Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 107 of 117
Found at i:19552419 original size:26 final size:26
Alignment explanation
Indices: 19552389--19552440 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19552379 TTGGCTTAGT
19552389 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19552415 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19552441 ATCAGACCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19553316 original size:26 final size:26
Alignment explanation
Indices: 19553280--19553332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19553270 GTCGACTTAG
*
19553280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19553306 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19553332 G
1 G
19553333 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19553686 original size:897 final size:890
Alignment explanation
Indices: 19551517--19556109 Score: 5844
Period size: 899 Copynumber: 5.1 Consensus size: 890
19551507 GTTGACTTAG
* * * * *
19551517 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCAAGGGTTGTGACAGCACATGCTGGG
* ** * **
19551582 CTCGGGCATGTGTTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19551647 ACCTGACCGGCGGCATTAGGGTTCC-GACAATCGGGGGGGCCGGAGGGGTGTGCGCAAATGATGT
129 ACCTGACCGGCAGCATTGGGGTTCCAG-CGATC-GGGGGGCCAG-GGGGTGTGCGCACATGATGT
* *
19551711 GCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTGTCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCA
* *
19551776 CA-CCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19551840 AGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
19551904 ATGCATGCCAACAGAAATACAAGGATCACTTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19551969 AATTCTAAAAAATCTCGAACCGCAAAACA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
448 AATTTTAAAAAATCTCGAACCGTAAAA-AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19552033 TTGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19552097 GATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
577 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19552162 CGCATCCCGTCTTTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
642 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * ** * * *
19552227 AGGCATACGGAGTCCATTCCCAATCTAAGATCGGGCCGGACAAAAGGTTGCGGCAGTAGGATTGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGAC-TGAGGTTGCAGCAGCAGGATCGG
* * * * * * *
19552292 CAGTACGTAGAGGGGGACCCGACTGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGGTTGAGA
771 CAGCACGCAGAGGGGGACCC-AGTGATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19552357 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAA
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19552414 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCACCAAGGGTTG-CAGCAGCACATGCTGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCAAGGGTTGTGA-CAGCACATGCTGG
**
19552478 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTAGGGCACCA---T-----CA---CCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
19552532 AACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGTCGGGGC-GGGGGTGTGCGCATAT
128 AACCTGACCGGCAGCATTGGGGTTCCAG-CGATC-GGGGGG-C----CAGGGGGTGTGCGCACAT
* *
19552595 GATGTGCGATGGGTG-TCGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAACCTTGAG
186 GATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAG
*
19552658 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGT
249 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * **
19552723 TTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAAATGAAT
314 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
19552788 TTTTTTGTACATGCCAACAAAAATACAAGGATTACGTCT-AAGTTTGGGGCCAAAACTCCTTCCG
379 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
19552852 AAAAAATTTTAAAAAATCTCAAATCGTAAAAAATTTTGAAAATCGTGAAAAATAAAAAACGGGTA
444 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
19552917 GTCTT-CCAATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
509 GTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
19552981 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGG
573 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
19553046 CTTGCGCATCCTGTCTCTATGGCCGGCGTAGTGCCAGCACGCCCACCCGCCCGCTCGTTTCGTCG
638 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--C-CGCCCACCCGCCCGCTCGTTTCGTCG
* * * **
19553111 GTTGGCTAAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGCATTATAGCAGC
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAG-GTTGCAGCAGC
* * * * *
19553176 AGGATCGACAGTACACAGAGGGGGACCCAGTGAATGCCTGGCTTGTGCATCTCGCCCCTCTGGCC
763 AGGATCGGCAGCACGCAGAGGGGGACCCAGTG-AT-CCTGGCTTGCGCATCCCGCCCCTCTGGCC
* *
19553241 GGCTGAGCGCCCGAACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19553306 GCATACAGAGTTCATTCTCAGTCTAAGATCGGATCAGACCAAGGGTTGTGACAGTACATGCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACCAAGGGTTGTGACAGCACATGCTGGG
* * *
19553371 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCGAGGCACCATCGTTGGAGCATCGCCGGAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
19553436 CCTGACCAGCAGCATTAGGGTTCCAGTGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
130 CCTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
* * * *
19553501 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAACTAACACCC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCC
* * *
19553566 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
19553631 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19553696 AGCCAAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAATTT
390 TGCC-AAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * *
19553761 TTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCA
452 TTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19553826 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19553891 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
582 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * *
19553956 TTCGTCTCTCTAGCCAGCGTAGTGCCCG----CCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCA
647 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
19554017 TACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTACAGTAGCAGGATCGGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGA-GGTTGCAGCAGCAGGATCGGCAGCA
* * * * *
19554082 CGCAGAGGGGGAACCGGCCGATTCCTGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
776 CGCAGAGGGGGACCCAG-TGA-TCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
19554147 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19554199 G-AT-C--AG---A---C---C--AGA-C---T--G---AA-GGTTGCGGCAGCACATGTTGGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGACAGCACATGCTGGGC
** * * **
19554239 TCATGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGTCGGAGCTTCATCGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCGGGGCACCATC-GTCGGAGCATCGCCGGAGA
* * * *
19554304 ACCTGACCGGCAGCATTGGGGTTCCAGCGATCGTGGGGTCGGGGGGTGTGCGCGCATGATGTGCG
129 ACCTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
* * *
19554369 ATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACAC
* * *
19554434 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19554499 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19554564 CATGCCAAAAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAG
388 CATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
19554629 TTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
451 TTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
19554694 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
19554759 GGCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
581 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19554824 TCCCGTCTCTCTGGCCGACGTAGT--------ACCCGTCCGCTCGTTTCATCGGTTGGCTTAGGC
646 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19554881 ATACGGAGTTCATTCCCAGTCTAAGATCT-GACCAGACTTAGGGTTGCAGTAGCAGGATCGACAG
711 ATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCGGACTGA-GGTTGCAGCAGCAGGATCGGCAG
* * * *
19554945 CACGTAGAGGGGGACCCAGTCGATCCTCGACTTGCGCATTCCGCCCCTCTGGCTGGCTGAGCGCC
774 CACGCAGAGGGGGACCCAGT-GATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
19555010 CGTACGCTCCTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19555064 GCATACGGAGTTCATTCCAGTCTAAGAGCAGA-CTGGACCGAGGGTTATGGCAGCACATGCTATG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGATC-GGACCAAGGGTTGTGACAGCACATGCT-GG
* * * *
19555128 G-TCGGGCATGTACTGGTGCTGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
19555192 AACCTGACCGACAGCATTGGGGTTCCAACGATCGGGAGGGCCAAGGGGGTCGGGGGGTGTGCACA
128 AACCTGACCGGCAGCATTGGGGTTCCAGCGATCGGG-GGGCC-A--------GGGGGTGTGCGCA
* *
19555257 CATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
183 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TC
* *
19555322 AGAACTCACACCCCCTTAACGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGT
247 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGT
* * *
19555387 GTCT-AGAATGGGGACAGTTTTTTCAAATGGTCAGAAAATCTCGTACACTTCGAGTTTTTAGCTG
312 GTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
19555451 AATTTTTTTATGCATGCCAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
376 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCC
* * * *
19555516 TTCCCAAAAAATTCTGAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
439 TTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
19555580 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
503 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
19555645 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTC
568 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * *
19555710 CACTACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACCCGCTCATTT
633 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCACCCGCCCGCTCGTTT
* * * * * * * *
19555775 TGTTGATTGGCTTCGGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAAGGTTGCA
694 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTG-AGGTTGCA
* * * ** *
19555840 GCAGCATGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTC
758 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGT-GAT-CCTGGCTTGCGCATCCCGCCCCTC
* * * * * *
19555905 TGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTCAGGTATACGGAGTTCATTCCCAA
821 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
19555970 TCTAA
886 TCTAA
* * *
19555975 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTG-CAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACCAAGGGTTGTGA-CAGCACATGCTGG
* * * *
19556039 GGTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGAAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCGTCGGAGCATCGCCGGAG
19556104 AACCTG
128 AACCTG
19556110 TCCGATAGTG
Statistics
Matches: 3260, Mismatches: 323, Indels: 211
0.86 0.09 0.06
Matches are distributed among these distances:
864 4 0.00
865 189 0.06
866 3 0.00
867 48 0.01
868 13 0.00
869 384 0.12
870 139 0.04
871 1 0.00
872 1 0.00
873 1 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 3 0.00
881 1 0.00
882 1 0.00
886 48 0.01
887 107 0.03
888 149 0.05
889 216 0.07
890 93 0.03
891 18 0.01
892 267 0.08
893 193 0.06
894 5 0.00
896 1 0.00
897 286 0.09
898 43 0.01
899 469 0.14
900 3 0.00
901 234 0.07
902 34 0.01
903 1 0.00
910 1 0.00
911 197 0.06
912 98 0.03
913 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGTTGCAGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCAGTGATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19555089 original size:25 final size:26
Alignment explanation
Indices: 19555038--19555089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19555028 GTTGACTTAG
19555038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19555064 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19555089 G
1 G
19555090 AGCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19555981 original size:26 final size:26
Alignment explanation
Indices: 19555951--19556001 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19555941 TGACTCAGGT
19555951 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
* *
19555977 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
19556002 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:19560651 original size:19 final size:18
Alignment explanation
Indices: 19560612--19560668 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 18
19560602 ACAATGGATG
19560612 AAAAATGAGAAAAGAGAA
1 AAAAATGAGAAAAGAGAA
19560630 AAAAGATGATGAAAA-AGGAA
1 AAAA-ATGA-GAAAAGA-GAA
* *
19560650 AAAAA-GAAAAAAAAGAA
1 AAAAATGAGAAAAGAGAA
19560667 AA
1 AA
19560669 TGAAAGAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
17 9 0.26
18 7 0.21
19 6 0.18
20 12 0.35
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.05
Consensus pattern (18 bp):
AAAAATGAGAAAAGAGAA
Found at i:19560699 original size:17 final size:17
Alignment explanation
Indices: 19560641--19560699 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
19560631 AAAGATGATG
* *
19560641 AAAAAGGAAAAAAAGAA
1 AAAAAGGAGAAAATGAA
19560658 AAAAA--AGAAAATGAA
1 AAAAAGGAGAAAATGAA
* *
19560673 AGAAATGAGAAAATGAA
1 AAAAAGGAGAAAATGAA
19560690 AAAAAGGAGA
1 AAAAAGGAGA
19560700 TTCAAATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 12 0.34
17 23 0.66
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (17 bp):
AAAAAGGAGAAAATGAA
Found at i:19562016 original size:41 final size:41
Alignment explanation
Indices: 19561940--19562275 Score: 487
Period size: 41 Copynumber: 8.1 Consensus size: 41
19561930 ATAATTGTAA
*
19561940 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
19561982 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
19562023 AGGATCAATTTACTTTCCAAAAGTCGTAGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
19562065 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
19562106 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
19562147 AGGAGTAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
19562188 AGGAGCAATTTATTTTCAAAAGTCGTGGTGTCTCTG-TTAA
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
19562228 AGGAGCAATTTATGTTTCTC-AAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
19562270 AGGAGC
1 AGGAGC
19562276 TTTGGTAAAA
Statistics
Matches: 268, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 16 0.06
41 190 0.71
42 62 0.23
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:19562288 original size:1 final size:1
Alignment explanation
Indices: 19562282--19562332 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
19562272 GAGCTTTGGT
* * * * *
19562282 AAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAACACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
19562333 TGACAATGTT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:19562311 original size:21 final size:20
Alignment explanation
Indices: 19562282--19562332 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
19562272 GAGCTTTGGT
19562282 AAAAAAAAAAAAAAAAACAA
1 AAAAAAAAAAAAAAAAACAA
* *
19562302 AAACAAAAAACAAAAAAACAC
1 AAA-AAAAAAAAAAAAAACAA
19562323 AAAAAAAAAA
1 AAAAAAAAAA
19562333 TGACAATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAAAAAACAA
Found at i:19562316 original size:23 final size:22
Alignment explanation
Indices: 19562282--19562332 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
19562272 GAGCTTTGGT
19562282 AAAAAAAAAAAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAACAAAA
* *
19562304 ACAAAAAACAAAAAAACACAAAA
1 A-AAAAAAAAAAAAAAAACAAAA
19562327 AAAAAA
1 AAAAAA
19562333 TGACAATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAAACAAAA
Found at i:19562570 original size:21 final size:20
Alignment explanation
Indices: 19562546--19562687 Score: 67
Period size: 21 Copynumber: 6.5 Consensus size: 20
19562536 ATGATTTTAT
19562546 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATAT-TA
19562567 TATTT-TTACTTATT-TATT-
1 TATTTATTA-TTATTATATTA
* * *
19562585 TATTTATTTATTTTTCTGTTAA
1 TATTTA-TTATTATTATATT-A
*
19562607 TATTTA-TATGTATTTTATTTA
1 TATTTATTAT-TATTATA-TTA
*
19562628 TATAGTTCTATATTTATTATATATTA
1 TAT--TTAT-TA-TTA-T-TATATTA
19562654 TAATTTATTTATTATTATTATTA
1 T-ATTTA-TTATTATTA-TATTA
*
19562677 TTTTTATTATT
1 TATTTATTATT
19562688 TTTCTTGTAA
Statistics
Matches: 94, Mismatches: 9, Indels: 36
0.68 0.06 0.26
Matches are distributed among these distances:
18 5 0.05
19 5 0.05
20 15 0.16
21 23 0.24
22 14 0.15
23 9 0.10
24 3 0.03
25 8 0.09
26 7 0.07
27 5 0.05
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (20 bp):
TATTTATTATTATTATATTA
Found at i:19562585 original size:4 final size:4
Alignment explanation
Indices: 19562541--19562597 Score: 50
Period size: 4 Copynumber: 14.8 Consensus size: 4
19562531 ATTTTATGAT
* *
19562541 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
19562587 TTTA TTTA TTT
1 TTTA TTTA TTT
19562598 TTCTGTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
3 11 0.25
4 29 0.66
5 4 0.09
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:19562659 original size:17 final size:18
Alignment explanation
Indices: 19562620--19562675 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 18
19562610 TTATATGTAT
*
19562620 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATATA
19562640 TTTATTATATATTATA-A
1 TTTATTATATATTATATA
19562657 TTTATT-TATTATTAT-TA
1 TTTATTATA-TATTATATA
19562674 TT
1 TT
19562676 ATTTTTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 2 0.06
17 16 0.48
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATTATATATTATATA
Found at i:19562688 original size:9 final size:9
Alignment explanation
Indices: 19562661--19562690 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
19562651 TTATAATTTA
19562661 TTTATTATT
1 TTTATTATT
*
19562670 ATTATTATT
1 TTTATTATT
19562679 TTTATTATT
1 TTTATTATT
19562688 TTT
1 TTT
19562691 CTTGTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTATT
Found at i:19563323 original size:20 final size:19
Alignment explanation
Indices: 19563277--19563324 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
19563267 TCGGTGAACT
*
19563277 TCTGGTGAAAAAATCCAGA
1 TCTGGTGAAAAAACCCAGA
* * *
19563296 TTTCGTGACAAAACCCAGAA
1 TCTGGTGAAAAAACCCAG-A
19563316 TCTGGTGAA
1 TCTGGTGAA
19563325 TCTTCAACCG
Statistics
Matches: 21, Mismatches: 7, Indels: 1
0.72 0.24 0.03
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (19 bp):
TCTGGTGAAAAAACCCAGA
Found at i:19563771 original size:17 final size:17
Alignment explanation
Indices: 19563751--19563790 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
19563741 TTTGTTTTAC
*
19563751 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
19563768 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
19563782 TTTTCTTTA
1 TTTTCTTTA
19563791 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:19563775 original size:14 final size:14
Alignment explanation
Indices: 19563737--19563785 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
19563727 AATTTTATTT
* *
19563737 TATTTTTGTTTTAC
1 TATTTTTATTTTTC
*
19563751 TTTTCTTTATTTTTC
1 TATT-TTTATTTTTC
*
19563766 TATTTTTATTATTC
1 TATTTTTATTTTTC
19563780 TATTTT
1 TATTTT
19563786 CTTTAAATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (14 bp):
TATTTTTATTTTTC
Found at i:19563952 original size:113 final size:114
Alignment explanation
Indices: 19563793--19564074 Score: 398
Period size: 113 Copynumber: 2.5 Consensus size: 114
19563783 TTTCTTTAAA
19563793 TAAAAATCAAAATTTCCAAAAAAATATTTTT---AAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 TAAAAATCAAAATTT-CAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
*
19563855 TAAATTTTC-AAAA-A-TTTTTGAGAAAAGTTGAAAGTATCAATTTTCCT
65 TAAATTTCCAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCT
** * *
19563902 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTC-AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
*
19563967 ATAAATTTCCAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
64 ATAAATTTCC-AAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCT
* * *
19564019 TAAAAAT-AAATTTTCAAAAAAGTATTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
19564075 CTACACAAGA
Statistics
Matches: 152, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
108 1 0.01
109 26 0.17
113 38 0.25
114 25 0.16
115 17 0.11
116 8 0.05
117 37 0.24
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (114 bp):
TAAAAATCAAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
AAATTTCCAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:19564006 original size:57 final size:56
Alignment explanation
Indices: 19563793--19564074 Score: 360
Period size: 57 Copynumber: 5.0 Consensus size: 56
19563783 TTTCTTTAAA
19563793 TAAAAATCAAAATTTCCAAAAAAATATTTTT---AAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTCCAAAAAAAT-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
19563849 TAAAAATAAATTTTC--AAAAA-TTTTTGAGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAAATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
19563902 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAA-TTTCCAAAAAAAT-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
19563962 TAAAAATAAATTTCCAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAA-ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
19564019 TAAAAATAAATTTTCAAAAAAGTATTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTCCAAAAAAAT-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
19564075 CTACACAAGA
Statistics
Matches: 200, Mismatches: 14, Indels: 23
0.84 0.06 0.10
Matches are distributed among these distances:
50 5 0.03
52 5 0.03
53 30 0.15
54 10 0.05
55 3 0.01
56 8 0.04
57 82 0.41
58 16 0.08
59 11 0.05
60 30 0.15
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (56 bp):
TAAAAATAAATTTCCAAAAAAATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:19564686 original size:26 final size:26
Alignment explanation
Indices: 19564657--19564709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19564647 CTCGGTCCGA
19564657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19564683 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19564709 C
1 C
19564710 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19566500 original size:26 final size:26
Alignment explanation
Indices: 19566462--19566514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19566452 CCGGTCTGAT
19566462 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
19566488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19566514 C
1 C
19566515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19569165 original size:26 final size:26
Alignment explanation
Indices: 19569129--19569179 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19569119 TTGGTCTGAT
19569129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19569155 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19569180 CCCTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19569679 original size:897 final size:895
Alignment explanation
Indices: 19564579--19571111 Score: 8638
Period size: 897 Copynumber: 7.3 Consensus size: 895
19564569 ATGCTCTGAT
* * * * *
19564579 GATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGATCCCAGCATGTGCTACCGCA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
19564644 ACCCTC-----GGTCCGA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTC
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
19564703 TGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCACTCAGTCGGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * *
19564768 ACAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCATGCTGCCGCAACCC-TCGTC
196 -GAAGCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTC
* ** * * *
19564832 TGGTCCGATCTTAGA-TTGGAATGAACTCTATATGCCGAAGCCAATCGACAAAACGAGCAGGCGG
259 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGG
* *
19564896 GTGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCTC-TGGATCGATAGGGTG
324 GCGGGC--G-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC-CGTGGATCGATAGGGTG
* * * *
19564960 GTAGGTTGGTTTAGGGACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
385 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
19565025 CATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTC
450 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* *
19565090 ACGA-TTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAGAATTTTTTCGGAAAGGAGTTTTGGC
515 ACGATTTTTC-AAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGC
* *
19565153 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAAC
577 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
19565218 TCGAAGTGTTCGAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
642 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
19565283 ACTGGCAGCAAACTTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATG
707 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
19565348 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCC
772 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
** * *
19565413 CGCCAGCCCCCTCGATCATCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGACGATGCTCCGAC
836 C-CC-GCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-C
* * ** * * ** **
19565477 GATGGTGCCACGGTGAAGAAAAATGCAGCACCAGTACATGCCCGGGCATAGCATGTGCTGCCATA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * * *
19565542 ACCCTCGGTCTAGCCTGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGTGAATGAACTC
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
19565607 CATCTGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * ** * **
19565672 GCAAGTCGAGGATCAGTCGAGTCCCCCTTTGCGTGTTGCTAATCCTACTACCGTAACCCTCAGTC
196 G-AAGCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTC
* **
19565737 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATTAAACGAGCGGGCGG
259 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGG
* *
19565802 ACGGGC-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAG
324 GCGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
19565866 GTGGGTTTAGGCACATCTTCATATTATTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
389 GTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
19565931 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACATGACTCGTTTTCTATTTTTCATGA
454 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * * * *
19565996 TTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAATTTTTTTCGGAAGAATTTTTGGCCCCAAAC
519 TTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* *
19566061 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
584 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
19566126 GTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAAAGGCTACTGGTA
649 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
19566191 GCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTTAGTTCTTGAGGTTTGATGAGGGATA
714 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
19566255 AGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCACACATCATGTGCACACACAGCCCCCCCA
779 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACA--CCCCCC-
* * * * * ** *
19566319 GTCCCCCTGATCACTGGAACCCCAACGCTGCCGGTCAGGTTCTCCGGTGAAGCTCCGAC
839 G-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-C
* * * *
19566378 GATGGTGCCCCGGTGAAGAAAAATGTAGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCACA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * *
19566443 ACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
19566508 CGTATGCCTAAGTCAACCCAC-AGAATGAGCGTGTGGGCGCTCAGCCAGCCGGAGGGGCAGGATG
131 CGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * *
19566572 CCCAAGCCGGGGATCGG-CTAGTTTTCCATCTGTGTGCTGCCGATCCTGCTACCGTAACCCTTGG
195 -CGAAGCC-GGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGG
** * * * *
19566636 TCCAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAACCCAACCGACAAAATGAGCGGGC
257 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC
*
19566701 GGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGT
322 GGGCGGGC-GG--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
19566766 GGTAGGTGGGTTTAGGAACATCTTCATATTATTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
384 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
19566831 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGAGGACTCGTTTTCTATTTTT
449 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
**
19566896 CACGATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGCA-TTTTGGCC
514 CACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCC
*
19566960 CCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACT
578 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
19567024 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
643 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
19567089 CTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGTGTTCTGGAGGTTTGATGA
708 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
19567154 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCGCAAACCC
773 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-A-TGTGCGCACACCC
* * * * * *
19567219 TCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCAGT
836 CCCGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GC
* * * * * ***
19567281 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCTAGCCCAGCATGTTCTGTTACA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
19567346 A-CC-C-------TCAG-TC-----C--------AA-TCCG-AT-CTTAGACTGGGAATGAACTC
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
19567385 CGTATGCCTAAGTCGACCCACGAAACGAGCGTTCGGGCACTCAGTCGGCCAGAAGGGCGGGACGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * **
19567450 GTAAGCTAGGCATCGGTCGGGTCCCTCTTTGTGTGCTGCCGATCCTGCT-GCGTAACGCTCAGT-
196 G-AAGC-CGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTC
* * ** * *
19567513 TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCCT-AGACAACCGATGAAACGAGAGGAC
259 T-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGACAAAACGAGCGGGC
* **
19567577 GGGCGGGC-GGGCACTACGCCGGGTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
322 GGGCGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
19567641 AGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCA
387 AGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
19567706 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
452 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
19567771 GA-TTTTCAAAACTTTTTGCGGTTCG-GTATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC
517 GATTTTTC-AAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * * *
19567834 AAACTTGGTAGACATGATACTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
580 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
19567899 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC-GTACACTTTAATGGCTAC
645 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTAC
* *
19567963 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTGGAGGTTTGATGAG
709 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
19568028 GGATAGGGGGCCAATATAAGGGCTAAGTACCAGCTCCCACCGCACATCATGTGCGCACATCCCCC
774 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * *
19568093 GGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGT
838 CGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GC
** * * * * *
19568152 GATGGTGCCCCGACAAAGAAAAATATGACACCAGCACATGCCCAAGCCTAGCATGTTCTGCCGCA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * *
19568217 ACCCTCGGTTTGGTCCAATTTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* *
19568282 CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * *
19568347 ACAAGCCGAGGATCGGCCAGTTCCCCCTCTGCGTGGTGCCGATCCCGCTACCATAACCCTCGGTC
196 -GAAGCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTC
* * *
19568412 TGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
259 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGG
** *
19568473 GCGGGC-GGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
324 GCGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
19568537 GTGGGTTCAGGCATATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
389 GTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
19568602 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACCCGTTTTATATTTTTCACAA
454 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
19568667 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG-GAGGAAGTTTTGGCCCCAAA
519 TTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCCCCAAA
*
19568731 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT-AAAACGTCGAA
583 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAA
* *
19568795 GTGTACAAGATTTTGTGACCATTTGAAAAAA-TTTCCCCATTTCAGACACTTTAATGGATACTGG
647 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
19568859 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
712 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
19568924 TAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCAACGCACATCATGTACGCACACCGCCCCGC
777 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGC
* * *
19568989 CCCCCAATCGCCGGAACCACAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCAGC
841 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GC
* * * * * * *
19569045 AATGGTTCCTCGATAAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCAAGCATGTGCTGTCGCA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
19569110 ACCCTTGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
19569175 CGTATCCCTAAGTGAACCCATGAAACGAGCGTGCCGGCACTTAGCCGGCCAGAGGGGCAGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
19569240 GAAGCCAGGGATCGGTCGGGTCCCCCTTTACGTGCTGCCGATCCTGCTGCTGTAACCCTTGGTCT
196 GAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTCT
* * ** *
19569305 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCGTAAGCCAACTAACAAAACGAGTGGGCGGG
260 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG
*
19569370 CGGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
325 CGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
19569435 TGGGTTTAGGCATATCTTCATATTTTTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATAC
390 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
19569500 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACCCGTTTTCTATTTCTCACAAT
455 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
19569565 TTTTCAAACTTTTTACGGTTCGAGATTTTTTACAATTTTTTCAAAAGGAGTTTTGGCCCCAAACT
520 TTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * *
19569630 TGTTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAACCTCGAAGTG
585 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
19569695 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAG
650 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
19569760 CAAACCGGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
715 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
19569825 GGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
780 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
* *
19569890 CTAATCGCCGGAACCACAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGAC
845 C-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-C
* * * * * *
19569942 AATGGTTCCCCGACGAAGAAAAATGTGCCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
19570007 ACCCTTGGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAACT
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-AACT
* * * * * *
19570072 TCGTATCCCTATGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
19570137 CGAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTCCTGCCAATCCTGCTGCCGCAACCCTTGGTC
195 CGAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTC
* * * *
19570202 TGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACTGACGAAACGAGCGAGGCG
259 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGA-GCG
* *
19570267 GGCGGGCGGGCGGGCGGGTACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
319 GGCGGGCGGGC--G-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * *
19570332 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCAATTTCATGGCTTGTA
381 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
19570397 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
446 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
19570462 TTTCACGA-TTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
511 TTTCACGATTTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * * * *
19570526 GCCCCAAACCTGGTAAACTTGATCCCTGTA-TTTTGTTGGC-TGGCATAAAACAATTCAGCTAAA
575 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAA
**
19570589 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATTTGTCCCCATTTCAGACACTTTAATG
639 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
19570654 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTC
704 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* **
19570719 ATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGTGCCCATCGCACATCATGTGCGCACAC
769 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
19570784 CCCCTCGGGCCGCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
834 CCCC-C--GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-
19570849 C
895 C
* * * * *
19570850 GATAGTGCCCCGGTGAAGAAAATTATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
1 GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
19570915 ATCCTCGGTCTGATCTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
66 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** ** *
19570980 CGTATCCCTAAGTCAACCCATGAAACGAGCGTATGGGCGTTCAGCCAGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
* * * * *
19571045 GAAGTCGGGGATCGGTCGGATCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTAGGTCT
196 GAAG-CCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTCT
19571110 GG
260 GG
19571112 ATCGATAGGG
Statistics
Matches: 4996, Mismatches: 532, Indels: 205
0.87 0.09 0.04
Matches are distributed among these distances:
871 115 0.02
872 268 0.05
873 201 0.04
874 1 0.00
876 68 0.01
877 109 0.02
878 4 0.00
879 3 0.00
880 4 0.00
881 1 0.00
886 1 0.00
888 1 0.00
892 102 0.02
893 376 0.08
894 324 0.06
895 9 0.00
896 14 0.00
897 565 0.11
898 479 0.10
899 35 0.01
900 45 0.01
901 495 0.10
902 226 0.05
903 117 0.02
904 275 0.06
905 547 0.11
906 324 0.06
907 164 0.03
908 123 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGC
GAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGGTCTG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCC
GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGC
Found at i:19570064 original size:26 final size:27
Alignment explanation
Indices: 19570026--19570077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
19570016 TTGATCTGAT
*
19570026 CTTAGACTGGGAATG-AACTCCGTATG
1 CTTAGACTAGGAATGAAACTCCGTATG
*
19570052 CTTAGACTAGGAATGAAACTTCGTAT
1 CTTAGACTAGGAATGAAACTCCGTAT
19570078 CCCTATGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGAATGAAACTCCGTATG
Found at i:19573311 original size:26 final size:26
Alignment explanation
Indices: 19573282--19573334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19573272 CCATTCTGAT
*
19573282 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19573308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19573334 C
1 C
19573335 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19575774 original size:26 final size:26
Alignment explanation
Indices: 19575745--19575797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19575735 CCGATCTGAT
* *
19575745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
19575771 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
19575797 C
1 C
19575798 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:19577472 original size:369 final size:371
Alignment explanation
Indices: 19576785--19577500 Score: 1077
Period size: 369 Copynumber: 1.9 Consensus size: 371
19576775 GTCCGATCCA
*
19576785 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCG
1 ATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGGCG
* * *
19576850 GGCGGGCACTACGCCGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTCTTAGGTGGG
65 GGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGG
* *
19576915 TTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAGAGGCTTGTAAATTCATGCAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAGAGGCTTGTAAATTCATACAATG
* ** *
19576980 GTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTC
195 GTCCTTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCACAATTTTC
* * **
19577045 AAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGT
260 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGAAGAATTGGCCCCAAACTTGGT
* *
19577110 AGACGTGATCCTTGTATTTTTGCTACCGAAACCCTCACTCTGGTCTG
325 AGAAGTGATCCTTGTATATTTGCTACCGAAACCCTCACTCTGGTCTG
* * **
19577157 ATCTTAGACTGGCAATTAACTCCGTATGCCTAAGCCAATCGACG-AA-A-CGAGCGGGCGGGTTG
1 ATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGG
* * * *
19577219 GCGGGCACTATGTCGACCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGG
* *
19577284 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAGT
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATACAAT
19577348 GGTTCC-TTAAGCCTTCACGTGAAGTTTCA-AGCAAGACGACTCATTTTCTATTTTTCACAATTT
194 GG-TCCTTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCACAATTT
* *
19577411 TTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAG-AGAATTGGCCCCCAAACT
258 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGAAGAATTGG-CCCCAAACT
19577475 TGGTAGAAGTGATCCTTGTATATTTG
321 TGGTAGAAGTGATCCTTGTATATTTG
19577501 TTGGCATGCA
Statistics
Matches: 311, Mismatches: 28, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
368 99 0.32
369 161 0.52
370 8 0.03
371 2 0.01
372 41 0.13
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (371 bp):
ATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGG
GCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAGAGGCTTGTAAATTCATACAATGG
TCCTTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCACAATTTTCA
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGAAGAATTGGCCCCAAACTTGGTA
GAAGTGATCCTTGTATATTTGCTACCGAAACCCTCACTCTGGTCTG
Found at i:19577909 original size:26 final size:26
Alignment explanation
Indices: 19577872--19577924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19577862 CCGGTCCGAT
19577872 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
19577898 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
19577924 C
1 C
19577925 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:19578795 original size:26 final size:26
Alignment explanation
Indices: 19578764--19578816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19578754 CTGGTCCAAT
* *
19578764 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19578790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19578816 C
1 C
19578817 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19579619 original size:903 final size:898
Alignment explanation
Indices: 19577151--19581458 Score: 5725
Period size: 903 Copynumber: 4.8 Consensus size: 898
19577141 CCCTCACTCT
* * * * *
19577151 GGTCTGATCTTAGACTGGCAATTAACTCCGTATGCCTAAGCCAATCGACG--A-AACGAGCGGGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGGCAGGC
** * * * *
19577213 GGGTTGGCGGGCACTATGTCGACCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
19577278 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
131 GGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
19577343 ACAGTGGTTCCTTAAGCCTTCACGTGAAGTTTCA-AGCAAGACGACTCATTTTCTATTTTTCACA
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* **
19577407 ATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAA-GAGAATTGGCCCCCA
261 ATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGG-CCCCA
* **
19577471 AACTTGGTAGAAGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCATTTAAAAACTCGA
324 AACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGA
*
19577536 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19577601 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGATTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
19577666 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * *
19577731 -CCCCCCGATCGCCGAAACCTCAATACCGTCGGTCAGGTTCTCCAGCGATGCTCTC-GCGATGGT
583 CCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC-CGGCGATGGT
** * * * *
19577794 GCCCCGACGAAGAAAAATGCATCACCAGCACATGCCCGAGTCCAGCATGTGCTGTCGTAAACCTC
647 G-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
19577859 TGTCCGGTCCGATCTTAGACAGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATG
711 -GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * **
19577924 CCTAAGTTAACCGATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGC
775 CCTAAGTCAACC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* * * *
19577989 C-AGCGATCAGTCGGGTCGCCCTCTACGTGCTGTCGATCCTACTGCCACAACCCTTGGTCC
839 CGAG-GATCAGTCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCC
* * * *
19578049 GGTCTGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACTGATG--A-AAC--G-A-GC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGGCAGGC
* * *
19578107 GGGCTGGCGGGCATTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
19578172 GGTGG-GTGTAGGCACATCTTTATATTTCTGCATGACAATGCCATTTTTATGGCTTCTAAATTCA
131 GGTGGATTG-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
19578236 TACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* * * **
19578301 GATTTTTGAAACTTTTTGTGGTTCGGGGTTTTTTAAAATTTTTTCGAAAGTTGTTTTGGCCCCAA
260 GATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* * * **
19578366 AC-T--TAGATGTGATCCTTGTATTTTTGTTCGCATGCACAAACAAGTTCATTTAAAAACTCGAA
325 ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAA
*
19578428 GTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19578493 CAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTCTGAGTTCTCAAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
*
19578558 TAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCGGC
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * ** *
19578623 CCCCCCGATCACTGAAACCTCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCTTGTGATGGTGC
584 CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
19578688 CTC-AGCGAAGAAAAATGCGGCACCAGCACGTGCCCAAGCCCAGGATGTGCTGCCGCAACCCTCA
649 C-CGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-
* * *
19578752 GTCTGGTCCAATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
711 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
19578817 CTAAGTCAATCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAAGGGCGGGATGCACAAACC
776 CTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
** *
19578882 GAGGATC-GATCAGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCACAACCCTTGGTCC
840 GAGGATCAG-TCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCC
*
19578941 GGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACTAACGGGCAGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AACGGGCAGG
* * * ** *
19579006 CGGGCGGGCAGGCACTACGCCGGGCAGAGCGACGGGATGCGCAAGCCAAGGATCGATAAGGTGGT
65 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
19579071 AAGTGGATTGAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
130 AGGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
19579136 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* *
19579201 GATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAA
260 GATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* * * * * * * **
19579266 ACCTGGTAGACGTCATCCTTTTATTTTTTTTGGCATGCACAAAAACATTTAGCTAAAAATTAAAA
325 ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAA
* * * * *
19579331 GTGTACAAGATTTTGTGAACATTTGAATAAGGTGTCCCCATTTCAGACACTTTAATGGCTCCTGA
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19579396 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
19579461 TAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCACCCCCG
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCG
* * *
19579526 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
582 GCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
** * * * ** *
19579591 GCCC-TTGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATTTGCTATCACAACCCTCG
647 GCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
19579655 ATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGC
712 -TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
19579720 CTAAGTCAAACCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTC
