Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 105 of 117
Found at i:19287481 original size:26 final size:26
Alignment explanation
Indices: 19287447--19287497 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19287437 TTGACTTAGG
19287447 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
* *
19287473 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19287498 GATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19289115 original size:26 final size:26
Alignment explanation
Indices: 19289086--19289138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19289076 GTTGACTTAG
* *
19289086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
19289112 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
19289138 G
1 G
19289139 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:19289531 original size:892 final size:892
Alignment explanation
Indices: 19288326--19294364 Score: 7544
Period size: 892 Copynumber: 6.8 Consensus size: 892
19288316 TCGTTTCGTG
* * * * * *
19288326 ATCCACGGAGCATCACTGGAGAACTTGACCGACGACATTGGGGTTCCAGTGACCGGGGGGGTCGG
1 ATCC-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCCGG
* * * *
19288391 GGGGTGTGCGCACGTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAAACCCT
64 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
19288456 CGTCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
129 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* **
19288521 AGCCACTAAAGTGTCTGAAATGGGGACAAATTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
194 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* **
19288586 GTTTTTAGCTGAATATTTTTTTGGAAGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGG
259 GTTTTTAGCTGAAT-TTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * * *
19288651 ACCAAAACCCCTTCTGAAAAAATTTCAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATTGTGAA
323 GCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAA
19288716 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
388 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
19288781 TTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
453 TTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19288846 CCTATCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGACGT-GATGCCCG-CCTGTCCGCTC
518 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCTGTCCGCTC
* *
19288909 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGACCAGACTGAGGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* * * * *
19288974 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATTCCCGACTCGTGCATTCTGCC
647 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGACTTGCGCATCCCGCC
* * * *
19289039 CCTCTGGCCAGTTGAGCGCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
712 CCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
* * * * * **
19289104 CAGTCTAAGCATACGGAGTTCATTCCAAATCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAC
777 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAC
* * *
19289169 GTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
842 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * *
19289220 ATCCACAGAGCATCACCGGAGAACTTGACCGACGGCATTGGGGTTCCAGCGATC-GGGGGGTC-G
1 ATCC-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCCGG
*
19289283 GGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
64 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
19289348 CGTCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
129 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
19289413 AGCCACTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
194 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
19289478 GTTTTTAGCTGAATGTTTTTTTGGAAGCTAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGG
259 GTTTTTAGCTGAAT-TTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * * * * *
19289543 ACCAAAACCCCTTCTGAAAAAATTTCAAAAAATCTTGAACCGCAAAAAGCTTCAAAAATTGTAAA
323 GCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAA
*
19289608 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
388 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
19289673 TTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
453 TTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
19289738 CCTATCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGACGTGGTGCCCG-CCTGTCCGCTCG
518 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTGTCCGCTCG
* *
19289802 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGACCAGACTGAGGGTT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
** * **
19289867 GCGGTAGCAGGATCAACAGCACGTC-GAGGGGGACCCGATCGATTCCCGACTTGCGTATTTCGCC
648 GCGGTAGCAGGATCGGCAGCACG-CAGAGGGGGACCCGATCGATTCCCGACTTGCGCATCCCGCC
* * * * *
19289931 CCTGTGGCCGGTTGAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
712 CCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* *
19289996 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCA
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCA
* *
19290061 CATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTC-TCTATCGGGGCACC
841 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACC
* * *
19290113 AT--C---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAGCCAGG
1 ATCCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGG
* * * * *
19290168 GGGTGTTCGCACAAGATGTGCGATGGGTGATGGTACTTGGGCCCTTATATTGGCCCCCCATCCCC
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCT
* * * *
19290233 CATCACACCTCCAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
129 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
19290298 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGC-TGTAGACTTCG
194 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCG
* ** * * * * *
19290362 AGTTTTCAGCTGAATTTTTTTATGCATTCCAATAAAAATACAAGGATAACATATACCAAGTTTAG
258 AGTTTTTAGCTGAATTTTTTT-TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
19290427 GCCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGA
322 GGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGA
* *
19290492 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAA
387 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
19290557 TTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCTTAAACCCACCTACC
452 TTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
19290621 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG-CGGCATAGTGCCCGACCACCCGTCC
516 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCTGTCC
* *
19290685 GCCCGATCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
578 G--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
19290750 CTGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGACGGGGACCCGATCGA-TCCCTGACTTGCG
639 CTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCC-GACTTGCG
* * *
19290814 CATCCCGCCCCTCTGACCGGCTGAGCGCCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACAG
703 CATCCCGCCCCTCTGGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* *** **
19290879 AGTTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATAAAACCGGATGGAGGGTT
767 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * *
19290944 GCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACC
832 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * * * *
19291005 ATCGCTGGAGCATCACCGAAGAACCTGATCGATGGCATTGGGTTTCCTGCGATCGGGGGGGCCGG
1 ATC-CCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCC--
* *
19291070 GGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTAT
62 -G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
19291135 CCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
125 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
19291200 CAGTAGCCATTAAAGTGTCGGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACT
190 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
19291265 TCGAGTTTTTAGCTG-ATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
255 TCGAGTTTTTAGCTGAATTTTTTT-TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
19291329 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCG
319 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCG
* *
19291394 TG-AAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
384 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * * *
19291458 GAACTTACAAGCCATAAAAATGTTATTGGCACGCAGAAATATAAAGATGT-CCTTAAACACACCT
449 GAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCC-TAAACCCACCT
* * ** * * *
19291522 ACCACCCTATCGATCCATGGCTTGCACATCTTGTCTCTCTGGCCGGTGT-GATGCCCACCC-GCC
513 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCTGTC
* * * **
19291585 CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
577 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * ** ** * *
19291650 AGGGTTACAGCTA-CAGGATCGATAGCACATAGAGGGGGACCCGATC-AATCCTC-ACCTTACGC
642 AGGGTTGC-GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCC-CGA-CTTGCGC
*
19291712 ATCCCGCCCCTCTGGCCGGCTGAGCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
704 ATCCCGCCCCTCTGGCCGGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-
* * *
19291776 AATTCATTCCCAGTCTCAG-AT-C--AG---A----C---C--AGA-CTGA---G---GA---TT
767 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
** * * * *
19291815 ATGATAGAACATGCTGGGCTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
832 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
** * * * *
19291876 ATCGCCGGAGCATTGCCGAAGAACCTGA-CTAGCGGAATTGGGGTTCTGACGATCGGGGGGGCCG
1 ATC-CCGGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCG-CGATCGGGGGGGCCG
* * *
19291940 GGGGGTGTGCACACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
63 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
19292005 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
128 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
19292070 TAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCGAATGGTTACAAAATGTTGTACACTTCG
193 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * ** * *
19292135 ACTTTTTAGCTAAATGCTTTCGTGCAAGGCAACAAAAACACAAGGATCACGTCTACCAAGTTTGG
258 AGTTTTTAGCTGAAT-TTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * *
19292200 GGTAAAAACTCCTTTCGAAAAAATTTAAAAAAAT-CTCGAACCATTAAAAGTTTTGAAAATCGTG
322 GGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTG
*
19292264 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
386 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
19292329 ATATACAAGCCATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTAC
451 ATTTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** *
19292393 CACCTTATCAATCCGTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCACGCCCGCT
515 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG-CC-CT
* * * * * *
19292458 CTCCCACTCGTTTCGTCAGTTGGCTTAGGCAGAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCA
574 GT-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCA
* * * * * *
19292522 AACTGAGGGTTGCGGTAGCATGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGT
637 GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGACTTGC
* * *
19292587 GCATCCCGCGCCTCTGGCCGACTGAGCGCC-CACAAGCTCATTTCGTGGGTTGACTTAGGCATAC
702 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCAC--GCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
19292651 AGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGT
765 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
19292716 TTCCGGTAGCACATACTGGGCTCTGGCATGTGCTCGG-GCCGTATTTTTCTTCATCAGGGCACC
830 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCATCGGGGCACC
* ** * *
19292779 ATCGTCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGCTCCGACGATCGGGGGGGCCAG
1 ATC-CCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGGCC--
* * * *
19292844 GGGGGGTGTGCGCACATGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCA
62 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
19292909 CTCATCAAACCTC-AGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTG-C
127 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCC
* *
19292971 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTTCAAAATGCTCACAAAATCTTGGACA
191 AGTAGCCATTAAAGTGTCTGAAATGGGGACAC--TTTTTTC-AAATGGTCACAAAATCTTGTACA
* * * *
19293036 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCTAACAAAAATACAATGATCACGTCTACCAAG
253 CTTCGAGTTTTTAGCTGAATT-TTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
19293101 TTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAATCCCGAATCGTAAAATGTTTCGAAAAT
317 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAAT
* * *
19293165 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGT
382 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
19293230 GTGAATTTACAAGCCATAAAAATGGTATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACC
447 ATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19293295 TATCACCCTATCGATCCAAGGTTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTC
512 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CT-
* * *
19293360 GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTCCTAGTCTAAGATC
574 --------GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** * * * * * **
19293425 AGACC-GAACAAAGGGTTGCGG-CCCAGGATTGCCAGCATGTAGAGGGGGACCCGGTCGAGCCCC
631 AGACCAG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCC
* *
19293488 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
695 GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19293553 GCATACAGAGTTCAATCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
759 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** *
19293618 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGTATGTGCTGGTGCTACATTTTTCTTCGTCGGGG
824 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
19293683 CACC
889 CACC
* * * *
19293687 AT--C---G-----CCGGAGAGCCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGG
1 ATCCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGG
* * *
19293742 GGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTC
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
19293807 ATCAAACCTCAAGAACCCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTA
130 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
19293872 GCCATTAAAGTGTCTGAAATGGGGTCGCTTTTTTCAAATGGCCACAAAA-CTTGTACACTTCGAG
195 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
19293936 TTTTTAGCTGAATTTTTTTTGTGCATGCCAAC-AAAATACAAGGAT-ACGTCTACCAAGTTTGGG
260 TTTTTAGCTGAA-TTTTTTT-TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* ** *
19293999 GCCAAAACTCCCTT-CGAAAAAAATTTTAAAAAAAT-CTGAACC-TTAAAAGTTTAAAAAATCCT
323 GCCAAAACT-CCTTCCG-AAAAAA-TTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGT
19294061 G-AAAATAGAAAACGAGTTCGTCTTGCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
385 GAAAAATAGAAAACGAG-TCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
19294125 TGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAG-AATATG--GATGTGGCCT-AACCCAC
448 TGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGT-GCCTAAACCCAC
*
19294185 CTACCCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
511 CTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-C
* * *
19294250 TCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCAG
573 T-GTCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
19294315 ACCAG-CTGAGGGTTGCGGCAGTAGGATTGGCAGCATGCAGAAGGGGACCC
633 ACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC
19294365 AGCCAATCCA
Statistics
Matches: 4535, Mismatches: 464, Indels: 298
0.86 0.09 0.06
Matches are distributed among these distances:
867 192 0.04
868 98 0.02
869 158 0.03
870 6 0.00
871 106 0.02
872 1 0.00
873 1 0.00
874 4 0.00
875 4 0.00
876 5 0.00
877 165 0.04
878 5 0.00
879 1 0.00
880 1 0.00
881 6 0.00
882 34 0.01
883 7 0.00
884 60 0.01
885 401 0.09
886 2 0.00
887 12 0.00
888 86 0.02
889 1 0.00
890 3 0.00
891 23 0.01
892 1018 0.22
893 246 0.05
894 152 0.03
895 85 0.02
896 20 0.00
897 273 0.06
898 6 0.00
899 1 0.00
900 3 0.00
901 12 0.00
902 4 0.00
903 208 0.05
904 173 0.04
905 385 0.08
906 254 0.06
907 38 0.01
908 206 0.05
909 65 0.01
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
ATCCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTGTCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGACTTGCGCATCCCGCCCCTC
TGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
Found at i:19290008 original size:26 final size:26
Alignment explanation
Indices: 19289979--19290031 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19289969 GTTGACTTAG
19289979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19290005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19290031 G
1 G
19290032 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19290900 original size:26 final size:26
Alignment explanation
Indices: 19290871--19290923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19290861 GTTGACTTAG
*
19290871 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
*
19290897 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
19290923 G
1 G
19290924 ATAAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:19293589 original size:26 final size:26
Alignment explanation
Indices: 19293553--19293605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19293543 GTTGACTTAG
*
19293553 GCATACAGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
19293579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
19293605 G
1 G
19293606 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:19293743 original size:905 final size:887
Alignment explanation
Indices: 19291768--19294364 Score: 3406
Period size: 905 Copynumber: 2.9 Consensus size: 887
19291758 GTTGACTTAG
* * * * * * * *
19291768 GCATACGAAATTCATTCCCAGTCTCAGATCAGACCAGACTGAGGATTATGATAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTACGGTAGCACATGCTGGG
* *
19291833 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--GCC---TA
* *
19291898 ACCTGACTAGCGGAATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
125 ACC-G----GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
* *
19291962 TGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
185 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCAC
19292027 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
* * * * * * * *
19292092 GGCGACACTTTTTTCGAATGGTTACAAAATGTTGTACACTTCGACTTTTTAGCT-AAATGCTTTC
313 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTT
* * **
19292156 GTGCAAGGCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTCCTTTCGAAAA
377 GTGC-ATGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAA
* * * *
19292221 AATTTAAAAAAATCTCGAACCATTAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
440 AATTT-TAAAAATCCCGAACC-TTAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCATCT
*
19292286 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGC
503 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * **
19292351 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCAATCCGTGGCTTGC
568 ATTGGCTCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
* * * * * *
19292416 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCACG--C-CCGCTCTCCCACTCGTTTCGTCAGT
633 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCCCCGCCCACTCGTTTCGTCGGT
* * * *
19292478 TGGCTTAGGCAGAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCAAACTGAGGGTTGCGGTAGCA
698 TGGCTTAGGCATACGGAG-TCATTCCCAGTCTAAGATC-AGACC-AACTGAGGGTTGCGG-CGCA
* * * * * *
19292542 TGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCGCCTCTGGCCG
759 GGATTGGCAGCATGCAGAGGGGGACCCGACCGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
19292607 ACTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
824 ACTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCTAGTCTAA
* * * * * *
19292671 GCAGACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTCCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTACGGTAGCACATGCTGGG
* * * *
19292736 CTCTGGCATGTGCTCGG-GCCGTATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCGTCGAAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--CG--G-AG
* * * * * *
19292800 AACCTGACCGACGGCATTGGGGCTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATT
119 AGCCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCACACATGATG
** *
19292865 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCACTCATCAAACCTC-AGAACTC
183 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTCAAGAACTC
19292929 AC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCAGTAGCCATTAAAGTGTCTGAA
*
19292993 ATGGGGACACTTTTTTTTCAAAATGCTCACAAAATCTTGGACACTTCGAGTTTTTAGCTGAATTG
311 ATGGGGACAC--TTTTTTC-AAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
*
19293058 TTTTGTGCATGCTAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
373 TTTTGTGCATGC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CG
* * *
19293123 AAAAAATTTTAAAAATCCCGAATCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCA
436 AAAAAATTTTAAAAATCCCGAACCTTAAAA-GTTTAGAAAATCATGAAAAATAGAAAACGAGTCA
* *
19293188 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
500 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19293253 GGTATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCAAGGTT
565 GGCATTGGCTCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
* *
19293318 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCACCCGCCCGCTCGTTTCGT
630 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCC-CCCGCCCACTCGTTTCGT
* ** *
19293383 CGGTTGGCTTAGGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGAACAAAGGGTTGCGGCC
694 CGGTTGGCTTAGGCATACGGAGT-CATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCGGCG
* * **
19293448 CAGGATTGCCAGCATGTAGAGGGGGACCCGGTCGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGC
757 CAGGATTGGCAGCATGCAGAGGGGGACCCGACCGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
19293513 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCTAGTCTA
822 CGACTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCTAGTCTA
19293578 A
887 A
* *
19293579 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTACGGTAGCACATGCTGGG
* **
19293644 CTCGGGTATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAGCCTAACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAGCCTAACCGGC
*
19293709 GGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCACACATGATGTGTGATGGGTGCT
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCT
* *
19293773 GGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACCCACAACCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCC-TCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
19293838 GAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGTCGCTTT
260 GAGCATTTGAGATTTTACAGGTTTGCT-GCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19293903 TTTCAAATGGC-CACAAAA-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCA
324 TTTCAAAT-GCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTGTTTTGTGCATG-CA
19293966 AC-AAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAAATTTTAAA
386 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCG-AAAAAATTTT--A
* * * *
19294029 AAAAT-CTGAACCTTAAAAGTTTAAAAAATCCTG-AAAATAGAAAACGAGTTCGTCTTGCCCATG
447 AAAATCCCGAACCTTAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAG-TCATCTTG-CCATG
19294092 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
510 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-
*
19294157 T-GCAG-AATATG--GATGTGGCCT-AACCCACCTACCCACCCTATCGATCCACGGCTTGCGCAT
574 TCGCAGAAATATGAAGATGT-GCCTAAACCCACCTA-CCACCCTATCGATCCAAGGCTTGCGCAT
* *
19294217 CCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCG---CCCGCCCACTCATTTCGTCGGTTGGC
637 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCCCCGCCCACTCGTTTCGTCGGTTGGC
* *
19294279 TTAGGCATACGGAGGTCATTCCCAGTCTAAGATCAGACCAGCTGAGGGTTGCGGCAGTAGGATTG
702 TTAGGCATACGGA-GTCATTCCCAGTCTAAGATCAGACCAACTGAGGGTTGCGGC-GCAGGATTG
*
19294344 GCAGCATGCAGAAGGGGACCC
765 GCAGCATGCAGAGGGGGACCC
19294365 AGCCAATCCA
Statistics
Matches: 1493, Mismatches: 153, Indels: 111
0.85 0.09 0.06
Matches are distributed among these distances:
887 13 0.01
888 84 0.06
889 2 0.00
891 15 0.01
892 107 0.07
893 77 0.05
894 107 0.07
895 89 0.06
896 15 0.01
897 99 0.07
898 1 0.00
900 2 0.00
902 2 0.00
903 178 0.12
904 24 0.02
905 281 0.19
906 96 0.06
907 8 0.01
908 216 0.14
909 68 0.05
910 1 0.00
911 4 0.00
913 2 0.00
914 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAGCCTAACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAATCCCG
AACCTTAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCTCGCCCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TCATTCCCAGTCTAAGATCAGACCAACTGAGGGTTGCGGCGCAGGATTGGCAGCATGCAGAGGGG
GACCCGACCGAGCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACAAGCTCATT
TCGTGGGTTGACTTAGGCATACAGAGTTCAATCCTAGTCTAA
Found at i:19296399 original size:117 final size:117
Alignment explanation
Indices: 19296179--19296406 Score: 316
Period size: 117 Copynumber: 1.9 Consensus size: 117
19296169 AGGCATACAA
* *
19296179 AGTTCATTCCCAGTCTCAGATCAGATCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACAAAA
1 AGTTCATTCCCAGTCTCAGATCAGATCGAATCAAGGGTTACAGCAGCAGGATCGACAGCACAAAA
* * *
19296244 AGGGGGACCCGGTCGATCCCCGGCTTACTCATCCATCCCTTCTGGCTGACTG
66 AGGGGGACCCGGCCAATCCCCGGCTTACTCATCCATCCCCTCTGGCTGACTG
* * * * *
19296296 AGTTCATTCCCAGTCTCAGATTAGA-CTGAATCAAGGGTTACAGGAGTAGGATCGGCAGCACACA
1 AGTTCATTCCCAGTCTCAGATCAGATC-GAATCAAGGGTTACAGCAGCAGGATCGACAGCACAAA
* *
19296360 AAGGGGGACCCGGCCAATCCCCGGCTT-GTGCATCTATCCCCTCTGGC
65 AAGGGGGACCCGGCCAATCCCCGGCTTACT-CATCCATCCCCTCTGGC
19296407 CGGTTGAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
116 2 0.02
117 95 0.98
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (117 bp):
AGTTCATTCCCAGTCTCAGATCAGATCGAATCAAGGGTTACAGCAGCAGGATCGACAGCACAAAA
AGGGGGACCCGGCCAATCCCCGGCTTACTCATCCATCCCCTCTGGCTGACTG
Found at i:19296483 original size:26 final size:26
Alignment explanation
Indices: 19296447--19296499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19296437 GTTGACTTAG
*
19296447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19296473 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19296499 G
1 G
19296500 ATCGAACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19297821 original size:25 final size:25
Alignment explanation
Indices: 19297774--19297821 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
19297764 ATTGCTTCCA
* *
19297774 AAAAAATTTTAAAAAAGCTTGAACC
1 AAAAAAGTTTAAAAAAGCGTGAACC
* *
19297799 AAAAAAGTTTCAAAAATCGTGAA
1 AAAAAAGTTTAAAAAAGCGTGAA
19297822 AAATAGAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (25 bp):
AAAAAAGTTTAAAAAAGCGTGAACC
Found at i:19298085 original size:26 final size:26
Alignment explanation
Indices: 19298046--19298098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19298036 GTTGGCTTAG
* * *
19298046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCACTCCCAGTCTAA
19298072 GCATACGAAATTCACTCCCAGTCTAA
1 GCATACGAAATTCACTCCCAGTCTAA
19298098 G
1 G
19298099 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCACTCCCAGTCTAA
Found at i:19298981 original size:26 final size:26
Alignment explanation
Indices: 19298945--19298995 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19298935 GTTGACTTAG
19298945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19298971 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19298996 TGATTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19300372 original size:901 final size:899
Alignment explanation
Indices: 19298025--19304433 Score: 8209
Period size: 901 Copynumber: 7.2 Consensus size: 899
19298015 GCCTGCCCAT
* * * * * *
19298025 TCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAATTCACTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
19298090 CAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * * *
19298155 CTACATTTTTCTTCGTCGGGGCACCAGCACCGAAGCATCACCGGAGAACCTGATCGGCGGCACTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTG
19298220 GGGTTCCGGCGATCGGGAGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
195 GGGTTCCGGCGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
19298285 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
19298350 TGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTGTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
19298414 TGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTAAATTTTTTTTTGCATGCCAACAAAAATA
388 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
19298479 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
453 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
**
19298544 CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
518 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
19298609 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
583 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
**
19298674 AAGATGTGCCTAAACCCACCTACCATTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
648 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
19298739 GGCATAGTGCCCG-CCCAC-C-CGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
713 GGCATAGTGCCCGCCCCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * * *
19298801 TCCTAGTCTAAGAT-TGAACCGAACCGAGGGTTATGGCAGCAGGATCGGCAGTAGGCAGAGGGGG
778 TCCCAGTCTAAGATCAG-ACC-AGCCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGG
* * * * *
19298865 ACCCGGTCGATCCCTGACTTGCGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
841 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
19298924 TCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * * * *
19298989 CAGTCTATGATTGGACCAGATCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
19299054 CCTCATTTTTCCTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTG
** * *
19299119 GGGTTCCTACGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
195 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19299184 CCCTTATATTGGCCCCCTATCCCTCGTCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCGTTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
19299249 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAATTG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
19299314 GTCACAAAATCTTGGACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * * * * **
19299379 AGGATCACGTCTATGAAGTATGGGGCTAAAACACGTCCCGAAAAAATTTTAAAAAATCGTGAACC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* ** * *
19299444 GCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAA
520 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
19299509 GGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
19299574 GATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTGGTCGG
650 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
19299639 CATAGTGCCCGCCCCTCCGCTCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
715 CATAGTGCCCGCCCC-CCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
19299704 CCCAGTCTAAGATCAGACCAGCTGAGGGTTGCGGCAGTAGGATTGGCAGCATGCAGAAGGGGACC
779 CCCAGTCTAAGATCAGACCAGCCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACC
* * * *
19299769 CAGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGTTGAGCGCCCGCACGC
844 CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
19299825 TTGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
19299889 AAGGCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGTTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * **
19299954 CCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACTGACGGTTTTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTG
* * ** *
19300019 GGGTTTCGGTGATCGGGTGGGCTCGGGGGGCATGCGCACATGATGTGCGATGGGTGCTAGTACTT
195 GGGTTCCGGCGATCGGG-GGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
19300084 GGCCCTTATATTGGCCCCATATCCTTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
19300149 TGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAATGTCTGAAATGGGGACAC-TTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
19300213 TGGCCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
388 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
19300278 CAAGGATCACATCTACCAAGTCTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCCCGAA
453 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
** * * *
19300343 CCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTTACGTG
518 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
19300408 AAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
583 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
19300473 ATGGTGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
648 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * *
19300538 GGCGTAGTGCCCGCCCACCTGCCCGCCCGTTCTTTTCGTCGGTTGGCTTAGGCATATGGAGTCCA
713 GGCATAGTGCCCGCCC-CCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
19300603 TTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGTAGCAAGATCGATAGCATGCAGAGGGGG
777 TTCCCAGTCTAAGATCAGACC-AGCCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGG
* * * * * *
19300668 ACCCGGTCGATACCCGGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAGTGCCCGTACGC
841 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * **
19300727 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACCAAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * *
19300792 CAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
