Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 108 of 117
Found at i:19687862 original size:26 final size:26
Alignment explanation
Indices: 19687833--19687885 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19687823 CCGGTCCGAT
19687833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19687859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19687885 C
1 C
19687886 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19688853 original size:17 final size:17
Alignment explanation
Indices: 19688814--19688879 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
19688804 TTATATGTAT
*
19688814 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATA-A
19688834 TTTATTATATATTATAA
1 TTTATTATATATTATAA
* * *
19688851 TTTATTTTTTATTATTA
1 TTTATTATATATTATAA
*
19688868 TTTTTTAT-TATT
1 TTTATTATATATT
19688880 TTTCTTGTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
16 4 0.10
17 21 0.52
18 4 0.10
19 7 0.17
20 4 0.10
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATTATATATTATAA
Found at i:19688870 original size:13 final size:13
Alignment explanation
Indices: 19688852--19688879 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
19688842 ATATTATAAT
19688852 TTATTTTTTATTA
1 TTATTTTTTATTA
19688865 TTATTTTTTATTA
1 TTATTTTTTATTA
19688878 TT
1 TT
19688880 TTTCTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTTTATTA
Found at i:19689932 original size:17 final size:16
Alignment explanation
Indices: 19689898--19689937 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
19689888 TTAGATTAGG
*
19689898 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
19689914 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
19689931 TTTATTT
1 TTTATTT
19689938 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:19689973 original size:17 final size:18
Alignment explanation
Indices: 19689924--19689974 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
19689914 TTTATCTTAA
19689924 TTTTATTTTTATT-TTTG
1 TTTTATTTTTATTATTTG
19689941 TTTTACTTTTCT-TTATTT-
1 TTTTA-TTTT-TATTATTTG
19689959 TTTTATTTTTATTATT
1 TTTTATTTTTATTATT
19689975 CTATTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 1 0.03
17 14 0.47
18 11 0.37
19 4 0.13
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTATTATTTG
Found at i:19690061 original size:59 final size:59
Alignment explanation
Indices: 19689989--19690225 Score: 309
Period size: 59 Copynumber: 4.0 Consensus size: 59
19689979 TTTCTTTAAA
*
19689989 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCT
*** *
19690050 TAAAAAT-AAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
19690108 TGGAAATGAAAGTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTTCAAAAAAAATA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
19690168 TAAAAAT-AAATTTTTAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAAATTTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
19690226 CTACACAAGA
Statistics
Matches: 154, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
57 1 0.01
58 47 0.31
59 56 0.36
60 37 0.24
61 13 0.08
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAAATTTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:19693770 original size:7 final size:8
Alignment explanation
Indices: 19693753--19693778 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
19693743 AAAAGATCTC
19693753 AAAGAAAA
1 AAAGAAAA
19693761 AAAGAAAA
1 AAAGAAAA
19693769 AAAGAAAA
1 AAAGAAAA
19693777 AA
1 AA
19693779 TGGCACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAGAAAA
Found at i:19694140 original size:11 final size:10
Alignment explanation
Indices: 19694126--19694167 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
19694116 AAAGATGATG
*
19694126 AAAAAAGGAA
1 AAAAAAAGAA
19694136 AAAAAAAGAA
1 AAAAAAAGAA
19694146 AGAAAAAAGAA
1 A-AAAAAAGAA
*
19694157 AAAGAAAGAA
1 AAAAAAAGAA
19694167 A
1 A
19694168 TGAGAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:19694151 original size:21 final size:22
Alignment explanation
Indices: 19694099--19694185 Score: 88
Period size: 22 Copynumber: 3.9 Consensus size: 22
19694089 AATGGATGAA
* *
19694099 AAATGAGAAAAG-AGAAAAAAG
1 AAATGAAAAAAGAAAAAAAAAG
*
19694120 ATGATGAAAAAAGGAAAAAAAAAG
1 A-AATGAAAAAA-GAAAAAAAAAG
*
19694144 AAA-GAAAAAAGAAAAAGAAAG
1 AAATGAAAAAAGAAAAAAAAAG
*
19694165 AAATGAGAAAATGAAAAAAAA
1 AAATGA-AAAAAGAAAAAAAA
19694186 GAGATTCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 14 0.26
22 17 0.31
23 14 0.26
24 9 0.17
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.06
Consensus pattern (22 bp):
AAATGAAAAAAGAAAAAAAAAG
Found at i:19694160 original size:17 final size:17
Alignment explanation
Indices: 19694134--19694185 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
19694124 TGAAAAAAGG
19694134 AAAA-AAAAAGAAAGAA
1 AAAAGAAAAAGAAAGAA
19694150 AAAAGAAAAAGAAAGAA
1 AAAAGAAAAAGAAAGAA
** *
19694167 ATGAGAAAATGAAA-AA
1 AAAAGAAAAAGAAAGAA
19694183 AAA
1 AAA
19694186 GAGATTCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 7 0.23
17 23 0.77
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (17 bp):
AAAAGAAAAAGAAAGAA
Found at i:19695510 original size:41 final size:41
Alignment explanation
Indices: 19695434--19695854 Score: 666
Period size: 41 Copynumber: 10.1 Consensus size: 41
19695424 ATGATTGTAA
* *
19695434 AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
19695476 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
19695517 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
19695558 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
19695599 AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
19695641 AGGAGCAATTTATTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
19695683 AGGAGCAATTTACTTTT-CAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
19695724 AGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
19695765 AGGAGCAATTTATTTTCAAAAGTCATAGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
19695806 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
19695849 AGGAGC
1 AGGAGC
19695855 TTCGGTAAAA
Statistics
Matches: 357, Mismatches: 15, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
40 8 0.02
41 219 0.61
42 100 0.28
43 30 0.08
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:19695798 original size:207 final size:208
Alignment explanation
Indices: 19695434--19695854 Score: 697
Period size: 207 Copynumber: 2.0 Consensus size: 208
19695424 ATGATTGTAA
19695434 AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
*
19695499 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
66 CATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
* * *
19695564 AATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAAGTCATG
131 AATTTATTTTCAAAAGTCATAGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTC-AAAGTCATG
*
19695627 GTGCCTCTGTTTAG
195 GAGCCTCTGTTTAG
* *
19695641 AGGAGCAATTTATTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAG
1 AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAG
19695705 TCATGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGA
65 TCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGA
* *
19695769 GCAATTTATTTTCAAAAGTCATAGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGT
129 GCAATTTATTTTCAAAAGTCATAGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCAT
*
19695834 TGAGCCTCTGTTTAG
194 GGAGCCTCTGTTTAG
19695849 AGGAGC
1 AGGAGC
19695855 TTCGGTAAAA
Statistics
Matches: 200, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
206 5 0.03
207 160 0.80
208 34 0.17
209 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (208 bp):
AGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
CATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
AATTTATTTTCAAAAGTCATAGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCATGG
AGCCTCTGTTTAG
Found at i:19695887 original size:13 final size:12
Alignment explanation
Indices: 19695861--19695915 Score: 76
Period size: 13 Copynumber: 4.5 Consensus size: 12
19695851 GAGCTTCGGT
19695861 AAAAAAAAAAA-
1 AAAAAAAAAAAC
*
19695872 AAAAACAAAAAC
1 AAAAAAAAAAAC
19695884 AAAAACAAAAAAC
1 AAAAA-AAAAAAC
19695897 AAAAAAAAAACAC
1 AAAAAAAAAA-AC
19695910 AAAAAA
1 AAAAAA
19695916 TGACAATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.26
12 10 0.26
13 19 0.49
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:19695915 original size:1 final size:1
Alignment explanation
Indices: 19695861--19695906 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
19695851 GAGCTTCGGT
* * * *
19695861 AAAAAAAAAAAAAAAACAAAAACAAAAACAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
19695907 CACAAAAAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:19696152 original size:24 final size:23
Alignment explanation
Indices: 19696112--19696268 Score: 79
Period size: 23 Copynumber: 6.9 Consensus size: 23
19696102 TTTTCTTTTG
*
19696112 TATT-TTATGATTTTATTATTTAT
1 TATTATTAT-ATTATATTATTTAT
19696135 TATTATTATATGTATATT-TTTACT
1 TATTATTATAT-TATATTATTTA-T
*
19696159 TATTTATT-TATT-TATTTATTTTT
1 TA-TTATTATATTATA-TTATTTAT
* *
19696182 CTGTTAATAT-TTATATGTA-TT-T
1 -TATTATTATATTATAT-TATTTAT
*
19696204 TATT-TATATAGTTCTA-TATTTAT
1 TATTAT-TATA-TTATATTATTTAT
19696227 TATATATTATA--AT-TTATTTAT
1 TAT-TATTATATTATATTATTTAT
19696248 TATTATTAT-TTATTATTATTT
1 TATTATTATATTA-TATTATTT
19696269 TTCTTGTAAT
Statistics
Matches: 104, Mismatches: 8, Indels: 44
0.67 0.05 0.28
Matches are distributed among these distances:
20 6 0.06
21 20 0.19
22 6 0.06
23 37 0.36
24 29 0.28
25 6 0.06
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (23 bp):
TATTATTATATTATATTATTTAT
Found at i:19696167 original size:4 final size:4
Alignment explanation
Indices: 19696123--19696261 Score: 53
Period size: 4 Copynumber: 34.5 Consensus size: 4
19696113 ATTTTATGAT
* *
19696123 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * *
19696169 TTTA TTTA TTT- TTCTG TTAATA TTTA TATGTA TTTTA TTTA TATA GTTC
1 TTTA TTTA TTTA TT-TA TT--TA TTTA T-T-TA -TTTA TTTA TTTA TTTA
* *
19696218 TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA TTTA TT
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
19696262 ATTATTTTTC
Statistics
Matches: 104, Mismatches: 16, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
3 24 0.23
4 58 0.56
5 14 0.13
6 7 0.07
7 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:19696223 original size:21 final size:17
Alignment explanation
Indices: 19696189--19696261 Score: 64
Period size: 17 Copynumber: 4.2 Consensus size: 17
19696179 TTTCTGTTAA
*
19696189 TATTTATAT-GTAT-TT
1 TATTTATATATTATATT
19696204 TATTTATATAGTTCTATATT
1 TATTTATATA--T-TATATT
19696224 TA-TTATATATTATAATT
1 TATTTATATATTAT-ATT
19696241 TATTTAT-TATTATTATT
1 TATTTATATATTA-TATT
19696258 TATT
1 TATT
19696262 ATTATTTTTC
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
15 9 0.18
16 3 0.06
17 18 0.37
18 5 0.10
19 10 0.20
20 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (17 bp):
TATTTATATATTATATT
Found at i:19696817 original size:20 final size:21
Alignment explanation
Indices: 19696789--19696838 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
19696779 TCCGGTGAAC
*
19696789 TTCCAGTGAAAAAACCCAG-A
1 TTCCGGTGAAAAAACCCAGAA
* *
19696809 TTCCGGTGACAAAATCCAGAA
1 TTCCGGTGAAAAAACCCAGAA
19696830 TT-CGGTGAA
1 TTCCGGTGAA
19696839 TCTTCAATCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (21 bp):
TTCCGGTGAAAAAACCCAGAA
Found at i:19697262 original size:17 final size:16
Alignment explanation
Indices: 19697228--19697267 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
19697218 TTAGATTAGG
*
19697228 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
19697244 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
19697261 TTTATTT
1 TTTATTT
19697268 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:19697274 original size:17 final size:17
Alignment explanation
Indices: 19697254--19697301 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
19697244 TTTATCTTAA
19697254 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
19697270 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
19697288 TTTCTATTTTTATT
1 TTT-TATTTTTATT
19697302 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:19697301 original size:14 final size:14
Alignment explanation
Indices: 19697254--19697312 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
19697244 TTTATCTTAA
19697254 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
19697266 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
19697280 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
19697295 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
19697309 TTTT
1 TTTT
19697313 TTAAATAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 19 0.51
15 11 0.30
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:19697407 original size:60 final size:59
Alignment explanation
Indices: 19697319--19697495 Score: 257
Period size: 59 Copynumber: 2.9 Consensus size: 59
19697309 TTTTTTAAAT
*
19697319 AAAATCAAAATTTCCAAAAAAAATATTTTTAGGTAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTT-CAAAAAAAATATTTTTAGG-AAAAGTTGAAAGTATCAATTTTCCTTA
* *
19697380 GAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAAATTTCAAAAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTA
* * *
19697440 AAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAATCAAAATTTCAAAAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTCC
19697496 CTACAAAAGA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
59 48 0.44
60 46 0.43
61 14 0.13
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (59 bp):
AAAATCAAAATTTCAAAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTA
Found at i:19697482 original size:59 final size:60
Alignment explanation
Indices: 19697319--19697495 Score: 266
Period size: 60 Copynumber: 3.0 Consensus size: 60
19697309 TTTTTTAAAT
* * * *
19697319 AAAATCAAAATTTCCAAAAAAAATATTTTTAGGTAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATC-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
* * *
19697380 GAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
*
19697440 AAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
19697496 CTACAAAAGA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
59 48 0.46
60 52 0.50
61 5 0.05
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
AAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
Found at i:19699021 original size:26 final size:26
Alignment explanation
Indices: 19698985--19699034 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19698975 CCAGTATGAT
19698985 CTTACACTGGGAATGAACTCCGTACG
1 CTTACACTGGGAATGAACTCCGTACG
*
19699011 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
19699035 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTACG
Found at i:19699429 original size:898 final size:892
Alignment explanation
Indices: 19697977--19700091 Score: 3083
Period size: 898 Copynumber: 2.4 Consensus size: 892
19697967 TATGACACTA
* * * * **
19697977 CCGGACAGGTTCTTCGATGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
* * * *
19698042 CATGTCCGATCCCAGTATGTGCTGCTGCAACCCTCGGTCCG-ATCCGATCTTAGACTGGGAATGA
66 CAT-TCCCAACCCAGCATGTGCTGCCGCAACCCTCGGTCCGTAT--GATCTTAGACTGGGAATGA
* * * * *
19698106 ACTCCGTATGCTAAGATTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGTGTGCG
128 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * *
19698171 GGCACTCAGTTCGGCTAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGGTCCCTCTCTACGT
193 GGCGCTCAG-CCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGT
* * * * * * * * *
19698236 GCTGCCGATCATGCTGTCGCAACCCTCGGTCTGGTCTAATCTTAGACTCGAAATGAACTCTGTAT
257 GTTGCCAATCTTGCTGTCGTAACCCTCAGTCTGGTCAAATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
19698301 GCCGAAGCCAATCGACAAAATGAGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCG
322 GCAGAAGCCAACCGACAAAACGAGCGGGCGAGCAGGCACTACGTCAGCCAGAGAGACGGGATGCG
* *
19698366 CAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATG
387 CAAGCCGTGGAACGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* **
19698431 CCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAA
452 CCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACATGAAGTTTCATGGCAA
*
19698496 GACGACTCATTTTCTATATTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTCAAAATTT
517 GACGACTCATTTTCTATATTTCACGATTATCAAAACTTTTTACGGTTCAGGATTTTTCAAAATTT
* *
19698561 TTTGGGAAAGATTTTTGGCCCCAACCTTGGTAAACGTGATCCTTGTATTTTT-TTGGCATGCATA
582 TTTCGGAAAGATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCATA
*
19698625 AAAAAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTACGACCATTTGAAAAAAACTGT-CCCA
647 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTACGACCATTTG-AAAAAACTGTCCCCA
* * *
19698689 -TTCTAGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAGGGGGGT
711 TTTC-AGACACTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
19698753 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
775 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
19698818 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATTG-TCGGAACCCCAATGCCG
840 CACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCT-GGAACCCCAATGCCG
* *
19698872 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGTA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
** * * *
19698937 CATTCCCAAGCATAGCATGTGCTGCCGTAACCCTCGATCCAGTATGATCTTACACTGGGAATGAA
66 CATTCCCAA-CCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTATGATCTTAGACTGGGAATGAA
* * * *
19699002 CTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTGCAG
129 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* *
19699067 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGACCGGGTCCCCCTCTGCGTGT
194 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGT
* **
19699132 TGTCAATCTTGCTACCGTAACCCTCAGTCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGC
259 TGCCAATCTTGCTGTCGTAACCCTCAGTCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGC
* ** *
19699197 ATAAGCCAACCGATGAAACGAGCAGGCGAGCGAGCAGGCACTACGTCGGCCAGAGAGACGGGATG
324 AGAAGCCAACCGACAAAACGAGC--G-G-GCGAGCAGGCACTACGTCAGCCAGAGAGACGGGATG
* *
19699262 CGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
385 CGCAAGCCGTGGAACGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
*
19699327 TGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
450 TGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACATGAAGTTTCATGGC
* * * * ** *
19699392 AAGACGACTCGTTTTCTATTTTTCATGATTATCAAAACTTTTTATGGTTTGGGATTTTTTAAAAT
515 AAGACGACTCATTTTCTATATTTCACGATTATCAAAACTTTTTACGGTTCAGGATTTTTCAAAAT
* *
19699457 TTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
580 TTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCA
** *
19699522 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
645 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTACGACCATTTGAAAAAACTGTCCCC
* *
19699587 ATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGT
710 ATTTCAGACACTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
19699652 GTTAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
775 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
19699717 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCTG
840 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCG
* * *
19699770 CCGGTCAGGTTCTCCGGCGAAGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
* * * *
19699835 CATGCACGAACCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
66 CATTC-CCAACCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTATGATCTTAGACTGGGAATGAA
*
19699900 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
129 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
19699965 GCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCG-GGAATCGACCGGTTCCACTTCTGCGTG
194 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGACCGGGTCCCCCTCTGCGTG
* *
19700029 TTGCCAATCTTGCTGTCGTAACCCTCAGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTA
258 TTGCCAATCTTGCTGTCGTAACCCTCAGT-CTGGTCAAATCTTAGACTAGGAATGAACTCCGTA
19700092 CGCTTAGACT
Statistics
Matches: 1086, Mismatches: 119, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
894 123 0.11
895 167 0.15
896 2 0.00
897 5 0.00
898 576 0.53
899 210 0.19
900 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
CATTCCCAACCCAGCATGTGCTGCCGCAACCCTCGGTCCGTATGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGTTG
CCAATCTTGCTGTCGTAACCCTCAGTCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGCAG
AAGCCAACCGACAAAACGAGCGGGCGAGCAGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAG
CCGTGGAACGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
TTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACATGAAGTTTCATGGCAAGACG
ACTCATTTTCTATATTTCACGATTATCAAAACTTTTTACGGTTCAGGATTTTTCAAAATTTTTTC
GGAAAGATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTACGACCATTTGAAAAAACTGTCCCCATTTCA
GACACTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCG
Found at i:19699919 original size:26 final size:26
Alignment explanation
Indices: 19699883--19699935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699873 CTGGTCTGAT
*
19699883 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19699909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19699935 C
1 C
19699936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19700104 original size:26 final size:26
Alignment explanation
Indices: 19700068--19700117 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19700058 CCTGTCCAAT
19700068 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
19700094 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19700118 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:19700179 original size:185 final size:184
Alignment explanation
Indices: 19699863--19700275 Score: 589
Period size: 185 Copynumber: 2.2 Consensus size: 184
19699853 GTGCTGCCGC
* * * * *
19699863 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACT
19699928 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATG
* * * *
19699993 CGCAAGCCG-GGAATCGACCGGTTCCACTTCTGCGTGTTGCCAATCTTGCTGTC-G
131 CGCAAGCCGAGG-ATCGACCGGGTCCACCTCTGCGTGCTGCCAATCTTGCT-ACAG
*
19700047 TAACCCTCAGTCCTGTCCA-ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAA
1 -AACCCTCAGTCCGGT-CAGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAA
* * **
19700111 CTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGA
64 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* * * * *
19700176 TGCGCAAGTCGAGGATCGGCCGGGTCCCCCTCTGCTTGCTGTCAATCTTGCTACAG
129 TGCGCAAGCCGAGGATCGACCGGGTCCACCTCTGCGTGCTGCCAATCTTGCTACAG
*
19700232 AACCCTCAGTCCGGTCAGATCTTCGACTGGGAATGAACTCCGTA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTA
19700276 TTCCTAAGCC
Statistics
Matches: 203, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
183 2 0.01
184 40 0.20
185 158 0.78
186 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATG
CGCAAGCCGAGGATCGACCGGGTCCACCTCTGCGTGCTGCCAATCTTGCTACAG
Found at i:19700991 original size:26 final size:26
Alignment explanation
Indices: 19700955--19701007 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19700945 CCAGTCCGAT
*
19700955 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19700981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19701007 C
1 C
19701008 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19701871 original size:26 final size:26
Alignment explanation
Indices: 19701835--19701887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19701825 CCAGTCCGAT
*
19701835 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19701861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19701887 C
1 C
19701888 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19703657 original size:26 final size:26
Alignment explanation
Indices: 19703619--19703671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19703609 CCAGTCTAAT
* *
19703619 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
*
19703645 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
19703671 C
1 C
19703672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:19704555 original size:26 final size:26
Alignment explanation
Indices: 19704517--19704569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19704507 CCGATCTGAT
* * *
19704517 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
19704543 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
19704569 C
1 C
19704570 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:19705437 original size:902 final size:896
Alignment explanation
Indices: 19700061--19712425 Score: 15879
Period size: 880 Copynumber: 13.9 Consensus size: 896
19700051 CCTCAGTCCT
* *
19700061 GTCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
19700126 TCAACCCATGAAAGGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGTC-GAGG
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GG
** * * * * * * *
19700190 ATCGGCCGGGTCCCCCTCTGCTTGCTGTCAATCTTGCTACAG-AACCCTCAGTCCGGTCAGATCT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * * * *
19700254 TCGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATGAAACGAGCTGGCGGGCGAGCGGGCA
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCA
* *
19700319 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGC
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
19700384 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTACGACTTGTAAATTCATACAATGGTCCCTT
325 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
19700449 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTATCAAAACTT
390 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * *
19700514 TTTATGGTTCGGCATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
455 TTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
19700579 ATCCTTGTATTTTTGTCGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
519 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
19700644 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCCGCAAACTTGTAA
584 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
**
19700709 AATCTCAAATGCTCTTTAAGGATGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
649 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
19700774 AGGGGCCAAGTACCAGTACCCATCGCACATCATGTGTGCATACCCCCCGGCCCCCCCGATCGTCA
714 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
* * *
19700839 GAATCCCAATGCCGCCAGTCAGG---T------T-CTCCGGCGATGGTGCCCCAACGAAGAAAAA
779 GAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * * * *
19700894 TGCGACACCAGCACATGCTCGAGCCCAGCATGGGCTACTGTAACCCTCGATCCA
844 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CA
* *
19700948 GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
19701013 TCAACCCACGAAACGAACGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCACAAGTCAGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * * * **
19701078 TCGGTCGGGTCTCCCTCTGCGTGCTGCCAATCCGGTTGCTGCAACCATCATTCCGGTCTGATCTT
131 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* *
19701143 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGA--------GCGGGCGGGCAC
196 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCAC
* * *