776 CTAAGTC-AACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* * * * * *** * *
19579785 GGGGATCGGTCAGGTCCCCCTCTACGTGATGCTGATCTTGCTGCTGTAACCCTCGGTCT
840 GAGGATCAGTCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCC
* * *
19579844 GGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AACGGGCAGG
* * * * *
19579909 TGGGCGGGCAGGCACTACGTCGGCCAGAGCGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGT
65 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
** *
19579974 AGGTGGATTGAGGCACATCTTCATATTTCTGTGTGCCAATGTCATTTTTATGGCTTGTAAATTCA
130 AGGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * **
19580039 TACAATGGTCACTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCAC
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* * * * * * *
19580104 GATTTTCAAAAATTTTTACGGTTCAGGATTCTTTAAAGTTTTTTTGAAAGGAGTTTTGGCCCCAA
260 GATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
* *
19580169 AATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
325 ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAA
*
19580234 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19580299 CAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTCTGAGTTCTCAAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
19580364 TAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCC-GA
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
19580428 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCTGGCAATGGTGC
584 CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-
** * *
19580493 CCCGGGGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAA-CC-C-T
648 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGT
*
19580555 -T-G---G-TC-----C-----A-G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCT
713 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** * * * * * *
19580598 AAGTCACCCCACAAAACGAACGTGCGACCACTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGG
778 AAGTCA-ACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGA
* * * * * *
19580663 GGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTTGGTCT
842 GGATCAGTCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCC
** * * * * *
19580720 GGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGA-GCG-A-GA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGGCAGGC
* * *
19580782 GGGCCGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * **
19580847 GGTGGGTTTAGGCAGATCTTCATATTTTTGTTTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
131 GGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
19580912 ACTATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGCCTCATTTTCTATTTTTCAAG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * * *
19580977 ATTTTTGAAACTTTTTATGGCTGGGGATTTTTAAAAATTATTTC-AGAAGGAGTTTTGGCCCCAA
261 ATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAA
* * * *
19581041 ACTTGGTAGAAGTGATCCTTGCATTTTTGTTGGCATGCACAAACAAATTTAGCTAAAAAGTTGAA
325 ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAA
*
19581106 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
19581171 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTTTCGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
19581236 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
19581301 CCCCCCGATCGTCAAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-
584 CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* ** *
19581365 CCGACAAAGAAAAATGCGGCACCAGCACATGCCAAAGCCCAGCATGTGCTACCGCAACCCTCAGT
649 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT
* * *
19581430 CCGATTCGATCTTAGACTGGGAATGAACT
713 CTGGTCCGATCTTAGACTGGGAATGAACT
19581459 TCATATGCCT
Statistics
Matches: 3006, Mismatches: 344, Indels: 123
0.87 0.10 0.04
Matches are distributed among these distances:
871 54 0.02
872 467 0.16
873 59 0.02
874 2 0.00
875 2 0.00
876 175 0.06
877 2 0.00
878 3 0.00
880 1 0.00
881 3 0.00
882 1 0.00
886 1 0.00
887 1 0.00
890 3 0.00
891 243 0.08
892 312 0.10
893 7 0.00
894 162 0.05
895 73 0.02
896 5 0.00
897 1 0.00
898 49 0.02
899 1 0.00
900 295 0.10
901 13 0.00
902 50 0.02
903 948 0.32
904 10 0.00
905 63 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAACGGGCAGGC
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
ATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
CTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGAT
CAGTCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCC
Found at i:19579705 original size:26 final size:26
Alignment explanation
Indices: 19579667--19579719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19579657 CTGGTCTGAT
*
19579667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19579693 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19579719 C
1 C
19579720 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19582169 original size:26 final size:26
Alignment explanation
Indices: 19582106--19582176 Score: 126
Period size: 25 Copynumber: 2.8 Consensus size: 26
19582096 CCGGTCGGAT
*
19582106 CTTAAACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTTTG
19582132 C-TAGACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTTTG
19582157 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
19582177 GTATGCCTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 24 0.56
26 19 0.44
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTTTG
Found at i:19583016 original size:26 final size:26
Alignment explanation
Indices: 19582987--19583039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19582977 CCGGTCCAAT
19582987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19583013 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19583039 C
1 C
19583040 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19584802 original size:26 final size:26
Alignment explanation
Indices: 19584773--19584825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19584763 CCGGTCCGAT
19584773 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19584799 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19584825 C
1 C
19584826 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19585521 original size:892 final size:891
Alignment explanation
Indices: 19582673--19601147 Score: 21253
Period size: 892 Copynumber: 20.8 Consensus size: 891
19582663 GGCATGCACA
* *
19582673 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATATCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
19582738 CTCTTTAATGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19582803 ACCAGCACCCATCGCACATCATGTGCACACAACCCCCCTCGGCCCCCCCGATCTCAGGAACCCCA
131 ACCAGCACCCATCGCACATCATGTGCGCAC--CCCCCC-CGG-CCCCCCGATCGCCGGAACCCCA
* * * * * * ** **
19582868 ATGTCGCCGGTCAGGTTGTCTGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTAGCA
192 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * *
19582933 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGG
257 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
*
19582998 AATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * *
19583063 ATGCAGGCACTCAGCCGGTCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACTGTGTCCCCCTCT
387 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
** * * * ** *
19583128 GCGTGCTATCGATCCTGCTGTCACAACCCTCAGTTTGGT-TCGATCTTACACTGGGAATGAACTC
452 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTC
* * * * *
19583192 TGTATGCCTAAGCCATCCGACGAAATGAGCGGGCGGGCGGTCGGGCGGGCGGGCACTACACCGGC
516 CGTATGCCTAAGCCAACCGACG--A-GA------------ACGAGCGGGCGGGCACTACGCCGGC
* *
19583257 CTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCAT
566 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
19583322 ATTTCTGCAAT-CCAATGCCATTTTTATGGCTTGTAAATTAATACAATAGTCCCTTAAGCCATCA
631 ATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
19583386 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACCAATTTTTAAAATTTTTTACGGT
695 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTTAAAACTTTTTACGGT
* * ** ** *
19583451 T-TGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGTGCCAAACTTGGTAGAAATGGTCCTTG
759 TCT-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
19583515 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCA
823 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
19583580 TTTG
888 TTTG
* * * *
19583584 AAAAAAGTGTCCCCGTTTTAGACACTTTAATGGCTATTGGCAGAAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19583649 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19583714 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCCTAATG
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCC-GATCGCCGGAACCCCAATG
* * * * *
19583779 CCGTCGAG-CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACC
195 CCGCCG-GTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * ** *
19583843 GGCACATGGCCGAGCCCAGCATGTGCTGTTGTAACCCTCGG-CCTGGTCCGATCTTAGACTGGGA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGA
* *
19583907 ATG-A------A--CTT----T--G--T--A-T--G--T--CTAAGCCAACCCACGAAACAAGCG
323 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** * *
19583946 TGCGGGTGTTCAGCCGGCCAGAGGGCCGGGATGCGCAAGCCGGGGATCGGCCAAGTCTCCCTCTA
388 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
* * * * * * ** ** *
19584011 CGTACTGTCGATCTTACTGCCACAACCCTCGGTTCACTCCAATCTTAGACTAGGAATGAACTCCG
453 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* ** * * * *
19584076 TGTGCCTAAGCCAGTCGACGAAAGGAGCGGGCAGGCGGGTGGGCAGGCACTACGTCGGTCAGAGA
518 TATGCCTAAGCCAACCGACG--A-GAAC--G-A-GC----GGGCGGGCACTACGCCGGCCAGAGA
*
19584141 GACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
572 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** *
19584206 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
637 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
19584271 TTTCATGGCAAGACGACTTGTTTTCTATTGTTCACGATTTTTGAAACTTTTTACAGTT-TGGGAT
702 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCT-GGAT
* * *
19584335 TTTTGAAAA-TTTTTCGAAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTG
766 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
19584399 TTGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGAATTTGTGACCATTTG
831 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
**
19584460 AAAAAAGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
1 AAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * **
19584524 GCTCTTTAAGGCGGTGTGACTTCTCGAGGTTTGATAAGGGATAGTTGGCCAATATAAGGGCCAAG
65 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
**
19584589 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCACGATCGTAGGAACCCCA
130 TACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCCGGCCCCC-CGATCGCCGGAACCCCA
* * * * ** *
19584654 GTGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCA
192 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * *
19584719 CCAGCACATGCCCGAGCCCAGCATGTTCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGG
257 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * ** *
19584784 AATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGT
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * ** * ** * ** *
19584849 GTACGGGCGATCAATCGGCCAGAGAGGCGGGATGCGCAAGCCAAGGATTGACCATGTTCCCCTCT
387 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * * **
19584914 GTGTGCTACCGATCCTACTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
452 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
** *
19584979 GTATGCCTAAGCCAACCGACGA-ATTGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGC
517 GTATGCCTAAGCCAACCGACGAGAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
19585043 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAAT
582 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
19585108 GCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
647 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
19585173 AGATGACTCGTTCTCTATTTTTCACGATTTTTGAATCTTTTTACGGTTCTTGATTTTTGAAAATT
712 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAA-T
* **** * *
19585238 TTTTTAGAAATCCTTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGC
776 TTTTTCGAAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
19585303 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
840 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
19585355 AAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
19585419 CTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
19585484 ACCAGCACCCATTGCACAT-ATTGTGGGCACGCCCCCCGGCCCCTCGATCACCTGAACCCCAATG
131 ACCAGCACCCATCGCACATCA-TGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
* * * * * *
19585548 CCACCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
195 CCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * *
19585613 GCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
260 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
19585678 GAA---C---T-C-----C---G--T--A-T--G--T-CC-AAGCCAACCCACGAAACGAGCGTG
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *** *
19585717 CGGGTGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTAAGTCCCCCTCTACG
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * * * ** * *
19585782 TGCTGTCGATCTTACTGCCGCAACCCTCGGTTCACTCTGATCTTAGACTAGGAATGAACTCCGTG
455 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
19585847 TGCCTAAGCCAATCGACGAAAGGAGCGGGCAGGCGGGCAGGCAGGCACTACGTCGGTCAGAGAGA
520 TGCCTAAGCCAACCGACG--A-GAAC--G-A-GCGGGC--G--GGCACTACGCCGGCCAGAGAGA
* * * *
19585912 CGAGATGCACATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
574 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
19585977 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
639 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * **
19586042 TCATGGCAAGACGACTCGTTTTATATTGTTCACGATTTTCAAAACATTTTACGGTTCAAGATTTT
704 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTT
* * *
19586107 TGAAAA-TTTTTCGGACGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
769 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
19586171 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTG
834 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19586229 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
19586294 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCTAATATAAGGGTAAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
19586358 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGGCCCCCCAATCGCCGAAACCCCA
131 ACCAGCACCCATCGCACATCATGTGCG--CA-CCCCC-CCCGGCCCCCCGATCGCCGGAACCCCA
* * * ** *
19586423 ATACCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCA
192 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * *
19586488 CCAGCACATGCCCAAGCCCAGGATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGG
257 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * * *
19586553 AATGAACTCTGAATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGC
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
19586618 ATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCT
387 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * * * *
19586683 GCGTGTTGCCAATCCTGCTGTCGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
452 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * *
19586748 ATATGCCTAAGCCAACTGACGAAACGAACGGGCGGGAAGGTGGGCACTACGTCGGCCAGAGAGAC
517 GTATGCCTAAGCCAACCGACG--A-GAACGAGC--G--GGCGGGCACTACGCCGGCCAGAGAGAC
* * * * * *
19586813 TGGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATATTCATATTTTTGCG
575 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
19586878 TGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
640 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
19586943 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTC-GAGATTTT
705 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTG-GATTTT
* * * *
19587007 TTGAAATCTTTTCGGAAGGAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTATATTTTTGTT
769 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
19587072 GGCATGCA-AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG
833 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19587130 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
19587195 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCTAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
19587260 ACCAGCACCCATCGCACATCCTGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAAT
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCC-CCCCGATCGCCGGAACCCCAAT
* *
19587325 GCCGCCGGTCAGGTTCT---ACGA-----T---GATGGTGCCCCGACGAAGAAAAATGTGGCACC
194 GCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * ** * *
19587379 AGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTAGTTCAATCTTAGACTGGGAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
19587444 TGAACTCCATTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** *
19587509 GCGGACGTTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTGC
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * * * * * *
19587574 GTGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTAAGATTGGGAATGAACTTCGT
454 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* ** * * *
19587639 GTGCCTAAGCCAGGCGACGA-AACGAGTGGGCGGGTGGGCACTATGCCGGCCAGAGGGACGGGAT
519 ATGCCTAAGCCAACCGACGAGAACGA----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
19587703 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
580 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
19587768 ATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
645 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
19587833 CTAGAGGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAA
710 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAA
* * *
19587898 TTTTTTCGAAAGGATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
775 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19587963 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTG
840 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
19588015 AAAAAAGTGTTCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19588080 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGTCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
19588144 ACCAGCACCCATCGCACAACATGTGCGTACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
*** * * *
19588209 CGCCGGTCAGGTTCTCTAACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAG
196 CGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
** *
19588274 CACATGCCTAAGCCCAGCATGTGCTGCCGTAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATG
261 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * *
19588338 AACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACACACAAAACGAGC--GC
326 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * ** * *
19588401 GGGCGCTTAGCCAGCCAGAGGGGTGGGATGCGTAAGTCAAGGATCGATCGGGTCCCCCTCTACGT
391 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
* * * * *
19588466 GCTGCCGATCCTGCTGCCACAACCCTCAGTCTGATCTGATCTTAGACTGGGAATAAACTCCGTAT
456 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
19588531 GCCTAAGCCAACCGACGA-AACGAGCGGGTGGGTGGTCGGGCGGGCACTACGTCGGCCACAGAGA
521 GCCTAAGCCAACCGACGAGAACGA-----------G-CGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
19588595 CGGGATGCGCAAGCCGTGGATCGGTAGGGTGGCAGGTGGGTTTGGGCACATCTTCATATTTCTGC
574 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
19588660 ATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
639 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** **
19588725 TCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTATAGTTCAAGATTTT
704 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTT
19588790 TTAAAATTTTTTC-ACAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
769 TTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * *
19588854 GGCATGCACAAAAAACTTCAGCCAAAAACTCAAAGTGTACAATATTTTGTGACTATTTG
833 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
19588913 AAAAAAGTGTCCCCATTTCAGAAACTTGAATGGCTACTCGCAGCAAACCTGCAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19588978 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
19589042 ACCAGAACCCATCGCACATCATGTGCGTACACCCCCTGGCCCCTCGATCGTCGGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * * *
19589107 CGCCGGTCAGGTTCTCCAGCGATGCTAC-GGCGATGGTGCCCCGATGAAGAAAAATACTGCACCA
196 CGCCGGTCAGGTTCTCCGGCGATGCT-CTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * *
19589171 GCACATGCCTAAGCCCAGCATGTGCTGCCACAACCCTCGGT-CGGTTCGATCTTAGACTGGGAAT
260 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
19589235 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCGTG
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
19589300 CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGTTCCCCCTCTGCG
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * ** * ** * **
19589365 TGCTACCGATCCTGCTACCATAACACTCTATCCGCTCCAATCTTAGACTGGGAATGAACTCCGTA
455 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
19589430 TGCCTAAGCCAACCGA-TAAAACGAGCGGATGGGCAGGCACTACGTCGGCCAGAGAGACGGGATG
520 TGCCTAAGCCAACCGACGAGAACGAGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* ** * *
19589494 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGTGCAGCTTCATATTTCTACATGCCAA
581 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
19589559 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
646 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
19589624 AAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTT-TGGGATTTTTTAAAA
711 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCT-GGATTTTTTAAAA
* * *
19589688 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
775 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19589753 ACAAAAAACTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
840 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
19589805 AAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19589870 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19589935 ACCAGCACCCATCGCACATCATATGCGCACACCCCCACCTGGCACCCCCGATCACCGGAACCCTA
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCC-CC-GGC-CCCCCGATCGCCGGAACCCCA
* * * * **
19590000 ATGCCGTCGGTCAGGTTCTCCGGTGATGCGCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCA
192 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * ** * *
19590065 CCAGCACATGCCCGAGCCCAGCAAGTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAAACTGAG
257 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
** * * *
19590130 AATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGC
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * **
19590195 ATGCGGGCACTCTGCCAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
387 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * * * * * * **
19590260 GCATGCTACTGATCCTACTACCGTAACCCTAGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
452 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
19590325 GTATGCCTAAGCCAACCGATGA-AACGAGCGGGCGGGCTGACGGGCGAGCACTACGCCGACCAGA
517 GTATGCCTAAGCCAACCGACGAGAACGA----GC-GG--G-C--G-G-GCACTACGCCGGCCAGA
* *
19590389 GAGACGGGAGGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT
570 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
19590453 CTGCATGCCAATGCAATTTTAATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTAA
635 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
19590518 AGTTACATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA
700 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGA
* * *
19590583 TTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
765 TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
19590648 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
830 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19590710 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19590775 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
19590840 ACC-GACACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCTCCGATCACCGAAACCCTAA
131 ACCAG-CACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCC-CCGATCGCCGGAACCCCAA
* * * * *
19590904 TGTCGTCGATCAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAATACGGCA
193 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCA
* * * * *
19590968 GCAGCAAATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGG
257 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * * *
19591033 AATGAACTCCGTATGCTGAGACTGGGAATGAACTTCGTCTGCCTAAGTCAACCCATGAAACGAGC
322 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
19591098 GTGCGGGTGCTCAGCAGGACAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCGTGTCCCCCTCT
387 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* ** * * * **
19591163 GCATGCTATCGATCCTGCTGTCACAACCCTCAGTTTGGT-TCGATCTTAGACTGGGAATGAACTC
452 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTC
* * * *
19591227 TGTATGCCTAAGCCATCCGACGA-AATGAGCGGGCGGACGGGTGGATGGGCACTACGCCGGCCTG
516 CGTATGCCTAAGCCAACCGACGAGAACGAGC--G-GG-C--------GGGCACTACGCCGGCCAG
* * *
19591291 AGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATATTCATATT
569 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
19591356 TCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTAATACAATAGTCCCTTAAGCCATCACGTG
634 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
19591421 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTT-TGG
699 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCT-G
* * *
19591485 GATTTTTTAAAATTTTTTC-AGAAGGTGTTTTTGGCCCCAAACATGGTAG-CGTGATCCCTGTAT
763 GATTTTTTAAAATTTTTTCGA-AAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
19591548 TTTTG-TGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGTACAAGATTTTGTGAGCATT
826 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT-GTACAAGATTTTGTGACCATT
19591612 TG
890 TG
* *
19591614 -AAAAAGTGTCCCCATTTCAAACAC-TTAAAGGCTACTTGGCAGCAAACCTGTAAAATCTCAAAT
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAAT
*
19591677 GGCTCTTT-A-GGGGT-TGAGTTCTTGAGGTTTTGATGAGGGAATAGGGGGCCAATATAAGGGCC
65 -GCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGG-ATAGGGGGCCAATATAAGGGCC
* ** *
19591739 AAAGTACGCAGCACCCATCGCACATCATGTGTCGCA-CACCGTCGGCCCCCCGATCGTCGGATAT
127 -AAGTAC-CAGCACCCATCGCACATCATGTG-CGCACCCCCCCCGGCCCCCCGATCGCCGGA-A-
* * ** *
19591803 ACCCAATGTTCG-CGGTACAGGTT-TCTC--CGA---AAT-GC--TGGTGCCCTGACGAAGAAAA
187 CCCCAATG-CCGCCGGT-CAGGTTCTC-CGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAA
* * * *
19591858 TAT--AGAACCTGCGACACATGCCCGAG-CCAGCATGTGCTG-CGCAAACC-C---CC--T----
249 -ATGCGGCACC--AG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
** ** * *
19591909 TC--AG--T--CCA-G---TCCCCAT-CTTTAAACAGGGAATGAACTCCGTATGCCTAAGTCAAC
310 TCTTAGACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
19591963 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGACGCGCAAGCCAGGGATCGAT
374 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
** * * * * *
19592028 CGGGTCCCCCTCTATGTGCTGCTGATCCAGCTGCCACAACCCACAGT-CGGATC-GTATCTTAGA
439 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG-TCTG-ATCTTAGA
* * * *
19592091 CTGGGAATGAACTCCGTATGGCTAAGACAACCGACAAAACGAGCGGGCAGGCGGGCGGGCGGGAC
502 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-GAAC--G-A-GCGGGCGGGC---AC
19592156 TACGCCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGAG-TTAGGC
557 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGGC
*
19592219 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
621 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
19592284 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
686 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * * *
19592349 TTTTCGGTT-TGGGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
751 TTTACGGTTCT-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
19592413 CATCCTTTTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
815 GATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
19592478 TTGTGACCATTTG
879 TTGTGACCATTTG
* * *
19592491 AAAAAAGTGTCCCCATTTCAGACGCTTTATTGGCTACTGGCAGCAAACCTGTAAAATCCCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19592556 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
19592621 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAACCCCAATG
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
* * * *
19592686 TCGCCTGTCAGGTTCTCCGGCAATGCTCTGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCA
195 CCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * * *
19592751 GCACATGCCCGAACCTAGCATGTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAA
260 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
19592816 GAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTG
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* ** *
19592881 CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGTGGG-TC-AGTGGGGTCCCCCTCTA
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGA-CCGGGTCCCCCTCTG
* * * * * * * * *
19592944 TGTGCTGCCAATCCTGTTACCCCAACCCTCGGTCCAGTATGATCTTAGACTAGGAATGAACTTCG
453 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
19593009 TATGCCTAAGCCAACTGACGA-AACGATCGGGCGGGCGGGCAGGCACTATGCCAGCTAGAGAGAC
518 TATGCCTAAGCCAACCGACGAGAACGA----GCGGGC--G--GGCACTACGCCGGCCAGAGAGAC
** *
19593073 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTCCATATTTCTGCA
575 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
19593138 TGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
640 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
19593203 CATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTCAAAAGTTTTTACGGTTC-GAGATTTT
705 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTG-GATTTT
* * * *
19593267 TTAAAATTTTTTAG-AAGGACTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGAATTTTTGTTG
769 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
19593331 GCATGCA-TAAAAAATTCAGCTAAAAGCTTGAAGTGTACAAGATTTTGTGACCATTTG
834 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
19593388 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*** * * ***** * * * * * * *
19593453 CTCTTTAA--GGG-CCAACTAC-C-AGAACCCATCA--CACA-----TC-ATGT--GCGCC-A-C
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* ** * * * *** * *
19593501 ACC--CCCCCGGC-CCCGATC--GT-CGGA--ACCCAATG-CCCCTG-T--CAGG--------T-
131 ACCAGCACCCATCGCAC-ATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
* * * * * * * * *** ** * * *
19593545 TC-TCGG-C-GATGCTCTGGCGATGGCCCCGAGAAGAAAAAT-CGGC-AC-CAG-CACATGCCCG
195 CCGCCGGTCAGGTTCTCCGGCGAT-GCTCTG-G-CG-ATGGTGCCCCGACGAAGAAAAATG--CG
** * * * * * * * * **
19593603 AGC-CCAGCATGTGCTGTCGCAACCC-TC-GGT-CTG--GTCCACTCTTAGATTGGGAATGAACT
254 -GCACCAGCACATGC--CCG-AGCCCAGCATGTGCTGCCG-CAAC-CCTCGGTCCGG--T---C-
* * ***** ** *
19593662 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACAAGCGTACGGGC
307 C-G-AT-CTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAAT-GAAC-TCCGTA--TGC
* * ** * * *
19593727 ACTCAGGC-GGCCA-G--A-G-G-G-G-TGG-GAT--G-C-G-CA-A---GCCGG--G-G-AA--
364 -CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * * *
19593767 C---GAT----CGGGTTCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAGCCCTCGATCCAGTCC
428 CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT
* * *
19593825 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGTGGGCGGGC
493 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-GAACGAGCGGGCGGGC
* * * * *
19593890 ACTACGCCGGCTAGAGAGA-TGGATGTGCAAGCCGTGGATCGATGGGGTGGTAGGTTGGTTTAGG
555 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
19593954 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
620 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
19594019 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
685 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
*
19594084 TTTTACGGTTC-GAGA-CTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGAC
750 TTTTACGGTTCTG-GATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19594146 CTGATCCTTATA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
813 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
19594210 TTTGTGACCTTTTG
878 TTTGTGACCATTTG
** * * * *
19594224 AAAAAAGTAACCCTATTTTAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19594289 CTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
19594353 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * ** * *
19594418 CACCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
196 CGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * *
19594483 CACATGCCCAAGCCCAACATGGGCTGCCGCAACCCTCGAT-CGGATCCGATCTTAGACTGGGAAT
261 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG-TCCGATCTTAGACTGGGAAT
* * * *
19594547 GAACTCCATATGCTTAGACTGGTAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTG
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
19594612 CGGGCACTCAGCCGACTAGAGGGGCTGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTATGCG
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * *
19594677 TGCTACCGATCCTGCTGCCGCAA-CCTCCGGTCCGGTAC-AATCTCAGACTGGGAATGAACTCCG
455 TGCTGCCGATCCTGCTGCCGCAACCCT-CGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCG
* **
19594740 TATGCCCAAGCCAACCGACGA-AACGAGCGGATGGGCGGGCACTACGCCGGTTAGAGAGACGGGA
518 TATGCCTAAGCCAACCGACGAGAACGAGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
19594804 TACGCAAGCTGTGGATCGATAAGGTGGTAGGTGAGTTTAGGAACATCTTCATATTTCTGCATGCC
579 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
19594869 AATGCCATTTTTATGGCGTGTAAATCCATAC-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
644 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** * *
19594933 GCAAGACGACTCATTTTCTATTTGTCACGATTTTTGAAACTTTTTATTGTTCAGGATTTTTTTAA
709 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAA
* * * * *
19594998 ATTTCTTCGGAAGGATTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTCTTGTTGGCATG
774 ATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
19595063 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
839 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19595116 AAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGTCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19595181 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
19595246 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCGATTGTCGGAACCCCGAT
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCC-CGATCGCCGGAACCCCAAT
* * * * * * *
19595311 GCCGCCGGTCAGGTTCTCCGACGATGCCCCGACGATGGTACCCTGACGAAGAAAAATACGGCACC
194 GCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * *
19595376 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCCCGATCCGATCTGATCTTAGACTGGGAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* *
19595441 AGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* ** * * * * ** *
19595506 GCGGGTGCTCAATCGGGCAGAGGGGTGGGATGCTCAAGTCGGGGATCGGTCGGGTCCCCCTCTAC
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * *
19595571 GTGCTGCC-ACTCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
454 GTGCTGCCGA-TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * * *
19595635 TATGCCTAAGCCAACCGATGAAATGATCGGGCGGGCGGGCACAACACCGGCTAGAGAGAC-GGAT
518 TATGCCTAAGCCAACCGACG--A-GAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * * ***
19595699 GCGCAAGCCGTGGAACGATAGGGTGGTAGTTGGGCTTAGACACATTTTCATATTTCTATGTGCCA
580 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * *
19595764 ATGCCATTTTTTTGGCTTGTAAATTCATAAAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGG
645 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
19595829 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGTTTCAGGATTTTTTAAAA
710 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAA
* * *
19595894 TTTTTTTTG-AAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATG
775 -TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
19595958 CGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
839 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19596011 -AAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
19596075 CTTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * **
19596140 -CAAGGA-CCATCACACATCATGTGCGCA-CCCCCCCGGTCTCCCGATCATCGGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* *
19596202 CGCCGGTCAGGTTCTCCGAG-G-TGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGC-GCACC
196 CGCCGGTCAGGTTCTCCG-GCGATGCTCTGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC
** * * * *
19596263 AGCACATGCCCGAGCCCAGCATGTATTGTCGCAACCCTCGGTCCGGTCCGATCTTCGGCTAGGAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
** * *
19596328 TGAACTATGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
19596393 ACGGGCGCTCAGTCGGGCAGAAGGGCGGGATGCGCAAGCCGAGGATC-AGCCGGGTCCCTCTCTG
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTG
* * * * * ** * *
19596457 CATGCTGCCGATCTTACTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCA
453 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
** * * * * *
19596522 TATGCCTAAGCCAACCAATGAAACGAGCGCGGGCGGGCGGGCACTACGTCGACCAAAGAGATGGG
518 TATGCCTAAGCCAACC---G--ACGAGAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * **
19596587 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGGGTGC
578 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
19596652 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCTT
643 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
19596717 GGCAAGACAACTCATTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGGTT-TCGGATTTTTTA
708 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCT-GGATTTTTTA
* * *
19596781 AAATCTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTA-ACCGTGATCCTTGTATTTTTGTTGGC
772 AAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGC
* *
19596845 ATGCACAAAACAATTCAGCTAAAAACTCGAAATGTA-AAGATTTTGTGACCATTTG
836 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
19596900 AAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGACAGCAAACTTGCAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19596965 CTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
19597030 A-CAGCACCCATCGCACATCATGTGCGTACACCCCCCGGGCCCCCGATCGTCGGAACCCCAACGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * * * ** * *
19597094 TGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAG
196 CGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* *** * *
19597159 CACATGCCCAAGCCCAGCATGTGCTGCCATGACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
261 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * * *
19597224 AACTCTGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAATGTCAACCAACGAAATGAGCGTG
326 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCACGAAACGAGCGTG
* * * * ** *
19597289 TGGGTGCTCAGCCGGCCAGA-GGGC-GAATGCGCAAGTCGGGGATCGATTGGGTCCCCCACTGCG
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * * * * ** *
19597352 TGCTGTCGATCCTGTTGTCGTAACCCTCGGTTCGGTCCAATCATAGACTGGGAATGAACTCCGTA
455 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
19597417 TGCATAAGCCAACCGATGA-AACGAGCGGGCGGACGGGAGGCACTACGCCGGGCAGAGAGACGGG
520 TGCCTAAGCCAACCGACGAGAACGAGC--G-GG-C--G-GGCACTACGCCGGCCAGAGAGACGGG
* * * *
19597481 ATGCGCAAGCCCTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGC
578 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
19597546 CAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
643 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
19597611 GGCAAGACGATTCGATTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAA
708 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAA
* * * *
19597676 AATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTAT
773 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
19597740 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTG
838 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19597794 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * **
19597859 CACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCAGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
19597924 ACCAGCACCCATCACACATCATGTGCGCACATCCCTCCGGCCCCTCCGATCGTCGGAACCCCAAT
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCC-CCGATCGCCGGAACCCCAAT
** * * * * *
19597989 GCCATCGGTTAGGTTCTCCGACGATTCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACC
194 GCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * ** *
19598054 AGCACATGCCCGAGCCCAGTATGTGCTGCCGTAACCCTTGGTCTTGTCCGATCTTAGACTGGAAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * *
19598119 TGAACTCTGTACGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGTGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** * * * * * ** ** *
19598184 GTAGGCACTCAGTCTGCCAGAGGGGCGGGATTCACAAGCCAAGGATCGGTCGGGTCCACCTCTGC
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* ** * * ** * * * *
19598249 TTGCTGCCGATCCTATTGCCGTAACCCTCAGTTTGATCCGATCTTAGACTGGAAATGAACTTCGT
454 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* *
19598314 ATGCCTAAGCCAACCGATGA-AACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAT
519 ATGCCTAAGCCAACCGACGAGAACGA----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * **
19598378 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCCCATCTTCATATTTCTGTGTGCCA
580 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
19598443 ATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
645 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
19598508 CAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAA
710 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAA
* * * *
19598573 TTTTTTTTG-AAGGAGTTTTGGCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCTTGGCATG
775 -TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
19598637 CACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTG
839 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19598690 AAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19598755 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *** *
19598820 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCATTGGAACCCCAAAGC
131 ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * ** ** *
19598885 CGTCGGTCAGGTTCTCCGACGATGCT-TCGATGATGGTGCCCCGGTGAAGAAAAATGCAGCACCA
196 CGCCGGTCAGGTTCTCCGGCGATGCTCT-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * ** *
19598949 GCACATGCTTGAGCCCAACATGTGCTGTTGCAACCCTCGGTCCGGTCCGATCTTATACTGGGAAT
260 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
19599014 GAACTCCGTATGC-----C------T-AA----G--TG---AAG-----CCACGAAACGAGCGTA
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
19599053 CGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTACCCCTCTGCA
390 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * * **
19599118 TGCTGCCGATCCTGCTGCTGGAACCCTCGGTCTGGTCAAATCTTAGACTGGGAATGAACTCCGTA
455 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
19599183 TGCCTAAGCCAATTAACGAAACGAGCGGGCAGGCGGGCGGGCGAGCACTACGCCGACCTGAGAGA
520 TGCCTAAGCC----AAC----CGA-CGAG-A-ACGAGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * * * * **
19599248 CGAGATGTGCAAGCCGTGGATAGATAGGGTAGTAGTTGGGTTTAGGCACATCTTCGTATTTCTAT
574 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
19599313 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
639 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* ** * * * *
19599378 TCATGGCAAGACGACTCCTTTTCTATTTTTCTTGATTTTTAAAAATTTTTGCGGTTCGGGATGTT
704 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTT
* * *
19599443 TTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTG
769 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
19599508 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG
834 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
19599566 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
19599631 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19599695 ACCAGCACCCATCACACACCATGTGCGCACACCCTCCCGGCCCCCCCGATCGCCGGAACCCCAAT
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGG-CCCCCCGATCGCCGGAACCCCAAT
* * * * * * *
19599760 ACCGTCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACC
194 GCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * *
19599825 AGCACATGCCTGAGCCCAGCATCTGCTGCCACAACCCTCGGTCCAGTCTGGTCTTAGACTGGGAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * *
19599890 TGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCTACCCATGAAACGAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
19599954 TCGGGCGCTCAGCTGGCCAGAGGTGTGGGATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGC
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * * * * * * * * *
19600019 GTGATACCAATCCTACTGCTGTAACCCTCAGTTCGGTCTGATCTTAGACTTGGAATGAACTCTGT
454 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
19600084 ATGCCTAAGCAAACCGACGA-AACGAGCGGGGCGGGCACTACGACGGCACA-AAAGCCGGGACGT
519 ATGCCTAAGCCAACCGACGAGAACGAGC-GGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGC
**
19600147 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
582 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * *
19600212 GCCACTTTTGTGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
647 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** **
19600277 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATT
712 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAATT
* * * * * *
19600342 TTTTTGGAAGGATTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAT
777 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
19600407 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
842 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19600457 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* ** * * *
19600522 CTCTTTAAGGGGGTATGAGTTCTCGAGGTTCAATGAGGGATAGGCGGCTAATATATGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * * * *
19600587 ACCAGCACCCATCGCACACCATGTACGCACACCCCTCCCGGCCCCTCAATCGTCGAAACCTCAAG
131 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCC-CCCGGCCCCCCGATCGCCGGAACCCCAAT
* * * * *
19600652 GCCGTCGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
194 GCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * *
19600717 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCGTTGATCCAGTCCGATCTTAGACTGGGAA
259 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
19600782 AGAACTCCGTAT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
19600846 GCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCCGAGGATCGATCGGGTCCCCCTCTGT
389 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
*** * * ** * *
19600911 GTGCTGTTAATCCTGTTGTCGCAACCCTCAATTCGTGTCCGATCTTAGACTGGGAATGAACTCCG
454 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG-GTCTGATCTTAGACTGGGAATGAACTCCG
* * *
19600976 TATGCCTAAGCCAATCGACGA-AACGAGCGGGCGGGTGGGCAGGCGGGCACTACGTCGGCTAGAG
518 TATGCCTAAGCCAACCGACGAGAACGA----GC------G--GGCGGGCACTACGCCGGCCAGAG
* * * * * *
19601040 AGACGGGATGTGCAAGCCGTCGATCAATAGGTTGGTAGGTGGGTTTAGGAACATCTGCATATTTC
571 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
19601105 TACGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATG
636 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
19601148 ATCCTTGTAT
Statistics
Matches: 15156, Mismatches: 1889, Indels: 1045
0.84 0.10 0.06
Matches are distributed among these distances:
835 29 0.00
836 325 0.02
837 25 0.00
838 3 0.00
839 2 0.00
840 5 0.00
841 87 0.01
842 2 0.00
843 1 0.00
844 1 0.00
845 5 0.00
847 1 0.00
848 4 0.00
850 6 0.00
851 2 0.00
852 4 0.00
854 12 0.00
855 2 0.00
856 16 0.00
857 14 0.00
858 31 0.00
859 18 0.00
860 14 0.00
861 9 0.00
862 5 0.00
863 13 0.00
864 29 0.00
865 144 0.01
866 7 0.00
867 31 0.00
868 139 0.01
869 6 0.00
870 11 0.00
871 16 0.00
872 23 0.00
873 39 0.00
874 179 0.01
875 212 0.01
876 912 0.06
877 464 0.03
878 742 0.05
879 33 0.00
880 32 0.00
881 19 0.00
882 217 0.01
883 19 0.00
884 125 0.01
885 355 0.02
886 16 0.00
887 249 0.02
888 42 0.00
889 366 0.02
890 719 0.05
891 715 0.05
892 1207 0.08
893 463 0.03
894 1005 0.07
895 962 0.06
896 282 0.02
897 422 0.03
898 1055 0.07
899 92 0.01
900 596 0.04
901 190 0.01
902 429 0.03
903 513 0.03
904 611 0.04
905 452 0.03
906 86 0.01
907 9 0.00
908 128 0.01
909 6 0.00
911 151 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAGAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTT
CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
Found at i:19586578 original size:26 final size:26
Alignment explanation
Indices: 19586542--19586594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19586532 CCGGTCCAAT
