCCCGTCTCTCTTAGC-GGCGTAGTGCCCGCC
502 A-CT-CCACCCTATCGATCCACAAGCTTGCGCATCCCGTCTCTC-TAGCTGGCATAGTGCCCGCC
19230861 CACCTGCTCG
Statistics
Matches: 1286, Mismatches: 108, Indels: 134
0.84 0.07 0.09
Matches are distributed among these distances:
881 1 0.00
882 19 0.01
883 19 0.01
884 4 0.00
886 10 0.01
887 19 0.01
888 2 0.00
889 15 0.01
890 43 0.03
891 281 0.22
892 37 0.03
893 26 0.02
894 12 0.01
895 37 0.03
896 21 0.02
897 26 0.02
898 23 0.02
899 8 0.01
900 21 0.02
901 63 0.05
902 49 0.04
903 33 0.03
904 50 0.04
905 65 0.05
906 38 0.03
907 198 0.15
908 137 0.11
909 28 0.02
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
AGCATCGCCGGAGAACCTGACCGCGACATTGAGGGTTCCGACGATCGGGGGGCCCGAGGGGTGTG
CGCACAATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAC
CTCGAGAACTCACAGCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGTTTCAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAACCCACTCCACCCTATCGATCCA
CAAGCTTGCGCATCCCGTCTCTCTAGCTGGCATAGTGCCCGCCGCCCACCCGCCGCCCGCCCGCT
CGTTTCTCAGTTGGCTAGGCTACGGAGTCAATCCAGTCTAGATCGACCAGAACAGGGTTGCGCAG
AGGATCGACAGCACGCACAAGGGGCCTGACCAATCCCAGTGGCATCTCGCCCCTCCTGGGCCGAC
TGAAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTCTCTTCTGACCGTCGCAGC
Found at i:19230919 original size:26 final size:26
Alignment explanation
Indices: 19230889--19230941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230879 GTTGGCTTAG
19230889 GCATACAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCATTCCCGA-TCTAA
*
19230915 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACAGAGTTCATTCCCGATCTAA
19230941 G
1 G
19230942 ATCGGACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCGATCTAA
Found at i:19231642 original size:26 final size:26
Alignment explanation
Indices: 19231612--19231664 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19231602 GTTGACTTAG
*
19231612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19231638 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19231664 G
1 G
19231665 ATCAGACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19234123 original size:26 final size:26
Alignment explanation
Indices: 19234094--19234146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19234084 GTTGACTTTG
* *
19234094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
19234120 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
19234146 G
1 G
19234147 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:19235875 original size:26 final size:26
Alignment explanation
Indices: 19235839--19235895 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
19235829 ATGGGTTGAC
*
19235839 CTAAGCATACGGAGTTCTTTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
19235865 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
19235891 CTAAG
1 CTAAG
19235896 GTCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:19236726 original size:25 final size:26
Alignment explanation
Indices: 19236678--19236729 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19236668 GTTGACTTAG
19236678 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19236704 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19236729 G
1 G
19236730 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19237051 original size:834 final size:826
Alignment explanation
Indices: 19235450--19237111 Score: 2439
Period size: 834 Copynumber: 2.0 Consensus size: 826
19235440 CCCGAACCGT
* *
19235450 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTGATGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** *
19235515 CTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCACATAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * *
19235580 TGTGCCCAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
131 TGTGCCCAAACCCACCTACCAACCTATCGATCCACGACGTGCGCATCCCGTCTCTCTGGCCGACG
* *
19235645 TAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
196 TAGTGCCCGCCCGCCCGCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* *** *
19235710 GATCAAACCGAACTGAGGGTTACGGTAGCAGGATCGGTAGCATGTAGAGGGGGACCCGATCGATC
261 GATCAAACCGAACTGAGGGTTACGGTAGCAGGATCGGCAGCACACAGAAGGGGACCCGATCGATC
* ** * *
19235775 CTCGACTTACGCATCCCGTTCCTCTGGCCGACTGAGCGCCTGCACGCTGGTTTCATGGGTTGACC
326 CCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACC
* *
19235840 TAAGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCA
391 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
19235905 GACTGAGGGTTGCAGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCG
456 GACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
* * * *
19235970 GGGCACCATCACCGGAGTATCATCGGAGAACCTGACTTGCGGCATTGGGGTTTCGGTGATCGGGG
521 GGGCACCATCACCGGAGCATCATCGGAGAACCTGACTCGCGGCATTAGGGTTTCGGTGATCAGGG
* *
19236035 GGGCCCGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCC
586 GGGCCAGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCC
* * * *** *
19236100 TATCCCTTATCAAACCTCGAGAACTCATAGCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
651 TATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGAATTTACAGGTTTGC
* *
19236165 TGCCAGTAGCCATTAAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
716 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
19236230 ACTTCGAGTTTTTAGCTGAATTGTTCTGTGCATGGCAATAAAAATAC
781 ACTTCGAGTTTTTAGCTGAATT-TTCTAAGCATGCCAACAAAAATAC
19236277 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** *
19236342 CTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGATGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * *
19236407 TGTGCCTAAACCCACCTACCAACCTATCGATCCACGACGTGTGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCCAAACCCACCTACCAACCTATCGATCCACGACGTGCGCATCCCGTCTCTCTGGCCGACG
* *
19236472 TAGTGGCCGCCCGACCGCCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
196 TAGT----G--C--CCGCCCGCCCGCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCC
* * * * ** * * *
19236537 CAATCTAAGATCAGACTGGATTGAGGGTTGTGGTAGTAGTATTGGCAGCACACAGAAGGGGACCC
253 CAATCTAAGATCAAACCGAACTGAGGGTTACGGTAGCAGGATCGGCAGCACACAGAAGGGGACCC
* * * * *
19236602 -AGTTGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGT
318 GA-TCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCAT
* *
19236666 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTAAG
382 GGGTTGACCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
19236730 ATCGGACCGGACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTT
447 ATCAGACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
* * *
19236795 TCTTCGTCGGGGCACCATCACCGGAGCATCATCTGAGAACCTGAC-CGATGGTATTAGGGTTTCG
512 TCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACTCG-CGGCATTAGGGTTTCG
* * * *
19236859 GTGATCAGGGGGGCCAGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
576 GTGATCAGGGGGGCCAGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTAT
** *
19236924 ATTCGCTGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATATAGAGCATTTGAGAATTT
641 ATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGAATTT
*
19236989 ACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
706 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
19237054 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAAGCATGCCAACAAAAATAC
771 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTAAGCATGCCAACAAAAATAC
19237110 AA
1 AA
19237112 GGATCATGTC
Statistics
Matches: 740, Mismatches: 85, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
827 184 0.25
831 1 0.00
833 23 0.03
834 334 0.45
835 198 0.27
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (826 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACACAGAAATATGAAGA
TGTGCCCAAACCCACCTACCAACCTATCGATCCACGACGTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCGCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
GATCAAACCGAACTGAGGGTTACGGTAGCAGGATCGGCAGCACACAGAAGGGGACCCGATCGATC
CCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACC
TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
GGGCACCATCACCGGAGCATCATCGGAGAACCTGACTCGCGGCATTAGGGTTTCGGTGATCAGGG
GGGCCAGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGAATTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTCTAAGCATGCCAACAAAAATAC
Found at i:19239372 original size:26 final size:26
Alignment explanation
Indices: 19239336--19239388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19239326 GTTGACTTAG
* *
19239336 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19239362 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19239388 G
1 G
19239389 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19240263 original size:26 final size:26
Alignment explanation
Indices: 19240234--19240286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19240224 GCTGACTTAG
19240234 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
19240260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19240286 G
1 G
19240287 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19242051 original size:26 final size:26
Alignment explanation
Indices: 19242015--19242070 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19242005 TGGGTTGACT
*
19242015 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
*
19242041 TAAGCTTACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
19242067 TAAG
1 TAAG
19242071 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:19242956 original size:26 final size:26
Alignment explanation
Indices: 19242920--19242972 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19242910 GTTGACTTAG
19242920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19242946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19242972 G
1 G
19242973 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19243658 original size:890 final size:890
Alignment explanation
Indices: 19238172--19250524 Score: 14659
Period size: 898 Copynumber: 13.8 Consensus size: 890
19238162 GAATATACAA
* * * *
19238172 GCCTAAACCCACCTACCAACCTATCAATCCA-GGACTTGCGCATCTCGTCTCTCTGGCTGGCGTA
1 GCCTAAACCCACCTACCACCCTATCGATCCACGG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * ** *
19238236 GTGCCCGTCGGCCTGCCCGATCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCA
65 GT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * ** * ** *
19238301 GTCTAAGATCAGACCGGATCGAGGGTTACAGCAACAGGATTGATAGTACATAGAAGGGGG-CTCG
129 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCG
** * * *
19238365 GTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGG
193 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
** *
19238430 GTTGACTTAGGCATACAAAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
258 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
19238495 CAGACCAGACCGAGGGTTGCGGCACCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
323 CAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * *
19238560 TTC-ACCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG---T-CGGTTCCGACG
388 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * * *
19238620 ATCGAGGGAGCCGAGGGGGTGTGCACACATGATGTGCGGGGTGCTGGTACTTGGCCTTTACATTG
453 ATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTGC--GATG--GGTGC-TGG--TAT-C-TTG
* *
19238685 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAG
507 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
19238750 GTTTGCTACCAGTAGCCATTAAAGT-TCTTGTGAAATGGGGACATTTTTTTTCCAATTGTCACAA
572 GTTTGCTGCCAGTAGCCATTAAAGTGTC---TGAAATGGGGACA-CTTTTTTCAAATGGTCACAA
* * *
19238814 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGCCAACAAAAATATAAGGATCA
633 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
19238879 CGTCTACCAAGTTTGGGGCCAAAATTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
698 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
19238944 GTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAA
763 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
19239009 GGGACCATTGTCTGAATTTAGAAGCCACAAAAATGGCATTGTTACAT--AGAAATATGAAGATGT
828 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG--GCATGCAGAAATATGAAGATGT
* * *
19239072 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCTGGTGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * **
19239137 T---GCCCGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTCAGGCATACCTAGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
19239199 CTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGGCAGCATGCAAAGGGGGGCCC-AGC
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-C
* * * * ** * *
19239263 CGATCACCGGCTTGTGCATCCCGCCCCTCAGGCCGGCTAAGCGCCCGCACATTCATTTTGTGGGT
195 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
19239328 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
260 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
*
19239393 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
325 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
19239458 CGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTTCAACGAT
390 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
19239523 TGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGT
455 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----TTGGC
* * *
19239588 CCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGTGCGTTTGAGATTTTACAGGT
509 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
19239653 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
574 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* **
19239718 GTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGGGAACAAAAATACAAGGATCACGTCTA
639 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * * **
19239783 AAATAGTTTCGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTC
704 CCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
19239848 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
768 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
19239913 CATTGTATGAATTTACAAGCCAT-AAAATGGCATTTGCATGCAGAAATATGAAGATGT
833 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
19239970 GCCCAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19240035 T---GCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGTGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
19240097 CTAAGATCAGA-CAGGACCAAGGGTTGCGGCAGTAGGATCGGCAGTACGCAGAGGTGGACACGGC
131 CTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * * *
19240161 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCTGTACGCTCGTTTCGTGGGC
195 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
19240226 TGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCC
260 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
19240291 GACCAGACCGAGGGTTGCAGCAGCACTTGCTAGGCTCGGGCATGTGCTGG-GACCGCATTTTTCT
325 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTCT
* * * * *
19240355 TCATCGGGGCACCATCGTCGGAGCATTGTCGGAGAACTTGA-CTAGCGGCATTGGGGTTCCGACG
389 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACG
* * * *
19240419 ATCGGGGGGCCGGGGCAGGAGTGCACACTTGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
453 ATCGGGGGGCCGGGG--GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----T
*
19240484 TGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTA
505 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTA
*
19240549 CAGGTTTGCAGGCCAGTAGCCATTAAAGGTGTCTGCAAAATGGGGACACTTTTTTCAAAATGGTC
569 CAGGTTTGC-TGCCAGTAGCCATTAAA-GTGTCTG--AAATGGGGACACTTTTTTC-AAATGGTC
* * *
19240614 ACAAAATCTTGTACCACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCCTGGCAACAAAAATACAAA
629 ACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
** * *
19240678 GATCACGTCCTACCAAGTTT-GGGCCAAAACTCCTTAAG-AAAAATTTTAAAAAATCACAAACCG
693 GATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
19240741 TAAAAAGTTTCAAATATCGTGAAAACATAGAAAACGAGTCGTCCTGCCACGAAACTTCACGT-AA
757 TAAAAAGTTTCAAAAATCGTGAAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
19240805 GGCTT-AGGGACCAATTGTATG-ATTTACAAGCGCCATAAAAATGGCATTGGTATGCAG-AATAT
821 GGCTTAAGGGACC-ATTGTATGAATTTACAA--GCCATAAAAATGGCATTGGCATGCAGAAATAT
19240867 GAAGATGT
883 GAAGATGT
** *
19240875 GCC-AAACCCACCTTAGCCACCCTATCGAT-CACGGCTT-CTGCATCCTATCTGT-TGGCCGGCG
1 GCCTAAACCCACC-TA-CCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGGCG
* * * * * *