19701200 TACACCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
19701265 CATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
326 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
19701330 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* **
19701395 TTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
456 TT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * *
19701460 TCCTTGTATTTTTGTTGGCTTGCACAAAGAAATTCAGTTAAAAACCCGAAGTGTACAAGATTTTG
520 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
19701525 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCCGCAAACTTGTAAA
585 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
19701590 ATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTGGATGAGGGATAGGGGGCCAATATA
650 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * **
19701655 GGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCCGGCCCCCCCGATCGTCAA
715 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
* * * * *
19701720 AATCCCAATGCCG-C---CA--AT-T--A-GGTTCTCCGGCGATGGTGCCCCAACGAAGAAAAAT
780 AACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * *
19701775 GCGGCACCAGCACATGCTCGAGCCCAGCATGGGCTACCGCAACCCTCGATCCA
845 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CA
* *
19701828 GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
19701893 TCAACCCACGAAACGAACGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCACAAGTCAGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * * * * ** *
19701958 TCGGTTGGGTCTCCCTCTGCGTGCTGCCAATCCGGTTGCTGCAACCATTAGTCCGGTCTAATCTT
131 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* *
19702023 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGA--------GCGGGCGGGCAC
196 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCAC
* * *
19702080 TACACCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
19702145 CATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
326 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
19702210 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * *
19702275 TTGAGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAATTTGGTAGACGTGA
456 TTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
19702340 TCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTG
520 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
19702405 TGACCTTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
585 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
19702470 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
650 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
19702535 AGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGA
715 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
* ** *
19702600 AACCCCAATGCTGTTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA
780 AACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * *
19702665 TGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGACCG
844 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCA
* * * *
19702719 GTCCGATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTAGGAATGAACTCTGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19702784 TTAACCTACGAAACGAGCGTGTGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * ** *
19702849 TCGATCGAGTCCCCCCTCTACGTGCTGCCAATCCTGCTACCGTAACCCTCGGTTTGGT-TCAATC
131 TCGATCGGGT-CCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATC
* * *
19702913 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCAGGCGTGCGAAG
194 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC--G-G-GCG-GG
* * * *
19702978 CGGGCACTATGCCGGCCAGGGACACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
254 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** *
19703043 TTAGGCACATCTTCACGTTTC--CATGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAAT
319 TTAGGCACATCTTCATATTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
19703106 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
382 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
19703171 GGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTGGAAGGCA-TTTTGGCCCCAAACTTG
447 TGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTG
* *
19703235 GTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
510 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
19703300 CAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGTAGCA
575 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
19703365 AACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
640 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
**
19703430 GGCCAATATAAGATCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
705 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* *
19703494 CGATCGCCGGAACCCCAATGCCGCCGGTCAGG---T------T-CTCCGGCGATGGTGCCCCGAT
770 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGAC
* * *
19703549 AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGCCCA
835 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCA
** * * *
19703612 GTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATAAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
19703677 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * * * * *
19703742 TCGATCGAGTCCCCCGCTGCATGCTACCGATCTTGCTGCTGCAACCCTCGGTCTGGGTC-GATCT
131 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTC-CGGTCTGATCT
* * * * **
19703806 TGGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGAAA
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCA
*
19703871 CTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19703936 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAAAAAAATGGTCCCTT
325 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
19704001 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTCTTTTTCACGATTTTTGAAACTT
390 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * *
19704066 TTTGAGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAATTTGGTAGACGTG
455 TTTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
19704131 ATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTT
519 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
19704196 GTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAA
584 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
19704261 AATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAGGTTTGATGAGGGGTAGGGGGCCAATAT
649 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19704326 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG-CCCGCCGATCGCCG
714 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
* * * **
19704390 GAACCCCAATGTCGCCGGTCTGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGGTGAA-ACAA
779 GAACCCCAATGCCGCCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGACGAAGA-AA
* * * * *
19704454 AATGCGGCACCAGCACAAGCCCGAGCCCAGTATGTGCTGCCGCAACCCTTGATCC
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
* * * *
19704509 GATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAA
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * **
19704574 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGACGGGCGAGATGCGCAAGTTAGGG
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * **
19704639 ATCGATCGGGTCCCCCTCTGTGTGCTACCAATCCTACTGCCGCAACCCTCAATCCGGTCTGATCT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
19704704 TAGATTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAAAGAGCGGGCGGGCGGGTGGGCG
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGC----GGGCG
* * * **
19704769 GGCACTACGTCGGCCAGAGAGATGGGATGCCCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTT
256 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
19704834 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACATTGGTC
321 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
19704899 CATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAA
386 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
19704964 ACTTTTTGGTTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGAC
451 ACTTTTTGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *** *
19705029 ATGATCCCTGTATTTTTTTTGGCGTGCACAAAAGTGTTCAGCCAAAAACTCGAAGTGTACAAGAT
516 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
19705094 TTTGTGACCATTTGAAAAAATTATCCCCATTTCAGACACTTTAAT-GCTTACTGGCAGCAAACCT
581 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TACTGGCAGCAAACCT
* * *
19705158 GTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCA
645 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
19705223 ATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATT
710 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * *
19705288 G-CTGGAACCCCAGTGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAACGAA
775 GTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * *
19705352 GAAAAATGCTGCACTAGCACATGCCCGAGCCCAACATGT-ATAGCCGCAACCCTCGGTCAA
838 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTC-A
* * *
19705412 GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGGAATAAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** *
19705477 TCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGTGGGATGCATAAGCC-GGAA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG-G
* ** * * * ** * ** ** * **
19705541 ATTGGGCGGGTCCCCTTCTACATGCTGCTGATTCTGCTATCGCAACCCTCAATCTGGTCCAATCT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
19705606 TAGATTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCG
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC----GGGCGGGCG
* * *
19705671 AGCACTACGCCGGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
256 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
19705736 AGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTC
321 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
19705800 CCTTAA-CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAGGA-TTTTGAA
386 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-A
*** * * * **
19705863 AACTTTTTCCTATTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTCACCCCAAACTTGGTAG
450 AACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
19705928 ACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACGAG
514 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * *
19705993 ATTTTGTCACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTACCGACAGCAAACA
579 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
19706057 TGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCC
644 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
19706122 AATATAAGGGCCAAGTGCCGGCACCCATCGCACATCATGTGTGCACACCCCACCCGGCCCTCCCG
709 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCG
* * * * **
19706187 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTTTTCGATGATGCTCCGGTGATGGTGCCCCGGGG
772 ATCGTCGGAACCCCAATGCCGCCGGTCAGG-TTCTCCACGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
19706252 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTACTGTCACAACCCTCGGTCC
836 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
* * * * *
19706313 GATCCGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAATCTGTATCCCTAA
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
19706378 GTCAACCCACAAAACGACCGTGTGGCCGCTCCGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGGG
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * ** **
19706443 ATCGACCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGTTAGGTCCAATCT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* ** * * *
19706508 TAGACTAGGAATGAACTCCGTATGCCTAAGATAAACTGACG--AA-A-CGAGCGGACGGGCGGGC
195 TAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGC
** * * *
19706569 ACTACGTTGGCCAGAGAGATGGGATACGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGG
259 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * *
19706634 CACATCTTCATATTT-TGTGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCCT
324 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * ** *
19706698 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTCAAAAAT
389 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
19706763 TTTTGAGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACG
454 TTTTG-GGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19706827 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATT-AGCTAAAAACACGAAGTGTACAAGATT
517 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
19706891 TTGTGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTAT
582 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
19706956 AAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAAT
647 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
19707021 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCGATCGT
712 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * *
19707085 TGGAGCCCCAATGTCGCCGGTCAGG-T-T---C--T-CT--GGCGATGGTGCCCCGACGAAGAAA
777 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * **
19707140 AATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTTGCAA-CC-C--TC-
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
19707190 G---G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
19707235 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGTAAGCCGGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* ** *
19707300 TCGACCGGGTCCCCCTCTGCGTGCTG----T-C-G-T-----AACCCTTAG--CTGTC-GATCTT
131 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * ** * * *
19707350 AGTCTTGGAATGAACTTTGTATGCCTAATCCAACTGAC-AAAACGAGCGGGCGGACGGGCGAGCG
196 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA-GAGC--G-GG-CGGGCGGGCG
* * *
19707414 GGCACTACGCTGGTC-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTT
256 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*** *
19707478 ACAAAGATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
321 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
19707543 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
386 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * *
19707608 ACTTTTTGCGGTT-GAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTAGTAG
451 ACTTTTTG-GGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
19707672 ACACGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAT
514 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
19707737 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
579 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
19707802 TGTAAAATCCCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCT
644 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
19707867 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGGCCCCCCCGAT
709 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * ** ** * * **
19707932 CATCGGATCTCCAATGCTGTTGGTCAGGTTCTCTGGCGATGCTCCAGTGATGGTG-CCCGGTGAA
774 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * * * *
19707996 GAAAAATGCGGCACCGGCACATGCCCAAGCCCAACATATGCTACCGTAACCCTTGGTCA
838 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
* *
19708055 GGTCCGATCTTCGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 -GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
19708120 GTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGA-GGGCTGGGATGCACAAGCC-GA
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCAG-
* * * * * * * * *
19708183 GGATCGGTCGGGTCCCCCTCTGAGTGCTGTCGATCCCGCTACCGCATCCCCTCGATCCGGTTTGA
128 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA-ACCCTCGGTCCGGTCTGA
* * * ** **
19708248 TCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGCCG--AA-A-----CGAACGGGTAG
192 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGG
* * * *
19708305 GCACTACGTCTGCCATAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
257 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
19708370 GGTACATCTTCATATTTCT--ATGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
322 GGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** ** **
19708433 CCCTTAA-CCTTCTTGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCACAATTTTTGA
385 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* ** * * * *
19708497 AACTTTTTACGGCTT-GGGATTTTTTAAAAAATTTTCGAAAAGAGTTTTGGCCCCATACCTGGTA
450 AACTTTTT--GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
19708561 GACGTGATCCTTGTATTTCTTTTGGCATCCA-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAA
513 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
19708625 GATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAAC
578 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
19708690 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGC
643 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
19708755 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTGCCCCCCCCGA
708 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * *
19708819 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAAGTGATGCTCCGACGATGGTGCCCCGACGA
773 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGACGA
* *
19708884 AGAAAAATGTGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTA
837 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-A
* * * * *
19708945 CTTCAACCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCTTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
19709010 TCAACCCACAAAACCAGCGTGGGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGTCGGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * * * * * *
19709075 GCGGTCGGGTCCCCCTCTACGTGCT-CTCGATCTTACTGCCGCAACTCTCGGTTCGGTCCGATCT
131 TCGATCGGGTCCCCCTCTGCGTGCTGC-CAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
19709139 TAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAAGCGGGCGGGCG
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A----G--AGCGGGCGGGCG
* * * * *
19709204 GTCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGATGGTAGCTGG
252 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
19709269 GTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATAGAAT
317 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
19709334 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACACGTTTTCTATTTTTCATGATTTT
382 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * * * *
19709399 TGAAACTTTTTACGGTTTGGGAATTTTTAAAATATTTTCGAAAGGAGTTTTGTCCCCAAACTTAG
447 TGAAACTTTTT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
19709464 TAGATGTGATCCTTGTAATTTTCTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
511 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
19709529 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
576 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** * *
19709594 ACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCCTGGTATGGTGAGGGATAGGGG
641 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
19709659 GCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCCGACCCC
706 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCC
* * *
19709724 CCGATCGTC-GAACCCCAATGTCGCCGGTCAGG-T-T---C--T--T-CGACGATGCTGCCCC-A
769 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGA
* * * * *
19709777 CGAAGAAAAATGCGACACCAGCACGTGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCC
834 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
* *
19709840 GATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
19709905 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * * *
19709970 ATCAATCGGGACCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
19710035 TAGACTTGGAATGAACTCTGTATGCCTAAGCAAACCGTCGAAACA-AGCGGGCGGGCGGGCGGAC
195 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAGCGGGCGGGC--G-GG-C
* *
19710099 GGGCACTACGCCGGGCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
255 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
19710164 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGT
320 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
19710229 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
385 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
19710294 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAG
450 AACTTTTTG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
19710359 ACATGATCGTTGTATTTTTTTTGGCATGCAC-AAAAAATTTAGCTACAAACTCGAAGTGTACAAG
514 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
19710423 ATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
579 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * * * * *
19710488 TGTAAAATCTGAAATGCCCATTAAGAGGGTGCGAGTTCTAGAGATTTGATGAGGGAGAGGGGGCC
644 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
19710553 AATACAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCGGCCCCCCCAAT
709 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* **
19710618 CGTCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCACCGATGCTCCGGCGATGGTGCCCCGGTGAA
774 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGACGAA
* * * *** * * * * * *
19710682 GAAAATTACGACACCAGCA-ATGCCCGAGTGAAGCATTTGTTGCTGTAACACTCGGTCC
838 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
*
19710740 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * *
19710805 CTCAACCCACGAAATAAGCGTACGGGCGCTCAACCGGCGAGAGGGGCGGGATGCGCAAGCCGGGG
65 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * * * * *
19710870 ATCGGTCAGGTCCCCCTCTGCGTGCTGCTAATCCTACT-CCAGTAACCCTCAGTCTGATCCT-AT
130 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCC-GCAACCCTCGGTCCGGT-CTGAT
* *
19710933 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATA-A----GCGAGCGGGCGG
193 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAGCGGGCGGGCGGGCGG
* * * *
19710993 GCACTACGTCGGCCAGAGAGACGGGATACGCAAGTCGTGGATCGATAAGGTGGTAGGTGGGTTTA
257 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
19711058 GGCACATCTTCATATTTCTGTATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
322 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
19711123 GTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
387 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * * *
19711188 ATTTTTGGCGTTCTGGACTTTTTAAAATTTTTTCGAAAGGA-TTGTTAGCCCTAAACTTGGTAGA
452 CTTTTTGG-GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT-TTGGCCCCAAACTTGGTAGA
* *
19711252 CGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
515 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
19711317 TTTTGTGACCTTTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
580 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
19711382 GTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCA
645 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
19711447 ATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGCCCCCCCGA
710 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGA
** * * * *
19711512 TCG-CATTAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGG-GATGGTGCCCCGATG
773 TCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGACG
* * *
19711575 AAGAAAAATGGGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
836 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-A
* * * *
19711637 GTTCGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGGATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
19711702 TCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCTAGGGA
66 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * ** * **
19711767 TCGA---------CCTCTGCGTGCTGCCAATCCTACTACCATAACCCTCGGTCCTGTCCAATCTT
131 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * * *
19711823 AGACTTGGAATGAACTCTGTATGCCTAAGCCAATCGACG---A-A----GCGAGCGGGCGGGCAC
196 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCAC
* * *
19711880 TACGCCGGCCAAAGAGACGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
19711945 CATCTTCATATTTCTACGTGCCAGTGCCATTTTTATGGCTTGTAAATTCGTACAATAGTCCCTTA
326 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
19712010 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
19712075 TTGGGGTTCTGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGACGTGA
456 TT-GGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * **
19712140 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTG
520 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
19712205 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
585 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
19712270 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
650 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
19712335 AGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAATCG-CAT
715 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-G
* **
19712399 GAACTCCAATGCCGCTAGTCAGGTTCT
779 GAACCCCAATGCCGCCGGTCAGGTTCT
19712426 ATTTCAGACA
Statistics
Matches: 10129, Mismatches: 1115, Indels: 474
0.86 0.10 0.04
Matches are distributed among these distances:
840 7 0.00
841 31 0.00
842 3 0.00
843 1 0.00
844 8 0.00
846 1 0.00
847 67 0.01
848 208 0.02
849 197 0.02
850 30 0.00
851 2 0.00
852 2 0.00
856 110 0.01
857 2 0.00
858 2 0.00
859 2 0.00
860 48 0.00
861 10 0.00
863 1 0.00
864 2 0.00
865 2 0.00
866 3 0.00
869 2 0.00
873 2 0.00
876 5 0.00
877 3 0.00
878 2 0.00
879 3 0.00
880 1347 0.13
881 39 0.00
882 67 0.01
883 479 0.05
884 9 0.00
885 7 0.00
886 109 0.01
887 727 0.07
888 182 0.02
889 437 0.04
890 157 0.02
891 507 0.05
892 702 0.07
893 432 0.04
894 24 0.00
895 215 0.02
896 726 0.07
897 34 0.00
898 288 0.03
899 18 0.00
900 441 0.04
901 477 0.05
902 924 0.09
903 20 0.00
904 162 0.02
905 594 0.06
906 209 0.02
907 1 0.00
908 23 0.00
909 16 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
TTGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
Found at i:19705455 original size:26 final size:26
Alignment explanation
Indices: 19705419--19705471 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19705409 CAAGTCCGAT
* * *
19705419 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
19705445 CTTAGAATGGGAATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
19705471 C
1 C
19705472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:19706357 original size:26 final size:26
Alignment explanation
Indices: 19706321--19706371 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19706311 CCGATCCGAC
*
19706321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
19706347 CTTAGACTGGGAATGAAATCTGTAT
1 CTTAGACTGGGAATGAAATCTGTAT
19706372 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTGTATG
Found at i:19708988 original size:26 final size:26
Alignment explanation
Indices: 19708952--19709004 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19708942 CTACTTCAAC
19708952 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19708978 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19709004 C
1 C
19709005 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19709884 original size:26 final size:26
Alignment explanation
Indices: 19709848--19709900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19709838 CCGATCCGAT
* *
19709848 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19709874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19709900 C
1 C
19709901 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19710777 original size:26 final size:26
Alignment explanation
Indices: 19710748--19710800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19710738 CCGATCCGAT