19586542 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCTGAATG
*
19586568 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
19586594 C
1 C
19586595 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:19588352 original size:26 final size:26
Alignment explanation
Indices: 19588323--19588375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19588313 TCGGTCCGAT
19588323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19588349 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19588375 C
1 C
19588376 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19588754 original size:898 final size:900
Alignment explanation
Indices: 19585664--19593463 Score: 10219
Period size: 898 Copynumber: 8.7 Consensus size: 900
19585654 CTGGTCCGAT
* * *
19585664 CTTAGACTGGGAATGAACTCCGTATGTCC-AAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAG
* *** * *
19585728 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTAAGTCCCCCTCTACGTGCTGTCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * ** * *
19585793 TTACTGCCGCAACCCTCGGT-TCACTCTGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCC
129 CTGCTGCCACAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
19585857 AATCGACGAAAGGAGCGGGCAGGCGGG-CAGGCAGGCACTACGTCGGTCAGAGAGACGAGATGCA
193 AACCGACGAAACGAGCGGGC-GG-GGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* **
19585921 CATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
19585986 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * ** *
19586051 GACGACTCGTTTTATATTGTTCACGATTTTCAAAACATTTTACGGTTCAAGATTTTTGAAAA-TT
386 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
*
19586115 TTTCGGACGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
19586180 AAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
19586245 TTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* **
19586310 GAGTTCTCGAGGTTTGATGAGGGATA-GGGGCTAATATAAGGGTAAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19586374 CATCATGTGCGCACACCCCCCTCCCGGCCCCCCAATCGCCGAAACCCCAATACCGCCGGTCAGGT
711 CATCATGTGCGCACA--CCCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** *
19586439 TCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAG
773 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * * *
19586504 CCCAGGATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGAATG
838 CCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19586568 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
* * * * *
19586633 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCTGCGTGTTGCCAATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
19586698 TGCTGTCGTAACCCT-TGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 TGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * *
19586762 ACTGACGAAACGAACGGGC--GGG-AAGGTGGGCACTACGTCGGCCAGAGAGACTGGATACGCAA
194 ACCGACGAAACGAGCGGGCGGGGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
19586824 GCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATATTCATATTTTTGCGTGCCAATTCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
19586889 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
19586954 GACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTGAAATCTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
*
19587019 CGGAAGGAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCA-AAA
454 CGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
19587083 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19587148 TAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19587213 GTTCTTGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCTAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
19587278 TCCTGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
713 TCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** *
19587342 --ACGA---T-----GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCA
777 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * * *
19587397 GCATGTGCTGCTGCAACCCTCGGTCTAGTTCAATCTTAGACTGGGAATGAACTCCATTTG
842 GCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19587457 CTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
* * ** * *
19587522 CGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * * * *
19587587 TGCTACCGCAACCCTTGGTCTGGTCTGATCTAAGATTGGGAATGAACTTCGTGTGCCTAAGCCAG
130 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19587652 GCGACGAAACGAGTGGGC--GGGT-----GGGCACTATGCCGGCCAGAGGGACGGGATGCGCAAG
195 CCGACGAAACGAGCGGGCGGGGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
19587710 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
19587775 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAGG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
19587840 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
19587905 GAAAGGATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
19587970 AATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTGAAAAAAGTGTTCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19588035 GACACTTGAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
19588099 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACAAC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ***
19588164 ATGTGCGTACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAA
715 ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* **
19588228 CGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGCA
780 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
*
19588293 TGTGCTGCCGTAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
845 TGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19588349 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACACACAAAACGAGC-GCGGGCGCTTAGCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTGCGGGCGCTCAGCC
* * * * ** * *
19588413 AGCCAGAGGGGTGGGATGCGTAAGTCAAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
19588478 GCTGCCACAACCCTCAGTCTGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
19588543 CGACGAAACGAGCGGGTGGGTGGTCGGGCGGGCACTACGTCGGCCACAGAGACGGGATGCGCAAG
196 CGACGAAACGAGCGGGCGGG-GGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
19588608 CCGTGGATCGGTAGGGTGGCAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGGCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
19588673 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** **
19588738 ACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTATAGTTCAAGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
**
19588803 ACAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
19588868 ACTTCAGCCAAAAACTCAAAGTGTACAATATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
19588933 GAAACTTGAATGGCTACTCGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19588997 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGAACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
19589062 ATGTGCGTACA-CCCCCTGGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG
715 ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * **
19589126 CGATGCTACGGCGATGGTGCCCCGATGAAGAAAAATACTGCACCAGCACATGCCTAAGCCCAGCA
780 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* *
19589191 TGTGCTGCCACAACCCTCGGTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
845 TGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19589247 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
* * * * *
19589312 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGTTCCCCCTCTGCGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
19589377 TGCTACCATAACACTCTA-TCCGCTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19589441 ACCGA-TAAA--A-CGAGC--GGAT-GGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGGGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** * *
19589499 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGTGCAGCTTCATATTTCTACATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
19589564 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
19589629 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
19589694 CGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
19589759 AACTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
19589824 AGACGCTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
19589889 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
19589954 CATATGCGCACACCCCCACCTGGCACCCCCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCT
714 CATGTGCGCACACCCCC-CC-GGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
19590019 CCGGTGATGCGCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * ** * *
19590084 AGCAAGTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAAACTGAGAATGAACTCCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
19590145 CTTAGACAAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
* * ** * * *
19590210 CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACTGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** **
19590275 TACTACCGTAACCCT-AGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAACCCTCA-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
19590339 ACCGATGAAACGAGCGGGCGGGCTGACGGGCGAGCACTACGCCGACCAGAGAGACGGGAGGTGCA
194 ACCGACGAAACGAGCGGGCGGG-GGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
19590404 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCA
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
19590468 ATTTTAATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTAAAGTTACATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
19590533 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
19590598 TTGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
19590663 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
19590728 CAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19590793 GTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACC-GACACCCATCGCAC
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCAC
* ** * * * * *
19590857 ATCATGTGCGCACACCCCCCCGACCCCTCCGATCACCGAAACCCTAATGTCGTCGATCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
19590922 CCAGCGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAATACGGCAGCAGCAAATGCTCGAGCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* *
19590986 CAGCATGTGCTGCCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19591048 CTGAGACTGGGAATGAACTTCGTCTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
* * * * * * * **
19591113 AGGACAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCGTGTCCCCCTCTGCATGCTATCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
19591178 TGCTGTCACAACCCTCAGTTTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 TGCTGCCACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
19591242 TCCGACGAAATGAGCGGGCGGACGGGT-GGATGGGCACTACGCCGGCCTGAGAGACGGGATGTGC
194 ACCGACGAAACGAGCGGGCGG--GGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
19591306 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATATTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
19591371 CATTTTTACGGCTTGTAAATTAATACAATAGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
19591436 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
19591501 TTCAGAAGGTGTTTTTGGCCCCAAACATGGTAG-CGTGATCCCTGTATTTTTG-TGCCATGCACA
452 TTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
19591564 AAAAAATTCAGCTAAAAACTCGAAGTGGTACAAGATTTTGTGAGCATTTG-AAAAAGTGTCCCCA
516 AAAAAATTCAGCTAAAAACTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
19591628 TTTCAAACAC-TTAAAGGCTACTTGGCAGCAAACCTGTAAAATCTCAAATGGCTCTTT-A-GGGG
580 TTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAAT-GCTCTTTAAGGGGG
*
19591690 T-TGAGTTCTTGAGGTTTTGATGAGGGAATAGGGGGCCAATATAAGGGCCAAAGTACGCAGCACC
643 TGTGAGTTCTCGAGG-TTTGATGAGGG-ATAGGGGGCCAATATAAGGGCC-AAGTAC-CAGCACC
** * *
19591754 CATCGCACATCATGTGTCGCACA--CCGTCGGCCCCCCGATCGTCGGATATACCCAATGTTCG-C
704 CATCGCACATCATGTG-CGCACACCCCCCCGGCCCCCCGATCGTCGGA-A-CCCCAATG-CCGCC
** * * *
19591816 GGTACAGGTT-TCTC--CGA-AAT---GC--TGGTGCCCTGACGAAGAAAATATA--GAACCTGC
765 GGT-CAGGTTCTC-CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA-ATACGGCACC--A
**
19591870 GACACATGCCCGAG-CCAGCATGTGCTG-CGCAAACCC-C---C--T----TC--AG--T--CCA
825 G-CACATGCCCGAGCCCAGCATGTGCTGCCGC-AACCCTCGGTCGGTCCGATCTTAGACTGGGAA
**
19591917 -G---TCCCCAT-
888 TGAACTCCGTATG
* * *
19591925 CTTTAAACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 C-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAG
* * * * ** *
19591990 CCGGCCAGAGGGGCAGGACGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
19592055 CAGCTGCCACAACCCACAGTC-GGATC-GTATCTTAGACTGGGAATGAACTCCGTATGGCTAAGA
129 CTGCTGCCACAACCCTCAGTCTGG-TCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
19592118 CAACCGACAAAACGAGCGGGCAGGCGGG-CGGGCGGG-ACTACGCCGG-CAGAGAGACGGGATGC
192 CAACCGACGAAACGAGCGGGC-GG-GGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
19592180 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGAG-TTAGGCACATCTTCATATTTCTGCGTGCCAA
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGCATGCCAA
19592244 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
319 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
19592309 AAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTTCGGTTTGGGGTTTTTTAAAAT
384 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
19592374 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTTTATTTTTTTTTGGCATGC
449 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC
19592439 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
513 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
19592504 CATTTCAGACGCTTTATTGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGG
578 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
19592569 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATC
643 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
19592634 GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAACCCCAATGTCGCCTGTCAGGT
708 GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
19592699 TCTCCGGCAATGCTCTGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAA
773 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * * *
19592764 CCTAGCATGTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAAGAACTCCGTATG
838 CCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19592828 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGCGGGCGCTCAGC
** ** *
19592893 CGGCCAGAGGGGCGGGATGCGCAAGCCGTGGG-TC-AGTGGGGTCCCCCTCTATGTGCTGCCAAT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * ** * * *
19592956 CCTGTTACCCCAACCCTCGGTCCAGTATGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCC
128 CCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
19593021 AACTGACGAAACGATCGGGC--GGG-CGGGCAGGCACTATGCCAGCTAGAGAGACGGGATGCGCA
193 AACCGACGAAACGAGCGGGCGGGGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** *
19593083 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTCCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19593148 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
19593213 CGACTCGTTTTATATTTTTCACGATTTTCAAAAGTTTTTACGGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
19593278 T-AGAAGGACTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCA-TAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
19593341 AAAATTCAGCTAAAAGCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
19593406 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
19593464 CCAACTACCA
Statistics
Matches: 6108, Mismatches: 649, Indels: 285
0.87 0.09 0.04
Matches are distributed among these distances:
874 10 0.00
875 38 0.01
876 241 0.04
877 74 0.01
878 295 0.05
879 27 0.00
880 25 0.00
881 21 0.00
882 61 0.01
883 14 0.00
884 118 0.02
885 344 0.06
886 3 0.00
888 5 0.00
889 277 0.05
890 135 0.02
892 465 0.08
893 156 0.03
894 9 0.00
895 1 0.00
896 8 0.00
897 241 0.04
898 932 0.15
899 83 0.01
900 586 0.10
901 188 0.03
902 298 0.05
903 523 0.09
904 387 0.06
905 451 0.07
906 92 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGGGTCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19588774 original size:26 final size:26
Alignment explanation
Indices: 19588744--19588800 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19588734 GACGACTCGT
** * *
19588744 TTTTTATTTTTCACGATTTTTGAAAC
1 TTTTTATAGTTCAAGATTTTTGAAAA
*
19588770 TTTTTATAGTTCAAGATTTTTTAAAA
1 TTTTTATAGTTCAAGATTTTTGAAAA
19588796 TTTTT
1 TTTTT
19588801 TCACAAGGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (26 bp):
TTTTTATAGTTCAAGATTTTTGAAAA
Found at i:19589257 original size:26 final size:26
Alignment explanation
Indices: 19589221--19589273 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19589211 TCGGTTCGAT
19589221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19589247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19589273 C
1 C
19589274 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19592831 original size:26 final size:26
Alignment explanation
Indices: 19592802--19592854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19592792 CCGGTCCAAT
19592802 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
**
19592828 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19592854 C
1 C
19592855 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19593672 original size:26 final size:26
Alignment explanation
Indices: 19593643--19593695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19593633 CTGGTCCACT
* *
19593643 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19593669 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19593695 C
1 C
19593696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19595457 original size:26 final size:26
Alignment explanation
Indices: 19595428--19595480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19595418 CCGATCTGAT
19595428 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
19595454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19595480 C
1 C
19595481 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19596818 original size:890 final size:892
Alignment explanation
Indices: 19593458--19601147 Score: 10068
Period size: 895 Copynumber: 8.6 Consensus size: 892
19593448 AAATGCTCTT
* * *
19593458 TAAGGGCCAACTACCAGAACCCATCACACATCATGTGCGCCACACCCCCCCGG--CCCCGATCGT
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CACA-CCCCCCGGCCCCCCGATCGT
* * * * *
19593521 CGGAA-CCCAATGCC-CCTGTCAGGTTCTCGGCGATGCTCTGGCGAT-G-GCCCCGA-GAAGAAA
64 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* *
19593581 AAT-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCC-ACTC
129 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA-TC
*
19593644 TTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
193 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
19593709 TGGAACAAGCGTACGGGCACTCAGGCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAACGATCGG
258 CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGG
* ** * * * **
19593774 GTTCCCCTCTGCGTGCTGCCGATCCTGCTATCGTAGCCCTCGATCCAGTCCGATCTTAGACTGGG
322 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * * *
19593839 AATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGTGGGCGGGCACTACGCCGGCTAG
387 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
* * * *
19593904 AGAGA-TGGATGTGCAAGCCGTGGATCGATGGGGTGGTAGGTTGGTTTAGGCACATCTTCATATT
452 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
19593968 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
517 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
*
19594033 AAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GA
582 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG-
* * * * *
19594097 GA-CTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTATA-TT
646 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
19594160 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGA
711 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** * * * *
19594225 AAAAAGTAACCCTATTTTAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAAATGC
776 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
19594290 TCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
841 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
19594341 TAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCA
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* *
19594406 GAACCCCAATGCCACCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * *
19594471 ATGCGGCACCAGCACATGCCCAAGCCCAACATGGGCTGCCGCAACCCTCGAT-CGGATCCGATCT
130 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG-TCCGATCT
** * *
19594535 TAGACTGGGAATGAACTCCATATGCTTAGACTGGTAATGAACTCTGTATGCCTAAGTCAACCCAC
194 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
19594600 GGAACGAGCGTGCGGGCACTCAGCCGACTAGAGGGGCTGGATGCGCAAGCCGGGGATCGATCGGG
259 GAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGG
* * * * * *
19594665 TCCCCCTATGCGTGCTACCGATCCTGCTGCCGCAA-CCTCCGGTCCGGTACAATCTCAGACTGGG
323 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-CGGTCTGGTCCGATCTTAGACTGGG
* ** **
19594729 AATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAGCGGATGGGCGGGCACTACGCCGGTTAG
387 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
* * * * *
19594794 AGAGACGGGATACGCAAGCTGTGGATCGATAAGGTGGTAGGTGAGTTTAGGAACATCTTCATATT
452 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
19594859 TCTGCATGCCAATGCCATTTTTATGGCGTGTAAATCCATAC-ATGGTCCCTTAAGCCTTCACGTG
517 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * ** **
19594923 AAGTTTCATGGCAAGACGACTCATTTTCTATTTGTCACGATTTTTGAAACTTTTTATTGTTCAGG
582 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGG
* * * * * *
19594988 ATTTTTTTAAATTTCTTCGGAAGGATTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTCT
647 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
19595053 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
712 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
19595118 AAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGTCAGCAAACCTGTAAAATCTCAAATGCT
777 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
19595183 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
842 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
19595234 TAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCGATTGT
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGT
* * * *
19595299 CGGAACCCCGATGCCGCCGGTCAGGTTCTCCGACGATGCCCCGACGATGGTACCCTGACGAAGAA
64 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * * *
19595364 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCCCGATCCGATCTGATC
128 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
19595429 TTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
193 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
19595494 CGAAATGAGCGTGCGGGTGCTCAATCGGGCAGAGGGGTGGGATGCTCAAGTCGGGGATCGGTCGG
258 CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGG
* * * *
19595559 GTCCCCCTCTACGTGCTGCC-ACTCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG
322 GTCCCCCTCTGCGTGCTGCCGA-TCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * * * *
19595623 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGATCGGGCGGGCGGGCACAACACCGGCTA
386 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
* * * * *
19595688 GAGAGAC-GGATGCGCAAGCCGTGGAACGATAGGGTGGTAGTTGGGCTTAGACACATTTTCATAT
451 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
19595752 TTCTATGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATAAAATGTTCCCTTAAGCCTTCACGT
516 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
19595817 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGTTTCAG
581 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG
* *
19595882 GATTTTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTT
646 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
19595947 TTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
711 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
19596011 AAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
776 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
19596076 TTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGGGCCAATA
841 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * *
19596128 TAAGGGCCAAGT-CAAGGA-CCATCACACATCATGTGCGCAC-CCCCCCGGTCTCCCGATCATCG
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
*
19596190 GAACCCCAATGCCGCCGGTCAGGTTCTCCGAGGTGCTCCGACGATGGTGCCCC-AGCGAAGAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAA
** *
19596254 ATGC-GCACCAGCACATGCCCGAGCCCAGCATGTATTGTCGCAACCCTCGGTCCGGTCCGATCTT
130 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * * * *
19596318 CGGCTAGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACG
195 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
19596383 AAACGAGCGTACGGGCGCTCAGTCGGGCAGAAGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGT
260 AAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGT
* * * * * *
19596448 CCCTCTCTGCATGCTGCCGATCTTACTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAA
324 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * * * *
19596513 TGAACTTCATATGCCTAAGCCAACCAATGAAACGAGCGCGGGCGGGCGGGCACTACGTCGACCAA
389 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GCGGGCGGGCGGGCACTACGCCGGCCAG
* * *
19596578 AGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATT
452 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** *
19596643 TCTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCCTTCACGTG
517 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * **
19596708 AAGTTTCTTGGCAAGACAACTCATTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGGTTTC-G
582 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGG-TTCAG
* * *
19596772 GATTTTTTAAAATCTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTA-ACCGTGATCCTTGTATT
646 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATT
* *
19596836 TTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAATGTA-AAGATTTTGTGACCATTTG
710 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
19596900 AAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGACAGCAAACTTGCAAAATCTCAAATG
775 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19596965 CTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATA
840 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
19597018 TAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCGTACACCCCCCGGGCCCCCGATCGTCG
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * * * * *
19597082 GAACCCCAACGCTGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGATGAAGAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCC-GAGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * *** * *
19597147 ATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCATGACCCTCGGTCTGGTCTGATCTT
130 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* *
19597212 AGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAATGTCAACCAAC
195 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCAC
* * * * * * *
19597277 GAAATGAGCGTGTGGGTGCTCAGCCGGCCAGA-GGGC-GAATGCGCAAGTCGGGGATCGATTGGG
259 GAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGG
* * * * * * *
19597340 TCCCCCACTGCGTGCTGTCGATCCTGTTGTCGTAACCCTCGGT-TCGGTCCAATCATAGACTGGG
323 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGG
* * * *
19597404 AATGAACTCCGTATGCATAAGCCAACCGATGAAACGAGCGGGCGGACGGGAGGCACTACGCCGGG
387 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--GCG-GGCACTACGCCGGC
* *
19597469 CAGAGAGACGGGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCAT
449 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
19597534 ATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCAC
514 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
19597599 ATGAAGTTTCATGGCAAGACGATTCGATTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
579 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
*
19597664 AGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
644 AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
19597729 TTTT-TTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTT
709 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
19597793 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAAT
774 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * **
19597858 GCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCAGCCAATA
839 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
19597912 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCTCCGGCCCCTCCGATCGT
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGT
** * * * *
19597977 CGGAACCCCAATGCCATCGGTTAGGTTCTCCGACGATTCTCCGGCGATGGTGTCCCGACGAAGAA
64 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * **
19598042 AAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGTAACCCTTGGTCTTGTCCGATC
128 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * * *
19598107 TTAGACTGGAAATGAACTCTGTACGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTA
193 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * * * **
19598172 CGAAACGAGTGTGTAGGCACTCAGTCTGCCAGAGGGGCGGGATTCACAAGCCAAGGATCGGTCGG
258 CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGG
* * ** * * * * *
19598237 GTCCACCTCTGCTTGCTGCCGATCCTATTGCCGTAACCCTCAGTTTGATCCGATCTTAGACTGGA
322 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
19598302 AATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAG
387 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
* *
19598367 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCCCATCTTCATATT
452 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** *
19598432 TCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTG
517 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
*
19598497 AAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGG
582 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGG
* * *
19598562 ATTTTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCCAAACATGGTAGACGTTATCCTTGTATTTT
647 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
19598627 TCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAA
712 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
19598692 AAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCT
777 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
19598757 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
842 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
19598808 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCATTG
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * * * **
19598873 GAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTTCGATGATGGTGCCCCGGTGAAGAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* ** * **
19598938 ATGCAGCACCAGCACATGCTTGAGCCCAACATGTGCTGTTGCAACCCTCGGTCC-G---G-TC--
130 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* *
19598996 ---C-------G-A-TCT-TA----T--ACTGGGAATGAACTCCGTATGCCTAAGTGAAGCCACG
195 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
19599042 AAACGAGCGTACGGGCGCTCAG-CTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGG
260 AAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGG
* * * * **
19599106 TACCCCTCTGCATGCTGCCGATCCTGCTGCTGGAACCCTCGGTCTGGTCAAATCTTAGACTGGGA
323 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
***
19599171 ATGAACTCCGTATGCCTAAGCCAATTAACGAAACGAGCGGGCAGGCGGGCGGGCGAGCACTACGC
388 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGC--G-G-GCACTACGC
* * * * * * *
19599236 CGACCTGAGAGACGAGATGTGCAAGCCGTGGATAGATAGGGTAGTAGTTGGGTTTAGGCACATCT
445 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
19599301 TCGTATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
510 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
19599366 TCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCTTGATTTTTAAAAATTTTTGCG
575 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
* * * * *
19599431 GTTCGGGATGTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATACTT
640 GTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
19599496 GTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACC
705 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
19599561 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTC
770 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
19599626 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGCCAATA
835 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
19599683 TAAGGGCCAAGTACCAGCACCCATCACACACCATGTGCGCACACCCTCCCGGCCCCCCCGATCGC
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGG-CCCCCCGATCGT
* * * *
19599748 CGGAACCCCAATACCGTCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
64 CGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GAGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * * * *
19599813 AAATGTGGCACCAGCACATGCCTGAGCCCAGCATCTGCTGCCACAACCCTCGGTCCAGTCTGGTC
128 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
** *
19599878 TTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCTACCCA
193 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
19599942 TGAAACGAGCGTTCGGGCGCTCAG-CTGGCCAGAGGTGTGGGATGCGCAAGCCGGGGATCGGCCT
258 CGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCG
* * * * * * * * *
19600006 GGTCCCCCTCTGCGTGATACCAATCCTACTGCTGTAACCCTCAGT-TCGGTCTGATCTTAGACTT
321 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTG
* * *
19600070 GGAATGAACTCTGTATGCCTAAGCAAACCGACGAAACGAGC--G-GGGCGGGCACTACGACGGCA
385 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC-
* * * *
19600132 CA-AAAGCCGGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
449 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * * *
19600196 ATTTCTGTGTGCCAATGCCACTTTTGTGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
514 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* ** **
19600261 ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTC
579 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * * *
19600326 AAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACATGGTAGACATGATCCTTGTAT
644 AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
19600391 TTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
709 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
19600456 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
774 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* ** * *
19600521 GCTCTTTAAGGGGGTATGAGTTCTCGAGGTTCAATGAGGGATAGGCGGCTAATA
839 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
19600575 TATGGGCCAAGTACCAGCACCCATCGCACACCATGTACGCACACCCCTCCCGGCCCCTCAATCGT
1 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCGATCGT
* * * * *
19600640 CGAAACCTCAAGGCCGTCGGTCAGGTTCTCTG-GCAATGCTCCGACGATGGTGCCCCGACGAAGA
64 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAG--ATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * *
19600704 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCGTTGATCCAGTCCGAT
127 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
19600769 CTTAGACTGGGAAAGAACTCCGTAT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
192 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
19600833 ATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCCGAGGATCGATCG
257 ACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCG
* *** * * **
19600898 GGTCCCCCTCTGTGTGCTGTTAATCCTGTTGTCGCAACCCTCAAT-TCGTGTCCGATCTTAGACT
321 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-G-GTCCGATCTTAGACT
*
19600962 GGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGTGGGCAGGCGGGCACT
384 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC------G--GGCGGGCACT
* * * * * * *
19601027 ACGTCGGCTAGAGAGACGGGATGTGCAAGCCGTCGATCAATAGGTTGGTAGGTGGGTTTAGGAAC
441 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
19601092 ATCTGCATATTTCTACGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATG
506 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
19601148 ATCCTTGTAT
Statistics
Matches: 5975, Mismatches: 716, Indels: 211
0.87 0.10 0.03
Matches are distributed among these distances:
867 1 0.00
868 168 0.03
870 2 0.00
872 7 0.00
874 3 0.00
875 58 0.01
876 415 0.07
877 112 0.02
878 2 0.00
881 9 0.00
882 6 0.00
883 50 0.01
884 10 0.00
885 13 0.00
886 12 0.00
887 250 0.04
888 38 0.01
889 100 0.02
890 751 0.13
891 592 0.10
892 506 0.08
893 331 0.06
894 815 0.14
895 876 0.15
896 267 0.04
897 174 0.03
898 112 0.02
899 2 0.00
901 2 0.00
902 174 0.03
903 4 0.00
904 113 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTT
TTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
Found at i:19597238 original size:26 final size:26
Alignment explanation
Indices: 19597209--19597261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19597199 CTGGTCTGAT
*
19597209 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19597235 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19597261 C
1 C
19597262 CTAATGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19599920 original size:25 final size:26
Alignment explanation
Indices: 19599877--19599928 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19599867 CCAGTCTGGT
19599877 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19599903 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19599928 C
1 C
19599929 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19600796 original size:25 final size:25
Alignment explanation
Indices: 19600763--19600818 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
19600753 GTTGATCCAG
19600763 TCCG-ATCTTAGACTGGGAAAGAAC
1 TCCGTATCTTAGACTGGGAAAGAAC
*
19600787 TCCGTATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAAAGAAC
*
19600812 TCTGTAT
1 TCCGTAT
19600819 GCCTAAGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (25 bp):
TCCGTATCTTAGACTGGGAAAGAAC
Found at i:19601562 original size:29 final size:26
Alignment explanation
Indices: 19601521--19601597 Score: 118
Period size: 29 Copynumber: 2.8 Consensus size: 26
19601511 TGATGGTGCC
19601521 CTGGCGAATGAACTCCGTATGCTTAGA
1 CTGG-GAATGAACTCCGTATGCTTAGA
19601548 CTGGGAATGATGAACTCCGTATGCTTAGA
1 CTGGG-A--ATGAACTCCGTATGCTTAGA
19601577 CTGGGAATGAACTCCGTATGC
1 CTGGGAATGAACTCCGTATGC
19601598 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
26 16 0.34
27 5 0.11
28 1 0.02
29 25 0.53
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCTTAGA
Found at i:19602489 original size:26 final size:26
Alignment explanation
Indices: 19602453--19602505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19602443 CCAGTCGAAT
* *
19602453 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19602479 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19602505 C
1 C
19602506 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19603370 original size:26 final size:26
Alignment explanation
Indices: 19603334--19603386 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19603324 CCAATCCGAT
*
19603334 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19603360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19603386 C
1 C
19603387 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19605468 original size:898 final size:898
Alignment explanation
Indices: 19603651--19608172 Score: 5920
Period size: 898 Copynumber: 5.1 Consensus size: 898
19603641 CTGGTCTGAT
* * *
19603651 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * *
19603716 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGC-CGGGTCCCCCTCTGCATGTTGCCAATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTC-AGTGCCCCTCTGCATGCTGCCAATC
* * * * * ** *
19603780 CTGCTGCCGTAATCCTCGATCTAGTCGGATCTTACACTATGAATGAACTCCGAATGCCTAAGCCA
130 CTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19603845 ACCGACAAAACGAGTGGGCGGGCGGGCGGGCA-TGACGCCGGCCAGAGAGATGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT-ACGTCGGCCAGAGAGACGGGATGCGCAAGC
* ***
19603909 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
259 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19603974 TTTATGGCTTATAAATTTATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
19604039 CTCGCTTTCTATTTTTCTTGATTTTTGACACTTTTTACGGTTCG-GGATTTTTTTAAATATTTTT
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAAAT-TTTTT
* *
19604103 -GGAAGGAATTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
* *
19604167 AAATTCAGGTAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
19604232 GGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCCTTAAAGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
* * * * *
19604297 TTCTCGAGGTTTGATTAGGGAAAGGGGGCCAATATAAGGGCCAAGTACTAGCAGCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACAT
* * *
19604362 CATGTGCGCACACCCCCTGGCCCCCCCGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCA
712 CATGTGCGCACACCCCCTGG-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * *
19604427 GCGATGCTCCGACGATGGGGCTCCGGCGAAGAAAAATGTGGTACCAGCACATGTCCGAGCCCAGC
776 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * *
19604492 ATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCCGAATG
841 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19604550 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
19604615 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGCTCAATGCCCGTCTACATGCT-CTCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTCAGTGCCCCTCTGCATGCTGC-CAATC
** * *
19604679 CTGCTGCCGTAACCCTCTATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTCAGCCA
130 CTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19604744 ACCGACGAAACGAGCGGGCGGGGGGGCGGGCACTACGTCGACCACAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ***
19604809 ATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTATGTGCCAATGCCATTT
260 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
19604874 TTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* **
19604939 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTT-GAGGATTTTTTAAAATTTTTTCG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAAATTTTTTCG
* ** *
19605003 GAAGGACTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAACAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAA
* * * *
19605068 TTCAGCTAAAGACTTGAAGTGTACAAGATTTTGTGACCAATTGAAAAATGTGTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
19605133 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
*
19605198 TCGAGGTTTGATGAGGGATAGGGGGCCAATAAAATGGCCAAGTACCAGCACCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCAT
* **
19605263 GTGCGCACACCCCCTGGCCCCCTCGATCGTCGAAACCTTAATGCCGTCGGTCAGGTTCTCCGGCG
715 GTGCGCACACCCCCTGGCCCCC-CGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * *
19605328 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGACACCAGTACATGCTCGAGCCCAGCATG
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** *
19605393 TGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
844 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * * *
19605448 CTTAGACTGGGAACGAACTCCATATGCCTAAGTCAACCCATTAATTAAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
19605513 CGGCTAGAGGGGCGGGATGCACAAGCCGGGGATC-GATC-GGGTCCCACTCTGCGTGCTGCCAAT
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTCAGTG-CCC-CTCTGCATGCTGCCAAT
* * * *
19605576 CCTGCTACCGTAACCATCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGGCTGAGCC
129 CCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * * * **
19605640 AACCGATGAAATGAGCGATCGGGCAGGCGGGCACTATGCCAGCTGGAGAGACGGGATGCGCAAGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
19605705 CATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATT
259 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * * * *
19605770 TTTATGGCTAGCAAATTCTTACAATAGTCCCTTAAGCCCTCACGTGAAGTTCCATCGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
19605835 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTC
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAAATTTTTTC
* * * * * *
19605899 AGAAGGATTTTTGGCGCCAAACTTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAC
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA
* *
19605964 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
19606029 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT-AAGGTGGTGTGAG
583 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAG
** * * *
19606093 TTCTCGAGGTTTGATGAGGGATAGGGTACCAACATAAGGGCCAAATACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACAT
* * * **
19606158 CATGTGCGCACACCCCCTCGGCCCCCCGACCGCCGGAACCTCAATGCCGTTTGTCAGGTTCT-C-
712 CATGTGCGCACACCCCCT-GGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
**
19606221 -CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGC
776 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * **
19606277 ACGTGCTGCCGCAAACCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTTATG
841 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG-TATG
* ** * * ** * **
19606336 CTTAGACTGGGAATGAAATAAGTCTGCCTAAGTAAACCCAAAAAATGAGCGAGCGGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
19606401 CTGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAG-TC-GGGTCCCCCCTCGACGTGCTGTCGA
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTCAGTG-CCCCTCT-G-CATGCTGCCAA
* * * ** * *
19606464 TCCTACTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACACCATATGCCTAAGC
128 TCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
19606529 CAACCGACAAAACGAGTGGGTGGGTGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGCG
193 CAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * * *
19606594 CAAGCCAGGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATACCAATG
254 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
19606659 CCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
19606724 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAATTT
384 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAA-AT
*
19606788 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGAA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCA
* * * *
19606853 CAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGGCCATTTGAAAAAATTGTCTCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
19606918 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGAGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGT
* ** * * *
19606983 GTGAGTTCTCGAGGTTTGATGAGGGATACGGGGATATTAT-ATGGGCTAAGCACCAGCACCCATC
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAT-GGCCAAGTACCAGCACCCATC
** * ** * *
19607047 GCACATCATGTGCGCACACCCCC-AACCCCCAGATCG-TTAGAACCCCAATGCCGCCTGTCAGGT
706 GCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCGA-AACCCCAATGCCGTCGGTCAGGT
* * *
19607110 TCT-C--CGA-----C-A--A---TGCTCCGGCGAAGAAAAATGCTGGCACCAGCACGTGCCCGA
770 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGA
* * ** *** * *
19607161 GCCCAGCAAGTGCTGTCGCAACCCTCTATCCAATCCGATCTTAGACTGGGAATGAACTCCGCATG
834 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
19607226 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
19607291 CGGCCTGAGAGGCGGGATGCGCAAGCCGGGGATCGGC-CAGGTGCCCGTCTGCATGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTCA-GTGCCCCTCTGCATGCTGCCAATC
* * * * *
19607355 CTGTTGCCATAACCTTTGGTCCT-GTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCGTAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
19607419 AACTGATGAACCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGT
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * **
19607484 CGTGGATC-A-AGGGTGGTAGCTACGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
259 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19607547 TTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19607612 CTCGTTTTATATTTTTCATAATTTTTGAAACTTTTTACGGTTC-AGGA-TTTTTAAAATTTTTTT
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAAATTTTTTC
* * *
19607675 GGAAGGAGTCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCATAAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAA
* * *
19607740 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
19607805 ACACTTTAATAGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
* * *
19607870 CTTGAGGTTTGATGAGCGATAGGTGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
19607935 TGTGCGCACACCTGCCC-GGCCCCCCCGATCGACGGAACCCCAATGCCGTCGATCAGGTTCTCTG
714 TGTGCGCACACC--CCCTGG-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
** *
19607999 GCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