19240936 TAATGCCACCCGCCCGCCCG-CCGCTTGTTTCATCGGTTGGCTTAGGCAT-CGGAGTTCATTCGC
63 TAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * * * *
19240999 AATCTAAGATCA-ATGAGACTGAAGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACTCG
128 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
19241063 ACCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGTCCGCACGCTCGTTCCGTGG
193 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
19241128 GTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAA-CAT-C-GA----A---CC-G-----GAT
258 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
19241177 ----------TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACCTTTTTC
323 CAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
19241232 TTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGGCGGTATTGGGGTTCCGACG
388 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
19241297 ATCGAGGTGGCCGCGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
453 ATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----T
* * * * *
19241362 TGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGGGCGTTTGAGATTTTAT
505 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
19241426 AGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCAC-AA
570 AGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
19241489 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATACGAACAAAAATAAAACGATCAC
634 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * **
19241554 GTCTACCAAGTTTGGGGCCAAAACTCCTCCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
699 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
19241619 TTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAG
764 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * ** *
19241684 GGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGACGGGCTGAAATATGAAGATGT
829 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
19241746 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTGTCGGGCTGGCGTAA
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
19241811 TGCCCACCCGCCCGCCAGCCCACTCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
66 T-CCCGCCCGCCCGCC--CGC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
19241876 CCAGTCTAAGATC-GAATCAGACTGGGGGTTGTGGCAGCAGGATCGGTAGCATGCAGAGGGGGAC
126 CCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
19241940 TCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGACTAAGCGCCCGCACGCTCGTTTCG
190 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19242005 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAATCTAA
255 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19242070 GATCGGACCGGATCGAGGGTTGCGGCAGCCCATGCTGGGCTAGGGCATGTGTTGGTGCCGCATTT
320 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* ** ** *
19242135 TTCTTCGTCGAGGCACCATCGTCGGAATATCATCGGAGAACCTGACCGACGGTATTGGGGTTCCG
385 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
*
19242200 ACGATCGGGGTGGCCGGGGGGTGTGCGCACATGAAGTGCGATGGGTCCTAGTACTTGGCCCTTAT
450 ACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGG---T-G--C-TGG----TAT
*
19242265 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
503 CTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
19242330 ACAGCTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAA
568 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
19242395 AATCTTGTACTCTTCGAGTTGTTGGCTGAATTTTTTTATGCATGCCAACAATAATAC-AGCGATC
633 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATC
* * *
19242459 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCAGAACCGT-AAA
697 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* ** * * * *
19242523 AGTTTAAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCATGTGTAGGCTTA
762 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
19242588 AGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGT
827 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
19242652 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19242717 TGCCCGCGCGCCCGCCCGCCCGCTCGTTTTGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAG
66 T-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
19242782 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC
130 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
*
19242847 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
195 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
19242912 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
260 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * *
19242977 GACCGGACCGAGGGTTACAGTAGAACATGCTGGGCTTGGGCATGTGCTGGTGTCACAATTCTCTT
325 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
19243042 CGTCAGGGCACCATCG-CTGAAGCAACGCCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGA
390 CGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
19243106 TCAGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTA-CTTGGCCCCCTATCC
454 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATCTTGGCCCCCTATCC
* *
19243170 CTCATCATACCTCGATAACTCAC-CCCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
518 CTCATCAAACCTCGAGAACTCACACCC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
19243234 AGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAGTT
582 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
19243299 AGAGTTTTTAGCTGAATTTTTTT-TGCATACCAACCAAAATACAAGGATCAGGTCTACCAAGTTT
647 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** *
19243363 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT
712 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
19243428 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ATTGTGAAGGCTTAAGGGACCATTCTAT
777 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTAT
*
19243492 GAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
841 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
19243542 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTATCCCGTCTCTCTAGCCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19243607 TACCCGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTGATTCCCAG
66 T-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * ** * * * *
19243672 TCTAAGATCGGATC-GAACTGAGAGTTGTGGCAATAGGATCAGCAGCATGCAGAGGGGGACTCGG
130 TCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * *
19243736 TCAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGG
194 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
19243801 TTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
259 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *** * *
19243866 AGACCAGACCGAGGGTTGCAAAAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGGATTTTTCT
324 AGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * ** *
19243931 TCACCGGAGCACCATCGTCGGAGCATCACCGGAGAACCTAACTAACGGCATTGGGGGTTCTGACG
389 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT-GGGGTTCCGACG
* * * * *
19243996 ATTGGGGGGTC-GGGGGTGTACACACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTG
453 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG---T-G--C-TGG----TATCTTG
*
19244060 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAG
507 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19244125 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
572 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
19244190 TTGTACACATCTAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATAAAAGGATCACGTT
637 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19244255 TACCAAGTTTGGAGCCAAAAATCCTTCCGAAAATATTTTAAAAAATCCC-AAGCTGTAAAAAGTT
702 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTT
* * * * * *
19244319 TTAAAAATTGTGAAAAATAGAAAACAAGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGG
766 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
19244384 ACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCA--CATAAAACTATGAAGATGT
831 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-GAAA-TATGAAGATGT
* * * * *
19244444 GCTTAAACCCACCTACCACCTTATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGTCGACGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19244509 T---GTCCGCCCGCCCACCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** *
19244571 CTAAGATCAGACCAGACAGAGGGTTGCGGCAGCAGGATCGACGGCACGTAGAGGCAGACCCGATC
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * *
19244636 GATCCCTGGCTTGCGTATCCCGACCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTT
196 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
19244701 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
261 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
19244766 ACCGGACCGAGGGTTACGGCAGCCCATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
326 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * **
19244831 CTCGGGGCACCATCGTCGGAGCATTGCCAAAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
391 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * *
19244896 GGGGGCCCGGGGGGTGTGTGCATATGGTGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGCT
456 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----TTGGCC
* * *
19244961 CCCTATCCCTCATCAAACCTTGAGAAGTCACACCCCCTTAAAGAGCATTTGAGA-TTTATAGGTT
510 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
19245025 TACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
575 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* ** * *
19245090 TACACTTTGAGTTTTTAGCTGAATTGCTTTATGCATGCCAACAAAAATACAAGGATCATGTCTAC
640 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * **
19245155 CAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCCAACCATAAAAAGTTTTGA
705 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
*
19245220 AAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
770 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
19245285 TTGTAAAGTGAATTTACAAGCCATAAAAATGCCATTGGCATGCATAAATATGAAGGTGT
835 TTGT--A-TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
19245344 GCCTAAA-CCACCTA-C-CCCTATCGATCCACGGCTTGTGCATTCCCGTCTCTCTGGGCAGGCGT
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTCT-GGCCGGCGT
* * *
19245406 TGTACCCGCCCGTCCCCGCCCGCACGCTCGTTTTCGGTCAGTTGGCTTTAGGCATACGGAGTTCA
64 AGT-CCCGCCCG--CCCGCCCGCCCGCTCG-TTTC-GTCGGTTGGC-TTAGGCATACGGAGTTCA
* * * * * * **
19245471 TACCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGTA-CTAGGATCGACAGCTTGCAGAGGGG
123 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC-AGGATCGGCAGCACGCAGAGGGG
* ** * *
19245535 GAACC-AGTTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGT
187 GACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
19245599 TTCAATGGGTTGACTTAGGCATACGGAGCTCAATTCCCAGTCTAAGCATACGAAGTTCATT-CCA
251 TTC-GTGGGTTGACTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
19245663 GTCTAAGATCGGACCGGATCGAGGGTTACGACAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCC
314 GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * ** *
19245728 TGCATTTTTCTTCACCCGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC-A-GCGCATTG
379 -GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG-GCATTG
*
19245791 GGGTTCCGACGATCAGGGGGGTCGGGGGTGGGGGGTGTGCGCACATTGATGTGCGATGGCTGCTG
442 GGGTTCCGACGATC-GGGGGG-C-----CGGGGGGTGTGCGCACA-TGATGTGCGATGG--G-T-
*
19245856 GTACTTGGCCCTTATTTTGGCCCCCTAT-CCTCATC-AACCTCGAGAACTCACACCCCCTTAAAG
495 G--C-TGG----TATCTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
19245919 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
553 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19245984 TTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
618 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
19246049 AAAATAAAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAAT
683 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
19246114 CCC-AAGCCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACT
748 CCCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * **
19246178 TCACGTGAAGGCTTAAAGGACCACTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACACA-
812 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
19246242 AAACTATGAAGATGT
877 AAA-TATGAAGATGT
* * * *
19246257 GCTTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCCGGTGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
19246322 T---GTCCGCCCGCCCGCCCGCTTGATTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** * ** **
19246384 CTAAGATCAGACCAAACGGAGGGTTGCGACAGCAGGATCGGTGGCACGTAGAGGCAGACCCGGTC
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
** * * * *
19246449 GATCCCTAGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGTTT
196 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19246514 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAG
261 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
19246579 ATCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
326 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * ** * *
19246644 CTTGGGGCACCATCATCGGAGCATTGCCAAAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC
391 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * *
19246709 GGGGGCCCGGGTGGGTGTGTGCACATGGTGTGCGATGGGTGCTGGTACTTGGAACTTATATTGGT
456 GGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----TTGGC
* * *
19246774 CCCCTATCCCTCATCAAACCTTGAGAAGTCACACCCCTCTTAAAGAGCATTTGAGATTTTATAGG
509 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGG
* *
19246839 TTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCT
573 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19246904 TGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCATGTCT
638 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
19246969 ACCAAGTTTGGGGCCAAAA-TACCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
703 ACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** *
19247033 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
767 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
19247098 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
832 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
19247157 GCCTAAACCCACCTACAACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
19247222 TGCCCGCCAGCCCGCCCGCCTGCTCGCTCGTTCCGTCGATTGGCTTAGACATACGGAGTTCATTC
66 T-CCCGCCCGCCCGCCCG-C--C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
19247287 CCTA-TCTAAGATCAGACCAGACCGAGGGTTGCGGCCGCAGGATCGACAGCATGCAGAGGGGGAC
126 CC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * * *
19247351 CCGACCGATCCCTGGCTTTC-AATCCTGCCCCTCTGGCCGGATGAGCGGCCGCACGCTTGTTTCG
190 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
19247415 TGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCTAGTGTAA
255 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19247480 GATCAGACAGGAACGAGGGTT-CGACAGCACATGCTGGGCTCTGGCATATGCTGGTGCCGCATAT
320 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * ** * * * *
19247544 TTATCCGTCGGGGCACCATCACCGAAGCAACGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCG
385 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
19247609 ACGATCGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
450 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----
19247674 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
504 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
19247738 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
569 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
19247803 ATCTTGTACACTTAGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAAATACAAGGATCA
634 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCA
* *** * *
19247868 TGTCTACCAAGTTTGTTCCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
698 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
19247933 GTTTCAAAAGTCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
763 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
19247998 GGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATGTGAAGATGT
828 -GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
19248062 GCCTAAAACCACCTACCA-CCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * * * *
19248126 T---GCTCGCCCGCCTGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** * * * * *