*
19710748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19710774 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19710800 C
1 C
19710801 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19711696 original size:26 final size:26
Alignment explanation
Indices: 19711644--19711696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19711634 CTGGTTCGAT
*
19711644 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGGATG
* *
19711670 CTTAGACTGGGAATGAACTTCGGATG
1 CTTAGACTGCGAATGAACTCCGGATG
19711696 C
1 C
19711697 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGGATG
Found at i:19716557 original size:26 final size:26
Alignment explanation
Indices: 19716519--19716571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19716509 CTGGTCTGAT
*
19716519 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19716545 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19716571 C
1 C
19716572 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19717830 original size:874 final size:872
Alignment explanation
Indices: 19714045--19718112 Score: 4917
Period size: 898 Copynumber: 4.7 Consensus size: 872
19714035 GCCCACCATG
* * ** * * *
19714045 TGCTGCTGCAACCCTCAGTCCAGTCCAATCTTAGATTGGGAATGAAC-TCCTATTCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * ***
19714109 CCGATGAAACAAGCAGGCAGGCGGGCGGGCGGGCACTACGTTGGCCATAGAGATAAGATGCGCAA
66 CCGACGAAACGAGCAGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
19714174 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTGATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
19714239 TTTTTATGGCTTGCAAATTCATACAATGGACACTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
19714304 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCCTA-ATTTTTTTAAATTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTT
* *
19714368 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGGTCCCTATATTTTTGTTGGCATGCACAAA
324 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAA
*
19714433 AAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19714498 AAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAA
454 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19714563 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCTCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
19714628 TTATGTGCGCACACCCCCC-GGCCCCCCCGATTGCCGGAACCCAAATACTGCC-AGTCAGGTTCT
584 TCATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCT
* * ** * *
19714691 CCGGTGATGCTCTGGTGATGGTGCCCCGACAAAGAAAAAT---G---CGGCAC-T-----A---A
648 CCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCA
* * * * *
19714741 -CATGTGTAGCCGCAACCCTTGGTCTGGTCTGATCTTAGATTGCGAATGAACTCCGTATGCCTAA
713 GCATGTGCAGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * * * * * * *
19714805 GTCAACC--CATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCA-GAGAGGCGGGATACGCAAGAC
778 G--AACCGGAATG-AAC-TGCGT--ATGC-CTAAGTCAACCCACGAAACGAGCG-TGCGC--GAC
* * ** * * *
19714866 G--GAGATCAACCGAGG-CCCCCTCTACGTGCTGCCGATCC
833 GCCAAGACCGGCCG-GGTCCCCCTCTGCGTGCTACAGATCC
* * *
19714904 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
** * * *
19714969 CCGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCAGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *** *
19715034 GCCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGCATATCTTCATATTTCTATGTGCAAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
19715098 TTTTTATGGCTTG----------CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
19715153 GACTGGTTTTCTATTTTTCACGATTTTCAAACCTTTTTGCGGTT-TAGGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTT
* * * *
19715217 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCTTGCACAAA
324 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCAC-AA
* *
19715282 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTGCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19715347 TAAGACACTTTAATGGCTACTGGAAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
453 TAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
19715412 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACTCATCGTAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * *
19715477 ATCATGTGTACACACCCCCCAGGCCCGCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCT
583 ATCATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCT
* ** * * *
19715542 CCGATGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGACACCACCAAATGCCCGAGCAC
648 CCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC-C
* * * *
19715607 AACATGTGCTGCCGCAACCCCCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
712 AGCATGTGCAGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *** * ** ** *
19715672 AGTGAACC--CATGAAATGAGCATGCCGGTGTTCAGCCGGC-CAGAATGGCAG-GATGC-ATAAG
777 A--GAACCGGAATGAACTGCGTATGCCTAAG-TCAACC--CAC-GAAACG-AGCG-TGCGCGACG
* * * * *
19715732 CCAGGGATCGGTCGGGTCCCCCTCTGCGTCCTACCA-ATCT
834 CCA-AGACCGGCCGGGTCCCCCTCTGCGTGCTA-CAGATCC
* * *
19715772 TGCTG-TCGCAACCCTCGGTCCGATCTCATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCA
1 TGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * *
19715836 ACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTATGTCGGCCAGAGAAACGGGATGCGCA
65 ACCGACGAAACGAGCAGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
19715901 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGGC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19715966 ATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
19716031 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * *
19716096 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
324 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAA
19716161 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
19716226 AAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19716291 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACTCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
19716356 TCATGTGTGCACACCCCCCAGGCCCGCCCGATGGCCGGAA-CCCAATGCCGTCGGTCAAGTTCTC
584 TCATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTC
* * ** * *
19716420 TGATGGTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCATCACTTGCCCGAGCCCA
649 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCA
* * * * *
19716485 GTATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTTA
713 GCATGTGCAGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
19716549 G-ACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAGCCGG
778 GAAC-CGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCGT----GCG--C-GAC-G
* * * *
19716613 CCAGAGGGGAGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTCTGCGTGCTGCTGATCT
834 CC--A----A--GA--C-C-GGCC-GGG-T----C----CCCCTCTGCGTGCTACAGATCC
* * * *
19716674 TGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAAC-TCTGTATGCCTAAGCCA
1 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCA
* * * * *
19716738 ACTGACGAAACGAGCA---GGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGATGGGGTGCGCAA
65 ACCGACGAAACGAGCAGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
19716800 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
19716865 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
19716930 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * * *
19716995 CAGAAGGATTTTTGGCCCCAAACTTGGTATACATGATACTTGTATTTTTTTTGGCATGCAC-AAA
325 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAA
* * * * *
19717059 AAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTGAAAAAATTATCCCCATTTG
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
19717124 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
19717189 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
19717254 CATGTGCGCACACCCCACTGGCCCCCCCGACCGCCGGAACCCCAATGCTACCGATCAGGTTCTCT
585 CATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCC
** * * * *
19717319 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGCACATGCGCTAGCCTAG
650 GATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC-AG
* * * * *
19717384 CATGTGCAGCCGCAACCATCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATG-CTTAG
714 CATGTGCAGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
19717448 -ACCGGGAATGAACTTCGTATGGCTAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTAAG-CCG
779 AACC-GGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGACGCCAAGACCG
*
19717510 GCCGGGTCCCCCTCTGCGTGCTATAGATCC
843 GCCGGGTCCCCCTCTGCGTGCTACAGATCC
* *
19717540 TGCTGCTGCCACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTCAA-CCA
1 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCT-AAGCCA
* * *
19717604 ATCGACGAAACAAGAGGGCAGGCGGACGGGCGGGCGAGCACTACGTCAGCCAGAGAGACGGGATG
65 ACCGACGAAAC--GA--GCAGGCGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
*
19717669 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
125 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
19717734 TGCCATTTTTATGGCTTGTAAATTCATACAAT-GTACCCTTAAGCCTTCACGTGAAGTTTCATGG
190 TGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * *
19717798 CAAGACGACTCGTTTTCTATTTTTCTTGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTTAAA
254 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * * *
19717863 TTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGGTCCCTATATTTTTGTTCGCATGC
319 TTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGC
*
19717928 ACATAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
384 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
19717993 CATTTAAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAG
449 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
19718058 TGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
514 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
19718113 CCCCCGATCG
Statistics
Matches: 2783, Mismatches: 322, Indels: 192
0.84 0.10 0.06
Matches are distributed among these distances:
847 2 0.00
849 149 0.05
850 201 0.07
851 69 0.02
857 3 0.00
858 1 0.00
859 92 0.03
860 83 0.03
863 3 0.00
864 3 0.00
865 3 0.00
866 81 0.03
867 10 0.00
868 228 0.08
869 56 0.02
870 5 0.00
872 3 0.00
873 12 0.00
874 278 0.10
875 179 0.06
876 21 0.01
877 134 0.05
878 227 0.08
879 154 0.06
881 4 0.00
883 2 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 2 0.00
890 2 0.00
891 1 0.00
892 2 0.00
893 3 0.00
894 4 0.00
897 222 0.08
898 452 0.16
901 3 0.00
902 85 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (872 bp):
TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
ATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAGCA
TGTGCAGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAA
CCGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGACGCCAAGACCGGCC
GGGTCCCCCTCTGCGTGCTACAGATCC
Found at i:19721757 original size:26 final size:26
Alignment explanation
Indices: 19721728--19721780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721718 CCGATCCGAT
*
19721728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
19721754 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
19721780 C
1 C
19721781 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:19722654 original size:26 final size:26
Alignment explanation
Indices: 19722625--19722677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19722615 CCGGTCTGAT
19722625 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19722651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19722677 C
1 C
19722678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19723333 original size:893 final size:887
Alignment explanation
Indices: 19720854--19728693 Score: 9708
Period size: 897 Copynumber: 8.8 Consensus size: 887
19720844 CCGGTCTGAT
* *
19720854 CTTAGACTGGGAATGAACTCAGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19720919 CGGCCAGAGGGGCGGGATGCGA-AAGCTGGGGATCGGCCGGGTCCCCCTTTGCGTGTTGCCGATC
66 CGGCCAGAGGGGCGGGATGC-ACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
19720983 CTACTACCGCAACCCTTGGTCCGGTCCGATCTTAGAATAGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
** * * * * *
19721048 ATTGATGAAATGAGCGGGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGTAAGCC
195 ACCGACG-AA--A-----CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
19721113 GAGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCGAATGCCATTT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
* *
19721178 GTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
317 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
19721243 TCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGG
382 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
19721308 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTTGTTGGCATGCACAAAACAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
19721373 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTCAAAAAAGTGTCCCCATTTCAGA
512 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
19721438 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTC
577 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** *
19721503 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACGAGCACCCATCGCACATCAT
642 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
19721568 CTGTGCACACCTCTTCC-GACCCCCCGATCGTCGAAACCCAAATGCCGTAGGTCAAGTTCTCCGG
707 GTGCGCACACC-C--CCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCA-GTCAGGTTCTCCGG
* * * * * * *
19721632 TGACGCTTCGGCGATGGTGCCTCGAAGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCA
768 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
** * *
19721697 TGTGCTGCCATAAACCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
833 TGTGCTGCCGCAACCCTCA-TCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19721754 CTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19721819 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGATCGGGTCCCCTTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * *
19721884 CTACTGCCGCAACCCTTGGTCTAGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * *
19721949 ACCGACGAAATGAGCGGGTGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
195 ACCGACGAAACGAGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ** *
19722014 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCTAATGCCATTTTTAT
256 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* * * *
19722079 GGCTTTTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACCCGT
321 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
19722144 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAGTTTTGAAAATTTTTTCGGGAGG
386 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
19722209 AGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCA
451 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
19722274 GCTAAAAACTCTAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
516 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
19722339 TTAATGGCTACTGGCAGCACACCTGTAAAATCACAAATGCTCTTTAAGGGGTTGTGAGTTCTCGA
581 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
19722404 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
646 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
19722469 GCACACCCCCTTGGCCCCCCTGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCAATG
711 GCACACCCCC-TGGCCCCCC-GATCGTCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGGCGATG
*
19722534 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGC
773 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*** *
19722599 TATTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
838 TGCCGCAACCCTC-ATCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* *
19722651 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19722716 CAGCCAGAGGGGCGGGATGCACTAGTCGGGGATCGATCGGATCCCCCTCTGGGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * *
19722781 TGCTGCCACAACCCTTGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
19722846 CCGACGAAACAAGCAGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
196 CCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
19722911 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTCTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
* *
19722976 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTGTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
19723041 ATTTTTCACGATTTTCCAAAACTTTTTGCGATTTGGGATTTTTTAAAATTTTTTCGAAAGGA-TT
391 ATTTTTCACGATTTT-CGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
** *
19723105 TTTCCCCACAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
455 TTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * *
19723170 AAAAACTCAAAGTGTACACGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGGCACTTTA
519 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
19723235 ATGGCTAC-GGACAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
584 ATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
19723299 TTTGATCAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
648 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * ** *
19723364 ACACCCCCTGGAACCCCCGATCGCCGGAACCCCAAT---GCAGTC-GG---T-C-AAG-TTCTCC
713 ACACCCCCTGG-CCCCCCGATCGTCGGAACCCCAATGCCGCAGTCAGGTTCTCCGGCGATGCTCC
* * * **
19723419 GACGATGGTGCCCTGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATC
777 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
19723484 GCAACCCT--T--GGTC---C----A----G--T---CT--G-AT-
842 GCAACCCTCATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19723506 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCGACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * **
19723571 CGACCATAGGGGCGGGATGCGTAAGCCGAGGAT-GGCCAGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
19723635 TGCTGCCACAACCC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * *
19723699 ACCGACGAAATGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
195 ACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
***
19723764 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
260 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
* * * * * *
19723829 TTTAAATTCATACAATGGTCCCTTAAGCCTCCACATGAAGTTTCATGGCAAGATGATTCGTTTTT
325 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** *
19723894 TATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGTAGTT
390 TATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
19723959 TTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCT
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * ** * * * *
19724024 AAAAACTCGAAATGTACAAGATTTTTTTTTTCTCATGTCAAAAAAGTGTCCCCATTTCAAACATT
519 AAAAACTCGAAGTGTACAAGA--TTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
19724089 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
581 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
19724154 GGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGTGC
646 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
19724219 GCACAACACCACCTGGCCCCCCTAATCGTCGGAACCCCAATGCCGCCGATTAGGTTCTCCGACGA
711 GCAC-AC-CC-CCTGGCCCCCC-GATCGTCGGAACCCCAATGCCGCAG-TCAGGTTCTCCGGCGA
* *
19724284 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCATGT
771 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
19724349 GCTGCCGTAACCCTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATG
836 GCTGCCGCAACCCTCA-TCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19724403 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * **
19724468 CGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGATCAGGTCCCCCTCTATGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * ** *
19724533 TGCTACCGCAACCC-TCAGTCTGGTC-GATCTTAGACTGGGAATGAACACCATATGCCTAAGCAA
131 TGCTGCCGCAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * *
19724596 ACCGATGAAACAAGCGGCCGAGTGGGCAGGCGGGCAGTACGCCGGCCAGAGAGATGGGATGCGCA
195 ACCGACG--A-AA-----CGA----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
19724661 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCGATG
248 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATG
* * *
19724724 CCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCGA
311 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
19724789 GACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTT
376 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
19724854 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTATTGGCATGCACA
441 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
19724919 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
506 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
19724984 TTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
571 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
19725048 GAGTTCTCGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
636 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * *
19725113 TATCATGTGCGCACACCCCC-GGCCCCCCTGATCACCGGAACCCCAAAGCCCCCGGTCAGGTTCT
701 CATCATGTGCGCACACCCCCTGGCCCCCC-GATCGTCGGAACCCCAATG-CCGCAGTCAGGTTCT
** ** *
19725177 -C--C---G----G-CGATGGTGCCCCGGTGAAGAAAAATGCCGCACCAGCACAAGCCCGAGCCC
764 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * *
19725231 AGCATGTGCTACCGCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCCGTATG
829 AGCATGTGCTGCCGCAACCCTC-ATCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19725292 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19725357 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * **
19725422 TACTGCAGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * ** *
19725487 CCGACGAAACGAGCGGGCAGGCGGGCACTACGCAGGCCAGAGTGATTGAATGCGCAAGCCGTGGA
196 CCGACGAAACGAGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
19725552 TCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
* * *
19725617 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACTCGTT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
19725682 TTTTATTTTTCACGTTTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGA
387 TTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
19725747 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAG
452 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
** * * *
19725811 CTAAAAACTTTAGGCGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTT
517 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
19725876 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
582 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
19725941 GTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCG
647 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
19726006 CACACCACCC-GGCCCCCCGGTCATAGGAACCCCAATGCCGCTGATCAGGTTCTCCGGCGATGCT
712 CACACC-CCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCAG-TCAGGTTCTCCGGCGATGCT
* * * *
19726070 CCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
775 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
19726135 CCACAACCCTCGATCTGGTACGATCTTAGATTAGGAATGAACTCCGTATG
840 CCGCAACCCTC-ATCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19726185 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19726250 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTTTGTGTACTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
19726315 TGCTACTGTAACCC-TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * *
19726379 ATCGACGAAATGAGCGAGCGGCGGAAGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
195 ACCGACG-AA--A-CGAGC-G-GG--CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
19726444 GTGGATCGCTAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
*
19726509 TTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGAC
317 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
19726574 TCGTTTTCTATTTTTCACAACTTTCAAAAATTTTTGCTGTTTGGGATTTTTTAAAATTTTTTTGG
382 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
19726639 AGGGAGTTTTGGTCCCAATCTTGGTAGAACGTGATACTTGTATTTTTGTTGGCATGCAAAAAAAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAA
*
19726704 AATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGT-CCCATTTCA
510 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
19726767 GACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
575 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** *
19726832 TCTCAAGGTTTAATGAGGGATAGATGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
640 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
19726897 ATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATG-C-CA-TC-GG---T-CAG
705 ATGTGCGCACA-CCCCCTGG-CCCCCCGATCGTCGGAACCCCAATGCCGCAGTCAGGTTCTCCGG
* * * * * **
19726954 -G-TTCTCCGACGATGGTGCCCC-AGCGAAGAAATATGTGGCACTAGGACATGCCTGAGTGCAGC
768 CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* *
19727016 ATCTGCTGCCGCAA-CC-C-T-C-G--G-TC-----C---G---G---TCCG-A-A
832 ATGTGCTGCCGCAACCCTCATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19727048 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
19727113 CGGCCAGTGGGGCGGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
19727178 TGCTGCTGCAACCC-TCAGTCTGGTCTGATCTTAGA-TGGGGAAAGTACTCTGTATGCCTAAGCC
131 TGCTGCCGCAACCCTTGA-TCTGGTCTGATCTTAGACT-GGGAATGAACTCTGTATGCCTAAGCC
** * *
19727241 AACCGACGAAACGAGCGGGCGGGCAGGCACTACGTTGACGAGAGAGACGGGATGCGCAAGCCGTG
194 AACCGACGAAACGAGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
19727306 GATCGATAGGGTGGTGGGTGGGTTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
255 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
*
19727371 TGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
320 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
19727436 TTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
385 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
19727501 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGTA-AAAAAAATTC
450 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
19727565 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
515 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
19727630 TTTAATGGCTACTGGCAGCAAACCTATAAGATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCA
580 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
19727695 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
645 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
19727760 CGCACACCCCCCCGGCCCCCCGATCG-CTGGAAAGCCAATGTCGTC-GATCAGGTTCTCCGACGA
710 CGCACA-CCCCCTGGCCCCCCGATCGTC-GGAACCCCAATGCCG-CAG-TCAGGTTCTCCGGCGA
** * *
19727823 TGCTCCGGTGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
771 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * *
19727888 GCTGCCGTAACCCTTGGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
836 GCTGCCGCAACCC-TCATCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
*** * * * *
19727942 CTTAGACTAAAAATGAACTCCGTATGCCAAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
19728007 CGGCTAGAGGGGCAGGATGCGCAAGCCATGGATTGGCTGGGT--CCC-CT---T-CTGT-G----
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * ** *
19728060 TGCTACCACAACCCTCGATCCGATC-CATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAA
131 TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * *
19728124 CCGACAAAACGAGCGGGCGGGCACTATGCCGGGCCAGAGAGACGGGATTGC-C-AGCCATGGATC
196 CCGACGAAACGAGCGGGCGGGCACTACGCC-GGCCAGAGAGACGGGA-TGCGCAAGCCGTGGATC
*