19300857 CCACATTTTCCTTCATCGGGGCATCATCGCCGGAGCATCATCAGAGAACCTGACCGGCGGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACCGGCGGCATTG
* * * *
19300922 GGGTTCCGACGATC----GG--GGGGGTTGTGCACACATTATGTGCGATGGGTGCTGGTACTTGG
195 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19300981 CTCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
19301046 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGATATGGGGACACTTATTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
19301111 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * * * *
19301176 AGGATCGTGTCTTCAAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCTGAACC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* ** * * *
19301241 ATAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACGGGTAGTCTTGCCATGAAACTTCACGTGAA
520 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
19301306 GGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * *
19301371 GATGTGCCTAAA-CCACCTACCATCCTATGGATCGACGACTTGCGCATCCCGTCTTTTTGGCCGG
650 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
19301435 CCTAGT----G---CCCGCT----CGCTCGTTTTGTCAGTTGGCTTAGGCAGACGGAGTTTATTC
715 CATAGTGCCCGCCCCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
19301489 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGAT-TAGCAGCACGTAGAGGGGGAC
780 CCAGTCTAAGATCAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGA-CAGCATGCAGAGGGGGAC
* * **
19301553 CTGGCCAATCCCCGGCTTGCGCATCCTTCCCCTCTGGCCGGCTGAGCGCCCGCACGC
843 CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
19301610 TCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCA
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*** * * * *
19301675 CAGTCTAAGATCAGATTGGACCAAGGGTTCCAACAGTACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * * *
19301740 CCGTATTTTTCTTCGTCGGGGCACCA---T-----CA--CCGGAGAACTTGACCGACGACATTGG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGG
* * ** * * *
19301795 GGTTCTGGCGACCGGGGGGGTCATGGGGCTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTG
196 GGTTCCGGCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
19301860 GGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
259 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
19301925 GAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
324 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * * *
19301990 GGTCACAAAATCTTGTTCACTTTGAGTTTTTAGTTGAATTATTTTGTGCGTGCCAAAAAAAATAC
389 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
19302055 AAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAAC
454 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
19302120 CGTAAAATGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTTCACGTGA
519 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
19302185 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
584 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * * *
19302250 AGAAGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTTGTGCTTCCCGTCTCTCTGGCCA
649 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
19302315 GCGTAGTGCCCGCCCGTCTGCCCGTCC-CTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCAT
714 GCATAGTGCCCGCCC-CCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
19302379 TCCCGGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACATCATGCAGAGGGGGA
778 TCCCAGTCTAAGATCAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGA
* * * ** * * * * *
19302444 TCGGGCTGATCCTTGGCTTACGCATCGCGCCCCTCTGGCCGACTGAGCTCCCGCATGC
842 CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
19302502 TCGTTTCATGGGTTGACTTAGGCTTACAGAGTTCATTCCCAGTCTAGGCATACAGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** *
19302567 TAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGAG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
19302632 CCACATTTTTCTTTG-CTGGGGCACCATCG-CTGGAGCATCATCGGAGAACCTTACCAGCGGCAT
131 CCACATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATC-CCGGAGAACCTGACCGGCGGCAT
* * * *
19302695 TGGGGTTCCGACGATCGGGGTGGTCGGGGGGGGGTGTGCGCACATAATGTGCGATGGATGCTGGT
193 TGGGGTTCCGGCGATCGGGG-GG-C--CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19302760 ATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
254 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19302825 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTT
319 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
19302890 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAA
384 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
19302954 ACTTACAAGGATCAGGTGTACCAAGTTT-GGGCCAAAAACTCCTT-C-----------------T
449 A-ATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * * * *
19303000 ---GAACCGTAAAAAGTTTTGAAGATCATGAAAAATAGAAAACGAGTCATCTT-TCATGAAACTT
512 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19303061 CACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCTATAAAAATGGCATTGGCATGCAGA
577 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
19303126 GATATGAAGATGTGCCTAAACCTACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCTCT
642 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
19303191 CTCGCCGACGTAGTGCCCG-CCCAC-CT-----GCTCGTTTCGTTGGTTGG-TTAGGCATACGGA
707 CTGGCCGGCATAGTGCCCGCCCCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * * * **
19303248 GTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAGCAGGATTGACAACACACAGA
772 GTTCATTCCCAGTCTAAGATCAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGA
* * * * * * *
19303313 GGGGGACCCGGTCGATCCTCGGCTTGCACATCCCGTCCTTTTGGCCGGCTGAGCGCCTGCACGC
836 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
** * * *
19303377 TCGTTTTGTTGATTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** *
19303442 CAGTCTAAGATCAGACC-GAACCGAGGGTTACGGTAGCACAAGCTGGGCTCGGGCATGTGCTGGT
66 CAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
19303506 GCCACATTTTTCCTT-GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGTGACAT
130 GCCACATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACCGGCGGCAT
* * * *
19303570 TGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGCGCACACATGATGTGCGATGGGTGCTGGAACTT
193 TGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
19303635 GGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
19303700 TGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
19303765 TGGTCACAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
388 TGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
19303830 ACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGA
452 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* **
19303895 ACCGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
517 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* **
19303960 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATAT
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
*
19304025 GAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
647 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
19304090 TGGCATAGTGCTCGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTT
712 CGGCATAGTGCCCGCCC-CCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * **
19304155 ATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAGA---
776 ATTCCCAGTCTAAGATCAG-ACCAG-CCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGG
* * * * *
19304216 -GA---GG--GA-CTCGGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
839 GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
** * * *
19304270 TCGTTTCATGGGTCCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATT-C
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
19304334 CAGTCTAAGATCAGATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * *
19304399 CCGTATTTTTCTTTGTCGGGGCACCCTCGTCGGAG
131 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
19304434 AACTGACCGA
Statistics
Matches: 4775, Mismatches: 639, Indels: 199
0.85 0.11 0.04
Matches are distributed among these distances:
871 166 0.03
872 111 0.02
873 10 0.00
874 3 0.00
875 299 0.06
876 21 0.00
877 2 0.00
880 402 0.08
881 48 0.01
882 3 0.00
883 405 0.08
884 42 0.01
885 1 0.00
887 5 0.00
889 3 0.00
890 1 0.00
891 5 0.00
892 347 0.07
893 139 0.03
894 145 0.03
895 199 0.04
896 259 0.05
897 155 0.03
898 325 0.07
899 187 0.04
900 144 0.03
901 503 0.11
902 354 0.07
903 237 0.05
904 10 0.00
905 244 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (899 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCGGAGAACCTGACCGGCGGCATTGG
GGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
ATAGTGCCCGCCCCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGCCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCG
GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
Found at i:19301667 original size:26 final size:26
Alignment explanation
Indices: 19301631--19301683 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19301621 GTTGACTTAG
19301631 GCATACGGAGTTCATTC-CAAGTCTAA
1 GCATACGGAGTTCATTCAC-AGTCTAA
19301657 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19301683 G
1 G
19301684 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19302550 original size:26 final size:26
Alignment explanation
Indices: 19302520--19302573 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19302510 TGGGTTGACT
*
19302520 TAGGCTTACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
19302546 TAGGCATACAGAGTTCATTCCTAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
19302572 TA
1 TA
19302574 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:19303434 original size:26 final size:26
Alignment explanation
Indices: 19303398--19303450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19303388 ATTGACTTAG
19303398 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
19303424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19303450 G
1 G
19303451 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19304321 original size:26 final size:25
Alignment explanation
Indices: 19304291--19304342 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19304281 GTCCACTTAG
19304291 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
19304317 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
19304342 G
1 G
19304343 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:19304808 original size:829 final size:827
Alignment explanation
Indices: 19303631--19309417 Score: 4229
Period size: 829 Copynumber: 6.6 Consensus size: 827
19303621 GGGTGCTGGA
*
19303631 ACTTGGCCCTTATATTGGCCTC-CTATCCCTCATCAAACCTCGAGAACTCACAC-CCTCTTAAAG
1 ACTTGGCCCTTATATTGGCC-CGCTATCCCTCATCAAACCTCGAGAACTCACACACC-CTTAAAA
* * **
19303694 AGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTT
64 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTT
* * * *
19303759 TTCAAATGGTCACAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
129 TTCAAATGGTCAC-AAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAA
** * * * *
19303824 AAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAA
193 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAA
* ** *
19303889 TCCCGAACCGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
258 TCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
19303954 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACAT-A
323 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATCA
19304018 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCT
386 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCT
19304083 CTCTGGCTGGCATAGTGCTCGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATAC
451 CTCTGGCTGGCATAGTGC-CGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATAC
19304148 GGAGTTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGC
515 GGAGTTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGC
* *
19304213 AGAGAGGGACTCGGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCA
580 AGAGAGGGACTCGGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
*
19304278 TGGGTCCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCAGTCTAAG
645 TGGGTTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCAGTCTAAG
19304343 ATCAGATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
710 ATCAGATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
* *
19304408 TCTTTGTCGGGGCACCCTCGTCGGAGAACTGACCGATGACATTGGCTGTTGGT
775 TCTTTGTCGGGGCACCCTCGCCGGAGAACTGACCGACGACATTGGCTGTTGGT
*
19304461 ACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACACGCTTAAAAAG
1 ACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAAAG
*
19304526 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTGTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTT
19304591 CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
131 CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
* *
19304656 AATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAAATCCTTCTAAAAAATTTTTAAAAAATCC
196 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCC
*
19304721 CGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
261 CGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
19304786 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAA
19304851 TATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
19304916 GGCTGGCATAATGCCCGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAG
455 GGCTGGCATAGTG-CCGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAG
19304981 TTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAGAG
519 TTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAGAG
* *
19305046 AGGGACCCGGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGG
584 AGGGACTCGGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGG
*
19305111 TTCACTTAGGCATACAGAGTTCGTTCCTAGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCA
649 TTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCA
19305176 GATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
714 GATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
*
19305241 TGTCGGGGCACCCTCGCCGGAGAACTGACCGACGACATTGGGTGTTGGT
779 TGTCGGGGCACCCTCGCCGGAGAACTGACCGACGACATTGGCTGTTGGT
* *
19305290 ACTTGGCCCTTTTATTGGCCCGTTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAAAG
1 ACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAAAG
19305355 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTT
19305420 CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
131 CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
19305485 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCC
196 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCC
19305550 CGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
261 CGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
19305615 CGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAA
* *
19305680 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * ** * *
19305745 GGCCGGCATCGTGCCTGCCCGCCCGC-CCCCTCGTTCATTTCGTCGGTTGGCTTAGGCATACAGA
455 GGCTGGCATAGTGCC-GCCCGCCCGCTCGCC-CGTTTGTTTCATCGGTTGGCTTAGGCATACGGA
* * ** * * * ** ** * * **
19305809 GTTCATTCCCAGTCTGAGAT-GAGACTAGACCGACGGTTGTGGCAATAGGATCGGCAACACACAG
518 GTTTATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAG
* ** * * * * * **
19305873 AGGGGGACTTGGCCGATCCCCGGCTTGCGCATCCCACCCATCTGGCGGGCTGAACACCCGTATGC
582 AGAGGGAC-T---CG------GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
* * * * *
19305938 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCG
637 TCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTC-
* * * * *
19306003 TAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGGT
701 CAGTCTAAGATCAGATC-GGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
19306067 GCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCGGAGAACTTGACCGGCGGCATT
765 GCCGTATTTTTCTTTGTCGGGG------CACC----C-TCGCCGGAGAAC-TGACCGACGACATT
*
19306132 GG-GGTTCCGGT
818 GGCTGTT--GGT
** ****** * * * ** ** ** * *** *
19306143 GATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 -A-C---TTGGCCCTTATAT-TG-GC-C-CGCTAT-CCCT-CAT-C--AAACCT---CGAGA-AC
* * * ** *
19306208 TGGCCCCCTATCCCTCATCAAACCGCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
48 T--CACAC-A-CCCT--T-AAA----AAG------CA-----TT--TGAGATTTTA--------C
* * * *
19306273 AGGTTTGCTGCTAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
81 AGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* ** * **
19306338 TCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCCCG
146 TATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCATG
** * * * * * **
19306403 TC-AAAAACATTTTGGGCCAAAACTCCTACTAAAAAAATTTTTAAAAATCCCGAACCACAAAAAA
211 TCTACCAA-GTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACTGC-AAAAA
* * *
19306467 GTTTCGAATATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAA
274 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
19306532 GGGACCATTGTATGAATTTACAAGCCGTAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGA
339 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGC
* * * ** * * * *
19306597 GTAAACTCACCTACCACCCTATCGATCCACAACTTGCGCACCCCGTCTCTCTGCCCGGCGTAGTG
403 CTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTG
* * * ** * * * *
19306662 CCCGCCCGCCCGCCTTG-TCGCTCATTTCGTCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGT
468 -CCGCCCGCCCG-CTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGT
* * ** * * * **
19306726 GTAAGAT-TAGACCAAATTGAGGGTTGCGGTAGTAGGATC-AGCAGCACACAGAGGGGGAGCCGA
531 CTAAGATCGA-ACCGGATCGAGGGTTGCGATAGCAGGATCGA-CAGCATGCAGA----GAG--G-
* * * * *
19306789 TCGATCTCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTAAGC-ACC-CACA--CG-TTCGT---
587 --GA-CTCGGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGG
* * * *
19306846 TTCAC----G------G-GTTGA---C---T-TAGGCATACGGAGTTCATTCCCAGTCTAAGCTC
649 TTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATC
* *** * * *
19306893 AGACCGGACCAAGGGTTGCGGCAGCACATGATGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
713 AGATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* * * * *
19306958 TCGTCAGGGCACCATCGCCGGAGCATCGGGGGAGAACCTGACCGACGGCATTGG-GGTTCCGGTG
778 TTGTCGGGGCACC--C-TC---GC--C---GGAGAA-CTGACCGACGACATTGGCTGTT---G-G
19307022 AT
827 -T
* * * * * * * * *
19307024 CGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCGCTTAT-ATTGG
1 --A-----C-----TTG-GC-C-C-T--TAT---ATTGG-CCCGCTA--T--CCCTCATCA---A
* * * ** * *
19307088 CCCCCTA-TCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAG
37 ACCTCGAGAAC-TCA-CACA-C-C-----CTTA-A-------AAAG--CATTTGAGATTTTACAG
* * * * * * *
19307152 GTTTGCTGTCAGTAGGCATGAAAGTATCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATC
83 GTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATA
* * * * *
19307217 TTCTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGTATGCCAAAAAAAATACAAGGATCACGTC
148 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCATGTC
** * ** * * *
19307282 TACCAAGTTTGGTTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAGGTTT
213 TACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTT
* * *
19307347 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGAGA
278 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * ** *
19307412 CCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTGTATAG
343 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * * * ** *
19307477 ACCCACCAACCACCCTAGCGATCCATGACTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCG
407 ACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGT----G
* * * *
19307542 CCCGCCCGCCCGCCTGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATT-CC
468 -CCGCCCGCCCG-CT---CGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCC
* * * ** * * ** * *
19307606 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGATAGCGCGTAGAGGGGGACCCG
528 AGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAGAGAGGGA--C-
* * * * *
19307671 ATCGATCCCCAGCTTGGGCAT-CTCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATG
590 -TCG------GGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTG
* ** * ** *
19307735 GGTTGACTTAGGTGTACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGA
647 GGTTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGA
* * * ** * *
19307800 TCA-AACTGAACTAAGGGTTGCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
711 TCAGATC-GGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
* * * * * *
19307864 TCTTCG-CTGGGGAACCGTTACGGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG-GGTTCC
775 TCTTTGTC-GGGG---C---AC-----CCTCGCCGGAGAA-CTGACCGACGACATTGGCTGTT--
19307927 GACG-
825 G--GT
* * * * * *
19307931 ATCGGTGGGGCCGGCGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGCACTTGTTCCTTAT-A
1 A-C--T-TGGCC--C----T-T------AT-A--T----T--G-GC--CCGC-TATCCCTCATCA
** * * *** *
19307995 TTGGCCCCCTATCCCTCATCA-ATCCTCGAGAACTCACAGCCCCTTAAATAGCATTTGAGATTTT
36 ---AACCTCGAGAACTCA-CACA-CC-C----------------TTAAAAAGCATTTGAGATTTT
* *
19308059 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
79 ACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
19308124 AATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
144 AATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCA
* ** * ** * * * *
19308189 CGTCTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCGTAAGAA
209 TGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACTGCAAAAA
** * *
19308254 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAA
274 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
19308319 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGTAGAAATATGAAGATGTG
339 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC--AGAAATATGAAGATGTG
* ** *
19308383 CCTAAACCCACCGT-CCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGGCATAG
402 CCTAAACCCACC-TACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAG
* * * * *
19308447 TGCCCGCCTGCCCGCCCGCCCGCCTGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
466 TG-CCGCCCGCCCGCTCGCCCG--T-TT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTC
* * * ** *** *
19308512 CCAGTCTAAGATC-AGACC-GAACTGAGTGTTGCTGCA-GGCA-GATCGGTAGCACATAGAGGGG
526 CCAGTCTAAGATCGA-ACCGGATC-GAGGGTTGC-G-ATAGCAGGATCGACAGCATGCAGAGAGG
** *
19308573 GACCTGACCGATCACCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTT
587 GA-CT---CG------GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTT
* * * * **
19308638 TCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCCAGTC
642 TCGTGGGTTCACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATT-CCAGTC
* * * * ** * * *
19308703 TAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTACTGGTGCCGCA
706 TAAGATCAGATCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA
* * * * * *
19308768 -TTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCTGGAGAACCTAACCGGCGGCATTGG-GGT
771 TTTTTCTTTGTCGGGGCACC--C-TC---GC----C-GGAGAA-CTGACCGACGACATTGGCTGT
*
19308831 TCCGGCG
824 T--GG-T
** * *** * *
19308838 ATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCTTTAT-
1 A-C---TTGGCC-------CT-T------AT-AT-TG----GCCCGCT---A--T--CCCTCATC
** * * *** * * *
19308902 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTCAAAAAGCATCTGAGATTTT
35 A---AACCTCGAGAACTCA-CACACC-C---T------------T-AAAAAGCATTTGAGATTTT
* * * *
19308967 ACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
79 ACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
19309032 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAATAAAAATACAAGGATCA
144 AATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCA
** ** * * * *
19309097 CATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
209 TGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACTGCAAAAA
*** * * *
19309162 GTTGCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAA
274 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
19309227 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGTAGAAATATGAAGATGTG
339 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC--AGAAATATGAAGATGTG
* * * * *
19309291 CCTAAACCCATCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTTAGC-GGCGTAG
402 CCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCTGGCATAG
* * * *
19309355 T---GCCCGCCCAC-CTG--C--TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
466 TGCCGCCCGCCCGCTC-GCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAG
19309412 TCTAAG
530 TCTAAG
19309418 CATACGGAGT
Statistics
Matches: 4154, Mismatches: 485, Indels: 570
0.80 0.09 0.11
Matches are distributed among these distances:
827 3 0.00
828 7 0.00
829 1201 0.29
830 131 0.03
831 1 0.00
833 2 0.00
839 93 0.02
840 78 0.02
846 4 0.00
850 1 0.00
851 14 0.00
852 14 0.00
853 3 0.00
854 1 0.00
855 1 0.00
858 5 0.00
859 2 0.00
860 2 0.00
861 1 0.00
862 3 0.00
863 2 0.00
864 1 0.00
865 1 0.00
867 3 0.00
870 5 0.00
871 2 0.00
872 4 0.00
873 4 0.00
874 3 0.00
875 6 0.00
876 176 0.04
877 164 0.04
878 124 0.03
879 8 0.00
880 17 0.00
881 1 0.00
882 8 0.00
883 71 0.02
884 39 0.01
885 13 0.00
886 2 0.00
887 4 0.00
888 10 0.00
889 5 0.00
890 3 0.00
891 5 0.00
892 5 0.00
893 3 0.00
894 4 0.00
895 12 0.00
896 54 0.01
897 7 0.00
898 5 0.00
899 7 0.00
900 4 0.00
901 7 0.00
902 12 0.00
903 176 0.04
904 313 0.08
905 8 0.00
906 7 0.00
907 103 0.02
908 633 0.15
909 131 0.03
910 4 0.00
911 386 0.09
912 7 0.00
913 8 0.00
914 2 0.00
915 3 0.00
917 1 0.00
920 2 0.00
921 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (827 bp):
ACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAAAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTGTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAA
AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCC
CGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCTGGCATAGTGCCGCCCGCCCGCTCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTT
TATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCATGCAGAGAG
GGACTCGGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTT
CACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCAGA
TCGGACCAAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTG
TCGGGGCACCCTCGCCGGAGAACTGACCGACGACATTGGCTGTTGGT
Found at i:19305150 original size:26 final size:25
Alignment explanation
Indices: 19305120--19305171 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19305110 GTTCACTTAG
*
19305120 GCATACAGAGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
19305146 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
19305171 G
1 G
19305172 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:19307546 original size:4 final size:4
Alignment explanation
Indices: 19307537--19307566 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19307527 CCAGCGTAGT
*
19307537 GCCC GCCC GCCC GCCC GCCT GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
19307567 TCGTTTCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:19308691 original size:26 final size:26
Alignment explanation
Indices: 19308655--19308705 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19308645 TTTACTTAGG
19308655 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
19308681 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19308706 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:19309027 original size:908 final size:906
Alignment explanation
Indices: 19306864--19309363 Score: 3652
Period size: 908 Copynumber: 2.7 Consensus size: 906
19306854 TTGACTTAGG
* *
19306864 CATACGGAGTTCATTCCCAGTCTAAGCTCAGACCGGACCAAGGGTTGCGGCAGCACATGATGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGATGGGC
* *
19306929 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGGGGGAGAA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GTGGAGAA
* * *
19306994 CCTGACCGACGGCATTGGGGTTCCGGTGATC-GAGGGGCC-GGGGGGTGTGCACACATGATGTGC
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
19307057 GATGGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGCACTTGGC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * * *
19307122 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATGAAAGTATCTGAAATG
259 GCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19307187 GGGACACTTTTTTTAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* **
19307252 GTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* **
19307317 TTTTAAAAAATCCCGAACAGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19307382 CCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGTCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * ** * * * **
19307447 TGGCATGCAGAAATTTGAAGATGTGTATAGACCCACCAACCACCCTAGCGATCCATGACTTGCGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC-TCCACCCTATCGATCCACAACTTGCGC
* *
19307512 ATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCCCGCTCGTTTCTTC
647 ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCTGCCCGCCCGCTCGTTTCGTC
* * *
19307577 GGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGT
711 AGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * * * * *
19307642 AGGATCGATAGCGCGTAGAGGGGGACCCGATCGATCCCCAGCTTGGGCATCTCGCCCCTCTGGCT
776 AGGATCGATAGCACATAGAGGGGGACCCGACCGATCACCAGCTTGCGCATCCCACCCCTCTGGCC
* **
19307707 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTGTACAGAGTTCATTCCCAGTCTAA
841 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19307772 G
906 C
* * * * * * *
19307773 CATATGGAGTTCATTCCCAATCTAAGATCAAACTGAACTAAGGGTTGCAGCAGCACATGTTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGATGGGC
* * * ** *
19307838 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGAACCGTTACGGGAGCATCGTCGGAGA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGT-GGAGA
* * * *
19307902 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGTGGGGCCGGCGGGGTGTGCGCACATGATGTC
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19307967 CGATGGGTGCTGGCACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCAC
194 CGATGGGTGCTGGCACTTG-GCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19308032 AGCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 AGCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19308097 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* **
19308162 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
19308227 GTTTTAAAAAATCCCGAACCGTAAGAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAA-AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19308292 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
19308357 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGTCCACCCTATCGATCCACAACTTGCG
582 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC-TCCACCCTATCGATCCACAACTTGCG
* * * * *
19308422 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCG-C-CC-GCCCGCCTGTTCGTTTCGTC
646 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTGCCCGCCCGCTCGTTTCGTC
* * *
19308484 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGTGTTGCTGCA
711 AGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCA
* * *
19308548 GGCA-GATCGGTAGCACATAGAGGGGGACCTGACCGATCACCGGCTTGCGCATCCCACCCCTCTG
774 -GCAGGATCGATAGCACATAGAGGGGGACCCGACCGATCACCAGCTTGCGCATCCCACCCCTCTG
* * * *
19308612 GCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTC
838 GCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
19308677 TAAC
903 TAAC
* * * * *
19308681 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGATGGGC
* * *
19308746 TCGAGCATGTACTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCTGGAGAA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TGGAGAA
* *
19308810 CCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCC-GGGGGGGTGTGCGCACATGATGTG
*
19308875 CAATGGGTGCTGGCACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGCACTTGGCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19308940 AGCCCCTCAAAAAGCATCTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
258 AGCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19309005 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
19309070 TGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
19309135 ATTTTAAAAAATCTCGAACCGTAAAAAGTTGCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19309200 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19309265 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACAGCTTGCG
582 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT-CCACCCTATCGATCCACAACTTGCG
19309330 CATCCCGTCTCTCTTAG-CGGCGTAGTGCCCGCCC
646 CATCCCGTCTCTC-TAGCCGGCGTAGTGCCCGCCC
19309364 ACCTGCTCGT
Statistics
Matches: 1426, Mismatches: 149, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
907 115 0.08
908 692 0.49
909 144 0.10
910 7 0.00
911 465 0.33
912 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (906 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGATGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGCACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTCCACCCTATCGATCCACAACTTGCGCATCC
CGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTG
GCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
CGATAGCACATAGAGGGGGACCCGACCGATCACCAGCTTGCGCATCCCACCCCTCTGGCCGGCTG
AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAC
Found at i:19310145 original size:26 final size:26
Alignment explanation
Indices: 19310116--19310168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19310106 GTTGACTTAG
*
19310116 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
*
19310142 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19310168 G
1 G