19248188 CTAAGATCAGATCAGACCGAGGGCTGCGGTGGTAGGATCGACAGCACGTAGAGGGGGACTCGGCC
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * *
19248253 GTTCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTT
196 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19248318 GACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C-G-G---------A---T----T---
261 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
19248360 ---GGACCGAGGGTTGTGGCACCACATGCTGGGCTCGAGCATTTACTGGTGCCGCATTTTTCTTC
326 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
19248422 GTCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
391 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * *
19248487 -GGGGGCTGGGGGGTATGCGCACATGATGTACGAAGGGTGCTGGTACTTGGCCCTTATATTGGCC
456 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----TTGGCC
* * *
19248551 CCCTATCCGTCATCAAACCTCAAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTT
510 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
19248616 TGCTGCAAGTACCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
575 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
19248681 TACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCACGTCTGC
640 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** **
19248746 CAAGTTTGGGGCCAAAACTCCTTCTGAGAAAATTTTAAAAAATCCAAAACCGTAAAAAGTTTTGA
705 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
19248811 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAGGCTTAAAGGACCA
770 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * **
19248876 TTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
835 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * **
19248932 GCCTAAACCCACCGACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTTTGGATGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19248997 T-----------GCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * * * * **
19249051 CTAAGATCAGACCGGATAGAGGGTTGCGGTAGTAGGAAT-GGCCGCACGTAGAGGCGAACCCGGT
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGAC
* * *
19249115 CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTCCGTGGGT
195 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
19249180 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCG
260 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
19249244 GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTT
325 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* *
19249309 CGTCGGGGCACCATCGT-----CA------GAGAACCTGACCGGCGGTATTGGGGTTCC-AGCGA
390 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGA
* * *
19249362 TCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGAGTGCTGGTAGTTGGCCCTTATATTG
454 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC---GA-TG--GGT-GCTGG----TATCTTG
* * * *
19249427 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAAAAGCATTTCAGATTTTACAG
507 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19249492 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT
572 GTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
19249556 CTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
636 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * * **
19249621 CTGCCCAGTTTGGGGTCAAAACTCCTTCTGAGAAAATTTTAAAAAATCCCAAATTGTAAAAAGTT
701 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * * * *
19249686 TCAAAAATCATTAAAAAAAAAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGT
766 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
19249751 ACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCA-GACAGAAATATGAAGATGT
831 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGT
* *
19249811 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGGCCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
19249876 T---GCCCACCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
66 TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** ***
19249938 CTAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGCAGACCCGGTT
131 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * **
19250003 GATCCCTGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTTATTTCGTGGGTT
196 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
19250068 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
261 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
19250133 ACTGGACTGAGGGTTGCGGCAGCACATGATGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
326 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
19250198 GTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGACAGTATTGGGGTTCCAATGATC
391 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* *
19250252 GGGGGGGCCGGGGGGGTGTGCGCGCATGATGTGCGATGAGTGCTGGTAGTTGGCCCTTATATTGG
456 -GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C-----TTGG
*
19250317 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGG
508 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
19250382 TTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATC
573 TTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
19250446 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAGAAAAATACGAGGATCACAT
637 TTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
19250511 CTACCAAGCTTGGG
701 CTACCAAGTTTGGG
19250525 CATGTGCTGG
Statistics
Matches: 9984, Mismatches: 1156, Indels: 636
0.85 0.10 0.05
Matches are distributed among these distances:
863 191 0.02
864 4 0.00
865 2 0.00
866 1 0.00
869 31 0.00
870 192 0.02
871 376 0.04
872 278 0.03
873 13 0.00
874 7 0.00
875 16 0.00
876 30 0.00
877 38 0.00
878 208 0.02
879 473 0.05
880 145 0.01
881 3 0.00
882 8 0.00
883 7 0.00
884 1 0.00
885 6 0.00
886 10 0.00
887 205 0.02
888 207 0.02
889 284 0.03
890 717 0.07
891 18 0.00
892 3 0.00
893 4 0.00
894 9 0.00
895 18 0.00
896 380 0.04
897 434 0.04
898 941 0.09
899 209 0.02
900 580 0.06
901 300 0.03
902 619 0.06
903 239 0.02
904 505 0.05
905 490 0.05
906 625 0.06
907 274 0.03
908 242 0.02
909 108 0.01
910 81 0.01
911 2 0.00
912 6 0.00
913 47 0.00
914 18 0.00
915 51 0.01
916 295 0.03
917 23 0.00
919 1 0.00
920 1 0.00
921 1 0.00
923 1 0.00
924 3 0.00
926 1 0.00
928 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATCTTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
Found at i:19243839 original size:26 final size:26
Alignment explanation
Indices: 19243810--19243862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19243800 GTTGACATAG
19243810 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19243836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19243862 G
1 G
19243863 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19244737 original size:26 final size:26
Alignment explanation
Indices: 19244708--19244760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19244698 GTTGACTTAG
*
19244708 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19244734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19244760 G
1 G
19244761 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19245666 original size:25 final size:27
Alignment explanation
Indices: 19245617--19245669 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
19245607 GTTGACTTAG
*
19245617 GCATACGGAGCTCAATTCCCAGTCTAA
1 GCATACGAAGCTCAATTCCCAGTCTAA
*
19245644 GCATACGAAGTTC-ATT-CCAGTCTAA
1 GCATACGAAGCTCAATTCCCAGTCTAA
19245669 G
1 G
19245670 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.42
26 3 0.12
27 11 0.46
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (27 bp):
GCATACGAAGCTCAATTCCCAGTCTAA
Found at i:19246557 original size:26 final size:26
Alignment explanation
Indices: 19246521--19246573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19246511 TTTGACTTAG
19246521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19246547 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19246573 G
1 G
19246574 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19249226 original size:25 final size:26
Alignment explanation
Indices: 19249188--19249239 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19249178 GTTGACTTAG
19249188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19249214 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19249239 G
1 G
19249240 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19250104 original size:26 final size:26
Alignment explanation
Indices: 19250075--19250127 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19250065 GTTGACTTAG
19250075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19250101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19250127 G
1 G
19250128 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19251387 original size:27 final size:26
Alignment explanation
Indices: 19251343--19251396 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
19251333 TTGACTTATC
*
19251343 GCATACGGAGTTCAATTCCTAGTCTAA
1 GCATACGGAGTTCAATTCC-AGTATAA
*
19251370 GCATACGGAATTTC-ATTCCAGTATAA
1 GCATACGG-AGTTCAATTCCAGTATAA
19251396 G
1 G
19251397 ATCAGACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAATTCCAGTATAA
Found at i:19252619 original size:903 final size:902
Alignment explanation
Indices: 19250524--19264845 Score: 15816
Period size: 902 Copynumber: 16.0 Consensus size: 902
19250514 CCAAGCTTGG
* * **
19250524 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTATTGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* *
19250589 ACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGGGTGTTCGCACATGATGTGCAA
65 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGA
* *
19250654 TGGGCGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
126 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19250718 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGA
191 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19250783 GACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGTAC
256 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
19250848 ATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAAC-GCTATGC-AACAAAA
321 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAA-AAAA
**
19250911 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
384 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19250976 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
449 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
19251041 TGGAACGCAGAAATAGGAAGATGTTCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGC
514 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
19251106 ATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCTACCCGCCCGCCCACCCGCTTGTTTCGTCAGTT
579 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGCCCGCTCGTTTCGTCGGTT
* * * * *
19251171 GGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACC-GAGGGTTGAGACAGCAA
640 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAG
* * * * * * *
19251235 GATC-AGCAGCAATGCAGAGGGGGACCCAGATCGATCCTCGACTTTCCGCATCGCCACCCCTCTG
705 GATCGA-CAGC-ACGTAGAGGGGGACCC-GACCGATCCCCGGC-TTGCGCATC-CCGCCCCTCTG
* * * * *
19251299 GCCCGATCTGAGTGCCCGCACGCTCATTT-GTGGGTTGACTTATCGCATACGGAGTTCAATTCCT
765 G-CCG-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTC-ATTCCC
* * * * *
19251363 AGTCTAAGCATACGGAATTTCATT-CCAGTATAAGATCAGACAAGG-CCTGAGGGTTGCGGCCGC
826 AGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGAC-CGGACC-GAGGGTTGCGGCAGC
19251426 TACATGCTAGGGCTC-A
888 -ACATGCT-GGGCTCGA
* * **
19251442 GGCCATTGTGCTGGTGGCCGCA-TTTTCTTCGT-CGG-AGCATCGCCCGGAG-A--ACC-TTG-A
1 -G-CA-TGTGCTGGT-GCCGCATTTTTCTTCGTGGGGCACCATCG-CCGGAGCATCACCGGAGAA
* * *
19251499 --TG--CGGCGGCATTAGGGGGTTTCGACGATC-GGGGGTCGGGGGGCGTGCGCACATGATGTGC
61 CCTGACCGGCGGCATT--GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
19251559 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
124 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19251624 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGCCTGAAATG
189 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19251689 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGACTTTTTTTGT
254 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * **
19251754 GTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACACCTTGTGAAAAAA
319 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
19251819 TTTGAAAAAATCTTGAACTGTAAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
384 TTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19251884 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
448 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
19251949 TTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACAAACCACCCTATCGATCCATGGCTTGCG
513 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19252014 CGTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCTGTTCATTTCGTCGGTTGGC
578 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
19252079 TTAGGCATACGGAGTTCATTCCTAGTGTAAGATCGGGCCGCA-CAGAGGGTT-CTGGCAGCAGGA
643 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGC-GGCAGCAGGA
* * * * *
19252142 TCAACAGCACGTAGAGGGGGACTCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
707 TCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
19252207 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCAAAGCAT
772 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * **
19252272 ACAGAGTTGATTCCCCGTCTAAGATCGGACCGGACTGAGGGTTGCGAAAGCACATGCTGGGCTCG
837 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
19252337 A
902 A
* * * * *
19252338 GCATGTGCTGATGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCACCGGCGAACCAG
1 GCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
** **
19252403 ACCAACACCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
19252468 TGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATGAAACGTCAAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19252533 TAAAGAGCATATGAGATGTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19252598 CTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGTATGC
260 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** * *
19252663 CAAAAAAAATACAAGGATCACGTCCAAAAATTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAA
325 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
19252728 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
390 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * *
19252793 AACTTCACGTGATGGCTTAAGAGACCATTGCATGAATTTGCAAGCCATAACAATGGCATTGGCAC
455 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
19252858 ACAGAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
520 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
19252923 TCTCTCTGGCCGGCATAGTGCCCGTCCGCACGCACGCCCGCCCGCTCGTTTCTTCGATTGGCTTA
585 TCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
19252988 GGCATACGGAGTTCA-TCCCTAGTCTAACATCAAACCGGA-CTGCGGGTTGCGGGAGAAGGATTG
646 GGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCG
* * * ** * * *
19253051 GCAGGACGCAGAACGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCATTCTAGCCGGCTGA
710 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCCGGCTGA
* * * * * *
19253116 GCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTCCTAGTCTAAGCATAT
774 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * ** *
19253181 GGAGTTCATTCCCAGTCTAAGATC-G-CTGGACCGATGGTTACGGCAGCACATGCTGGTTTCGG
839 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * * ** *
19253243 GCATGTGCTGGTGCAGCATTTTTCTTCCTCGGGGTACCATCGTCGAAGCATCGTCGGAGAACTTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * *
19253308 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGACGTGTGATGG
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* ** *
19253373 CTGCTGGTACTTGGCCCTTATATTGG-CCATTTTCCCTCATCAAACCTCGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19253437 TTAACGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19253502 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * *
19253567 CCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTA
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *
19253632 AAAAATCCCGAACCGCAAAAAATTTTGAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATG
389 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19253697 AAAGTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