19728187 GATAGGGTTGGTAGGTGGGTTTAGGCACATCTTC-TATTTCTA--TGCCAATGCCATTTTTAAGG
259 GATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
* * * *
19728249 CTTGTAAATTCATACAATGGTTCCTTCAAGCCTTCACAGTTGAGGTTTCCATGGCAAGATGACTT
323 CTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCAC-G-TGAAGTTT-CATGGCAAGACGACTC
* *
19728314 GTTTTTCTA-ATTTCACGATTTTCACAAAACTTTTTGCGCTGTTCGGGGA-TTTTTAAAATTTTT
384 G-TTTTCTATTTTTCACGATTTT--CGAAACTTTTTGCG--GTTC-GGGATTTTTTAAAATTTTT
* *
19728377 TCGGAAGGGAGGTTTTGGGGCCCCAAACTTGGGTAGATGTGATCCTTGTA-TTTT-TTGGATAAT
443 TCGGAA-GGA-GTTTT--GGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGG--CAT
* * * *
19728440 GTA-AAAAAAATTCAGCTAAACACTCAAAGTGTACAAAGATTTTGGTG-CCATTCGAAAAAAGTG
501 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AAGATTTT-GTGACCATTTGAAAAAAGTG
* * * * *
19728503 TCCTCATTTCAGACACCTTTAATTGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTCAG
564 TCCCCATTTCAGACA-CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
19728568 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGT-TCAGCAC
628 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
19728632 CCATCTCACATCATGTGCGCACACCCCCCCGATG-CCCCCGATCGTCGGAACCCCAATGCCGC
693 CCATCGCACATCATGTGCGCACA-CCCCCTG--GCCCCCCGATCGTCGGAACCCCAATGCCGC
19728694 CGGTCAGAGA
Statistics
Matches: 6090, Mismatches: 658, Indels: 395
0.85 0.09 0.06
Matches are distributed among these distances:
853 64 0.01
854 327 0.05
855 86 0.01
856 18 0.00
857 224 0.04
858 181 0.03
859 249 0.04
860 23 0.00
861 2 0.00
862 6 0.00
863 181 0.03
864 3 0.00
865 7 0.00
866 1 0.00
867 1 0.00
868 64 0.01
869 4 0.00
870 2 0.00
871 71 0.01
872 2 0.00
873 1 0.00
874 2 0.00
875 44 0.01
876 17 0.00
877 36 0.01
878 51 0.01
879 32 0.01
880 9 0.00
881 254 0.04
882 397 0.07
883 40 0.01
884 8 0.00
885 7 0.00
886 6 0.00
887 25 0.00
888 63 0.01
889 365 0.06
890 165 0.03
891 6 0.00
892 216 0.04
893 566 0.09
894 94 0.02
895 5 0.00
896 113 0.02
897 1058 0.17
898 225 0.04
899 53 0.01
900 155 0.03
901 93 0.02
902 2 0.00
903 2 0.00
904 81 0.01
905 75 0.01
906 6 0.00
908 51 0.01
909 251 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCAGTCAGGTTCTCCGGCGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19724415 original size:26 final size:26
Alignment explanation
Indices: 19724377--19724429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19724367 CCGGTCCAAT
* * *
19724377 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19724403 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19724429 C
1 C
19724430 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19725302 original size:26 final size:26
Alignment explanation
Indices: 19725266--19725318 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19725256 CTGGTACGAT
19725266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19725292 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19725318 C
1 C
19725319 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19726197 original size:26 final size:26
Alignment explanation
Indices: 19726159--19726211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726149 CTGGTACGAT
*
19726159 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19726185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19726211 C
1 C
19726212 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19726622 original size:897 final size:893
Alignment explanation
Indices: 19723506--19728700 Score: 6569
Period size: 882 Copynumber: 5.9 Consensus size: 893
19723496 CCAGTCTGAT
* * * *
19723506 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCGACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
19723571 CGACCATAGGGGCGGGATGCGTAAGCCGAGGAT-GGCCAGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* *
19723635 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19723700 CCGACGAAATGAGC-G-GGC--GGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGA
196 CCGACGAAACGAGCGGCGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
***
19723761 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
* * * * *
19723826 GCTTTTAAATTCATACAATGGTCCCTTAAGCCTCCACATGAAGTTTCATGGCAAGATGATTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
19723891 TTTTATTTTTCACGATTTTTGAAACTTTTT-ATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGT
391 TTCTATTTTTCACGATTTTCAAAACTTTTTGCT-GTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
19723955 AGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTC
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTATTGGCATGCA-AAAAAAATTC
* * ** * * *
19724020 AGCTAAAAACTCGAAATGTACAAGATTTTTTTTTTCTCATGTCAAAAAAGTGTCCCCATTTCAAA
518 AGCTAAAAACTCGAAGTGTACAAGA--TTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGA
* *
19724085 CATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
19724150 TCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCAT
645 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
19724215 GTGCGCACAACACCACCTGGCCCCCCTAATCGTCGGAACCCCAATGCCGCCGATTAGGTTCTCCG
710 GTGCGCAC-AC-CCCCCCGGCCCCCC-GATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
* * * *
19724280 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGC
772 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
19724345 ATGTGCTGCCGTAACCCTC-AGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATG
837 ATGTGCTGCCGCAACCCTCGA-TCTGGT-CGATCTTAGATTGGGAATGAACTCCGTATG
* * *
19724403 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
19724468 CGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGATCAGGTCCCCCTCTATGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* * *
19724533 TGCTACCGCAACCCTCAGTCTGGTC-GATCTTAGACTGGGAATGAACACCATATGCCTAAGCAAA
131 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19724597 CCGATGAAACAAGCGGCCGAGTGGGCAGGCGGGCAGTACGCCGGCCAGAGAGATGGGATGCGCAA
196 CCGACGAAACGAGCGG-C-----GGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
19724662 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCGATGC
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGC
* * *
19724725 CGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCGAG
316 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
19724790 ACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTT
*
19724855 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTATTGGCATGCACAA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA-AA
19724920 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19724985 TGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19725049 AGTTCTCGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAT
640 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19725114 ATCATGTGCGCACA--CCCCCGGCCCCCCTGATCACCGGAACCCCAAAGCCCCCGGTCAGGTTCT
705 ATCATGTGCGCACACCCCCCCGGCCCCCC-GATCATCGGAACCCCAATGCCGCCGATCAGGTTCT
* * *
19725177 -C--C---G----G-CGATGGTGCCCCGGTGAAGAAAAATGCCGCACCAGCACAAGCCCGAGCCC
769 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
19725231 AGCATGTGCTACCGCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCCGTATG
834 AGCATGTGCTGCCGCAACCCTCGATCTGGT-CGATCTTAGATTGGGAATGAACTCCGTATG
* * *
19725292 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19725357 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* * * ** *
19725422 TACTGCAGCAACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
19725486 ACCGACGAAACGAGC-G-GGCAGGCGGGCACTACGCAGGCCAGAGTGATTGAATGCGCAAGCCGT
195 ACCGACGAAACGAGCGGCGGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* **
19725549 GGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
* * *
19725614 ATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** * *
19725679 GTTTTTTATTTTTCACGTTTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAA
388 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
19725744 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTC
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAATTC
** * * *
19725809 AGCTAAAAACTTTAGGCGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
19725874 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
19725939 AGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
19726004 CGCACA-CCACCCGGCCCCCCGGTCATAGGAACCCCAATGCCGCTGATCAGGTTCTCCGGCGATG
713 CGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
* *
19726068 CTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
778 CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
19726133 TGCCACAACCCTCGATCTGGTACGATCTTAGATTAGGAATGAACTCCGTATG
843 TGCCGCAACCCTCGATCTGGT-CGATCTTAGATTGGGAATGAACTCCGTATG
* * *
19726185 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
19726250 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTTTGTGTACTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* * * * *
19726315 TGCTACTGTAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19726380 TCGACGAAATGAGCGAGCGGCGGAAGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTG
196 CCGACGAAACGAGCG-GCGGC-G--GGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
19726445 TGGATCGCTAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
*
19726510 TATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
19726575 CGTTTTCTATTTTTCACAACTTTCAAAAATTTTTGCTGTTTGGGATTTTTTAAAATTTTTTTGGA
387 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
19726640 GGGAGTTTTGGTCCCAATCTTGGTAGAACGTGATACTTGTATTTTTGTTGGCATGCAAAAAAAAA
452 AGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTATTGGCATGC--AAAAAAA
*
19726705 ATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGT-CCCATTTCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
19726768 ACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
19726833 CTCAAGGTTTAATGAGGGATAGATGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
644 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
19726898 TGTGTGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAAT---GCC-ATC-GG---T-C-A
709 TGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGA
* * * * * * * * **
19726953 -GGTTCTCCGACGATGGTGCCCCAGCGAAGAAATATGTGGCACTAGGACATGCCTGAGTGCAGCA
773 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
19727017 TCTGCTGCCGCAA-CC-C--TC-GGTC---C---------G---G---TCCG-A-A
838 TGTGCTGCCGCAACCCTCGATCTGGTCGATCTTAGATTGGGAATGAACTCCGTATG
* *
19727048 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19727113 CGGCCAGTGGGGCGGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* * * * *
19727178 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGA-TGGGGAAAGTACTCTGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
** * *
19727242 ACCGACGAAACGAGC-G-GGCGGGCAGGCACTACGTTGACGAGAGAGACGGGATGCGCAAGCCGT
195 ACCGACGAAACGAGCGGCGGCGGG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
19727305 GGATCGATAGGGTGGTGGGTGGGTTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
*
19727370 ATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
19727435 GTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
388 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
19727500 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGTAAAAAAAATTC
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAATTC
19727565 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
19727630 TTTAATGGCTACTGGCAGCAAACCTATAAGATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
19727695 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
19727760 CGCACACCCCCCCGGCCCCCCGATC-GCTGGAAAGCCAATGTCGTCGATCAGGTTCTCCGACGAT
713 CGCACACCCCCCCGGCCCCCCGATCATC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGACGAT
** **
19727824 GCTCCGGTGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
777 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
19727889 CTGCCGTAACCCTTGGT-TCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
842 CTGCCGCAACCCTCGATCT-GGTC-GATCTTAGATTGGGAATGAACTCCGTATG
*** * * * *
19727942 CTTAGACTAAAAATGAACTCCGTATGCCAAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
19728007 CGGCTAGAGGGGCAGGATGCGCAAGCCATGGATTGGCTGGGT--CCC-C--T-T-CTGT-G----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
* * * * * *
19728060 TGCTACCACAACCCTC-GATCCGATC-CATCTTAGACTGGGAATGAACTCCATATGCATAAGCCA
131 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19728123 ACCGACAAAACGAGC-G-GGC--GGGCACTATGCCGGGCCAGAGAGACGGGATTGC-C-AGCCAT
195 ACCGACGAAACGAGCGGCGGCGGGGGCACTACGCC-GGCCAGAGAGACGGGA-TGCGCAAGCCGT
19728182 GGATCGATAGGGTTGGTAGGTGGGTTTAGGCACATCTTC-TATTTCTA--TGCCAATGCCATTTT
258 GGATCGATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* * * *
19728244 TAAGGCTTGTAAATTCATACAATGGTTCCTTCAAGCCTTCACAGTTGAGGTTTCCATGGCAAGAT
322 TATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCAC-G-TGAAGTTT-CATGGCAAGAC
* *
19728309 GACTTGTTTTTCTA-ATTTCACGATTTTCACAAAACTTTTTGCGCTGTTCGGGGA-TTTTTAAAA
383 GACTCG-TTTTCTATTTTTCACGATTTT--CAAAACTTTTT--GCTGTTC-GGGATTTTTTAAAA
*
19728372 TTTTTTCGGAAGGGAGGTTTTGGGGCCCCAAACTTGGGTAGATGTGATCCTTGTA-TTTT-TTGG
442 TTTTTTCGGAA-GGA-GTTTT--GGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTATTGG
* * * * *
19728435 ATAATGTAAAAAAAATTCAGCTAAACACTCAAAGTGTACAAAGATTTTGGTG-CCATTCGAAAAA
502 --CATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AAGATTTT-GTGACCATTTGAAAAA
* * *
19728499 AGTGTCCTCATTTCAGACACCTTTAATTGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCT
563 AGTGTCCCCATTTCAGACA-CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
19728564 TCAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGT-TCA
627 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
19728628 GCACCCATCTCACATCATGTGCGCACACCCCCCCGATG-CCCCCGATCGTCGGAACCCCAATGCC
692 GCACCCATCGCACATCATGTGCGCACACCCCCCCG--GCCCCCCGATCATCGGAACCCCAATGCC
*
19728692 GCCGGTCAG
755 GCCGATCAG
19728701 AGAGACGGGA
Statistics
Matches: 3774, Mismatches: 407, Indels: 241
0.85 0.09 0.05
Matches are distributed among these distances:
856 11 0.00
857 69 0.02
858 175 0.05
859 236 0.06
860 5 0.00
861 4 0.00
862 3 0.00
863 185 0.05
864 1 0.00
865 5 0.00
866 1 0.00
867 1 0.00
868 64 0.02
869 2 0.00
871 1 0.00
872 1 0.00
873 4 0.00
875 44 0.01
876 10 0.00
877 35 0.01
878 46 0.01
879 30 0.01
880 8 0.00
881 176 0.05
882 402 0.11
883 40 0.01
884 9 0.00
885 8 0.00
886 6 0.00
887 21 0.01
888 57 0.02
889 368 0.10
890 174 0.05
891 4 0.00
892 9 0.00
893 288 0.08
894 91 0.02
895 3 0.00
896 7 0.00
897 368 0.10
898 220 0.06
899 52 0.01
900 69 0.02
903 1 0.00
904 81 0.02
905 76 0.02
906 6 0.00
908 51 0.01
909 246 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGATCTGGTCGATCTTAGATTGGGAATGAACTCCGTATG
Found at i:19729377 original size:26 final size:26
Alignment explanation
Indices: 19729325--19729377 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19729315 CTGGTCCAAT
* *
19729325 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
19729351 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
19729377 C
1 C
19729378 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19730251 original size:26 final size:26
Alignment explanation
Indices: 19730213--19730264 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19730203 CTGGTCCGAT
* *
19730213 CTTAAACTAGGAATGGACTCCATATG
1 CTTAAACCAGGAATGAACTCCATATG
* *
19730239 CTTAAACCGGGAATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCATATG
19730265 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAAACCAGGAATGAACTCCATATG
Found at i:19731150 original size:25 final size:26
Alignment explanation
Indices: 19731111--19731159 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
19731101 GTTCGATCTT
19731111 AGACTGGGAACGAACTCCGTATGCTC
1 AGACTGGGAACGAACTCCGTATGCTC
*
19731137 AGACT-GGAATGAACTCCGTATGC
1 AGACTGGGAACGAACTCCGTATGC
19731160 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (26 bp):
AGACTGGGAACGAACTCCGTATGCTC
Found at i:19732761 original size:888 final size:890
Alignment explanation
Indices: 19728691--19733943 Score: 7065
Period size: 890 Copynumber: 5.9 Consensus size: 890
19728681 ACCCCAATGC
* *
19728691 CGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
19728756 TCTTCATATTTCTATGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAGG
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * **
19728821 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTCAAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * **
19728886 GCGGTTCGACATTTTTTAAAATTTTTTCGGAAGGAGTTATGGCATCAAACTTGGTAGACGTGATC
196 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
19728951 CTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
19729016 ACCATTTGAAAAAAGTATCCCCATTTCGGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
19729081 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * *
19729146 GGCCAAATACCAGCACCCATTGCACATTATGTGCGCACACCCCCCTCCTGGCCCCTCCTATCG-T
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-CC-GGCCCCCCCGATCGCT
* * * * * * *
19729210 AGGAACACCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT--TCAGCGAAGAAAAATGCGACACC
519 -GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACC
* * * * *
19729273 AGCACATGCCCGAGCCCAGCATGTGTTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGTGAA
583 AGCACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
** * * *
19729338 TGAACTCCGTATGCTTAGATTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACGAGCCT
648 TGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* *
19729403 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGC
713 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG-
* * * * *
19729468 T-TGCTGCCGATCCTACTGCCGTAACCCTCGA-TCTGG-TCTGATCTTAGACTGGGAATGAACTC
777 TATGCTGCCGATCCTGCTACTGCAACCCTCGATTCCGGTTC-GATCTTAGACTGGGAATGAACTC
* * *
19729530 CGTATGCCTAAGCCAACCGACGAAATGA----GTGGGCGGGTGGGCACTA
841 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
**
19729576 CGCCGATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-GGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * ** * *
19729640 TCTTCAAATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAACGGTCCCTTAAG
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
19729705 CCTTCACGTGAAGTTTCATGCCAAGATGACTCGTTTTCTATTTTTCATGATTTTTTGAAACTATT
131 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTT
* * * * * *
19729770 TGCGGTCCGAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCTCAAAACTTGGTAGACATGAT
195 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19729835 CCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
** *
19729900 GACCATTTGAAAAAAGTGTCCCCATTTTGGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
19729965 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * **
19730030 GGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCCTGGCCCCTCTTATCGC
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-CC-GGCCCCCCCGATCGC
* * * * **
19730095 AGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCTCCGTGAAGAAAAATATGGCAC
518 TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCC-CCGCGAAGAAAAATGCGGCAC
* * * * *
19730160 CAGCACATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTCAGTCTGGTCCGATCTTAAACTAGGA
582 CAGCACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * * * *
19730225 ATGGACTCCATATGCTTAAACCGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCG
647 ATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
19730290 TGCGGGCGCTCAGCCGACCTGAGGGGCGGGATGCTCAAGCCGAGGTTTGG-CTGGGTCCCCTTCT
712 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCT
* * * *
19730354 GCATGCTACCGATCCTGCTACTACAACCCTCGA-TCCAG-TCTGATCTTAGACTGGGAATGAACT
776 GTATGCTGCCGATCCTGCTACTGCAACCCTCGATTCCGGTTC-GATCTTAGACTGGGAATGAACT
** *
19730417 TTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGTGCAGGAACTA
840 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G--GGCACTA
*
19730472 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
19730537 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAG
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
19730602 CATTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
19730667 ACGGTTCGGGATTTTTTAAAATGTTTTT-GGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGAT
196 GCGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19730731 CCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19730796 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTC-GCAAACCTGTAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAA
* * * *
19730860 ATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGATGAGAGATAGGGAGCCAATATA
389 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
19730925 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCTCCGACCCCCCCGATCGC
454 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CACCCCCCGGCCCCCCCGATCGC
* * *
19730990 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGGTGCCCCGACAAAGAAAAATGCGGCAC
518 TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCAC
* * * *
19731055 CAGCACATGCCCGAGACTAGAATGTGCTGTCAG-AACCCTCGGTCTGGTTCGATCTTAGACTGGG
582 CAGCACATGCCCGAGCCCAGCATGTGCTG-CAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * *
19731119 AACGAACTCCGTATGCTCAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT
646 AATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* *
19731183 GTGTGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGC-A-------A---GTCGGGTCCCCCTCT
711 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * *
19731237 GCGA-GCTGCCGATCTTGCTACTGCAACCCTC-AGTT-CGGTCCAATCTTAGACTGGGAACGAAC
776 G-TATGCTGCCGATCCTGCTACTGCAACCCTCGA-TTCCGGTTCGATCTTAGACTGGGAATGAAC
* * *
19731299 TCCGTATGCCTTAGCCAACCGACGAAAC-AGCGGGTGGGCGGGCGTGCACTA
839 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
* * *
19731350 CGTCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
19731415 TCTTCATATTTCTGCGTGCCAAAGCCATTTTAATGGCTTGTAAATTCATACAATGG-CCTCTTAA
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAA
* *
19731479 GCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
130 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* *
19731544 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGAT
195 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
19731609 CC-TGTATTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19731673 GACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
19731738 TCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
19731803 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCCGATCG-TC
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCT-
* * *
19731865 GGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGTTGGTGCCCCGACGAAGAAAAATACGGCACC
519 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACC
* * * * *
19731930 AGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTGAGACTGTGAA
583 AGCACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * * *
19731995 TGAACTCCGTATGCTTAGTCAGGGAATGAAATCTGTATCCCTAAGTCAACCCATGAAACAAGCGT
648 TGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
19732060 ACGGGCACTCAGCCGACTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGT
713 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGT
* * * * *
19732125 ATGCTGCCGATCATGCTACTGCAACCCTC-ATTCCGGTTCAATCTTAGACTAGTAATGAACTCCT
778 ATGCTGCCGATCCTGCTACTGCAACCCTCGATTCCGGTTCGATCTTAGACTGGGAATGAACTCCG
* *
19732189 TATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCGCTA
843 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
** * * *
19732237 CATCGGCCAGACAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGATAGGTGGGTTTAGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
19732302 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAG
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
19732367 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
19732432 GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACCTT-TTAGACGTGAT
196 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGAT
*
19732496 CCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACAT-GAAGTGTACAAGATTTTG
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTG
* *
19732560 TGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
324 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19732625 ATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
389 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
19732690 AGGGCCAAGTACCAGCACCCATTGCACATCACGTGCG-A-ACACCCCCCGGCTCCTCCGATCGCT
454 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCT
* * *
19732753 GGAACCCCAATGCCGTCGGTCAGGTTCTCGGATGATGCTCCGGCGATGGTGCCCTGGCAAAGAAA
519 GGAACCCCAATGCCGTCGGTCA-------GG-T--T-CTCCGACGATGGTGCCC-CGCGAAGAAA
* *
19732818 AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCTGGTCCGATCT
572 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCT
* * *
19732883 TAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCAC
637 TAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
19732948 GAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGATCGGG
702 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * ** * ** * * * *
19733013 TCCCCCTATGTGTACTGCCTATTCTATTGCCACAACCTTCTATT-CGGTCCGATCTTAGACTAGG
767 TCCCCCTCTGTATGCTGCCGATCCTGCTACTGCAACCCTCGATTCCGGTTCGATCTTAGACTGGG
* *
19733077 AATGAACTCCGTATGCCTAAGCCAACTGAC-AAA--A-----CGAGCGGGCGGGCACTA
832 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
* * * *
19733128 CGCCGGCCAAAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
19733193 TCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAT
66 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
19733258 CCTTCACATTAAGTTTCATGGCAAGATGACTTG-TTTCTATTTTTCACGATTTTTGAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* *
19733322 GTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
19733387 CTTGTATTTTTTTTGGGACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
19733452 ACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
19733517 CTCGAATGCTCTTTAAGGGGGTGTG-GCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
391 CTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
19733581 GGGCCAAGTACCAGCACCCATCGCACATCACGTGCG-A-ACACCCCCCGGCTCCCCCGATCGCTG
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCTG
* * *
19733644 GAACCCCATTGCCGTCGATCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAA
520 GAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCC-CGCGAAGAAAA
* ** * * *
19733709 GTGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAATAACCCTCGGTCTGGTCTGATCTT
573 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCTT
* * * * *
19733774 ATACTGAGAATGAACTACGTAAGCTTAGACTA-GGAATGAACTCCGTATGTCTAAGTCAACCCAC
638 AGACTGGGAATGAACTCCGTATGCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
19733838 GAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGGTCGGT
702 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * *
19733903 TCCCCCTCTGCATGCTGCTGATCCTGCTACCGCAACCCTCG
767 TCCCCCTCTGTATGCTGCCGATCCTGCTACTGCAACCCTCG
19733944 GTCTACTCCA
Statistics
Matches: 3877, Mismatches: 411, Indels: 155
0.87 0.09 0.03
Matches are distributed among these distances:
873 2 0.00
874 150 0.04
875 67 0.02
876 2 0.00
877 222 0.06
878 242 0.06
879 2 0.00
880 3 0.00
882 18 0.00
883 86 0.02
884 112 0.03
885 405 0.10
886 90 0.02
887 257 0.07
888 523 0.13
889 7 0.00
890 566 0.15
891 161 0.04
892 8 0.00
893 1 0.00
894 75 0.02