19310169 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:19311732 original size:26 final size:26
Alignment explanation
Indices: 19311703--19311755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19311693 GTTGACTTAG
19311703 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
19311729 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
19311755 G
1 G
19311756 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:19312617 original size:26 final size:26
Alignment explanation
Indices: 19312581--19312633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19312571 GTTGACTTTG
* *
19312581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
19312607 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
19312633 G
1 G
19312634 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:19314367 original size:26 final size:26
Alignment explanation
Indices: 19314327--19314383 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19314317 ATGGGTTGAC
*
19314327 CTAAGCATACAGAGTTCTTTCCCAAT
1 CTAAGCATACAGAGTTCATTCCCAAT
* *
19314353 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAAT
19314379 CTAAG
1 CTAAG
19314384 GTCAGACCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAAT
Found at i:19316183 original size:25 final size:26
Alignment explanation
Indices: 19316135--19316186 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19316125 GTTGACTTAG
19316135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19316161 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19316186 G
1 G
19316187 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19316960 original size:900 final size:898
Alignment explanation
Indices: 19313469--19344430 Score: 28936
Period size: 903 Copynumber: 34.0 Consensus size: 898
19313459 TTTGGCAAAT
* * * * *
19313469 GGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGATTTCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
19313534 CATGTG-TCGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG-CTGGAGAACCT
66 CATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTC-GGAGAACCT
* * * *
19313597 GACC-AGCGGCATTGGGGTTCCGACTATCAGGGGGCTGGGGGGTGTGCACACATGATGTGCGATG
129 GACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
19313661 GGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19313726 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19313791 CACTTTTTTCAAATGGTCACAAAATCTAGTACAC-TCTGAGTTTTTAGCTGAATTGTTTTGTGCA
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19313855 TGACAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19313920 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19313985 TGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
19314050 CACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACTCTATCGATCGATGGCTTGCGTATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * * *
19314115 CCGTCTTTCTGGCCAACGTAGT----G-CCCGCCCACCCGTTCGTTTTGTCGGTTGGCTTAGGCA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
19314175 TACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTTGTGATAGCAAGATCGGTAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * *
19314239 ACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCT
776 ACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
19314304 GCACGCTCGTTTCATGGGTTGACCTAAGCATACAGAGTTCTTTCCCAATCTAAGCATAC
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
19314363 GGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGC-AGTAGCACATGCTAGGTTCGT
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* * * *
19314427 GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTG
* * ** *
19314492 ACCTG-CGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATG
130 ACC-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19314556 GGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCT
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19314621 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19314686 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19314751 GGCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-CCCTGAAAAAATTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTT
* * * *
19314815 TAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAACATAGAAAACGAGTCGTCTTCCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19314880 TGAAACTTCATGTGAAGGCTTAAGGGATCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
19314945 CACACAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATCGATCTACGACTTGCGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * *
19315010 TCGTCTCTCTGGACAACGTAGT----G-CCCGCCCGCCCGCTCGTGTCGTCGGTTGGTTTAGGCA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
19315070 TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAGACCAAGGGTTGTGGTAGAAGGATCGA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACC-G----GACCGAGGGTTGCGGTAGCAGGATCGG
* * * *
19315135 TAGCACATCGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
772 CAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
19315200 GCCAGCACACTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGCATAC
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19315263 GGAGTTCATTCCCAGTCTAAAAT-GAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGG
1 GGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* *
19315327 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTG
* ** *
19315392 ATCGGTGGCATTGGGGTTCCGACGATCGAGGTGGCCGAGGGGGTGTGCGCACATGATGTGCGATG
130 ACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATG
* *
19315457 GGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
19315522 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTG-CGTGAAATGGGG
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGG
19315586 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
19315651 TGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTAGAGCCAAAATTACTTCCAAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
19315716 TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19315781 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCAATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19315846 CATGCAGAAATATGATGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCGTGTGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
19315911 CCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGACCGCCCGCCCGCTCGATTT-GTCGGTTGGCTTA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--CCGCCCGCCCGCTCG-TTTCGTCGGTTGGCTTA
* * * ** * * *
19315975 GGCATATGGAGTTCATTCCCAATCTAAGATCAGACTGGATTGAGGGTTGCGGTAGTAGTATTGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
** * * *
19316040 AGCACACAGAAGGGGACCCAGTTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
773 AGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
19316105 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
19316167 GGAGTTC-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
19316231 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCACTGGAGCATCATCTGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * ** * *
19316296 CCGATGGCATTAGGGTTTCGGTGATCAGGGGGGCCAGGGGGTTTGCGCACATGATGTGCGATGGG
131 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* ** * *
19316361 TGCTGGTACTTGGCCCTTATATTCGCTGCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCA
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
19316426 TATAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
**
19316491 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTAAGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
19316555 CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAATTACTTCCGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * *
19316620 AAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
19316685 AACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCAAT-AAAATGGCATCGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * *
19316749 GTAGAAATATGATGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACGTGTGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
19316814 TCTCTCTGGCCGGCGTAGTGCCCGCCCGACCGCCCGCCCGCTCGATTCATCGGTTGGCTTAGGCA
650 TCTCTCTGGCCGGCGTAGTGCCCG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
19316879 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAGTAGTAGGA-CTGGCAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-GGCAGC
* * *
19316943 ACATAGAGGGGGACCCAGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
776 ACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19317008 GCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19317067 GGAGTTC-TTCCCAGTGTAAGATCGGACCAGACCAGAGGGTTACGGA-AGCACATTCTGGGCTCG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-GAGGGTTGC-GACAGCACATGCTGGGCTCG
* * *
19317130 GGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCT
* * ** * * * *
19317195 GACCGGCGGCATTGGGGTTTCGGTGATCGAGGGGGCCAGGGGGTTTGCACACATGACGTGCGATG
129 GACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19317260 GGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCAT-AAAACTCCAAGAACTCACACCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCC
* * *
19317324 CCATATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19317389 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19317454 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAATTACTTCCAAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
19317519 TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTCCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19317584 TGAAACTTCACGTGAAGGCTTATGGGACCATT-T-T--A--T----G-------AAT---A-T--
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
19317626 -A--C----------A-A---GCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19317674 CCGTCTCTCTGGCTGGCGTAGTGCCCGTCGGCCTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAG
647 CCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
19317739 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACAGCAACAGGATCGGTA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
19317804 GTACGTAGAAGGGGG-CCCGATCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
774 GCACGTAG-AGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * **
19317868 CTCGTACACTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATAC
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
19317930 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCACATGCTGGGCTCGAG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
** * *
19317995 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * * *
19318060 CCGACGGTATTGGGGTTCCGGCGATCGAGGGAGCCGAGGGGGGGTGTGCACACATGATGTGTGAT
131 CCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC---GGGGGGTGTGCGCACATGATGTGCGAT
* * *
19318125 GGGTGCTGGTACTTGGCCTTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19318190 CCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
19318255 ACATTTTTTTCCAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19318320 TGCCAACAAAAATATAAGGATCACGTCTACAAAGTTTGGGGCCAAAATTTCTTCCAAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19318385 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
19318450 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTAGAAGCCACAAAAATGGCATTGT
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ** * * *
19318515 TACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCGCGGCTTGCGTATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19318580 CCGTCTCTCTGGCCGGTGTAGTGCCCG-CACGCCCGTCTGCTCATTTCGTCGGTTCGCTTAGGCA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * ** * * * *
19318644 TACCTAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGAGTTGCGGCAGTAGGATTGGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * * * * *
19318709 TGCAAAGAGGGG-CCCAGCCGATCACCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGCGCCC
777 CGTAGAG-GGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19318773 GCACACTCATTT-GATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC
840 GCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
19318832 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * *
19318897 CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGCCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * *
19318961 ACCGACGACATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
19319026 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
19319091 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19319156 ACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * ** * *
19319221 GGAACAAAAACACAAGGATCACGTCTAAAAAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTT
389 CCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * *
19319286 AAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19319351 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19319416 ATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19319481 CGTCTTTTTGGCCGGCGTAGTGCCCG-CCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
19319545 ACAGAGTTCATTCCCAATCTAAGATCAGACAGGACCAAGGGTTGC-G--GCAGCAT-----G--C
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * * * *
19319600 --AGAGGTGGACACGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCTGT
778 GTAGAGGGGGAC-CCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
19319663 ACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATAC
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * **
19319720 GAAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGC-AGCAGCACTTAATGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* *
19319784 GCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCT
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCT
* * * * * *
19319848 GA-CTAGCGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGCAGGAGTGCACACTTGATGTACGA
129 GACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG--GGTGTGCGCACATGATGTGCGA
* *
19319912 TGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTGTCCCTCATCAAACCTCGAGAACTCACACC
191 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19319977 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAAATG
256 CCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATG
* *
19320042 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTAT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ***
19320107 GCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTGAAGAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * *
19320172 TTTTAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTG
449 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19320237 CCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19320302 TGGCATGCAGAAATATGAAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGG-TTCCG
579 TGGCACGCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
19320366 CATCCTATCTGC-CTGGCCGGCGTAATGCCCACCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
643 CATCCCGTCT-CTCTGGCCGGCGTAGTG-CC-CGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * * *
19320430 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCAGACTGAAGGTTACGGCAGTAGGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * * * * * *
19320495 CGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTACGCATCTCACCCCTCTGGCCGACTG
769 CGGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
19320560 AGCGTCCGCACGCTCGTTTCGTGGGTTGAGC-TAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
833 AGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
19320623 -C
897 AC
* *
19320624 -GA----A---CC-G-----GAT------TGA--GA--GTTGCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * * * * *
19320665 CATGTGTTGGTGTCACCTTTTTCTTCGTCAGGGCACCATC-GTCGGAGCATCGCCAGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * * * * * *
19320729 ATCGGCGGCATTGGGGTTCCGACGATCAGGGGCCCGGGGGGTGTGTGCACATGGTGTACGATGGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
** * *
19320794 TGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAGTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
19320859 TAAAGAGCATTTGAGATTTTATAGTTTTACTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** *
19320924 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGCTTTATGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
19320989 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** ** * * *
19321054 AAAATCCCCAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTTGTCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
19321119 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19321184 GCATAAATATGAAGGTTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * ** **
19321249 TCTCTCTGGCAGGCGTTGTACCCGCCCACCCGCCCGTACGCTCGTTTCGTTAGTTGGCTTAGGCA
650 TCTCTCTGGCCGGCGTAGTGCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
19321314 TACGGAGTTCATACCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGTACCAGGATCGACAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * *
19321379 CGTAGAGGGGGAACCAG-CTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCC
777 CGTAGAGGGGG-ACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19321443 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATAC
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19321502 GAAGTTCATTCCAAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGCACAAGCTGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
** * *
19321567 CATGTGCTGGTGCCGCATTTTTCTTCACCCGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
*
19321632 CC-AGCGGCATTGGGGTTCCGACGATCAGGGGGGCGGGGGTGGGGGGTGTGCGCACATGATGTGC
131 CCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGC-----CGGGGGGTGTGCGCACATGATGTGC
* *
19321696 GATGGCTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
19321761 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19321826 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19321891 GCATGCCAACAAAAATAAAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
19321956 ATTTAAAAAATCCC-AAGCCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
449 TTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
19322020 GCCTTGAAACTTCACGTGAAGGCTTAAAGAACCATTGTAAGAATTTACAGGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19322085 TTGGCACACA-AAACTATAAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 TTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19322149 GCATCTCGTCTCTTTGGCCGACGTAGTGTCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
642 GCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCGG
* * *
19322214 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGGCAAC
700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGC
* * * * * *
19322278 AGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTTTGGCC
764 AGGATCGGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
19322343 GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19322408 GCATAC
893 GCATAC
* * * * * * *
19322414 GGAGTTCATCCCCAGTCTAAGATCAGATCAGACCGAGGGTTAC-AGTAGAACATGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* * * * * * * * *
19322478 GCATTTGCTGGTGTCACAATTCTCTTCGTCAGGGCACCATCGCTGAAGCATCGCCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTG
* * * *
19322543 ACCGACGGCATTGAGGTTTCGACGATCAGGGGGGCCGGCGGGTGTGCGCACATGATGTGTGATGG
130 ACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19322608 GTGCTGGTACTTGG---------T---CCCCTATCCCTCATCATACCTCGATAACTCAC-CCCGT
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-C
19322660 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
19322725 CACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGTTTTTAGCTGAATTTTTTTATGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19322790 ACCAACCAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19322855 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
19322920 GAAACTTAACATGAAGGCTTAAGGGACCATTCTATGAGTTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
19322985 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19323050 CGTCTCTCTAGCCGGCGTAGTACCCGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 CGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
19323115 CATACGGAGTTGATTCCCAGTCTAAGATCGGACCAGACCGAGAGTT-CTGGCAGTAGGATCAGCA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GGTAGCAGGATCGGCA
* * * * * * *
19323179 GCATGCAGA-GGGGACTCGGTCGATCCTCAGCTTGGGCATCCCGCCCCTCTGGCCGACTGAGCGC
774 GCACGTAGAGGGGGAC-CCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-
* *
19323243 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCTAGTCTAAGCATAC
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19323305 AGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCAAAAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
** * ** **
19323369 CATGTGCTGGTGCCGCATTTTT-TTCACCGGAGCACCATCGTTGGAGCATCACCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * * *
19323433 CCGACGGCATTGGGGGTTCTGACGATTGGGGGGTC-GGGGGTGTACACACATGATGTGCGATGGG
131 CCGACGGCATT-GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
19323497 TTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
19323562 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19323627 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTGGCTGAATTTTTTTGTGCACGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
19323692 CAAAAAAAATAAAAGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
19323757 AAAATCCC-AAGCCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCTTG
455 AAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* ** * *
19323821 AAACTTCACGTGGAGGCTTAAAAGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19323886 CACA-AAACTATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
584 CGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19323950 CGTCTCTCTGGTCGGCGTAGTGTCCG-CCAGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** ** *
19324014 ACGGAGTTCATTCCCGGTCTAAGATCAGACTAGATAGAGGGTTGCGGTAGCAGGATCGGCGGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
** * * * * * *
19324079 GTAGAGGCAGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTCGCCGACTGAGTGTCCGC
778 GTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
19324144 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
19324201 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * * * **
19324266 CATGTGTTGGTGCCGCATTTTTCTTCCTCGGGGCACCATC-GTCGGAGCGTTGCCAAAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * ** *
19324330 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCGGGGGGGTGTATGCACATGGTGTGCGATGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
** * * *
19324395 GTGCTGGTACTTGGAACTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAAGTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
19324460 TTAAAGAGCATTTGAGATTTTATC-GGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 TTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* ** *
19324524 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGCTTTATGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
19324589 GCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** ** * *
19324654 AAAAAATCCCTAACCACAAAAAGTTTTGAAAATCGTGAAAAATA-AAAACGGGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19324718 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGCCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19324783 ATGCATAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * *
19324848 CATCTCTCTGGCAGGCGTTGTACCCG-CCCGCCCGCACGCTCGTTTCGTCAGTTGGATGAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
19324912 ACGGAGTTCATACCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGTACCAGGATCGACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * *
19324977 GCAGAGGGGGAACCAGGT-GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCG
778 GTAGAGGGGG-ACC-CGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
19325041 CACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATAC
841 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19325099 GAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGA-GGTTACGACAGCACAAGCTGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * **
19325163 CATGTGCTAGTGCTGCATTTTTCTTCACCGGGGCACCATCA-TCGGAGCATCGTCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* *
19325227 ACC-AGCGGCATTGGGGTTCCGATGATCGGGGGGGTCGAGGGTGGGGGGTGTGCGCACATGATGT
130 ACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGG-C-----CGGGGGGTGTGCGCACATGATGT
*
19325291 GCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19325356 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19325421 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19325485 GTGCATGCCAACAAAAATAAAAGGATCATGTTTACCAAGTTTGTGGCCAAAACTCCTTCCGAAAA
382 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19325550 AATTTTAAAAAATCCC-AAGCCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTC
447 AATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19325614 TTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19325679 CATTGGCACACA-AAACTATGAAGATATGCTTAAACCCACCTACCATCCTATCGATCCACGGCTT
576 CATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19325743 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGTCCG-CCCGCCCGCCCGCTCGTTTCATCGGTTGGC
640 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
19325807 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAGCAGGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC
** ** * * **
19325872 GGTGGCACGTAGAGGTAGACCCGGCCAATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
770 GGCAGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19325937 GCGCCCGGACGCTCGTTTCGTGGTTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
19326002 GGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * **
19326067 CATGTGTTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCA-TCGGAGCATTGCCAAAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * * * *
19326131 ATCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCGGGGGGTGTGTGCACATGGTGTGCGATGGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* ** * * * *
19326196 TGCTAGTACTTGGAACTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAAGTCACACCCCTT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19326261 TAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19326326 CTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
19326391 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTTTCGAAAAAATTTTA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTA
**
19326455 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19326520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** ** *
19326585 CATAGAAATATGAAGATGTGCCTAAACCCACCTATAACCCTATCGATCCATGGCTTGCGCATCCC
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
19326650 GTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCTGCCTGCTCGTTCCGTCGGTTGGCTT
649 GTCTCTCTGGCCGGCGTAGTGCCCG-C--CCCGCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTT
* **
19326715 AGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCGGACCGAGGGTTGCTGCCGCAGGATCG
707 AGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * * * *
19326779 ACAGCATGCAGAGGGAGACCCGACCGATCCCCGGCTTTCG-ATCCCGCCCCTCTGGCCGGCTGAG
771 GCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19326843 TGGCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTA-TCTAAGCATAC
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATAC
* * * * * *
19326907 GGAGTTCATTCCTAGTGTAAGATCAGACAGGAACGAGGGTT-CGACAGCACATGCTGGGCTCTGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * *
19326971 CATATGCTGGTGCCGCATTTTTATCCGTCGGGGCACCATCA-TGGGAGCAACGCCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * * *
19327035 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCGCATGATGTGCAATGGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
19327100 CGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
19327165 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19327230 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATGTTTTTGTACATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *** *
19327295 CAAGAAAAAATACAAGGATCATGTCTACCAAGTTTGTTCCCAAAACTCCTT-CGAAAAAACTTTA
390 CAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
19327359 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19327424 AAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 AAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19327489 ATGCAGAAATGTGAAGATGTGCCTAAAACCACCTACCA-CCTATCGATCCATGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19327553 CGTCTCTCTGGCCGACGTAGTGCTCG-CCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
19327617 ACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTGGTAGGATCGACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * *
19327682 GTAGAGGGGGACTCGGCCGTTCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGC
778 GTAGAGGGGGAC-CCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
19327747 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
19327802 -G-G---------A---T----T------GGACCGAGGGTTGTGGCACCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
19327843 CATTTACTGGTGCCGCATTTTTCTTCGTCGGGGAACCATC-GTCGGAGCATCGTCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * * * *
19327907 ACCGGCGACATTGGGGTTCCGACGATC-GGGGGCTGGGGGGTATGCGCACATGATGTACGATGGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
19327971 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
19328036 TAAAGGGCATTTGAGATTTTACAGGTTTGCTGCAAGTACCCATTAATGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19328101 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTATGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * ** *
19328166 CAAAAAAAATACAAAGATCAAGTCTGCCAAGTTTGGGGCCAAAACTCCTTTTGAGAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * * *
19328231 AAAATCCAAAACCGTAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCTTGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19328296 AACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCAC
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19328361 ACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGGCTTGCGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
19328426 TCTCTTTGGCTGGCGTAGTGCCCG-CCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATAC
650 TCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * * *
19328490 GGAGTTCATTCTGAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGTAGGATTGGCCGCACGA
715 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGT
* * * * *
19328555 AGAGGCGAACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTAC
780 AGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
19328620 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
844 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
19328675 GAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
19328740 CATGTGTTGGTGCTGTATTTTTCTTCGTCGGGG------CAC-----CATCGTCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * *
19328794 CCGGCGGTATTGGGGTTCC-AGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGA
131 CCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19328858 GTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
19328923 TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT-GGGA
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGA
19328987 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ** * *
19329052 GCCAAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGATCAAAACTCCTTCTGAGAAAATTT
388 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * *
19329117 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATTAAAAAAAAAAAACGAGTTGTCTTGCCT
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19329182 TGAAACTTCACGTGAAGGCTTAAATGG-CCATTGTAAGAATTTACAGGCCATAAAAATGGCATTG
517 TGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
19329246 GTA-GACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTA
581 GCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
19329310 TCCTGTCTCTCTGGCCGACGTAGTGCCC-ACCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGG
645 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * *
19329374 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGATAGCAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* ** * * * *
19329439 CACATAGAGGCAGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAACGCC
775 CACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
19329504 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
19329564 GGAGTTCATTCCCAGTCTGAGATCAGACTGGATCGAGGGTTACGGCAGCACATGATGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * *
19329629 CATATGCTGGTGCCGCATTTTTTTTCGTCGGGG---CA-C-C----G--TCATCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * *
19329683 CCGGCGGTATTGGGGTTCC-AGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
131 CCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * * *
19329747 AGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19329812 CTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAAT-GGG
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGG
19329876 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *** ** * *
19329941 TGCCAAGAAAAATACGAGGATCACATCTACCAAGCTT--GGTCATGTGCTGGTGCCG----CATT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATT
****** ** * * *** * * * * ****** * *** *
19330000 TTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAA-CCTGACCGGCGGCATTGGGGT--
451 TTAAAAAATC-CCGAACCGT-A-AAAAG--T-TTC-AAAAATCATGAAAAATAGAAAACGAGTCG