19253761 CACAAATAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
519 TGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
19253826 TGTCTCTCTGGCC-AGCGTAGTGCCTGCCTG--C-C-CGCCCGCTCATTTCATCGGTTGGTTTAG
583 CGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
19253886 GCATACGGAGTTGATTCCCAGTCTAAGATCAGACTGGACC-GAGGGTTGCGGCAGCAGGATTGGC
647 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGAC
** ** * * *
19253950 AAAACACAGCA-GGGGACCCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGC
712 AGCACGTAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
19254014 GCCCACACGCTCATATT-TTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCAAATG
776 GCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * * *
19254078 GAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTGTGGTAGCACATACTGGCCTCGG
840 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * *
19254141 GCATGGGATGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* *
19254206 ACCGGCGGCATTGGGGTTCCCG-CGATCGGGGGCCCCGTGGGGGTGTGCACACATGATGTGCGAT
65 ACCGGCGGCATTGGGGTT-CCGACGATCGGGGG-GCCG-GGGGGTGTGCGCACATGATGTGCGAT
19254270 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19254335 CTTTAAA-AGAAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
192 CCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19254399 GACA-TTTTTTCCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
256 GACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
19254463 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAATAA
320 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AA
* * *
19254527 TTTTAAAAAATCCCGAACCATAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
384 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * * *
19254592 CCACGAAACTTCACGTGAAGTCTTAAGGGGCCATTGTATCAATTTACAAGCCATAAGAATGCCAT
449 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * *
19254657 TGGCATGCAGAAATATGAAGACGTGTGTAAACCCACCTGCCACGCTATCGATCCACGGCTTGCGC
514 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19254722 ATCCCGTCTCTC-AGCCGGA-GTAGTGCCCGCCCACCCG-TCCGCCCGCTCGTTTCGTCGGTTGG
579 ATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCT-CGCCCGCTCGTTTCGTCGGTTGG
* * ** *
19254784 CATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATTA-AGGGTTGCGACAGCAGGA
642 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGA
** * * * * * *
19254848 TCGGTAGTAC-TCAGAGGTGGACCCAGTA--GATCCCCGGCTTGCGTATCCCACCCCTATGCCCG
707 TCGACAGCACGT-AGAGGGGGACCC-G-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
19254910 GCTAAGCGCTCGTACACTCGTTTCGTGGGTTGACTTAGGCATACAGCGTTCATTCCCAGTCTAAG
769 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
19254975 CATACAGAGTTCATTCCCAGTC-----T------------A--------G--G--C-T--T--G-
834 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
19255005 --G-
899 TCGA
* ** *
19255006 GCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * *
19255071 ATCGGCGGCATTGGGGTTTCGACGATCGGGGGAGCCGGGGGGTGTGCCCACATGATGTGCGATGG
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
19255136 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19255201 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19255266 ACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTTGCTGAATTGTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * **
19255331 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCC-AAAATTTTTTT
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTT
* * ** * *
19255395 AAAAAAACTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
388 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
19255460 GAAACTTGACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATGGCATTGG
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGG
* * *
19255524 CATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATC
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19255589 CCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCACT----CG-T--TTT-GTCGGTTGGCTTAG
582 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * ** *
19255646 GCATATGGACTTCATTCCCAATCTAAGATCAGACTGGATC-GAGGGTTGCAACAGCAGGATCGAG
647 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
19255710 AGCACGTAGTGGGGGTCCCG-CTCGATCCCCTGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGC
712 AGCACGTAGAGGGGGACCCGAC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19255774 GCCCTCATGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
776 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
19255839 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATACCGGGCTC-A
841 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
** * * *
19255900 GGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATTGCCGGAGCTTCACCGAAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* * * * * *
19255965 GACCGGCAGAATTGAGGTTCCGGCGATCGGGGGGTCTGGGGGTGTGCGCACATGATGTGCGATGG
64 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19256030 GTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCCCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
19256095 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19256160 ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19256225 CC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAATA-TCCTTCTGAAAAAATTTT
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCGAAAAAATTTT
* * ** * * *
19256288 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTTGTCTTGCCAT
388 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19256353 GAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19256418 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGCGATCCACGGCTTGCGCATCC
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * ** * * *
19256483 TGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCTACTCATTTCATCAGTTGGCTTAGG
583 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
19256548 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACC-GAGGGTTATGGTAGCAGGATCGGCA
648 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGACA
** * ** * * *
19256612 GCACACAGAGGGGGATCCGACCGATCCCCAACTTGCGCATCCCGCTCCTTTGGCCGGCAGA-CTG
713 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-G
*** * * *
19256676 CCCGCACGCTCGTTTTACGGGTTAACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGG
777 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** *
19256741 GTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGATAGGACATGCTGGGCTC-A
842 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * **
19256801 GGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* * * ** *
19256866 GATCGGCGGCATTGGGTTTCTGGTGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGAT
64 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGAT
** *
19256931 GGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19256996 CCTTAAA-AGGAATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
192 CCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19257060 GACACTTTTTTCAAATGGCCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
256 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19257125 ATGCCAAAAAAAATACAAGGATCACG--T--C---TTT-AGGTCAAAACTCCTTCCGAAAAAATT
321 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
19257182 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
386 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
19257247 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
451 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
19257312 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
516 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19257377 CCCGTCTCTCTGGCC-AGCGTAGTACCCGCCCGTCCGGTCGCCCGCTCGTTTCGTCGGTTGGCTG
581 CCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** **
19257441 AGGCATACAGACTTCATTCCCAGTCTAAGATCAGATCGGA-TTGAGGGTTGCAACAGCAGGATCG
645 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCG
* * * * *
19257505 AGAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTAAG
710 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** *
19257570 CGCCCTAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG
775 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * ** *
19257635 GAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGAGGTAGCACATGCCAGGCTCGG
840 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * *
19257698 GCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGCCACCTTTGCCGGAGCATCACCGAAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * ** * *
19257763 ACCGACGGCATTAGGGTTCTGGTGATCAGGGTGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * **
19257828 GTGCTCGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
19257893 TTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19257958 ACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCTT
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* *
19258023 GCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
323 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * * *
19258088 AAAAAATCCCAAATCGCAAAACA-TTTCGAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCA
388 AAAAAATCCCGAACCGTAAAA-AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
19258152 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * **
19258217 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGT-GATTCACACCTTGCGCAT
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCAT
* * * * * **
19258281 CCCGTCTCTCTAGCCGACGTAGTACTCGCCCGCCCGCCCGCCTGCTCGTTTCGTTAGTTGGCTTA
581 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * * *
19258346 GGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCA-AGGGTTACAGCAGTAGGATCGA
646 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGA
* * * ** * *
19258410 CAGCACGTAGAGGGGGACCCGACTGATCCCTGACTTGCGTGTCCTGCCCCTCTAGCCGGCTGAGC
711 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
19258475 GCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA
776 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * **
19258540 AGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTGCGATAGCACATGCTGGGCTC-A
841 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * *
19258601 GGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATCATCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* ** *
19258666 GACCGACGGCATTGGGGTTCCGGTGATCGGGGGGACCAGGGGGTGTGCGCACATGATGTGCGATG
64 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATG
19258731 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
128 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19258796 TTTGAAAG-GAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
193 CTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19258860 ACACTTTTTTCAAATGGCCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19258925 TGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAAAAAATTT
322 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
19258989 TAAAAAATCTCGAACCGCAAAAAGTTTTGCAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
387 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19259054 TGAAACTTCAAGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATGAAAATGGCATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19259119 CATGCAGACATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATT
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
19259184 CTGTCTCGCTGG-CTAGCATAGTGCCCGTCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
582 CCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
19259248 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTACGGCAACAGGATCGG
646 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGA
* * * * *
19259312 CAGTACATAGAGGGGGACCC-ATCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAA
711 CAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * *
19259376 CACCCGCATGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATATG
775 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
19259441 GAGTTCATTCCCTGTCTAAGATCGAACCGGACCAAGGGTTACGGTAGCAGGAT-C-GGTTGCACG
840 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CATGCTGG--GCTCG
19259504 CAAA
902 ---A
* ** * * * * * * *
19259508 GGA-G-GACCCGTCCGATCCCCGACTTGTGCATC-T--CGC-CCCTCTGGCCGGCTGAGC-GC-C
1 GCATGTG-CTGGT--G--CCGC-A-TTTTTCTTCGTGGGGCACCATC--GCC-G--GAGCATCAC
* ** *** * * * ** *
19259565 CGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGA
54 CGGA-GAACC--T-GACCG--G-C---GGCAT-TGG-G---GTT-CC-G---ACG-AT-CGGGGG
* ** * * ** * * * *** * * *
19259630 ACCTGACCGACGGTATTAGGGTTC-TGGTGAT-C-A-GGGGGCCGGGGGGTGTGTGCACATGATG
97 GCC-G---GGGGGT-GT-GCGCACATGATG-TGCGATGGGTG-CTGGTACT-TG-GC-CCTTATA
*** * * * *** * ** * * * * * * *
19259691 TGCGATGG-GTGCTGGTACTTGGCCATTATATTG-G--CCCCCTATCCCTCATCAA-A-CCTTGA
151 T----TGGCCCCCT-ATCCCTCATCA-AACCTCGAGAACTCAC-A-CCCCCTTAAAGAGCATT--
*
19259750 GAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
206 -T-------------------------GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19259815 TCTAAAATGGGGACACTTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGA
245 TCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
19259880 ATTTTTTTGTGCATGCCGACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCT
309 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * ** *
19259945 GCC-AAAAAATTTTTAAAAAATCCCAAACTATAAAAAGTTTCT-AAAATCGTGAAAAAGAGAAAA
374 TCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAA
* *
19260008 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCA
437 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
19260073 TAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
502 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * **
19260138 CATGGTTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCCGTAGCCCTG-TC-TTCGCTC
567 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC---GCCC-GCTCGCCCGCTC
* * * *
19260201 GTTTCGTC-GTT-GCTTAGGCATACGGAATTCATT-CCAGTCTAAGATCA-AACTGATC-GAGGG
628 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGG
** * * * * * *
19260261 TT-ATGCAACA-G-T-G--AGCAACATAGAGGGGTA--C--CCGATCCTTCAGC-AGCGCATCCC
693 TTGCGGCAGCAGGATCGACAGC-ACGTAGAGGGGGACCCGACCGATCC-CCGGCTTGCGCATCCC
*** * *
19260315 -ATGCTCTGGCCGCCTGTAGCGCCC-TACGCTCGTTTCGT-GGTTGACTTAGGCATA-GGA-TT-
756 GCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
19260374 ATT-CC-GTCTAAGCATA-GGAAGTTCATT-CCA-TCTAAGAT-GGACCCCGACCGAGGG-T--G
820 ATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCG
*
19260430 GCGGCAC---CTGGG-TC--
883 GCAGCACATGCTGGGCTCGA
* ** *
19260444 GCATGTGC-GGTGCCACA--TAACTTCGATGGGG--CC--CGCCGGAGCATCA-C-GAGAA-TTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* *
19260499 ACC-GCGACATT--GGTTCCGACGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTTCGAT-
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATG
* * *
19260560 GGTGCTGTTACTTTGGCCCTTATATTGGCCACCTATCCCTCATC-AACCTCGAGAACTCATA-CC
128 GGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19260623 CCTTAAAGAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCTATTAAAGTGTCTAAAATAGG
192 CCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* **
19260688 GACACTTTTTTTCAAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAC
256 GACAC-TTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
19260753 GCATGCCGACAAAAATACAAGGTTCACGTCTGCCAAGTTTGCGGCCAAAAATCCTTCCGAAAAAA
319 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* **
19260818 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCT-AAAATCGTGAAAAATAGAAAATAAGTCGTCTT
384 TTTTAAAAAATCCCGAACCGTAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
19260882 GCCAATGAAACTTCACGTGAAGGCCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAA-GG
448 GCC-ATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
19260946 CATTGGCACACAGAAATATGAAGATGGTGCCTAAAACGC-CCTACGCACCCTATCGATCCACCGG
511 CATTGGCATGCAGAAATATGAAGAT-GTGCCT-AAACCCACCTAC-CACCCTATCGATCCA-CGG
* * * * * * *
19261010 CTTGCGCAT-CCGT-TTTTTGGCCGACGTAGTGCCCACCTGCCCGCCCAGCCCGCTCATTTCATC
572 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC-GCCCGCTCGTTTCGTC
* * ** * **
19261073 GGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCAAAGATCAGATTGAACCA-AGGGTTGTAGCA