776 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
19608064 ATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATG
841 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
19608122 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
19608173 GGCGAGCACC
Statistics
Matches: 3152, Mismatches: 415, Indels: 115
0.86 0.11 0.03
Matches are distributed among these distances:
880 203 0.06
881 49 0.02
882 12 0.00
883 185 0.06
884 1 0.00
885 51 0.02
886 3 0.00
887 95 0.03
888 95 0.03
889 115 0.04
890 142 0.05
891 75 0.02
892 4 0.00
893 37 0.01
894 213 0.07
895 247 0.08
896 128 0.04
897 321 0.10
898 734 0.23
899 440 0.14
900 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTCAGTGCCCCTCTGCATGCTGCCAATCC
TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCA
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCTGGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19605473 original size:26 final size:26
Alignment explanation
Indices: 19605422--19605474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19605412 CCAGTCTGAT
* **
19605422 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCATATG
19605448 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
19605474 C
1 C
19605475 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:19607229 original size:26 final size:26
Alignment explanation
Indices: 19607200--19607252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19607190 CCAATCCGAT
19607200 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
19607226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
19607252 C
1 C
19607253 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19608136 original size:26 final size:26
Alignment explanation
Indices: 19608096--19608148 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19608086 CTGGTCTGAT
19608096 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
19608122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
19608148 C
1 C
19608149 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:19613414 original size:4 final size:4
Alignment explanation
Indices: 19613405--19613430 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
19613395 GACAAAACGA
19613405 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
19613431 ACTACGTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:19616211 original size:891 final size:888
Alignment explanation
Indices: 19609873--19626012 Score: 19422
Period size: 891 Copynumber: 18.2 Consensus size: 888
19609863 CTTAGACTGT
* * * * *
19609873 GGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTAGATCGATAGGGTGATA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
19609938 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
19610003 ACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACCCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** * *** * * * *
19610068 ATTTTCAAAAGTTTTTACGGTTTAAGATTTTTAAAAATTTTTTTGGAAGGGGTTTTGGCCTCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
19610133 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG--CAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
19610196 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTCGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
19610261 AGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
19610326 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGCGCACACCCCCCGGCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * * *
19610391 CGCCCGATTGCCAGAACCCCAATGCCGCCAGTCAGGTTCTTCGACGATGCTCCGTCAATGTTGCC
521 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-TC--CGA-----CG---ATGGTGCC
* * ** *
19610456 CCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTACAATCCTCGGT
575 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT
** * * * *
19610521 CCACTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGCCT
639 CCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
19610586 AAGTCAACACACGAAACAAGCGTGCAGGCGCTCAGCCGGCCAGAAGGGCGGGATGTGCAAGCTGG
704 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * ** *
19610651 GGATCG-GCTGGATCCCCCTCTGCGTGCTGCCGATCCTACTGCCATAACCCTCCA-TCCGGT-CG
769 GGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCT-CAGTTCGGTCCG
* * * *
19610713 ATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGC
832 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GC-GG-GAC
** * *
19610776 GGGCGGGCGGGTGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGT
1 GGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** *
19610841 GGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAAT
62 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
19610906 TTATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTT
127 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * *
19610971 CACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
192 CATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
19611036 CCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGACGTGCATAAAAAAATTCAGCTAAAAACT
256 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
19611101 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
321 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
19611166 CTGGCAGCAAACCTGTAAAATCTCGAAA-GCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATG
386 CTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** * * * *
19611230 AGGGATAGGGGGCCAATATAAAAGCCAAGTACCAGAACCCATTGCACATCATTTGTGCACACTCC
450 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CC
* * * *
19611295 CCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCT-CCGACG
514 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCC-CCG
* * * * *
19611359 ATGGTGCTTCGGTGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAACATGTGCTGCTGCAA
578 A--------C---GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
19611424 CCGTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACT-C
632 CCCTC-GTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* ** * * * * * *
19611488 ATATTACTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAGAAGGGCCGGATGCA
696 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
19611553 CAAGCC-AGGGATCGATTCGGGTCCCCCTCTGCGTGTTGTCGATCCTACT-CCACAACCATC-GA
761 CAAGCCGA-GGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAG-
* * *
19611615 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCAACG-AA--A-C--GA
823 TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGA
19611673 -
888 C
* * * *
19611673 --GCGTGCGGGTACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * ** * *
19611736 GGTGGGTTTGGGTACATCTTCATATTTCTGTGTGCCGATGCCATTTTTGTGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
** *
19611801 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTTGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** ** *
19611866 ATTTTCAAAACTTTTTGA-GGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAA
196 ATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
19611930 ACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
19611995 GTATACAAGATTTTGGGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
19612060 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
19612125 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGC
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * *
19612190 CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTTAGGTTCT-CG--G-TGATGCTCCGGCGATG-
520 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGA
* * *
19612250 ---GTGC--C-CCA--AC---CCCGAGCCCAGCATGTGCTGCCGCAACCCTTGTTTCGGTTCGAT
585 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCCGGTTCGAT
* * * * * *
19612304 CTTAGACTGGGAATGAAATCCGTATGCGTCGACTAGGAATGAACT-CGTATGTCTAAGTCAACTC
649 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
19612368 ACGAAACAAGCATGCGGGCGCTTAGCCGGCTAGAGGGACGGGATGCGCAAGCCGGGGATCGACCG
714 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG
* * * * ** * ** * *
19612433 GGTCACCCTTTGCGTGTTACCGATCCTGTTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGG
779 GGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGG
*
19612498 GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC-GGAC
844 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * *
19612542 GGGCTGGCGGGCACTATGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
19612606 GGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
19612671 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATTGAAAGACGACTCGTTTTCTATTTTTCACT
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-T
* * * * * * *
19612736 -ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCAGAATGAGCTTCGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
19612800 ACTTGGTAGACGTGATTCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
260 ACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * * *
19612865 AGTGTACAATATTTTGTGACCGTTTGAAAAAATTGTCTTCAACTT-AGACACTTTAATGGCTACT
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACT
19612929 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
388 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
** * * * *
19612994 GATAGGGGGATATTATACGGGCTAAGTACCAGCAGCCATCGCACAT--TGTGCGCACACCCCCCG
453 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
*** * *
19613057 G-CCCCTTAATCATCGGAACCCCAATGTCG-CAGGTCAGGTTCTCCGACGATGCTCCGGTGATGG
518 GCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCT-C--CGA-----C---GATGG
* * * * *
19613120 TGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAACCCAGCAAGTGCTGCCACAA-CC-
571 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
19613183 C-T-C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
636 CGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * * * *
19613225 CCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTCAGCCTGCCAGAAGGGCAGGATGCGCTATC
701 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
19613290 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTG-CGCAACCCTC-GATCTGATC
766 CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTC-GGTC
* * * *
19613353 CCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACAAAACGAGCGGGCGGGCGGG
830 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-GGA
19613418 C
888 C
19613419 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
19613484 GGTGGGTTTAGGCATATCTTCATATTCCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
19613549 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCATTTTTTATTTTACGTG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * * *
19613614 ATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGTCCTAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * *
19613679 CTTGGCAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAACAATTCAGCTAAAAACTCAAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
19613744 TGTACACGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
19613809 ACCAAACCTGTAAAATCTCAAATGCTCTTTTAGGAGGGGTGTGAGTTCTCAAGGTTTCATGAGGG
391 AGCAAACCTGTAAAATCTCAAATGCTC-TTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
19613874 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCGCACA-CCCCCGA
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
19613938 CCCCCCCGATCGCCGGAACCCCAATGCC-ACTGGTCAGGTTCTCCGACAATGGTGCCCCAATGAA
519 CCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGGTGCCCCGACGAA
* ** *
19614002 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTTCGCAACCCTCGGTCTGG-TCT
583 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTTC-
** * * * *
19614066 GATCTTAGACTGGGAATGAACTTTGCA-GCTTAGACTGGGAATGAACT-CGTACGCCTAGGTGAA
646 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
19614129 CCCACGAAACGAGCTTGCGGGCGCTCAGCCGGCCAGA-----GGGATGCGCAAG-CTAGGGATCG
711 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCG
* * * * * * *
19614188 ACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCGTAACCCTC-GGTCTGGTCTGATCTTAG
775 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTC-GGTCCGATCTTAG
* **
19614252 ACTGGGAATGAACTCCGTCTGCCTAAGTTAACCGACGAAACGAGCGTGCGGAC
839 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGAC
* * * ** * *
19614305 GGGCAGGCGGGCACTACGTAGGCCAGAAAGATAGGAAGCACAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * *
19614370 GGTGCATTTAGGAAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
19614435 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
19614500 ATTTTTGAAACTTTTTTCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
19614565 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
19614630 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
19614695 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
19614760 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCCGG
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG
* * *
19614825 CCCTCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGGTCCGGCGATGCTG
519 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA---T-----G--G-TG
* * **
19614890 CCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGA-CCCAGCATGTGCTGTTGCAACCCT--
573 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
19614952 T--AG-TC---C--AG--T-----T----T--G-AT-CTTAGA-TTGGAATGAACTCCGTATGCC
638 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * *
19614993 TAAGTCATCCCATTAAACGAGCGTGCGGGCGCTCAG-CGGACCAGAGGTGTGGGATGCACAAGCC
703 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * *
19615057 GAGGATCGGTCGGGTCCCCCTCTGCGTGCCACCGATCCTGCTGCCACAACCCTCA-ATCTGATCT
767 GAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTC-GGTCC
* * * * *
19615121 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAATAAGTGGGCGGAC
831 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-ACGAGCG-GGAC
* * * *
19615182 GGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
19615247 CGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
19615312 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCAATTTTTCAT
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCAT
* *
19615376 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTTGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-A
* * *
19615441 AACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCAA
259 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
19615506 AGTGTACAAGATGTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
19615570 GCAGAAAACCTATCAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
19615635 ATAGAGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCGG
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
19615700 CCCACCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTGTCCGACGATGGTGCCTCGACGAAG
519 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAG
** * * * * ** **
19615765 AAAAATGTAGCCCCAGCACATGCCTGAGCCCAGCATCTACTTTCGCAACCCTCAGTTTGGTTCGA
584 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTTCGA
* ** *
19615830 TCTTAGACAGGGAATGAACTCC-TATGCTTAGACTACGAATGAACTCCGTATGCGTAAGTCAACC
648 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
19615894 CACGAAACGAGTGTACGGGCGCTCAACCGGACGGAGGGGTGGGATGCGCAAGCTGAGGATCGATC
713 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC
* * * * * * *
19615959 GAGTCCCCCTCTGCGTGCTGTCGATTCTACTACCGCAGCCCTCAGTTAGGTCTGATCTTAGACTG
778 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTG
* * *
19616024 GGAATGAATTCCATATGCCTAAGCCAACCGACGAAATGAGCAGGTGGAC
843 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGAC
* * * ** *
19616073 GGGCGCGTGGGCACTACGTCGGCTAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGATA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
19616138 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
19616203 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
19616268 ATTTTTGAAACTTTTTAAGGTTAGGGATTTTTTTAAATTTTTTCGGAA-GATGTTTTTGCCCCAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAA
* * * *
19616332 AATTGGTACACGTGATCCTTGTATTTTTCTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
19616397 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
19616462 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
19616527 TAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGA
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
19616592 CCCCCCGATCATCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGATGAAGCTCCGACGATGGTGC
520 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG---T----T----CTCCGACGATGGTGC
* * *
19616657 CCCGACGAAGAAAAATGTGGTACCAGCACATGCCCGAACCCAGCATGTGCTGCCGCAACCCTCGG
574 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* * * * **
19616722 TCCGGTCCAATCTTAGACGGGGAATGAACTCCGTATGCTTCA-ACTGGGAATGAACTTCGCGTGC
638 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT-AGACTGGGAATGAACTCCGTATGC
* * * *
19616786 CTAAGTTAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
702 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * ** *
19616851 -AGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCAACAACCCT-AGGTCTGGTC
767 GA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTC-GGTC
19616914 C-ATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--GA-
830 CGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * * **
19616966 --GCGGGCGGGCACTACGTCGGCCAGAAAGACGGCAAGCGCAAGTTGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
19617029 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAAGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
19617094 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATTGCAAGACCACTCGTTTTCTATTTTTTATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * * ** *
19617159 GTTATTGAAACTTTTTGCGGTTCGAGA-TTTTCAAAAACTTTTCGGAAGGAATTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
** * *
19617223 CTTGGTAGACGTGATCGATGTATTTTTGTTGGAATGCACAAAAAAATTCAGCAAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
19617288 TGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCGGACACTTTACTGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
19617353 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTATGATAAGCGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * **
19617418 AGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCGCACATCACGTGCGCACA-CCCCTAGCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
19617482 CCCCTGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
521 CCCCCGATCGTCGGAACCCCAATG---CC-GTC-GG---T-C-A-GGTTCTCCGACGATGGTGCC
* * * * *
19617547 CCGACGAAG-AAAATACGGCACCAGAACATGCCCGAGCGCAGCATGTGCTGTCGTAACCCTCAGT
575 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT
* * *
19617611 CCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
639 CCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
19617676 AAGTCAACCCACGAAACGATCATGTC-GGCACTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCG
704 AAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
19617740 A-GATCGGT-AGGTCCCCCTCTGTGTGCTACTGATCCTACTGCCGCAACCCTCAGTTTGGTCCGA
768 AGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCGA
* * *
19617803 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACAAGCGGG-C
833 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * **** * *
19617858 GGGCGGGCGAGCACTACGCCATAAAGACAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
19617923 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTAT-TAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT-TGTAAATTCA
* *
19617987 TACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
*
19618052 GATTTTTGAAACTTTTTAGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
19618117 ACATGGTAGACATGATCCCTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
19618182 GTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAAACAC-TTAAAGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
19618246 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGAGTTCTTGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* ***
19618310 TAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCATTTCGG
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG
* * * * *
19618375 CCCCCCCGATCGCCGGAACCCTAATGTCGTCGGTCAGGTTCTCCGGCAATGCTGGTGCCCCGACG
519 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G--ACGATGGTGCCCCGACG
* * *
19618440 AAGAAAAATACAGCACC-G-ACACTGCCCGAGCCCAGCATGTGCTGCCG-AAACC-C-T-CGG-T
581 AAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTT
* *
19618498 C---C----A----G--T---C-CC--AT-CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCA
645 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
19618543 ACCCACGAAATGAGCGTACGGGTGCTCAACCGGCCAGAGAGGCGGGATGCGCAAGCCGAGGATCG
710 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* * * * * * * *
19618608 ACCGAGTCCCCCTCTGCGTGCTGCTGATCCTATTGCTGCAACCCTCAGTCCTGTCCGATCTTGGA
775 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCGATCTTAGA
* *
19618673 CTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAAC---CAGG-C
840 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * *
19618718 GGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGAGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
19618783 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTTATAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
19618848 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * *** * * * *
19618913 ATTTTTGAAACTATTTGCGGTTCATCATTTTTTAAAATTTTTTTGAAAGGATTTTTAGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
19618978 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
19619043 TGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
19619108 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
19619173 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* *
19619238 CCCCCGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCC
521 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-----C---GATGGTG-C
* * * *
19619303 CCCG-TGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAA-CC-C-T
574 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGT
*
19619364 -CGG-TC---C----A----G--T---CT--G-AT-CTTAGATTGGGAATGAACTCCGTATGCCT
639 CCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
19619407 AAGTTAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGTGGCAGGATACGCAAGCCGG
704 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * ** * * * * *
19619472 GGATCGACCGGGTCCCCCTCTGCATGCTATCGGTCCTGCTGCCGGCAATCCTC-GGTCGGATCCA
769 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCC-GCAACCCTCAGTTCGG-TCCG
* *
19619536 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAACGGACGGG-C
832 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--G-CGGGAC
* *
19619596 AGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
19619661 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-CTTTATGGCTTGTAAATTCGT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
19619725 ACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
19619790 ATTTTTGAAACTTTTTGCAGTTCGGGGTTTTTTAAAATTTTTTCGGAAAGGAATTTTGGCCCCAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAA
* * * *
19619855 ACTTGGTAGACGCGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
19619920 GTGTACAAGATTTTGTGATCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19619985 CAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTC-AGCTTTGATGAGGG
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGG
*
19620049 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCG
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* * * * *
19620114 GCCCCCCCGATCGCCGGAAACCCAATGCCACCGGTCAGGTTCTCCAGTGATGCTCCGGCGATCGT
518 GCCCCCCCGATCGTCGGAACCCCAATG---CC-GTC-GG---T-CAG-G-TTCTCCGACGATGGT
*
19620179 GCCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTGCTGCTGCAACCCT
572 G-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
19620242 CGGTCTGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
636 C-GTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
19620307 GCCCAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAG
700 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * ** * *
19620372 CCGACGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGA-TGTCGTGACCCTCAGTCCGAT
765 CCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT-ACTGCCGCAACCCTCAGTTCGGT
* * * * * * *
19620436 CTGATCTTAGACTTGGAGTGAACTTCATATGCCTAAGCCAACTGACAAAACGAGC-GGAC
829 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * * * *
19620495 GGGCGGGCGGGCAGTACGTCAGCCAGAGAGACGGGATGCGCGAGCCATGGATCGATAAGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
19620560 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
19620625 ACAATGCTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** * *
19620690 ATTTTTGAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
19620755 -TTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
19620819 TGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * * *
19620884 AGTAAACCTGTAAAATTTAAAATGCTCCTTAAGGGGGTGTGATTTCTCAAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
19620949 TGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
*** * * ** *
19621014 CCCTTGGATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTGCCCCCG-CGAAG
520 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTG-CCCCGACGAAG
** *
19621078 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAAGCCTCGGTCCGGTTCGA
584 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCCGGTTCGA
* * *
19621143 TCTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACC
648 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * **
19621208 CATGAAACGATCGTGCGGGCACTTAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC
713 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC
* * * * * * * * *
19621273 GAGTCCCCCTCTTCATGCTGCCAATCCTGCTACCGTAACCCTC-GATCCGGTCCCATCTTAGACT
778 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAG-TTCGGTCCGATCTTAGACT
** * * * * *
19621337 GGGGGTGAACTCCATATACCTAAGCCAATCGACAAAACGAGCAGCCTGAC
842 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G--GGAC
* * * *
19621387 GAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATACGCAAGCCGT-GAGTCGATAGGGTGGT
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGT
*
19621451 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
19621516 TACAATGGTCCCTTAAGCCTTGAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * *
19621581 GATTTTTGAAACTTTTTACCGTTCAAGATTTCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
19621646 ACTTGGTAGACGTAATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
19621711 GCGTACAAGATTTTGTGACCATTTGGAAAAAGTGCCCCCATTTTAGACACTTTAATGGCTACTAG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19621776 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
19621841 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCAATCGCACATCATGTGCGCACACCCCCCCG-
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * *
19621905 CCCGCCGATCG-CTGGAACCCCAATACTGTCAGTCAGGTTCTCCG-CGATGGTGCCCTGGCAAAG
520 CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAG
* * * * * *
19621968 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGCGCAGCCGTAACCCTCGATCCAGTCCGA
584 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCCGGTTCGA
** * * *
19622033 TCTTAGACTGGGAATGAACTCAATATGCTTAGATTGGGAATGAACTCCGCATGCCTAACTCAACC
648 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
19622098 CATGAAATGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGACC
713 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC
* * * * * *
19622162 GGGTCCCCCGCTACGTGCTGCCGATCCTACTACCGAAACCATCAG-TCTGGTCTGATCTTAGACT
778 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTC-GGTCCGATCTTAGACT
* * *
19622226 GGGAATGAACTCCGTACGCCTAAGCCAACCGATGAAATGAGC-GGAC
842 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* *
19622272 GGGCGGGCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGT
1 GGGCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
19622336 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
19622401 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
19622466 GATTTTTGAAACTTTTTCCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
19622531 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACAATTCATCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
19622596 GTGTACAAGATATTGTGACAATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
** * * *
19622661 CAATAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTTTCGAGGTTTTATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
19622726 TAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGCGCACACCCCCCAGC
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
19622791 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCAACGGCGATGCTCCGACGATGGTGC
520 CCCCCCGATCGTCGGAACCCCAAT---GCC-G-TCGG-TC-A--G-G-TTCTCCGACGATGGTGC
* * **
19622856 CCCGACAAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGCATGTGCTGCCGCAACCCTCGA
574 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-
* * *
19622921 TCCAGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCTGTATGCC
638 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
19622985 -AAGTCAACACATGAAATGAACGTGCGGGCGCTCAGTCGGCTAGAGGGGCAGGATGCGTAAGCCG
703 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * ** *
19623049 AGGATCGACCGGGT-CCCCTGCTACGTGCTGCTGATCCTGCTATCGCAACCCTCAGTTTGGTCCG
768 AGGATCGATCGGGTCCCCCT-CTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCG
*
19623113 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--
832 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
*
19623166 GGGC---CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
19623228 GGTGGGTTTA-GCGACATCTTCATATTTTTGCCTGGCAATGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGC-ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
19623292 TACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
19623357 GATTTTTGAAACTTTTTATGGTTCGGGATTTTTTATAATTCTTTCGGAAGGATTTTTGGCCCCAG
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * * *
19623422 GCTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAATTCAAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
19623487 GTGTACAAGATTTTGTGA-CATTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTG
325 GTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
19623551 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
19623616 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCACACATCATGTGCACACACCCCCCGG
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * *
19623681 -CCCCCCGGTCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCAGACGATGCTCCGGCAATGGTG
519 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA-----C-G--ATGGTG
* *
19623745 CCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG
573 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** *
19623810 ATCC-AATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
638 -TCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
19623874 CCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGT
701 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * * **
19623939 CGGGGATTG-GCTGGGTCCCCCGCTGCATGCTACCAATCCTGCTACCATAACCCTCCA--TCTGG
766 CGAGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCT-CAGTTC-GG
* * * **
19624001 TCTGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGC-GGAC
828 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * * *
19624061 GGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGAA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
19624126 GGTGGGTTTAGGCACATCTTCATATTTCTGTC-TCCCAATGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
19624190 TACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * * *
19624255 GATTTTTGAAACTTCTTGCGGTTCAGGATTTTTTAAAATTTCTTCGAAAGTAGTTTTGG-CCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
19624319 ACTTGGTATACGTGATGCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
19624384 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATTGCTAATGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19624449 CAGCAAACCTGTCAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
19624514 TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCC-GA
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
** *
19624578 CCCCCCGATCACCGGAACCCCAATGCTGCCGTTCAGGTTCAACGACGATGCTCCGACGATGGTGC
520 CCCCCCGATCGTCGGAACCCCAA---TGCCG-TC-GG-TC-A-G--G-TTCTCCGACGATGGTGC
*
19624643 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
574 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
** ** *
19624708 TTTGGTCTC-ATCTTAGACTGGGAATGAACTTAGCATGCTTAGACTGGGAATGAACTCCGTATGC
638 TCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * **
19624772 CCAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
702 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** * * * *
19624837 GACAATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGA-TGCCGCAACCCTCAGTCCGATCC
767 GAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT-ACTGCCGCAACCCTCAGTTCGGTCC
* * * * * * *
19624901 GATCTTAGACTAGTAGTGAACTTCATATGCCTAAGCCAACCTAC-AAA--A-CGAG-C
831 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
* * * *
19624954 GGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATAGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* ** *
19625019 GGTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTTAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* **
19625084 ACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * ****
19625149 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTGAAAAGTTTTTT-GGAAATCCTTTTTTGGCCCC
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGG-AA-GGAGTTTTGGCCCC
*
19625213 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
258 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
19625278 AAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
323 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
19625343 AGCAGCAAACCTGTAAAATCTCAACTGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATAAGG
388 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
19625407 GATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
453 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
*
19625472 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCAATGATGGT
518 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---GA-----C---GATGGT
* * * **
19625537 ACCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGA-CCCAGCATTTGCTGTAGCAACCCTC
572 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
19625601 GATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
637 G-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * ** ** *
19625666 CCTAAGTCAAACCATGAAACGAGTGTGCGGGTGCTCAGTTGGCCAGAGGGGCGGGATGTTCAAGT
701 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * ** * * *
19625731 CGGGGATCGATCGGGTTCCCCTCTGCGTGTTGTCGATCCTACAGCCATAACCCTCGGTCCGATCC
766 CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCC
* * * *
19625796 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGC
831 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGAC
* * * * *
19625857 GGGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGTAAGCCGTGCATCGATAGGGTGGCA
1 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* ** *** * *
19625922 GCTGGGTTTAGATACATCTTCATATTTCTATGTGCCAATGCCATTTTTCTGGCTTGTTAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
19625987 ACAATGGTCCCTTAAGCCTTCACGTG
131 ACAATGGTCCCTTAAGCCTTCACGTG
19626013 TCGTTTCGAA
Statistics
Matches: 13264, Mismatches: 1548, Indels: 850
0.85 0.10 0.05
Matches are distributed among these distances:
859 1 0.00
860 349 0.03
861 202 0.02
862 259 0.02
863 122 0.01
864 42 0.00
865 24 0.00
866 1 0.00
867 6 0.00
868 39 0.00
869 115 0.01
870 535 0.04
871 300 0.02
872 58 0.00
873 6 0.00
874 6 0.00
875 51 0.00
876 8 0.00
877 756 0.06
878 696 0.05
879 151 0.01
880 9 0.00
881 45 0.00
882 11 0.00
883 20 0.00
884 93 0.01
885 494 0.04
886 501 0.04
887 169 0.01
888 416 0.03
889 286 0.02
890 976 0.07
891 1508 0.11
892 403 0.03
893 541 0.04
894 311 0.02
895 531 0.04
896 266 0.02
897 682 0.05
898 632 0.05
899 131 0.01
900 139 0.01
901 3 0.00
902 108 0.01
903 366 0.03
904 125 0.01
905 4 0.00
907 195 0.01
908 73 0.01
909 3 0.00
910 309 0.02
911 186 0.01
912 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCCGGTTCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAC
Found at i:19617657 original size:26 final size:26
Alignment explanation
Indices: 19617621--19617673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19617611 CCTGTCCGAT
19617621 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19617647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19617673 C
1 C
19617674 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19620287 original size:26 final size:26
Alignment explanation
Indices: 19620258--19620308 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19620248 GATCCGATCC
19620258 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
19620284 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19620309 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:19620944 original size:898 final size:898
Alignment explanation
Indices: 19618508--19626012 Score: 9844
Period size: 897 Copynumber: 8.4 Consensus size: 898
19618498 CCAGTCCCAT
* * * * * * *
19618508 CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19618573 CGGCCAGAGAGGCGGGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
19618638 T-ATTGCTGCAACCCTCAGTCCTG-TCCGATCTTGGACTGGGAATGAACTCCGTATCCCTAAGCC
131 TGA-TACCGTAACCCTCAGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
19618701 AACCGACGAAACCA--GG-CGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGC
194 AACCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * **
19618763 TGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACACCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19618828 TTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *** *
19618893 CTCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTCATCATTTTTTAAAATTTTTT-T
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* *
19618957 GAAAGGATTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 GAAA-GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
19619022 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
19619087 GACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19619152 TCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** *
19619217 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTCCGA
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCAG-
* * * *
19619282 CGATGCTCCGATGATGGTGCCCCCG-TGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGC
777 CGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
19619346 ATGTGCTG-TCGCAACCCTCG---G-T-C---C----A----G--T---CT--G-AT-
842 ATGTGCTGCT-GCAACCCTCGATCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19619378 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19619443 CGGCCAGAGTGGCAGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTATCGGTCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
19619508 TGCTGCCGGCAATCCTCGGTCGGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGATACC-GTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19619573 ACCAACGAAATGAACGGACGGGCAGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCA
195 ACCGACAAAACGAGCGGAC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
19619638 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
19619703 A-CTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
19619767 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGGTTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
19619832 TCGGAAAGGAATTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTTTTGGCATGCACAA
451 TCGGAAA-GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
19619897 AAAAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGATCATTTCAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19619962 TTAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19620027 AGTTCTTC-AGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
645 AGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
19620091 CATCATGTGCGCAAACCCCCCCGGCCCCCCCGATCGCCGGAAACCCAATGCCACCGGTCAGGTTC
709 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTC
* * *
19620156 TCCAGTGATGCTCCGGCGATCGTGCCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC-AGC
773 T-CAGCGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
19620219 CCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCGATCCTAGACTGGGAATGAACTCCGTATG
837 CCAGCATGTGCTGCTGCAACCCTCGATC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19620282 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
19620347 CGGCCAGAGGGGCGAGATGCGCAAGCCGACGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * * * * *
19620412 TGATGTCGTGACCCTCAGTCCGATCTGATCTTAGACTTGGAGTGAACTTCATATGCCTAAGCCAA
131 TGATACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19620477 CTGACAAAACGAGCGGACGGGCGGGCGGGCAGTACGTCAGCCAGAGAGACGGGATGCGCGAGCCA
196 CCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
19620542 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
19620607 TATGGCTTGTAAATTCATACAATGCTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
19620672 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTCAGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
19620737 AAGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAAT
456 AAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
19620801 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * * *
19620866 ATTTTAATGGCTACTGGCAGTAAACCTGTAAAATTTAAAATGCTCCTTAAGGGGGTGTGATTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
19620931 CAAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*** *
19620996 TGCGCACACCCCCCCGGCCCCTTGGATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTC--C--
716 TGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCAGCGA
19621057 -G----G-CGATGGTGCCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
780 TGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
19621115 TGCTGTTGCAAGCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
845 TGCTGCTGCAACCCTCGAT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
19621170 TTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCATGAAACGATCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19621235 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTTCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * ** * *
19621300 TGCTACCGTAACCCTC-GATCCGGTCCCATCTTAGACTGGGGGTGAACTCCATATACCTAAGCCA
131 TGATACCGTAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19621364 ATCGACAAAACGAGCAGCCTGACGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATACGCA
195 ACCGACAAAACGAGC-G---GACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
19621429 AGCCGT-GAGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
256 AGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
19621493 CATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGAAGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * ** *
19621558 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCAAGATTTCTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
19621623 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATTCTTGTATTTTTGTTGGCATGCACAA
450 TTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
19621688 AAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGGAAAAAGTGCCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
19621753 TTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19621818 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCAATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19621883 ATCATGTGCGCACACCCCCCCG-CCCGCCGATCGCTGGAACCCCAAT---A-CTGTCA-G---TC
710 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTC
* * * * *
19621939 AG-G-TTCTCCG-CGATGGTG-CCCTGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
775 AGCGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * **
19622000 GCATGCGCAGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAATATG
840 GCATGTGCTGCTGCAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19622060 CTTAGATTGGGAATGAACTCCGCATGCCTAACTCAACCCATGAAATGAGCGTGCGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19622124 CGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCGCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
19622189 T-ACTACCGAAACCATCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCA
131 TGA-TACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** *
19622253 ACCGATGAAATGAGCGGACGGGCGGGCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGC
* * *
19622317 CATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
19622382 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19622447 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTCCAGTTCGAGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
19622512 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACA
454 GAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
19622577 ATTCATCTAAAAACTCGAAGTGTACAAGATATTGTGACAATTTGAAAAAAATGTCCCCATTTCAA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** *
19622642 ACACTTTAATGGCTACTGGCAATAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
19622707 TTCGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
19622772 TGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCAACGGC
714 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTC-TCAGC
* * **
19622837 GATGCTCCGACGATGGTG-CCCCGACAAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGCA
778 GATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
19622901 TGTGCTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCATATG
843 TGTGCTGCTGCAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19622958 CTTAGACT-GGAATGAACTCTGTATGCC-AAGTCAACACATGAAATGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19623021 CGGCTAGAGGGGCAGGATGCGTAAGCCGAGGATCGACCGGGT-CCCCTGCTACGTGCTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT-CTGCGTGCTACCGATC
* * * ** * *
19623085 CTGCTATCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCA
130 CTGATACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
19623150 ACCGACGAAACGAGC-G--GGGC---CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
19623209 GTGGATCGATAAGGTGGTAGGTGGGTTTA-GCGACATCTTCATATTTTTGCCTGGCAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-ACATCTTCATATTTCTGCATGCCAATGCCATT
*
19623273 TTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
19623338 CTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTATAATTCTTTCG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* ** * * *
19623403 GAAGGATTTTTGGCCCCAGGCTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAA
454 GAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
19623468 ATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGA-CATTTTGAAAAAAGTGTCCCCATTTTA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCA
* *
19623532 GACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19623597 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCACACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
19623662 ATGTGCACACACCCCCCGG-CCCCCCGGTCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCAGA
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCAG-
* * *
19623726 CGATGCTCCGGCAATGGTG-CCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
777 CGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
19623790 ATGTGCTGCTGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCATATG
842 ATGTGCTGCTGCAACCCTCGAT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19623848 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19623913 CGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATTGGCTGGGTCCCCCGCTGCATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
19623978 TGCTACCATAACCCTCCA-TCTGGTCTGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCA
131 TGATACCGTAACCCT-CAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19624042 ACCGAAAAAACGAGCGGACGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
19624107 GTGTATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TCCCAATGCCATT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATT
*
19624171 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19624236 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTTGCGGTTCAGGATTTTTTAAAATTTCTTC-