* * ****** ** ** * **
19330062 TC-CGACGATCGGGGGGGC-CG-GGGGGGGT--GTGCACACATGATGTGCAATGGGTGCTGGTAC
509 TCTTG-CCAT-GAAACTTCACGTGAAGGCTTAAG-GGAC-CAT--TGT---ATGAAT--T--TAC
** * * * * ** ** * * * ** ** * *
19330122 TTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCG-AGAACT--C-ACACCC-CCTTAAA
561 -AAGCCATAAAAATGG--CATTGGCACGCA-GAAATAT-GAAGATGTGCCTAAACCCACC-T-AC
* * * * * * * ** * * *** * * * *
19330182 GAGCATTTGAGATTTTACAC-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTT
619 CACCCTAT-CGA---TCCACGGCTTGC-G-CA-T--CCCGT---CTCTCTG-GCCGGCG-TAGTG
**** *** ** * **** * * * ***** * *
19330246 TTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGTT--TTTAGCTGAATTTTTTTGTACA-TG
670 CCCGC-CCCGCCCGCCCGCTCGTT-T---CGTCG-GTTGGCTTAG--GCA-TACGGAGTTCATTC
* * * * * * * * * ** * * ** ** **
19330307 GCA-ACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACGCTTTGCAAAAAAAATT
726 CCAGTCTAAGAT-C-A-GA-C-CG--GACCGAGGGTTGCGG-TAGCAGGATCGGC----AGCACG
* **** * **** ** *** ** ***** * **** *
19330370 TAAAAAATCTTGAACCGT--A-AAAAGTTTTGAAAATCGTG-AAAAATAGAAAAC-GAGTCGTCT
779 T---AGAGGGGGACCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CG-CC
* * **** ** * * * * ** *
19330430 TGC-CG-T-GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
839 CGCACGCTCG---TTTCGTGGGTTGACTT-A-GG--CA-T--ACGGAGTT-CATTCC-----CA-
* * *
19330492 GACATTGGAACACAGAAATAT
887 GTC--T-----A-AG-CATAC
** * ** * ** * * * *
19330513 GAAGATGTTCCTAAACCCA-CCTACCACCCAATC-GATCC-ACGGCTTGCG-CATCCCAT-CT--
1 G--GA-GTT-C-ATTCCCAGTCTAAGATCGGACCGGA-CCGA-GGGTTGCGACAGCACATGCTGG
* * * * * * * * ** * *** * *
19330571 -CTCTGGC-CG-GCGTAGTGCCCGC---CTAC-CCGCCCGCCCACC--CGCTTGTTTCGTCAGTT
59 GCTCGGGCATGTGC-TGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCAC-TGGAGCATC-GTC
* * * * *** * * *** * * * *
19330627 GGCTTAG-GCAT-A-CGAAGTTCATTCCTAG-T-CTAAGATCAAACCGGACCGAGGGTTGAGACA
120 GG---AGAACCTGACCGACG-GCATT-GGGGTTCCGACGATC--GGGGGGCCGGGGGGTGTG-C-
* * * ** * * * *
19330687 GCAAGATCGATAGCATGCAGA-GGGGGACCCGGT-C--GATCCTCGACT-TTCGCATCCC-ACCC
176 GC-ACAT-GAT-G--TGC-GATGGGTG--CTGGTACTTGGCCCT-TA-TATTGGC-CCCCTATCC
** * * * ** * * * * ** *
19330746 CTC-TGGCCGA-CT-GAGCACCCGCACGCTCATTTCATG-G--GTT--GA-CTTAC--GCATAC-
230 CTCAT--CAAACCTCGAGAACTCACAC-C-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * ** ** * *
19330799 G-GAGT--TCATTCCCA--GTCT-AAGCATACGG--A-TTTCATTCCAAGTATAAGATCA-AACA
291 GCCAGTAGCCATT-AAAGTGTCTGAA--ATGGGGACACTTT--TTTCAA--AT--GGTCACAA-A
* * *** ** ** ** ***** ****
19330854 AGGC-T-CAGGGTTGCG-GCCGTACATGCTGGGCTCAGGCATGTGCTGATGCC-ACATTTTTCTT
346 A-TCTTGTACACTT-CGAG-TTTTTA-GCT-GAAT-TTTTTTGTGC--ATGCCAACA---AAAAT
* ** * * * * * * * ***** ****
19330915 CGTCGGGGAACCATCGTCGGAGC-A--TCGTCGG--AGAA--CCTGACCGGCGGCA--TT-GGGG
400 --ACAAGG-ATCA-CGTC-TACCAAGTTTG-GGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAA
* * * **** * * ** * * **** * * *
19330970 TTCCGGCGATCGGGGGTCAGGGGGCGTGCGCACATGATGTGCGAT-G----GGTGCTGGTACTTG
458 ATCC--CGAAC---CGT-AAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAG-TCGT-CTT-
* * * * * *** * **** * * ** *
19331030 GCCCTTATA-TTGGCTCCCT-ATCCCTCATCAAACC-TTG-A-GAACTCACACCCCTTAAATAGC
513 GCCATGAAACTT--C-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA-A--
* * *** * * *** ***
19331090 ATTTGAGATTTTACAGGTTTGC-TGTCAGTAGCCATTAA-A-GTGTCTGAAATGGGGACACTTTT
572 A--TG-G------CA--TTGGCACG-CAG-AAATATGAAGATGTGCCT-AAA--CCCAC-CTACC
***** * *** * ** * * * ***** * ***
19331152 TTGAAAT-GGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGACTTTTTTTGTGTATGCCAAC
620 ACCCTATCGATC-C-ACGGCTTGCGCA--TCCCGTCTCT--CTGGCCGGCGTAGTGCCCGCC--C
****** ** * * *** * ** *** * * **** *** *
19331216 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACACCTTGCAAAAAAATTTGAAAAAA
677 -CGCCCGC-CCG--CTCGT-TTCGTCGGTTGGCTTAGGCATA-C--G-GAGTTCA-TT--CCCAG
* * ** **** *** * * * *
19331281 TCTTGAACTG-TTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
730 TC-T-AA--GATCAGACCGGACCGAGGGTTGCG----GTAG--CAGGA-TCG----G-CA-G---
* * **
19331345 CTTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTG-GCAT
775 ---CACGTAG-AGG-----GGGACC--CGT-CG-A--T-C----C------CCGGC-TTGCGCAT
* * *** * ** * * * * * * * *
19331408 GCAG-AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCGTCCC
813 CCCGCCCCTCTG--GCCG-G-CTGAGCGC-CC--GCACGC--TCG-T---T-TCGTG-G-GT--T
* * * * * * *
19331472 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCTGT-TCATTTCGTCGGTTGGCTTAGG
860 GACT-T-AGG-C-A--TA-----CG---G--AG-T-TCAT-TCCCA--------G-T--C-TAAG
19331536 CATAC
894 CATAC
* * * * *
19331541 GGAGTTCATTCCTAGTGTAAGATCGGGCCGCACCGAGGGTTCCAGCAACAGGATCAACA-GCACG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT---GCGACA-G--C-ACATG--C-
* * * *** * *** * *
19331605 TAGAGGGGGACTCGGCCGATCCTCGACTTGCGCATCCCGCCGCTCTGGCCGGCTGAGCGC-CCGT
56 T-----GGG-CTCGGGC-AT-GT-G-C-TG-G--TGCCGCATTTTTCTTCGTC-G-GGGCACC--
* * * * ** * ** ** * *
19331669 ACGCTCGTTTCATGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCAAAGCATACAGAGTTGA
103 A---TC---AC-T-GG-AG-C--A-TCGT-CGGAGAACCTGACC-G--ACGGCAT--TG-G--GG
* ** * * * * * *
19331734 TTCCCCGTCTAAGATCGGACCGGACTGAGGGT-TGCGGAAGCACATGCTGGGCTCGA-GCATGTG
146 TT--CCG---ACGATCGG-GGGGCCGGGGGGTGTGC----GCACATGATGTG--CGATG--GGTG
* * * ** * * * * * * * * * *
19331797 CTGATGC--CGCATTTTTCTCTGCTGGGGCACC-AT-CGTCGGAGCATCACC-GGTGAAC-CAGA
197 CTGGTACTTGGC--CCTTATAT--T-GGCCCCCTATCCCTC--ATCA-AACCTCGAGAACTCACA
* * ** **** * ** * *
19331856 CCGACACCATT--GGGGC-TCCGATGATCGGGGGGCCGGGGGGTGGGC-GCACATGATGTGCGA-
254 CC--C-CC-TTAAAGAGCATTTGA-GAT----TTTAC---AGGTTTGCTGC-CA-G-T-AGCCAT
** * * * * ** ** * * **
19331916 T-GGGTG-CTGGTACT-TGG-CCCTTATATTGGCTGCCTATCCCTCATGAAACGTCAAGAACTCA
303 TAAAGTGTCT-GAAATGGGGACACTT-T-TT---T-CAAAT-GGTCA-CAAA-ATCTTG---T-A
* * * * * * **** ** *
19331977 CACCCCCTTAAAGAGCATATGAGATGTTACAGGTTTGCTGCCAGTAGCC-ACTAAAGTGTCTAAA
354 CA----CTT--CGAG-TTTTTAGCTG-AATTTTTTTG-TG-CA-T-GCCAAC-AAA---AATACA
* * ** * * *
19332041 ATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTAAAT
403 A---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A---AAA-
* ** *
19332101 TTTTTTGTGTATGCCAAATAAAATACAAGGATCACGTCCAAAAATTTTGGGGCTAAAAATCCTTC
448 ----AT-T-T-T----AA-AAAAT-C-CCGAAC-CGT--AAAAA-------G-------T--TT-
*
19332166 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAG
479 C------------AAAAAT-------C------A---T-GAAAA--AT--A-----GAAAACGAG
* * * *
19332231 TCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAC
506 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19332296 AATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAAG
571 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
19332361 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCACGCACGCCCGCCCGCTCGTTT
636 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGC-C-C-CGCCCGCCCGCTCGTTT
* * * * * *
19332426 CTTCGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATC-GAACCGAACTGCGGGTTGC
694 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGC
* * * * * * * *
19332490 AGCAGAAGGATTGGCAGCACGTAGAGCGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCAT
758 GGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCC-C
* * *
19332555 TCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCT
821 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
19332620 AGTCTAAGCATAT
886 AGTCTAAGCATAC
** * ** * **
19332633 GGAGTTCATTCCCAGTCTAAGATC-G-CTAGACCGATGGTAACGGCAGCACATGCTGGTTTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* ** *
19332696 CATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTTGAAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * *
19332761 CCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGC
131 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
19332826 TGCTGGTACTTGGCCCTTATATTGG-CCTCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19332890 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19332955 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
19333020 CAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * *
19333085 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
19333150 AAGTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAC
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19333214 ACAAATAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
585 GCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19333279 GTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCCGCCTGCCCGCCCGCCCGCTCATTTC
649 GTCTCTCTGGCCGGCGTA--G--T------------GCCCG-C--CCCGCCCGCCCGCTCGTTTC
* * * *
19333344 ATCGGTTGGTTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGG
695 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * * * *
19333409 CAGCAGGATTGGCAGAACGCAGCGGGGGACCCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCT
760 TAGCAGGATCGGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * *
19333474 GGCCAGTTGAGCACCCACACGCTCATATT-TTGGGTTGACTTAGGCATACGGAGTTCATTCGCAG
824 GGCCGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
19333538 TCTAAGCATAT
888 TCTAAGCATAC
* * ** * * ** * *
19333549 GGAGTTCATTCCCAGTCTAAGATCAGATCGGGTCGAGGGTTGTGGCAGCACATATTGGCCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * * * *
19333614 CATGGGATGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* *
19333679 CCGGCGGCATTGGGGTTCCCG-CGATCGGGGCGCCGTGGGGGTGTGCGCACATGATGTGCGATGG
131 CCGACGGCATTGGGGTT-CCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGG
19333743 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
19333808 TTAAA-AGAAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 TTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19333872 CATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
19333937 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * * *
19334002 AAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAC
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * * *
19334067 GAAACTTCACGTGATGTCTTAAGGGGCCATTGTATCAATTTACAAGCCATAAGAATGCCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19334132 ATGCAGAAATATGAAGATGTGCATAAACCCACCTGCCACGCTATCGATCCACGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19334197 CGTCTCTCTAGCCGGAGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCATAGG
648 CGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** ** *
19334262 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATTGAGGGTTGCGACAGCAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * * * * *
19334327 CACGCAGAGGAGGACCCAGTCGATCCCCGGCTTGCGTATCCCACCCATATGCCCGGCTAAGCGCT
775 CACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19334392 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGCGTTCATTCCCAGTCTAAGCAAAC
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
19334452 AGAGTTCATTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTACGGCAGCACATGCTAGGCTTGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * * * *
19334517 CATGTGTTGGTGTCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACTTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * *
19334582 TCGGCGGCATTGGGGTTTCGACGATCGGGGGAGCCGGGGGGTGTGCCCACATGATGTGCGATGGG
131 CCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
19334647 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19334712 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAATGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19334777 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * **
19334842 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATTTTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * ** *
19334907 AAAAACCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATAAGTCATCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
19334972 AACTTGACATGAAGGGTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATGGCATTGGCA
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCA
*
19335036 CGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19335101 GTCTCTCTGGCCGGCGTAGTACCCGCCCGCCTGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGC
649 GTCTCTCTGGCCGGCGTAGTGCCCG-CC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
19335166 ATATGGACTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGAG-AG
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-GCAG
* *
19335230 CACGTAGAGGGGGACCCGTTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGCCTGAGCGCC
775 CACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19335295 CTCATGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19335355 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCCGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
** * ** * * *
19335420 CATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATTGCCGGAGCATCATCGAAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * * * *
19335485 CCGGCAGCATTGGGGTTCCGGCGATCGGGGGGTCTGGGGGGTGTGCGCACATGATGTGCAATGGG
131 CCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
19335550 TGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC-CCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
19335614 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19335679 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
19335744 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
19335809 AAAATCCCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATTA-AAAACAAGTCGTCTTGCCATG
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAGTCGTCTTGCCATG
* *
19335873 AAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
519 -AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19335938 ATGCAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCCAGCGATCCACGGCTTGCGTATC
583 ACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
19336002 CTGTCTCTCTGGCCTGCATAGTGCCCG-CCCGCCCGTCCGCTTGCTCGTTTCATCAGTTGGCTTA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTA
*
19336066 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * ** * * * *
19336131 AGCACGCAGAGGGGGATCCGACCGATCCCCAACTTGTGCATCCCGCCCCTTTGGCCGGCAGACCG
773 AGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * *
19336196 CCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCCAAGCATAC
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
19336258 GGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGATAGGACATGCTGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * *
19336323 CATGTGCTGGTGCCTCATTTTTCTTCGTCAGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGTCGGAGAACCTG
* * * * * ** *
19336387 ATCGGCGGCATTGGGTTTCTGGCGAAAGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGATGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGG
* *
19336452 GCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19336517 TTCAAAGA-AATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
259 TT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19336581 CACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19336646 GACAAAAAAAATACAAGGATCACG--T--C---TTT-GGGTCAAAACTCCTTCTGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * **
19336703 AAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19336768 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
**
19336833 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19336898 CGTCTCTCTGGCCAGCGTAGTACCCG-CCCGTCCGGTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCG-CC---CGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** *** *
19336962 GCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAACAGCAGGATTGAG-
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-GC
* * * * *
19337026 AGCACATAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGAG
773 AGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** *
19337091 CCCTAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * **
19337153 GGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCCAGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * ** * ** *
19337218 CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGCCACCATTGCCGGAGCATCACCGAAGAACCTG-
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* ** *
19337282 CCGACGGCA-TGAGGGTTCTGGTGATC-AGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CCGACGGCATTG-GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* **
19337345 TGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19337410 TAAAGAGCATTTAAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19337475 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCTTGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
19337540 CAA-AAGAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
390 CAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * *
19337604 AAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19337669 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
19337734 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGT-GATTCACAGCTTGCGCATCC
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCC
* * * * **
19337798 TGTCTCTCTAGCCGGCGTAGTGCACG-CCCGCCCGCCCGCCTGTTCATTTCGTTAGTTGGCTTAG
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCG-C---TCGTTTCGTCGGTTGGCTTAG
** * * * * * **
19337862 GCATACAAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACAGCAGCAGGATCGATA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * **
19337927 GCACGTAGAGGGGGACCCGACTGATCCTCGACTTGCGTGTCCCGCCCCTCTGGCCGGCTGAGCGC
774 GCACGTAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19337992 CCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * **
19338053 GAAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCGATAGCACATGCTGGGCTCAAG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* *
19338118 CATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * **
19338183 CTGGCGGCATTGGGGTTCCGGTGATCGGGGGGACCAGGGGGGTGTGCGCACATGATGTGCGATGG
131 CCGACGGCATTGGGGTTCCGACGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGG
*
19338248 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19338313 TTAAA-AGGAATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 TTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19338377 CACTTTTTTCAAATGG-CGACAAAATCTTCTACTCTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
323 CACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19338441 TGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *** * *
19338505 TAAAAAATCTCGAACCGCAAAAAGTTTTGCAAATTATGAAAAATAGAAAACGAATCGTCTTGCCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
19338570 TGAAAATTCAAGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATGAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
19338635 CATGCAGACATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCATT
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** *
19338700 CTGTCTCGCTGGCTTGCGTAGTGCCTGTCCGCC-CACCTGCCCGCTCGTTTCGTCGGTTGGCTTA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCGC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
19338764 GGCATACAGAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAACAGGATCGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * * *
19338829 AGAACATAGAGGGGGACCCGTTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAACG
773 AGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
19338894 CCCGCATGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATAT
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
19338956 GGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTCCTTGTCTAAGATCGAACCGGACCAAGGG
1 GGAGTTCATTCCCA--GT---C-TA---AG---A-------TC---G---G-ACCGGACCGAGGG
* * * ** * ** * * * * * *
19339021 TTACGGTAGTAGGATCA-GCTGCACGTAAAGGGGGACCCGT-CCGAT-CCCCGACTTGTGCATC-
40 TTGC-G-A-CAGCA-CATGCTGGGC-T----CGGG-CATGTGCTGGTGCCGC-A-TTTTTCTTCG
*** * * * * * * * ** **** *** *
19339082 TCGCCCCTCTAGCCGGCTGAGTGC-CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
93 TCGGGGCACCA-TC-ACTG-GAGCATCG-TCG-GAG-AACCT-GACCGAC---GGCAT-TGG-G-
* * ** * *** * * *
19339146 TCATTCCCAGTCTAAGCATACGAAGAACCTGACCGACGGCATTAGGGT-T-CTGGTGATCAGGGG
145 --GTT-CC-G---ACG-AT-CG--G---GGGGCCG--GG-----GGGTGTGC-GCACATGA-TGT
** * * ** *** *
19339209 GCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCT
187 G-CGATGGGTGCTG-GTAC-T--TG-GC-------CCTTATA-TTGGCC-CCCTA-T--CCCTC-
*** * * * * * *** * *
19339273 ATCCCTCATC-A-AACCTCGAGA---ACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGT
233 ATCAAACCTCGAGAA-CTC-ACACCCCCTTAAAGAGCATT--TGAG-ATTT-------TACAGGT
* * *
19339333 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTTCAAATGGTCATAAAATAT
286 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCT
19339398 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAAGGATCACGTC
350 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTC
* * * *
19339462 TGCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTT
414 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
19339527 CTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGA
479 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
19339592 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
544 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * *
19339657 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCA
609 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-
* * *
19339722 CCCGTCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAG
673 GCC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * **
19339787 ATC-GAACCTGATCGAGGGTTACTGCAACAGGATCGGCAACACACAGAGGGGGACCCGGTCGATC
736 ATCAG-ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GTCGATC
* * * * * * *
19339851 CTCAGCTTGCGCATCCCG-CCCTCTGGCTGGCTGAGTGCCCGTATGCTCGTTTCATGGGTTGACT
799 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
19339915 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAG
864 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19339950 GGAGTTCATTCCCAATCTAAGATTGGACCTGACCGAGGGTTGCGGCAGTAGATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * **
19340015 CATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCAACGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * ** * *
19340080 CCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTTCGATGGG
131 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * *
19340145 TGCTGTTACTTGGCCCTTATATTGGCCACCTATCCCTTATCAAACCTCAAGAACTCATACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19340210 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19340275 CTTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATG
325 C-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
19340340 CCGACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * **
19340405 AAAAATCCCAAACTGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAATAAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19340470 AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAAAGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19340535 CACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
19340600 GTTTCTTTGGCCGACGTAGTGCCCACCTGCCCGCCCAGCCCGCTCATTTCATCGGTTGGCTTAGC
649 GTCTCTCTGGCCGGCGTAGTGCCC-GC--CCCGCCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * **
19340665 CATACGGAGTTCATTCCCAGTCAAAGATCAAATCGAACCAAGGGTTGCAGCAATAGGATCGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
** * * * *
19340730 CACACAGAGGGGTACCCGGTCGATCCCCGGCTTGTGCAT-----CACTCTAGCCGGCTGAGCGCC
775 CACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
19340790 TGCACGCTCGTTTCGTGCGCTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATAC
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** * *
19340849 GGAGTTCATTCCCAGTGTATGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
** * * ** **
19340914 CATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGTGTCACCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
* * *
19340979 CCTG-CGACATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATG
131 CC-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATG
19341043 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
19341107 GTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAATGTCTGAAATGGTGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19341172 C-TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TAGCA
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCA
* *
19341235 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** * * * *
19341300 TAAAAAATTCTGAATAGTAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTACCA
452 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19341365 TGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
19341430 TATGCAAAAATATGAAGATGTGCCTAAGCCCAGCTATCACCCTATCGATCCACGGCTTGCGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19341495 CCGTCTCTCTGGCCTGCGTAATGCCCG-CCCGCCCGTCGGCCCGCTCATTTCGTCGGGTGGCTTA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCG-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * *** * * * *
19341559 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTATAGCAGTAGAACCGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
** * * * * *
19341624 AGCACACAGAGGGGGACCCGGTTGATCCCCGGCTTACGCATCCCACCCTTCTGGCCGGCTGACCG
773 AGCACGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
19341689 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
19341749 ---G---A-T-----TC----A---GACC--A---AGGGTTAC-AGCAGCACTTACTAGGCACGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* * * * * * * *
19341789 GCATGGGCCGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGAAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTG
* *
19341854 ACCTG-CGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATG
130 ACC-GACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * ** *
19341918 GGTGCTGGTACTTGGCCCGTATAATATCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19341983 TTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
19342048 CAATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTACAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * * *
19342113 GCCAGCAAAAATACAAGTATCATGTCTACCTAGTTTAGGGCCAAAATTCCTTCTGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * * *
19342178 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGGGTCATCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19342243 GAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAAGTCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** *
19342308 ATGTAGAAATATGAAGATGTGCCTAAACGTACCTACCATCCTATCGATCCACGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19342373 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCCG-TCGCTCTTTTCGTCGGTTGGCTTAGGCAT
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * **
19342436 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGAATCAACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * *
19342501 GTAGA-GGGGTCCTGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
778 GTAGAGGGGGACC-CGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
19342565 ACGCTCGTTTCATGGGTTGACTTAGGTATAC-GAGTTCATTCCAAGTCTAGGCATAC
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19342621 GGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGGGGCAGCACATGCTAGGCTTGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * **
19342686 CATGTGCTGGTGCCACATTTTTCTTCGT-TGGGCACCATCTCCAGAGCATC-TCCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGT-CGGAGAACCTG
* * * * *
19342749 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGCGGTCGGGGGGTGTACGCACATGATGTGTGATG
130 ACCGACGGCATTGGGGTTCCGACGATC-GGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
19342814 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * * *
19342879 TTTTAAGAGCATTTGAGATTTTACAGGTGTGCTGCCAGTAGCAATTAAAGCGTCTAAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19342944 CACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19343009 GCCAAC-AAAATTCAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCTGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** * *
19343073 AAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAAGGAGTCGTCTTGCCG
453 -AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19343138 TGAAACTTCAGGTGAAGGCTTAAGGGACAATTGTATGAATTTACAA-CCATAAAAATGGCACTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19343202 TAGGCA-ACAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
582 CACGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
19343266 CCCGTCTCTCTGGTCGACGTAGTTG-CCGCTCGCC-CACCGCCAGTTCGTTTCGTTGGTTTAGCT
646 CCCGTCTCTCTGGCCGGCGTAG-TGCCCGC-C-CCGC-CCGCCCGCTCGTTTCGTCGG-TTGGCT
* * **
19343329 TAAGGCATA-GGAGTTCATT-CCAGTCTAAGATTAGACTGGACC-AGGGTTATGGTAGCAGGATC
706 T-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC
* * * * ** * *
19343391 CGCA-CAC--AGAGAGGGAACCTCGGTCGGT--CCGACTTATGC-TCCCGCCCATCTGGTCGGCT
770 GGCAGCACGTAGAG-GGGGACC-C-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19343450 GAGCGCACGCATGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGTTC-TTCCCAAGTCTAAGC-
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCA
19343513 TAC
896 TAC
* * * * *
19343516 GGAAGTT-ATT--C-GTCTAAGATC--AGCAGA-CGAGTGGTTTC-AGCCGCACATGCTAGGCTC
1 GG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GGTTGCGA-CAGCACATGCTGGGCTC
* * * * *
19343573 GAGCATGTGCTGGTGCCGTATTCTT-TTCGTCGGGGGCACCTATC-GTCGGAGCATCAT-GCGAG
63 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC-ATCACT-GGAGCATCGTCG-GAG
* * * * *
19343635 AACCTGATC-A-GTGACATT-TGGTGCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATG
124 AACCTGACCGACG-G-CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
19343697 TG-GATGGGTGCTGGTACTTAGCCCTTAAATTGGCGCACCT-TCCCTTATCAAACCTCGAGAACT
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19343760 CATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTGTGA
250 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19343825 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
19343890 TTGTGCATGCCAACAAAAAATACAGGGATTATGTCTATCAAGTTTGGGGCCAAAAATTCTTCCGA
380 TTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
19343955 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAGAACGAGTT
444 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA-AACGAGTC
* * * *
19344019 GTCTTGGCATGAAACTTCTCGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCACAAAAA
508 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
19344084 TTACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATACATGGC
573 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
19344149 TTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCG-CCCGCCCGTCTGCTCGTTTCGTCGGTTG
638 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * * *
19344213 GCTTAGGCATACAGAGTTCATTCTAAGTCTAAGATCAGACCGGATCAAAGGTTGCGGCAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
* * * * * * *
19344278 TTGGCAGGACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAGCCCGGCCCTCTGGTCAGCT
768 TCGGCAGCACGTAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19344343 GAGCGCCTGCACGCTCGTTCCGAGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCAT
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
19344408 AC
897 AC
19344410 GGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
19344431 CATACAGAGT
Statistics
Matches: 25066, Mismatches: 3725, Indels: 2551
0.80 0.12 0.08
Matches are distributed among these distances:
862 2 0.00
863 378 0.02
864 31 0.00
865 1 0.00
866 352 0.01
867 6 0.00
868 1 0.00
870 134 0.01
871 637 0.03
872 186 0.01
873 2 0.00
874 2 0.00
875 109 0.00
876 653 0.03
877 368 0.01
878 82 0.00
879 4 0.00
880 110 0.00
881 6 0.00
882 2 0.00
883 5 0.00
884 14 0.00
885 6 0.00
886 53 0.00
887 37 0.00
888 547 0.02
889 899 0.04
890 837 0.03
891 532 0.02
892 273 0.01
893 96 0.00
894 245 0.01
895 1638 0.07
896 879 0.04
897 874 0.03
898 898 0.04
899 740 0.03
900 1998 0.08
901 1052 0.04
902 1265 0.05
903 3195 0.13
904 1268 0.05
905 353 0.01
906 277 0.01
907 54 0.00
908 447 0.02
909 69 0.00
910 19 0.00
911 18 0.00
912 344 0.01
913 15 0.00
914 7 0.00
915 13 0.00
916 102 0.00
917 148 0.01
918 165 0.01
919 361 0.01
920 48 0.00
921 3 0.00
922 7 0.00
923 9 0.00
924 6 0.00
925 8 0.00
926 19 0.00
927 14 0.00
928 10 0.00
929 20 0.00
930 11 0.00
931 7 0.00
932 9 0.00
933 10 0.00
934 4 0.00
935 3 0.00
936 3 0.00
937 11 0.00
938 11 0.00
939 8 0.00
940 10 0.00
941 2 0.00
942 2 0.00
943 4 0.00
944 7 0.00
945 3 0.00
946 11 0.00
947 9 0.00
948 18 0.00
949 6 0.00
950 13 0.00
951 15 0.00
952 17 0.00
953 28 0.00
954 25 0.00
955 25 0.00
956 16 0.00
957 22 0.00
958 17 0.00
959 23 0.00
960 22 0.00
961 26 0.00
962 30 0.00
963 44 0.00
964 31 0.00
965 33 0.00
966 20 0.00
967 19 0.00
968 30 0.00
969 14 0.00
970 5 0.00
971 5 0.00
972 5 0.00
973 9 0.00
974 2 0.00
975 2 0.00
978 4 0.00
979 2 0.00
980 4 0.00
981 7 0.00
982 5 0.00
983 6 0.00
984 5 0.00
985 13 0.00
986 17 0.00
987 3 0.00
988 3 0.00
989 4 0.00
990 8 0.00
991 1 0.00
992 11 0.00
993 48 0.00
994 181 0.01
995 342 0.01
996 7 0.00
997 3 0.00
998 2 0.00
999 6 0.00
1000 5 0.00
1001 3 0.00
1003 3 0.00
1004 10 0.00
1005 3 0.00
1006 2 0.00
1007 4 0.00
1008 3 0.00
1009 1 0.00
1010 1 0.00
1011 4 0.00
1012 3 0.00
1013 4 0.00
1014 4 0.00
1015 2 0.00
1016 4 0.00
1017 3 0.00
1018 8 0.00
1019 11 0.00
1020 9 0.00
1021 6 0.00
1022 3 0.00
1023 4 0.00
1024 407 0.02
1025 305 0.01
1026 356 0.01
1027 712 0.03
1028 1792 0.07
1029 358 0.01
1030 363 0.01
1031 351 0.01
1032 409 0.02
1033 347 0.01
1034 272 0.01
1035 261 0.01
1036 277 0.01
1037 496 0.02
1038 322 0.01