636 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCA
** * ** * * * * *
19261137 ATAGGATCGGCAGCACACAGAGGGGTACCGGATCGATCCCCGGCTTGTGCAT-----CCCTCTAG
701 GCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
19261197 CCGGCTGAGCGCCTGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTC-TT-----TC-
766 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* **
19261255 ---C---C--AG-----T----G--TATGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTG
831 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
19261301 GGCTC-A
896 GGCTCGA
** ** * * **
19261307 GGCATGTGCTGGTGCCATATTTTTCTTCACCGAGGCACCATCACCGGAGTGTCACCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTC-GTGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* *
19261372 GACCTGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAT
64 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGAT
19261437 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTCGAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
19261501 CGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAATGTCTAAAATGGTG
192 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19261566 AC-TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TAGC
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GC
* *
19261629 ATGCCAAAAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
321 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** ** * * *
19261694 TTAAAAAATTCTGAATAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTACC
386 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
19261759 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
451 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
19261824 GCATGCAAAAATATGAAGATGTGCCTAAGCCCAGCTATCACCCTATCGATCCACGGCTTGCGCAT
516 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
19261889 CCCGTCTCTCTGGCCTG-CGTAATGCCCGCCCGCCCG-TCGGCCCGCTCATTTCGTCGGGTGGCT
581 CCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCTC-GCCCGCTCGTTTCGTCGGTTGGCT
* ** ** *
19261952 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCA-AGGGTTATGGCAGCAGAATC
644 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATC
* ** * ** * * * * *
19262016 GGCAGCACACAGAAGGGGACCCGGTCGATCCCCGGCTTACACATCCCACCCTTCTGTCCGGCTGA
709 GACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
19262081 CCGCCCGCACACTCATTTCGTTGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATAC
774 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19262146 AGAGTTCATTCCCAGTCTAAGATC-GATTCAGACCGAGGGTTGCGGCAGCACTTACTGGGCTCGG
839 GGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * ** * * *
19262210 GCATGGGCCGGTGTCGCATTTTT-TTCACCGGGACACCATCGTCGGAGCATCATCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTC-GTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * *
19262274 ACCTGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGTGATGG
65 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * * ** * * *
19262339 GTACTGGTACTTGGCCCGTATAATATCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCT
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19262404 TTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * *
19262469 AATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTTTACATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * * * **
19262534 CCAGCAAAAATACAAGGATCATGTCTACCTAGTTTAGGGCCAAAATTCCTTTTGAAAAAATTTTA
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** ** * * *
19262599 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGGGTCATCTTGCCATG
389 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19262664 AAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** * *
19262729 TGTAGAAATATGAAGATGTGCCTAAACGTACCTACCATCCTATCGATCCACGGCTTGCACATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19262794 GTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG-T----CGCTCTTTTCGTCGGTTGGCTTAGGC
584 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
19262854 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTACGGCAGCAGAATCAACAA
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * *
19262918 CACATAGA-GGGGTCCTGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACC
714 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
19262982 CGCACGCTCGTTTCATGGGTTAACTTAGGTATAC-GAGTTCATTCCAAGTCTAGGCATACGGAGT
779 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
19263046 TCATTCCCAGTCTAAGATTGGACC-AACCAAGGGTTGGGGCAGCACATGCTGGGCTTGG
844 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * *
19263104 GCATGTGCTGGTGCCACATTTTTCTTCGTTGGGCACCATCTCCAGAGCATCTCCGGAGAACCTGA
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * * *
19263169 CCGACGGCATTGGGGTTCCGGCGATCGGGGGCGGCCGGGGGGTGTACGCACATGATGTGTGATGG
66 CCGGCGGCATTGGGGTTCCGACGATC-GGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
19263234 GTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACTTCGAGAACTCACACCCCT
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * *
19263299 TTTAAGAGCATTTGAGATTTAACAGGTGTGCTGCCAGTAGCAATTAAAGCGTCTAAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19263364 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * **
19263429 CCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCTAAAAAAATTTTA
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
19263494 AAAAATCCCGAATCGTAAAAAGTTTCGAAAATGGTGAAAAATAGAAAAGGAGTCGTCTTGCCATG
389 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
19263559 AAACTTCAGGTGAAGGCTTAAGGG-CAATTGTATGAATTTACAA-CCATAAAAATGGCATTGGTA
454 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19263622 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC
519 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
19263687 GTCTCTCTGGTCGACGTAGTGTCCGCTCGCCCACCCGCCCGCTCGTTTCGTTGGTTAGCTTAGGC
584 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * ** * *
19263752 ATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCA-AGGGTTATGGCATCAGGATCAACAG
649 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAG
** * ** * * * * *
19263816 CACACAGAGAGGGACCCGGTCGATCCCCGACATACGCATCCCGCCCCTCTGGTCGGTTGAGCGCC
714 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
19263881 CGCATGCTCATTTCGTGGGTTGACTTAGGCTTACGAAATTCATTCCCAGTCTAAGCATACGGAGT
779 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
19263946 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCTGCACATGCTAGGCTCGA
844 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* *
19264005 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * * * * *
19264070 ATCAGCGACATTGGTGCTCCAACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGG
65 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19264135 GTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTTATCAAACCTCGAGAACTCATACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19264200 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTGTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
19264265 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * * *
19264330 CCAACAAAAAATACAGGGATTATGTCTATCAAGTTTGGGGCCAAAAATTCTTCCGAAAAATTTTT
324 CCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** *
19264395 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAGAACGAGTTGTCTTGCCA
388 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA-AACGAGTCGTCTTGCCA
* * **
19264459 TGAAACTTCTCGTGAAGGCGTAAGGGACC-------G---TTACAAGCCATAAAAATTACATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19264514 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCGCATC
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
19264579 CCGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCG-T---CCGCTCG-TT--TCGGTTGGCTTAG
582 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
19264637 GCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGGATCA-AGGGTTGCGGCAGCAGGATCGGC
647 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
19264701 AGGACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAGCCCGCCCCTCTGGTCAGCTGAGCG
712 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19264766 CCTGCACGCTCG-TTCG-GGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGA
777 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
19264829 GTTCATT-CCAGTCTAAG
842 GTTCATTCCCAGTCTAAG
19264846 CATACAGAGT
Statistics
Matches: 11405, Mismatches: 1577, Indels: 877
0.82 0.11 0.06
Matches are distributed among these distances:
855 16 0.00
856 5 0.00
857 184 0.02
858 11 0.00
859 1 0.00
860 1 0.00
861 8 0.00
862 67 0.01
863 167 0.01
864 514 0.05
865 190 0.02
866 46 0.00
867 31 0.00
868 9 0.00
869 8 0.00
870 13 0.00
871 148 0.01
872 76 0.01
873 88 0.01
874 185 0.02
875 17 0.00
876 68 0.01
877 141 0.01
878 28 0.00
882 3 0.00
884 11 0.00
885 51 0.00
886 7 0.00
887 138 0.01
888 1 0.00
889 12 0.00
890 14 0.00
891 3 0.00
892 5 0.00
893 382 0.03
894 453 0.04
895 689 0.06
896 770 0.07
897 230 0.02
898 245 0.02
899 191 0.02
900 464 0.04
901 787 0.07
902 1226 0.11
903 747 0.07
904 846 0.07
905 574 0.05
906 173 0.02
907 176 0.02
908 192 0.02
909 200 0.02
910 22 0.00
911 9 0.00
912 21 0.00
913 2 0.00
914 1 0.00
915 2 0.00
916 3 0.00
918 6 0.00
919 15 0.00
920 5 0.00
921 20 0.00
922 6 0.00
923 1 0.00
924 7 0.00
925 4 0.00
926 2 0.00
927 3 0.00
928 3 0.00
929 2 0.00
930 5 0.00
931 6 0.00
932 4 0.00
933 4 0.00
934 10 0.00
935 8 0.00
936 10 0.00
937 7 0.00
938 1 0.00
939 5 0.00
940 5 0.00
941 14 0.00
942 4 0.00
943 1 0.00
944 2 0.00
946 5 0.00
948 3 0.00
949 18 0.00
950 4 0.00
951 18 0.00
952 2 0.00
953 3 0.00
954 2 0.00
955 3 0.00
956 16 0.00
957 20 0.00
958 21 0.00
959 3 0.00
960 1 0.00
961 2 0.00
962 12 0.00
963 1 0.00
964 1 0.00
965 1 0.00
966 6 0.00
967 65 0.01
968 115 0.01
969 228 0.02
970 5 0.00
971 13 0.00
972 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATGTGCTGGTGCCGCATTTTTCTTCGTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAGAGGGTTGCGGCAGCAGGATCGACAGCA
CGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
Found at i:19254977 original size:26 final size:26
Alignment explanation
Indices: 19254948--19254998 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19254938 GTTGACTTAG
*
19254948 GCATACAGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19254974 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
19254999 GGCTTGGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19255841 original size:26 final size:26
Alignment explanation
Indices: 19255805--19255857 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19255795 GTTGACTTAG
19255805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19255831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19255857 G
1 G
19255858 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19256744 original size:26 final size:26
Alignment explanation
Indices: 19256706--19256758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19256696 GTTAACTTAG
*
19256706 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19256732 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19256758 G
1 G
19256759 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19257638 original size:26 final size:26
Alignment explanation
Indices: 19257602--19257654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19257592 GTTGACTTAG
*
19257602 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19257628 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19257654 G
1 G
19257655 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19258536 original size:26 final size:26
Alignment explanation
Indices: 19258506--19258558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19258496 GTTGACTTAG
* *
19258506 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19258532 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19258558 G
1 G
19258559 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19259460 original size:26 final size:26
Alignment explanation
Indices: 19259408--19259460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19259398 GTTGACTTAG
*
19259408 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19259434 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19259460 G
1 G
19259461 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19259586 original size:185 final size:185
Alignment explanation
Indices: 19259256--19259623 Score: 495
Period size: 185 Copynumber: 2.0 Consensus size: 185
19259246 TAGGCATACA
* * *
19259256 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGGCAGTACATA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAACAGGATCGGCAGCACACA
* * * * *
19259321 GAGGGGGACCCATCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAACACCCGCATG
66 AAGGAGGACCCATCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACG
* *
19259386 TTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATATG
131 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * ** *
19259441 GAGTTCATTCCCTGTCTAAGATC-GAACCGGACCAAGGGTTACGGTAGCAGGATCGGTTGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTACGGCAACAGGATCGGCAGCACAC
* * * * * *
19259505 AAAGGAGGACCCGTCCGATCCCCGACTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
65 AAAGGAGGACCCATCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCAC
* *
19259570 GCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
130 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
19259624 CGAAGAACCT
Statistics
Matches: 157, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 1 0.01
185 156 0.99
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (185 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAACAGGATCGGCAGCACACA
AAGGAGGACCCATCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACG
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
Found at i:19261734 original size:26 final size:26
Alignment explanation
Indices: 19261687--19261743 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
19261677 CTCCTTCCGA
* * *
19261687 AAAAATTTTAAAAAATTCTGAATAGT
1 AAAAAGTTTAAAAAATTCTGAAAAAT
*
19261713 AAAAAGTTTCAAAAA-TCATGAAAAAT
1 AAAAAGTTTAAAAAATTC-TGAAAAAT
19261739 AAAAA
1 AAAAA
19261744 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATTCTGAAAAAT
Found at i:19263040 original size:25 final size:26
Alignment explanation
Indices: 19263007--19263059 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19262997 TGGGTTAACT
*
19263007 TAGGTATAC-GAGTTCATTCCAAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
*
19263032 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
19263058 TA
1 TA
19263060 AGATTGGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCAAGTC
Found at i:19264847 original size:25 final size:25
Alignment explanation
Indices: 19264794--19264871 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
19264784 GTTGACTTAG
*
19264794 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
19264820 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
*
19264845 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
19264871 G
1 G
19264872 ATTTGACGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 23 0.47
26 26 0.53
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:19265320 original size:26 final size:26
Alignment explanation
Indices: 19265291--19265343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19265281 GTTGACCTAG
19265291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19265317 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19265343 G
1 G
19265344 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19266938 original size:26 final size:26
Alignment explanation
Indices: 19266908--19266960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19266898 GTTAACCTAG
19266908 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19266934 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19266960 G
1 G
19266961 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19267779 original size:901 final size:899
Alignment explanation
Indices: 19266033--19269205 Score: 4043
Period size: 901 Copynumber: 3.5 Consensus size: 899
19266023 GTTGGCTTAG
** * * *
19266033 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATTGAGGGTTGCGGCAGTAAATCCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