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
19624300 GAAAGTAGTTTTGG-CCCAAACTTGGTATACGTGATGCTTGTATTTTTTTTGGGATGCACAAAAA
454 GAAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
19624364 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
19624429 GGCACTTTAATTGCTAATGGCAGCAAACCTGTCAAATCTCAAATGCACTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19624494 TCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** * *
19624559 ATTTGCGCACACCCCCC-GACCCCCCGATCACCGGAACCCCAATGCTGCCGTTCAGGTTC-AACG
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCA-G
*
19624622 ACGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
777 -CGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * ** *
19624686 CATGTGCTGCCGCAACCCTCGGTTTGGTCTC-ATCTTAGACTGGGAATGAACTTAGCATG
841 CATGTGCTGCTGCAACCCTC-GATCGATC-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
19624745 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*** * *
19624810 CGGCCAGAGGGGCGGGATGCGCAAGCCGACAATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
19624875 TGATGCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGTAGTGAACTTCATATGCCTAAGCCAA
131 TGATACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19624940 CCTACAAAACGA---G-CGGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCT
196 CCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * **
19625001 TGGATAGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
19625066 TATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
19625131 CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTGAAAAGTTTTTT-GG
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGG
**
19625195 AAATCCTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 AAA--GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
19625260 AATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19625325 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAACTGCTCTTTAA-GGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
19625389 TCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
19625454 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG
713 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT-CAG
* * * * *
19625519 TGATGCTCCAATGATGGT-ACCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGA-CCCAGC
777 CGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
19625582 ATTTGCTG-TAGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
842 ATGTGCTGCT-GCAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19625640 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGTGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * **
19625705 TGGCCAGAGGGGCGGGATGTTCAAGTCGGGGATCGATCGGGTTCCCCTCTGCGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
19625770 T-ACAGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 TGATA-CCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
19625834 ACCGATGAAACAAGCGGGCGGGCGGGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGTA
195 ACCGA--CAA-AA-CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * ** ***
19625899 AGCCGTGCATCGATAGGGTGGCAGCTGGGTTTAGATACATCTTCATATTTCTATGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19625964 ATTTTTCTGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTG
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
19626013 TCGTTTCGAA
Statistics
Matches: 5843, Mismatches: 664, Indels: 223
0.87 0.10 0.03
Matches are distributed among these distances:
870 116 0.02
871 59 0.01
873 2 0.00
874 1 0.00
876 1 0.00
877 118 0.02
878 380 0.07
879 96 0.02
880 2 0.00
882 1 0.00
883 3 0.00
884 1 0.00
885 473 0.08
886 24 0.00
887 50 0.01
888 236 0.04
889 126 0.02
890 305 0.05
891 510 0.09
892 388 0.07
893 451 0.08
894 18 0.00
895 319 0.05
896 285 0.05
897 703 0.12
898 603 0.10
899 121 0.02
900 127 0.02
901 1 0.00
902 2 0.00
903 201 0.03
904 120 0.02
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TGATACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCAGCGAT
GCTCCGACGATGGTGCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCTGCAACCCTCGATCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19621174 original size:26 final size:26
Alignment explanation
Indices: 19621145--19621195 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19621135 CGGTTCGATC
19621145 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
19621171 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
19621196 CCTAAGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:19623851 original size:26 final size:26
Alignment explanation
Indices: 19623822--19623874 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19623812 CCAATCTGAT
19623822 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19623848 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19623874 C
1 C
19623875 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19625650 original size:26 final size:26
Alignment explanation
Indices: 19625614--19625666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19625604 CCAGTCCGAT
*
19625614 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19625640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19625666 C
1 C
19625667 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19626162 original size:176 final size:176
Alignment explanation
Indices: 19625853--19626188 Score: 521
Period size: 176 Copynumber: 1.9 Consensus size: 176
19625843 ACAAGCGGGC
* *
19625853 GGGCGGGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGTAAGCCGTGCATCGATAGGGT
1 GGGCGAGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGCATCGATAGGGT
* * * * *
19625918 GGCAGCTGGGTTTAGATACATCTTCATATTTCTATGTGCCAATGCCATTTTTCTGGCTTGTTAAT
66 GGCAGCTGGGTTTAGACACATATTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTCTAAAT
19625983 TCATACAATGGTCCCTTAAGCCTTCACGTGTCGTTTCGAAAGGATA
131 TCATACAATGGTCCCTTAAGCCTTCACGTGTCGTTTCGAAAGGATA
* * *
19626029 GGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
1 GGGCGAGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGCATCGATAGGGT
* * * * *
19626094 GGTAGGTGGGTTTAGGCACATATTCATATTTCTGCT-TGCCAATTCCATTTTTATGGCTTCTAAA
66 GGCAGCTGGGTTTAGACACATATTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTCTAAA
19626158 TTCATACAATGGTCCCTTAAGCCTTCACGTG
130 TTCATACAATGGTCCCTTAAGCCTTCACGTG
19626189 AGTTTTCATG
Statistics
Matches: 144, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
176 143 0.99
177 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (176 bp):
GGGCGAGCGGGCGGGCACGACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGCATCGATAGGGT
GGCAGCTGGGTTTAGACACATATTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTCTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGTCGTTTCGAAAGGATA
Found at i:19626721 original size:26 final size:26
Alignment explanation
Indices: 19626692--19626744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19626682 CCAGTCCGAT
19626692 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19626718 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19626744 C
1 C
19626745 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19627621 original size:26 final size:26
Alignment explanation
Indices: 19627592--19627644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19627582 CCAGTCCGAT
19627592 CTTAGAC-TGGAAATGAACTCCATATG
1 CTTAGACTTGG-AATGAACTCCATATG
19627618 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTTGGAATGAACTCCATATG
19627644 C
1 C
19627645 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCATATG
Found at i:19628429 original size:902 final size:901
Alignment explanation
Indices: 19626035--19630518 Score: 6478
Period size: 902 Copynumber: 5.0 Consensus size: 901
19626025 GATAGGGCGA
*
19626035 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * *
19626100 TGGGTTTAGGCACATATTCATATTTCTGCTTGCCAATTCCATTTTTATGGCTTCTAAATTCATAC
66 TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
*
19626165 AATGGTCCCTTAAGCCTTCACGTG-AGTTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGA
131 AATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * ** * * *
19626229 TTTTTGAAACTTTTTGCAATTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAAC
195 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
* * * *
19626294 -TGGTAGATGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTAGAACT
260 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
* *
19626358 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
19626423 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
19626488 GGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCC-CCGGA
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCGCCGGC
* * *
19626552 CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAGT-ATGCTCCGGTGATGGTGC
520 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
* ** * *
19626616 CCCAACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
585 CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
19626681 TCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
650 TCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
19626746 TAAGTCAACCCACAAAACAAGCGTG-TGGCTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
715 TAAGTCAACCCACGAAACGAGCGTGCAGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** ** * * * * * **
19626810 GGGGATCGACCGGGTCCCTTTTTGCGTGCTGTCGATCTTGCTACTGCAACCCTCGGTCCAATCCG
779 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCCG
* ** *
19626875 ATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAGCGGACGG
844 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGCGGACGG
* * *
19626933 GCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAGGCCTTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
19626998 TTG-GTTTAGGCACATCTTCATATTTCTATG-A-GCCAATGCCATTTTTATGGCTTGTAAATTCA
66 -TGAGTTTAGGCACATCTTCATATTT-T-TGCATGCCAATACCATTTTTATGGCTTGTAAATTCA
* *
19627060 TACAATGGTCCTTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
128 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * * *
19627125 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTGAAATTTTTTCGAAAGGAGTTTT-GACCGAA
193 GATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
*
19627189 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
258 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
19627254 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
323 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19627319 CAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGCATGAGTTCTCGAGGTTTGATGAGGGA
388 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGA
19627384 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCGCCG
453 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCGCCG
* * * * * *
19627449 GCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTTCGGTGATGCTCTGGGGATGGT
518 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
* * * **
19627514 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCGCAACCCTC
583 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
19627579 GGTCCAGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTTGGAATGAACTCCATATG
648 GGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
19627644 CCTATGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCC-GAGGGGCGGGATGCGCAGGT
713 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * ** * *
19627708 TGAGGATCGGTCGTCTCCCCCTCTGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGGTCTGATCC
778 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCC
* * *
19627773 AATCTTAGATTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGCAGACGG
843 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGCGGACGG
* *
19627832 GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCTAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
19627897 TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
66 TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
* *
19627962 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACAACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * ****
19628027 TTTTAAAACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTTGTAAATCCTTTTTTGGCCCCAAA
196 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG-GAA-GGAGTTTTGGCCCCAAA
* * * *
19628092 CTTGGTAGACGTGGTCCTTTTATTTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAG
259 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
* *
19628157 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
19628222 AGCCAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGAT
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGAT
*
19628287 AGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGTACACCCCCGCCGG
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCGCCGG
* * * *
19628352 ACCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTTCGGTGATGCTCCGGGGATGGTG
519 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTG
* * *
19628417 CCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAGCCCTCG
584 CCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
19628482 GTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCTGTATGC
649 GTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * **
19628547 CTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGTAGGGATGCGCAAGCC
714 CTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * * *
19628612 GGGGATCAGCTC-GGTCCAACTCTACGTGCTGCTGATCCTGTTGCCACAACCCTCAGTCTGGTCC
779 GGGGATC-GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCC
* * * ** *
19628676 AATCTTAGACAGCGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGGGGGCGG
843 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGC----GGACGG
* *
19628739 GCGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * *
19628804 TGGGTTTAGGCACCTCTTCATATTTCTGCATGCCATTGCCATTTTTATGGCTTGTAAATTCATAC
66 TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
* *
19628869 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
19628934 TTTCAAAACTTTTTACGGTTTGAGATTTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
196 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
*
19628999 TGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
*
19629064 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
19629129 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGAAGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAG
*
19629194 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCT-CACCCCCCTCTCG
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-TACA-CCCCCGC-CG
* * ** * *
19629258 GCCCCCCCGATCATCGGAACGCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
518 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
* * ** * *
19629323 GCCACGGTGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
583 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
19629388 GGTCTGGTCTGATCTTAGTCTGGGAATGAACTTCGTATTCTTAGACTTGGAATGAACTCCATATG
648 GGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
19629453 CCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGT
713 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * ** * * * *
19629518 TGAGGATCGGCCGTGTCCCCCTCTGCGTGCTACCGATCCTATTGTCGCAACTCTTGGTTTGATCC
778 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCC
* * * *
19629583 GATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGAAAATCGACGAAACGAGTGGACGG
843 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGCGGACGG
*
19629641 ACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
19629706 TGAGTTTAGGCACATCTTCATATTTTTGCCTGCCAATACCATTTTTATGGCTTGTAAATTCATAC
66 TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
*
19629771 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
19629836 TTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACT
196 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* *
19629900 TGGTAGACATAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGT
261 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAATTCAGCTAAAAACTCGAAGT
* *
19629965 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
19630030 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTACTTGAAGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATA
*
19630095 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCT-CACCCCCTCCCG
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-TACACCCCC-GCCG
** * *
19630159 GCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT
518 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
* * * * * *
19630224 GCCTCGATGAAGAAAAATATGGCTCCAACACATGCCCGAGCCCAGTATGTACTGCCGCAACCCTC
583 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
19630289 GGTTTTGTCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
648 GGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
19630354 CCTAAGTCAACCCGCGAAACGACCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGC
713 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * *
19630419 CGGGGATCGGTCGGGTCCCTCTCTGAGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGTTCT
778 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCC
19630484 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
843 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
19630519 CCAACACATG
Statistics
Matches: 3228, Mismatches: 331, Indels: 50
0.89 0.09 0.01
Matches are distributed among these distances:
897 9 0.00
898 464 0.14
899 384 0.12
900 169 0.05
901 368 0.11
902 922 0.29
903 110 0.03
904 3 0.00
905 246 0.08
906 46 0.01
907 507 0.16
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCGCCGGCC
CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGAAAACCGACGAAACAAGCGGACGG
Found at i:19630338 original size:26 final size:26
Alignment explanation
Indices: 19630302--19630354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19630292 TTTGTCTGAT
*
19630302 CTTAGTCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19630328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19630354 C
1 C
19630355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19634043 original size:858 final size:854
Alignment explanation
Indices: 19631239--19637891 Score: 7211
Period size: 858 Copynumber: 7.6 Consensus size: 854
19631229 CTCGTTTTCT
* *
19631239 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGC
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
19631304 CAACTCGTTTTCTATTTTTCATGATTTTTGAATCTTTTTACGGTTTGGGATTTTTTAAAATTTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * * *
19631369 TTGGAAGGAGCTTTGGTCCCAAACTTGGTAGACATAATTCTTGAATTTTTTTTGGAATGCA-AGA
131 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA-A
* * *
19631433 AAAAATTCAGCCAAAAACACGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
195 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
19631498 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
260 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ***
19631563 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGTTGAGTACCAGCACCCATCGCAC
325 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * *
19631628 ATCATGTGCGCACAAACCACGTCGGCCCCCCCGATCGTCGGAACCCCAATGTCACCGGTCAGGTT
390 ATCATGTGCGCAC--ACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
19631693 CTTCCGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGC
452 CTTCCGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
*
19631758 CCAGCATGTGC-GACTGCAACCCACAGTCCGGTCTGATCTTTAACTGGGAATGAACTCTGTATGC
517 CCAGCATGTGCTG-CCGCAA-CC-C--T-C-G---G----TT---T-GG--T---C-C-G-AT-C
* * * * * *
19631822 TTAGACTGGGAATGAACTCTGTATGCCTGAGTCAATCAACGAAACGAGCATACGGGCGCTCAGCC
555 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCC
* * * * * ***
19631887 GACCAGATGGGCGGGATGCGCAAGTCGAGGATCGACCGGGTGCCCCTCTATGTGCTATTGATCCT
620 GGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCT
* ** * * * * *
19631952 ACTACTGCAACCCTCAGTCCGGTTTGATCTTAGACTGTGAATGAACTCTGTATGCCTGAGCCAAT
684 GCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
19632017 CGACGAAACGAGCAGGCAGACACTA-AGAGACGGGATGCGCAAGCCGTGGATTGGTAGGGTGGTA
749 CGACGAAA-GAGCGGGCGGGCACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
19632081 GGTGGGTTTGGGCACATCTTCATATTTCTACATGCGAATGCC
813 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19632123 ATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19632188 CAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
19632253 TTGGAAGGATTTTTTAG-CCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCA-A
131 TTGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACA
19632315 AAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
194 AAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
19632380 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
258 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
19632445 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGT
323 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
19632510 ACATCATGTGCGCACA-CCCCC-GACCCCCCGATCACCGGAAGCCCAATGCCGTCGGTCAGGTTC
388 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
19632573 -T-C-CG--G-T-----GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCAGAGCC
453 TTCCGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
19632627 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTTTGCTT
518 CAGCATGTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
**** * * ** * * ** * *
19632692 GAA-T-TGGGAATG-AAC-ACCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCA--CT
583 -AAGTCAACCAATGAAACGAGCGTACGGGT--GCTC-AGCC-GGCCA-GAG-GGGCGGG-ATGCG
* *** * * *
19632750 C-AGTCGGGGATCGACCGGGTCCCCCACTGTGTGCTGTAAATCTTGCTGCCACAACCCTC-GATT
640 CAAG-CGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAG-TC
* *
19632813 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAACGAGCGGACGGG
703 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA--A---GA---G
* * *
19632878 GGGGTGGGCACTACGTCGGCCGAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGT
760 CGGGCGGGCACTA--------G-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
19632943 GGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCC
816 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
19632982 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGC
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
19633047 CAACTCGTTTTCTATTTTTCATGATTTTT-AAAGCTTTTTACGGTTC-AGGATTTTTTAAAATTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * * * * * * * *
19633110 TTATGGAAGGAGTTTTAGTCCCAAGCTTGGTAGACGTAATCCTTCTATTTTT-TTTGCAAAG-AA
129 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC-ATGCAC
*
19633173 AGAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
193 A-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
19633238 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
257 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* **
19633303 GTGAGTTCTTC-AGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCTGAGTACCAGCACCCATC
322 GTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
19633367 GCACATCATGTGCGCGCAAACCCCGCCGGCCCCCCCGATCGCCGGAACCCCAATCCCGTCGGTCA
386 GCACATCATGT--GCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
19633432 GGTTCTTCCGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC
448 GGTTCTTCCGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC
*
19633497 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTCGACTGGGAATGAACTCCGTA
513 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
19633562 TGCCTAAGTCAACCAATGAAACGATCGTATGGGTGCTCAGCCGGCCAGATGGACGGGATGCGCAA
578 TGCCTAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * ** *
19633627 GTCAGGGATCGGCCGGGTCTCCCTCTGTGTACTGTTGATCCTACTACCACAACCCTCAGTCCGGT
643 G-CGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGT
* * * *
19633692 CTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAGTTGCAGGCGGGCAC
707 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAG-AGCGGGCGGGCAC
* * * *
19633757 TAG-GAGACGGGATGAGCAAGCCGTGGATTGGTAGGGTGGTAGGTGGGTTTGGGCACATCTTCAT
771 TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
19633821 ATTTCTACATGCAAATGCC
836 ATTTCTGCATGCCAATGCC
** ** * *
19633840 AAATTTATCACTTGTAAATTCACT-CAATGGTCCCTTCAGCCTTCATGTGAAGTTTCATGGCAAG
1 ATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
19633904 ACGACTCGTTTTCTATTTTTCACGA-TTTTCACAACTTTCTACGGTTCGGGATTTTTTAAAATTT
65 ACGACTCGTTTTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * **
19633968 TTTCGGAAGGAGTTTTGGTCCCAAACTTTGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCA-A
129 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
*
19634032 GAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
194 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
19634097 TTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA-CTTCAGATGCTCTTTAAGGGGGT
258 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGT
* *
19634161 GTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
322 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
19634226 CACATCATGTGCGCACACCCCCTGGCCCCCCTGATCGCCGGAACCCTAATGCCGCGGGTCAGATT
387 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * ** ** *
19634291 CTTCGGTGATGCTTCGGCGATTGTGCCC-GGTGAAGAAAAATATGGCACCAGCACATGCCCGAGA
452 CTTCCGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
19634355 CTAGCATATGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCC
517 CCAGCATGTGCTGCCGCAA-CC-C--T-CG----G---TT----T-GG--T---C-C-G-AT-CT
* * * * * * * **
19634420 TAGACTAGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGAGTGTTCAGTTG
556 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCCG
** ** *
19634485 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCT-
621 GCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
** * * * * *
19634549 -T-CTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACC
685 CTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
19634612 GACGAAACGAGCGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGAAAGTCATGGATC
750 GACG-AA--A--GAGCGGGCGGGCAC--T-------AGAGAGACGGGATGCGCAAGCCGTGGATC
*
19634677 GATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
801 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19634731 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
19634796 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
*
19634861 TTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
131 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * * * *
19634926 AAAATTCAACTAAAAACACTAAGTGTACAAGATGTTATCACCATTTGAAAAAAGTGTCCCAATTT
196 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
19634991 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
261 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * **
19635056 GTTCTCAAGCTTTGATGAGGGATATGATGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
326 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
19635121 TCATGTGTGCACACCCCCCAGG-CCCCCCGATTGCCGGAACCCTAATGCCGCCGGTTAGG----T
391 TCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTT
* *
19635181 ------T-CTCCGGCGATGGTG-CCTCGACAAAGAGAAATGCGGCACCAGCACATGCCCGAGCCC
455 CCGCGATGCTCCGGCGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * **
19635238 AACATGTGCTGCCACAAACCCTCGGTCCGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCT
519 AGCATGTGCTGCCGC-AACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * **
19635303 AAGTCAACCCACGAAACGAGCGCACGGGCACTCAGCCGGCCAGAGGGG-GGGATGCGCAAGCTGG
583 AAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GG
* * ** * *
19635367 GGATCGACGGGGTCCCCTTCTCCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGAT
647 GGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGAT
*
19635432 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGGGCGGGCGGGCACT
712 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA----GCGGGCGGGCACT
* *
19635497 GCGCCGGCCAGAGAGATGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
772 ---------AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
19635562 ATCTTCATATTTCTTCATGCCAATGCA
828 ATCTTCATATTTCTGCATGCCAATGCC
* *
19635589 ATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
19635654 CGACTCATTTTATATTTTTCACGATTTTTGAAACTTTTCGCAGTTCGAGATTTTTTAAAATTTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
19635719 TTGGAAGGTGTTTTGGCCCCAAACTTGGTCGACAAGATCCTTGTATTTTTTTTGGCATGCACAAA
131 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
19635784 AAAATTCAGCTAAAAAGC-CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
196 AAAATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19635848 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
260 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19635913 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTAACAGCACCCATCGCAT
325 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** ** * * *
19635978 ATCATGTGCACACACCCCCCCGGCCCCCTTGATCGCTAGAATCCCAATGCCGCCGATCAAGTTC-
390 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
19636042 TCCGGCGATGTTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
454 TCC-GCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
19636107 CAGCATGTGCTACCGTAACCCTCGGTCTGATTGGATCATAGACTGGGAATGAACTCCGTACGCCT
518 CAGCATGTGCTGCCGCAACCCTCGG--T--TTGG-TC-----C-------G-A-T-C-T-----T
* * * * * *
19636172 AGACTGGGAATAAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGG
557 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCCGG
* * *
19636237 CCAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTTCCCCCTCTGTGTGCTGCCGATCTTG
622 CCAGAGGGGCGGGATGCGCAAG-CGGGGATCGACCGGG-TCCCCCTCTGTGTGCTGCCGATCCTG
* * *
19636302 CTACCACAACCCTCAATCCAGT-TCGATCTTAGACTGGGAATCG-ACTCCGTATGCCTAAGCCCA
685 CTACCACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAA
* *
19636365 CCGATGAAACGAGCGGGTGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGA
748 CCGACGAAA-GAGC----GGGCGGGC---A------CTAGAGAGACGGGATGCGCAAGCCGTGGA
* *
19636430 TCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTC--ATTTCTGCATGCCAATGCT
799 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19636484 ATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19636549 CGAATCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGA-GGTACGAGATTTTTTAAAATTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTT
* ** *
19636613 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTATG-TGAGCATGCACA
130 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG-GCATGCACA
* * * * *
19636677 AAAAAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTTGCAAAAAGTGTCCACAT
194 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
19636742 TTCAGACATTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTGAAATGCCCTTTAAGGGGGTGT
259 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
19636807 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAGTATAAGGGCCAAGTACCAGCACCCATTGCA
324 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
19636872 CATCATGTGCGCACACCCCCTCGACCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
389 CATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
19636937 TTCGGCGATGCTCCAGCGATGGTG-CTTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
453 TTCCGCGATGCTCCGGCGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
19637001 CCAGCATGTGCTGTCGCAACCCTTGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGGT
517 CCAGCATGTGCTGCCGCAACCC----TC--G---G---TT----T--G---G---TCCG-AT-CT
* * * *
19637066 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
556 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGCCG
* ** * * *
19637131 GCCAGAGGGGCGAGATGCATAAGCCGAGGATCGACCGGGTCCCCCTCTGTGCGCTGCCGATCATG
621 GCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
* * *
19637196 CTACCACAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATCG-ACTCCGTATGCCTAAGCCCA
685 CTACCACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAA
* *
19637259 CCGACGAAACGAGCGGGCGGGCGGGCTTTACGTCGGCTAGAGATACGAGATGCGCAAGCCGTGGA
748 CCGACGAAA-GA----GCGGGCGGGC---A------CTAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
19637324 CCGATAGGGTGGTAGGTGCGTTCAAGCACATCTTCATATTTCTGCATGCCAATGCC
799 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19637380 ATATTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
1 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
19637445 CGACTCGTTTTCTATTTGTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTGAAAATTTTT
66 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
19637510 TTGGAGGGAGTTTTGGCCCCATACTAGGTAGACATGATCCTTGTATTTTGGTTGGTATGCATAAA
131 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
19637575 AAAATTCAGCTAAAAAATCGAACTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
196 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19637640 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGA
261 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19637705 GTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACA
326 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
19637770 TCATGTGCGCACACCCCCTTGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGATCAGGTTC-T
391 TCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTT
* **
19637834 -CGATGATGCAT-CGGCGATGGTGCCCTGATAAAGAAAAATG-GGACACCAGCACATGCCC
455 CCG-CGATGC-TCCGGCGATGGTGCCCTGACGAAGAAAAATGCGG-CACCAGCACATGCCC
19637892 TGATGAGTCA
Statistics
Matches: 4962, Mismatches: 578, Indels: 447
0.83 0.10 0.07
Matches are distributed among these distances:
839 5 0.00
840 5 0.00
841 8 0.00
842 122 0.02
843 7 0.00
844 8 0.00
845 2 0.00
846 3 0.00
849 10 0.00
851 2 0.00
854 51 0.01
855 110 0.02
856 78 0.02
857 12 0.00
858 958 0.19
859 467 0.09
860 8 0.00
861 6 0.00
862 5 0.00
863 5 0.00
864 39 0.01
865 3 0.00
866 4 0.00
867 4 0.00
868 70 0.01
869 12 0.00
870 62 0.01
871 5 0.00
872 1 0.00
873 11 0.00
874 9 0.00
875 204 0.04
876 12 0.00
877 66 0.01
878 14 0.00
879 39 0.01
880 124 0.02
881 56 0.01
882 4 0.00
883 6 0.00
884 368 0.07
885 4 0.00
886 1 0.00
887 2 0.00
888 1 0.00
889 1 0.00
890 4 0.00
891 463 0.09
892 9 0.00
893 2 0.00
894 183 0.04
895 681 0.14
896 447 0.09
897 155 0.03
898 3 0.00
899 2 0.00
900 2 0.00
901 2 0.00
902 2 0.00
903 1 0.00
904 1 0.00
905 3 0.00
906 2 0.00
907 1 0.00
909 2 0.00
912 1 0.00
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (854 bp):
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
CGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCAATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGAT
CGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGGGCGGGCACTAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
GCCAATGCC
Found at i:19634430 original size:26 final size:26
Alignment explanation
Indices: 19634394--19634448 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
19634384 GATCCGATCT
* *
19634394 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
19634420 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
19634446 TAG
1 TAG
19634449 GTCAACCCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:19636181 original size:26 final size:26
Alignment explanation
Indices: 19636145--19636198 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
19636135 GATTGGATCA
*
19636145 TAGACTGGGAATGAACTCCGTACGCC
1 TAGACTGGGAATAAACTCCGTACGCC
19636171 TAGACTGGGAATAAACTCCGTACGCC
1 TAGACTGGGAATAAACTCCGTACGCC
19636197 TA
1 TA
19636199 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTACGCC
Found at i:19637077 original size:26 final size:26
Alignment explanation
Indices: 19637039--19637089 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19637029 TGGTCTGATC
19637039 TTAGACTGAGAATGAACTCCGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
* *
19637065 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
19637090 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:19637718 original size:896 final size:893
Alignment explanation
Indices: 19635284--19637891 Score: 3749
Period size: 895 Copynumber: 2.9 Consensus size: 893
19635274 CTTAGACTAC
** *
19635284 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCACTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * ** * *
19635349 GG-GGGATGCGCAAGCTGGGGATCGACGGGGTCCCCTTCTCCGTGCTGCCGATCCTGCTACCGCA
66 GGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCATGCTACCACA
* *
19635413 ACCCTCGGTCCGG-TCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCGACGAA
131 ACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATCG-ACTCCGTATGCCTAAGCCCACCGACGAA
** * * * * *
19635476 ACGAGCGGGCGGGCGGGCACTGCGCCGGCCAGAGAGATGGGATGCGCAAGCCGTCGATCGATAGG
194 ACGAGCGGGCGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGG
* *
19635541 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCAATTTTTATGGCTTGTAA
259 GTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
* * * * *
19635606 ATTAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTATATTT
324 ACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
19635671 TTCACGATTTTTGAAACTTTTCGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGC
389 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
* * * *
19635736 CCCAAACTTGGTCGACAAGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAG
454 CCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAA
* * *
19635801 CCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
518 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
19635866 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
583 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
19635931 AGGGATAGGGGGCCAATATATGGGCCAAGTAACAGCACCCATCGCATATCATGTGCACACACCCC
648 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * *
19635996 CCCGGCCCCCTTGATCGCTAGAATCCCAATGCCGCCGATCAAGTTCTCCGGCGATGTTTCGGCGA
713 CTCGGCCCCC-CGATCGC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCAGCGA
*
19636061 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAC
776 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
*
19636126 CCTCGGTCTGATTGGATCATAGACTGGGAATGAACTCCGTACGCCTAGACTGG
841 CCTCGGTCTGATTGGATCATAGACTGAGAATGAACTCCGTACGCCTAGACTGG
* * * *
19636179 GAATAAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
19636244 GGCGAGATGCGCAAGCCGAGGATCGACCGGGTTCCCCCTCTGTGTGCTGCCGATCTTGCTACCAC
66 GGCGAGATGCGCAAGCCGAGGATCGACCGGG-TCCCCCTCTGTGTGCTGCCGATCATGCTACCAC
** * *
19636309 AACCCTCAATCCAGTTCGATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCCACCGATGAAA
130 AACCCTCGGTCCGGTTCGATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCCACCGACGAAA
*
19636374 CGAGCGGGTGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
195 CGAGCGGGCGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
*
19636439 TGGTAGGTGGGTTCAGGCACATCTTC--ATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAA
260 TGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAA
* * *
19636502 CTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGAATCGTTTTCAATTTT
325 CTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
19636567 TCACGATTTTTGAAACTTTTTGAGGTACGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCC
390 TCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
** * *
19636632 CCAAACTTGGTAGATGTGATCCTTGTATTTATG-TGAGCATGCACAAAAAAATTTAGCTAAAAAC
455 CCAAACTTGGTAGACATGATCCTTGTATTT-TGTTG-GCATGCACAAAAAAATTCAGCTAAAAAA
* * * * * *
19636696 TTGAAGTGTACAAGATTTTGTGGCCATTTGCAAAAAGTGTCCACATTTCAGACATTTTAATTGCT
518 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
19636761 ATTGGCAGCAAACCTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
583 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
19636826 AGGGATAGGGGGCTAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC
648 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
19636891 CTCGACCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCAGCGA
713 CTCGGCCCC-CCGATCG-CGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCAGCGA
** * * **
19636956 TGGTGCTTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
776 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * * * ** *
19637021 CCTTGGTCTGGTCT-GATCTTAGACTGAGAATGAACTCCGTATGGTTAGATTGG
841 CCTCGGTCTGAT-TGGATCATAGACTGAGAATGAACTCCGTACGCCTAGACTGG
*
19637074 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** *
19637139 GGCGAGATGCATAAGCCGAGGATCGACCGGGTCCCCCTCTGTGCGCTGCCGATCATGCTACCACA
66 GGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCATGCTACCACA
*
19637204 ACCCTCGGTCCGGTTCAATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCCACCGACGAAAC
131 ACCCTCGGTCCGGTTCGATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCCACCGACGAAAC
* * *
19637269 GAGCGGGCGGGCGGGCTTTACGTCGGCTAGAGATACGAGATGCGCAAGCCGTGGACCGATAGGGT
196 GAGCGGGCGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
19637334 GGTAGGTGCGTTCAAGCACATCTTCATATTTCTGCATGCCAATGCCATATTTATGGCTTGTAAAC
261 GGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAAC
*
19637399 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTGT
326 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * *
19637464 CACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTGAAAATTTTTTTGGAGGGAGTTTTGGCCC
391 CACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCC
* * * *
19637529 CATACTAGGTAGACATGATCCTTGTATTTTGGTTGGTATGCATAAAAAAATTCAGCTAAAAAATC
456 CAAACTTGGTAGACATGATCCTTGTATTTT-GTTGGCATGCACAAAAAAATTCAGCTAAAAAATC
* * *
19637594 GAACTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
520 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
19637659 TGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAG
585 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
19637724 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACATCATGTGCGCACACCCCCT
650 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT
* * * ** *
19637789 TGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGATCAGGTTCT-CGATGATGCAT-CGGCGAT
715 CGG-CCCCCCGATCG-CGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGC-TCCAGCGAT
* ** *
19637852 GGTGCCCTGATAAAGAAAAATGGGACACCAGCACATGCCC
777 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
19637892 TGATGAGTCA
Statistics
Matches: 1519, Mismatches: 179, Indels: 30
0.88 0.10 0.02
Matches are distributed among these distances:
894 181 0.12
895 721 0.47
896 444 0.29
897 170 0.11
898 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (893 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCATGCTACCACA
ACCCTCGGTCCGGTTCGATCTTAGACTGGGAATCGACTCCGTATGCCTAAGCCCACCGACGAAAC
GAGCGGGCGGGCGGGCTTTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAAC
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACATGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC
GGCCCCCCGATCGCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCAGCGATGGTG
CCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
GTCTGATTGGATCATAGACTGAGAATGAACTCCGTACGCCTAGACTGG
Found at i:19640542 original size:26 final size:26
Alignment explanation
Indices: 19640513--19640565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19640503 CCGGTCCGAT
*
19640513 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
19640539 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19640565 C
1 C
19640566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19640663 original size:12 final size:12
Alignment explanation
Indices: 19640646--19640674 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
19640636 TCGACTGGGT
19640646 CTGCCGATCCTG
1 CTGCCGATCCTG
19640658 CTGCCGATCCTG
1 CTGCCGATCCTG
19640670 CTGCC
1 CTGCC
19640675 ATAACCCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.45, G:0.24, T:0.24
Consensus pattern (12 bp):
CTGCCGATCCTG
Found at i:19641858 original size:896 final size:894
Alignment explanation
Indices: 19637897--19645966 Score: 10761
Period size: 889 Copynumber: 9.0 Consensus size: 894
19637887 TGCCCTGATG
* * *
19637897 AGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-CTGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * * * * *
19637961 GTATCGATCGAGTCC-CCTTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGA
66 G-ATCGATCGGGTCCGCC-TCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGA
* *
19638025 TCTTAGACTGGGAATGAACTCTGTATGGCTAA-CCAACCGACGAAACGAGCGGGCGAGCGGGCGG
129 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGG
* * * **
19638089 GCGGGCACTACGTCGA-CAAGAGAGACGGGATGCCCACGCCACGGATCGAT-GGGTGGTAGGTGG
190 GCGGCCACTACGTCGAGC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
19638152 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAAT
254 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
19638217 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTT
319 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *** * *
19638282 TGAAACTTTTATGCGGTTCAAGATTTTTTCAAAATTCTT-TCGGAAGGATTTTTGGCCCCAAACT
384 CGAAACTTTT-TACGGTTTGGGATTTTTT-AAAATT-TTCTCAGAAGGAGTTTTGGCCCCAAACT
* *
19638346 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
446 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
19638411 TACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
511 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
19638476 TAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGACAG
576 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** * * *
19638541 GAGGCCAATATAAGGGCCAAGTACCAGCACTAATCGCAGATCATGTGCGAACA-CCCCCAGCCCC
640 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** *
19638605 TTGATCG-CTGGAACCCCAATGCCGCCGGTCAAG-TT---C--T--T-CGACGATGGTGCCCCGA
705 CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTTCGACGATGCTCCGACGATGGTGCCCCGA
* * *
19638660 CGAAGAGAAATATG--GCACCAGCACTTGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCT
769 CGAAGA-AAA-ATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-
* * * * *
19638723 GGTCTGATCTTAGTCTAGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCT-TATGCCTA
831 CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTA
* * * * * * * *
19638787 AGTCAACCCATGAAACGAGGGTGCGGGCACTCAGTCGCCCAAAGGGGCGGGACGCACAAGCCAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * * * ** *
19638852 GATCGACCAGGTCCGCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTAGTTCGGT-TCGAT
66 GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCT-GAT
* * **
19638916 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGATGGGC--G-GG-
130 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* ** **
19638977 CACTACGCCG-GCCAGAGAGACAAGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTA
195 CACTACGTCGAG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** *
19639041 GGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCC
259 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
19639106 TTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTCAAAA
324 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* * * *
19639171 CTTTTTACGATTTGGGATTTTTTAAAATTTTCTCAGAAAGAGTTTTGGCCCCAAACTTGGCAAAC
389 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19639236 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCAAAAAACTCGAAGTGTACAAGAT
454 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
19639301 TTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
519 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* **
19639366 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTTATAGGGGGCCAA
584 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
19639431 TATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCTGG-CCCCCGATCGT
648 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* * * * * *
19639495 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTTCCCCGATGAAGAA
713 CGGAACCCCAATGCCGCCGGTCAGGTT-T-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * *
19639560 AAATG-AGGCACCAGCACATGCCCGAGCCCAACAGGTG-TGGCCGCAACCCTCAGTCCGATACGA
776 AAATGCA-GCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCCG-TCCGA
* *
19639623 TCTT-GTACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTAC-GTATACCTA
838 TCTTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTA
** * * *
19639680 AGTCAACCCACGAAACGAGCGAACGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCGGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* ** * * * * * * *
19639745 GATCGACCGGGTTTGCCTCTATGTGCTGCCGATCCTACTACCTCGACCCTCAGTCTGGTATGATC
66 GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATC
* *
19639810 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCAGGC
131 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGC
* * * **
19639875 AGGCACTACGCCG-GCCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGCAGGT
195 ---CACTACGTCGAG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
19639939 TTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGG
256 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
19640004 TCCCTTAAGCCTTCACGTGAAGTTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
321 TCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* ** * * *
19640069 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGAT
385 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* *
19640133 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTAGAAGTGTACA
450 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
19640198 AGATTTTGTGACCATTTCAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTAGCCGCAAA
515 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
19640262 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTACTCGAGGTTTGATGAGGGATAGGGGG
580 CCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * *
19640327 CCAATATAAGGGCCAAGTACCAGCACCCATCATAAATCATCTGCGCACACCCCCCGG-CCCCCGA
644 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* *
19640391 TCG-CTGGAACCCCAATGCCGTCGGTCAGG-TT---C--T--T-CGACGATGGTGCCCCGATGAA
709 TCGTC-GGAACCCCAATGCCGCCGGTCAGGTTTCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * * * ** *
19640446 GAAAAATGCGGCACCAGCACATTCACGAGCCCAGCGTGTGTTGCCTTAACCCTTGGTCCGGTCCG
773 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCG
*
19640511 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCTGTATGCCTA
837 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* * *
19640569 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGTGGGATGCGCAAGCCAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* ** * * * ** *
19640634 GATCGA-CTGGGTCTGCCGAT-CCTGCTGCCGATCCTGCTGCCATAACCCTTAGTCCAGTCTGAT
66 GATCGATC-GGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGAT
* * * *
19640697 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGG
130 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * *
19640762 CATTACGTCGATCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
195 CACTACGTCGAGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
19640827 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCT
260 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
19640892 TTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTTTGAAAC
325 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
*
19640957 TTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGCAGACG
390 TTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
19641022 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAATCTTGAAGTGTATAAGATT
455 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
19641087 TTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
520 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19641152 AAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
585 AAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
19641217 TAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCAGGCCCCCCGATCGTCG
650 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* *
19641282 G-ACCCCAATGTCGCCGGTCAGGTTTTTCGACGATGCTCCGGCGATGGTGCCCCTG-CGAAGAAA
715 GAACCCCAATGCCGCCGGTCAGG--TTTCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAA
* *
19641345 AATGCAGCACCAGCACAGGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTCGTCCGATCT
777 AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGATCT
*
19641410 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTA
841 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* * *
19641464 AGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * * * **
19641529 GATCGATCGGGTCCACCTCTACGTGCTGCTGATCCTACTACCACAAACCTCGGTCCGGGCCAATC
66 GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATC
* * * * *** *
19641594 TTAGACTGGTAATGAATTCCATATGCCTAAGCCGACCGACGAAACGAGTTTGCGGGTGGGCGGCC
131 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCC
*
19641659 ACTACGTCGAGCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGG
196 ACTACGTCGAGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
19641724 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
261 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
19641789 TAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTCTCGAAACT
326 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* * * * * *
19641854 TTTTACGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTTGATGT
391 TTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
19641919 GATCCTTGTATTTTTGTTGGCATGCACAAATAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
456 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
19641984 TGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
521 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
19642049 AAATCTCAAACGCTCCTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATA
586 AAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
19642114 TAAGGGCCAAGTACCAGCACCCATCGCACATCATCTACGCACACCCCCTCCGGCCCCCCCGATCG
650 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGG-CCCCCCGATCG
* * * *
19642179 TTGGAACCCCAATACCGTCGGTCAGG-TT---C--T-CT--GACGATGGTGCCCCGATGAAGAAA
712 TCGGAACCCCAATGCCGCCGGTCAGGTTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * * *
19642235 AATACAGCGCCAGCACATGCTCGAGCCCAGCGTGTGTTGCCACAACCCTCGATCCGATCCGATCT
777 AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCT
* *
19642300 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAGTCTGTATGCCTA
841 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * *
19642354 AGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACCAAAGGGGTGGGATGCGCAAGCCAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* ** * * * * * *
19642419 GATCGA-CTGGGTCTGCCGAT-CCTGCTGCCGATCCTACTGCCACAACCCTCGATCCAGTCTAAT
66 GATCGATC-GGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGAT
* * * * * * *
19642482 CTTATACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGAGCGGG
130 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
*
19642547 CACTACGTCG-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTA
195 CACTACGTCGAG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
19642611 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCC
259 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
19642676 TTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTTTGAAA
324 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
*
19642741 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGAC
389 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
19642806 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
454 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
19642871 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
519 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
19642936 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTTATAGGGGGCCAA
584 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
** *
19643001 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAG-CCCCCGATCGC
648 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
** * * * **
19643065 CGGAACCCCAATGCCGTTGGTCAGGCTCTCCGACGATGCTCCGATGATGGTTCCCCGACTTAGAA
713 CGGAACCCCAATGCCGCCGGTCAGG-T-TTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * *
19643130 AAATGCAGCACCAGCACATGCTCGAGCCCAGCAGGTGCGGCTGCAACCCTCGGTCCAGTCCGATC
776 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATC
*
19643195 TT-GTACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTAC-GTATGCCTA
840 TTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTA
** * * * * *
19643250 AGTCAACCCACGAAACGAGCGAACGGGTGCTCAGCCGGCCAGAAGGGTGGGATGCTCAAGTC-GA
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-
* * ** *
19643314 GGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGTCTCAACCCTCGGTCCGGTCTGAT
65 GGATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGAT
*
19643379 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
130 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG
* * *
19643444 CGGGCACTACG-CCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGG
194 C---CACTACGTCGAG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
19643508 TTTAGGCACATCTTCATATTTCTGCATGGCAATGTCATTTTTGTGGCTTGTAAATTCATACAATG
255 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
19643573 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
320 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * *
19643638 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGAT
385 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
19643703 AAAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTAGAAGTGTACA
450 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
19643768 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
515 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
19643833 CCTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGG
580 CCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
19643898 CCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATCTGCGCACACCCCCCGGCCCCCCCG
644 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * * *
19643963 ATCG-CTGGAACCCCAATACCGTCGGTTAGG-TT---C--T-CT--GACGATGGTGCCCCGATGA
708 ATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTTCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * *
19644018 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCGTGTGTTGCCGCAACCCTCGGTTCGATCC
772 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCC
* *
19644083 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCTGTATGCCTA
836 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * **
19644142 AGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAAAGGGGTAGGATGCGCAAGCCAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * *
19644207 GATCGA-CTGG---G--TCTA-------CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATC
66 GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATC
* * * * *
19644259 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGACGGGCAGG-
131 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGC
*
19644323 CACTACGTCG-GCTAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
195 CACTACGTCGAGC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** *
19644387 GGCACATCTTCCTATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCC
259 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
19644452 TTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTTTGAAA
324 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* * *
19644517 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCATAAGGAGTTTTGGGCCCAAACTTGGCAGAC
389 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19644582 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGAT
454 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
19644647 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
519 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
19644712 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
584 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
19644777 TATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCG
648 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCG
* **
19644842 TCGG-ACCCCAATGCCACCGGTCAGGTTTTTCGGGGATGCTCCGACGATGGTGCCCCTG-CGAAG
712 TCGGAACCCCAATGCCGCCGGTCAGG--TTTCGACGATGCTCCGACGATGGTGCCCC-GACGAAG
* * *
19644905 AAAAATGCAGCACCAGCACAGGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGA
774 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGA
* *
19644970 TCTTATACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTA
838 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* *
19645027 AGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGG
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * * * *
19645092 GATCGATCGGGTCCACCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCTGGACGGATC
66 GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATC
* * * ** * *
19645157 TTAGACTAGTAATGAATTTTGTATGCCTAAGCCGACCGACGAAACGAGTGGGCGGGCGGGCGGCC
131 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCC
* * *
19645222 ACTACGCCGAGCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGTTTAGG
196 ACTACGTCGAGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
19645287 CACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
261 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
19645352 TAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTCTCGAAACT
326 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* * * * *
19645417 TTTTGCGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGCT-GACG
391 TTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGG-TAGACG
* *
19645481 TGATCCTTGTATTTTTGTTGGCATGCACAAATAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
455 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
19645546 TTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTGT
520 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
19645611 AAAATCTCAAACGCTCCTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAAT
585 AAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
19645676 GTAAGGGCCAAGTACCAGCACCCATCGCACATCAAGCGCGCACACCCCCCCGGTCCCCCGATCAT
649 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGT
* * * * ** ** *
19645741 CAGAACCACAATGCCGCTGGTCAGGTTCTTCGATGACACTCCGGTGATGGTGCCCC-AGCAAAGA
713 CGGAACCCCAATGCCGCCGGTCAGG-T-TTCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGA
** * * * *
19645805 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGATGCTGCAACCCTTC-GCCCGGTCCAA
775 AAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCC-GTCCGA
* *
19645869 TCTTAGACTGCGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
838 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * * *
19645926 AGTCAACCCATGAAATGAGCGTGCAGGTGCTCAGCCAGCCA
1 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
19645967 CAGCGACGGC
Statistics
Matches: 6341, Mismatches: 691, Indels: 287
0.87 0.09 0.04
Matches are distributed among these distances:
874 24 0.00
875 469 0.07
876 4 0.00
877 2 0.00
879 92 0.01
881 2 0.00
882 281 0.04
883 136 0.02
884 492 0.08
885 299 0.05
886 10 0.00
887 10 0.00
888 99 0.02
889 747 0.12
890 336 0.05
891 35 0.01
892 191 0.03
893 270 0.04
894 7 0.00
895 204 0.03
896 659 0.10
897 180 0.03
898 556 0.09
899 206 0.03
900 196 0.03
901 724 0.11
902 79 0.01
903 31 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
GATCGATCGGGTCCGCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCC
ACTACGTCGAGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
TTTTACGGTTTGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAGGTTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
CAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
Found at i:19642327 original size:26 final size:26
Alignment explanation
Indices: 19642298--19642350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19642288 CCGATCCGAT
19642298 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
19642324 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19642350 C
1 C
19642351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19645909 original size:26 final size:26
Alignment explanation
Indices: 19645870--19645922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19645860 CCGGTCCAAT
19645870 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
*
19645896 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
19645922 C
1 C
19645923 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTGTATG
Found at i:19646655 original size:26 final size:26
Alignment explanation
Indices: 19646626--19646678 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19646616 CCGATACAAA
19646626 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
19646652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
19646678 C
1 C
19646679 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:19646668 original size:756 final size:756
Alignment explanation
Indices: 19645217--19646716 Score: 2377
Period size: 756 Copynumber: 2.0 Consensus size: 756
19645207 GGCGGGCGGG
19645217 CGGCCACTACGCCGAGCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGT
1 CGGCCACTACGCCGAGCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGT
* *
19645282 TTAGGCACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
19645347 TCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTCTCG
131 TCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTCG
*
19645412 AAACTTTTTGCGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGCT
196 AAACTTTTTGCGGTTGGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTAGCCCCAAACTTGGCT
* *
19645477 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAATAAATTCAGCTAAAAACTCAAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
19645542 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
326 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
* * *
19645607 TTGTAAAATCTCAAACGCTCCTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGC
391 CTGTAAAATCTCAAACGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGC
* *
19645672 CAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCAAGCGCGCACACCCCCCCGGTCCCCCGA
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGCGCACACACCCCCCCGGTCCCCCGA
* * * *
19645737 TCATCAGAACCACAATGCCGCTGGTCAGGTTCTTCGATGACACTCCGGTGATGGTGCCCCAGCAA
521 TCACCAGAACCACAATGCCGCTGGTCAAGTTCTCCGATGACACTCCGGCGATGGTGCCCCAGCAA
* * * * *
19645802 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGATGCTGCAACCCTTCGCCCGGTCC
586 AGAAAAATGTGGAACCAGCACATGCCCGAGCCAAGCATGTGATGCCGCAACCCTTCGCCCGATAC
* * *
19645867 AATCTTAGACTGCGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
651 AAACTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
19645932 CCCATGAAATGAGCGTGCAGGTGCTCAGCCAGCCACAGCGA
716 CCAACGAAACGAGCGTGCAGGCGCTCAGCCAGCCACAGCGA
* * * *
19645973 CGGCCACTATGCCG-GCCAGAGAGCCGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTTGG
1 CGGCCACTACGCCGAG-CAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGG
19646037 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
19646102 GTCGCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTT
130 GTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTC
* *
19646167 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTCTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
195 GAAACTTTTTGCGGTTGGGGATTTTTTAAAATT-TTTTCGGAAGAAGTTTTAGCCCCAAACTTGG
19646232 -TAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
259 CT-GACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
*
19646296 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
323 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
* * *
19646361 AACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
388 AACCTGTAAAATCTCAAACGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * *
19646426 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGG-CCCC
453 AGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGCGCACACACCCCCCCGGTCCCC
* * **
19646489 CGGATCGCC-GAAACCCCAATGCCG-TCGGTCAAGTTCTCCGATGATGCTCCGGCGATGGTGCCC
518 C-GATCACCAG-AACCACAATGCCGCT-GGTCAAGTTCTCCGATGACACTCCGGCGATGGTGCCC
* * * *
19646552 CGGCGAAGAAAAATGTGGAACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCC-TCGAT
580 CAGCAAAGAAAAATGTGGAACCAGCACATGCCCGAGCCAAGCATGTGATGCCGCAACCCTTCG-C
19646616 CCGATACAAACTTAGACTG-GCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
644 CCGATACAAACTTAGACTGCG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
19646680 TAAGTCAACCAACGAAACGAGCGTGCAGGCGCTCAGC
708 TAAGTCAACCAACGAAACGAGCGTGCAGGCGCTCAGC
19646717 TGACCGGAAG
Statistics
Matches: 681, Mismatches: 55, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
755 12 0.02
756 411 0.60
757 258 0.38
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (756 bp):
CGGCCACTACGCCGAGCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTCG
AAACTTTTTGCGGTTGGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTAGCCCCAAACTTGGCT
GACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
CTGTAAAATCTCAAACGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGCGCACACACCCCCCCGGTCCCCCGA
TCACCAGAACCACAATGCCGCTGGTCAAGTTCTCCGATGACACTCCGGCGATGGTGCCCCAGCAA
AGAAAAATGTGGAACCAGCACATGCCCGAGCCAAGCATGTGATGCCGCAACCCTTCGCCCGATAC
AAACTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCAACGAAACGAGCGTGCAGGCGCTCAGCCAGCCACAGCGA
Found at i:19648102 original size:898 final size:896
Alignment explanation
Indices: 19645977--19648386 Score: 3556
Period size: 903 Copynumber: 2.7 Consensus size: 896
19645967 CAGCGACGGC
* * *
19645977 CACTATGCCGGCCAGAGAGCCGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTTGGTTTAG
1 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGTTTAG
* *
19646042 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGC
65 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
19646107 TTAAGCCTTCACGTGAAGTTTCCTGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGAAAC
130 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* *
19646172 TTTTTGCGGTTTGGGATTTTTTAAAATTCTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGAC
195 TTTTTGCGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
19646237 GTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
259 ATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
19646302 TTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
323 TTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
19646367 TAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
388 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAA
* * *
19646432 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCGGATCGC
452 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGACCCCC-GATCGC
* * *
19646497 CGAAACCCCAATGCCGTCGGTCAAGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
516 CGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGGCGAAGAA
* *
19646562 AAATGTGGAACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGATCCGATACAAAC
581 AAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGATCCGATACAAAC
* *
19646627 TTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAA
646 TTAGACTGGCAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCAA
** * *
19646692 CGAAACGAGCGTGCAGGCGCTCAGCTGACCGGAAGGGCAGGATGCGCCAGCCAGGGATCGGCCGG
711 CGAAACGAGCGTGCAGGCGCTCAGCTGACCAAAAGGGCAGGATGCGCAAGCCAGGGATCGGCCGA
* * * * *
19646757 GTCCCCCTCTACGTGCTACCGATCCTGCTATCGTAACCCTTGGTCTGATCCAATCTTAGATTGGG
776 GTCCCACTCTACGTGCTACCGATCCTACCACCGTAACCCTTGGTCTGATCCAATCTTAGACTGGG
* * *
19646822 AATGAACTCCGTACGCCTAAACCAACTGACGAAACGAGCGGGTGGGCGGGCGGGCGGG
841 AATGAACTCCGTACGCCTAAACCAACCGACGAAACGAGC--GTGGCCGGGCGGCCGGG
*
19646880 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAG
1 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAG
* * * *
19646945 GCACATCTTCATATTTTTGCATGCCAATTCCTTTTTTATTGCTTGTAAATTCATACAATGGTCCC
65 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
19647010 TTAAGCCTTCACGTGACGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAAC
130 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
*
19647075 TTTTAGCGGTTCGGGAATTTTTTAAAATTTTTTCGGGAA-GAGTTTTGGCCCCAAACTTGGTAGA
195 TTTTTGCGGTTCGGG-ATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGA
19647139 CGA-GATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAG
258 C-ATGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAG
* *
19647203 ATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCGATC-GCAAAC
321 ATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG-GCAGCAAAC
* *
19647267 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGTGACGGATAGGGGGC
385 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGC
*
19647332 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGACCCCCGATC
449 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGACCCCCGATC
** ** * * *
19647397 GTTGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGGCAAAG
514 GCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGGCGAAG
* * * * * * *
19647462 AAAAATGCGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCGA
579 AAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGATCCGATACAA
* * * * *
19647527 TCTTAGATTGGGAATGAACTTCGTACGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTTAACC
644 ACTTAGACTGGCAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACC
* * * * *
19647592 CACGAAACGAGCGTGCGGGCGCTCAG-TCGACCAAAAGGGCGGGATGCGCAAGTCGGGGATCGGC
709 AACGAAACGAGCGTGCAGGCGCTCAGCT-GACCAAAAGGGCAGGATGCGCAAGCCAGGGATCGGC
** * **
19647656 CGAGTCCCACTCTACGTGCTGTCGATCCTACCACCGTAACCCTTGGTCTGGTCTGATCTTAGACT
773 CGAGTCCCACTCTACGTGCTACCGATCCTACCACCGTAACCCTTGGTCTGATCCAATCTTAGACT
* * * * *
19647721 GGGAATGCACTCTGTATGCCTAAGCCAACCGACGAAATGAGC-T-GCCGGGCGGCCGGG
838 GGGAATGAACTCCGTACGCCTAAACCAACCGACGAAACGAGCGTGGCCGGGCGGCCGGG
* * * *
19647778 CACTACGTCGGCCAGAGAGACGGGACGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGTTTTAG
1 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG-TTTAG
19647843 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
65 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CC
*
19647908 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAA
129 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * * **
19647973 CTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGGTCCAAACTTGGTAGAC
194 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
19648038 ATGATCCCTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGAT
259 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * * * *
19648103 TTCGTGACCATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTA
323 TTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
19648168 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGACAGGGGGCCAA
388 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GATAGGGGGCCAA
* * *
19648233 TATAGGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCGCCCGATCG
452 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGACC-CCCGATCG
* * ** * *
19648298 CCGGAACCCCAATGTCGTCGGTCAAGTTTTGTGACGATGC-TCTGGTGATGGTGCCCCGACGAAG
515 CCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTTC-GGCGATGGTGCCCCGGCGAAG
* *
19648362 AAAAATACGGCACTAGCACATGCCC
579 AAAAATGCGGCACCAGCACATGCCC
19648387 CAGTGCAACC
Statistics
Matches: 1355, Mismatches: 135, Indels: 37
0.89 0.09 0.02
Matches are distributed among these distances:
897 9 0.01
898 386 0.28
899 88 0.06
900 78 0.06
901 1 0.00
902 322 0.24
903 453 0.33
904 18 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
GTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGACCCCCGATCGCCGGAA
CCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGATCCGATACAAACTTAGA
CTGGCAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAA
CGAGCGTGCAGGCGCTCAGCTGACCAAAAGGGCAGGATGCGCAAGCCAGGGATCGGCCGAGTCCC
ACTCTACGTGCTACCGATCCTACCACCGTAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGA
ACTCCGTACGCCTAAACCAACCGACGAAACGAGCGTGGCCGGGCGGCCGGG
Found at i:19650064 original size:26 final size:26
Alignment explanation
Indices: 19650028--19650080 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19650018 CTGGTCTGAT
19650028 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19650054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19650080 C
1 C
19650081 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19650241 original size:880 final size:877
Alignment explanation
Indices: 19648439--19650949 Score: 3381
Period size: 880 Copynumber: 2.8 Consensus size: 877
19648429 CCTTCGTATG
* *
19648439 CTTAGACTGGGAATGAATTCTGTACGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGG
** * * * * * *
19648504 TGGGTACTAC-ACTGGCCAGAAAGAC-GAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
62 CAGGCACTACGTC-GGCCAGAGAGACAG-GATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGG
* *
19648567 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
125 GTTTAGGCACATCTTCATATTTC----TG-C-ATGCCA-----AT-AC-----CATTCATACAAT
* *
19648632 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATTTTTCACGATTTT
173 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
19648697 TTAAACTTTTCACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGG
238 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
19648762 TAAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCTA-CTAAAAACTCAAAGTGTA
303 TAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTC-AGCTAAAAACTCGAAGTGTA
* * * *
19648826 CAAGATTTTGTGTCCATTTGAAAAAAGTG-CCGCCATTTCAGACACTTTAATGGCTACTGGCAGC
366 CAAGTTTTTGTGACCATTTGAAAAAAGTGTCC-CCATTTAAGACACTTTAATGGCTATTGGCAGC
* *
19648890 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGCTTTGATGAGGGATAGG
430 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGG
19648955 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCCGGCCC
494 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCC
* *
19649020 CCCTGATCGTCGGAACCCTAACGCCGTCGATCAGG--TT---C----TCTGGCGATGGTGCCCCG
557 CCC-GATCGTCGGAACCCCAACGCCGTCGATCAGGTTTTCGGCAATGTCCGGCGATGGTGCCCCG
*
19649076 GTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCG
621 GTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
19649141 GT-TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTGCATACGCCTATG
686 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATACGCCTAGG
* * * *
19649205 TCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCAAGAAGGGCGGGATGTGCAAGCCGGGGA
751 TCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAGCAAGAAGGGCGGGATGCGCAAGCCCGCGA
* * * *
19649270 TCGACCGAGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
816 TCGACCGAGTCCCCCTCTACGTGCTGCCAATCCTACTGCCGCAACCCTCGGTCCGATCCAAC
*
19649332 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
19649397 CACTACGTCGGCCAGAGAGACAGGATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACAGGATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGGGTTTAG
* *
19649462 GCACATCTTCATATTTCTGCATGCCAATACCATT-TTACAATGGTCCCTTAAGCCTTCTCGTGAA
131 GCACATCTTCATATTTCTGCATGCCAATACCATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
19649526 GTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
196 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* ** *
19649591 TTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTT
261 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
19649656 TTGGCATGCTGAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTTGTGACCATTTGAA
326 TTGGCATGC--AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG-TTTTTGTGACCATTTGAA
19649721 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCT
388 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
19649786 CTTTAAGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATC
453 CTTTAAGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
19649851 AGCACCCATCGCATATCATGTGCTCACACCCCCCGGCCCCCTCGATCGTCAGAACCCCAAGGCCG
518 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAACGCCG
** * * *
19649916 TCGATCAGGTTTTCCGGCAATGTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACTAGCAC
582 TCGATCAGGTTTT-CGGCAATGTCCGGCGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCAC
* ** *
19649981 ATGCCCGAGCCTAGCATGTGCTGCCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
646 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * *
19650046 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACG-AACGAGCGTGCGGG
711 TCCGTATGCTTAGACTGGGAATGAACTCCATACGCCTAGGTCAACCCACGAAACGAGCGTGCGAG
* * * * *
19650110 CGCTCAGTCAGCTAGAGGGGTGGGATGCGCAAGCCCGCGATCGATCGAGTCCCCCTCTACGTGCT
776 CGCTCAGCCAGCAAGAAGGGCGGGATGCGCAAGCCCGCGATCGACCGAGTCCCCCTCTACGTGCT
* * ** * *
19650175 GTCGATCCTACTGTTGCAACCCTTGGTCTGATCCAAC
841 GCCAATCCTACTGCCGCAACCCTCGGTCCGATCCAAC
19650212 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
19650277 CACTACGTCGGCCAGAGAGACAGGATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACAGGATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGGGTTTAG
* *
19650342 GCACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGCCTTGTAAATTCATACAACGGTCCC
131 GCACATCTTCATATTTCTGCATG-C----CAA----TA--CC------ATTCATACAATGGTCCC
* *
19650407 TTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAAC
179 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
19650472 GTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGG-CCCAAACTTGATAGACA
244 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
19650536 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTT
309 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG-TTT
* ** * *
19650601 TT-TGACCATTTGAAAAAAATGTCCTTATTTTAGACACTTTAATGGCTATTGGAAGCAAACCTGT
373 TTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGT
*
19650665 AAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGTGCCAA
438 AAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT-TTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
19650729 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCGGCCCCCCCGATCG
501 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCG
* * * * * *
19650794 CCGGAACCCCAATGCCG-CCAGTCAGGTTCTCTGG-ATATGCTCCGACGATGGTGCCCTGGTGAA
565 TCGGAACCCCAACGCCGTCGA-TCAGGTTTTC-GGCA-ATG-TCCGGCGATGGTGCCCCGGTGAA
* * * * *
19650857 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGATGTCGCAACCCTCGGTCCAGTCCG
626 GAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
19650922 ATCTTAGACTGGGAATGAACTCCGTATG
691 ATCTTAGACTGGGAATGAACTCCGTATG
19650950 TCTAAGCCAA
Statistics
Matches: 1444, Mismatches: 130, Indels: 85
0.87 0.08 0.05
Matches are distributed among these distances:
870 38 0.03
871 161 0.11
872 116 0.08
873 83 0.06
874 2 0.00
876 1 0.00
877 1 0.00
878 2 0.00
880 321 0.22
881 67 0.05
883 6 0.00
884 1 0.00
885 5 0.00
889 86 0.06
890 2 0.00
891 3 0.00
893 47 0.03
894 85 0.06
895 155 0.11
896 106 0.07
897 42 0.03
898 114 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
CACTACGTCGGCCAGAGAGACAGGATGCGCAAGACGTGTATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATACCATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAACGCCGTCGA
TCAGGTTTTCGGCAATGTCCGGCGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCATACGCCTAGGTCAACCCACGAAACGAGCGTGCGAGCGCTC
AGCCAGCAAGAAGGGCGGGATGCGCAAGCCCGCGATCGACCGAGTCCCCCTCTACGTGCTGCCAA
TCCTACTGCCGCAACCCTCGGTCCGATCCAAC
Found at i:19651670 original size:26 final size:26
Alignment explanation
Indices: 19651641--19651693 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19651631 CTAATCTGAT
* *
19651641 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19651667 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19651693 C
1 C
19651694 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19652566 original size:26 final size:26
Alignment explanation
Indices: 19652530--19652580 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19652520 CCGGTCGGAT
19652530 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
19652556 CTTAGACTGGGAATGGACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
19652581 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19652980 original size:890 final size:885
Alignment explanation
Indices: 19650903--19653762 Score: 3686
Period size: 890 Copynumber: 3.2 Consensus size: 885
19650893 TGTGATGTCG
* ** * * *
19650903 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAA
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
* * *
19650968 ACGAGCGGGCAGG-CGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
66 ACGAGCGGGC-GGAAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCATGG
* * * * *
19651032 ATCGA-ATGGGTGGTAGCTAGGTTTGGGGACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
130 ATCGATA-GGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
19651096 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
19651161 TTTTATATTTTTCTCGATTTACGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
259 TTTTATATTTTTCTCGATTTATGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
*
19651226 GAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTC
324 GAGTTTTGGTCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTC
* * *
19651291 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACAT
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
19651356 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19651421 AGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
519 A-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * ** *
19651486 CGCACACCCTCCGGCCCCCCGATCGCCGAAACCCCAATGTTGCAGGTCAGGTTCTCTGGCGATGC
583 CGCACACCC-CCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTC--GC---G-
* ** * * * ** * *
19651551 TCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCAAATGCCCAAGCCTAGCAAGTGCT
641 --CGCCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCT
* *
19651616 GCCTCAACCCTCGGTCTAATCTGATCTTAGACTGTGAATGAACTCTGTATGCTTAGATTGGGAAT
704 GCCACAACCCTCGATC---TC-GATCTTAGACTG-GAATGAACTCTGTATGCTTAGA-TGGGAAT
* * * *
19651681 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCTGGCGCTCAGCCGGCCAGAGGGGTG
763 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
* * * * *
19651746 GGATACGTAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCA
828 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTCT-GATCCTGCTGCCA
* * * *
19651805 CAACCCTCGGTCTAGTCTGGTCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
* * * *
19651870 ACGAGCGAGCGGATA-GGCGGGGGGGCACAACGTCGGCCAGAGAGACGGGACTCGCA-AA-CCGT
66 ACGAGCGGGCGGA-AGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA-T-GCACAAGCCAT
* * * *
19651932 GGATTGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATTCCAATGCCATTTTT
128 GGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * *
19651997 ATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTCAAGTTTCAAGGCAAGACGACTC
193 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * * * * *
19652062 ATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCGGAT
258 GTTTTATATTTTTCTCGATTTATGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAA
* * * * * *
19652127 GGAGTTTTGTTCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATTCACAAAAAAATT
323 GGAGTTTTGGTCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATT
* * *
19652192 AACCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCCATTTCAGAC
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGAC
19652257 ACTTTAATGGCTACTGGCAG-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
19652321 TGAGTTTGATGAGGGATAGGGGGCTAATATGAGGGCCAAGTACCAGCACCCATCACGCATCATGT
517 CGAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * *
19652386 GCGCACACCCCCTGGCCGCCCGATCGTTGGAACCCCGATGCCGCCGGTCAGGTTCTC-CG-G-CG
582 GCGCACACCCCC-GGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGCGCCG
* * * *
19652448 ATGGTGCCCCGACGAA-AAAAATGCGGCAGCACCACATGCCTGAGCCCAGCATGTGCTGTCGCAA
646 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAA
* *
19652512 CCCTCGATCCGGTCGGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGGACTCT
711 CCCTCGAT-C--TC-GATCTTAGACT-GGAATGAACTCTGTATGCTTAGA-TGGGAATGAACTCC
* * * *
19652577 GTATTCCTAAGTCAACCCACGAAACGAGGGTGCGGGTGCTCAGTCGGCCAGATGGGCGGGATGCG
770 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCG
* *
19652642 CAAGCCGAGGATCGGCCGGGTCCCCCACTGCATGCTACTGATCCTGCTGCCA
835 CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCT-CTGATCCTGCTGCCA
* * * * * *
19652694 CAATCCTCAATTTGGTCTGATCTTAGACTAGTAATGAAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG-AACTCCATATGCCTAAGCCAACCGACGA
* * * *
19652759 AACGAGCGGGCGGAAGGACGGGCGGGCGCTACG-CTAGCTAGAGAGACGGGATGCACAAGCCATG
65 AACGAGCGGGCGGAAGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCACAAGCCATG
* * * *
19652823 GATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
19652888 TGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
19652953 TTTTATATTTTTCTCGATTTATGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
259 TTTTATATTTTTCTCGATTTATGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
*
19653018 GAGTTTTGGTCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAATTTC
324 GAGTTTTGGTCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTC
* *
19653083 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTATCCCCA-TTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
19653147 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGTGTGTCAGTTCTCA
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19653212 AGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
519 AG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
*
19653277 CGCACACGTCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGAT
583 CGCACAC--CCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTC-TC---G-C
* *
19653342 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG-CTCGAGCCCAGCATGT
640 GCGCC---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGT
*
19653406 GCTGCCACAACCCTC-A----G---TT--A-T-G--T---C-C-G-AT-CTTAGATAAGGAATGA
701 GCTGCCACAACCCTCGATCTCGATCTTAGACTGGAATGAACTCTGTATGCTTAGAT-GGGAATGA
*
19653450 ACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
765 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* * *
19653515 ATGCGCAAGCC-AGGCATCGGCCGGGTCCGCCTCTGCGTGCTGCCGATCCTGCTGCCG
830 ATGCGCAAGCCGAGG-ATCGGCCGGGTCCCCCTCTGCGTGCT-CTGATCCTGCTGCCA
* ** * * * *
19653572 CAACCCTCGACCTGGTCCAATCTTAGACTGGGAATGAACACCATATACCTAAGCCAACCTACGGA
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
* * ** *
19653637 ATGAGTGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGA-GG
66 ACGAGCGGGCGGAAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCC-ATGG
* *
19653701 ATCGATAGGGTGGTAGCTGGTTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
130 ATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
19653763 GCGGTTCGGG
Statistics
Matches: 1713, Mismatches: 208, Indels: 99
0.85 0.10 0.05
Matches are distributed among these distances:
877 135 0.08
878 148 0.09
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
885 1 0.00
887 1 0.00
888 29 0.02
889 273 0.16
890 434 0.25
891 3 0.00
892 43 0.03
893 2 0.00
895 2 0.00
898 2 0.00
900 3 0.00
901 106 0.06
902 424 0.25
903 55 0.03
904 47 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (885 bp):
CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGAAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCATGGA
TCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTATATTTTTCTCGATTTATGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGA
GTTTTGGTCCCAAACTGGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACACCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGCGCCGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTC
GATCTCGATCTTAGACTGGAATGAACTCTGTATGCTTAGATGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
TCGGCCGGGTCCCCCTCTGCGTGCTCTGATCCTGCTGCCA
Found at i:19655305 original size:26 final size:26
Alignment explanation
Indices: 19655276--19655331 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19655266 TGGTCCGGTT
19655276 TTAGACCGGGAATGAACTCCGTATG-C
1 TTAGACCGGGAATGAACTCCGT-TGCC
*
19655302 TTAGACTGGGAATGAACTCCGTTGCC
1 TTAGACCGGGAATGAACTCCGTTGCC
19655328 TTAG
1 TTAG
19655332 TCACCCACGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACCGGGAATGAACTCCGTTGCC
Found at i:19657008 original size:26 final size:26
Alignment explanation
Indices: 19656972--19657024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19656962 TCGGTCTGAT
*
19656972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
19656998 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
19657024 C
1 C
19657025 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:19657888 original size:26 final size:26
Alignment explanation
Indices: 19657859--19657910 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19657849 TCTAGTCCGA
* * *
19657859 TCTTAGACTGGTAGTGAATTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
19657885 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
19657911 GTCTAAGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19659442 original size:26 final size:26
Alignment explanation
Indices: 19659406--19659457 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19659396 CAGTTTGATT
* *
19659406 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
19659432 TTAGACAGGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
19659458 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGC
Found at i:19661570 original size:159 final size:159
Alignment explanation
Indices: 19661176--19661571 Score: 580
Period size: 159 Copynumber: 2.5 Consensus size: 159
19661166 GTGCTGCCGT
* *
19661176 AACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
19661241 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCC
66 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAGCCGAGTCCC
*
19661306 CCTCTACGTGCTGCTGATCCTACTGCAGC
131 CCTCTACGTGCTGCTAATCCTACTGCAGC
* *
19661335 AACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * **
19661400 CGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCTGGATGCATAAGCTGGGGATCAGCCGAGTCCC
66 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAGCCGAGTCCC
* *
19661465 CCTCTACGTGCTG-TCAATCCTGCT-CTCGC
131 CCTCTACGTGCTGCT-AATCCTACTGC-AGC
* * *
19661494 AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAA
1 AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
19661559 CGAGTGGGCGGGC
66 CGAGCGTGCGGGC
19661572 AGGCGGGCAG
Statistics
Matches: 212, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
158 2 0.01
159 210 0.99
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (159 bp):
AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAGCCGAGTCCC
CCTCTACGTGCTGCTAATCCTACTGCAGC
Found at i:19664033 original size:26 final size:26
Alignment explanation
Indices: 19663982--19664034 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19663972 CTGGTCCGAT
* *
19663982 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
19664008 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
19664034 C
1 C
19664035 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:19665098 original size:4 final size:4
Alignment explanation
Indices: 19665089--19665118 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19665079 GACGAAACAA
*
19665089 GCGG GCGG GCGG GCGG GCGG GCGT GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
19665119 ACTATGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.27, G:0.70, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:19665267 original size:882 final size:873
Alignment explanation
Indices: 19661352--19665794 Score: 5205
Period size: 882 Copynumber: 5.0 Consensus size: 873
19661342 GGTCCGGTCC
* *
19661352 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * * * ** ** *
19661417 AGTCGGCCAGAGGGGCTGGATGCATAAGCTGGGGATCAGCCGAGTCCCCCTCTACGTGCTGTCAA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGA
* *
19661482 TCCTGCT-CTCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAG
131 TCCTGCTACT-GCAACC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19661546 CCAACCGACG-AAACGAGTGGGCGGGCAGGCGGGCAGGCACTACGCCGACCAGAGGGACGGGATG
194 CCAACCGACGAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
** * * * *
19661610 CAAAAGTCGTGGATCGATCGGGTGGTAGGTGGGTTCAGGCACATCGTCATATTTCTGCATGCCAA
259 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
19661675 TGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
324 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
19661740 AAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAT
389 AAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA-ATTTTACGGTTCAGGATTTTTTAAAAT
*
19661805 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCA
453 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
19661870 C-AAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
518 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
19661934 ATTTTAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCGT-AAATGCTCTTTAAGAGGG
583 ATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAG-GGG
*
19661998 TGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
646 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
19662063 ACACATCATCTGCGCACA---------CCCCTCGATCGCCAGAACCCCAACGCC-ATCGGTCAGG
711 GCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCTCAATGCCGCT-GGTCAGG
* *