1039 236 0.01
1040 260 0.01
1041 261 0.01
1042 299 0.01
1043 249 0.01
1044 290 0.01
1045 229 0.01
1046 183 0.01
1047 180 0.01
1048 139 0.01
1049 156 0.01
1050 152 0.01
1051 124 0.00
1052 146 0.01
1053 210 0.01
1054 114 0.00
1055 150 0.01
1056 179 0.01
1057 821 0.03
1058 311 0.01
1059 214 0.01
1060 132 0.01
1061 87 0.00
1062 339 0.01
1063 99 0.00
1064 89 0.00
1065 117 0.00
1066 165 0.01
1067 304 0.01
1068 114 0.00
1069 104 0.00
1070 181 0.01
1071 137 0.01
1072 151 0.01
1073 154 0.01
1074 279 0.01
1075 101 0.00
1076 88 0.00
1077 93 0.00
1078 60 0.00
1079 44 0.00
1080 87 0.00
1081 40 0.00
1082 46 0.00
1083 73 0.00
1084 82 0.00
1085 82 0.00
1086 85 0.00
1087 56 0.00
1088 69 0.00
1089 50 0.00
1090 66 0.00
1091 60 0.00
1092 122 0.00
1093 60 0.00
1094 53 0.00
1095 45 0.00
1096 58 0.00
1097 34 0.00
1098 35 0.00
1099 31 0.00
1100 19 0.00
1101 216 0.01
1102 23 0.00
1103 22 0.00
1104 34 0.00
1105 18 0.00
1106 24 0.00
1107 20 0.00
1108 26 0.00
1109 14 0.00
1110 23 0.00
1111 16 0.00
1112 10 0.00
1113 6 0.00
1114 11 0.00
1115 14 0.00
1116 15 0.00
1117 32 0.00
1118 24 0.00
1119 23 0.00
1120 25 0.00
1121 36 0.00
1122 39 0.00
1123 4 0.00
1124 7 0.00
1125 15 0.00
1126 5 0.00
1127 9 0.00
1128 1 0.00
1129 3 0.00
1130 8 0.00
1131 4 0.00
1132 4 0.00
1133 12 0.00
1134 3 0.00
1135 8 0.00
1136 8 0.00
1137 8 0.00
1138 16 0.00
1139 2 0.00
1140 14 0.00
1141 10 0.00
1142 2 0.00
1143 2 0.00
1144 5 0.00
1145 3 0.00
1146 7 0.00
1147 8 0.00
1148 10 0.00
1149 5 0.00
1150 5 0.00
1151 14 0.00
1152 20 0.00
1153 14 0.00
1154 14 0.00
1155 9 0.00
1156 3 0.00
1158 1 0.00
1159 13 0.00
1160 1 0.00
1164 8 0.00
1165 2 0.00
1166 4 0.00
1167 2 0.00
1168 11 0.00
1170 2 0.00
1171 3 0.00
1172 5 0.00
1173 2 0.00
1174 2 0.00
1176 1 0.00
1177 2 0.00
1178 9 0.00
1179 2 0.00
1180 11 0.00
1181 7 0.00
1182 3 0.00
1183 3 0.00
1184 6 0.00
1185 9 0.00
1186 1 0.00
1187 7 0.00
1188 22 0.00
1189 4 0.00
1190 6 0.00
1191 1 0.00
1192 15 0.00
1193 7 0.00
1194 5 0.00
1195 5 0.00
1196 12 0.00
1197 5 0.00
1198 2 0.00
1199 1 0.00
1204 1 0.00
1205 2 0.00
1206 2 0.00
1207 12 0.00
1208 9 0.00
1209 7 0.00
1210 15 0.00
1211 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
GAGGGGGACCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
Found at i:19317086 original size:25 final size:26
Alignment explanation
Indices: 19317035--19317086 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19317025 GTTGACTTAG
19317035 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19317061 GCATACGGAGTTC-TTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19317086 G
1 G
19317087 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19317928 original size:26 final size:26
Alignment explanation
Indices: 19317898--19317950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19317888 GTTGACTTAG
19317898 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
19317924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19317950 G
1 G
19317951 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19318836 original size:26 final size:26
Alignment explanation
Indices: 19318800--19318852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19318790 GTTGACTTAG
* *
19318800 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19318826 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19318852 G
1 G
19318853 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19319717 original size:26 final size:26
Alignment explanation
Indices: 19319688--19319740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19319678 GCTGACTTAG
*
19319688 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
19319714 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
19319740 G
1 G
19319741 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:19321499 original size:26 final size:26
Alignment explanation
Indices: 19321470--19321522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19321460 GTTGACTTAG
* *
19321470 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCAAGTCTAA
*
19321496 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGCTCATTCCAAGTCTAA
19321522 G
1 G
19321523 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCAAGTCTAA
Found at i:19322418 original size:26 final size:26
Alignment explanation
Indices: 19322382--19322434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19322372 GTTGACTTAG
*
19322382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19322408 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19322434 G
1 G
19322435 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19323309 original size:26 final size:25
Alignment explanation
Indices: 19323273--19323324 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19323263 GTTGACTTAG
*
19323273 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCC-AGTCTAA
*
19323299 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCACTCCAGTCTAA
19323324 G
1 G
19323325 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCACTCCAGTCTAA
Found at i:19324205 original size:26 final size:26
Alignment explanation
Indices: 19324169--19324221 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19324159 GTTGACTTAG
19324169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19324195 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19324221 G
1 G
19324222 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19325096 original size:26 final size:26
Alignment explanation
Indices: 19325067--19325119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19325057 GTTAACTTAG
*
19325067 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
*
19325093 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
19325119 G
1 G
19325120 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:19326006 original size:26 final size:26
Alignment explanation
Indices: 19325970--19326022 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19325960 TTTGACTCAG
*
19325970 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19325996 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19326022 G
1 G
19326023 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19328672 original size:26 final size:26
Alignment explanation
Indices: 19328643--19328695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328633 GTTGACTTAG
*
19328643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19328669 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19328695 G
1 G
19328696 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19329293 original size:889 final size:888
Alignment explanation
Indices: 19327772--19329979 Score: 3458
Period size: 889 Copynumber: 2.5 Consensus size: 888
19327762 GTTGACTTAG
* * ** *
19327772 GCATACGGAGTTCATTCCCAATCTAAGATCGGATTGGACCGAGGGTTGTGGCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
19327837 CTCGGGCATTTACTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAGA
** * *
19327902 ACCTGACCGGCGACATTGGGGTTCC-GACGATC--GGGGGCTGGGGGGTATGCGCACATGATGTA
120 ACCTGACCGGCGGTATTGGGGTTCCAG-CGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * *
19327964 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
184 CGATGAGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * *
19328029 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCAAGTACCCATTAATGTGTCTG-AAA
249 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA
* *
19328093 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTAT
314 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19328158 GTGCATGCCAAAAAAAATACAAAGATCAAGTCTGCCAAGTTTGGGGCCAAAACTCCTTTTGAGAA
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCTGAGAA
* *
19328223 AATTTTAAAAAATCCAAAACCGTAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
443 AATTTTAAAAAATCCAAAACCGTAAAAAGATTCAAAAATCATGAAAAAAAAAAAACGAGTTGTCT
19328288 TGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGGC
508 TGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGGC
*
19328353 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGGCTTGC
573 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGC
* * * *
19328418 GCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGATTGGCTTA
638 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGTTTCATCGATTGGCTTA
** * * * *
19328483 GGCATACGGAGTTCATTCTGAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGTAGGATTGGC
703 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGATAGCAGGATCGAC
* * * * *
19328548 CGCACGA-AGAGGC-GAACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
768 AGCAC-ATAGAGGCAG-ACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAA
*
19328611 CGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19328669 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
19328734 CTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGGC
66 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
19328799 GGTATTGGGGTTCCAGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTG
131 GGTATTGGGGTTCCAGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTG
*
19328864 GTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAAA
196 GTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAAG
19328929 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGACACTTTT
19328994 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAA
*
19329059 AAAAATACAAGGATCACGTCTGCCAAGTTTGGGATCAAAACTCCTTCTGAGAAAATTTTAAAAAA
390 AAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCTGAGAAAATTTTAAAAAA
* * *
19329124 TCCCAAACCGTAAAAAGTTTCAAAAATCATTAAAAAAAAAAAACGAGTTGTCTTGCCTTGAAACT
455 TCCAAAACCGTAAAAAGATTCAAAAATCATGAAAAAAAAAAAACGAGTTGTCTTGCCTTGAAACT
* *
19329189 TCACGTGAAGGCTTAAATGG-CCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGTAGACA
520 TCACGTGAAGGCTTAAA-GGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACACA
* * *
19329253 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCTGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
19329318 CTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAG
649 CTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAG
*
19329383 TTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGATAGCAGGATCGACAGCACATAGAG
714 TTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGATAGCAGGATCGACAGCACATAGAG
*
19329448 GCAGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAACGCCCGTACGCTC
779 GCAGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTACGCTC
*
19329513 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19329558 GCATAAGGAGTTCATTCCCAGTCTGAGATCAGACTGGATCGAGGGTTACGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19329623 CTCGGGCATATGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCGTCATCGGAGAACCTGACCGGC
66 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* *
19329688 GGTATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCT
131 GGTATTGGGGTTCCAGCGATCGGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGAGTGCT
19329753 GGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAA
195 GGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAA
* *
19329818 GTGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAATGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGACACTTT
*
19329883 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAG
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
19329948 AAAAATACGAGGATCACATCTACCAAGCTTGG
390 AAAAATACAAGGATCACGTCTGCCAAGTTTGG
19329980 TCATGTGCTG
Statistics
Matches: 1212, Mismatches: 90, Indels: 26
0.91 0.07 0.02
Matches are distributed among these distances:
886 39 0.03
887 1 0.00
888 216 0.18
889 634 0.52
890 228 0.19
894 2 0.00
897 92 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
GGTATTGGGGTTCCAGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTG
GTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAACTCCTTCTGAGAAAATTTTAAAAAAT
CCAAAACCGTAAAAAGATTCAAAAATCATGAAAAAAAAAAAACGAGTTGTCTTGCCTTGAAACTT
CACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGATAGCAGGATCGACAGCACATAGAGGC
AGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTACGCTCAT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19329562 original size:26 final size:26
Alignment explanation
Indices: 19329532--19329581 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19329522 GTTGACTTAG
*
19329532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19329558 GCATAAGGAGTTCATTCCCAGTCT
1 GCATAAGGAGTTCATTCCCAGTCT
19329582 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19330823 original size:26 final size:26
Alignment explanation
Indices: 19330793--19330845 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19330783 GTTGACTTAC
* *
19330793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
*
19330819 GCATACGGATTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
19330845 G
1 G
19330846 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:19333310 original size:4 final size:4
Alignment explanation
Indices: 19333303--19333336 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
19333293 CGTAGTGCCT
*
19333303 GCCC GCCC GCCC GCCC GCCT GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
19333337 TCATTTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.71, G:0.26, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:19333324 original size:20 final size:20
Alignment explanation
Indices: 19333299--19333336 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
19333289 CCAGCGTAGT
19333299 GCCTGCCCGCCCGCCCGCCC
1 GCCTGCCCGCCCGCCCGCCC
19333319 GCCTGCCCGCCCGCCCGC
1 GCCTGCCCGCCCGCCCGC
19333337 TCATTTCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.68, G:0.26, T:0.05
Consensus pattern (20 bp):
GCCTGCCCGCCCGCCCGCCC
Found at i:19333553 original size:26 final size:26
Alignment explanation
Indices: 19333517--19333569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19333507 GTTGACTTAG
*
19333517 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19333543 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19333569 G
1 G
19333570 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19335359 original size:26 final size:26
Alignment explanation
Indices: 19335323--19335375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19335313 GTTGACTTAG
19335323 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19335349 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19335375 G
1 G
19335376 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19337157 original size:26 final size:26
Alignment explanation
Indices: 19337121--19337173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19337111 GTTGACTTAG
*
19337121 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19337147 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19337173 G
1 G
19337174 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19338051 original size:26 final size:26
Alignment explanation
Indices: 19338021--19338073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19338011 GTTGACTTAG
*
19338021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19338047 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19338073 G
1 G
19338074 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19339002 original size:26 final size:26
Alignment explanation
Indices: 19338924--19338993 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
19338914 GTTGACTTAG
*
19338924 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTGTAA
19338950 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTGTAA
19338976 GCATATGGAGTTCATTCC
1 GCATATGGAGTTCATTCC
19338994 TTGTCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTGTAA
Found at i:19339136 original size:211 final size:211
Alignment explanation
Indices: 19338772--19339165 Score: 542
Period size: 211 Copynumber: 1.9 Consensus size: 211
19338762 TAGGCATACA
* * *
19338772 GAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAACAGGATCGGCAGAACATA
1 GAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAACAGGATCAGCAGAACATA
* * * * *
19338837 GAGGGGGACCCGTTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAACGCCCGCATG
66 AAGGGGGACCCGTCCGATCCCCGACTTGCGCATCCTGCCCCTCTAGCCGGCTGAACGCCCGCACG
* *
19338902 TTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTC
131 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
19338967 CCAGTGTAAGCATATG
196 CCAGTGTAAGCATATG
* * ** * * *
19338983 GAGTTCATTC-CTTGTCTAAGATC-GAACCGGACCAAGGGTTACGGTAGTAGGATCAGCTGCACG
1 GAGTTCATTCTC-AGTCTAAGATCAG-ACCGGACCAAGGGTTACGGCAACAGGATCAGCAGAACA
* **
19339046 TAAAGGGGGACCCGTCCGATCCCCGACTTGTGCAT-CTCGCCCCTCTAGCCGGCTGAGTGCCCGC
64 TAAAGGGGGACCCGTCCGATCCCCGACTTGCGCATCCT-GCCCCTCTAGCCGGCTGAACGCCCGC
**
19339110 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
128 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
19339166 CGAAGAACCT
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
210 4 0.03
211 154 0.97
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (211 bp):
GAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAACAGGATCAGCAGAACATA
AAGGGGGACCCGTCCGATCCCCGACTTGCGCATCCTGCCCCTCTAGCCGGCTGAACGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
CCAGTGTAAGCATATG
Found at i:19339948 original size:26 final size:26
Alignment explanation
Indices: 19339918--19339970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19339908 GTTGACTTAG
*
19339918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19339944 GCATAGGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19339970 G
1 G
19339971 ATTGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19342620 original size:25 final size:26
Alignment explanation
Indices: 19342587--19342639 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19342577 TGGGTTGACT
*
19342587 TAGGTATAC-GAGTTCATTCCAAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
*
19342612 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
19342638 TA
1 TA
19342640 AGATTGGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCAAGTC
Found at i:19344407 original size:26 final size:25
Alignment explanation
Indices: 19344378--19344456 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 25
19344368 GTTGACTTAG
19344378 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCC-AGTCTAA
*
19344404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATT-CCAGTCTAA
19344430 GCATAC-AGAGTTCATTCACAGTCTAA
1 GCATACGA-AGTTCATTC-CAGTCTAA
19344456 G
1 G
19344457 ATTTGACGGG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
25 1 0.02
26 45 0.94
27 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:19344907 original size:26 final size:26
Alignment explanation
Indices: 19344878--19344930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19344868 GTTGACCTAG
19344878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19344904 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19344930 G
1 G
19344931 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19346526 original size:27 final size:26
Alignment explanation
Indices: 19346496--19346549 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
19346486 GTTAACCTAG
19346496 GCATACAGAGTTCATTCCCCAGTCTAA
1 GCATACAGAGTTCATT-CCCAGTCTAA
**
19346523 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19346549 G
1 G
19346550 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19349936 original size:884 final size:886
Alignment explanation
Indices: 19347943--19352147 Score: 5229
Period size: 885 Copynumber: 4.8 Consensus size: 886
19347933 NNNNNNGCCG
19347943 GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCC
1 GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCC
* *
19348008 CTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
19348073 GTAGCCATTAAGGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
19348138 GAGTTTTTAGCTGAATGTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
19348203 GGGCTAAAACACTTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
19348268 AAAAATAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
19348333 ATTTACAAGCCATAAAAAAGGCATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACC
390 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * *
19348398 ACCCTATCAATCCACACCTTCCGCATCCCGTCTCTCTGGCCGGCGTA-TGCCCGCCCGCCCGCCC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG---
* * * * *
19348462 ACTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCCTTCCCAGTCTAAGATTGGACC-GCACTG
517 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCG
* * * * * * * *
19348526 GGGGTTGTGGCAACAGGATCGACAGCAC-ACAGAGGGGTACCTGGCCGATTCCCGGCTAT-CGCA
580 AGGGTTGCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCT-TGCGCA
* * *
19348589 TTCC-GCCCCTCTGGCCAACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
644 -TCCAGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
19348653 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGCA-GGTT
708 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCG-AGGGTT
* * *
19348717 GCGGCAGCACATCCTGGGCTTGGGCA-GTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCAT-C
771 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCC
* * * * **
19348780 -GCCGGAGAACCTAACCGACGACATTGGGGTTCCGGCGATC-GGGGGGCGG
836 AGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCA
*
19348829 GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCT
1 GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
19348894 TCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
19348959 TAGCCATTAAAGTGTCTCAAATGGGGTCACTTTTTTCAAATGGCCACAAAAACTTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
19349024 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGAT-ACGTCTACCAAGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * *
19349088 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTAAAAAATCCTGA
261 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-
*
19349153 AAAAATAGAAAACGAGTCGTTCTTGCCATTGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTAT
325 AAAAATAGAAAACGAGTCG-TCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
19349218 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
*
19349283 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC
* * * *
19349348 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACACCAGACCAGACCGAGG
518 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * ** * *
19349413 GTTACGGTAGCAGGATCGACAGCACGTCA-AGGGGGACCCGATCGATCCCTAGCTTGCGCATCCC
583 GTTGCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCA
* * * * * *
19349477 GCCCCTCTAGTCTGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCA
648 GCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
19349542 TTCCCAATCTAAGCTTACGGAGTTGATTCCTAGTCTAAGATCGGACCGCACCGAGGGTTGTGATA
713 TTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCA
* *
19349607 GAACATGCTGGGCTCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCAT-CA-CCGG
777 GCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCAGCCGG
*
19349670 AGAACCTGACCGGCGGCATTAGGG-TCCGACGATCGGGGGGGCCA
842 AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCA
* *
19349714 GGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
19349779 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
19349844 TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACGCATCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
19349908 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGT
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
19349973 GGCCAAAACGCCTTCCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
261 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * * *
19350038 GAAATAGAAAACGGGTTGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
326 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * * *
19350103 ATTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCA
391 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** *
19350168 CCCTATCGATCCACGGCTTGCG-ATCCCGTCTTTCTGGCCAACGTAGCGCCCACATGCCCGCCCG
456 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG----C-T-G-GCGTA-GTGCCCGCCCG
* * ** *
19350232 CCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGAC
513 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* ** * * * * ** *
19350297 CAAGGGTTATGGCAGCAAGATCGGCAGCACG-TAGAGGGGGACTTGGCCGATCCCCAGCGTGCGC
578 CGAGGGTTGCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGC
* * * * * *
19350361 ATCCATCCCCTCTGGCCGGCTGAGCTCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATGCGGA
643 ATCCAGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
19350426 GTTTATTCCCAGT-T--G---A---AG--CA-T---A--C-----T----------GAGGGTTGC
708 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGC
19350459 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCC
773 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT--CC
* * ** **
19350524 GGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACAATTAGGGGGGCTGG
836 --AGC--CG---GAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGC-CA
* * * *
19350583 GGGGGTTGTGCGC-TATGATGTATGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGG-TGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
19350647 CGCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
19350712 GTGGCCATTAAAGCGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTT
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTT
19350777 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
19350842 GGGGTCGAAAA-TCCTTCCGAAAAACTTTTAAAAAATCCCGAACCAG-AAAAAGTTTCAAAAATC
259 GGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATC
* * *
19350905 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTA
322 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
19350970 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA-ATGTCCCTAAACCCACCT
387 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
19351034 ACCACCCTATTGATCCACGGCTTGCGCATCCCATCTCTCTAG-TCGACGTAGTGCCCGCCCGCCC
452 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGT----GCCCGCCC
* **
19351098 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
512 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* ** * * * * * * *
19351163 CCGAGGGTTGCGGTAGAAGGATTAATAACATG-CAGAGGGGGACCCGACCGATCCCCGGCTCGTG
577 CCGAGGGTTGCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCTTGCG
* * * *
19351227 CATCTAGCCCCTCTGGCC-GATTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
642 CATCCAGCCCCTCTGGCCAG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * *
19351291 GAGTTCATTCCCAGTCTTAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGTT
706 GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGT
* * * * * *
19351356 TACGGCAGCACATGCTGGGCTTGGGCATGTGCTAGTGCCGTATTTTTCTTCCTCGGGGCACCATC
770 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT-
* * * *
19351421 GCCAGAGCATCGCCGGAGAACCTGACCGACGGTATT-GAGGTTTCGGCGATCGGTGGGGCCA
834 --C----CA--GCCGGAGAACCTGACCGACGGCATTAG-GGTTCCGACGATCGGGGGGGCCA
* * ** * * * * *
19351482 GGGGGGTATGCGCACATGATGTACGGTGGATGCTGGTACTTGACCTTTTTATTGGCCCCCTATCC
1 -GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
19351547 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
19351612 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
19351676 TGAGTTTTTTGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTGCCAAGTTT
195 -GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *** *
19351741 GGGACCAAAACTCCTTCCGAAAAAATGTTAAAAAATCTCGAATCGTAAAAAGTTTTGTAAATCTT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
19351806 GAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
19351871 AATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACTCAGCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * * *
19351936 CACCCTATCGATCCACGGCTTGCGCATCTCATCTTTTTAGAC-GACGTAGTGCCCGCCCGCCTGT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCTGGCGTAGTGCCCGCCCGCCCGC
* * * * * *
19352000 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGATCGGATCAAGG
518 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * * *
19352065 GTTGCAGTAGCAGGATCGACAGCAC-ACAAAGGGGGACCCGGTCGATCCCCGGTTTGCTCATCCA
583 GTTGCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCA
* * * *
19352129 TCCCTTCTGCCCGGCTGAG
648 GCCCCTCTGGCCAGCTGAG
19352148 TTCATTCCCA
Statistics
Matches: 2880, Mismatches: 341, Indels: 186
0.85 0.10 0.05
Matches are distributed among these distances:
856 65 0.02
859 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 4 0.00
865 2 0.00
866 1 0.00
867 200 0.07
868 16 0.01
869 154 0.05
870 55 0.02
871 233 0.08
872 7 0.00
873 1 0.00
874 1 0.00
876 2 0.00
877 1 0.00
878 3 0.00
879 1 0.00
880 2 0.00
881 14 0.00
882 117 0.04
883 15 0.01
884 374 0.13
885 506 0.18
886 64 0.02
887 140 0.05
888 19 0.01
889 186 0.06
896 133 0.05
897 1 0.00
898 8 0.00
899 232 0.08
900 312 0.11
901 1 0.00
903 3 0.00
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
GCGGTAGCAGGATCGACAGCACGACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCAGCC
CCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCAGCCGGAGAA
CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCA
Found at i:19352249 original size:117 final size:116
Alignment explanation
Indices: 19352028--19352264 Score: 323
Period size: 117 Copynumber: 2.0 Consensus size: 116
19352018 TAGGCATACG
* * *
19352028 GAGTTCATTCCCAGTCTCAGATCGGATCGGATCAAGGGTTGCAGTAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTCAGATCGGACCGAATCAAGGGTTGCAGCAGCAGGATCGACAGCACACA
* * ** *
19352093 AAGGGGGACCCGGTCGATCCCCGGTTTGCTCATCCATCCCTTCTGCCCGGCT
66 AAGGGGGACCCGGCCAATCCCAAGTTTGC-CATCCATCCCCTCTGCCCGGCT
* *
19352145 GAGTTCATTCCCAGTCTTAGATCGGACCGAATCAAGGGTTGCAGCAGCAGGATCGGCAGCACACA
1 GAGTTCATTCCCAGTCTCAGATCGGACCGAATCAAGGGTTGCAGCAGCAGGATCGACAGCACACA
* * *
19352210 GAGGGGGACCCGGCCAATCCTCAAGTTGTG-CATCTATCCCCTCTGGCCGGCT
66 AAGGGGGACCCGGCCAATCC-CAAGTT-TGCCATCCATCCCCTCTGCCCGGCT
19352262 GAG
1 GAG
19352265 CTCCCGCATG
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
117 99 0.94
118 4 0.04
119 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (116 bp):
GAGTTCATTCCCAGTCTCAGATCGGACCGAATCAAGGGTTGCAGCAGCAGGATCGACAGCACACA
AAGGGGGACCCGGCCAATCCCAAGTTTGCCATCCATCCCCTCTGCCCGGCT
Found at i:19352326 original size:26 final size:26
Alignment explanation
Indices: 19352297--19352349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19352287 GTTGACTTAG
*
19352297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19352323 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19352349 G
1 G
19352350 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19355217 original size:723 final size:722
Alignment explanation
Indices: 19353831--19355302 Score: 2194
Period size: 723 Copynumber: 2.0 Consensus size: 722
19353821 CGTGGGTTAA
* * * *
19353831 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCTAGGGTTGCAGTAGCACATG
1 CTTAGGCATACGGAGCTCATTCCCAGTCTAAGATAGGACCAGACCTAGGGATACAGCAGCACATG
* * ** * * *
19353896 CTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCCTCGTCGGGGCACCATCATCGGAGCATCGCC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGCACCATCACCGAAGCATCACC
* * * * * *
19353961 GTAGAACCTGACTGACGGCTTTAGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGTACATGA
131 GGAGAACCTGACCGACGGCATTAGGGTTTCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGA
*
19354026 TGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTTGAGAAC
196 TGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTCGAGAAC
*
19354091 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTG
** * **
19354156 AAATTTGGACACTTTTTTCCAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGCATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCT-CAAATT
* * * * * *
19354221 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAATTGCTTCA
390 TTTTTTTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTCGGGCAAAAAATCCTTCA
* ** *
19354286 CAAAAAATTTAAAAAAATCTCGAACCAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
455 CAAAAAATTTAAAAAAATCCCGAACCAAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTC
*
19354351 GTCTTGCCACGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAA
520 GTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19354416 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
585 TGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
19354481 TTGCACATCCCGTCTCTCTGGTTGGTGCAGTGCCTGCCCGCTCGCCCGCCTGCCCATTCGTTCTA
650 TTGCACATCCCGTCTCTCTGGTTGGTGCAGTGCCTGCCCGCTCGCCCGCCTGCCCATTCGTTCTA
19354546 TCGGTTGG
715 TCGGTTGG
* *
19354554 CTTAGGCATACGTAGCTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGATACAGCAGCACAT
1 CTTAGGCATACGGAGCTCATTCCCAGTCTAAGATAGGACCAGACCT-AGGGATACAGCAGCACAT
*
19354618 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGAAGCATCAC
65 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGCACCATCACCGAAGCATCAC
** * *
19354683 CGGAGAACCTGACCGGTGGCATT-GGGGTTCTGGCGATCGGGAGGGCCAGGGGGGTGTGCGCACA
130 CGGAGAACCTGACCGACGGCATTAGGGTTTC-GACGATCGGGAGGGCC-GGGGGGTGTGCGCACA
* * **
19354747 TGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
193 TGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTCGAG
* * *
19354812 AACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGT
* *
19354877 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCT-AAA
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAAA
19354941 TTTTTTTTTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTCGGGCAAAAAATCCTT
388 TTTTTTTTTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTCGGGCAAAAAATCCTT
* *
19355006 C-CGAAAAATTTTTAAAAAATCCCGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACG
453 CAC-AAAAAATTTAAAAAAATCCCGAACCA-AAAAAGTTTAAAAAATCATGAAAAATAGAAAACG
*
19355070 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
516 AGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
19355135 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCA
581 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * * * *
19355200 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTTG-----T--T
646 CGGCTTGCACATCCCGTCTCTCTGGTTGGTGCAGTGCCTGCCCGCTCGCCCGCCTGCCCATTCGT
*
19355258 TC-GTCGGTTGG
711 TCTATCGGTTGG
* *
19355269 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
1 CTTAGGCATACGGAGCTCATTCCCAGTCTAAGAT
19355303 TGGATCAAAC
Statistics
Matches: 675, Mismatches: 69, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
715 39 0.06
716 3 0.00
718 1 0.00
721 1 0.00
722 92 0.14
723 347 0.51
724 192 0.28
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (722 bp):
CTTAGGCATACGGAGCTCATTCCCAGTCTAAGATAGGACCAGACCTAGGGATACAGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGCACCATCACCGAAGCATCACC
GGAGAACCTGACCGACGGCATTAGGGTTTCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAAATTT
TTTTTTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTCGGGCAAAAAATCCTTCAC
AAAAAATTTAAAAAAATCCCGAACCAAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCACATCCCGTCTCTCTGGTTGGTGCAGTGCCTGCCCGCTCGCCCGCCTGCCCATTCGTTCTAT
CGGTTGG
Found at i:19355463 original size:26 final size:26
Alignment explanation
Indices: 19355433--19355483 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19355423 GTTGACTTAC
19355433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19355459 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19355484 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19356029 original size:26 final size:26
Alignment explanation
Indices: 19355995--19356044 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19355985 GACTTAGGCG
*
19355995 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
19356021 TACGAAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
19356045 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:19356921 original size:25 final size:25
Alignment explanation
Indices: 19356893--19356940 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
19356883 GTTCACTTAG
19356893 GCATAC-GACGTTCATTCCCAGTCAA
1 GCATACGGA-GTTCATTCCCAGTCAA
19356918 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
19356941 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:19358709 original size:26 final size:26
Alignment explanation
Indices: 19358679--19358731 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358669 GTTGACTTAG
19358679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19358705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19358731 G
1 G
19358732 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19360460 original size:26 final size:25
Alignment explanation
Indices: 19360420--19360471 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19360410 ATTGACTTAG
19360420 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATT-CCAGTCTAA
* *
19360446 GCATACGGAGTTCATTCCTGTCTAA
1 GCATACGGAGATCATTCCAGTCTAA
19360471 G
1 G
19360472 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGATCATTCCAGTCTAA
Found at i:19361339 original size:26 final size:26
Alignment explanation
Indices: 19361303--19361355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19361293 GTTCACTTAG
*
19361303 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19361329 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19361355 G
1 G
19361356 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19363578 original size:904 final size:897
Alignment explanation
Indices: 19361463--19364691 Score: 4106
Period size: 936 Copynumber: 3.5 Consensus size: 897
19361453 CCGACGACAT
* * * *
19361463 TGGGTGTTGGTACTTGGCCCTTATATTGTCCCGCTATCCCTCATCAAACCTCGAGAACCCACA-C
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
* * * *
19361527 ACCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGTCATTAAAGTGTGTGAAATGG
66 -CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
19361592 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
130 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
* * * * **
19361657 CATACCAAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCTAAAAAAA
194 CATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * *
19361722 TTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
258 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19361787 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCAT
323 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19361852 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
388 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGC
* * * * * *
19361917 ATCCCGTCACTTTGGCCGGCATCGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
453 ATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * * * *
19361982 TAGGAATACGGAGTTCACTCCCAGTCTGAGATGAGACTAGATCGACGGTTGTGGCAATAGGATTG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAATAGGATCG
** * * * * * *
19362047 GCAACACATAGAGGGGGACCTGGTCGATCCTCGGC-TGCGCATCCCACCCCTCTGGCGGGCTGAA
583 ATAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
19362111 CACCCGTACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
648 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
** * * * * *
19362176 GAGTTCATTCGTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTT-GTCTCGGG
713 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCACAT-CTTGGGCTCAGG
* *
19362240 CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTAGAGAACCTGA
777 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGA
* * * **
19362305 CCGACGACATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTTG-GGAGCTGTGATGTATGA
842 -CGACG-CATTGGGGTTCCGACGATCGGGGGGCC--GGGGGTTGCGCA-C-ATGATGTGCGA
* * *
19362366 TGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCACACCTCGAGAACTCACA-C
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
* * * *
19362430 CCCTTTAAAGATCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGTATCTGAAATGG
66 CCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
19362495 GGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGGTGATTTATTTTTTG
130 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTG
* * ** *
19362560 TATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGTTCCAAAAATTCTTCCGAAAAAAT
194 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* * ** *
19362625 TTTCAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCTTCTTGC
259 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
19362690 CATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGTCATAAAAATGGCATT
324 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19362755 GGCATGCATAAATTTGAAGATGTGCCTAGACCCACCTACCACCCTAGT-GATCCATGACTTGCGC
389 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCATGACTTGCGC
* ** * * * *
19362819 ATCCCGTCTCTCTACCCGGTGTAATGCCCGCCCGTCTGCCCGCCCGCTCGTTTCTTCGGTTGGCT
453 ATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
*
19362884 TAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCAGATCGAGGGTTGCGGCAATAGGATCG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAATAGGATCG
** * * * * *
19362949 ATAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGGGCATCTCGCCCCTCTGGCTGGCTGAG
583 ATAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
** * *
19363014 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTGTACAGAGTTCATTCCCAGTCTAAGCATACG
648 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* *
19363079 GAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCACATCTTGGGCTCAGGC
713 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCACATCTTGGGCTCAGGC
*
19363144 ATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCGTCGCCGGAGCATCG-TCGGAGAACCTG
778 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCT-GGAGAACCTG
*
19363207 ACGGGCAGCATTGGGGTTCCGACGATCGGTGGGGCCGACGGGGTGTGCGCACATGATGTGCGA
841 AC-GAC-GCATTGGGGTTCCGACGATCGG-GGGGCCG--GGGGT-TGCGCACATGATGTGCGA
* * *
19363270 TGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCAAGAACTCACAGC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
* *
19363335 CCTTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19363400 AACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTGGTAC
131 GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGC
** ** *
19363465 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGTAAAAATCCTTTTGAAAAAGTT
195 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
* * *
19363530 TTAAAAAATCCCGAACCGTAAGAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCA
260 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
19363595 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATG
325 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
19363660 GCACGTAGAAGTATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCA-CAGCTTGCGCA
390 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGA-CTTGCGCA
* * * * *
19363724 TCCCGTCTCTCTGGTCGGTATAGTGCCCGCCTGCCCGCCCGCCCCCCCCCCGTTCGTTTCATCGG
454 TCCCGTCTCTCTAGCCGGCATAGTG--C-CC-GCCCGCCCG---CCCGCCCGCTCGTTTCATCGG
* * * * *
19363789 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACTGAGTGTTGCTGCAGC
512 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCA-A
* * * *
19363853 CA-GATCGATAGCACATAGAGGGGGACCCGACCGATCACCGGCTTGCGCATCCCACCCCTTTGGC
575 TAGGATCGATAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* * *
19363917 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTA
640 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
19363982 ACCATACAGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCGAATCTAAGATCGGACCAGA
705 AGCATACAGAGTTCATTCCCAGTCTAA-GAT-C--AG---A--CCGAA-C-----T-------G-
* * * * * *
19364047 CCAAGGGTTACGGCAGCGCATGTTGGGCTCAGGCATGTACTGGTGCCGTATTTTTCTTCATCGGG
747 ---AGGGTTGCGGCAGCACATCTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
19364112 GCACCATCGCCAGAGCATTGCTGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGG
809 GCACCATCGCCGGAGCATCGCTGGAGAACCTGA-CGAC-GCATTGGGGTTCCGACGATC-GGGGG
19364177 GCCGGAGGGTATGCGCACATGATGTGCGA
871 GCCGG-GGGT-TGCGCACATGATGTGCGA
*
19364206 TGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
* *
19364271 CCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19364336 GACACTTTTTTCAAATGGTCACAAAATATTCTACACTTCGAGTTTTTAGCTGAATTGTTTTATGC
131 GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGC
* * * * *
19364401 ATGCCGATAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
195 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
* * * * *
19364466 TTAAAAAATCCCGAACCGTAAAAAGTTGCAAAAATCGTGAAAAATACAAAATGAGTTGTCTTGCC
260 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19364531 ATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTG
325 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
19364596 GCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCATGGCTTGCGCAT
390 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCAT
* *
19364661 CCCGTCTCTCTTA-CCGACGTAGTGCCCGCCC
455 CCCGTCTCTC-TAGCCGGCATAGTGCCCGCCC
19364692 ATCTGCTGGT
Statistics
Matches: 2014, Mismatches: 251, Indels: 93
0.85 0.11 0.04
Matches are distributed among these distances:
902 374 0.19
903 390 0.19
904 431 0.21
905 6 0.00
906 3 0.00
907 2 0.00
908 7 0.00
910 3 0.00
911 206 0.10
912 3 0.00
913 1 0.00
915 2 0.00
918 1 0.00
920 5 0.00
921 1 0.00
926 1 0.00
932 4 0.00
933 3 0.00
934 1 0.00
935 1 0.00
936 450 0.22
937 114 0.06
938 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (897 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATC
CCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAATAGGATCGATA
GCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCACATCTTGGGCTCAGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACGAC
GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTTGCGCACATGATGTGCGA
Found at i:19364034 original size:26 final size:26
Alignment explanation
Indices: 19363958--19364026 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
19363948 TTTACTTAGG
*
19363958 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
19363984 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
19364010 CATACAGAGTTCATTCC
1 CATACAGAGTTCATTCC
19364027 GAATCTAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:19364749 original size:26 final size:26
Alignment explanation
Indices: 19364719--19364771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19364709 GTTGGCTTAG
*
19364719 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19364745 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19364771 G
1 G
19364772 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19367078 original size:26 final size:26
Alignment explanation
Indices: 19367049--19367101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19367039 GTTGACTTAG
19367049 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* * *
19367075 GCATACTGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
19367101 G
1 G
19367102 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:19367964 original size:26 final size:26
Alignment explanation
Indices: 19367935--19367987 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19367925 GTTGACTTTG
* * *
19367935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCAAGTATAA
19367961 GCATACGGAATTCATTCCAAGTATAA
1 GCATACGGAATTCATTCCAAGTATAA
19367987 G
1 G
19367988 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCAAGTATAA
Found at i:19368116 original size:886 final size:868
Alignment explanation
Indices: 19366653--19369224 Score: 3022
Period size: 886 Copynumber: 3.0 Consensus size: 868
19366643 CTCGAACCGT
* * *
19366653 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCC-TTGAAACTTCATGTGAAG
1 AAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATT-AAACTTCATGTGAAG
*
19366717 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCCCATAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
* * * *
19366781 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGTCCGG
130 ATGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGCTTGTC-CATCCCGTCTCTCTGGCCGA
* * *
19366845 CGTAGT---GCCG-GCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
194 CGTAGTCCCGCCGCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
* * * * ** *
19366906 CCTAGTCTAAGATCAGGCCGGACTGAGGGTTGCGACAGCAAGATCAGTAGCACGCAGAGGGGGAC
259 CCCAGTCTAAGATC-GGACGGACCGAAGGTTGCGGTAGCAGGATCAGTAGCACGCAGAGGGGGAC
* ** * * *
19366971 CTGGCCGAT-CCTCGGC-TAGTACATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTT
323 CCGATCGATCCCT-GGCTTA-TGCATCCAGCCCCTCTGGTCGGTTGAGCACCCGCACGCTCGTTT
** * * *
19367034 CACGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACTGAGTTCATTCTCAGTCT
386 CGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-TTCATTC-CAGT-T
** * * *
19367099 AAGATCAGATCGGACCGAGAATTACGATAGCACATGCTGGACTCGGGCATGTGCTGGTGCCACAT
448 AAGATC-GA-C-GA-CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
** * *
19367164 TTTTCTTCGCCAAGGCACCATCGTTGGAGCATCACC-AGAGAACCTGACCGACGGCATTGGGGTT
509 TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGA-AGAACCTGACCGGCGGCATTGGGGTT
* * * * * * *
19367228 TCGAAGATCGGGGGGGCCGGGGGGGGTGTGTGCATAAGATGTGTGATGGGTGCTAGTACCTGGCC
573 TCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
19367293 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAG
636 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAG
*
19367358 ATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
701 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
19367423 CACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
766 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
19367488 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
831 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
19367526 AAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAAG
1 AAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGG
** *
19367591 CTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACACAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
*
19367656 TGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGCTTGTCCATCCCGTCTTTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGCTTGTCCATCCCGTCTCTCTGGCCGACG
* *
19367721 TAGTTACCACCCGCCCGTCTGCCCGCCCGTCCGCTCATTTCGTCGGTTAGCTTAGGCTTACGAAG
196 TAG-T----CCCG-CCG-C-GCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAG
* * * ** **
19367786 TTCATTCCCAGTCTAAGATCGGACTGAGCGGAAGGTTGTGGTAATAGGATCAACAGCACGCAGAG
253 TTCATTCCCAGTCTAAGATCGGACGGA-CCGAAGGTTGCGGTAGCAGGATCAGTAGCACGCAGAG
* * *
19367851 GGAGACCCGATCGATCCCTGGCTTATGCATCCGGCCCCTCTGGTCGGTTGAGCACCCGTACGCTC
317 GGGGACCCGATCGATCCCTGGCTTATGCATCCAGCCCCTCTGGTCGGTTGAGCACCCGCACGCTC
19367916 GTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCAA
382 GTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-ATTCATTCC-A
* * *
19367981 GTATAAGATCGGACCAGACTGAGGGTTGCGACAGTACATGCTGGGCTCGGGTATCTGCTGGTGCC
445 GT-TAAGATC-GA-C-GAC-GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
19368046 ATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACTGGTGGCATTGAG
505 ACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTGGG
*
19368111 GTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGC
570 GTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
19368176 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACAAACACCCCCTTAAAGAGCATTTGA
635 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGA
* *
19368241 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGA
700 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
19368306 TCACAAAATCTTGTACACTTCGAGTTATTAGCTGAATTTTTTTTTGCATGCCAAC-AAAATACAA
765 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * **
19368370 GGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTTTG
830 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
19368409 AAAAAATTTTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
1 AAAAAA--TT-----T-T------G--AAAA---TC----A---TGAAAAATAGAAAACGAGTCG
* * *
19368474 TCTTGCCA-TAAGACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATCTACAAGCCATAAAAA
40 TCTTGCCATTAA-ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
19368538 TGGCATTGGCATGTAGAAATATGAAGATCTTCCTAAACCCACCTACCACCCTATC-G-----A--
104 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGC
* *
19368595 ---TCCA----GTCTCTCTGGCCGACATAGTGCCCGCC-CGCCCGCCCGT----TCGTTTCGTCG
169 TTGTCCATCCCGTCTCTCTGGCCGACGTAGT-CCCGCCGCGCCCGCCCGTCCGCTCATTTCGTCG
* *
19368648 ATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCG-AGTGTTGCGGTAG
233 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAAG-GTTGCGGTAG
* * * * ** * * *
19368712 CCGGATCAGTAGCACGTAGAGGGGGACTCGATCAATCCCTGGCTTGCGCATCCAGCACCTCAGGC
296 CAGGATCAGTAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTATGCATCCAGCCCCTCTGGT
* * *
19368777 CGGTTGAGCGCCTGCACGCTCGTTTCGTTGGTTGA-TTTAGGCATACGGAGTTCATTCCCAGTCT
361 CGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTT-GGCATACGGAGTTCATTCCCAGTCT
*
19368841 AAG-AT-CGG----A--CC-G----GAT------CGAGGGTTGCGGCAGCACATGCTGGGCTCGG
425 AAGCATACGGATTCATTCCAGTTAAGATCGACGACGAGGGTTGCGACAGCACATGCTGGGCTCGG
* ** * * * * *
19368887 GCATGTTCTGGTGCGGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTG
490 GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTG
* * * * * * *
19368952 ACCAGCGGCATTGGGGCTCCGACTATC-AGGGGG-CTGGGGGTGTGCACACATGATGTGCGATGG
555 ACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
19369015 GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCACAGCCCC
620 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCC
* *
19369080 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGAC
685 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19369145 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTGTTTTGTGCATG
750 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19369210 ACAATAAAAATACAA
815 CCAACAAAAATACAA
19369225 TAAAAATACG
Statistics
Matches: 1481, Mismatches: 165, Indels: 124
0.84 0.09 0.07
Matches are distributed among these distances:
854 212 0.14
855 14 0.01
856 101 0.07
857 1 0.00
866 3 0.00
871 1 0.00
873 103 0.07
874 80 0.05
875 3 0.00
880 3 0.00
881 7 0.00
882 170 0.11
883 56 0.04
884 215 0.15
885 9 0.01
886 327 0.22
887 8 0.01
889 2 0.00
890 5 0.00
891 1 0.00
893 1 0.00
894 17 0.01
897 1 0.00
898 4 0.00
899 4 0.00
902 2 0.00
903 1 0.00
906 1 0.00
908 4 0.00
909 125 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
AAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGCTTGTCCATCCCGTCTCTCTGGCCGACG
TAGTCCCGCCGCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCGGACGGACCGAAGGTTGCGGTAGCAGGATCAGTAGCACGCAGAGGGGGACCCG
ATCGATCCCTGGCTTATGCATCCAGCCCCTCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGG
GTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTCATTCCAGTTAAGATCGA
CGACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG
GGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCG
Found at i:19369625 original size:25 final size:26
Alignment explanation
Indices: 19369577--19369628 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19369567 GTTGACTTAG
19369577 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19369603 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19369628 G
1 G
19369629 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19370526 original size:25 final size:26
Alignment explanation
Indices: 19370478--19370529 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19370468 GTTGACTTAG
19370478 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19370504 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19370529 G
1 G
19370530 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19371369 original size:26 final size:26
Alignment explanation
Indices: 19371340--19371392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19371330 GTTGACTTAG
19371340 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19371366 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19371392 G
1 G
19371393 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19372483 original size:26 final size:26
Alignment explanation
Indices: 19372444--19372496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19372434 GTTGACTTAG
* *
19372444 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
19372470 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
19372496 G
1 G
19372497 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:19373366 original size:26 final size:26
Alignment explanation
Indices: 19373337--19373389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19373327 GCTGACTTAG
19373337 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
19373363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19373389 G
1 G
19373390 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19375124 original size:26 final size:26
Alignment explanation
Indices: 19375094--19375146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19375084 GTTGACTTAG
*
19375094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19375120 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19375146 G
1 G
19375147 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19375812 original size:4 final size:4
Alignment explanation
Indices: 19375803--19375830 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
19375793 GGCGTAGTGT
19375803 CCGC CCGC CCGC CCGC CCGC CCGC CCGC
1 CCGC CCGC CCGC CCGC CCGC CCGC CCGC
19375831 TCGTTTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.75, G:0.25, T:0.00
Consensus pattern (4 bp):
CCGC
Found at i:19376047 original size:26 final size:26
Alignment explanation
Indices: 19376011--19376063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19376001 GTTGACTTAG
**
19376011 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19376037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19376063 G
1 G
19376064 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19377253 original size:902 final size:903
Alignment explanation
Indices: 19374221--19384190 Score: 12780
Period size: 902 Copynumber: 11.1 Consensus size: 903
19374211 GTTGAGTTAG
* * * ** *
19374221 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19374286 CTCGGGCATGTGTTGGTGTCACCTTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
* * * * *
19374351 ACCTGACCGGCGGTATTGGGTTTCCGACGATCGGGGTGGCCGCGGGGGTGTACGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
19374416 CGATGGGTGCTGGTACTTGACCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19374481 A-CCCCTTAAAGGGCGTTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAA
*
19374544 TGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * ***
19374609 ATGCATACGAACAAAAATACGCCGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * *
19374673 AAGTTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
454 AA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19374738 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19374803 CATTGGCAGGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
19374868 CGCATCCCGTCTCTCTGGCAGGCGTTGTACCCGCCCGCCCG--C-AC-GCTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTG
* * * * *
19374929 GCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGTAGCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* ** *
19374994 TCGACAACACGCAGAGGGGGA-ATGAGCTGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGG
778 TCGACAGCACGCAGAGGGGGACCCG-GCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGG
* *
19375057 CTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19375120 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGACAGCACGA-GTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC-ATGCTGG
* * * ** *
19375184 GCTCAGGCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATC-ACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGA-CGGA
* * * *
19375248 GAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGTGGGGGGTGTGCGCACA
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-----CGGGGGGTGTGCGCACA
* *
19375313 TGATGTGCGATGGCTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
188 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
19375378 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
19375443 CTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCTAGTTTTTAGTTGAAT
318 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
19375508 TTTTTTGTGCATGCCAACAAAAATGA-AAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCAT
383 TTTTTTGTGCATGCCAAAAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
19375572 CCGAAAAAATTTAAAAAAATCCC-AAGTCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
447 CCGAAAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
* * * *
19375636 AGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
19375701 AAAATGGCATTGGCACACA-AAACTATGAAGTTGTGCTTAAACCCACCTACCAGCCTATCGATCC
576 AAAATGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
19375765 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCCCGCCCGCCCG
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--GT------GCCCGCCCGCCCGCCCGCCTG
* * * * *
19375830 CTCGTTTCATCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGTTCAGACCAGACAGAG
697 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * ** * * *
19375895 GGTTGTGGCAGCAGGATCGACAGCATGTAGAGGCAGACCCGGTCGATCCCTGGCTTGCGCATCCC
762 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCC
* * * *
19375960 GCCCCTCTGGCCTGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
827 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
**
19376025 TTCTTAGTCTAA
892 TTCCCAGTCTAA
* * *
19376037 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
19376102 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCATCGGAGCATTGCCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
* * * * * *
19376167 ACCTGATCGGCGGTATTGGGGTTCCGACGATC-GGGGGCCCGGGGGGGTGTGTGCACATGGT-TG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
** ** *
19376230 CGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAAGTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19376295 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTTGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19376360 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19376425 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACATTTCGAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
* * *
19376489 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19376554 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19376619 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19376684 GCGTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCTCGCCTGTTCATTTTGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * * * * * * *
19376749 CTTAGCCATACGGAGTTCATTCCTAGTCTAAGATCGGGCCGCACCAAGGGTTCCGGTAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
19376814 CAACAGCACGTAGAGGGGGACTCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTG
779 CGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
19376879 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19376939 GCATACAGAGTTGATTCCTC-GTCTAAGATCGGACCAGACTGAGGGTTGCGGAAGCACATGCTGG
1 GCATACGGAGTTCATTCC-CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
19377003 GCTC-GACAATGTGCTGATGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATC-ACTG
65 GCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGACGG
* * ** *
19377065 CGAACCAGACCGACACCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
**
19377130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19377195 ACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCTAGTAGCCACTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19377260 ATGGGGACACTTTTTTTCGAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
323 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** * *
19377325 TTGTGTATGCCAAAAAAAATACAAGGATCATGTCCAAAAATTTTGGGGCTAAAACTCCTTCCGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19377390 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA-AATTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCG
* * * * *
19377454 TCTTGCCATGAAACATCACGTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAACAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19377519 GGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCTCCCTATCGATCCACGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * * *
19377584 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCATCCGCACGCCCGCCCT-CTCGTTTCTTTGG
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGG
* * * * *
19377648 TTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATC-GAACCGAACTGTA-GGTTGCGGTAG
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCG-AGGGTTGCGGCAG
* * * * * * *
19377711 AAGGATTGGCAGCACGCAGAGCGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCATTTTGG
773 CAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCC-CTCTGG
* * * *
19377776 CCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCT
837 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19377841 AA
902 AA
** * * * *
19377843 GCATACGGAGTTCATTCCCAGTCTAAGATC-G-CTGGACCGATGGTTACGGCAGCACATGCTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19377906 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCTTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
*
19377971 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
19378036 GATGGCTGCTAGTACTTGGCCCTTATATTGG-CCTCTTTCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19378100 CCCCCTTAAAGAGCATTTAAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19378165 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTTGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
19378230 GCATGCCAAAAAAAATACAAGGATCACGTATAAAAAGTTTGGGCCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
19378295 TTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAAAAAACCAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19378360 CCATGAAAGTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19378424 TGGCACACAAATAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
586 TGGCACGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19378489 CATCCCGTCTCTCTGGCC-AGCGTAGTGCCTGCCCGCCCGCCCGCCGGCTCATTTCATCGGTTGG
650 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * *
19378553 TTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGCGGCAGCAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * * *
19378618 TGGTAGAACGCAGTGGGGGACCCGACCGATCCCCTG-CTTGCGCATCCCGCCCCTCTGGCCAGTT
779 CGACAGCACGCAGAGGGGGACCCGGCCGATCCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19378682 GAGCGGCCGCACTCTCATATT-TTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
843 GAGCGCCCGCACGCTCGT-TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * ** * *
19378743 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGGTCAAGGGTTGTTGCAGCACATACTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
19378808 CTCGGGCATGGGATGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
* *