19266097 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCCACCATCATCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGG-CACCATCACCGGAGCATCGCCGAA
** * *
19266162 GAACCTGACCGACAGCATTGGGGTTCCAACGATCGGGGGGCCAGAGGGGCGCGTTCGCAACATGA
129 GAACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGCC-GAGGGG-GTGTGCGC-ACATGA
* *
19266227 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATC-AACCTCGAGAAC
191 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
19266291 TCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTG
*
19266356 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATT
321 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** *
19266421 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGGCAAAACTCCTTCTGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAAAGCCTTCCGA
*
19266486 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19266551 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
19266616 GGCATTGGCACGTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19266680 TGCACAACCCGTCTCTCTGGCC-AGCATAGTG--CCCG-C-CCCCCCACCCGCTCGTTTCATTGG
645 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCCCGCCGCCCCCCGCCCGCTCG-TTCGTCGG
* * ** *
19266740 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATTGGACCAAGGGTTGCCGTAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATAAGGGTTGCGGTAGCA
* * * * *
19266805 GGATCGATAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCG
773 GGATCGGTAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGC-CATCCCG-CCCTCTGGCCG
** * * * * *
19266870 AATGAGCGCCCGTACGCTCATTTCATGGGTTAACCTAGGCATACAGAGTTCATTCCCAGTCTAA
836 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19266934 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTGGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19266999 CTCGGGCATGTGCTGGT-ACAGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATTGTCGAAG
66 CTCGGGCATGTGCTGGTGCCA-TATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGAAG
* ** * * * * *
19267063 AACCTGACTGACAAAATTGGGGGTTTCGGTGATTGGGGGGCC-AGGGTGTGTGCGCACAAGATGT
130 AACCTGACCGACAGCATT-GGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGT
*
19267127 ACGATGGGTGGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCATC-AACCTCGAG-ACT
194 ACGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACT
* * *
19267190 CACACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTG
257 CACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTG
** * * *
19267255 GTATGGGGACACCTTTTT-AAATTGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * *
19267319 TTTTTTGCATG-CAAC-AAAA-CCAAGGATCACGTCTACCTAGTTTGGGCCAAAACA-CCTTCCA
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAA-AGCCTTCCG
* * ** * *
19267380 AAAAAATTTGAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATC-TGAAGAATAAAAAAACGAGT
449 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGT
* * *
19267444 GTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-AGACCATTGTATGAATTTACAAACCAT-AA
513 -CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
19267507 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA-CACACCTATCGATCCAC
577 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCAC
* *
19267571 GGCTTGCGCATCCCATCTCT-TGACCGACGTAGTGCCCACCCGCCGCCCGCCCGCCCGCTCGTTA
641 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCGCCC-CCCGCCCGCTCGTT-
* ** * *
19267635 CGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCCAGTTTAAGATCAGACTGGAATAAGGGCTGCG
702 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATAAGGGTTGCG
*
19267700 GTAGCAGGATCGGTAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCACATCCCGCCCTTT
767 GTAGCAGGATCGGTAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGC-CATCCCGCCC-TC
* * *
19267765 TGGCCGGCTGAGCGCCCGCACGCTCTTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAG
830 TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
19267830 TCTAA
895 TCTAA
* * ** * *
19267835 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
*** * * * * *
19267900 CTCACACATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * ** * * * * *
19267965 ACCTGA-CTAGCGGCATTAAGGTTCCGGCGGTCAAGGGGGTCTG-GGGGATGTGCGCTCATGATG
131 ACCTGACCGA-CAGCATTGGGGTTCCGGCGATC--GGGGGGCCGAGGGGGTGTGCGCACATGATG
* *
19268028 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACCC
193 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19268093 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
19268158 ATGGGAACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGACTGTTTT
323 ATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19268223 TGTGCAAGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAAAGCCTTCCGAAA
*
19268288 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19268353 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19268418 CATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CATGGCTTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19268482 CGCATCCCGTCTCTCTGGCTGGGGCGTAGTGCCCGC-CCGCCCACCCGCCCGCTCATTCGTCAGT
647 CGCATCCCGTCTCTCTGGC--CGACGTAGTGCCCCCGCCGCCC-CCCGCCCGCTCGTTCGTCGGT
* * *
19268546 TGGCTTAGGCATATGGAGTTCA-T-CCAGTGT-AGATC-GAC-CGAACCTAAGGGTTGCGGGCAA
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAA--TAAGGGTTGC-GG---
* * * * *
19268606 ATGGCAGGATCGGACAACACACAGAGGGGGACCCAGCCGATCCCCAGCTTGCGATCCCGTCCCTC
768 -TAGCAGGATCGG-TAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCCATCCCG-CCCTC
* *
19268671 TGGACTGGCTGAGGCGCCCGCACGCTCATTTCGTGGG-TGACTTAGG-ATACGGAGTTGATTCCC
830 TGG-CCGGCTGA-GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
19268734 AGTCTAA
893 AGTCTAA
* * *
19268741 GCATATGGAGTTCATTCCCAGCCT-AGATCAGGACTTGACCGAGGG-TGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
19268804 GCTCGGGGCATGTGCTCGG-GCCCATA--TTTCTTCACCGGGGGCACCATCGCCGGAGCATCGCC
65 GCTC-GGGCATGTGCT-GGTG-CCATATTTTTCTTCGCC-GGGGCACCATCACCGGAGCATCGCC
* *
19268866 -AGAGAACCTGACCGACAGCATTGGGGTTCC-GCGATCGGGGTGGCCGGCGGGGGTGTGCGCAGA
126 GA-AGAACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGG-GGCC-GAGGGGGTGTGCGCACA
* * *
19268929 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-AA
188 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGA
* * *
19268993 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAATG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTG
* * *
19269058 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAA
317 TCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
19269123 CTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAAGCCTT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAAGCCTT
19269188 CCGAAAAAATTTTAAAAA
446 CCGAAAAAATTTTAAAAA
19269206 TTTGAACACA
Statistics
Matches: 1960, Mismatches: 247, Indels: 125
0.84 0.11 0.05
Matches are distributed among these distances:
894 39 0.02
895 144 0.07
896 55 0.03
897 20 0.01
898 116 0.06
899 83 0.04
900 63 0.03
901 518 0.26
902 111 0.06
903 9 0.00
904 79 0.04
905 167 0.09
906 457 0.23
907 69 0.04
908 30 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGAAGA
ACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAAGCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCGCCCCCCGCCCGCTCGTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATAAGGGTTGCGGTAGCAGGATCGGT
AGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCCATCCCGCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19267847 original size:26 final size:26
Alignment explanation
Indices: 19267809--19267861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19267799 GTTGACTTAG
*
19267809 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19267835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19267861 G
1 G
19267862 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19272707 original size:26 final size:26
Alignment explanation
Indices: 19272677--19272729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19272667 GTTGACTTAG
19272677 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
19272703 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
19272729 G
1 G
19272730 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:19272821 original size:899 final size:898
Alignment explanation
Indices: 19271033--19274671 Score: 4519
Period size: 890 Copynumber: 4.1 Consensus size: 898
19271023 TCGTGGGTTG
* * * * *
19271033 ACCTGACTGGCAGCATTGAGGTTCCGCCGATCGGGGGGGCCGGGGGGCTGTGCGCACATGATGTG
1 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
19271098 CGATGGGTGGC-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
65 CGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19271162 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
129 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19271227 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
194 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * ** *
19271292 GTGCATGACAAAAAAAAAATATGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAA
259 GTGCTTG-C-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAA
* ** * *
19271357 AAAATTTTAAAAAATTTCT-AACAACAAAAAGTTTCGAAAATCGTCAAAAATAGAAAACGAGTCG
322 AAAATTTTAAAAAA-TCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
19271421 TCTTGCCATGAAACTTCACATGAAGCCCTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
386 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19271486 GGCATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACAACCCTATCGATCCACGGCT
451 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** *
19271551 TGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGGCCGTCCGCTCGTTTTGTCGGTTGGC
516 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGC
* * * *
19271616 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-GTCAGACCGGACCGAGAGTTACGGTAGC-AGTA
581 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCGGA-TGAGGGTTACGGTAGCAAG-A
* * * * * *
19271679 TCAGTAGCACGTAGAGGGGGACCTGATCGATCCTCGACTTGTGCATCCCGCCCTTCTGGCCGACT
643 TCGGCAGCACATAGA-GGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACT
* ** * * *
19271744 GAGCGCTCGCACGCTCCATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCGT
707 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
** * * *
19271809 ATGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGCAAATGCTGGGCTCG
772 ATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
19271874 GGCATGTGCTGCTGCCGCATTTTTCTTC-ATCGGGGCACCATC-CCAGAGCATCGTCGGAGA
837 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* *
19271934 ACCTGACCGGCGGCATTGGGGTTCTGGCCATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
1 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTG
* * * *
19271999 CGGTGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19272064 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19272129 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTCTG
195 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19272194 TGCCTGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGCCCAAAACACTTTCCAAAAAA
260 TGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAA
* * * * ** * *
19272259 ATTCTAAAAAATCTTGAGCCTCTAAAAGTTTTGAAAATTGTGAAAAAAAGAAAACGAGTCGTCTT
325 ATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19272324 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
390 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
19272389 TTGGCTTGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTTG
455 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19272454 CATCCCCTGTCTCTGGCCGGCGTAATGCCCGCTCGCCCACCCGCTCGTTTCATC-GTTGGCTTAG
520 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
19272518 GCATACGGAGTTAATTCCCAGTCTAAGATTGAACTGGACTGAGGGCTGCGGCAGCAAGATCGGTA
585 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGA-TGAGGGTTACGGTAGCAAGATCGGCA
* * * * *
19272583 GTACATAGAGTGGGACCCGATCGATCC-CTGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCG
649 GCACATAGAG-GGGACCCGATCGATCCTC-GACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
*
19272647 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATATGGA
712 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGA
* * *
19272712 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCAT
777 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
19272777 GTGCTGGTGCCGCATTTTTGTTCGCT-GGGGCACCATCGCCAGAGCATCGTCGGAGA
842 GTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * * *
19272833 ACCTGACTGACGGCATTGGGGTTCCGGCGAT--------CGGGGGGGTGTACGCACGTGATGTGC
1 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
19272890 GTTGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
66 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19272955 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCAATTAAAGTGTCTGAAATG
131 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19273020 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTTAATTTTTTTGT
196 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19273085 GCTTGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAA
261 GCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAA
*
19273150 TTTTAAAAAATCCCT-AACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
326 TTTTAAAAAAT-CCTGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
19273213 TGCCATGAGACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
389 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19273278 ATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
454 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19273343 GCATCCCGTCTCTCTAGTCGGAGTAGTGCCTGCTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGG
519 GCATCCCGTCTCTCTAGCCGGCGTAGTG-C--C-CGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * * *
19273408 CTTAGGCCTACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGTGGGTTACGGTAGTAGGAT
580 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGAT-GAGGGTTACGGTAGCAAGAT
** * * * *
19273473 CGGCAGCACGCAGAGAGGGACCCGGTCGATCC-CCAGCTTGTGCATCCCGCCCCTCTGGCCGGCT
644 CGGCAGCACATAGAG-GGGACCCGATCGATCCTCGA-CTTGCGCATCCCGCCCCTCTGGCCGACT
19273537 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-G-G---------AG--T-----T
707 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
*
19273584 -T--AG-----TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTG
772 ATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
19273641 GGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATC-ACTGGAGA
837 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCATCGCCAGAGCATCGTC-GGAGA
* * * *
19273702 ACCTGACCGGCTGCATTGGGGTTCCGACGATCGAGGGTGCCAGGGGGGCTGTGC-CAACATGATG
1 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGGTGTGCGC-ACATGATG
* * * * *
19273766 TGTGATTGGTTCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
63 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19273831 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCGAGTAGCCATTAAAGTGTATGAA
128 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19273896 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTG
193 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** ** * *
19273961 TGTGCATTACGAA-AAAAATACAAGGATCACAACCGCCAAGTTTGGGGCCAAAA-ATCCTTCCTA
258 TGTGC-TTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACA-CCTTCCGA
* * * * *
19274024 AAAAATTTTAAAAAATCCCGAA-CGCAAAAAGTTTAAAAAATTGTGAAAAATTA-AAAATGAGTC
321 AAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTC
* * *
19274087 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATATACAAGCCATAAAAA
385 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
19274152 TGGCATTCGCACGCAGAAAAATGAAGATATGCCTAAACCCACCTACCGCCCTATCGATCCATGGC
450 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
19274217 TTACGCATCCCGTCTCTCTAGTCTGCGTAGTGCCCGCCCACCCGCCCGTCTGCTAGTTTCGTCGG
515 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACCCG-CT-C--GTTTCGTCGG
* ** * *
19274282 TTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATGAAAGGTTGCGGTAGCA
576 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATG-AGGGTTACGGTAGCA
* * * * * * *
19274347 GGATTGGCAGCACGCATAG-GGGGACACGGTTGATCCTCGACTTTCGCATCCCGTCCCTCTGGCC
640 AGATCGGCAGCA--CATAGAGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCC
* * * * *
19274411 GACTGAGCGCCGGCACGCTCATTTCATGGGTTGACTTAGGCGTACAGAGTTTATTCCTAGTCTAA
703 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
19274476 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTGTGGCAACACATGCTGGG
768 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
19274541 CTCAGGCATATGCTGGTGTCGCATTTTTCTTCAC-CGAGGCATCATTGCCGGAGCATCGTTGGAG
833 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCATCGCCAGAGCATCGTCGGAG
19274605 A
898 A
* * * * *
19274606 ACCTGATCGGTGGCATTGGGGTTCCGAG-GATTGGGGGGGCCAGAGGGGGTGTACGCACATGATG
1 ACCTGACCGGCGGCATTGGGGTTCCG-GCGA-TCGGGGGGCC-GGGGGGGTGTGCGCACATGATG
19274670 TG
63 TG
19274672 AAAACTCCTT
Statistics
Matches: 2374, Mismatches: 289, Indels: 147
0.84 0.10 0.05
Matches are distributed among these distances:
868 2 0.00
869 129 0.05
874 16 0.01
875 3 0.00
876 2 0.00
877 3 0.00
878 334 0.14
879 264 0.11
880 9 0.00
882 1 0.00
884 2 0.00
889 2 0.00
890 457 0.19
891 6 0.00
893 2 0.00
894 23 0.01
895 149 0.06
896 1 0.00
897 2 0.00
898 259 0.11
899 311 0.13
900 11 0.00
901 236 0.10
904 147 0.06
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATGAGGGTTACGGTAGCAAGATCGGCAGC
ACATAGAGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGCTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
Found at i:19277770 original size:26 final size:26
Alignment explanation
Indices: 19277741--19277793 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19277731 GTTGACTTAG
*
19277741 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19277767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19277793 G
1 G
19277794 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19278681 original size:26 final size:26
Alignment explanation
Indices: 19278645--19278697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19278635 GTTGACTTAG
*
19278645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19278671 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19278697 G
1 G
19278698 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19278728 original size:904 final size:900
Alignment explanation
Indices: 19275113--19282753 Score: 9721
Period size: 904 Copynumber: 8.5 Consensus size: 900
19275103 GTTAACTTAG
* * *
19275113 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * **
19275178 TTCGGGCATGTGCTGATGCCGTATTTTTCTTCGTCGGGGCACCAACGTCGGAGCATTAAT-GGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA-TCGTCGGAG
* * * * *
19275242 AACTTGACTGACGGCATTGGGGTTCCGATGATC----GG-C------AT-TG-GCAGATGATGTG
130 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * *
19275294 CGATGTGTGCTGGTAGTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTCGGGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19275359 ACGCCCTAAAAGAGTATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19275424 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTTAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19275489 TGCATACCAACAAAAATACAAGGGTCACGTCTACCAAGTTTGGGCCAAAACTCCTTTCGAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAA
* *
19275554 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19275619 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19275684 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTATCACCCTATCGATCCACGGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19275749 TTCCCATCTCTCTGGCC-AGCGTAGT----GCCCGCCTGCCCGCCCGCTTGTTTCGTCAGTTGGC
649 ATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
19275809 TAAGGCATACGGAGTTCATTCCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCGGGAT
713 TTAGGCATATGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGAT
* ** ** * *
19275874 CGGTAG-ATCATAGAGTGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTT
777 CGGCAGCA-CGCAGAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
19275938 GAGTGCCCGCAAGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCA-T-----TC---
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19275990 -C---C--A----A-----A--CTAAGATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
19276038 CTCTGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAAGCATCGCCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG-GAGCATCGTCGGAG
* * *
19276103 AACCTGATCGGCCGCATTGGGGTTCCGACGATCGGGGGTG-CGGGGGGGCGTGCGCACATGATGT
130 AACCTGA-CCGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGT
* *
19276167 G-AGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTC
193 GCA-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * * *
19276231 ACACCCCCTTCAAGAGCATTTGAGATTTTACAAGTTTTCTGCCAGTAGTCGTTAAAGTGTTTTAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
19276296 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19276361 TGTGCAAGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAA-TCCTTTCTGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCC-TTCCGAA
** **
19276425 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19276490 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19276555 GCATTGGTATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19276620 GTGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCCGCCCGCTCATTTTGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
19276681 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCAAGGGTTACAGCAGCAG
710 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCAGCAGCAG
* * ** ** * * ** * *
19276745 GATTGGTAGCATACAGAGTGGGACCCGGTTGATCCTCAGCTTAAGCATCCTGCCCCTCTTGCCGG
774 GATCGGCAGCACGCAGAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
19276810 CTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTAAGGCATGCGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19276873 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAACGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ***
19276938 CAT-GGGTATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATTACCGGAG
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
19277002 AACCTGACCGGCCGCATTGGGGTTCCGACGAT--------CGGGGGGGTGTGCACACATGATGTG
130 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19277059 CAATGGGTGCTGGTACTTGGTCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19277124 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAACCGTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19277189 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACGTCCAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19277254 TGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAGTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAA
* * * * *
19277319 ATTTTAAAAAATCCCGAGCCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAACCGAGTCGTCCT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19277384 GCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19277449 TTGGCACGCAGAAATATGAAGATGTGCCCAAACCC-CCTATCACCCTATCAATCCA-GAACTTCC
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCTTGC
* * * * * * *
19277512 GCATCTCATATCTCTGGCTGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCAGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * ** *
19277577 CTTAGGCATACGAAGGTCATTCCCAGTCTAAGATTGGA-CTGAACCGAGGGTTGTGGCAGCAAGA
712 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAGGA
* ** * *
19277641 TCGACAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGTCGGCT
776 TCGGCAGCACGCAGAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * * *
19277706 GAGCTTCCGTACGCTTGTGTT-TTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 GAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19277767 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * * *
19277832 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
19277897 ACCTGACCGCTGGCATTGGGGTTTCGACGATCGGAGGCCCGGGGCGGTGTGCGCACATGATGTGC
131 ACCTGACCGC-GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
19277962 GAA-GGTTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
195 -AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19278026 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19278091 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTC
324 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19278156 ATGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGTGCCAAAAATCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAA
* * * *
19278221 AAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAATGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
19278286 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAAGGA
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19278351 ATTGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19278416 GTATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCACCCGCTAGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* **
19278481 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAATAGCAGGAT
712 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGAT
* * * *
19278546 CGGCAGCACGCAGAGGGAGACCCGGCCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGATG
777 CGGCAGCACGCAGAGGG-GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
19278611 AGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19278671 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * **
19278736 CTTGGGCATGTGCTGGTATCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
19278801 ACCTGACCGACGGCATTAGGGGTTTCGACGATCGGGGGAGCC-GGGGGGTGTGTGCACATGATGT
131 ACCTGACCG-CGGCATT-GGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGT
19278865 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCA
193 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19278929 CACCCCCTTAGAGAGCATTTAAGATTTTATAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19278994 TGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19279059 TGTGCATGCCAACAAAAATGCAAGGATCACGTCTGCCAAGTTTTGGGCCAAAATTCCTTTCC-AA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCC-TTCCGAA
* * ** *
19279123 AAAATTTTAAAAAATCCCGAACAGAAAAAAGTTTTGAAAATCATGAAAAATGGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19279188 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCGTTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
19279253 GTAGTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCAACCACCCTATTGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** *
19279318 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCATCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
19279383 GGCTTAGGCATACT-GAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGCTACAGCAGTA
710 GGCTTAGGCATA-TGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCAGCAGCA
* * * * * * * *
19279446 GGATCGACAGCATGC--A---GACCCGACCAATCCCTGGCTTGCTCATCCCGCCCGTCTGGCCAG
773 GGATCGGCAGCACGCAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
19279506 CTGAGCACCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACTGAGTTCATTCCCAGTCTAAGC
838 CTGAGCGCCCGCACGCTCGTTTC----G-TG-----GG--T--TGA---C-TT---AG-----GC
* *
19279571 ATACAGAGTTCCTTCCCAGTCTAA
877 ATACGGAGTTCATTCCCAGTCTAA
* * *
19279595 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19279660 CTCGGGCATGTGCTGGTGACGTATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
19279725 ACCTAATCGGCGGCATTGCGGTTTCGACGATCGGGGGGCCGGGAGGGGTGTGCGCACATGATGTG
131 ACCTGA-CCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATGTG
* *
19279790 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19279855 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19279920 TGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19279985 TGCATTCCAACAACAATAGAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
* ** ** *
19280050 ATTTTAAAAAATCCCCAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19280115 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCAAT-AAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19280179 TTGGCATGCAGAAATATGAAAATGTACCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
19280244 CAACCCGTCTCTCTGGTCGGCGTTGTGTCCGCCCGGCCGTCCACCCGCTCGTTTCCTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
19280309 TTAGGCTTACT-GAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAACAGTAGGAT
713 TTAGGCATA-TGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGAT
* * * *
19280373 CGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
777 CGGCAGCACGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
19280438 AACGCCCGCATGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
19280498 CCGTACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
19280563 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG---CA----C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19280617 ACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19280682 CAATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19280747 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGACAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19280812 TGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19280877 TGAATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGATCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAA
* * * * *
19280942 ATTTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTG
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
19281007 GCAACGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19281072 TTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
19281137 CATCCCGTCTTTCTGGCCGGTGTAGT----GCCCACCCGCCCGCCCTCTCGTTTCGTTGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
19281198 TTAGGCATACGGAGTTCATTCCCAATCTAAGACCGGACCGGACC-------G--GCAGCAGGATC
713 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATC
** * * *
19281254 GGCAGCACGCAGAGGGGAATGCGGCCGATCCTCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTGA
778 GGCAGCACGCAGAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
19281319 GCACCCGTACGCTCGTTTCGTCGGTTGACTTAGGTATATGAAGTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19281378 GCATACGGAGTTCAATCCCAGTCTAGGATCGGACCAGATCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
*
19281442 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCAGGGG---CA----C---G-ATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
19281495 GAACCTGATCGACGGTATTGGGGTTCCGGCGATCGGGGGGCCGGGTGGGGTGTGCGCATATGATG
129 GAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATG
* * *
19281560 TGCGATGGGTGCTGGTGCTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19281625 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
19281690 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19281755 TGTGCATGACAACAAAAATACAAAGATCACGTCCACCAAGTTTGTTGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCGAAA
* *
19281820 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAGAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
19281885 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19281950 CATTGGCA-GCCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTT
581 CATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19282014 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCGCCCGCCCACTCGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
19282079 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACC---GG-T-----AGTAGG
710 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGG
* * *
19282135 ATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
775 ATCGGCAGCACGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
19282200 TGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTTTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
19282262 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19282327 CTCGAGCATGTGCTGGTGCCGCATTTTCCTTCATCGGGGCACCATCGTCGGAGCATCGACGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19282392 ACCTGACCGACGGCATTGGGGCTT-CG-GGATCGGGGGGGCCGGGGGCGTGTGCCCACATGATGT
131 ACCTGACCG-CGGCATTGGGG-TTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
** * *
19282455 GTGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
193 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19282520 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19282585 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *** *