895 136 0.04
896 349 0.09
897 121 0.03
898 4 0.00
899 264 0.07
900 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCTGG
AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTATG
CTGCCGATCCTGCTACTGCAACCCTCGATTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
Found at i:19732910 original size:26 final size:26
Alignment explanation
Indices: 19732881--19732930 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19732871 CTGGTCCGAT
19732881 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
19732907 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19732931 TGCCTAGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:19734656 original size:747 final size:752
Alignment explanation
Indices: 19733208--19734660 Score: 1967
Period size: 747 Copynumber: 1.9 Consensus size: 752
19733198 ATATTTTTGC
* * *
19733208 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACATTAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTT
* * * ** *
19733273 TCATGGCAAGATGACTTGTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTT
66 TCATGGCAAGACGACTCGTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCCAGATTTTT
*
19733338 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
131 TAAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
* *
19733403 GACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
196 CACGCAAAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
19733468 GTCCCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAA
261 GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
19733533 GGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
326 GGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
19733598 CCATCGCACATCACGTGCGAACACCCCCCGGCTCCCCCGATCGCTGGAACCCCATTGCCGTCGAT
391 CCATCGCACATCAC-TGCG---A--CCCCGGCTCCCCCGATCGCCGGAACCCCAATG-CGTCGAT
* * * * * *
19733663 CAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAGTGTAGCACCAGCACATGC
449 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGC
* * * ** *
19733728 CCGAGCCCAGCATGTGCTACAATAACCCTCGGTCTGGTCTGATCTTATACTGAGAATGAACTACG
514 CCGAGCCCAGCATGGGCTACAACAACCATCGGTCTGGTCCAATCTTAGACTGAGAATGAACTACG
*
19733793 TAAGCTTAGACTAGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCT
579 TAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCT
* *
19733858 CAGCCGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGGTCGGTTCCCCCTCTGCATGCTGCTG
644 CAGCCGGCCAGAGGGGCGGGATGCGCAAACCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCTG
19733923 ATCCTGCTACCGCAACCCTCGGTCTACTCCAATCCTATTTCTAT
709 ATCCTGCTACCGCAACCCTCGGTCTACTCCAATCCTATTTCTAT
*
19733967 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTT
* *
19734032 TCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTGGAAACTTTTTACGGTTCCCAGGATT
66 TCATGGCAAGACGACTCG-TTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTT-CCA-GATT
* * * *
19734097 TTTTAAAAATTTTTGGGAAGGAGTTTTGG-CCCAACCTT-TTAGACGTGAATCCTTGTATTTTTT
128 TTTTAAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTT
*
19734160 GTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGA-TTTGTGA-CATTTG-A
192 -TTGGCACGC-AAAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAA
* *
19734222 AATAGTGTCCCCATTTCAGACACTTTAAATTTGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
255 AAAAGTGTCCCCATTTCAAACACTTT-AA--TGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
* *
19734287 GCTCTTTAAGGGGGTGTGAG-TT-TTGAGGTTTGCTGAGTGATA-GGGG-CAATATAGAGGGCC-
317 GCTCTTTAAGGGGGTGTG-GCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCA
* * *
19734347 AGTA-CAGTCATCCATCGCACATCA-TGTG-CCCC-GC-CCCCCTGATCGGCCGG-A-CTCAATG
380 AGTACCAG-CACCCATCGCACATCACTGCGACCCCGGCTCCCCC-GATC-GCCGGAACCCCAATG
* * *
19734405 -G-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAG
442 CGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAG
* * ** * * *
19734468 CACATGCCCGAGCTCAGCATGGGCTGCCGCAACTATCGGT-TCGGTCCAATGTTAGACTGGGAAT
507 CACATGCCCGAGCCCAGCATGGGCTACAACAACCATCGGTCT-GGTCCAATCTTAGACTGAGAAT
** * *
19734532 GAACGT-CGTTTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
571 GAAC-TACGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
19734596 GCGGGCGCTCAGGCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGC
635 GCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAACCGAGGATCGGTCGGGTCCCCCTCTGC
19734661 GTACTATCGA
Statistics
Matches: 613, Mismatches: 65, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
746 1 0.00
747 218 0.36
748 2 0.00
750 10 0.02
751 7 0.01
752 8 0.01
758 3 0.00
759 80 0.13
760 90 0.15
761 43 0.07
762 62 0.10
763 88 0.14
764 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (752 bp):
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTT
TCATGGCAAGACGACTCGTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCCAGATTTTT
TAAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
CACGCAAAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
GGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCACTGCGACCCCGGCTCCCCCGATCGCCGGAACCCCAATGCGTCGATCAGGTTC
TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCC
CAGCATGGGCTACAACAACCATCGGTCTGGTCCAATCTTAGACTGAGAATGAACTACGTAAGCTT
AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAACCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATCCTGC
TACCGCAACCCTCGGTCTACTCCAATCCTATTTCTAT
Found at i:19736347 original size:26 final size:26
Alignment explanation
Indices: 19736311--19736363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19736301 CTAGTCCGAT
*
19736311 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19736337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19736363 C
1 C
19736364 CTCAATTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19737151 original size:903 final size:901
Alignment explanation
Indices: 19733968--19738006 Score: 5423
Period size: 900 Copynumber: 4.5 Consensus size: 901
19733958 TATTTCTATG
*
19733968 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
19734033 CATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTGGAAACTTTTTACGGTTCCCAGGATTT
66 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT--CAGGATTT
* * * *
19734098 TTTAAAAATTTTTGGGAAGGAGTTTT-GGCCCAACCTT-TTAGACGTGAATCCTTGTATTTTTTG
129 TTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTG-ATCCTTGTA-TTTTTG
* *
19734161 TTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGA-TTTGTGA-CATTTG-AA
192 TTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
19734223 ATAGTGTCCCCATTTCAGACACTTTAAATTTGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
256 AAAGTGTCCCCATTTCAGACACTTT-AA--TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
19734288 CTCTTTAAGGGGGTGTGAGTT-TTGAGGTTTGCTGAGTGAT-AGGGG-CAATATAGAGGGCC-AG
318 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATA-AGGGCCAAG
* * * *
19734349 TA-CAGTCATCCATCGCACATCATG--TG-------CCCCGCCCCCCT-GATCGGCCGG-A-CTC
382 TACCAG-CACCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATC-GCCGGAACCCC
* *
19734401 AATG--G-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGC
445 AATGCCGTCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGC
* ** * * *
19734463 ACCAGCACATGCCCGAGCTCAGCATGGGCTGCCGCAACTATCGGT-TCGGTCCAATGTTAGACTG
510 ACCAGCACATGCCCGAGCCCAGCATGGGCTGCCGCAACCCTCGGTCT-GATCCGATCTTAGACTG
* * *
19734527 GGAATGAACGTCGTTTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
574 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* **
19734592 GCGTGCGGGCGCTCAGGCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCT
639 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCT
* ** * * *
19734657 CTGCGTACTATCGATTTTGCTGCCGCAACCTTTCGTCCGGTTCGATCTTAGACTAGGAATGAACT
704 CTGCGTACTACCGATCCTGCTGCCACAACCCTT-GTCCGGTCCGATCTTAGACTAGGAATGAACT
* * *
19734722 CCGTATGCCTAAGACAACTGACGAAACGAGCAGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAG
768 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGGCGGGCGGGCACTACGCCGGCCAG
* * *
19734787 AGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAGATT
831 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATT
19734852 TCTGCA
896 TCTGCA
* * * *
19734858 TGCCAATGCCATTTTTATGGCTTGTAAATTCCTACGATGGTCCCTTAAGCCTTCGCATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
19734923 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGTTTCAGGATTTTT
66 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTT
* *
19734988 TAAAATTTTTTCGGAAGG-GATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
131 TAAAATTTTTTCGGAAGGAG-TTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
19735052 GCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAGG
195 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
19735117 TGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
260 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* **
19735182 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCA
325 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA
* ** *
19735247 CCCATCGCACATCATAACCGCACACCCCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCGTCA
390 CCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCG
* *
19735312 GTCAGGTT------C--T-CT--GACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACAT
455 GTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACAT
* * * * *
19735366 GCCCGAGCCCAGCATGTGCTGCCGTAACCGTCGTTCTGATCCGATCTTAGACTGGGAATGAACTC
520 GCCCGAGCCCAGCATGGGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTT
* * * * * *
19735431 CTTAAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCCTGCGGGCG
585 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
19735496 CTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTTCCCCTCTGCGTACTGC
650 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTACTAC
* * * ** * *
19735561 TGATCTTGCTACTGCAACCCTCTATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
715 CGATCCTGCTGCCACAACCCT-TGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * *
19735626 AGCCAACCGACGAAACGAGC-TG-GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGC
779 AGCCAACCGACGAAACGAGCGGGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
19735689 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGCA
844 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCA
* * *** *
19735747 TGGCAATGACATTTTTCCAGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** *
19735812 CATGACAAGACGACTCGTTTTCTTTTTTTTCACGATTTTCAAAACTTTTTAG-GGTTCGGGATTT
66 CATGGCAAGATGACTCGTTTTC-TATTTTTCACGATTTTTGAAACTTTTT-GCGGTTCAGGATTT
* * * *
19735876 TTCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
129 TTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
19735941 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAA
194 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
** * * *
19736006 GTGTCTGCATTTCAAACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
259 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * **
19736071 AA-GGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGAAAATATAAGGGCCAAGTACCAGC
324 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
19736135 ACCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATCTCCGGAACCGCGATTCCGCC
389 ACCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTC
*
19736200 GGTCAGGTTCCCCGACGATGCTCCTG-CGATGGTGCCCCGGA-GAAGAAAAATGTGGCACCAGCA
454 GGTCAGGTTCCCCGACGATGCTCC-GACGATGGTGCCCC-GATGAAGAAAAATGCGGCACCAGCA
**
19736263 CATGCCCGAGCCTGGCATGGGCTGCCGCAACCCTCGGTCT-AGTCCGATCTTAGACTGGGAATGA
517 CATGCCCGAGCCCAGCATGGGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGA
** *
19736327 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAA-TTTACCCACGAAACAAGCGTGC
581 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGC
* * *
19736391 GGGCGCTCAGGCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGT
645 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGT
* * * *
19736456 GCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
710 ACTACCGATCCTGCTGCCACAACCCTT-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
19736521 GCCTAAGCCAACCGGCGAAACGAGCGGGCGGGCCGGCGGGCGCGCACTACACCGACCAGAGAGAC
774 GCCTAAGCCAACCGACGAAACGAGCGGGCGGG--GGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
19736586 GGGATGCGCAAGTCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCG
837 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCA
* *
19736651 TGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCGCGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
19736716 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTT
66 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTT
*
19736781 TAAAATTTTTTCGGAAGGGGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGG
131 TAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
19736845 GATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
196 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
19736910 GTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTTTTTAA
261 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** *
19736975 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
326 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * *
19737040 CCATCGCACATCATGACCGCACACCCCCTTGTCCCCCTCGATCGCCAGAACCCCAACGCCGTCGG
391 CCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGG
* ** * * *
19737105 TCAGGTTCCCCAACGATGCTCCGGTGATGGTGCTCTGACGAAGAAAAATGCGGCACCAGCACATG
456 TCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
* * * * * *
19737170 CCCGAGCCCGGCATGGGCTGCTGCAACCCTCAGTCTGATCCGTTCTTAGACTGAGAATGAACTTT
521 CCCGAGCCCAGCATGGGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTC
* *
19737235 GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
586 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
19737300 TCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATAGGCCGGCTCCCCCTCTGCGTGCTACC
651 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTACTACC
* * ** * * *
19737365 GATCCTACTGCCACAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAA
716 GATCCTGCTGCCACAACCCT-TGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * * *
19737430 GCCAACTGATGAAACAAGCGGGC--GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
780 GCCAACCGACGAAACGAGCGGGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
19737493 CAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATC-TAAATATTTTTTGCA
845 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAA-A-TTTCTGCA
* *
19737551 TGCCAAGGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** * *
19737616 TATACCAAGATGACTCATTTTCTATTTTTCACGATTTTTTGAAACTTTTTACGGTTCA-GATTTT
66 CATGGCAAGATGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCAGGATTTT
* *
19737680 TTAAAATTTTTTTGAAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
130 TTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
19737744 GGATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAG
195 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
19737809 TGTCCCCATTTCAGACACTTTAATGGCTACCGACAGCAAACCTGTAAAATCTCAAATGCTTTTTA
260 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
19737874 AGGGGGTGTGAGTTCTTGAGGATTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCCA-C
325 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTA-CCAGC
* ** * *
19737938 ACCCATCACACATCATGTGCGCACACCCCCCCGACCCCC-CTGATCGCCGGAACCCCAATGTCGT
389 ACCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTC-GATCGCCGGAACCCCAATGCCGT
19738002 CGGTC
453 CGGTC
19738007 CAGTTCTTCG
Statistics
Matches: 2778, Mismatches: 307, Indels: 118
0.87 0.10 0.04
Matches are distributed among these distances:
887 89 0.03
888 68 0.02
889 322 0.12
890 383 0.14
891 3 0.00
892 2 0.00
893 277 0.10
894 2 0.00
895 3 0.00
896 1 0.00
897 1 0.00
898 6 0.00
899 123 0.04
900 648 0.23
901 35 0.01
902 137 0.05
903 504 0.18
904 174 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGG
TCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGGGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTACTACC
GATCCTGCTGCCACAACCCTTGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCA
Found at i:19737253 original size:26 final size:26
Alignment explanation
Indices: 19737214--19737266 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19737204 CTGATCCGTT
*
19737214 CTTAGACTGAGAATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
*
19737240 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
19737266 C
1 C
19737267 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:19738826 original size:26 final size:26
Alignment explanation
Indices: 19738797--19738847 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19738787 GGTCCGATCT
*
19738797 TAGACTGGGAATGAACTCGGTATGCG
1 TAGACTGGAAATGAACTCGGTATGCG
*
19738823 TAGACTGGAAATGAACTCTGTATGC
1 TAGACTGGAAATGAACTCGGTATGC
19738848 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCGGTATGCG
Found at i:19739750 original size:28 final size:26
Alignment explanation
Indices: 19739693--19739774 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 26
19739683 CCGGTCCGAT
* * *
19739693 CTTAGACTGGGAATGAAATCCATAT-
1 CTTAGACTGGAAATGAACTCCGTATG
*
19739718 CTTAGACCTGGTAATCGAACTCCGTATG
1 CTTAGA-CTGGAAAT-GAACTCCGTATG
*
19739746 CTTAGATCGGCGAAATGAACTCCGTATG
1 CTTAGA-CTG-GAAATGAACTCCGTATG
19739774 C
1 C
19739775 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
25 6 0.13
26 7 0.15
27 9 0.19
28 21 0.45
29 4 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19740668 original size:26 final size:26
Alignment explanation
Indices: 19740632--19740684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19740622 CTGGTCTGAT
*
19740632 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19740658 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19740684 C
1 C
19740685 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19741146 original size:26 final size:26
Alignment explanation
Indices: 19741117--19741169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741107 CCGGTCCGAT
*
19741117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19741143 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19741169 C
1 C
19741170 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19742229 original size:26 final size:26
Alignment explanation
Indices: 19742193--19742245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19742183 CTGGTCCGAT
19742193 CTTAGACTGGGAATGAACTTCC-TATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
*
19742219 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19742245 C
1 C
19742246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19743126 original size:26 final size:26
Alignment explanation
Indices: 19743095--19743144 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19743085 CCAGTACGAT
19743095 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
19743121 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19743145 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:19743840 original size:899 final size:899
Alignment explanation
Indices: 19741376--19748735 Score: 9369
Period size: 902 Copynumber: 8.2 Consensus size: 899
19741366 CGAGCACTAC
* * * * * **
19741376 GCCGACCAGAGGGGAGGGATGCGCAAGAT-GGGGATTGGCCGGGTCGCCCTCTGCGTGCTATCGA
1 GCCGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGA
** * * * *
19741440 TCCTGCAACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
65 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
19741505 CAACCGACGAAAAGAGCGGACGGGCAGGTAGGCGGACGGGCACTACGCCGGCCATAGAGACGGGA
130 CAACCGACGAAACGAGCGGGCGGGC-----GGC-G-CGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
19741570 TGCGCAAGCAGTGTATCGATAGTGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCC
188 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* *
19741635 AATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATG
253 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
19741700 GTAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTAAA
318 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * **
19741764 ATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACATGAGCCCTGTATTTTTGTTCTCATG
383 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
19741829 CACAAAAAAATTCAGCTAAAAACTTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
448 CACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
19741893 CCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTTTTTAAGGG
512 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
19741958 GGTGTGAGTTTTCAAGGTTTGAT-AGGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCC
577 GGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
19742022 ATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCG-CTGGTC
641 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTC-GGTC
* * * *
19742086 AGGTTCTCAGGCTATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGAACATGCC
705 AGGTTCTCCGGCGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
19742151 CAAGCCCAGCATCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCC-
769 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCCG
* * *
19742215 TATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTT
833 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
19742280 CA
898 CA
* * * * * *
19742282 GCCTGCTAGAAGGACGGGATGCGCAAGCCGGGGATC-GCCTGGGTCCCCCTCTACGTGCTGCCAA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC-GGGTCCCCCTCTACGTGCTGCCGA
* * * * *
19742346 TCCTGCTGCCGTAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGACTAAGC
65 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
19742411 CAACCGACGAAAGGAGCAGGTGGGCGGGCAGGCAGGCACAACGTCAGCCTGAGAGACGGGATGCG
130 CAACCGACGAAACGAGCGGGCGGGC-GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
19742476 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTATGTGCCAATG
192 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* *
19742541 CCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCAATGGCA
257 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCA
* * * ** *
19742605 AGGCGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATT
321 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
19742670 TTTTCGGAAGGAGTTTTGGTCCCAAACTTTGTAGACGTGATCTTTGTATTTTTTTTGGCATGCAC
386 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
19742735 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
451 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
19742800 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
516 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
19742864 TGAGTTCCCGAGGTTTGATGAGGGATAGGTGGG-CAATATAAGGGCCAAGTACCAGCACCCATCG
581 TGAGTTCTCGAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
19742928 CACATCATGTGCGCACACCCCCTGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGATTAGGTT
645 CACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
*
19742993 CTCCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGC
710 CTCCGGCGATGC-TCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
19743058 CCAGCATGTGCTGCCACAAGCCTCGGTCCAGTACGATCTTAGACTAGGAATGAACTCCGTACGCT
774 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
19743123 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAA-GAGCGTGCGGGCGCTCA
839 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * *
19743183 GCCGGCCAGAGGGGTGGGATGCAAAAGTCGGGGATCAGCCGGGTCCCACTCTACGTGCTGTCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* * * * * * *
19743248 CTTACTGTTG-AACCCTCGATCCGATCAGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCC
66 CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
19743312 AACTGACAAAACGACCGGGCGGGCGGACGAACGGGCACTACGCCGGCCAGAGAGATGGGATACGC
131 AACCGACGAAACGAGCGGGCGGGCGG-CG--CGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
19743377 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC-ATGC
193 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
19743441 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
258 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19743506 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAA-TTT
323 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * ** * **
19743570 TTCGAAACGAGTTTTCACCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTTTCATGCACAA
388 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** *
19743635 AAAAATTCAGCGGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
453 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19743700 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGTGGGTGTG
518 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19743765 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCAC
583 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * *
19743830 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCACCGGAAGCCCAATGCCGTCGATCAGGTTCTC
648 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * * *
19743895 CGGTGATGCTCTGGCGATGGCGCCCCAACGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCTA
713 CGGCGATGCTC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
19743960 GCATGTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCCTAAGCTTAG
777 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * ** * *
19744025 ACTGGTATTGAACTCCGTATGCCTAAGTCAACCCCACGGAACGAGCGTATGAGCGCTTA
842 ACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
19744084 GCCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCAGTCGGGTCCACCTCTACGTGCTGCTGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* ** * * * *
19744149 CCTGCTACCACAACCCTCTGTTCGGTCCT-AACTTAGACTGGGAATGAACTCCGTATGCCTAAGG
66 CCTGCTGCTGCAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
19744213 CAACCGACGAAAC--GCGGGCGGGCAGGCAGGCGGGCATTACGTCGACTAGAGAGACGGGATGCG
130 CAACCGACGAAACGAGCGGGCGGGC-GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
19744276 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTACGTGCCAATG
192 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
** * *
19744341 CCATTTTTACAGCCTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
257 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
19744406 GATTG-CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATT
322 GA-CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
19744470 TTTTTGGTAA-GAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
386 TTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
19744534 CAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCC
450 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
19744599 ATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGT
515 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** *
19744664 GT-AGTTCTTC-AGGTTTGATGAGGGATAGCAGGCCAATAGAAGGGCCAAGTACCAGCACCCATC
580 GTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
19744727 ACACATCTTGTGCGCACACTCCCCCTGGCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAG
644 GCACATCATGTGCGCACAC-CCCCC-GGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * *
19744792 GTTCTCCAGTGATGCTCTAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
707 GTTCTCCGGCGATGCTCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
19744857 AGCCCAGTATGTGCTGCCACAACCCTCGGTCCGGTTCAATCTTAGATTGGGAATGAACTCCATAT