19378873 ACCTGACCGACGACATTGGGGTTCCCG-CGATCGGGGGCGCCGTGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTT-CCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
** *
19378937 GCGATTAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19379002 CACCCCCTTAAA-AGAAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
259 CACCCCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19379066 ATGGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
19379131 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
19379196 AAATTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
19379261 TTGCCATGAAACTTCACGTGAAGTCTTAAGGGGCCATTGTATCAATTTACAAGCCATAAGAATGC
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19379326 CATTGGCATGTAGAAATATGAAGATGTGCCTAATCCCACCTGCCACGCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19379391 CGCATCCCATCTCTCTAGCCGGA-GTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
648 CGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
* * * ** * * *
19379455 GGCATAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGTGACAGTAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * * * * *
19379520 ATCGGCAGCACGAAGAGGTGGACCCAGTCGATCCCC-AGCTTGCGTATCCCACCCCTATGCCCGG
777 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
19379584 CTAAGCGCTCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGCGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19379647 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19379712 CTTGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
* * * * *
19379777 ACTTGATCGACGGCATTGGGGTTTCGACGATC-GGGGAGCC-GGGGGTGTGCCCACATTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA-TGATGTG
*
19379840 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19379905 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCAGTAGCCATTAAAATGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAA
* *
19379969 ATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
19380033 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
19380098 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19380163 TTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATG
* *
19380227 GCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19380292 GCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCG--C-CC-GCTCGTTTCGTCGATT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
* * * * *
19380353 GGCTTAGGCATACGGACTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
19380418 ATCGAGAGGACGTAGAGGGGGACCC-GCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
777 ATCGACAGCACGCAGAGGGGGACCCGGC-CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
19380482 TTGAGCGCCCTCATGCTCGTTTCATAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAG
841 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19380545 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
**** * * * * * * * *
19380610 CTTATTCATGTGCTGGTGCCTCATTTTTATTTGCCAGGGCACCATTGCCGGAGCATC-ACCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGA-CGGAG
* ** * *
19380674 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
19380739 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19380804 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19380869 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19380934 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
19380999 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19381064 GCCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19381129 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19381194 CATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
* * *
19381255 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTT-----A-C-GG--C
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
19381311 -A-A-CACGCAGAGGGGGATCCGACCGATCCCCAACTTGCGCATCCTGCCACTTTTGCCGGCAGA
780 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
19381373 TCGCCCGTACGCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATTTCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
19381432 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAACCGAGGGTTGTGATAGGACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19381496 GCTCAGGCATGTGCTGGTGCCTCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAG
* * * *
19381561 AACCTGACC-AGCGGCATTGGGTTTCTGGCGATCGGGGGGGGCGGGGGGTTGTGCGCACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATG
* * *
19381625 TGTGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19381690 ACACCCCCTTAAA-AGGAATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
258 ACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19381754 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
19381819 TTGTGCATGCCAAAAAAAATACAAGGATCACG--T--C---TTT-GGGTCAAAACTCCTTTCAAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
19381876 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
19381941 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
19382006 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * * * *
19382071 GCGCATCCCGTCTCTCTGGTCGACGTAGTACCCGCCCGTCCGGTCGCCCGCTCATTTCGCCAGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
* ** **
19382136 GGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAACAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
19382201 ATCGAGAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGC
777 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* ** ** *
19382266 TAAGCGCCCTAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19382328 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19382393 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGCCACCATTGCCAGAGCATC-ACCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGA-CGGAG
* ** ** * *
19382457 AACCTGACCGACGGCATTAGGGTTTTGGTGATC-AGGAGG-CGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19382520 TGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19382585 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19382650 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19382715 TGCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
19382780 ATTTTAAAAAATCCCAAATCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
19382845 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
19382910 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGCGATTCACAGCTTCCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * **
19382975 CATCCTGTCTCTCTAGCAGGCGTAGTGCTCGCCCGCCCGCCCGCCTGCTCGTTTCGTTAGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
** * * * * * *
19383040 TTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACAGTAGCAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
19383105 GACAGCACACAGAGGGGGACCCGACTGATCCCCGACTTACGTATCCCACCCCTCTGGCCGGTTGA
780 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** *
19383170 GCGCCTACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
19383229 GCATATGAAGTTCATTCCCAGTCTAACATTGGACC-GAACCGAGGGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
** * *
19383293 GCTTAGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGACGGA
* *
19383357 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGACCAGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* *
19383422 TACGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19383487 ACACCCCTTTAAA-AGGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 ACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19383551 AATGGGGACACTTTTTTTAAATGGCCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
19383616 TTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
19383680 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATG-AAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
19383744 CTTG-CATGAAACTTCAAGTGAAGGCTTAA-GGACCGTTGTATGAATTTACAAGCCA-GGAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
19383806 GCCCATTGGCATGTAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCCACGG
582 G--CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCAC-G
* * * * *
19383871 GCTGGCGCAATTCCGTTCTCTCTGG-CTAGCGTAGTGCCCGTCCCCGCCGCCCGCCCGCCCCGCC
643 GCTTGCGC-ATCCCG-TCTCTCTGGCCGA-CGTAGTGCCCG----C-CCGCCCGCCCG-CCTGCT
* * *
19383935 CG-TTCGTTCGTCTGTGGCTTAGG-ATACAGAG-TCA-TCCCAGTCTAAGATTCAGGACGGGACC
699 CGTTTCG-TCG-GT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCA-GACCGGACC
* * * * ** *
19383996 GAGGGTTTACGGCAACAGGATCGGCCAAGTACATAGAGGGGGACCCTGTCCGATCCCCG-CTT-C
759 GAGGG-TTGCGGCAGCAGGATC-GAC-AGCACGCAGAGGGGGACCC-GGCCGATCCCCGACTTGC
* * * *
19384059 GCATTCCCGCCCCTCTGGCCGGCTGAACGCCCGCATGTTCGTTTCATTGGTTGACTTAGGCATAC
820 GCA-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
19384124 AGAGTTCATTCCCAGTGTAA
884 GGAGTTCATTCCCAGTCTAA
* * * * *
19384144 GCATATGGAGTTCATTCCCGGTCTAAGATCGAATCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
19384191 ACGATAGTAG
Statistics
Matches: 7907, Mismatches: 1009, Indels: 294
0.86 0.11 0.03
Matches are distributed among these distances:
880 224 0.03
881 3 0.00
884 74 0.01
886 2 0.00
887 243 0.03
888 229 0.03
889 2 0.00
890 2 0.00
891 2 0.00
892 2 0.00
893 229 0.03
894 10 0.00
895 15 0.00
896 235 0.03
897 5 0.00
898 384 0.05
899 595 0.08
900 189 0.02
901 1073 0.14
902 1114 0.14
903 727 0.09
904 1102 0.14
905 422 0.05
906 8 0.00
907 2 0.00
908 2 0.00
909 3 0.00
910 455 0.06
911 35 0.00
912 19 0.00
913 34 0.00
914 5 0.00
915 131 0.02
916 18 0.00
917 311 0.04
918 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGACGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19377854 original size:26 final size:26
Alignment explanation
Indices: 19377817--19377869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19377807 GTTGACTTAG
*
19377817 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19377843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19377869 G
1 G
19377870 ATCGCTGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19378474 original size:901 final size:903
Alignment explanation
Indices: 19374221--19384190 Score: 12799
Period size: 904 Copynumber: 11.1 Consensus size: 903
19374211 GTTGAGTTAG
* * ** *
19374221 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19374286 CTCGGGCATGTGTTGGTGTCACCTTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19374351 ACCTGACCGGCGGTATTGGGTTTCCGACGATCGGGGTGGCCGCGGGGGTGTACGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
19374416 CGATGGGTGCTGGTACTTGACCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19374481 A-CCCCTTAAAGGGCGTTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAA
*
19374544 TGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ***
19374609 ATGCATACGAACAAAAATACGCCGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * *
19374673 AAGTTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
454 AA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19374738 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19374803 CATTGGCAGGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
19374868 CGCATCCCGTCTCTCTGGCAGGCGT--TG--TACCCGCCCGCCCGCACGCTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
19374929 GCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCGGACC-GAATCGAGGGTTGCGGTAGCAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACT-GAGGGTTGCGGCAGCAGG
* * ** * *
19374993 ATCGACAACACGCAGAGGGGGA-ATGAGCTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGG
777 ATCGGCAGCACGCAGAGGGGGACCCG-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
19375057 CTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19375120 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGACAGCACGA-GTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC-ATGCTGG
* * * ** * *
19375184 GCTCAGGCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
19375249 AACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGTGGGGGGTGTGCGCACAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-----CGGGGGGTGTGCGCACAT
* *
19375314 GATGTGCGATGGCTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
19375379 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
19375444 TGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCTAGTTTTTAGTTGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
19375509 TTTTTGTGCATGCCAACAAAAATGA-AAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCATC
384 TTTTTGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
19375573 CGAAAAAATTTAAAAAAATCCC-AAGTCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
448 CGAAAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
* * * *
19375637 GTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAGGCCATAA
512 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
19375702 AAATGGCATTGGCACACA-AAACTATGAAGTTGTGCTTAAACCCACCTACCAGCCTATCGATCCA
577 AAATGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
19375766 CGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCCCGCCCGCCCGC
641 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT------GCCCGCCCGCCCGCCCGCCCGC
* * * * *
19375831 TCGTTTCATCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGTTC-AGACCAGACAGAG
698 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAG
* * * * ** * *
19375895 GGTTGTGGCAGCAGGATCGACAGCATGTAGAGGCAGACCCGGTCGATCCCTGGCTTGCGCATCCC
762 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* * *
19375960 GCCCCTCTGGCCTGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
827 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
**
19376025 TTCTTAGTCTAA
892 TTCCCAGTCTAA
* *
19376037 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
19376102 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCATCGGAGCATTGCCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
19376167 ACCTGATCGGCGGTATTGGGGTTCCGACGATC-GGGGGCCCGGGGGGGTGTGTGCACATGGT-TG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
** ** *
19376230 CGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAAGTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19376295 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTTGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19376360 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19376425 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACATTTCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
* * *
19376489 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19376554 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19376619 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
19376684 GCGTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCTCGCCTGTTCATTTTGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * ** * * *
19376749 CTTAGCCATACGGAGTTCATTCCTAGTCTAAGATCGGGCCGCACCAAGGGTTCCGGTAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGAT
** * * * * *
19376814 CAACAGCACGTAGAGGGGGACTCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTG
779 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
19376879 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19376939 GCATACAGAGTTGATTCCTC-GTCTAAGATCGGACCAGACTGAGGGTTGCGGAAGCACATGCTGG
1 GCATACGGAGTTCATTCC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19377003 GCTC-GACAATGTGCTGATGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATC-ACTG
65 GCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGG
* * ** *
19377065 CGAACCAGACCGACACCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
**
19377130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19377195 ACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCTAGTAGCCACTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19377260 ATGGGGACACTTTTTTTCGAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
323 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * ** * *
19377325 TTGTGTATGCCAAAAAAAATACAAGGATCATGTCCAAAAATTTTGGGGCTAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19377390 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA-AATTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCG
* * * * *
19377454 TCTTGCCATGAAACATCACGTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAACAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19377519 GGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCTCCCTATCGATCCACGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * *
19377584 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCATCCGCACGCCCGCCCTCTCGTTTCTTTGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
19377649 TGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATCGAACCGAACTGTA-GGTTGCGGTAGAA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTG-AGGGTTGCGGCAGCA
* * * *
19377713 GGATTGGCAGCACGCAGAGCGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCATTTTGGCC
775 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCC
* * *
19377778 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19377843 GCATACGGAGTTCATTCCCAGTCTAAGATC-G-CTGGACCGATGGTTACGGCAGCACATGCTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19377906 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCTTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
19377971 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
19378036 GATGGCTGCTAGTACTTGGCCCTTATATTGG-CCTCTTTCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19378100 CCCCCTTAAAGAGCATTTAAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19378165 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTTGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
19378230 GCATGCCAAAAAAAATACAAGGATCACGTATAAAAAGTTTGGGCCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
19378295 TTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAAAAAACCAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19378360 CCATGAAAGTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19378424 TGGCACACAAATAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
586 TGGCACGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19378489 CATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCGGCTCATTTCATCGGTTGGT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
19378554 TTAGGCATACGGAGTTGATTCCCAGTCTAAGATC-AGACTGGACAGAGGGTTGCGGCAGCAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
19378618 TGGTAGAACGCAGTGGGGGACCCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCAGTTG
779 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
19378683 AGCGGCCGCACTCTCATATT-TTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
844 AGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * ** * *
19378743 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGGTCAAGGGTTGTTGCAGCACATACTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
19378808 CTCGGGCATGGGATGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
19378873 ACCTGACCGACGACATTGGGGTTCCCG-CGATCGGGGGCGCCGTGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTT-CCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
** *
19378937 GCGATTAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19379002 CACCCCCTTAAA-AGAAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
259 CACCCCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19379066 ATGGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
19379131 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
19379196 AAATTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
19379261 TTGCCATGAAACTTCACGTGAAGTCTTAAGGGGCCATTGTATCAATTTACAAGCCATAAGAATGC
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19379326 CATTGGCATGTAGAAATATGAAGATGTGCCTAATCCCACCTGCCACGCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19379391 CGCATCCCATCTCTCTAGCCGGAGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
19379456 GCATAGGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGAATTGAGGGTTGTGACAGTAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTTGCGGCAGCAGG
* * * * * * * * *
19379520 ATCGGCAGCACGAAGAGGTGGACCCAGTCGATCCCCAGCTTGCGTATCCCACCCCTATGCCCGGC
777 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
19379585 TAAGCGCTCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGCGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19379647 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19379712 CTTGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19379777 ACTTGATCGACGGCATTGGGGTTTCGACGATC-GGGGAGCC-GGGGGTGTGCCCACATTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA-TGATGTG
*
19379840 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19379905 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCAGTAGCCATTAAAATGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAA
* *
19379969 ATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19380033 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
19380098 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19380163 TTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATG
* *
19380227 GCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19380292 GCGCATCCCGTCTCTCTGGCCGACGTAGT----ACCCGCCCGCCCGCCCGCTCGTTTCGTCGATT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
19380353 GGCTTAGGCATACGGACTTCATTCCCAATCTAAGATC-AGATCGGA-TCGAGGGTTGCAGCAGCA
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACT-GAGGGTTGCGGCAGCA
* *
19380416 GGATCGAG-AGGACGTAGAGGGGGACCC-GCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
775 GGATCG-GCAGCACGCAGAGGGGGACCCGGC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
19380479 CGGTTGAGCGCCCTCATGCTCGTTTCATAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
838 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
19380544 G
903 A
* * * * *
19380545 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
**** * * * * * * * * *
19380610 CTTATTCATGTGCTGGTGCCTCATTTTTATTTGCCAGGGCACCATTGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
19380675 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCTGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19380740 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
19380805 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19380870 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19380935 GCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
19381000 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19381065 CCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19381130 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGCGATCCACGGCTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
19381195 ATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
19381256 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTT-----------A-CG
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * ** * * * * * *
19381309 GCAACACGCAGAGGGGGATCCGACCGATCCCCAACTTGCGCATCCTGCCACTTTTGCCGGCAGAT
781 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * *
19381374 CGCCCGTACGCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATTTCCAGTCTAA
846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
19381432 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGATAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19381497 CTCAGGCATGTGCTGGTGCCTCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19381562 ACCTGACC-AGCGGCATTGGGTTTCTGGCGATCGGGGGGGGCGGGGGGTTGTGCGCACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGT
* * *
19381626 GTGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19381691 CACCCCCTTAAA-AGGAATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
259 CACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19381755 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19381820 TGTGCATGCCAAAAAAAATACAAGGATCACG--T--C---TTT-GGGTCAAAACTCCTTTCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
19381877 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
19381942 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
19382007 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** * * *
19382072 CGCATCCCGTCTCTCTGGTCGACGTAGTACCCGCCCGTCCGGTCGCCCGCTCATTTCGCCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * **
19382137 GCTTAGGCATACGGACTTCATTCCCAGTCTAAGATC-AGACCGGATTGAGGGTTGCAACAGCAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTTGCGGCAGCAGG
* * * *
19382201 ATCGAG-AGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGG
777 ATCG-GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * *
19382265 CTAAGCGCCCTAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19382328 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
19382393 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGCCACCATTGCCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** ** * * *
19382458 ACCTGACCGACGGCATTAGGGTTTTGGTGATC-AGGAGG-CGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19382521 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19382586 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19382651 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19382716 GCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * ** * *
19382781 TTTTAAAAAATCCCAAATCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19382846 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
19382911 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAGCGATTCACAGCTTCCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * **
19382976 ATCCTGTCTCTCTAGCAGGCGTAGTGCTCGCCCGCCCGCCCGCCTGCTCGTTTCGTTAGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * * *
19383041 TAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACAGTAGCAGGATCG
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * * * * *
19383106 ACAGCACACAGAGGGGGACCCGACTGATCCCCGACTTACGTATCCCACCCCTCTGGCCGGTTGAG
781 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * *
19383171 CGCCTACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
19383229 GCATATGAAGTTCATTCCCAGTCTAACATTGGACCGAACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
19383294 CTTAGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* *
19383358 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGACCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
19383423 ACGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19383488 CACCCCTTTAAA-AGGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19383552 ATGGGGACACTTTTTTTAAATGGCCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19383617 TGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
19383681 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATG-AAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * **
19383745 TTG-CATGAAACTTCAAGTGAAGGCTTAA-GGACCGTTGTATGAATTTACAAGCCA-GGAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19383807 CCCATTGGCATGTAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCCACGGG
583 --CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCAC-GG
* * ** *
19383872 CTGGCGCAATTCCGTTCTCTCTGGCTAGCGTAGTGCCCGTCCCCGCCGCCCGCCCGCCCCGCCCG
644 CTTGCGC-ATCCCG-TCTCTCTGGCCGGCGTAGTGCCCG----C-CCGCCCGCCCG-CCCGCTCG
* * * * *
19383937 -TTCGTTCGTCTGTGGCTTAGG-ATACAGAG-TCA-TCCCAGTCTAAGATTCAGGACGGGACCGA
701 TTTCG-TCG-GT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TC-GAACCGGACTGA
* * * ** *
19383998 GGGTTTACGGCAACAGGATCGGCCAAGTACATAGAGGGGGACCCTGTCCGATCCCC-GCTT-CGC
761 GGG-TTGCGGCAGCAGGATCGG-C-AGCACGCAGAGGGGGACCC-GGCCGATCCCCGGCTTGCGC
* * * * * *
19384061 ATTCCCGCCCCTCTGGCCGGCTGAACGCCCGCATGTTCGTTTCATTGGTTGACTTAGGCATACAG
822 A-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
19384126 AGTTCATTCCCAGTGTAA
886 AGTTCATTCCCAGTCTAA
* * * *
19384144 GCATATGGAGTTCATTCCCGGTCTAAGATCGAATCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
19384191 ACGATAGTAG
Statistics
Matches: 7904, Mismatches: 1027, Indels: 264
0.86 0.11 0.03
Matches are distributed among these distances:
880 224 0.03
881 3 0.00
884 73 0.01
886 2 0.00
887 247 0.03
888 229 0.03
893 227 0.03
894 8 0.00
895 6 0.00
896 239 0.03
897 5 0.00
898 396 0.05
899 607 0.08
900 186 0.02
901 1073 0.14
902 1099 0.14
903 730 0.09
904 1101 0.14
905 424 0.05
906 7 0.00
908 2 0.00
909 4 0.00
910 455 0.06
911 35 0.00
912 20 0.00
913 23 0.00
914 4 0.00
915 132 0.02
916 15 0.00
917 325 0.04
918 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19378753 original size:26 final size:26
Alignment explanation
Indices: 19378717--19378769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19378707 GTTGACTTAG
*
19378717 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19378743 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19378769 G
1 G
19378770 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19379651 original size:26 final size:26
Alignment explanation
Indices: 19379621--19379673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19379611 GTTGACTTAG
*
19379621 GCATACAGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19379647 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19379673 G
1 G
19379674 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19380546 original size:26 final size:26
Alignment explanation
Indices: 19380516--19380569 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
19380506 TAGGTTGACT
*
19380516 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19380542 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19380568 TA
1 TA
19380570 AGATCAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19381437 original size:26 final size:26
Alignment explanation
Indices: 19381408--19381458 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19381398 TGACTTAGGT
*
19381408 ATACGGAGTTCATTTCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19381434 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19381459 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19382339 original size:26 final size:26
Alignment explanation
Indices: 19382302--19382354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19382292 GTTGACTTAG
* *
19382302 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19382328 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19382354 G
1 G
19382355 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19383233 original size:26 final size:26
Alignment explanation
Indices: 19383203--19383254 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19383193 GTTGACTTAG
*
19383203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19383229 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19383255 CATTGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19384338 original size:26 final size:26
Alignment explanation
Indices: 19384302--19384354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19384292 GTTGACTTAG
*
19384302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19384328 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19384354 G
1 G
19384355 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19384374 original size:184 final size:185
Alignment explanation
Indices: 19384032--19384374 Score: 467
Period size: 184 Copynumber: 1.9 Consensus size: 185
19384022 AAGTACATAG
* * *
19384032 AGGGGGACCCTGTCCGATCCCCGCTTCGCATTCCCGCCCCTCTGGCCGGCTGAACGCCCGCATGT
1 AGGGGGACCCTGTCCGATCCCCGCTTCGCATTCCCGCCCCTCTAGCCGGCTGAACGCCCGCACGC
** * **
19384097 TCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGCATATGGAGTTCATTCC
66 TCGTTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
* *
19384162 CGGTCTAAGATCGAATCGGACCGAGGGTTACGATAGTAGGATCGGATGCACGCAA
131 CAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGTAGGATCGGATGCACGCAA
* * * * *
19384217 AGGGGGACCC-GTCCGATCCCCGACTTGTGCA-TCTC-TCCCTCTAGTCGGCTGAGCGCCCGCAC
1 AGGGGGACCCTGTCCGATCCCCG-CTT-CGCATTCCCGCCCCTCTAGCCGGCTGAACGCCCGCAC
* *
19384279 GCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
64 GCTCGTTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * *
19384344 CCCAGTCTAAGATCGGACCTGACTGAGGGTT
129 CCCAGTCTAAGATCGAACCGGACCGAGGGTT
19384375 GCAGCAGCAC
Statistics
Matches: 136, Mismatches: 20, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
184 117 0.86
185 16 0.12
186 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (185 bp):
AGGGGGACCCTGTCCGATCCCCGCTTCGCATTCCCGCCCCTCTAGCCGGCTGAACGCCCGCACGC
TCGTTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGTAGGATCGGATGCACGCAA
Found at i:19385224 original size:26 final size:26
Alignment explanation
Indices: 19385184--19385247 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
19385174 TCATGGGTTG
*
19385184 TCCCAGTCTAGGCATACGGAGTTCAT
1 TCCCAGTCTAAGCATACGGAGTTCAT
*
19385210 TTCCAGTCTAAGCATACGGAGTTCAT
1 TCCCAGTCTAAGCATACGGAGTTCAT
*
19385236 TCCCAATCTAAG
1 TCCCAGTCTAAG
19385248 ATCGAACCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
TCCCAGTCTAAGCATACGGAGTTCAT
Found at i:19388045 original size:26 final size:26
Alignment explanation
Indices: 19388016--19388068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19388006 GTTGACTTAG
19388016 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19388042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19388068 G
1 G
19388069 TCAGATCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19388786 original size:58 final size:57
Alignment explanation
Indices: 19388655--19388950 Score: 385
Period size: 58 Copynumber: 5.0 Consensus size: 57
19388645 TCTTGTGTAG
*
19388655 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTGGAAATTTA-TTTTTAA
*
19388715 GGAAAATTAATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTGGAAATTTATTTTTAA
* * **