19282649 GTGAATGCCAACAAAAATTCAAGGATCGTATCTACCAAGTTTGGGGCCAAGACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
*
19282714 AATTTTAAAAAATCCTC-AACCGCAAAAAGTTTCAAAAATC
452 AATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAATC
19282754 GTCTCTCGAC
Statistics
Matches: 5924, Mismatches: 675, Indels: 314
0.86 0.10 0.05
Matches are distributed among these distances:
860 84 0.01
861 33 0.01
862 3 0.00
865 1 0.00
866 2 0.00
867 1 0.00
871 1 0.00
873 4 0.00
874 354 0.06
875 271 0.05
876 1 0.00
879 19 0.00
880 705 0.12
881 1 0.00
882 1 0.00
884 272 0.05
885 5 0.00
887 3 0.00
889 67 0.01
890 47 0.01
891 407 0.07
892 405 0.07
893 213 0.04
894 502 0.08
895 44 0.01
896 3 0.00
898 59 0.01
899 39 0.01
900 83 0.01
901 1 0.00
902 151 0.03
903 382 0.06
904 847 0.14
905 99 0.02
906 2 0.00
908 3 0.00
910 1 0.00
911 2 0.00
912 4 0.00
915 4 0.00
916 2 0.00
917 1 0.00
919 4 0.00
922 3 0.00
923 213 0.04
924 438 0.07
925 83 0.01
929 54 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCA
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGC
AGCACGCAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19279573 original size:26 final size:26
Alignment explanation
Indices: 19279543--19279621 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19279533 GTTGATTTAG
*
19279543 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19279569 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19279595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19279621 G
1 G
19279622 ATCGGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19282991 original size:26 final size:26
Alignment explanation
Indices: 19282962--19283014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19282952 GTTGACTTAG
*
19282962 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19282988 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19283014 G
1 G
19283015 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19283898 original size:26 final size:26
Alignment explanation
Indices: 19283869--19283921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19283859 GTTGACTTAG
* *
19283869 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19283895 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19283921 G
1 G
19283922 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19286595 original size:26 final size:26
Alignment explanation
Indices: 19286558--19286610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19286548 GTTGACTTAC
* *
19286558 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
19286584 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
19286610 G
1 G
19286611 ATCAGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:19286598 original size:902 final size:901
Alignment explanation
Indices: 19282768--19288303 Score: 6805
Period size: 894 Copynumber: 6.2 Consensus size: 901
19282758 CTCGACCGAT
* * * * * *
19282768 GTAGTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGATTACGCATACGAAGTTCATTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
19282833 CCAGACTAAGATCAGACCAGCTAAGGGTT-----A-C--G---G-CAGCACGCAGAGGGGGACCC
66 CCAGTCTAAGATCAGACCAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * * * * *
19282886 GGCCGATCCCCGACTTACACATGCCGCCCCTCTGGCAGGCTGAGCGCTCGCCCGCTCGTTTCGTG
131 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
19282951 GGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
196 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
19283016 TCGGACCAGATCAAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
261 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * ** * *
19283081 CTTCGCCGAGACACCATCGTCGGAGCATCGTCGGAGAACTTGATCGGTGGCATTAGGGTTCTAGC
326 CTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGC
* ** **
19283146 AATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
391 GATTAGGGGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
19283211 TTGGCCTCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
455 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
19283276 CAAGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAA
520 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
19283341 ATATTGTATAGTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATGAC
585 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * * * * *
19283406 GTCTACCAAGTTTATGACCAAAAATCCTTCCGAAATAATTTGAAAAAATCTCAAACCGT-AAAAA
650 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CAAACC-TCAAAAA
* ** * * *
19283470 CTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAA
713 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
19283535 GGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAACATGTGC
778 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
19283600 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
843 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19283659 GTAGTTCCCGCCCGCCCGGCCGCCCGTCTGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * * *
19283724 ATT-CCAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGTAGGATCGACAGCACGCAGAGGGG
62 ATTCCCAGTCTAAGATCAGAC-CAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * *
19283788 TACCCGGCTGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATT
126 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
19283853 TCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTC
191 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * *
19283918 TAAGATCGGACTGGACCGGGGGTTGCAACAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTC
256 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-C
* *
19283983 -TTTTTCTTCGTCGGGGCTCCATCG-C----CA------GAGAACCTGACCGACGGCATTGGGGT
320 ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* * * *
19284036 TCCAGCGA-TCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCC
385 TCCAGCGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
19284100 CTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGCATTTGAGA
450 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
19284165 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
515 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
19284230 ACAAAATCTTGTACACTTC-ATGTTTTTAGCT-AATTTGTTTTGTGCATGCCAACAAAAATACAA
580 ACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAA
* * *
19284293 GGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAACAAAATTTTAAAACATCCCAAACCT
643 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCAAACCT
* ** * *
19284358 CAAAAATTTTTGAAAATCCTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
707 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
19284423 GCTTAAGGGACCATAGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACACAAATATGAAG
772 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19284488 ATGTGGCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGAC
837 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* **
19284553 GTAGT--------GCCCGCCCGTCCGCTCGTTTCGTCGGTTTATCTTAGGCATACGGAGTTCATT
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATT
* *
19284610 CCCAGTCTAAGATCGGACCAAACTGAGGGTTGTGGCAGCAGGATC-AGCAGCACGCAGAGGGGGA
65 CCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGA
* * * * * ** * *
19284674 CCCAATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACGGAGCAACCACACGCTCGTTTT
128 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * ** *
19284739 ATGGGTTGACTTAGG-ATACGGATTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGACTA
193 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * ** * *
19284803 AGGTCGGATCGAACAGAGGGTTTCGATAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
258 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
19284868 TTTCTTCCCCGGGGCACAAT-GACCGGAGCATCGTCGGAAAACCTGACCGACGGCATTGGGGTT-
323 TTTCTTCGCCGGGGCACCATCG-CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * * *
19284931 CAGACG-CTCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCC
387 CAG-CGATTAG-GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
19284995 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAGGAGCATTTGAAA
450 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * ** * *
19285060 TTTTACATGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACACTTTTCAAATTGTG
515 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
19285125 ACAAAATCTCGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAG
580 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAG
** * * *
19285190 GATCACGTCTACCAAGTTTGGGGTGAAAAATCATTCCAAAAAAATTTTAAAAAATCCCGAA-CTG
644 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCAAACCT-
* * * *
19285254 CAAAAAGTTTTC-AAAATCTTGAAAATTAGAAAATAACTCGTCTTGCCATGAAACTTCACGTGAA
707 CAAAAAG-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
19285318 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
771 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
19285383 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTAGTCGG
836 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
19285448 T
901 C
** *
19285449 GTAGTGCTTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * *
19285514 CTAATCTAAGATCAGACCAGATTGAGGGTTGC-TCTAGCAGAATCAACAGCATGTAGAAGGGGAC
66 CCAGTCTAAGATCAGACCA-ACTGAGGGTTGCGGC-AGCAGGATCGACAGCACGCAGAGGGGGAC
* * *** * * * *
19285578 CCGGCCAATTTTCGGCTTGCGCAACCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTG
129 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
19285643 TGGGTTGACTTAGGCATACGGAGTCCATTCCCATTCCAAGCATATGGAGTTCATTCCCAATCTAA
194 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19285708 GATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGTGCCCGGGCATGTGCTGGTGCGGCATTT
259 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *
19285773 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCA
324 TTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCA
*
19285838 GCGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTAT
389 GCGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
19285903 ATAGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAAAGCATTTGAGATTTT
454 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
19285968 ACAGGTTTGCTGCCAGTAAG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
519 ACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * ***
19286032 AAATCTTGCACACTTCGAGTTTTTGGCTGAACTTTTTTGTGCACATCAACAAAAATACAAGGATC
583 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
19286097 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCGGAACC-CAAAA
648 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-AAACCTCAAAA
*
19286161 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
712 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
19286226 ATGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCCA-AAATATGAAGATGT
777 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGT
* * * * *
19286290 GCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGGGCATCCCGTCTCTCTGGCAGAC
841 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19286351 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCTTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** *
19286416 CCAGTGTAAGATCAGACCGAACTGAAGGTTGCAGCAGTAGGATCGGTAGCACACAGAGGGGGACC
66 CCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
*** * * * *
19286481 CGACCGATCCCTAACTTGCGCATCTCGCCCGTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGT
130 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
19286546 GGGTTGACTTACGCATACGGAGTTCATTCCTAGTATAAGCATACGAAGTTCATTCCCAGTCTAAG
195 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * *
19286611 ATCAGACCATACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTT
260 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *
19286676 TCTTCACCGGGGCACCAT--------CA-C--CGGAGAACCTGACCGACGGTATTGGGGTTCC-G
325 TCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAG
* *
19286729 ACGATCA-GGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTT
390 -CGATTAGGGGGGCCA--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
19286793 ATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
452 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19286858 TTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
517 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19286923 AAAATCTTTTACACTTCCAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGAT
582 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ** * *
19286988 CACGTCTACCAAATTTGGGGCCAAAACTTTTTCCAAAAAAATTTTAAAAAATCTCGAACCTTAAA
647 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CAAACCTCAAA
* * * *
19287053 AAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
711 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
19287118 AAGGGACCATGGTTTTAATTTACATGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGT
776 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
19287182 GCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGAATCTCGTCTCTCTGGCCGGC
841 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19287243 GTAGT----TCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * **
19287304 CTAGTCTACGATC-GAACCAGATTGAGGGTTGCGGTAGCAAGATCGGCAGCAAGCAGCGATGGAC
66 CCAGTCTAAGATCAG-ACCA-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * * * * * * *
19287368 TCGATCGATACCTGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGTTCGTTTCA
129 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19287433 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCTAGTCTAA
194 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19287498 GATCGGACCGGGCCGAAGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
259 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
19287563 TTCTTCACCGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCAGCATTGGGGTT---
324 TTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCA
* ** * **
19287625 TCGA--A-----G--ATCGAG-G-G-GC-C-----G-G-GA--GGTG-T-GTACTTGGATCTTAT
389 GCGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
19287666 ATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTCAGATTTT
454 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19287731 ACAGGTTTGCTGCCAGTAGGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACA
519 ACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
19287796 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATATACAAGGAT
583 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGAT
* * * * * *
19287861 AACGTCTACCAAGTGTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCAGAAACACAAA
647 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCA-AACCTCAAA
*
19287926 AAGTTTCCAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
711 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * * * ** * *
19287991 AAGAAAACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGTACGTGGAACTGTGAAGATG
776 AAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
19288056 TGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCTGGC
840 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19288118 GTAGTGCCCGCCCGCACGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTC
1 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
19288183 CCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGGACC
66 CCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
* * *
19288248 CGACCGATCCCCGACTTTCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
130 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
19288304 CCACACGCCC
Statistics
Matches: 4007, Mismatches: 538, Indels: 212
0.84 0.11 0.04
Matches are distributed among these distances:
871 90 0.02
872 93 0.02
873 129 0.03
874 21 0.01
875 89 0.02
876 1 0.00
877 1 0.00
879 145 0.04
880 2 0.00
882 12 0.00
883 135 0.03
884 121 0.03
885 3 0.00
886 13 0.00
887 2 0.00
888 283 0.07
890 10 0.00
891 61 0.02
892 365 0.09
893 101 0.03
894 504 0.13
895 251 0.06
896 281 0.07
897 4 0.00
899 26 0.01
900 1 0.00
901 4 0.00
902 457 0.11
903 203 0.05
904 383 0.10
905 8 0.00
906 2 0.00
907 205 0.05
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGC
GATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCAAACCTCAAAAAGTT
TCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
Done.