771 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
19744922 GCTTAGACTTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-ATGTGTGCAGGCGCTC
836 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTC
19744986 A
899 A
* * * * *
19744987 GCCGACCAGAGGGGTC-AGATGCGCAAGTCGGGGATCGACCGGGTCCCACTTCTACGTGCTACCG
1 GCCGGCCAGAGGGG-CGGGATGCGCAAGTCGGGGATCGGCCGGGTCCC-CCTCTACGTGCTGCCG
** * ** *
19745051 ATCCTGCTGCCCCAACCCTCCGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
64 ATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
19745116 TCAACTGACGAAATGAGCGGGCGGGCGG-GCGGGCACTACACCGACCAGAGAGACGGGATGCGCA
129 CCAACCGACGAAACGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
19745180 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTAATATTTCTGTGTGCCAATGCC
194 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
19745245 ATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGA
259 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19745310 CAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAA-TTTT
324 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
19745374 TCGGCAGGAGTTTTGGCCCGAAACAAT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
389 TCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* **
19745438 ACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATT
453 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
19745503 TCAGACACCTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
518 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19745568 AGTTGTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
583 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
19745633 ATCATGTGCGCACACCCCCCCCGACCCCTCCGATCATCGAAACCCCAATACCGTCGGTCAGGTTC
648 ATCATGTGCGCACA-CCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
19745698 TCCGGTGATGCTC--CGA--------C-A--ATGAAAAATACGGCACCATCACATGCCCGAGCCT
711 TCCGGCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
19745750 AGCATGTGTTGCTGCAACCCTCGGTCTGATCCAAGCTTAGACTGGAAATGAACTCCGTATGCTTA
776 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * *
19745815 GACTGGGAATGAACTCCATATGCGTAAGTCAAACCACGGAACGAGCGTACGGGCGTTCA
841 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** * * * *
19745874 GCTGACCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTCAAGCCCCCCTCTGCGTGTTGCCAAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* * * *
19745939 CCTGCTGTTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
66 CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
19746004 AACCAACGAAAGGAGCGAGGTGGGTGG-GCGGGCAAGCATTACGCCGGCCAGAGAAACAGGATGC
131 AACCGACGAAACGAGCG-GGCGGGCGGCGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATGC
* * * *
19746068 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTTATATTTCTACATGCCAAT
191 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
*
19746133 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCA
256 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
19746198 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATT
321 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
19746263 TTTTCGGAAGGAGTTTAGGCCCCAAAGTTGGTAGATGGGATCCTTGTATTTTT-TTGGCATGCAC
386 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
19746327 AAAAATATTCAGCTAAAAACTCGAAGTGTAGAATATTTTGTGACCATTTGAAAAAAGTGTCCCCA
451 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
19746392 TTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-
516 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
19746456 TGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGC
581 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
19746521 ACATCATGTGCGCACACCCCCTCGGCCCCC-CGATCGAT-GGAACCCCAATGCCGTCGGTCATGT
646 ACATCATGTGCGCACACCCCC-CGGCCCCCTCGATCG-TCGGAACCCCAATGCCGTCGGTCAGGT
* **
19746584 TCTCCGGCGA---T-G-C-----TGCCCCGACGAAGAAAAATGTGGCACCAGCACATTACCGAGC
709 TCTCCGGCGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
19746639 CCAGCATGTGCTGCCGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
774 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
19746704 TAGACTAGGAATGAACTCCGTCTGCCTAAGTCAACCCACGGAATGAGCGT-CTAGGCGCTCA
839 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* * * * * * ** *
19746765 ACCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGGGTGCTGTCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* * * * * * * *
19746830 CCTACTACCGCAACCTTCGATCTGGTTTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCC
66 CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** *
19746895 AACCGACGAAACGA----GCAGACGG-GCGGGCTCTACGCTTGCCAGAGAGACGGGATGCGTAAG
131 AACCGACGAAACGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
19746955 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATCCCAATGCCAT
196 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
19747020 TTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
261 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** *
19747085 ACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGTGGTTTGGGATTTTTTAAAATTTTTTC
326 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
19747150 GGAATGAGTTTTGGCCCCAAGCTTGATAGACGTGGTCCTTCTATTTTTGTTGGCATGCACAAAAA
391 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
19747215 AATTCAGCTAAAAACTCGATGTGTCCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
456 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
19747280 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
521 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
19747345 TCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCTCTCATCGCACATC
586 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
19747410 ATGTGCGCACAGCCCACCCCCTGACCCCCTCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTT
651 ATGTGCGCACA---C-CCCCC-GGCCCCCTCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
19747474 CTCCGACGATGCTCTGACGCTGGTGCCCCGAGGAAGAAAAATGCAGCAACAGCACATGCCCGAGC
710 CTCCGGCGATGCTC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
19747539 CCAGCATGTGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAAAGAACTCCGTATGCT
774 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
19747604 TAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGGTGCTCA
839 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
19747665 GCCAGCCAGAGGGGCGGGATGCGCAAG-CTGAGGATCGGTCGGGTCCCACTCTGCATGCTACCGA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGA
* * * *
19747729 TCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAACGAACTCTGTATGCCTAAGC
65 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
19747794 CAACCGACGAAACGAGCGGGCAGGCGG-GCGGGCTCTACGTCAGCCAGAGAGACGGGATGCGCAA
130 CAACCGACGAAACGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
19747858 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCT
195 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
19747923 TTTTTACGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTTATGTGAAGTTTCATGGCAAGAC
260 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
19747988 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTCGGGATTTTTTAAAATTTCT
325 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG-TTCGGGATTTTTTAAAATTT-T
* * * * *
19748053 TT-GGGAGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATATTTGTTGGCATGCAAAA
388 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
19748117 AAAAATTCAGCTAGAAACTTGAAGTGTACAATATTTTGTAACCATTTGAAAAAAATGTCCCCATT
453 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19748182 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
518 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19748247 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCTCATCGCA
583 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCA
* * * * ** * *
19748311 CATCTTGTGCGCATACCGCCCCCGACCCCCTCGTTCACCGGAACCCTAATGCCGCCGGTCAGGTT
647 CATCATGTGCGCACA-C-CCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * ** *
19748376 CTCCGACAATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCTAGC
710 CTCCGGCGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** *
19748441 CCAGCATGTGCTATCGC-A---TC---CC--T-C--TGTT----T-GG--T---CT--G-AT-CT
774 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
19748480 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCAGGAAACGAGCGGGTGAGCGCTCA
839 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * *
19748541 GCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* ** * *
19748606 CATGCTGCCACAACCCTCGGTCCGGTCTGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCC
66 CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
19748671 AACCGACGAAACGAGCGGGTGGGTGG-ACGGGCACTACGCCGGCCAGAGGGGCGGGATGCACAAG
131 AACCGACGAAACGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
19748735 C
196 C
19748736 TGGGGATTGG
Statistics
Matches: 5670, Mismatches: 682, Indels: 234
0.86 0.10 0.04
Matches are distributed among these distances:
876 225 0.04
877 3 0.00
878 1 0.00
880 2 0.00
882 246 0.04
883 133 0.02
884 76 0.01
885 4 0.00
886 97 0.02
887 97 0.02
888 136 0.02
889 46 0.01
890 86 0.02
891 580 0.10
892 47 0.01
893 1 0.00
894 1 0.00
895 3 0.00
898 182 0.03
899 392 0.07
900 528 0.09
901 528 0.09
902 1132 0.20
903 410 0.07
904 307 0.05
905 269 0.05
906 138 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
CGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
Found at i:19744935 original size:27 final size:26
Alignment explanation
Indices: 19744897--19744950 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
19744887 CCGGTTCAAT
19744897 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
19744923 CTTAGACTTGGGAATGAACTCCGTATG
1 CTTAGA-TTGGGAATGAACTCCATATG
19744950 C
1 C
19744951 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:19745820 original size:26 final size:26
Alignment explanation
Indices: 19745784--19745837 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19745774 TCTGATCCAA
*
19745784 GCTTAGACTGGAAATGAACTCCGTAT
1 GCTTAGACTGGAAATGAACTCCATAT
*
19745810 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGAAATGAACTCCATAT
19745836 GC
1 GC
19745838 GTAAGTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGAAATGAACTCCATAT
Found at i:19747605 original size:26 final size:26
Alignment explanation
Indices: 19747576--19747628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19747566 CCGATCCGAT
19747576 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
19747602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19747628 C
1 C
19747629 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19748812 original size:167 final size:164
Alignment explanation
Indices: 19748472--19748863 Score: 499
Period size: 167 Copynumber: 2.4 Consensus size: 164
19748462 CTCTGTTTGG
* *
19748472 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CGCAGGAAACGAGC----GGGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGCGGGTGGGT
* * *
19748532 -GAGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCA
65 GGAGCGCACAGCCGGCCAGAGGGGCAAGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCA
* *
19748596 TGCTACCGATCATGCTGCCACAACCCTCGGTCCGG
130 TGCTACCGATCATGCTACCACAACCCTCGGTCCGA
* *
19748631 TCTGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTG
* ** * * *
19748696 GACGGGCACTACGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATTGGCCAGGTCCCCCTCTG
66 GA-GCGCAC-A-GCCGGCCAGAGGGGCAAGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTG
* ** * ** *
19748761 CGTGCTGTCGATCTTGCTACCGTAAGCCTCGGTCCGA
128 CATGCTACCGATCATGCTACCACAACCCTCGGTCCGA
*
19748798 TTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTG
19748863 G
66 G
19748864 GCACTACATC
Statistics
Matches: 199, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
159 49 0.25
160 2 0.01
163 4 0.02
164 2 0.01
165 4 0.02
166 1 0.01
167 137 0.69
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (164 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTG
GAGCGCACAGCCGGCCAGAGGGGCAAGATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCAT
GCTACCGATCATGCTACCACAACCCTCGGTCCGA
Found at i:19749536 original size:26 final size:26
Alignment explanation
Indices: 19749485--19749537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19749475 CCAGTACGAT
* *
19749485 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACATATG
*
19749511 CTTAGACTGGGAATGAACTACATATG
1 CTTAGACTAGGAATGAACTACATATG
19749537 C
1 C
19749538 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:19750402 original size:26 final size:26
Alignment explanation
Indices: 19750373--19750425 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19750363 CTGGTCCGAT
19750373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19750399 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19750425 C
1 C
19750426 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19750717 original size:877 final size:887
Alignment explanation
Indices: 19749048--19752479 Score: 4288
Period size: 885 Copynumber: 3.8 Consensus size: 887
19749038 TATTTTTCAT
* * ** *
19749048 GATTTTTGAAACTTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAGCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
19749113 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTC-AAGTGTACAAGATTTTGTGACCATTTG
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTG
*
19749177 AAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
* * *
19749242 TTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAGTATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19749307 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCTCCCCCGATCGTCGGAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCAAATG
* * *
19749372 TCGCTGGTCAGGTTCTCAGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
325 CCGCCGGTCAGGTTCT-----GAT-CTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * *
19749437 GCACATGCCCAAGCCCAGCA--TG-TGCCACAAGCCTC-GATCCAGTACGATCTTAGACTAGGAA
383 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTAGGAA
*
19749498 TGAACTCCGTATGCTTAGACTGGGAATGAACTAC-ATATGCCTAAGTCAACCCACGAAACGAGCG
447 TGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** * **
19749562 TACGGGCGCTCAACCGGCCAGCGGGGCGGGATGCAAAAGTCGAGGATCAACCGGGTCCCCCTCTA
511 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT-
* * *** * * *
19749627 CGC-T-CTGTCAATCTTACTGCTGTAACCCTCGGTCCAATC-AGATCCTAGACTGGGAATGAACT
575 -GCATGCTGCCAATCCTACTGCCACAACCCTCAGTCCGATCTA-ATCTTAGACTGGGAATGAACT
** *
19749689 TTGTATGCCTAAGCCAACCGACGAAACGAGCGGCTGGACGGGCGGACGGGCACTATGCCGGCCAG
638 CCGTATGCCTAAGCCAACCGACGAAACGAGC-G--GG-C--G-GG-CGGGCACTACGCCGGCCAG
* *
19749754 AGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
695 AGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATT
*
19749819 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
760 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
19749884 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTGAAACTTTTTGCAGTTCGA
825 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TAAAACTTTTTACGGTTCGG
* *
19749948 GATTTTTTAAAA-TTTTTCGAAAGGAGTTTTTGTCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * *
19750012 TTGTTGTCTTGCACAAAAAATTTCAAC-AGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTG
66 TTGTTGGCATGCACAAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19750076 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
*
19750141 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19750206 ACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCTGAACCCAAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCAAAT
* * * *
19750270 GCCACCGGTCAGG-T-T-AT-T-CG-G-TGATGCTCCGACGAAGAGAAATGCGGCACCAGCACAT
324 GCCGCCGGTCAGGTTCTGATCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* *
19750328 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTC
389 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTC
* * * *
19750393 CGTATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAACGTGCGGGTG
454 CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
19750458 CTCAGCCGGCCAAAGGGGCGGGATGCG-AAGTCGGGGTTCGGCCGGGTCCCCC-CTGCATGCTGC
519 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGC
* * * * *
19750521 CGATCCTGCTGCCACAACCTTCAGTCCGATCTAATCTTAGACTGGGAAAT-AACTCCCTAAGCCT
584 CAATCCTACTGCCACAACCCTCAGTCCGATCTAATCTTAGACTGGG-AATGAACTCCGTATGCCT
* * *
19750585 AA-CCAACCAATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGTAAG
648 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAG
* * *
19750649 CCGTGGATCGATAGGGTGGTAAGTGGCTCTAGGCACATCTTCATATTTCTGCGTTCCAATGCCAT
713 CCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* ** *
19750714 TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTAGATGGCAAGATG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
19750779 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGG
843 ACTCGTTTTCTATTTTTCACGA-TTTTAAAACTTTTTACGGTTCGG
*
19750825 GATTTTTTAAAATTTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTATT
1 GATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
19750889 TTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * ** *
19750954 AAAAAAGTGTCCCCATTTTAGACCCCATAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
* ** *
19751019 CTCTGTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
19751084 ATCAGCGCCCATCACACACCAT-TGCGCACACCCCCCTCGGCCCCCCCGATCATCGGAACCCCAA
260 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCAAA
* * * * * ** * *
19751148 TGCTGTCGGTCAGGTTC---TC-CGGCTATGGTGCTCCGGTGAAGAAAAATGTGGCACCAACACA
323 TGCCGCCGGTCAGGTTCTGATCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * * * * *
19751209 TGCTCGAGCCCAGCATGTGCTACCGTAAACCTCAGTCTGATCAGATCTTAGACTGGGAATGAACT
388 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACT
* * * *** *
19751274 CCATATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAAGACAAAACGAGCGTGCGGGC
453 CCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * ***
19751339 GCTCAGCCGACCAGAGTGGCGGGATGTGCAAGTCGGGGATCGGTCGGGTCCCACTCTATGTGCTG
518 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTG
** *** ** * * *
19751404 CTGATCCTACTGTTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
583 CCAATCCTACTGCCACAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
19751469 AAGCCAATCGACGAAACGAGCGGGCGGGTGAGCACTACGCCAGCCAGAAAGACGGGATGCGCAAG
648 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAG
** * *
19751534 TTGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
713 CCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
19751599 TTTTATGGCTTGCAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
19751664 ACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
843 ACTCGTTTTCTATTTTTCACGATTTT-AAAACTTTTTACGGTTCGG
* * * *
19751710 GATTTTTTAAAATTTTTTC-AGAAGGATTTTTGGTCCCAAAATTGGTAGACATGATCCTTGTACT
1 GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
*
19751774 TTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTT
64 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
19751838 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTAGCAGCAAACC-GATAAAATCTCAAA
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG-TAAAATCTCAAA
* **
19751902 TGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAA
193 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
19751967 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAA
258 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA-CCCAA
* * *
19752031 A-GTCGTCGGTCAGGTTTTCTGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCTGCA
322 ATGCCGCCGGTCAGG--TTCT---GAT-CTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * ** * * *
19752095 CCAGCACATGCCCTAG-CCAACATGTGCTGCCGCAACAATCGGTCCGGTTCAATCTTAGACTAGG
380 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGG
* * * *
19752159 AATGAACTCCGTATGCTTAGACTGGGAATTAATTTTGTATGCCTAAGTCAACCCATGAAACGAGC
445 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* * * **
19752224 GTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCCCAAGTCCCCCTCT
510 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCT
* * * ** * * * * *
19752289 GTATGCTACCAATCCTGCTGCCACAACCCTCAGTTTGGTCTGATGTTTGACTGAGAATGAACTCC
575 GCATGCTGCCAATCCTACTGCCACAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCC
* *
19752354 GTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGAGGGCGGGCGGGCGGGCACTACGCCTGCC
640 GTATGCCTAAGCCAACC---G--ACGA---AAC--GA--GCGGGCGGGCGGGCACTACGCCGGCC
* ** * * *
19752419 AGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTT
693 AGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTT
19752480 AGACTGGGAA
Statistics
Matches: 2187, Mismatches: 287, Indels: 111
0.85 0.11 0.04
Matches are distributed among these distances:
877 219 0.10
878 245 0.11
879 40 0.02
880 2 0.00
881 1 0.00
882 169 0.08
883 56 0.03
884 81 0.04
885 515 0.24
886 65 0.03
887 28 0.01
888 120 0.05
889 2 0.00
891 3 0.00
892 1 0.00
893 211 0.10
894 39 0.02
896 1 0.00
897 1 0.00
898 8 0.00
899 283 0.13
900 18 0.01
901 2 0.00
903 2 0.00
905 75 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCAAATGC
CGCCGGTCAGGTTCTGATCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCG
TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCA
ATCCTACTGCCACAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCG
TGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTAAAACTTTTTACGGTTCGG
Found at i:19751294 original size:26 final size:26
Alignment explanation
Indices: 19751258--19751307 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19751248 ATCAGATCTT
19751258 AGACTGGGAATGAACTCCATATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
*
19751284 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
19751308 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:19752753 original size:329 final size:329
Alignment explanation
Indices: 19752146--19752808 Score: 894
Period size: 329 Copynumber: 2.0 Consensus size: 329
19752136 GTCCGGTTCA
** * * * ** *
19752146 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATTAATTTTGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAACAAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
* * * *
19752211 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCC
66 ACACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAC
* * ** * * *
19752276 CAAGTCCCCCTCTGTATGCTACCAATCCTGCTGCCACAACCCTCAGTTTGGTCTGATGTTTGACT
131 CAAGTCCCACTCTGCATGCTACCAATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGACT
* * *
19752341 GAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGAGGGCGGGCGGGCGGG
196 GAGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGGCGGGCGAG
* * * *
19752406 CACTACGCCTGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAG
261 CACTACGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
19752471 GTAC
326 GCAC
* *
19752475 ATCTTAGACTGGGAACAAACTCCGTATTCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
1 ATCTTAGACTAGGAACAAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
* * * *
19752540 ACACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGTGGCGGGATGCGCAAGCTGGGGATCGAT
66 ACACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAC
** * * * * *
19752605 CGGGTCCCACTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTTATCTTAGACT
131 CAAGTCCCACTCTGCATGCTACCAATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGACT
* * * * *
19752670 GGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGTGAG
196 GAGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGGCGGGCGAG
* **
19752735 CACTATGCCGGACAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
261 CACTACGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
19752800 GCAC
326 GCAC
19752804 ATCTT
1 ATCTT
19752809 CATATTTTTG
Statistics
Matches: 286, Mismatches: 48, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
329 286 1.00
ACGTcount: A:0.24, C:0.25, G:0.32, T:0.20
Consensus pattern (329 bp):
ATCTTAGACTAGGAACAAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
ACACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAC
CAAGTCCCACTCTGCATGCTACCAATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGACT
GAGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGGCGGGCGAG
CACTACGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCAC
Found at i:19753414 original size:26 final size:26
Alignment explanation
Indices: 19753385--19753437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19753375 CTGGTCCGAT
*
19753385 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
19753411 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
19753437 C
1 C
19753438 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:19754321 original size:26 final size:26
Alignment explanation
Indices: 19754283--19754335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19754273 CCAGTAAGAT
* *
19754283 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19754309 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19754335 C
1 C
19754336 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19754485 original size:899 final size:898
Alignment explanation
Indices: 19752475--19760791 Score: 10224
Period size: 901 Copynumber: 9.3 Consensus size: 898
19752465 GTTTAGGTAC
** * * *
19752475 ATCTTAGACTGGGAACAAACTCCGTATTCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
19752540 ACACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGTGGCGGGATGCGCAAG-CTGGGGATCGA
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGAC-GGGGATCGA
* ** * * *
19752604 -TCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTTATCTTAGA
130 CT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGA
* *
19752668 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGTG
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC----GGGC--G-G
* * * *
19752733 AGCACTATGCCGGACAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
252 -GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ** * * * *
19752798 AGGCACATCTTCATATTTTTGCACGCGAATGCCATCTTTATCGCTTGTAAATTCATGCAATGGTC
316 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
19752863 CCTTAAGCCTTCACGTGAAGTTTCATAGG-AAGACGACTCGTGTTCTATTTTTCATGATTTTTGA
381 CCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * *
19752927 AACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAG
445 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAG
*
19752992 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
510 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
19753057 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
575 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
19753122 TGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
640 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
* * * *
19753187 AATATAATGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACACCCCCCTGGCACCCCCGA
705 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGA
* * ** * * **
19753252 TCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGGGATGCTCCGGCGATGGTGACCCGTTGA
769 TCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * * *
19753317 AGAAAAATGCAGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCGGTAACCCTCAGTCTGGTCC
833 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