19662118 TTCT------T--T-GGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC-CAGAG
775 TTCTCCGCGATGCTCGGCGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCTC-GAG
19662173 CCCAGCATGTGCTGCTGCAACCCTCGGTCTTGTCTGATCTTAGATTGGGAATGCACT
839 CCCAGCATGTGCTGCTGCAA--C-C---C---T-TGATC------T--G-AT---CT
** *
19662230 CCGTATGCTTAGACTGGGAAAAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
1 --G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * *
19662295 GCTCAGCCGGCGAGAGGGGCGGAACGCACAAGCCGGGGATCGATCGGGTCCCCATCTATGTGTTA
62 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTA
* * ** * * *
19662360 CCGATCCTACTGCCACAACTCTTGGTCTGGTCTGATCTTGGACTTGGAATGAACTCCGTATGCCT
127 CCGATCCTGCTACTGCAAC-CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
19662425 AAGCCAACCGAC-AAAACGAACGGGCAGGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGG
191 AAGCCAACCGACGAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * * *
19662489 ATGCACATA-CTGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
256 ATGCGCA-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* **
19662553 CCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGTTTCACGTGAAGTTTCA
320 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * **
19662618 TGCCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTC-GAGATTTTTT
385 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA-ATTTTACGGTTCAG-GATTTTTT
* * ** * *
19662682 AAAATTTTTTTGAAAAAATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGC
448 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
19662747 ATACACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAGAAAAGTG
513 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * *
19662812 TCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTAAAATGCTTTTTCAG
578 TCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA
* * * *
19662877 GGGGTGTGAGCTCTCCAGATTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACC
642 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * *
19662942 CATCGCACATCATGCGCACACACCCCCCCGTCCCCCCCAATCGCCAGAAGCC-CAGTGCTGCCGG
707 CATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCCGATCGCCGGAA-CCTCAATGCCGCTGG
* *
19663006 TCAGGTTCT-C-CGA---T----GATGGTGCCCCGATGAAGAAAAAT-ATGGCACCAGTACATGC
770 TCAGGTTCTCCGCGATGCTCGGCGATGGTGCCCCGACGAAGAAAAATGA-GGCACCAGCACATGC
* * * * *
19663061 TCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCCGATCC
834 TCGAGCCCAGCATGTGCTGCTGCAACCCTTGATCTGATCT
* * * *
19663101 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *
19663166 AGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGTGTCCCCCTCTGTGTGCTACCGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGA
* * * * *
19663231 TCCTACTA-TCGCAACTCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCCATATGCCCAAG
131 TCCTGCTACT-GCAAC-CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19663295 CCAACCGAC-AAAATGAGCGTGCTGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATA
194 CCAACCGACGAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
19663359 CGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
259 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * * * * *
19663424 TGCCATTTCTATGGCTTGTAAATTCATAGAGTGGTCCCTTAAGCCGTCACGTGAACTTTCACGGC
324 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
19663489 AAGACGACTCATTTTTTATTTTTTACGA-TTTTCAAAACTTTTCCCGGTTCGGGATTTTTTAAAA
389 AAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAAA-TTTT-ACGGTTCAGGATTTTTTAAAA
* * **
19663553 TTCTTTCGGAAGGAGTTTTGACAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
452 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19663618 ACAAAAAAATTCACCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTG-AAAAAGTGTCCC
517 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
** * *
19663682 CATTTCGA-ACACTTTAATGGCTACTGATAGCAAACATGTAAAATCTCAGATGCTCTTTAAGGGA
582 CATTT-GAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-
* * *
19663746 GTGTGAGTTCTCGAGGTTTGATGAGGGGTAAGGGGCCAATATAAGGGCCAAGTACCACCACCCAT
645 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
19663811 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATCGTCGGAA-CTCCAATGTCG-TCGGT
710 CGCACATCATGTGCGCACACCCCCCC-G-CCCCCCCGATCGCCGGAACCT-CAATGCCGCT-GGT
* * * **
19663874 CAGGTTCTCTGGTGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAAT-ACGGCACCAGCACATG
771 CAGGTTCTC-CGCGATGCTC-GGCGATGGTGCCCCGACGAAGAAAAATGA-GGCACCAGCACATG
*
19663938 C-CTGAGCCCAGCATGTGCTGTTGCAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
833 CTC-GAGCCCAGCATGTGCTGCTGC-AA-C-C---CT--T--GA---T---C------TG-A-TC
19664002 T
873 T
* * * * *
19664003 ATATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTTAACCGACGAAACGAGCGTACGGGCGC
1 -GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * *
19664068 TCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCACTGCGTGCTGCC
64 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACC
* * * * * ** * *
19664133 AATCTTGCTACTGCAACCCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCTGTATGTCTAA
129 GATCCTGCTACTGCAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** *
19664198 GCCAACCGACG-AAACGAGCGGGCAGGCGTACGGGCGGGCACTACGCCCGCCAGAGAGACGGGAT
193 GCCAACCGACGAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* ** *
19664262 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTCTGCGTGCCA
258 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
19664327 ATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAG
323 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
19664392 CAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAATTTTGCGGTTCAGGAATTTTTAAAAT
388 CAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAAATTTTACGGTTCAGGATTTTTTAAAAT
* * * *
19664457 TTTTTCGGAAGGGGTTTTAGCCCCAGACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
453 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
19664522 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTCAAAAAAGTGTCCCC
518 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
19664587 ATTTGAGACACTTTAATGGCTACTGGTAG-AAACCTGTAAAATCTCAAATGCTCTTTAAGCGGTG
583 ATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG
* * **
19664651 TGAGTTCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAATTGCCAAGTACCAGCACCCATCGC
648 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
19664716 ACATCATGTGCGCACACCCCCCCGACCCCTCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTC
713 ACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCTCAATGCCGCTGGTCAGGTTC
* *
19664781 TCCAGCGATGCTCCGGCAATGGTGCCACGACGAAGAAAAATGAGGCACCAGCACATGCTCGAGCC
778 TCC-GCGATGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCTCGAGCC
* *
19664846 CAGCATGTCCTGTTGCAACCCTTGATCTGATCT
841 CAGCATGTGCTGCTGCAACCCTTGATCTGATCT
* ** *
19664879 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTAGTGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
19664944 AACCAGCCGGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTACTGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGA
** * * *
19665009 TCCTGCTACTGCAACCATCGGTCTGGTCCAAACTTAGATTGGGAATGAACTCTGTATGCCTAAGC
131 TCCTGCTACTGCAACC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
19665074 CAACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCGTGCGGGCACTATGCCAGCCAGAGAGAC
195 CAACCGACG-AA-AA-CGAGCGGGCAGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGAC
* *
19665139 GGGATGCGCATGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
253 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
19665204 TCCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
318 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
19665269 CATGGCAAGACGACTCGTTTTTTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCAAGATTTT
383 CATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAAA--TTTTACGGTTCAGGATTTT
*
19665333 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAATTTTT-TT
446 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTT
* *
19665397 GGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAA
510 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
19665462 GTGTCCCCATTTCG-GACACTTTAATGGCTACTGGCAGCAAACCTGTAGAATCTCAAATGCTCTT
575 GTGTCCCCATTT-GAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
19665526 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
639 TAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
19665591 CACCCACCGCACATCATGTGCGCACACCCTCCCTGGCCCCCCCAATCGCCGAAACCTC-ATGCCG
703 CACCCATCGCACATCATGTGCGCACACCC-CCC-CGCCCCCCCGATCGCCGGAACCTCAATGCCG
* * *
19665655 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
766 CTGGTCAGGTTCTCCG-CGATGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCA
** * * * * *
19665720 CATGCTCGAGCCCAAAATGTGCTGGC-ACAACCCTTGGTCCGGTCC
829 CATGCTCGAGCCCAGCATGTGCT-GCTGCAACCCTTGATCTGATCT
*
19665765 GATCTTATACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
19665795 TTAGACTGGG
Statistics
Matches: 3062, Mismatches: 393, Indels: 210
0.84 0.11 0.06
Matches are distributed among these distances:
865 5 0.00
866 155 0.05
867 508 0.17
868 3 0.00
869 1 0.00
870 2 0.00
871 1 0.00
873 3 0.00
874 172 0.06
875 3 0.00
876 4 0.00
877 4 0.00
878 71 0.02
879 2 0.00
880 3 0.00
881 12 0.00
882 617 0.20
883 357 0.12
884 41 0.01
885 84 0.03
886 130 0.04
887 21 0.01
888 1 0.00
890 3 0.00
891 2 0.00
892 1 0.00
893 87 0.03
894 6 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 100 0.03
901 8 0.00
902 86 0.03
903 158 0.05
904 396 0.13
905 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGA
TCCTGCTACTGCAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTTTATTTTTCACGATTTTTGAAAATTTTACGGTTCAGGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCTCAATGCCGCTGGTCAGGTTCTCC
GCGATGCTCGGCGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGCA
TGTGCTGCTGCAACCCTTGATCTGATCT
Found at i:19665797 original size:26 final size:26
Alignment explanation
Indices: 19665768--19665820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19665758 CCGGTCCGAT
*
19665768 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19665794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19665820 C
1 C
19665821 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19666495 original size:26 final size:26
Alignment explanation
Indices: 19666466--19666518 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19666456 CCGGTCCTAT
19666466 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19666492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19666518 C
1 C
19666519 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19666566 original size:698 final size:696
Alignment explanation
Indices: 19665187--19667280 Score: 3185
Period size: 698 Copynumber: 3.0 Consensus size: 696
19665177 GTTTAGGCAC
*
19665187 ATCTTCATATTTCTGCATCCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
* *
19665252 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
*
19665317 TACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-TGTGA
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACT-TGA
* *
19665381 TCCTTGTAATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTC
194 TCCTTGT-ATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
19665446 TGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAGA
258 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
19665511 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATA
323 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA-GGATAGGGGGCCAATATA
* * *
19665576 AGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCTCCCTGGCCCCCCCAATCGCC
387 AGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCC-CCC-GG-CCCCCCGATCGCC
*
19665641 GAAACCTC-ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
449 GAAACC-CAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGAC-ATGGTGCCCCGACGAAGAAA
* ** *
19665705 AATGCGGCACCAGCACATGCTCGAGCCCAAAATGTGCTGGCACAACCCTTGGTCCGGTCCGATCT
512 AATGCGGCACCAGCACATGCTCGAGCCCAGAATGTGCTGGTGCAACCCTTGGTCCGGTCCTATCT
* *
19665770 TATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCAT
577 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCAC
* * **
19665835 AAAATGAGTGTGTGGGTACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
642 AAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
*
19665890 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
* *
19665955 GCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
* * * *
19666020 TTCGGTTCGTGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACTTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGGTAGACTTGAT
* *
19666085 CCTTGTATTTTTTTGGCAAGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTG
195 CCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
19666150 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAAT
260 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
19666215 CTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTCG-TGAGAGATAGGGGGCCAATATAAG
325 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG-GATAGGGGGCCAATATAAG
* * *
19666279 GGCCAAGTACCTGCACCCATTGCAGATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGAAAC
389 GGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAAC
* * * *
19666344 CCAATGTCGCCAGTCAGGTTCTCCGACGATGCTTCGACAATGGTGCCCCGGCGAAAAAAAATGCG
454 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGAC-ATGGTGCCCCGACGAAGAAAAATGCG
* *
19666409 GCACCAGCACATGCTTGAGCCCAGCATGTGCTGGTGCAACCCTTGGTCCGGTCCTATCTTAGACT
518 GCACCAGCACATGCTCGAGCCCAGAATGTGCTGGTGCAACCCTTGGTCCGGTCCTATCTTAGACT
19666474 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACG
583 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACG
* *
19666539 AGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGG
648 AGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *
19666588 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
* *
19666653 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
** * ** *
19666718 GGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTAATAGACGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCAAACTTGGTAGACTTGAT
* *
19666783 CCTTGTATTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
195 CCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
19666848 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
260 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
19666913 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCACTATAAG
325 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA-GGATAGGGGGCCAATATAAG
* *
19666978 GGCCAAGTACCAGTACCCATCGC-GCATCATGTGCGCACACCCCTCGGCCCGCCCGATCGCCGGA
389 GGCCAAGTACCAGCACCCATCGCAG-ATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCC-GA
* * * *
19667042 ACCCCAATGCCGCCGGTTAAGTTCT-C--CGA----T-G--ATGGTGCCCCGATGAAGAAAAATG
451 AACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACATGGTGCCCCGACGAAGAAAAATG
* * * * *
19667097 CGGCACCAGCACATGCCCGAGCCCAGTATGTGCT-GTCGCAACCCTTGGACCGGT-ATGATCTTG
516 CGGCACCAGCACATGCTCGAGCCCAGAATGTGCTGGT-GCAACCCTTGGTCCGGTCCT-ATCTTA
* * * * * *
19667160 GACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCTTAAGTCAACGCACGA
579 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAA
* * * *
19667225 AACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGAGGGATGCGCAAGCCGGGG
644 AACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
19667278 ATC
1 ATC
19667281 GACCGGGTCC
Statistics
Matches: 1279, Mismatches: 100, Indels: 37
0.90 0.07 0.03
Matches are distributed among these distances:
689 3 0.00
690 182 0.14
693 1 0.00
694 1 0.00
697 1 0.00
698 582 0.46
699 70 0.05
700 15 0.01
701 82 0.06
702 155 0.12
703 186 0.15
704 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (696 bp):
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACTTGATC
CTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAACCC
AATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCTCGAGCCCAGAATGTGCTGGTGCAACCCTTGGTCCGGTCCTATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGC
GTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
Found at i:19667194 original size:26 final size:26
Alignment explanation
Indices: 19667160--19667211 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19667150 TATGATCTTG
* *
19667160 GACTGGGAATGAACTCCGTATGCTTA
1 GACTAGGAATGAACTCCGTACGCTTA
19667186 GACTAGGAATGAACTCCGTACGCTTA
1 GACTAGGAATGAACTCCGTACGCTTA
19667212 AGTCAACGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
GACTAGGAATGAACTCCGTACGCTTA
Found at i:19668631 original size:905 final size:896
Alignment explanation
Indices: 19666588--19669012 Score: 3116
Period size: 905 Copynumber: 2.7 Consensus size: 896
19666578 TAAGTCGGGG
* *
19666588 ATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTA
1 ATCTTCATATTTCTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
19666652 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTT
66 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTCTATTTTTCATGATTTTTGAAACTTT
* * **
19666717 TGGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTAATAGACGTGA
130 TGACGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
19666782 TCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
194 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
19666846 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
259 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
19666911 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCACTATA
324 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA-TAT-
* * * *
19666976 AGGGCCAAGTACCAG-TACCCATCGCGCATCATGTGCGCACACCCCTCGGCCCGCCCGATCGCCG
387 AGGGCC-AGTACCAGCT-CCCATCGCACATCATGTGCGTACACCCCCCGGCCC-CCCGATCGTCG
* * ** *
19667040 GAACCCC-A-A-TGCCG-CCGG-T-T-AAGT-T-CTCCGATGATGGTGCCCCGATGAAGAAAAAT
449 GAACCCCAATACTGCGGTCAGGTTCTCCGGTGTGCTCCGATGATGGTGCCCCGGTGAAGAAAAAT
* * ** *
19667096 GCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTG-TCGCAACCCTT-GGACCGGTATGATCTT
514 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTTCGG-TTGGTCTGATCTT
* *
19667159 GGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCTTAAGTCAACGCACG
577 AGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACGCACG
* ** *
19667224 AAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGACCGGGT
642 AAACGAGCGTACGGGCGCTCAACCAGCCAGAGGGGAGAGATGCGCAAGCCGGGGATCGACCGGGT
* *
19667289 CCCCCTCTGCGTCTTGCCGATCCTGCTGCCACAACCCTCTGTCCGATCAGATCTTAGACTGGGAA
707 CCCCCTCTGCGTCTTACCGATCCTGCTGCCACAACCCTCAGTCCGATCAGATCTTAGACTGGGAA
* * * * * * *
19667354 TGAATTTCGTATGCGTAAGCCAACCAACGAAATGGGTGGGTGGGCGGGCGGGCGAGCACTACGTC
772 TGAACTTCGTATGCCTAAGCCAACCAACGAAACGGGCGGCTGGGCGGGCGGGCGAGCACTAAGCC
* * *
19667419 GGCCAGATAGGCAGGATGTGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAAGCAC
837 GACCAGATAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCAC
* *
19667479 ATCTTCATATTT-TTACGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
1 ATCTTCATATTTCTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
19667543 AGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTATATTTTTCATGATTTTTGAAACTTC
66 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCATGATTTTTGAAACTT-
* ** ** * *
19667608 TTGA-GGTTTGACATTTTTAAAATTTTTTTTGATGGAGTTTTGGCCCCAAACTTGGTAGACATGA
129 TTGACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
19667672 TCCTTGTATTTGTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
194 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
19667737 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
259 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19667802 ATCTAAAATGGTCTTTCAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
324 ATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-ATAT
*
19667867 GAGGGCCGAGTACCAGCTCCCATCGCACATCATGTGCGTACACCCCCCAG-CCCCCGATCGTCGG
387 -AGGGCC-AGTACCAGCTCCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCGATCGTCGG
19667931 AACCCCAATACTGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAA
450 AACCCCAATACTG-CGGTCAGGTTCTCCGGTG-TGCTCCGATGATGGTGCCCCGGTGAAGAAAAA
* *
19667996 TATGGCACCAGCACATGCCCGAGCCCAGCATGTTG-AGCTGC-ACCCTTCGGTTGGTCTGATCTT
513 TGTGGCACCAGCACATGCCCGAGCCCAGCATG-TGCTGCTGCAACCCTTCGGTTGGTCTGATCTT
* * *
19668059 AAAACTGGGAATGAACTCCGTATGCTTAGAC-CGAGAATGAACTCCGTATGCCTAAGTCAAC-CT
577 -AGACTGGGAATGAACTCCGTATGCTTAGACTAG-GAATGAACTCCGTACGCCTAAGTCAACGC-
* * ** ***
19668122 ATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCA-AGATGCGTGAGCCGGGGATCGGTT
639 ACGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGGGG-AGAGATGCGCAAGCCGGGGATCGACC
* * * *
19668186 GGGTCCCCTTCTGCGTGC-TACCTGATCAC-GCTGCCTCAACCCTCAGT-TGGTCTA-ATCTTAG
703 GGGTCCCCCTCTGCGT-CTTACC-GATC-CTGCTGCCACAACCCTCAGTCCGATC-AGATCTTAG
* ** *
19668247 ACTGGGAATGAACCTT-GTATGCCTAAGCCATTCGGACGAAAACCGAGCGCGGCTGGGCGGG-TG
764 ACTGGGAATGAA-CTTCGTATGCCTAAGCCA-ACCAACG-AAA-CG-G-GCGGCTGGGCGGGCGG
* *
19668310 G-G-GCACTAAGCCGACCATA-AGGGACCGGAT-CGCAAGCCGTGGATCGTATAGGGTGGTAGGT
823 GCGAGCACTAAGCCGACCAGATA-GG-CAGGATGCGCAAGCCGTGGATCG-ATAGGGTGGTAGGT
* *
19668371 GGGTTTAGGCGC
885 GGGTTTAAGCAC
* * *
19668383 CTCTTCATATTTCTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
1 ATCTTCATATTTCTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
19668448 AGCCTTCACGTGAAGTTTCATGGCAAAGACGACTCGTTTCTATTTTTCACGATTTTTGAAACTTT
66 AGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTCTATTTTTCATGATTTTTGAAACTTT
*
19668513 TTACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
130 TGACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19668578 CCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGT
195 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19668643 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
19668708 TCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAATAGGGGGCC----A-
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG-ATAGGGGGCCATATAG
* *
19668768 ----AGTACCAGCACCCATCGCACATCATGTGCATACACCCCCCGGCCCCCTCGATCGTCGGAAC
389 GGCCAGTACCAGCTCCCATCGCACATCATGTGCGTACACCCCCCGGCCCCC-CGATCGTCGGAAC
* * * * * **
19668829 CTCAATGCTACCGGTTAGGTTCTCCGACGATGCTCCGACGATACTCTGACGATGGTGCCTTGGTG
453 CCCAATACT-GCGGTCAGGTTCTCCG--G-TG-T--G-C--T-C-C-GATGATGGTGCCCCGGTG
* * * *
19668894 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCC-TCGGTCTGAT
505 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTCGGT-TGGT
*
19668958 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
569 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
19669013 ACTGTCAACC
Statistics
Matches: 1341, Mismatches: 133, Indels: 105
0.85 0.08 0.07
Matches are distributed among these distances:
890 69 0.05
891 258 0.19
892 91 0.07
893 43 0.03
894 6 0.00
895 37 0.03
896 1 0.00
897 2 0.00
898 5 0.00
899 1 0.00
900 20 0.01
901 221 0.16
902 33 0.02
903 35 0.03
904 76 0.06
905 303 0.23
906 125 0.09
907 15 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (896 bp):
ATCTTCATATTTCTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCTATTTTTCATGATTTTTGAAACTTTT
GACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCATATAGGG
CCAGTACCAGCTCCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCGATCGTCGGAACCCC
AATACTGCGGTCAGGTTCTCCGGTGTGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTCGGTTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACGCACGAAACGAGCG
TACGGGCGCTCAACCAGCCAGAGGGGAGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
CGTCTTACCGATCCTGCTGCCACAACCCTCAGTCCGATCAGATCTTAGACTGGGAATGAACTTCG
TATGCCTAAGCCAACCAACGAAACGGGCGGCTGGGCGGGCGGGCGAGCACTAAGCCGACCAGATA
GGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCAC
Found at i:19668992 original size:26 final size:26
Alignment explanation
Indices: 19668963--19669012 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19668953 CTGATCCGAT
*
19668963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19668989 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19669013 ACTGTCAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19670013 original size:26 final size:26
Alignment explanation
Indices: 19669977--19670029 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19669967 CTGGTCCAAT
19669977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19670003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19670029 C
1 C
19670030 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19670879 original size:26 final size:26
Alignment explanation
Indices: 19670843--19670895 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19670833 CTGGTCCAAT
19670843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19670869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19670895 C
1 C
19670896 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19672375 original size:26 final size:26
Alignment explanation
Indices: 19672339--19672391 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19672329 CTGGTCCGAT
19672339 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19672365 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19672391 C
1 C
19672392 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19672509 original size:185 final size:185
Alignment explanation
Indices: 19672135--19672550 Score: 550
Period size: 185 Copynumber: 2.3 Consensus size: 185
19672125 GTGCTGTCGT
* * * * *
19672135 AACCCTCGGTCCGGTCTGATCTTAAACT-AGAATGAACTTCGTATGCTTAGACTGGGAATGAGCT
1 AACCCTCGGTCAGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
19672199 CCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGATGGGCGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * ** * * *
19672264 CGTATGTCAGGGATCGATCGGGTCCCTCTCTGTGTGCTGCCGATCTTGCTACCGC
131 CGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCAC
* * * *
19672319 AACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCAGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
19672384 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * *
19672449 CGCAAGCC-GAGGATTGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCAC
131 CGCAAGCCAG-GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCAC
19672504 AACCCTCGGTCCAGG-CCGATCTTAAACTGGGAATGAACTCCGTATGC
1 AACCCTCGGT-CAGGTCCGATCTTAAACTGGGAATGAACTCCGTATGC
19672551 CTAAGCCAAC
Statistics
Matches: 199, Mismatches: 30, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
184 25 0.13
185 171 0.86
186 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (185 bp):
AACCCTCGGTCAGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCAC
Found at i:19673862 original size:26 final size:26
Alignment explanation
Indices: 19673826--19673878 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19673816 TCGGTTCGAT
19673826 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
19673852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19673878 C
1 C
19673879 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19673927 original size:583 final size:583
Alignment explanation
Indices: 19672796--19673914 Score: 1678
Period size: 583 Copynumber: 1.9 Consensus size: 583
19672786 ACTTTTTGCA
* * * *
19672796 GTTCGGGATTTTTTAAAATTTTTTTTGGAAGGATTTTTTGCCCCAAACTTGGTAAACGTGATCCT
1 GTTCGGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAAACGTGATCCT
19672861 TGTATTTTTTTCGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGAC
66 TGTATTTTTTTCGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGAC
*
19672926 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGTCAGCAAACCTGTAAAATCT
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
19672991 AAAATGCTCTTTAAGGGAATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGG
196 AAAATGCTCTTTAAGGGAATGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAAGG
* * * * *
19673056 TCAAGTACCAGCATCCATCGTACATCATGTGCGCATACCCCCCTGGCCCCACCGATCGCAGAACC
261 CCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCACCGATCGCAGAACC
** * * * *
19673121 TTAATGCCGCCGGTAAGGTTCTCCAGCGATGCTCTGACGATGATGCCCCGAGGAAGAAATATACG
326 CCAATGCCGCCGGTAAGGTTCTCCAGCAATGCTCCGACGATGATGCCCCGACGAAGAAAAATACG
* *
19673186 GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAAACCTCAGTCTGATCCGATCTTAGACT
391 GCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAAACCTCAGTCTGATCCGATCTTAGACT
* * * * *
19673251 GGGAATGAACTTCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
456 GGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACGAAACA
* *
19673316 AGTGTGCGGGTGCTCAATCGGCCAGAGGGGGGGAATGCACGAGCCGGGGATCGGTCTAGTCTG
521 AGCGTGCAGGTGCTCAATCGGCCAGAGGGGGGGAATGCACGAGCCGGGGATCGGTCTAGTCTG
* *
19673379 GTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATCCT
1 GTTCGGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAAACGTGATCCT
* *
19673443 TGTATTTTTGTT-GGCATGCACAAAAAAATTT-AGCTAAAAACTTGAAGTGTACAAGATTTTGTG
66 TGTATTTTT-TTCGGCATGCAC-AAAAAATTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTG
*
19673506 ACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
19673571 CTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCCAGGTTTGATGAGGGATA-GGGGCCAATATAAG
194 CTAAAATGCTCTTTAAGGGAATGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAA
*
19673634 GGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCTCGGCCACC-CCGATCATC
259 GGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCT-GGCC-CCACCGATC-GC
* * * *
19673698 GGAACCCCAATGCCGCCGGTTAGGTTC-CCTGGCAATGCTCCGACGATGGTGCCCCGACGAAGAA
320 AGAACCCCAATGCCGCCGGTAAGGTTCTCC-AGCAATGCTCCGACGATGATGCCCCGACGAAGAA
** * ** * *
19673762 AAATACGGCACCAGCACATGCCTGAGCCAAGCATGTGCTGCCGCAACCCTTGGT-TCGGTTCGAT
384 AAATACGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAAACCTCAGTCT-GATCCGAT
*
19673826 CTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACAC
448 CTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACAC
*
19673891 ACGAAACGAGCGTGCAGGTGCTCA
513 ACGAAACAAGCGTGCAGGTGCTCA
19673915 GCTGGGCAGA
Statistics
Matches: 480, Mismatches: 48, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
580 51 0.11
581 31 0.06
582 182 0.38
583 216 0.45
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (583 bp):
GTTCGGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAAACGTGATCCT
TGTATTTTTTTCGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
AAAATGCTCTTTAAGGGAATGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAAGG
CCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCACCGATCGCAGAACC
CCAATGCCGCCGGTAAGGTTCTCCAGCAATGCTCCGACGATGATGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAAACCTCAGTCTGATCCGATCTTAGACT
GGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACGAAACA
AGCGTGCAGGTGCTCAATCGGCCAGAGGGGGGGAATGCACGAGCCGGGGATCGGTCTAGTCTG
Found at i:19674753 original size:26 final size:26
Alignment explanation
Indices: 19674717--19674769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19674707 CTGGTCCAAT
*
19674717 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19674743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19674769 C
1 C
19674770 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19675424 original size:896 final size:898
Alignment explanation
Indices: 19673378--19677451 Score: 5227
Period size: 900 Copynumber: 4.6 Consensus size: 898
19673368 GGTCTAGTCT
* *
19673378 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
19673443 TGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19673508 CATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
131 CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
19673573 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATA-GGGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
19673636 CCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCTCGGCCACCCCGATCATCGGA
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCC-CC-GGGCC-CCCCGATCGTCGGA
* * * *
19673701 ACCCCAATGCCGCCGGTTAGGTTC-CCTGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
323 ACCCCAATGCTGCCGGTCAGGTTCACC-GGCGATGCTCAGACGATGGTGCCCCGACGAAGAAAAA
* * * * * *
19673765 TACGGCACCAGCACATGCCTGAGCCAAGCATGTGCTGCCGCAACCCTTGGTTC-GGTTCGATCTT
387 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTT
* * *
19673829 AGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACG
452 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
19673894 AAACGAGCGTGCAGGTGCTCAGCTGGGCAGA-GGGCTGGCATACGCAAGCCAGAGATC-AGCCGG
517 AAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCAGGGATCGA-CCGG
* * * * *
19673957 GTCCCCCTCTGCGTGCTGCCAATCCTGCTATCACAACCCTC-GATCCCGTCCGATCTTAGACTGG
580 GTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAG-TCCGGTCTGATCTTAGACTGG
* * *
19674021 GAATGAACTCCATATGCCTAAGCCAACCGAC--AA--AA--CGAGCGGGCGGGCACTACGTCGGC
644 GAATGAACTCCATACGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGGGCACTACGCCGGC
* * * *
19674080 CAGAGAGAAGGGATGCGCAAGCCGTAGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCAT
709 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
19674145 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA-CCTTCAA
774 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* ** *
19674209 GTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
839 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
** * *
19674269 GGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
19674334 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGAC
66 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
19674399 CATTTGAAAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATC
131 CATTT-AAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
19674463 TCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAAGATAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
19674528 GCCAAGTACCAGCACCCATCTCACATCGTGTGCGAACATCCCACCGGGCCCCTCGATCGTCGGAA
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGAACA-CCCCCCGGGCCCCCCGATCGTCGGAA
* * *
19674593 CCCCAATGCTACCGGTCAGGTTCACCGACGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATA
324 CCCCAATGCTGCCGGTCAGGTTCACCGGCGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATG
* *
19674658 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG-CCTGGTCCAATCTTAG
389 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTTAG
* * *
19674722 ACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACTCACGAA
454 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * * * *
19674787 ACGAGCGTGCAGGCACTCATCCCGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGATCAGGTCT
519 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCC
* * * * * * *
19674852 TCTTCTACATGCTGTCGATCCTACTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATG
584 CCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
* * * * * *
19674917 AACTACGTATGCCAAAGCCAATCGACGAAACG-A-GCGGGCGGGCGGGCACTACACCGGCCAGAG
649 AACTCCATACGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
*
19674980 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
714 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * * *
19675045 TGCGTGCGAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAG
779 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
19675110 GTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAAATTTCAAAACTTTTTAC
844 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * *
19675165 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
19675230 TGTATTTTTTTTAGCATGCACAAACAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGAC
66 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19675295 CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCT
131 CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * **
19675360 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGCTGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
19675425 CCAAGTACCAGCACCCATCGTACATCATGTGC--ACACCCCTC-GGCCCCCCCATCGTTGAAACC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCGGGCCCCCCGATCGTCGGAACC
** * * ** *
19675487 CCAATG-TCGCCGACCAAGTTCTCCGATGATGCTCCAG-TGATGGTGCCCCGACGAAGAAAAATG
326 CCAATGCT-GCCGGTCAGGTTCACCGGCGATGCT-CAGACGATGGTGCCCCGACGAAGAAAAATG
** * * ** * * * *
19675550 CGATAGCAGCACATGCCCAAGCCCAGCATGTGCTAACGCAACCCTCGGTCC-CGTACAATCATAG
389 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTTAG
* * *
19675614 ACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAA
454 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
19675679 ACGAACGTGCAGGCGCTCAGCTGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTCC
519 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCC
* * * * * * * *
19675744 CCCTCTGCGTGCTACCGATCTTGCTACCATAACCTTCAGTCTGGTCTGATCTTATACTAGGAATG
584 CCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
* * * *
19675809 AACTCCATACGCCGAAGCCAACCGACGAAACGAACGGGTGGGCGGTGGGGTGGGCACTACGCTGG
649 AACTCCATACGCCTAAGCCAACCGACGAAACGAA--GGCGGGC----GGGCGGGCACTACGCCGG
* *
19675874 CCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCA
708 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
19675939 TATTTCTGCATGCCAATTCCTTTTTTATGGCTTGTAAGA-TCATACAATGGTCCCTTAAGCCTTC
773 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA-ATTCATACAATGGTCCCTTAAGCCTTC
* * * ** **
19676003 ACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTT
837 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * * *
19676065 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCTCTAAACATGGTAGACGTGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
** * *
19676130 TGTATTTTTGCTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19676195 CATTT--GAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
131 CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
19676258 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
19676323 CCAAGTACCAGCACCCATCGCACATCATGTGC-ACACACCCCCCGGG-CCCCTGATCGTCGGAAC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGA-ACACCCCCCGGGCCCCCCGATCGTCGGAAC
* * ** * * * * *
19676386 CCCAATGCCGCAGGTCAGGTTCTTCGGTGATGTTCCGACGATGGTGCCTCGACGAAGAAAAATGT
325 CCCAATGCTGCCGGTCAGGTTCACCGGCGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGC
* ** * * * *
19676451 GGCACTAGCACATGTTCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCT-TTCTGATCTTAGA
390 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTTAGA
* * * **
19676515 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCATAAGTTAACCCATTAAA
455 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
19676580 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGCGCGAGATGCGTAAGCCGGGGATCGGCCGGGTCCC
520 CGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCC
* * * * * ** *
19676645 CCTCTATGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCAATCTGATATTAGACTGGGAATGA
585 CCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGA
* * * * * *
19676710 ACTTCGTACGCCTAAGCCAACCGACGAAGCGAGCGGGCAGGCGGGCGGGCGGGAACTACGTCGGG
650 ACTCCATACGCCTAAGCCAACCGACGAA---A-C--GAAGGCGGGCGGGCGGGCACTACGCCGGC
* *
19676775 CAGAGTGACGGGATGCGCAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCATATCTTCAT
709 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
**** * *
19676839 ATTTCTACGTGCCAATGCCACCGATCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
774 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
19676904 GTGAAGTTTCAAGGGAAGACGACTCGTGTTCTATTTTTCACGATTTTCAAAACTTTTTAC
839 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * * *
19676964 GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCCAAAGTTGGT--A---GA--CT
1 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
19677022 T-TA-----TTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAG
66 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * **
19677081 CATTTGAAAAAAGTGTCCCCATTTTCAGACACCTTAATGGCTACTGGCAGCAAACAAGTAAAATC
131 CATTTAAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
19677146 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAGGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
19677211 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGATC
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCGGGCCCCCCGATCGTCGGAAC
* * * *
19677276 CCCAATG-TCGTCGGTCTGGTTCTA-CGGCGATGCTCTGACGATGGTGCCCCGATGAAGAAAAAT
325 CCCAATGCT-GCCGGTCAGGTTC-ACCGGCGATGCTCAGACGATGGTGCCCCGACGAAGAAAAAT
** * * *
19677339 GCATCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTAC-GGTCCGATCTTA
388 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTTA
* *
19677403 GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGC
453 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
19677452 TTAGACTGGG
Statistics
Matches: 2755, Mismatches: 379, Indels: 99
0.85 0.12 0.03
Matches are distributed among these distances:
886 54 0.02
888 12 0.00
889 146 0.05
890 163 0.06
891 492 0.18
892 359 0.13
893 62 0.02
894 9 0.00
895 140 0.05
896 324 0.12
897 1 0.00
898 147 0.05
899 178 0.06
900 655 0.24
901 3 0.00
903 1 0.00
904 7 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCGGGCCCCCCGATCGTCGGAACC
CCAATGCTGCCGGTCAGGTTCACCGGCGATGCTCAGACGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCC
CTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCCATACGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
Found at i:19675641 original size:26 final size:26
Alignment explanation
Indices: 19675611--19675661 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19675601 CGTACAATCA
*
19675611 TAGACTGGCAATGAACTCCGTATGCT
1 TAGACTGGCAATGAACTCCATATGCT
*
19675637 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGCAATGAACTCCATATGC
19675662 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCATATGCT
Found at i:19676545 original size:26 final size:26
Alignment explanation
Indices: 19676509--19676561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19676499 CCTTTCTGAT
*
19676509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19676535 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19676561 C
1 C
19676562 ATAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19677428 original size:26 final size:26
Alignment explanation
Indices: 19677399--19677477 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19677389 ACGGTCCGAT
19677399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19677425 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19677451 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19677477 C
1 C
19677478 CTAAGACAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19678216 original size:26 final size:26
Alignment explanation
Indices: 19678176--19678228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19678166 TCGGTCTGAT
*
19678176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
19678202 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
19678228 C
1 C
19678229 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:19679052 original size:26 final size:26
Alignment explanation
Indices: 19679023--19679075 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19679013 CCAGTCCGAT
19679023 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19679049 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19679075 C
1 C
19679076 CTGAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19680302 original size:872 final size:872
Alignment explanation
Indices: 19677632--19688608 Score: 10599
Period size: 880 Copynumber: 12.5 Consensus size: 872
19677622 CGCCAGTCTA
* * *
19677632 GCTTCTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTG
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
19677697 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAATGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
19677762 GTTTTTGCCCCAAAGTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
* * *
19677827 CTAAAAACTCAAAGAGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
19677892 TAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTATCAGGGGGTGTGAGTTCTCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
19677957 GTTTGATGAGGGATAAGAGGCTAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCG
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * ** *
19678022 CACACCCCCTGGCCCCCCCGATCGTCGGAACGCCAATGCCACCAGTCAGGTTCTCCGACGATGCT
390 CACACCCCC-GG--CCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATGCT
* * * *
19678087 CCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCAAGCATGTGCTA
452 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
*
19678152 CCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATG
517 CCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GG---G-A------ATG---A-ACT--C--T-
** *
19678217 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGG
562 AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGG
* * * ** **
19678282 GATGCACAATCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
622 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCT
* * *
19678347 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG
687 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* *** * *
19678412 GCGGGCGGGCGGCCAGGCACTACGTCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGG
752 GAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
19678477 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATG
817 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG-ATGCCAATGCCATTTTTATG
*
19678534 GCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
19678599 TTCTATTTTTCACGATCTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
*
19678664 GTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCA-AAAAAATTCAGC
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
*
19678728 TAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTATTTCAGACACTT
196 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTT
19678793 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * * *
19678858 GTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATTGCACATCATGTTCT
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
****** * ** * * ** ** * *
19678923 C-C-GGTGATG-CTCCGA-CGAT-GGTGCCCCGAT---G-AAGAAAAATGTGT-C-ACCA-G---
390 CACACCCCCGGCCCCCGATCG-TCGGAACCCCAATACCGTCAGTCAGGT-TATCCGACGATGCTC
*** * * * * * *
19678973 C-AC-A---TG-CCCGA-G-CCCAACATG-TGCTGCC-GCA-A-CCCTCG-GTCCAGTCCGATCT
453 CGACGATGGTGCCCCGACGAAGAAAAATGCGGC-ACCAGCACATGCC-CGAGCCCAG--C-ATGT
*** * * **** * ** *
19679025 TAGACTGGGAATGAAC--TCC-GTATG--CTTAGACTGGGAATGAACTC-CGTATGCCTGAGTCA
513 GCTAC-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTAATATGCCTAAGTCA
* * * * * * *
19679084 ACGCACAAAATAAGCGTACGGCCGCTCAGCCAGTC-GAAGGGGTGGGATGTGCAAGCCGGCCGGA
577 ACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAG-AGGGGCGGGATGCGCAAGCCGG--GGA
* * * * *
19679148 GGGACGGGATGTGCAAGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTG-TCGCAACCGTCAT
639 ---TC--GA----C----CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCAG
* * * *
19679212 TTCGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGAAACG-A-GCA-
690 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGAG
* ** * *
19679274 GGCGAGCGGGTGGGCACTGTGTCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGTGTG
755 GGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
19679339 GTAGGTGGGTTTAGGCACATCTTTATATTTCT-ATGTACCAATGCCATTTTTACG
820 GTAGGTGGGTTTAGGCACATCTTTATATTTCTGATG--CCAATGCCATTTTTATG
* * *
19679393 GCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGATGACTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * *
19679458 TTTTATTTTTCTCGATTTTTAAAACTTTTTGCGATTCCAGATTTTTTAAAATTTTTTTGGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
19679523 -TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAG
* * * **
19679587 CTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCTATTTTTGACACTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
19679652 TAATGGCTACTGGCAGC-AACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
19679716 GTTGGATGAGGGATAGGGGGCCAATATAACGGCCAAGTAGCC-GCACCCATCACACATCATGTGC
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGC
* *
19679780 GCACACCCCCGGCCCCCTGATCG-CTGGAACCCCAACT-CCGTCAGTCAGGTTCTCCGATGATGC
389 GCACACCCCCGGCCCCC-GATCGTC-GGAACCCCAA-TACCGTCAGTCAGGTTATCCGACGATGC
* * * *
19679843 TCCGACGATGGTTCCCCGACGAAGAAAAATGTGGTA-CAGCTCATGCCCGAGCCCAGCATGTGCT
451 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
19679907 ATCGCAACCCTCGGCCCGGTCTGATCTTAGACTGGGAATGAACTCT-ATATGCCTAAGTCAACCC
516 ACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTAATATGCCTAAGTCAACCC
* ** *
19679971 ACAAAACAAGCGTGCAGAAGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