19388773 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
*** *
19388833 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAATTTATTTTTAA
*
19388891 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTCTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTT-TGGAAA-TTT-ATTTTTA
19388951 TTTAAAGAAA
Statistics
Matches: 209, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
58 92 0.44
59 30 0.14
60 80 0.38
61 7 0.03
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:19388865 original size:118 final size:118
Alignment explanation
Indices: 19388657--19388947 Score: 415
Period size: 118 Copynumber: 2.5 Consensus size: 118
19388647 TTGTGTAGGG
* * **
19388657 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTTAAGGAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGA-TTTCCAAGGAAAA
* * *
19388721 TTAATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAAGA
65 TTAATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
*
19388775 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
* * *
19388840 TGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAAGG
66 TAATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
* * *
19388893 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTCTGGAAATTTTGATTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-TTGAAAATTTGATTT
19388948 TTATTTAAAG
Statistics
Matches: 156, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
118 141 0.90
119 15 0.10
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
TAATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAAGA
Found at i:19389040 original size:16 final size:16
Alignment explanation
Indices: 19389002--19389041 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
19388992 AGTAAAACAA
19389002 AAATAAAAATGAAATT
1 AAATAAAAATGAAATT
19389018 AAGATAAAAA-GAATATT
1 AA-ATAAAAATGAA-ATT
19389035 AAATAAA
1 AAATAAA
19389042 CCTAATCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (16 bp):
AAATAAAAATGAAATT
Found at i:19390090 original size:9 final size:9
Alignment explanation
Indices: 19390076--19390105 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
19390066 ATATTACAAG
19390076 AAAAATAAT
1 AAAAATAAT
19390085 AAAAATAAT
1 AAAAATAAT
*
19390094 AATAATAAT
1 AAAAATAAT
19390103 AAA
1 AAA
19390106 TAAATTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATAAT
Found at i:19390122 original size:21 final size:20
Alignment explanation
Indices: 19390079--19390128 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
19390069 TTACAAGAAA
19390079 AATAAT-AA-AAATAATAAT
1 AATAATAAATAAATAATAAT
*
19390097 AATAATAAATAAATTATAAT
1 AATAATAAATAAATAATAAT
19390117 ATATAATAAATA
1 A-ATAATAAATA
19390129 TAGAACTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 6 0.21
19 2 0.07
20 10 0.36
21 10 0.36
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATAATAAATAAATAATAAT
Found at i:19390155 original size:17 final size:17
Alignment explanation
Indices: 19390095--19390159 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
19390085 AAAAATAATA
19390095 ATAATA-ATAAATAAATT
1 ATAATATATAAATAAA-T
19390112 ATAATATAT-AATAAAT
1 ATAATATATAAATAAAT
19390128 ATAGAACTATATAAATAAA-
1 AT--AA-TATATAAATAAAT
*
19390147 AT-ACATATAAATA
1 ATAATATATAAATA
19390160 TTAACAGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
15 9 0.21
16 4 0.10
17 12 0.29
18 4 0.10
19 7 0.17
20 6 0.14
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAATATATAAATAAAT
Found at i:19390223 original size:27 final size:27
Alignment explanation
Indices: 19390170--19390231 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
19390160 TTAACAGAAA
*
19390170 AAAATAAATAAATAAGTAAAAATATACAT
1 AAAAT-AAT-AATAAATAAAAATATACAT
*
19390199 ATAATAATAATAAATAATAAA-ATACAT
1 AAAATAATAATAAATAA-AAATATACAT
19390226 AAAATA
1 AAAATA
19390232 CAAAAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 19 0.66
28 6 0.21
29 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAATAATAATAAATAAAAATATACAT
Found at i:19390454 original size:13 final size:11
Alignment explanation
Indices: 19390429--19390478 Score: 66
Period size: 11 Copynumber: 4.4 Consensus size: 11
19390419 AACATTGTCA
19390429 TTTTTTGTTTT
1 TTTTTTGTTTT
19390440 TTTTTTGTGTCTT
1 TTTTTTGT-T-TT
19390453 TTTTTTGTTTT
1 TTTTTTGTTTT
19390464 TTGTTTT-TTTT
1 TT-TTTTGTTTT
19390475 TTTT
1 TTTT
19390479 ATACCGAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
10 2 0.06
11 18 0.50
12 6 0.17
13 10 0.28
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:19390455 original size:23 final size:25
Alignment explanation
Indices: 19390424--19390470 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
19390414 AACTCAACAT
19390424 TGTC-ATTTTTTGTTTTTT-TTTTG
1 TGTCTATTTTTTGTTTTTTGTTTTG
*
19390447 TGTCTTTTTTTTGTTTTTTGTTTT
1 TGTCTATTTTTTGTTTTTTGTTTT
19390471 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.81
Consensus pattern (25 bp):
TGTCTATTTTTTGTTTTTTGTTTTG
Found at i:19390463 original size:18 final size:16
Alignment explanation
Indices: 19390436--19390478 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
19390426 TCATTTTTTG
19390436 TTTTTTTTTTGTGTCTT
1 TTTTTTTTTTGTGT-TT
*
19390453 TTTTTTGTTTTTTGTTT
1 TTTTTT-TTTTGTGTTT
19390470 TTTTTTTTT
1 TTTTTTTTT
19390479 ATACCGAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 3 0.12
17 14 0.58
18 7 0.29
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (16 bp):
TTTTTTTTTTGTGTTT
Found at i:19390625 original size:42 final size:41
Alignment explanation
Indices: 19390487--19390701 Score: 340
Period size: 41 Copynumber: 5.1 Consensus size: 41
19390477 TTATACCGAA
* *
19390487 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
*
19390530 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
**
19390571 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGCAAATT
1 GCTCCTCTAAACAGAGGCACCACGA-CTTTGGAAAATAAATT
19390613 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
19390654 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
19390696 GCTCCT
1 GCTCCT
19390702 TGACAATCAT
Statistics
Matches: 161, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
41 72 0.45
42 62 0.39
43 27 0.17
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:19390630 original size:83 final size:83
Alignment explanation
Indices: 19390487--19390701 Score: 344
Period size: 83 Copynumber: 2.6 Consensus size: 83
19390477 TTATACCGAA
* *
19390487 GCTCCTCTAAACAGAGGCTCAACGA-CTTTGAGAAA-CATAAATTGCTCCTCTAAACAGAGGCAC
1 GCTCCTCTAAACAGAGGCACCACGACCTTTG-GAAAGC--AAATTGCTCCTCTAAACAGAGGCAC
*
19390550 CACGACTTTTGAAAATAAATT
63 CACGACTTTGGAAAATAAATT
19390571 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGCAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGCAAATTGCTCCTCTAAACAGAGGCACCAC
19390636 GACTTTGGAAAATAAATT
66 GACTTTGGAAAATAAATT
* *
19390654 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGCAAATTGCTCCT
19390702 TGACAATCAT
Statistics
Matches: 124, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
83 91 0.73
84 27 0.22
85 6 0.05
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACCTTTGGAAAGCAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAATAAATT
Found at i:19391977 original size:17 final size:17
Alignment explanation
Indices: 19391952--19391994 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
19391942 AATCTCTTTT
*
19391952 TTTCATTTTCTCATTTC
1 TTTCTTTTTCTCATTTC
**
19391969 TTTCTTTTTCTTTTTTC
1 TTTCTTTTTCTCATTTC
19391986 TTTCTTTTT
1 TTTCTTTTT
19391995 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCTTTTTCTCATTTC
Found at i:19391983 original size:7 final size:7
Alignment explanation
Indices: 19391949--19392005 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
19391939 TTGAATCTCT
19391949 TTTTTTC
1 TTTTTTC
*
19391956 ATTTTCTC
1 -TTTTTTC
19391964 ATTTCTTTC
1 -TTT-TTTC
19391973 -TTTTTC
1 TTTTTTC
19391979 TTTTTTC
1 TTTTTTC
19391986 TTTCTTT-
1 TTT-TTTC
19391993 TTTTTTC
1 TTTTTTC
19392000 TTTTTT
1 TTTTTT
19392006 TCATCATCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
6 7 0.16
7 20 0.47
8 13 0.30
9 3 0.07
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:19392005 original size:10 final size:10
Alignment explanation
Indices: 19391965--19392006 Score: 66
Period size: 10 Copynumber: 4.1 Consensus size: 10
19391955 CATTTTCTCA
*
19391965 TTTCTTTCTT
1 TTTCTTTTTT
19391975 TTTCTTTTTT
1 TTTCTTTTTT
19391985 CTTTCTTTTTT
1 -TTTCTTTTTT
19391996 TTTCTTTTTT
1 TTTCTTTTTT
19392006 T
1 T
19392007 CATCATCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 20 0.67
11 10 0.33
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:19392006 original size:11 final size:11
Alignment explanation
Indices: 19391973--19392006 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
19391963 CATTTCTTTC
19391973 TTTTTCTTTTT
1 TTTTTCTTTTT
*
19391984 TCTTTC-TTTT
1 TTTTTCTTTTT
19391994 TTTTTCTTTTT
1 TTTTTCTTTTT
19392005 TT
1 TT
19392007 CATCATCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:19392029 original size:14 final size:13
Alignment explanation
Indices: 19391946--19392036 Score: 62
Period size: 14 Copynumber: 6.8 Consensus size: 13
19391936 AATTTGAATC
19391946 TCTTTTTTTCATTT
1 TCTTTTTTTC-TTT
**
19391960 TC-TCATTTC-TT
1 TCTTTTTTTCTTT
19391971 TCTTTTTCTT-TTT
1 TCTTTTT-TTCTTT
*
19391984 TCTTTCTTTTTTTT
1 TCTTT-TTTTCTTT
**
19391998 TCTTTTTTTCATCA
1 TCTTTTTTTC-TTT
19392012 TCTTTTTTCTCTTT
1 TCTTTTTT-TCTTT
19392026 TCTTATTTTTC
1 TCTT-TTTTTC
19392037 ATCCATTGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
11 4 0.07
12 2 0.03
13 20 0.33
14 28 0.47
15 6 0.10
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:19396001 original size:59 final size:58
Alignment explanation
Indices: 19395902--19396188 Score: 324
Period size: 60 Copynumber: 5.0 Consensus size: 58
19395892 TCTTGTGTAG
* *
19395902 GGAAAATTGATACTTTCAACTTTTCCCCAAATATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* *
19395961 GGAAAAATGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAAATTTATTTTTAA
* **
19396020 GGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 -GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATA-TTTTTTTGAAAATTT-ATTTTTAA
* ***
19396081 GGAAAATTGATACTTTCAACTTTT-CCTCAAAA-CCCTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
*
19396136 GG-AAA-TGATAC-TTCAAC-TTTCCCT-AAAAT-TTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAAATTT-ATTTTTA
19396189 TTTAAAGAAA
Statistics
Matches: 199, Mismatches: 20, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
51 12 0.06
52 10 0.05
53 11 0.06
54 10 0.05
55 8 0.04
56 5 0.03
57 6 0.03
59 62 0.31
60 69 0.35
61 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:19396025 original size:60 final size:58
Alignment explanation
Indices: 19395902--19396188 Score: 333
Period size: 59 Copynumber: 5.0 Consensus size: 58
19395892 TCTTGTGTAG
* * *
19395902 GGAAAATTGATACTTTCAACTTTTCCCCAAATATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGGAAATTTATTTTTAA
*
19395961 GGAAAAATGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGGAAATTTATTTTTAA
* **
19396020 GGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 -GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
* ***
19396081 GGAAAATTGATACTTTCAACTTTT-CCTCAAAA-CCCTTTTT-GAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTTTAA
19396136 GG-AAA-TGATAC-TTCAAC-TTTCCCT-AAAAT-TTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAA-TTT-ATTTTTA
19396189 TTTAAAGAAA
Statistics
Matches: 202, Mismatches: 17, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
51 12 0.06
52 13 0.06
53 9 0.04
54 10 0.05
55 8 0.04
56 3 0.01
57 4 0.02
58 5 0.02
59 73 0.36
60 59 0.29
61 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:19396215 original size:14 final size:14
Alignment explanation
Indices: 19396196--19396248 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
19396186 TTATTTAAAG
*
19396196 AAAATAGAATAATA
1 AAAATAGAAAAATA
19396210 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
19396224 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
19396239 AAAATA-AAAA
1 AAAATAGAAAA
19396249 TGAAATTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.09
14 18 0.56
15 11 0.34
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:19396278 original size:16 final size:16
Alignment explanation
Indices: 19396240--19396279 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
19396230 AGTAAAACAA
19396240 AAATAAAAATGAAATT
1 AAATAAAAATGAAATT
19396256 AAGATAAAAA-GAATATT
1 AA-ATAAAAATGAA-ATT
19396273 AAATAAA
1 AAATAAA
19396280 CCTAATCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (16 bp):
AAATAAAAATGAAATT
Found at i:19398271 original size:20 final size:20
Alignment explanation
Indices: 19398235--19398277 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
19398225 GCGCATCCCA
*
19398235 CCCCTCTGGCCGACTGAGTG
1 CCCCTCTGGCCGACTGAGCG
* *
19398255 CCCCTCTGGCTGGCTGAGCG
1 CCCCTCTGGCCGACTGAGCG
19398275 CCC
1 CCC
19398278 GCACGCTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.07, C:0.44, G:0.30, T:0.19
Consensus pattern (20 bp):
CCCCTCTGGCCGACTGAGCG
Found at i:19398341 original size:26 final size:26
Alignment explanation
Indices: 19398305--19398357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19398295 GTTGACTTAG
* *
19398305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19398331 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19398357 G
1 G
19398358 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19399240 original size:26 final size:26
Alignment explanation
Indices: 19399204--19399256 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19399194 GTTGACTTAG
19399204 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
19399230 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19399256 G
1 G
19399257 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19400421 original size:901 final size:899
Alignment explanation
Indices: 19397560--19406165 Score: 10921
Period size: 897 Copynumber: 9.6 Consensus size: 899
19397550 TACAGGTAGG
* *
19397560 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGCAATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19397625 ACTTTGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
19397689 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19397754 CAAATGGTCACAAAATCTTATACGCTTCGAGTTTTTAGATAAATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
19397819 AATACAAGGATCACGTTTACAAAGTTTGGGGTCAAAACGCCTTCCGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * * * * * * *
19397884 TGAACCGCAAAAATTTTTAAAAATCATGAAAAATTGAAAACGATTCATCTCGCCATGAAACTCCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
19397949 CGTGAAGCCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
19398014 TATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
19398079 GG-CTGGCGTAGT----GACCG-CCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACAGAGTT
520 GGTC-GGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
19398138 CATTCCCAGTATAAGATCGTACCAGACCGAGGGTTGCGGTAGCAAGATCAACAGCACGTAGAGGG
584 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * *
19398203 GGACCCAGTTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCCCCTCTGGCTGG
649 GGACCCGGTCGATCCCCGGCTTGCG-----CA------T--CC--C-----GCCCCTCTGGCCGG
19398268 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
694 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
19398333 ATACAGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACAAGCTGGGCT
759 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCT
* *
19398398 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
823 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
*
19398463 CTGATCGGCGGC
888 CTGACCGGCGGC
* *
19398475 ATTGGGGTTTCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19398540 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAT
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
19398605 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19398670 CAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
19398735 AATACAAGGATCATGTCTGCCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
19398800 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
19398865 CGTGAAGGCTTAAGGGACCATTGCATGAATTTAGAAGCCATAAAAATGGCATTGGCATACAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
19398930 TATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGGGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
19398995 GGTCGGCGTAGTGCCCGCCCG-CCCGCCCACTCGTTTCGTCGGCTGGCTTAGGCATACGGAGTTC
520 GGTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * * *
19399059 TTTCCCAGTCTAAGATCACACCAGACTGAGGGTTGCGGCAGCAAGATCGATAGCACGTAGAGGGG
585 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * *
19399124 GACCC-GACTGATCCCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTCAT
650 GACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
19399187 TTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTTATTCCCAGT
714 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
19399252 CTAAGATCAGATCAGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGATGCCG
779 CTAAGATCGGA-CCGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
19399316 CATTTTTCTTTGTCGAGGCACCATCGACGGAGCATCGCCGGAGAACCTGTCCGACAGG-
842 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC-GGC
* ** * *
19399374 ATTAGGGTTTTGGCGATCGGGGGGGCC-GGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
19399438 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
19399503 CATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGGAATGGGGACATTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19399568 CAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGTCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
19399633 AACACAAGGATTACGTCTACCAAGTTTGAGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
261 AATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * ** * * *
19399698 AAACCGCAAAATGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
326 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *** *
19399763 GTGAAGGCTTAAGGCACCATTGTATGAAGTGACAAGCCATAAAAATGGCATTGGCTTGCAGGAAT
391 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* * * *
19399828 ATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCTACAGCTTGTGCATCCCGTCTCTCTG
456 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
19399893 GTCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTTGTTTCTTCGGTTGGCTTAGGCATACGGAGT
521 GTCGGCGTAGTGCCCGCCCG-CC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * *** *
19399958 TCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAAAATTGGTGGCACACAGAGG
583 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * * *
19400023 GGGGCCCGGTCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCG
648 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
19400088 TTTCGTGGGTTGACTTAGG-ATACAGAGTTGATT-CCAGTTTAAGCATACGGAGTTCTTTCCCAG
713 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19400151 TCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCA
778 TCTAAGATCGGACCG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
19400216 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAAGCTGGCCGGTGGC
842 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* *
19400274 ATTGGGGTTCCGACGATCAGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
19400339 ACTTGGCCCTTATATTGGCTCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19400404 CATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19400469 GAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * *
19400534 AATACAAGGATCACGTCTACCAAGTTTGTGGCAAAAAATTCTTTCGAAAAAATTTTAGAAAATCC
261 AATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
19400599 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTGA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* **
19400664 CGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGTAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * *
19400729 TATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
19400794 GGCCGGCATAGTGCCCACCCG-CCCGCCCGCACACTCGTTTCGTTGGTTGGCTTAGGCATACGAA
520 GGTCGGCGTAGTGCCCGCCCGCCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * *
19400858 GTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGA
581 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * * * *
19400923 GGGGGACCCGATCGATCCCCGGCTTGTGCATCCC-CCCCTCTAGCCGACTGAGTG-CCGCACGCT
646 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
19400986 CATTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCAATCCT
711 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** *
19401051 AGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCTAGAATGTGCTGGTGC
776 AGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
19401116 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGC
840 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
19401176 ATTGGGGTTTCGACGATC-GGGGGGTCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19401240 ACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * * *
19401305 CATTTGAGATTTTGCAGGTATGCTACCAGCAGGCATTAAAGTGTCTGAAATGGAGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19401370 CAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
19401435 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATATTAAAAAATCC
261 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * * ** *
19401500 TGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
19401565 CGTGAAGGCTTAAGGGACCGTTGTGTGAATTTACAAGCTATAAAAATGGCATTGGCACACAAAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * * * *
19401630 TATGAAGATGTGCCTAAACCCAACTATCACCCTATCGATCCACGGCCTGCGCATCCCATCTTTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
19401695 GG-CTGACGTAGT----GCCCG-CCTGTCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTT
520 GGTC-GGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
19401754 CATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA-AGGG
584 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * * * * * * * * *
19401818 GGTGCCTGATCGATCCGCAGCTTGCGCATCCCGCTCCTCTAGTCGACTGAGCACCCGTACGCTCA
649 GG-ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
19401883 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C--A----A-----A-
713 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * *
19401934 -C------C--A--GACCGAGGTTTATGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGC
778 TCTAAGATCGGACCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
19401988 ATTTTTCTTCGTTGGGGCACCAACGCCGAAGCATCGTCGGAGAACCTGACCGGCGGT
843 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
19402045 ATTGTGGTTCCGACGGTCGGGGGGGCC-GGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19402109 ACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGACCTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
19402174 CATTTGAGATTTTGCAGGTATGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGTGACACTTTATT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19402239 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCGTGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * ** * *
19402304 AATAGAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCTTTTCAAAAAAGGTTTAAAATATCT
261 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
19402369 CGAACCGCAAAAAGTTTCCAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
19402434 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * * *
19402499 TATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCCTACGAATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
19402564 GGTCGGCGTAGTGCCCGTCCG-CTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
520 GGTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
19402628 ATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGCAGCAGGATAGGCAGCACGCAGAGGGG
585 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * *
19402693 GACCTGGCCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCCTGCTGAGCGCCCGCACTCTCGTT
650 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
19402758 TCGTGGGCTGACTTAGGCATACGAAGCTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCTGTC
715 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * * * * ** * *
19402823 TAAGATCAAACCAAACCAAGGGTTACGGCAACACATGCTGGGCTTTGGCATGTGCTGGTGTCGTA
780 TAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* ** * * * *
19402888 TTTTTCTTCATCGGGGCACCATCGTCAAAGCATCACCGGAGAACCTGATCGGGGGA
844 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* ** *
19402944 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGTGGGTGTGCGCACAAAATGTGGGATGGGTGCTGG
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19403009 TACTT-GCCCTAATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
19403073 GCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
19403138 TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
19403203 AAATACGAGGATCACGTCTACCAATTTTAGGGCCAAAAATCCTTCCAAAAAAAATTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* **
19403268 CCTAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
324 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
19403333 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCATAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * * *
19403398 GTATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGCATACCGTCTCTC
454 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * *
19403463 TGCTAGGCGTAGAGCCCGCCCG-CCCGGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGCGTT
519 TGGTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** * * *
19403527 CATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAACAGTAGGATCTACAGCACGTAGAGGG
584 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
** * * * *
19403592 GGACCCGACCTATCCCCGGCTTGTGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGT
649 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
19403657 TTCGTGGGCTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGT
714 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
19403722 CTAAGATCGGACCAGACTGAGGGTTACGATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG-
779 CTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
** *
19403786 -TTTTTCTTCACCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCAGC
843 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * ** *
19403831 ATTGGGGTTCCGATGAT---TGGGGTCGGGGTGGGTGTGCGCACAAAATGTGGGATGGGTGCTGG
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
19403893 TACTTGGCCCATATATTGGCCCATACATTGGCCCCCTATCCTTCATCAAACTTTGAGAACTCACA
65 TACTTGGCCC-----TT-----AT--ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19403958 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTG
118 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19404023 GGAACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
183 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19404088 GCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGCGGCCAAAAATCCTTCCAAAAAAA
248 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCAAAAAAA
* * ** ** * * *
19404153 TTTAAAAAAATCCTGAACTACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTG
312 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19404218 CCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
377 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
19404283 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCCATCCATAGCTTGCGC
442 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
19404348 ATCCCGTCTCTTTGGCCGGC-TAGTGCCCGCCCG-CCTGTCCACTCGTTTCATCGGTTGGCTTAG
507 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
19404411 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCAAGGGTTGCGGCAGTAGGACCGATA
572 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
19404476 GCATGCAGAAGGGGACCCGATCGATCTCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGAGC
637 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19404541 CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
702 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
19404606 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCTAGGCTTGGGCATG
767 TTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
** * *
19404671 TGCTGGTGATGCATTTTTCTT-GTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGG
831 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
19404735 CGGC
896 CGGC
* * * *
19404739 ATTGAGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATTATGTGCGATGGGAGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19404803 ACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTAACACCCCCTGAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
19404868 CATTTGAGATTTTACAGGTTTGCTGCCAATAG-CACTTAAAGTGTCTGAAATGGGGACAC-TTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
19404931 TCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTAAATTTTTTTTTTGCATGCGAACA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACA
* * *
19404996 AAAATACAAGGATAACGTCTACCAAGTTTGGGGTCAAAACTCTTTCCAAAAAAATTTTAAAAAAT
259 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** * *
19405061 CCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCT
323 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * ** *
19405126 CACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGTAAA
388 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * * * *
19405191 AATATGAAGATGTGCCTAAACCCACATACCACTCTATCGATCAACAGCATGCGCATCCGGTCTCT
453 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
19405256 TTGGCCGCGCGTAGTGCCCGCCCGCCTGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
518 CTGGTCG-GCGTAGTGCCCGCCCGCC--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** * * * *
19405321 AAGTTCATTCCCACTCTAAGATCGGACCCGATTGAGGGTTGAGGCAACAGGATCGATAGCACACA
579 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
*
19405386 GAGGGGGACCCGGTCAATCCCCGGCTT--G-----CG-----C---CC-GC--A-------CA--
644 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * ** *
19405424 TTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
709 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * **
19405489 CCAGTTTAAGATCGAACCGGACCGAGGGTTAAGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
774 CCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * ** * *
19405554 GTCGCATTTTTCTTCTTTGAGTCACCATCGCCGGAGCATTACAGGAGAACCTGACCGACGGC
838 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
*
19405616 ATTGGGGTT-CGACGATC-GGCGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19405678 ACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19405743 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19405808 CAAATGGTCATAAAATCCTATACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** **
19405873 AATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTACGAAATCC
261 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* ** ** * *
19405938 CGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAATTTCA
325 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
19406003 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
390 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
*
19406068 TATGAAGATGTGCCTAAACCCACCTACCCCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
455 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
**** * *
19406133 GCAAAGCGTAGTGCTCGCCC-ACCCGCCCGCTCG
520 GGTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCG
19406166 CTTCAAAAAA
Statistics
Matches: 6747, Mismatches: 833, Indels: 267
0.86 0.11 0.03
Matches are distributed among these distances:
869 561 0.08
870 17 0.00
871 2 0.00
872 1 0.00
873 184 0.03
874 23 0.00
875 404 0.06
876 176 0.03
877 45 0.01
878 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
884 48 0.01
885 5 0.00
887 34 0.01
888 3 0.00
890 2 0.00
891 2 0.00
892 7 0.00
893 109 0.02
894 19 0.00
895 55 0.01
896 323 0.05
897 1010 0.15
898 279 0.04
899 349 0.05
900 870 0.13
901 873 0.13
902 538 0.08
903 108 0.02
904 3 0.00
905 1 0.00
906 2 0.00
908 34 0.01
909 38 0.01
910 3 0.00
911 5 0.00
914 2 0.00
915 76 0.01
916 407 0.06
917 4 0.00
919 6 0.00
920 114 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GTCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
Found at i:19401042 original size:26 final size:26
Alignment explanation
Indices: 19401006--19401058 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19400996 GCTGACTTAG
*
19401006 GCATACGGAGTTCATTCAC-AGTCTAA
1 GCATACGGAGTTCAATC-CTAGTCTAA
19401032 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
19401058 G
1 G
19401059 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:19403711 original size:26 final size:26
Alignment explanation
Indices: 19403674--19403726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19403664 GCTGACTTAG
*
19403674 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19403700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19403726 G
1 G
19403727 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19403913 original size:12 final size:12
Alignment explanation
Indices: 19403896--19403926 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
19403886 GTGCTGGTAC
*
19403896 TTGGCCCATATA
1 TTGGCCCATACA
19403908 TTGGCCCATACA
1 TTGGCCCATACA
19403920 TTGGCCC
1 TTGGCCC
19403927 CCTATCCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.29
Consensus pattern (12 bp):
TTGGCCCATACA
Done.