19753382 G
898 G
* * *
19753383 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
19753448 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-GGGGCGGGATGCGTATGTA-AGGGATCGA
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAG-ACGGGGATCGA
** * * * * * *** * * * *
19753511 CCAGGTCTCTCTCTGTGTGTTGCCGATCCTACTATTGCAGCCCTCGATCTGGTCTGATCTTAGAT
130 CTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* *
19753576 TGGGAATGAACTTCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACG
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACG
19753641 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
260 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
19753706 TTCATATTTATACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
325 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
19753771 TTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
390 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* * * *
19753836 AGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGTCCCCAAACTTGGTAGTCGTGATCCT
455 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCT
* *
19753901 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGCGAC
520 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
19753966 CATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCT
585 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
19754031 CAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
650 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
19754096 CAAAGTACCAGGACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACC
715 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GAACC
* * * * *
19754161 TCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCG
779 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * ** * **
19754226 GCACCAGCACATGCCTGAGCCCAGCATGTGCTACCATAACCCTCGGTCCAGTAAG
844 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
19754281 ATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * *
19754346 CCATGAAATGAGCGCACGGGCGCTTAGCTGGCCAGAGAGGCGGGATGCACAAGACGGGGATCGAC
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGAC
** * ** * * * *
19754411 TGGGTGTCCGTCTATGTGTTGCCGATCCTGCTACCGCAACCCTTGCTCTGGTC--AACTTGTAGA
131 TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATC-T-TAGA
* *
19754474 CTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGTGGACGGGCGGGCGGGCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGACGGGCGGGCA
* * * * * *
19754539 CTATGCCGGCCAGAGAAAGGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
255 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
19754604 ACATGTTCATATTTCTGCGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCGTT
320 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* ** *
19754669 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACAT
385 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * ** * * *
19754734 TTTGCGGTTCAAGATTTTTTAAACTTTTTTCAAAAGGTGTTTTGCCCCCAAACTTGGTAGACGAG
450 TTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTG
* * * *
19754799 ATTCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTT
515 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
19754864 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
580 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* **
19754929 AATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
645 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19754994 AAGGGCCATGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTC
710 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTC
* * * * * *
19755059 GAAACCTCAATGCCGTCGGTCAAGTTCTCCGATGATGGTCCGGCGATGGTGCCCCGATGAAGAAA
774 G-AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
** * * * * * * *
19755124 AATGCAACACCAACGCATGCCCGAGCCCAGCATGTGCTGTCGGAAACCTCTGTCCAGTCCG
838 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* * * *
19755185 ATCTTAGACTAGGAATGAACTCTGTATG-TTAGGCT-GGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * * *
19755248 CCACGAAATGAGCGTGCGGGCGGTCAGCCAGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCG-G
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGAC
* * * * * * ** *
19755312 TCGGGTCCCCCTCTGTGTGCTGCCAATTCTGCTACCACAACCCTCGGTCTGGTCCAATATTAGAC
131 T-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
19755377 TGGGAATGAACTCCGTATGCCT------------------A--------A-------GC-CTACG
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACG
* * *
19755408 TCGGCCCGAGAGACGGGATACGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
260 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
19755473 TTCATATTTCTACGTTCCAATGCCATTTTT-TTACTTGTAAATTAATACAATGGTCCCTTAAGCC
325 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* **
19755537 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGC
390 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* * *
19755602 GGTTC-GAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTTG-TCCCAAACCTGGTAGACGTGATC
455 GGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGACCCCAAACTTGGTAGACGTGATC
* * * *
19755665 CTTCTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATGTTGTG
518 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
19755730 ACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTA-TAGGCAGCAAACTTGTAAAT
583 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAA
* *
19755794 TCTCAAATGCTCTCTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
647 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
19755859 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCC-G---CCCAGATCGTCGGA
712 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GA
* * * *
19755917 ACCCTAATGCCGTCGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCAGGCAAAGAAAAA
776 ACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * *
19755981 TGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTACG
840 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
19756040 ATCTTAGACTGGCAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
19756105 CCACGAAATGAGCGTGCGGGTGCTCAG-TCGGCCAGAGGGGCAGGATGCGCAAG-CTGGTGATCG
66 CCACGAAATGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGAC-GGGGATCG
* * * ** *
19756168 ACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCTACAACCCTTGGTCTGATCTGATCTTAGA
129 ACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGA
* * * * *
19756233 CTGGGAATGAACGT-CGTATACCTAAGCCAACCGACAAAATGAACGGGTGGGCGGGCGGGCGGGC
194 CTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGAC--GA--AACGAGCGGGCGGACGGGCGGGC
* *
19756297 ACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGG
254 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
***
19756362 CACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
319 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* **
19756427 TAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACT
384 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
** * * *
19756492 TTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGACCCCAAACTTTGTAGACGT
449 TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGT
*
19756557 GATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
514 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
19756622 TGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTCTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * **
19756687 AAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGTTATA-GGGGCCAATA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
* ** *
19756751 TAAGGGCCAAGTACTAGCACCCATTACACATCA-GATGTGCACATCCCCCCGG-CCCCCCGATCG
709 TAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACA-CCCCCCGGCCCCCCCGATCG
* * * * **
19756814 CCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGA
772 TC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * *
19756879 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGTCGCAACGCTCAGTCCAGTCCA
836 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
** * *
19756942 ATCTTAGA-TCGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGCCTCAGTCAA
1 ATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
19757006 CGCATGAAATGAGCGTGCCGACGCTCAG-TCGACCAGAGGGGCGAGATGCGCAAGTA-GAGGATC
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAG-ACGGGGATC
* * * * * *
19757069 GATTGGGTCCCCCTTTGCGTGCTACCGATCCTACTGCTGCAACCCTTGGTCTGGT-TCAATCTTA
128 GACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCT-GATCTTA
* * *
19757133 GACT-GGAATGAACTCCGTATGGCTAAGCCAACCGACAAAACGAGCGGGAGAGA-GGGCGGGCAC
192 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GACGGGCGGGCAC
* * *
19757196 TACGTTGGCCAGAGAGACGGGATGCGCAAGCTGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCA
256 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
19757261 CGTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
321 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * **
19757326 AGCCTTCACGTGAACTTTCATGGCAAGACCACTCATTTTCTATTTTTCATTATTTTCAAAACTTT
386 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
19757391 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTCGG-A-A-G-GA
451 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGA
** *
19757452 -----G-----TT-TT---A-GC-C---CCAA--C--CTAAAAACTCGAACTGTACAAGATTTTG
516 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
19757494 TCACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTATTGGCAGCAAACCTGTAAA
581 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19757559 ATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGTCAATATA
646 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
** * *
19757624 AGGGCCAAAAACTAGCACCCATCGCACATCATGTGCGCACACCCCCACCGGCCCCCTCGATCGTC
711 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATCGTC
* *
19757689 AGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGTTGCTCCGACGATGGTG-CCCGGCGAAGAAA
774 -GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* *
19757753 AATGTC-GCACCAGCACATGCCTGAGCCCAGCATGTGCTAG-CGCAACCCTCGGTCCGGTCTG
838 AATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCCGGTCCG
* * *
19757814 ATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * * *
19757879 CCATG-AA--A-C--G-AGGAGCTCAGCAGGCCATAAGGGTGGGCTACGCAAGCCGGGGATCG-G
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGAC
* ** *
19757936 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCAGTTTGATCTTAG-C
131 T-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * ** *
19758000 TGGGAATGAACTCTGTATG-CTAAGCCGATTGACGAAACGA-------G-CGGGCGGGCATTACG
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACG
* *
19758056 CCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
260 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
19758121 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCTTTAAGCC
325 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
19758186 TTCACGTGAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTAC
390 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* ** **
19758251 AGTTTGGGATTTTTTGGAATTTTTTCGGAAGGAGTTTT-ACCCCAAACTTGGTAGACGTGATCCT
455 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCT
* * **
19758315 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGCCAC
520 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
19758380 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
585 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
19758445 AAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
650 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
19758510 CCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCAGAACC
715 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GAACC
* *
19758575 CCAATGCCGTCGGTCAGGTTC-AC--CG--G-T-----GATTGTGCCCCGACGAAGAAAAATGCG
779 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * ** * **
19758629 GCACCAACACATGCCCGAGCCTAGCATGTGCTATCGCAACCTTCGGTCTAGTCCG
844 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* * *
19758684 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** *
19758749 CCACGAAATGAGCGTGTGGGCACTCAG-TCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATC-A
66 CCACGAAATGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGA
* * * * **
19758812 GTCGGGTACCCCTCTGCGTGCGGTCGATCCTGCTGCCGCAACCCTTGGTCCAGTCTGATCTTAGA
130 CT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGA
* *
19758877 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGG-CGGGCGGACAGGCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGC-G---GGCA
*
19758941 CTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
255 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19759006 ACATCTTCATATTGCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
320 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
19759071 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
385 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
19759136 TTTGTGGTT-TGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGAGCCCAAACTTGGTAGACGT
450 TTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGT
* * * * *
19759200 GATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTATACAACATTT
514 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
19759265 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATTGCTACTGGCAGCAAACCTGTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * * * *
19759330 AAATGTCAAATGCTCTTTTAGGGGGAGTGATTTCTTGATG-TTGATGAGGGATAGGAGGCCAATA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * ** * **
19759394 TAAGGGCCAAGTACCAGCACCAATTGTACATCATGTTAGCACACCCCCCAGCCCCCCATATCGTC
709 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* *
19759459 GAAACCCCAACT-CCGTCAGTCAGGTTCTTCGACGATGCTCC-AGCGATGGTGCCCCGACGAAGA
774 G-AACCCCAA-TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGA
* * * *
19759522 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATTCGGTTCG
836 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
19759585 ATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * *
19759650 CCATGAAAAGAGCGTGCGGGCGATTAGCCGGCCAGAAGGGCAGGATGCACAAGTCGGGGATC-AG
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGA-
* * * * * * *
19759714 CCGGGTCCCTCTCTACGTGCTGCTGATCCTGCTGCTGCAACCC-TCGACTGGTCTGATCTTAGAC
130 CTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * * ** *
19759778 TGGGAATGAGCTCCGTATGCCTAAGCCAACTGACGAAATGAGTAGGCGGGTAGGCAGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-A--CGGGCGGGCAC
* * *
19759843 TACGCCAGG-CAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
256 TACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19759907 ACATCTTGATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTT
320 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
19759972 AAGCCTTCACTTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
385 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * * *
19760037 TTTGCGGTTCAGGATTTTTTAAACTTTTTTTGGAAGTATTTTTGGCCCCAATCTTGGTAGACGTG
450 TTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTG
* *
19760102 ATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTT
515 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * **
19760167 GTGACCATTTGAAAAAAGTGT-CCCATTTCAGACATTTTAATGGCTACTGGCAACAAACCTACAA
580 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
19760231 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
645 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * **
19760296 AAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCTGGCCCCCCATATCGTCG
710 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
** * *
19760361 AAACCCCAACT-CCACCGGTCAGGTTCTTCGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAA
775 -AACCCCAA-TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAA
* * *
19760424 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCG
837 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
19760486 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
19760551 CCACGAAACGAGTGTGCGGCCGCTCAGCTGGCCAGAGGGGTGGGTTGTGCAAGCCGGGGATCG-G
66 CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGAC
* ** * * *
19760615 TCGGGTCCCCTTCTGCGTGCTGTTGATCCTACTGCCGCAACCCTCGG-CTCGGTCTGATCCTAGA
131 T-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCT-GGTCTGATCTTAGA
* * * * * * * *
19760679 TTGGTAATGAACTCCATATGCCTAGGCCAACCGATGAAATGAGCGGGTGGGCGGGCAGGCGGGCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGACGGGCGGGCA
* * * * * *
19760744 CTACGTTGGCCAGAGAGACAGGATGTGCAAGCTGGGGATCGATCGGGT
255 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
19760792 CTCCCTCTGC
Statistics
Matches: 6433, Mismatches: 792, Indels: 374
0.85 0.10 0.05
Matches are distributed among these distances:
854 1 0.00
855 148 0.02
856 235 0.04
857 150 0.02
858 3 0.00
859 5 0.00
862 1 0.00
863 355 0.06
864 115 0.02
865 100 0.02
866 2 0.00
868 1 0.00
869 10 0.00
870 259 0.04
871 52 0.01
872 131 0.02
873 62 0.01
874 6 0.00
875 1 0.00
876 1 0.00
877 96 0.01
878 24 0.00
879 20 0.00
880 44 0.01
881 4 0.00
882 186 0.03
883 2 0.00
884 1 0.00
886 6 0.00
887 1 0.00
888 1 0.00
889 2 0.00
890 321 0.05
891 173 0.03
893 4 0.00
894 4 0.00
895 145 0.02
896 304 0.05
897 251 0.04
898 211 0.03
899 581 0.09
900 132 0.02
901 907 0.14
902 531 0.08
903 478 0.07
904 151 0.02
905 6 0.00
906 3 0.00
907 116 0.02
908 90 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGAC
TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGT
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAACCCC
AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
Found at i:19756082 original size:26 final size:26
Alignment explanation
Indices: 19756043--19756093 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19756033 TGGTACGATC
19756043 TTAGACTGGCAATGAACTCCGTATGG
1 TTAGACTGGCAATGAACTCCGTATGG
*
19756069 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGCAATGAACTCCGTATG
19756094 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTCCGTATGG
Found at i:19756981 original size:26 final size:26
Alignment explanation
Indices: 19756944--19756996 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19756934 CCAGTCCAAT
19756944 CTTAGATCGGGAATGAACTCTATATG
1 CTTAGATCGGGAATGAACTCTATATG
*
19756970 CTTAGA-CTGGGAATGAACTCTGTATG
1 CTTAGATC-GGGAATGAACTCTATATG
19756996 C
1 C
19756997 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCTATATG
Found at i:19758724 original size:26 final size:26
Alignment explanation
Indices: 19758686--19758738 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19758676 CTAGTCCGAT
*
19758686 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
19758712 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
19758738 C
1 C
19758739 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:19759623 original size:26 final size:26
Alignment explanation
Indices: 19759587--19759639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19759577 TCGGTTCGAT
19759587 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19759613 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19759639 C
1 C
19759640 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19760517 original size:26 final size:26
Alignment explanation
Indices: 19760488--19760540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19760478 CCGGTCCGAT
*
19760488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19760514 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19760540 C
1 C
19760541 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19760864 original size:171 final size:171
Alignment explanation
Indices: 19760596--19760962 Score: 574
Period size: 171 Copynumber: 2.1 Consensus size: 171
19760586 AGGGGTGGGT
* * *
19760596 TGTGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGTTGATCCTACTGCCGCAACCCTCG
1 TGTGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCA
* * *
19760661 GCTCGGTCTGATCCTAGATTGGTAATGAACTCCATATGCCTAGGCCAACCGATGAAATGAGCGGG
66 GCCCGGTCTGATCCTAGACTGGTAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGG
*
19760726 TGGGCGGGCAGGCGGGCACTACGTTGGCCAGAGAGACAGGA
131 TGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACAGGA
* *
19760767 TGTGCAAGCTGGGGATCGATCGGGTCTCCC-TCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
1 TGTGCAAGCCGGGGATCGATCGGGTC-CCCTTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTC
*
19760831 AGCCCGGTCTGATCCTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGG
65 AGCCCGGTCTGATCCTAGACTGGTAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGG
* *
19760896 GTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
130 GTGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACAGGA
* * * *
19760938 TGCGCAAGCCGTGGATTGATAGGGT
1 TGTGCAAGCCGGGGATCGATCGGGT
19760963 GATAGGTGGG
Statistics
Matches: 178, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
171 175 0.98
172 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.34, T:0.20
Consensus pattern (171 bp):
TGTGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCA
GCCCGGTCTGATCCTAGACTGGTAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGG
TGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACAGGA
Found at i:19763006 original size:898 final size:884
Alignment explanation
Indices: 19760787--19763089 Score: 3276
Period size: 892 Copynumber: 2.6 Consensus size: 884
19760777 GGGGATCGAT
* * * *
19760787 CGGGTCTCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGCCCGGTCTGATCCTAGACT
1 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGCCCGATCTGATCATAGACT
* * * *
19760852 GGTAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGTGGGCGGGCGGGCGGGCACT
66 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGC--G-GGGCGGGC-GGCGGGCATT
*
19760917 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGATAGGTGGGTTTAGGCAC
127 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
*
19760982 ATCTTCATATT-TTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
192 ATCTTCATATTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
*
19761046 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCATGATTTTTAAAACTTT
255 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
* * * *
19761111 TTGCGGTTCGGGATTTTTAAAAATTTTTTGGAATGTGTTTTGGCCCCAAACTTGGTAGACGTGAT
320 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * *
19761176 CCTTTTATTTTTTTTTGGCAAGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
385 CCTTGTA-TTTTTGTTGGCATG-AAAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
19761241 TGACCATTTGAAAAAGGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAA
448 TGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19761306 ATGTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCCGGTTTGAAGAGGGATAGGGGGCCAATATA
513 ATCTCAAATGCTCTTGAAGGGGCTGTGAGTTCTCCAGGTTTGAAGAGGGATAGGGGGCCAATATA
* * *
19761371 AGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCGGCCTCCTCGATCGTCGA
578 AGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCAGCCTCCCCGATCGCCGA
* * * * * * *
19761436 AACCCCAATGCTGCTGGTTAGGTTCTCCGGTGATGGTGCCCTGGTGAAGAAAAATACGGCACCAG
643 AACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTGCCCTGGTGAAGAAAAATAAGGCACCAG
* * * * *
19761501 CACATGCCCAAACCCAGCATGTGCTGCCGTAACCCTTGGTTCGGTTCGATGATAGACTGGGAATG
708 CACATGCCCAAACCCAGCATGTGCTACCGCAACCCTCGATTCGGTTCGATCATAGACTGGGAATG
*
19761566 AACTTCCTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGC
773 AACTTCCTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATGC
* * * * *
19761631 GGGCGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGTTGGGATCGGC
838 GGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAAGTCGGGATCAGC
* * * * *
19761678 CGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACT
1 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGCCCGATCTGATCATAGACT
*
19761743 AGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGTGCGGGC-TC
66 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGC-GG-GG-CGGGCG-GCGGGCAT-
* * *
19761807 TACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCA
126 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
19761872 CATCTTCATATTTCTACGTGCCAATGCCATTTTTTATGGCCTGTAAATTCATACAATGGTCCCTT
191 CATCTTCATA-TTCTATGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
*
19761937 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
254 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTT
* * *
19762002 TTTACGGTTCGGGATGTTTTAAAATTTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
319 TTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGTGTTTTGGCCCCAAACTTGGTAGACGTG
* *
19762067 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
383 ATCCTTGTATTTTTGTTGGCATGAAAAAAAC-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
19762132 GTGACCATCTGAAAGAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
447 GTGACCATTTGAAA-AAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * * *
19762196 AAATCTCATATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGCGGGATAGGGGGCCAATA
511 AAATCTCAAATGCTCTTGAAGGGGCTGTGAGTTCTCCAGGTTTGAAGAGGGATAGGGGGCCAATA
* * *
19762261 TAAGGGCCAAGTGCTAGCACCCATCGCACATCATGTGCG-ACACCCCCCTAGCC-CCCCGATCGC
576 TAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCC-AGCCTCCCCGATCGC
*
19762324 CGAAACCCCAACGCCGCCGGTCAGGTTCTTCGGCGATGCT-CCAGCGATGGTGCCTCAACGAAGA
640 CGAAACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTGCC--C--TGGTG----AA-GAA-A
* * *
19762388 AA-AATGCAGTGCCAGCACATGCCCGAACCCAGCATGTGCTACCGCAACCCTCGA-TCTGGTTTG
695 AATAAGGCA---CCAGCACATGCCCAAACCCAGCATGTGCTACCGCAACCCTCGATTC-GGTTCG
* *
19762451 ATCTTAGACTGGGAATGAAC-TCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
756 ATCATAGACTGGGAATGAACTTCC-TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * *
19762515 CCCACGAAACAAGCGTGCGGGCATTTAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGAGGATCAG
820 CCCACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAAGTCG-GGATCAG
19762580 C
884 C
* * * ** *
19762581 TGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTTGGCCCGATCTGATCATAGATT
1 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGCCCGATCTGATCATAGACT
* *
19762646 GGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAAC-GGGCGGGCAGGCGGGCATTACG
66 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGGCGGGC-GGCGGGCATTACG
* *
19762710 CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
130 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
19762775 TTCATATCTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAACCC
195 TTCATAT-TCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCC
* *
19762840 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGATGATTTTTGAAACTTTTTAC
259 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
* * *
19762905 GGTTTGGGATTTTTTTAAATTTTTTTCGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCT
324 GGTTCGGGA-TTTTTTAAAATTTTTTCGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
19762970 TGTATTTTTGTTGGCATGATAAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
388 TGTATTTTTGTTGGCATGA-AAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19763035 CATTTGAAAAAGGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGTAAACC
452 CATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
19763090 CTAAAGCCGT