581 ACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* * **
19680036 GGTCCCCCTCTGCGTGCTACCGATCCTGCTGCTGTAACCCTCAGTCCGGTCTAATCTTAGACTGG
646 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGG
* * * *
19680101 GAATGAACTCCATATGCCTAAGGCAACCAACGAAACGAACGGGAGGGTGGGCGGGTGGGCACTAC
711 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GGAGGGCGGGCGGGTGGGCACTAC
*
19680166 GTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
775 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
19680231 CTTCATATTTCTGCATGCCAATGCCATTTTTATG
840 CTTTATATTTCTG-ATGCCAATGCCATTTTTATG
* *
19680265 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
19680330 TACTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
19680395 TTTTTTGCCCTAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
* *
19680460 TAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTC-GAACACTT
196 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTT
* * *
19680524 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAATTCTTGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
19680589 GTTTGATGAGGGATAGGGGGCCAATATAATGGG-TAAGTACCTGCACCCATTGCAGATCATGTGC
325 GTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
19680653 GTACACCCCCCGACCCCCCAGTCGTCGGAACCTCAATACCGTC-GCTCAGGTTATCC-AGCGATG
389 GCACA-CCCCCGGCCCCCGA-TCGTCGGAACCCCAATACCGTCAG-TCAGGTTATCCGA-CGATG
* * * **
19680716 GTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATTTCCGAGCCCAGCATGTGC
450 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** *
19680781 TACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTGAACC
515 TACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTAATATGCCTAAGTCAACC
* * * ** * *
19680845 CACAAAACGAGCGTGCGGGTGCTCAGCCGGTAAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC
580 CACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC
* *** ** * * * * ** * * * ** *
19680910 -GAT-CTGATCTTAG-ACTG-GGAATGAACTCCTTATGCCTAA-GC-CAAT-TGG--CGAAATGA
645 GGGTCCCCCTCTGCGTGCTGCCG-AT--CCTGCTGCTG-C-AACCCTCAGTCCGGTCCGATCTTA
** ** *
19680966 G-C-GGG--TGGGCGGCG-A-GCACT-A-CC--CCGACCAAA-G-A--GA-------C----GGG
705 GACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGACGAAACGAACGGAGGGCGGGCGGGTGGG
*
19681006 ----A--T----------G-C---A----CAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAG
769 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
19681047 GCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATG
834 GCACATCTTTATATTTCTGA--TGCCAATGCCATTTTTATG
* *
19681087 GCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
19681152 TTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* ** * * * *
19681217 TTTTTCACCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGGATGCAAAAAAAAATTCGG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAG
* *
19681282 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAGTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
19681347 TATTGGCTACTGGCAACAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGGA
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GA
* * * *
19681411 GGTTTAATGAGGAATAGGGGGCGAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGC
324 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
19681476 GCAAACCCCCTCGGCCCCCTCGATCGTCGGTATCCTAATGCCG-C---C-GGTTA---G--G-TT
389 GCACA-CCCC-CGG-CCCC-CGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATG
* * * * * *
19681530 CTCCGACGATGGTGCCACTG-CGATGAAAAATGCAGCACTAGCACATGCCCAAGCCCAGAATGTG
450 CTCCGACGATGGTGCC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
19681594 CGGCC-CAACCCTCGGTCTGGTCTGATCTTTGACTGGGAATGAACTCCGTTTGGTTAGACTGGGA
514 CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA---C-------T---C-----
* * * * * *
19681658 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGTCGGCCAGACGGG
561 -T-AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG
* * * * * *
19681723 TGGGATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTACATGTTGACGATCCTGCTG-TCACA
619 CGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCA
* * * * * *
19681786 ACCCT-TGATTCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA--TAA
682 ACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * ** * ** *
19681848 --AA-TGA--GCTGGC----GGGCACTAAATCGCCCAGAGAGACAAGATGCGTAAGCCGTGGATC
746 CGAACGGAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
19681904 GATAGGGTGATAGGTGGGTTTAGGAACATCTTCATATTTCT-ATGTGCCAAAGCCATTTTTATG
811 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGA--TGCCAATGCCATTTTTATG
* * *
19681967 GCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGTCTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
19682032 TTCTATTTTTCACGACTTTCAAAACCTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * * **
19682097 GTTCTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
* *
19682162 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAATT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
19682227 TATTGGCTACTGGCAGCAAACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
19682292 GTTTAATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCG
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
19682357 CAAACCCCCTCGGCCCCCCCGATCGTCGGAACCCTAAT---GCCA--CCGGTTA---G--G-TTC
390 CACA-CCCC-CGG--CCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATGC
* * * * * * *
19682411 TCCGGCGATGGTGCCACTG-CGACGAAAAATGCAGCACTAGCACATGCCCAAGCCCAGAATGTGC
451 TCCGACGATGGTGCC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
19682475 TGCCCCAACCCTCGGTCTGATCTGATCTTTGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
515 TACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG-A------A--C-T---C------
* * * * * * *
19682540 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGTCGGCCAGACGGGT
561 T-AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGC
* * * * *
19682605 GGGATGCGCAAGCCGGGGATCGGA-CGGGTCCCTCTCTACATGCTGCCGATCCTACTG-TCACAA
620 GGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAA
* * * *
19682668 CCCT-TGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA--TAA-
683 CCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
19682729 -AAC-GA--GCTGGC----GGGCACTACATCGCCCAGAGAGACAGGATGCGTAAGCCGTGGATCG
747 GAACGGAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
19682786 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAAAGCCATTTTTATG
812 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGA--TGCCAATGCCATTTTTATG
* *
19682848 GCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
19682913 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGAAAGG
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGG
* * * * *
19682977 AGTTCTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCGTGCATAAAAAATTCAG
130 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAG
* * *
19683042 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAGTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
19683107 TATTGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGA
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GA
* ** * *
19683171 GGTTTAATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTGC
324 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
19683236 GCAAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATG
389 GC--ACACCCCCGG--CCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATG
* * *
19683301 CTCTGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGC
450 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * *
19683366 TGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
515 TACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA---C---T-C-TA-A-T----A
* * * * * *
19683431 TGAACTCTGTATGCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGGGGT
566 TG----C------C-TAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGC
* * * ** ** * * *
19683496 GGGATGCGCAAGCTGAGGATC-AGTCGGGTCCCCCTCTATGTGCTATCGATCCTGTTGCCGTAAC
620 GGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAAC
* * * * *
19683560 CCTCGGTCTGATCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A
684 CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
19683621 A-TGA--GC-GGCGGGCGGGCACTGCG-CTGACCGGAGAGACGGGATGCTCAAG-TGTGGATCGA
749 ACGGAGGGCGGGCGGGTGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
19683680 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTTTTG-TGCTAATACCATTTTTATG
813 TAGGGTGGTAGGTGGGTTTAGGCACATCTTTA-TATTTCTGATGCCAATGCCATTTTTATG
* * *
19683740 GCTTGTAAATTCATACAACGGCCACCTTAAGCCTTCTTC-TGAAGTTTCATGGCAAGACGACTCG
1 GCTTGTAAATTCATACAATGGTC-CCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
19683804 TTTTCTATTTTTGACAATTTT-AAAACTTTTT-CTGGTTTGGGATTTTTTAAAATTTTTTCAGAA
64 TTTTCTATTTTTCACGATTTTCAAAACTTTTTAC-GGTTCGAGATTTTTTAAAATTTTTTCGGAA
** * * *
19683867 GGAGTTTTAACCCCAAACATGGTAGACGTGATCCTTGTATTTATGTTGGCTTGCACAAAAAAATT
128 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
*
19683932 CAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
192 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
19683996 CTTTAATGGCTACTGGCAGCAAACCTGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
257 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
19684061 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGT
322 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * *
19684126 GGGCACACCCCGCCCGGCCCCCCGATCGTCGGAACCCCAATTTCGCCTGTCAGG---T-------
387 GCGCACA--CC-CCCGG-CCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGA
* * * * * ** *
19684181 T-CTCCGGCGATGATGCCTCGGCAAAGAAAAATGCATCACCAGCACATGCCCGAGGCCAGCATGT
448 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
19684245 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAAGAACGCCGTATGCTTAGACTGGG
513 GCTACCGCAACCCTCGGTCC-G---G----T---CT-------------G-AT-CTTAGACTGGG
* * * *
19684310 AATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
552 AATGAACTCTAATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGG
* * ** * * * *
19684374 GGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTATGTCCTGTCGATCCTACTG-TCAC
617 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GC
* *
19684438 AACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
681 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
19684503 CG-A--GTGGGCGGGCGGGCGGGCACTAC-TCTGGCGAGAGAGATGGGATGCGCAAGCCGTGGAT
746 CGAACGGAGGGCGGGCGGGTGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
19684564 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
810 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG-ATGCCAATGCCATTTTTATG
*
19684628 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
19684693 CTCTATTTTTCACGATTTTGGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
** * *
19684758 GTTTTGGCTGCAAAATTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
*
19684823 CTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
19684888 TAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
19684953 GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTG
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * * *
19685018 CACACCCCCGGCCCTCCCGATCACCGGAACCCCAATGCC-ACCGATCAGGTTCTCCGACGATGCT
390 CACACCCCCGG-CC-CCCGATCGTCGGAACCCCAATACCGTCAG-TCAGGTTATCCGACGATGCT
* * * * * * *
19685082 CCGACGATGGTACCCTGGCAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCCTGTGCTG
452 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * ** *
19685147 CCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGTAAACCCA
517 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTAATATGCCTAAGTCAACCCA
** * * * * * * * **
19685211 TGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGGTCGG
582 CAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
* * * * * * ** * *
19685276 GTCCCCCTTTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCCAATCTGATCTGAGACTGGG
647 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGG
* * * *
19685341 AATGAACTCCGTATGCCTAAGCCAACCGATG--A--AAC-GA--GCGGACGGGTGGGCACTGCGC
712 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGAGGGCGGGCGGGTGGGCACTACGT
* * * *
19685399 CAGTCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCT
777 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
19685464 TCATATTTCTGCGTGTCAATGCCATTTTTATG
842 TTATATTTCTG-ATGCCAATGCCATTTTTATG
* * * *
19685496 GCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
19685561 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTCTAAAATTTTTTCGAAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
** ** *
19685626 GTTTTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATTGAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
* * *
19685691 CCAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
19685756 TAATCGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
19685821 GTTTGATGAGGGAAAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
19685886 CACACCCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGACGATGCT
390 CACA--CCCCCGGCCCCC-GATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATGCT
* * * * *
19685951 CCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGCTG
452 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * *
19686016 TCGCAACCCTCAGACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
517 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG-A------A--C-T---C------T-
** * * * * *
19686081 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACGGCCAAAGGGGTGG
562 AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGG
* ** ** *
19686146 GATGCGCAA-TCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATGTTGCTGCCGCAACCCT
622 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCT
* * ** *
19686210 CGGTCTGGTGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG-A--
687 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* * *
19686272 GCGGGCGGGC-AGT---CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
752 GAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * * *
19686333 GTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATG
817 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG-ATGCCAATGCCATTTTTATG
* *
19686390 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAACTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
19686455 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTCAAATTTTTTCGGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
** * * **
19686520 GTTTTGGAACTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTTCCATGCACAAAACAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAG
*
19686585 C-AAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
195 CTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* ** *
19686649 TTAATGGCTACTGGCAGTAAACCTACAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTCAA
259 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
19686713 GGTTTG-TGAGGGATAAGGGGCAAATATAAGTGCCAAGTACCAGCACCCATCACACATCATGTGC
324 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
19686777 GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
389 GCACA-CCCCCGG--CCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATGC
*
19686842 TCCGATGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
451 TCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
19686906 TGCCACAACCCTTGGTACGGTCCGATCTTAGACTGAGAATGAACTCTGTATGCTTAAACTGGGAA
515 TACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG-G---G-A------ATG----AACT----C
* * * *
19686971 TCAACTTTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGCC-GACCAAAGGGG
561 T-AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGG
* ** * ** ** *
19687035 CGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTATGTGCCACCGATCCTGCTGCCGCAAC
619 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAAC
** ** * * *
19687100 CCTTGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGA
684 CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * ** * * * * *
19687165 GC-GAGCGGACGAGCGGGCAGGCACTACGTCGGTCAGAGAGACGGGATCCACAAACCGTAGATCG
749 ACGGAG-GG-CGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
19687229 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCT-TATTTCTGCATGCCAATGCCATTTTTATG
812 ATAGGGTGGTAGGTGGGTTTAGGCACATCTT-TATATTTCTG-ATGCCAATGCCATTTTTATG
* * *
19687291 GCTTGTAACTTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * * *
19687356 TTCTATTTTTTACGATTTTTGAAA-TTTTTATGGTTCAAGATTTTTTGAAATTTTTTTGGAAGGA
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* *
19687420 GTTTTGGCCCC-AACTTGGTAGATGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG
131 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
* * *
19687484 CCAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTT
195 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
19687549 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAG
260 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19687614 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
325 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
19687679 CACACCCCCCCGGCCCCCTGATCATCGGAACCCCAATGCCG-CTGGTCAGGTTCTCTGGCGATGC
390 CACA--CCCCCGGCCCCC-GATCGTCGGAACCCCAATACCGTC-AGTCAGGTTATCCGACGATGC
* * * *
19687743 TCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCAAGCTTGTGCT
451 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * *
19687808 GTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
516 ACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG-A------A--C-T---C------T
** * * * * *
19687873 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACGGCCAAAGGGGTG
562 -AA-----TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCG
* ** ** *
19687938 GGATGCGCAA-TCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATGTTGCTGCCGCAACCC
621 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC
* * ** *
19688002 TCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG-A-
686 TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC
* * *
19688065 -GCGGGCGGGC-AGT---CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
751 GGAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * *
19688125 GGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATG
816 GGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG-ATGCCAATGCCATTTTTATG
* * *
19688183 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGAATCGTT
1 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
19688248 TTCAATTTTTCACGATTTTTGAAACTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTCGGATGG
66 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGG
* * *
19688312 AGTTTTTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
130 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCA
* * ** *
19688377 GCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGACACT
194 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
19688442 TTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
259 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
19688507 GGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
324 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
19688571 GCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT
389 GCACACCCC-CGG--CCCCCGATCGTCGGAACCCCAAT
19688609 CCTATCTGTA
Statistics
Matches: 8637, Mismatches: 1022, Indels: 841
0.82 0.10 0.08
Matches are distributed among these distances:
813 35 0.00
814 54 0.01
815 3 0.00
816 1 0.00
820 6 0.00
821 1 0.00
822 239 0.03
823 189 0.02
824 3 0.00
825 19 0.00
826 3 0.00
829 1 0.00
830 1 0.00
833 1 0.00
838 2 0.00
839 71 0.01
840 10 0.00
841 5 0.00
842 5 0.00
843 6 0.00
844 1 0.00
845 3 0.00
846 4 0.00
847 61 0.01
848 3 0.00
849 6 0.00
850 6 0.00
851 2 0.00
852 5 0.00
854 1 0.00
856 5 0.00
857 4 0.00
858 154 0.02
859 259 0.03
860 59 0.01
861 4 0.00
862 105 0.01
863 9 0.00
864 2 0.00
865 3 0.00
866 6 0.00
867 9 0.00
868 558 0.06
869 136 0.02
870 13 0.00
871 8 0.00
872 486 0.06
873 176 0.02
874 98 0.01
875 147 0.02
876 14 0.00
877 13 0.00
878 17 0.00
879 15 0.00
880 775 0.09
881 762 0.09
882 14 0.00
883 84 0.01
884 6 0.00
885 12 0.00
886 53 0.01
887 129 0.01
888 172 0.02
889 158 0.02
890 20 0.00
891 257 0.03
892 730 0.08
893 386 0.04
894 701 0.08
895 73 0.01
896 12 0.00
897 13 0.00
898 84 0.01
899 150 0.02
900 240 0.03
901 557 0.06
902 176 0.02
903 3 0.00
904 1 0.00
905 1 0.00
906 4 0.00
907 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCGGCCCCCGATCGTCGGAACCCCAATACCGTCAGTCAGGTTATCCGACGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTAATATGCCTAAGTCAACCCACAAA
ACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGAGGGCGGGCGGGTGGGCACTACGTCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT
ATTTCTGATGCCAATGCCATTTTTATG
Found at i:19683068 original size:880 final size:884
Alignment explanation
Indices: 19680912--19688608 Score: 9823
Period size: 881 Copynumber: 8.7 Consensus size: 884
19680902 GATCGATCGA
* ** * * *
19680912 TCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAATTGGCGAAATGAGCGGGTGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGGC-
** * * * *
19680977 GCGAGCACTACCCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAAGTGGG
61 G-G-GCACTACATCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
19681042 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATG
124 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
19681107 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
189 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * ** * *
19681172 AAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGATTTTTCACCCCAAACTTCG
254 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCTAAACTTGG
* * *
19681236 TAGACGTGATCCTTGTATTTTTGTTGGGATGCAAAAAAAAATTCGGCTAAAAACTCGAAGTGTAC
318 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
19681301 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAGTTTATTGGCTACTGGCAACAA
383 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
19681366 ACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGGAGGTTTAATGAGGAATAGGG
448 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGG
* * * *
19681430 GGCGAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCTCGGCCCCC
512 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * * * *
19681495 TCGATCGTCGGTATCCTAATGCCGCCGGTTAGGTTCT--C--CGACGATGGTGCCACTGCGATGA
577 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCACAGCGACGATGGTGCC-CCGCGAAGA
* * * * * *
19681556 AAAATGCAGCACTAGCACATGCCCAAGCCCAGAATGTGCGGCC-CAACCCTCGGTCTGGTCTGAT
641 AAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
19681620 CTTTGACTGGGAATGAACTCCGTTTGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
706 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
19681685 ACGAAACGAGCTTGCGGGCGCTCAGTCGGCCAGACGGGTGGGATGCGCAAGCCGGGGATCGGACG
771 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGACG
* * * * * * *
19681750 GGTCCCCCTCTACATGTTGA-CGATCCTGCTGTCACAACCCTTGAT-TCGA
836 GGTCCCCCTCTACGTGCT-ACCGATCCTGCTGCCGCAACCCTCGGTCT-GG
* * * *
19681799 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATAAAATGAGCTGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCA
* ** * * *
19681864 CTAAATCGCCCAGAGAGACAAGATGCGTAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGA
66 CTACATCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19681929 ACATCTTCATATTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * ** *
19681994 AAGCCTTCACATGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGACTTTCAAAACCT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
19682059 TTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTCTGGCCCTAAACTTGGTAGATGTG
261 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTG
**
19682124 ATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
19682189 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAATTTATTGGCTACTGGCAGCAAACCTATAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
19682254 AATATCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTAATGAGGGATAGGGGGCAAATAT
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19682319 AAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCTCGGCCCCCCCGATCGTC
521 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
* * * * *
19682384 GGAACCCTAATGCCACCGGTTAGGTTCTC-C-G-G-CGATGGTGCCACTGCGACGAAAAATGCAG
586 GGAACCCCAATGCCGCCGGTCAGGTTCTCACAGCGACGATGGTGCC-CCGCGAAGAAAAATGCAG
* * * * * * * *
19682445 CACTAGCACATGCCCAAGCCCAGAATGTGCTGCCCCAACCCTCGGTCTGATCTGATCTTTGACTG
650 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
19682510 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
715 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
19682575 GCTTGCGGGCGCTCAGTCGGCCAGACGGGTGGGATGCGCAAGCCGGGGATCGGACGGGTCCCTCT
780 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCT
* * * * * * *
19682640 CTACATGCTGCCGATCCTACTGTCACAACCCTTGAT-TCGG
845 CTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GG
* *
19682680 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGAGCTGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCA
* *
19682745 CTACATCGCCCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACATCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19682810 ACATCTTCATATTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTT
131 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
19682875 AAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
19682940 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTCTGGCCCTAAACTTGGTAGATGTG
261 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTG
* * *
19683005 ATCCTTGTATTTTTGTTGGCGTGCA-TAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
19683069 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAGTTTATTGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * **
19683134 AATATCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGTTTAATGAGGGATAGGGGGTGAATA
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
19683198 TAAGGGCCAAGTACCAGCACACATCACACATCATGTGCGCAAACCCCCCCGGCCCCCCCGATCGT
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
*
19683263 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCTGACGATGGTGCCCCGACGAAGAA
585 CGGAACCCCAATGCCGCCGGTCAGGTTCT-C-AC-A-G--C-GACGATGGTGCCCCG-CGAAGAA
* * *
19683328 AAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATC
642 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
19683393 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCA
707 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
19683458 CGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGGGGTGGGATGCGCAAGCTGAGGATCAGTCGG
772 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGACGG
* * * * *
19683523 GTCCCCCTCTATGTGCTATCGATCCTGTTGCCGTAACCCTCGGTCTGA
837 GTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
*
19683571 TCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-GCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGGCG
* * * * * *
19683635 GGCACTGC-GCTGACCGGAGAGACGGGATGCTCAAG-TGTGGATCGATAGGGTGGTAGGTGGGTT
62 GGCACTACATC-GCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * * *
19683698 TAGGCACATCTTCAT-TTTTTTTGTGCTAATACCATTTTTATGGCTTGTAAATTCATACAACGGC
126 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
19683762 CACCTTAAGCCTTCTTC-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGAC-AATTTT
191 C-CCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** ** * *
19683825 AAAACTTTTT-CTGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTAACCCCAAACATG
254 GAAACTTTTTAC-GGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCTAAACTTG
* *
19683888 GTAGACGTGATCCTTGTATTTATGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
317 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
19683953 CAAGATTCTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
382 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
19684017 AACCTGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGG
447 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
19684082 GGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGGGCACACCCCGCCCGG-CCC
512 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCC
** * * * *
19684146 CCCGATCGTCGGAACCCCAATTTCGCCTGTCAGGTTCTC-C-G-G-CGATGATGCCTCGGCAAAG
576 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCACAGCGACGATGGTGCC-CCGCGAAG
* * *
19684207 AAAAATGCATCACCAGCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGA
640 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * *
19684272 TCTTAGACTGGGAAAGAACGCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
705 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
*
19684337 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GAT
770 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGA-
* * * ** * * * * *
19684401 CGAGTCCCCCTCTATGTCCTGTCGATCCTACTGTCACAACCCTCAGTCCGG
834 CGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
* * * *
19684452 TCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-----CGAGCG
* * *
19684517 GGCGGGCACTAC-TCTGGCGAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
58 GGCGGGCACTACATC-GCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
**
19684581 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
122 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
19684646 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTCTCTATTTTTCACGATTT
187 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
19684711 TGGAAACTTTTTATGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTGC-AAAAT
252 TTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-CCTAAACT
* *
19684774 TGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTG
315 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
19684839 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
380 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
19684904 CAAACCTGTAAAACCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAG
445 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
19684969 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTGCACA--CCCCCGGCCC
510 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* ** * * *
19685032 TCCCGATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTACCC
575 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-AC-A-G---CGACGATGGTGCCC
* * * *
19685097 TGGCAAAGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCCTGTGCTGCCACAACCCT---T
633 -CGCGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
19685158 --GGT-C---C----A----G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCT
696 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
19685200 AAGTAAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGTAAGCTGG
761 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * ***
19685265 GGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCCAA
826 GGATCGGACGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
* ** *
19685324 TCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC-GG-G
** * *
19685389 GGC-AC-TGCGCCAGTCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGATAGGTGGGT
64 CACTACAT-CGCC---CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
19685452 TTAGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
125 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
19685517 TCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTG
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
19685582 AAACTTTTTACGGTTCGGGATTTTCTAAAATTTTTTCGAAAGGAGTTTTGGCCATAAACTTGGTA
255 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTA
** * * *
19685647 GACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATTGAGCCAAAAACTCGAAGTGTACGA
320 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
19685712 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATCGCTACTGGCAACAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
19685777 CTATAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAAAAGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
19685842 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCTG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
19685906 ATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGACGATGCTCCGACGATGGTGCCCCGATG
580 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC--AC-A-G---CGACGATGGTGCCCCG-CG
* * * * * * *
19685971 AAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGCTGTCGCAACCCTCAGACCGGTC
637 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
19686036 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
702 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
19686101 ACCCATGAAACGAGCGTGCGGGCGCTCAGACGGCCAAAGGGGTGGGATGCGCAA-TCGGGGATC-
767 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
* * **
19686164 GACCGGGTCCCCCTCTGCGTGCAACCGATGTTGCTGCCGCAACCCTCGGTCTGG
832 GA-CGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
* * *
19686218 TGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCA
* *
19686283 GT-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTT
66 CTACA-T-CG-C--CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
19686347 TAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
126 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
19686412 CCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGA
191 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * **
19686477 AACTTTTTACGGTTCAAGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGAACTAAACTTGGTAG
256 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTAG
* ** * *
19686542 ATGTGATCCTTGTATTTTTGTTTCCATGCACAAAACAATTCAGC-AAAAACCTTGAAGTGTACAA
321 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAA
*
19686606 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
** * *
19686671 CTACAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTCAAGGTTTG-TGAGGGATAAGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
19686734 AAATATAAGTGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
19686798 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCAGCG
580 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-AC-A-G---CGACGATGGTGCCCC-GCG
* * * *
19686863 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTACGGTC
637 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * **
19686928 CGATCTTAGACTGAGAATGAACTCTGTATGCTTAAACTGGGAATCAACTTTGTATGCCTAAGTCA
702 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
19686993 ACCCACGAAACAAGCGTACGGGTGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGTCGGGGATCG
767 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
* * * * * *
19687058 GTCGAGTCCCCCTCTATGTGCCACCGATCCTGCTGCCGCAACCCTTGGTCTAG
832 GACGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
** *
19687111 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGAGCGGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGC-G--G
* ** * * * *
19687176 AGCGGGCAGGCACTACGTCGGTCAGAGAGACGGGATCCACAAACCGTAGATCGATAGGGTGGTAG
59 -GC--G--GGCACTACATCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** *
19687241 GTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAACTTCATA
119 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
19687306 CAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTACGA
184 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * *
19687371 TTTTTGAAA-TTTTTATGGTTCAAGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGCCC-CAAC
249 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAAC
* * * *
19687434 TTGGTAGATGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCCAAAAACTCGAAGC
314 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
19687499 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTA
379 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
19687564 GCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
444 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
19687629 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-C
509 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * *
19687693 CCCCTGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
574 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC--AC-A-G---CGACGATGGTGCC
* * * * *
19687758 CCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCAAGCTTGTGCTGTCGCAACCCTCAGT
632 CCG-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
19687823 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
696 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
19687888 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGACGGCCAAAGGGGTGGGATGCGCAA-TCGG
761 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * **
19687952 GGATC-GACCGGGTCCCCCTCTGCGTGCAACCGATGTTGCTGCCGCAACCCTCGGTCTGG
826 GGATCGGA-CGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
* * *
19688011 TGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCA
* *
19688076 GT-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTT
66 CTACA-T-CG-C--CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
19688140 TAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
126 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
19688205 CCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGAATCGTTTTCAATTTTTCACGATTTTTGA
191 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * * *
19688270 AACTTTTTGCGATTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTTGCCCCAAACTTTGTAG
256 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTAG
* * *
19688335 ACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAG
321 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
** *
19688400 ATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
386 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
19688465 TGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-C
451 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
19688529 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCCCGA
516 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
19688593 TCGTCGGAACCCCAAT
581 TCGTCGGAACCCCAAT
19688609 CCTATCTGTA
Statistics
Matches: 6058, Mismatches: 609, Indels: 280
0.87 0.09 0.04
Matches are distributed among these distances:
864 7 0.00
865 7 0.00
866 3 0.00
868 448 0.07
869 107 0.02
870 8 0.00
871 2 0.00
872 171 0.03
873 3 0.00
874 4 0.00
875 1 0.00
876 1 0.00
878 1 0.00
879 1 0.00
880 811 0.13
881 814 0.13
882 5 0.00
883 6 0.00
884 1 0.00
885 4 0.00
886 47 0.01
887 169 0.03
888 182 0.03
889 157 0.03
890 5 0.00
891 280 0.05
892 779 0.13
893 380 0.06
894 700 0.12
895 88 0.01
896 6 0.00
897 9 0.00
898 63 0.01
899 156 0.03
900 163 0.03
901 451 0.07
902 8 0.00
903 1 0.00
904 2 0.00
905 6 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCA
CTACATCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCACAGCGACGATGGTGCCCCGCGAAGAAAAATGCAGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTC
TACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGG
Found at i:19683421 original size:26 final size:26
Alignment explanation
Indices: 19683392--19683447 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19683382 CCGGTCCGAT
19683392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19683418 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19683444 CTTA
1 CTTA
19683448 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19684309 original size:26 final size:26
Alignment explanation
Indices: 19684273--19684325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19684263 CCAGTCCGAT
19684273 CTTAGACTGGGAAAGAACGCCGTATG
1 CTTAGACTGGGAAAGAACGCCGTATG
* * *
19684299 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACGCCGTATG
19684325 C
1 C
19684326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACGCCGTATG
Found at i:19686069 original size:26 final size:26
Alignment explanation
Indices: 19686040--19686092 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686030 CCGGTCCGAT
19686040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19686066 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19686092 C
1 C
19686093 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19686971 original size:26 final size:26
Alignment explanation
Indices: 19686932--19686984 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686922 ACGGTCCGAT
* *
19686932 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAAACTGAGAATCAACTCTGTATG
* *
19686958 CTTAAACTGGGAATCAACTTTGTATG
1 CTTAAACTGAGAATCAACTCTGTATG
19686984 C
1 C
19686985 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCTGTATG
Found at i:19687642 original size:901 final size:893
Alignment explanation
Indices: 19685171--19688608 Score: 5141
Period size: 894 Copynumber: 3.8 Consensus size: 893
19685161 CCAGTCTGAT
* *
19685171 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGTGCTCA-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
* * * ** * *
19685235 CCGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATC
66 -CGGCCAAAGGGGTGGGATGCGCAATC-GGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATC
* * * * *
19685300 CTACTACCGCAACCCTCGGTCCAATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * *
19685365 ACCGATGAAACGAGCGGACGGGTGGGCACTGCGCCAGTCAGAGAGACGGGATGCGCAAGTCGTGG
194 ACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
19685430 ATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTTAT
* * *
19685495 GGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* ** * *
19685560 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTCTAAAATTTTTTCGAAAGG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGG
* ** *
19685625 AGTTTTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACACACAAAAAAATTGA
454 AGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
19685690 GCCAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACT
518 GCCAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
19685755 TTAATCGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGA
583 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
19685820 GGTTTGATGAGGGAAAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
648 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* *
19685885 GCACACCCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGACGATGC
713 GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGC
*
19685950 TCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGCT
778 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGCT
19686015 GTCGCAACCCTCAG-ACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GTCGCAACCCTCAGTA-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
19686066 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
**
19686131 CGGCCAAAGGGGTGGGATGCGCAATCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATGTT
66 CGGCCAAAGGGGTGGGATGCGCAATCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATCCT
* * *
19686196 GCTGCCGCAACCCTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
19686261 CGACGAAACGAGCGGGCGGGCAGTCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
196 CGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
19686326 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTTATGG
* **
19686391 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* *
19686456 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTCAAATTTTTTCGGAAGGAG
391 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG
* * * ** *
19686521 TTTTGGAACTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTTCCATGCACAAAACAATTCAG-
456 TTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
19686585 CAAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CAAAAA-CTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
19686650 TAATGGCTACTGGCAGTAAACCTACAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTCAAG
584 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
19686714 GTTTG-TGAGGGATAAGGGGCAAATATAAGTGCCAAGTACCAGCACCCATCACACATCATGTGCG
649 GTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
* *
19686778 CACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
714 CACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGC
* * * *
19686842 TCCGATGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
778 TCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGC
* * ** * *
19686906 TGCCACAACCCTTGGTACGGTCCGATCTTAGACTGAGAATGAACTCTGTATG
842 TGTCGCAACCCTCAGTACGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * * * *
19686958 CTTAAACTGGGAATCAACTTTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
* * ** * ** *
19687023 CGACCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTATGTGCCACCGATCC
66 CGGCCAAAGGGGTGGGATGCGCAA-TCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATCC
* ** *
19687088 TGCTGCCGCAACCCTTGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA
130 TGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19687153 CCGACGAAATGAGCGAGCGGACGAGCGGGCAGGCACTACGTCGGTCAGAGAGACGGGATCCACAA
195 CCGACG-AA--A-CGAGC-G--G-GCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
19687218 ACCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCA
* *
19687283 TTTTTATGGCTTGTAACTTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * *
19687348 GACTCGTTTTCTATTTTTTACGATTTTTGAAA-TTTTTATGGTTCAAGATTTTTTGAAATTTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
* * * *
19687412 TGGAAGGAGTTTTGGCCCCAACTTGGTAGATGTGATCCTTGTATTTTTGTTGACATGCACAAAAA
447 CGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
19687477 AATTCAGCCAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCA
512 AATTCAGCCAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19687542 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGT
577 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19687607 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
642 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * * *
19687672 ATGTGCGCACACCCCCCCGGCCCCCTGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGG
707 ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGA
*
19687737 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCAAGCT
772 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCT
*
19687802 TGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 TGTGCTGTCGCAACCCTCAGTACGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
19687859 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
**
19687924 CGGCCAAAGGGGTGGGATGCGCAATCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATGTT
66 CGGCCAAAGGGGTGGGATGCGCAATCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATCCT
* * *
19687989 GCTGCCGCAACCCTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
19688054 CGACGAAACGAGCGGGCGGGCAGTCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
196 CGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
19688119 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGGCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTTATGG
* *
19688184 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGAATCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
* * * * *
19688249 TCAATTTTTCACGATTTTTGAAACTTTTTGCGATTCAGGATTTTTTAAAATTTTTTCGGATGGAG
391 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
19688314 TTTTTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGC
456 -TTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * ** *
19688379 TAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGACACTTT
520 CAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
19688444 AATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
585 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
19688509 TTTGATGAGGGAT-AGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
650 TTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
*
19688573 ACA-CCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT
715 ACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAAT
19688609 CCTATCTGTA
Statistics
Matches: 2281, Mismatches: 239, Indels: 48
0.89 0.09 0.02
Matches are distributed among these distances:
891 9 0.00
892 476 0.21
893 226 0.10
894 675 0.30
895 86 0.04
896 7 0.00
897 6 0.00
898 1 0.00
899 155 0.07
900 163 0.07
901 468 0.21
902 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
CGGCCAAAGGGGTGGGATGCGCAATCGGGGATCGACCGGGTCCCCCTCTGCGTGCAACCGATCCT
GCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCC
AAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCTTGTGCTGTC
GCAACCCTCAGTACGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Done.