Statistics
Matches: 1260, Mismatches: 119, Indels: 59
0.88 0.08 0.04
Matches are distributed among these distances:
889 1 0.00
890 7 0.01
891 243 0.19
892 324 0.26
893 43 0.03
894 5 0.00
897 2 0.00
898 250 0.20
899 124 0.10
900 7 0.01
901 6 0.00
902 148 0.12
903 100 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (884 bp):
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGCCCGATCTGATCATAGACT
GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGGCGGGCGGCGGGCATTACGT
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGAAAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTGAAGGGGCTGTGAGTTCTCCAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCAGCCTCCCCGATCGCCGAAACCCCAA
CGCCGCCGGTCAGGTTCTCCGGCGATGCTGCCCTGGTGAAGAAAAATAAGGCACCAGCACATGCC
CAAACCCAGCATGTGCTACCGCAACCCTCGATTCGGTTCGATCATAGACTGGGAATGAACTTCCT
ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTC
AGCCGACCAGAGGGGCGAGATGCGCAAGTCGGGATCAGC
Found at i:19763241 original size:26 final size:26
Alignment explanation
Indices: 19763212--19763264 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763202 CCGGTTCGAT
19763212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19763238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19763264 C
1 C
19763265 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19763776 original size:26 final size:26
Alignment explanation
Indices: 19763740--19763792 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763730 CCGGTCCGAT
19763740 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19763766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19763792 C
1 C
19763793 CTAGGTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19765549 original size:26 final size:26
Alignment explanation
Indices: 19765513--19765565 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19765503 CTGGTTCGAT
19765513 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19765539 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19765565 C
1 C
19765566 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19766444 original size:26 final size:25
Alignment explanation
Indices: 19766408--19766460 Score: 97
Period size: 26 Copynumber: 2.1 Consensus size: 25
19766398 GGTCCAATCT
19766408 TAGACTGGGAATGAACTCGGTATGCC
1 TAGACTGGGAATGAACTC-GTATGCC
19766434 TAGACTGGGAATGAACTCGTATGCC
1 TAGACTGGGAATGAACTCGTATGCC
19766459 TA
1 TA
19766461 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCGTATGCC
Found at i:19767325 original size:26 final size:26
Alignment explanation
Indices: 19767296--19767348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19767286 CTGATCCGAT
19767296 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
19767322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
19767348 C
1 C
19767349 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:19767838 original size:902 final size:900
Alignment explanation
Indices: 19763654--19768469 Score: 6195
Period size: 902 Copynumber: 5.4 Consensus size: 900
19763644 GGCGGGCTCT
* ** *
19763654 ACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
19763719 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * ** *
19763784 TCCGTATGCCTAGGTC-ACCCAGGAAACGAGCGTGCAGTCGCTCATTCGGCCAGAGGGGCAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA-
* * ** **
19763848 TGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTTG
195 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCA
** ** * * *
19763913 GTCCAATCCAATTTTAGAC-GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGA--GTG
260 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTG
* * * * *
19763975 GGCGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGTTGCGCAAGCTGTGGATCGATAGGGTG
325 GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
19764040 GTAGGTGGGTTTAGGCACACCTTCATATTTTTTG-GTGCCAATGCCATTTTTAAGGCTTGTAAAT
390 GTAGGT-GGTTTAGGCACATCTTCATA-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
19764104 TCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCAGGGCAAGACGACTCGTTTTCTATTTTT
453 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** *
19764169 CACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCC
518 CACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCC
* *
19764234 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTC
582 CAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
19764299 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTAC
647 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
19764364 TGGCAGGAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
712 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
19764429 GGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCC
777 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC
* * *
19764494 CCCGGCCCCTCGATCGCTGGAACCCCAATGCCGTC-GGTCAGGTTCCCCGACGATGCTCCG
840 CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACGATGCTCCG
* * * * * *
19764554 ACGATGGTGCCCCGACAAAGAAAAATATGGCATCAGCACATGCCCGAGCCCAGGATGTGCCGCCA
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
19764619 TAACCCTC-A---------ATC-----CT--G--T---CT--G-A-CCTTAGACTGGG-ATGAA-
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
19764656 TATCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGA
131 T-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * **
19764721 TGCCCAAGCCGGGGATTGGCCAGGTCCACCTCTACGTGC---AGATCCTGCTACCGTAACCCTCA
195 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCA
* * *
19764783 GTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
260 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--G
* * * *
19764848 TGGGCGAGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGG
323 TGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
** *
19764913 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTCTGGCTTGTAAA
388 TGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
19764978 TTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACGGCAAGACGACTCGTATTCTCTTTT
452 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*** * * * * * *
19765043 TCACGATTTCCAAAACTTTTTGTGGTTCAAGATTTTTTTAAATTTTTTTGGAAGGATTTTTGGTC
517 TCACGATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTTAAAATTTTTTCGAAGGAGTTTTGGCC
* * * * *
19765108 CCAAACTTTGCAGGCGTGGTCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACT
581 CCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * * *
19765173 CGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAAACAGTTTAATGGCAA
646 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
19765238 TTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGGTTGATGA
711 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
19765303 GGGATAGGGGGCCAATATAAGGGACAAGTACCAGCTCCCATCGCACATCATGTGTGTACACCCCC
776 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
19765368 CCGGCCCCCCGATCGTCGGAACCCCAATACCGTCA-GTCAGGTTCTCCGATGATGCTCCG
841 CCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACGATGCTCCG
*
19765427 ACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
19765492 TAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
19765557 TCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAGTCGGCCAGTGGGGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * *
19765622 GCGCAAGCCGGGGATCGGTC-GGTCCCCCTCTGCCTGCTGTTGATCCTGCTGCTACAACCCTCAG
196 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCAG
* * * * *
19765686 TCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAAAGAGCAGCG
261 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC-GTG
* * *
19765751 GACGGACGGGCGGGCACTACGCCGGCCAGAGTGACGGGATGTGCAAGCCGTGGATCGATA--G-G
325 GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
19765813 GT--G-GGTTTAGGCACATCTTCATATTTCTGCATGCCTATGCCATTTTTATGGCTTGTAAATTC
390 GTAGGTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
19765875 ATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACACGTTTTCTATTTTTCA
455 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
19765940 CGATTTTTAAAAC-TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
520 CGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCA
* *
19766004 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TGAAAAACTCA
584 AACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCG
* * *
19766068 AAGCGTGCAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACT
648 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
19766133 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
713 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
19766198 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCC
778 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
19766262 GGCCCCCCCGATCGTCAGAACCCCAATGCCGCCA-GTCAGGTTCTCCGGA-GATGCTCCGG
843 GG-CCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCC-GACGATGCTCC-G
* * *
19766321 A-GATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * *
19766385 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCGGTATGCCTAGACTGGGAATGAAC
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
19766450 T-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG-GGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *** * ***
19766513 GCGTAGGCCGGGGATCGGCCAGG-ACCCCTCTGCCTGCTACCGATCCTGTTGGTGCAACCCT-AG
196 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCA-
* * *
19766576 GT-AGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGC--G
260 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTG
* *
19766638 GA----CGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
325 GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
19766699 GTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
390 GTAGGTG-GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
19766764 CATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACCCATTTTCTATTTTTC
454 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* *
19766829 ATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCC
519 ACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCC
* *
19766894 AAAC-TAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTC
583 AAACTTA-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
19766958 GAAGTGTACAAGTTTTTGTGACCATTTTAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTAC
647 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
19767023 TGGTACCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAG
712 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
* ** * * * *
19767088 GGATAGGGCGATATTATATGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACA-CCCCC
777 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
19767152 CGGCCGCCCGATCACCGAAACCTCAATGCCG-CAGGTCAGGTTCTCCGGCGATGCTCCG
842 CGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACGATGCTCCG
* * * * * * * * *
19767210 GCAATGGTGCCCCGGCGAAGAAAAATGCGGCAGCAGCACATGCCCAAGCCCAGTAAGGGCTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
19767275 CAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTGGGAATGAAC
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
19767340 TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGCGGTGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
19767405 GCGCAAGTCGGGGATCGACCGGGTCCCCCTTTGTGTGCTGTTGATCCTGCTGCCACAACCCTCGG
196 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCAG
** * *
19767470 TTTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGT
261 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--GT
* * * * *
19767535 GGACGGGCGGGCGGGCATTACGCAGGCTAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGT
324 GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
19767600 GGTAGCTAGGCTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGGGCTTGTAAAA
389 GGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * *
19767665 TCATACAATGATACGTTAGGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTT
453 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * **
19767730 CACGATTTTTGAAACATTTTGTGATTCGGGATTTTTTAAAATTTTTTCGACAGGAGTTTTGGCAA
518 CACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGA-AGGAGTTTTGGCCC
*
19767795 CAAACTTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
582 CAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
19767860 GAAGTGTACAAGATTTTGTGACCATTTAAAAAAAATGTCCCCATTTCAAACATTTTAATGGCTAC
647 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC
*
19767925 TGACAGC-AACCTTGTAAAATCTCAAATGCTCTTT-AAGGGGATGTGAGTTCTCGAGGTTTGATG
712 TGGCAGCAAACC-TGTAAAATCTCAAATGCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATG
* *
19767988 AGGGAGAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
775 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* **
19768053 CCCGGCCCCTCCGATC-CTCGGAACCCAAATGCCG-CAGGTCAGGTTCTCCGTTGATGCTCCG
840 CCCGGCCCC-CCGATCGC-CGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACGATGCTCCG
* * ** * *
19768114 ATGATGGTGCCCTGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
1 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * * * * * *
19768179 TAGCCCTTGGTCCGTTCCGATCTTAGACTAGGAATGAACTCCCTACGCTTAGACTAGGAATGAAC
66 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
19768244 CCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
19768309 GCGTAAGCCGGGGATCGGCCGGGT-CCCCTCTGTGTGCTTTTGATCCT-ATTCCAGTAACCCTCA
196 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCA-CAACCCTCA
* * *
19768372 GTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACGAGC---
260 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTG
* * *
19768434 -A--GACGGGCGGGCACTACGCCGACTAGAGAGACGGGA
325 GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
19768470 CATCTTCATA
Statistics
Matches: 3418, Mismatches: 414, Indels: 173
0.85 0.10 0.04
Matches are distributed among these distances:
870 31 0.01
871 37 0.01
872 1 0.00
873 170 0.05
874 56 0.02
875 443 0.13
876 15 0.00
878 2 0.00
881 1 0.00
883 54 0.02
885 3 0.00
886 3 0.00
887 3 0.00
888 3 0.00
889 5 0.00
890 341 0.10
891 384 0.11
892 109 0.03
893 449 0.13
894 182 0.05
895 32 0.01
896 1 0.00
897 2 0.00
898 7 0.00
899 27 0.01
900 140 0.04
901 74 0.02
902 512 0.15
903 98 0.03
904 233 0.07
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (900 bp):
ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCACAACCCTCAG
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTGG
ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAA
CTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
CCCCCGATCGCCGGAACCCCAATGCCGTCAGGTCAGGTTCTCCGACGATGCTCCG
Found at i:19769363 original size:171 final size:167
Alignment explanation
Indices: 19769077--19769453 Score: 495
Period size: 171 Copynumber: 2.2 Consensus size: 167
19769067 CGGGCGCTCA
** * * * *
19769077 ATCGGCCAGAGAGGTAGGACGCGCAAGCTGGGGATCGGTCGGGTCCCTCTCTGCGTGCTACCGAT
1 ATCGGCCAGAGAGGCGGGATGCGCAAGCTGGGGATCGATCAGGTCCCTCTCTACGTGCTACCGAT
* * * * *
19769142 CCTGCTATCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
66 CCTACTATCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
19769207 AACTGACGAAACAAGCGGGCGGGCGGGCGGACGGGCACTAC
131 AACCGAC--AA-AA-CGAGCGGGCGGGCGGACGGGCACTAC
* * *
19769248 GTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCAGGTCTCC-CTCTACGTGCTGCCGA
1 ATCGGCCAGAGAGGCGGGATGCGCAAGCTGGGGATCGATCAGGTC-CCTCTCTACGTGCTACCGA
* *
19769312 TCCTACTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
65 TCCTACTATCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
19769377 CAACCGACAAAATGAGCGGGCGGGCGGACGGGCACTAC
130 CAACCGACAAAACGAGCGGGCGGGCGGACGGGCACTAC
* * * *
19769415 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
1 ATCGGCCAGAGAGGCGGGATGCGCAAGCTGGGGATCGAT
19769454 AGGGTGTTAG
Statistics
Matches: 180, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
167 57 0.32
168 2 0.01
169 2 0.01
171 117 0.65
172 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (167 bp):
ATCGGCCAGAGAGGCGGGATGCGCAAGCTGGGGATCGATCAGGTCCCTCTCTACGTGCTACCGAT
CCTACTATCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACAAAACGAGCGGGCGGGCGGACGGGCACTAC
Found at i:19770771 original size:26 final size:26
Alignment explanation
Indices: 19770742--19770794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19770732 CCGGTCCGAT
*
19770742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19770768 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19770794 C
1 C
19770795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19771660 original size:26 final size:26
Alignment explanation
Indices: 19771631--19771682 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19771621 CCGGTCCGAT
19771631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19771657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19771683 ACTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19773429 original size:26 final size:26
Alignment explanation
Indices: 19773393--19773445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19773383 CTGAGTTTAT
19773393 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19773419 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19773445 C
1 C
19773446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19775197 original size:26 final size:26
Alignment explanation
Indices: 19775161--19775213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19775151 TTGGTCTGAT
*
19775161 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19775187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19775213 C
1 C
19775214 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19775801 original size:882 final size:884
Alignment explanation
Indices: 19770285--19784929 Score: 16966
Period size: 882 Copynumber: 16.5 Consensus size: 884
19770275 CCAATGCCAT
* * * *
19770285 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCTCCAAACTTGGTAGACA
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
19770350 TCATCCTTGTATTTTTCTTGGCATGCAAAAAAAAAATTCAGCCAAAAACTCGAAGTGTATAAGAT
66 TGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
19770415 TTTGTGATCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
19770480 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAA
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* ** *
19770545 TATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGTTCACACCCCACCCGGCTCCCCCGAT
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCGAT
** * *
19770610 CACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTACGATGATGGTGCCCCGATGAA
323 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT--CG--G----G--GATGGTGCCCCGACGAA
* * * * * ** * *
19770675 GAAAAATGCAGCACCAGCACATTCTCAAGCCTAGCATGTGCTGTAGCAACCCTCGGTCCGGTCCG
378 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
**
19770740 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAAC
443 ATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
19770805 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGC
507 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * * * * * **
19770870 CGTGTCCCCTTCTGCATGCTACCGATCCTGCTGCCGTAACCTTTGGTCCGATCCAATCTTAGACT
572 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* *
19770935 GAGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGTGCACT
637 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-C--G-G-GCACT
* ** *
19771000 ACGCCGACCAGAGAGACGGGACACGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
694 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * ** * *
19771065 ATCTTCATATTTTTACGTGCCAACACCATTTTTGTGGCTTGTAAATTCATACAAGGGTCCCTTAA
759 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
19771130 GCCTTCACGTGAAGTTTCAAGGCAGGACGACTCGTTTTCTCTTTTTCACGATTTTCAAAAC
824 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * **
19771191 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTGGAGCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
19771256 TGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAATCAACTAAAAACTCGAAGTGCACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
19771320 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAG-AAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
19771384 AAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCATT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ***
19771449 ATAAGGGCCAAGTACCAGCAACCATCATGCATCATGTGCGCACACCCCCCGG-CCCCCCGATCGT
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * ** * *
19771513 CGAAACCCCAATACTGTCATTCAGGTTCTC-CGGTGATGGTGCCCCGACGAAGAAAAATGCGGTA
326 CGGAACCCCAATGCCGTCGGTCAGGTTCTCTCGGGGATGGTGCCCCGACGAAGAAAAATGCGGCA
* *
19771577 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCAG-AACCCTCGGTCCGGTCCGATCTTAGACTGG
391 CCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* *
19771641 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAATGAG
455 GAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ** * *
19771706 CGCGCAGGCACTCAGCTGGCCAGAGGGGCGGG-TGAACAAGTCGGGGATCGGTCGGGTCCCCCAC
519 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
** * * *
19771770 TGCGTGCTGTTGAT-CTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTT
584 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * * * *
19771834 TGTATGCCTGAGCCAACCGACAAAATGAGCGGGCAGGCGAGCACTATGCCGGCCAGAGAGAGGGG
649 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
*
19771899 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
714 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
*
19771964 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCAT
779 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
19772029 GGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAAC
844 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * ** * ** *
19772070 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGCTGGAGTTTTTGAACCAAACTTGGTAAACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19772135 TGATCCCTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT-GAAAGTGTACAAGAT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGAT
* * *
19772199 TTTGTGTCCAATTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-AAACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
19772263 TAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAT
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
***
19772328 TATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCCCGG-CCCCCCGATC
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * * * * *
19772392 ATCAGAACCCCAATGCCGTCAGTCAGGTTCT-TCGGTGATGGTGCCTCGACGAAGAAAAATACGG
324 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTCGGGGATGGTGCCCCGACGAAGAAAAATGCGG
* *
19772456 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCT-G---G----T---C--
389 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
19772508 ----TG-------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
454 GGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
19772561 CGTGCGGGCACTCAACCGGCCAGA-GGGCGGGGTGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
519 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * * ** ** *
19772625 TGCATGCTGCCGATCCTGCTACCACAACCTTCAGT-TCAATCCAATCTTAGACTGAGAATGAACT
584 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACT
* * * * * * *
19772689 CCGTATGCCTAAGCCAACCGATGAAACGAGCAGGTGGGCAGGCACAACGTCGGCCAGAGAGGCGG
648 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
19772754 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGAACATCTTCATATTTCTGCATG
713 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
19772819 GCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
778 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* **** *
19772884 TGGCAGGACGACTCGTTTTCTATTTTTTTTTATTTTTGAAAG
843 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
19772926 TTTTTGA-GTTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCGCCAAACGTGGTAGAC
1 TTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
19772990 ATGATCCTTGTATTTTTGTTGTCATGCAAAAAACAAATTCAGCTTCAAAACTCGAAGTGTACAAG
65 GTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGC-TAAAAACTCGAAGTGTACAAG
* * * *
19773055 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAACGGCTACTGGAAGGAAACC
128 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
19773120 TGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGAGGCC
193 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
19773185 AATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCTCGGCCCCCCCGAT
258 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* *
19773250 -GACCGGAACCCCAATGACGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGCTCCAACGATGG
323 CG-TCGGAACCCCAATGCCGTCGGTCAGG-T-T----C--T-CT-C-G-G--G-------GATGG
* * * *
19773314 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCACAACCCT
366 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
19773379 CGGTCTGAGT-TTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCTGTA
431 CGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTA
* * * *
19773443 TGCCTAAGTCAACCCACGAAACGAGCATCCGGGAGCTCAGCCGGCCAAAGGGGCGGGATGCGCAA
494 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
19773508 GCCGAGGATCGATCGGGTCGCTCTATGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGT
559 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT
* * * * *
19773573 CTGATCTTAGACTGGCAGTGAACTCCGTATGACTAAGCGAACCGATGAAACGAGCGGGCGGGCGG
624 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGG
* * * * *
19773638 GCAGGCAGGCACTACACTGGCCGGAGAGACGGGATACACAAGCCGTGGATCGATAGGGTGGTAGG
685 GC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
19773703 TGGGTTTAGGCACATCTTCATATTTCTGTGCGCCAATGCCATTTTCATGGCTTCTAAATTCATAC
746 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
19773768 AATCGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGAT
811 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
**
19773833 TTTCAAAAC
876 TTTTGAAAC
** * * * *
19773842 TTTTTGTGGTTCGAGATTTTTTAAAAATTTTTT-AGAAGGATTTTTGGTCCCAAACTTGGTAGAC
1 TTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19773906 ATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGAT
65 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
19773971 TTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGACAGCAAACTTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
19774036 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAGGTTTGGTGAGGGATAGGGGGCCAA
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
19774101 TATAAGTGACAAGTACCAGCACCCATCCCACATCATGTGTGCACACCGCCCCCTCCGGCCCCCCC
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCC-CCGGCCCCCCC
* * * * * *
19774166 AATC-ACTGAAAACCCAATGCTG-CGGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
320 GATCGTC-GGAACCCCAATGCCGTC-GGTCAGGTTCT-C-TCG--G----G--GATGGTGCCCCG
* * * * *
19774229 ACGAAGAAAAATACGGCACCAACACAAGCCCAAGCCCAGCATGTGCTGCCGAAACCCTCGGTCT-
373 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
19774293 G---G-TC-----C---G-AT---CT--TA-G--T---CTGGGAATGAACTCCGTATGCCTAAGT
438 GTCTGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
19774334 CAACCCACGAAACGAGCGTGTAGGCGCTCAGCCGGCCAGA-CGACGGGATGTGCAAGCCGGGGAT
503 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** * * *
19774398 TGATCGGGTCCCCCTCTGTGTGCTGTTGATCCTGCTACCGTAACCCTCGATCTGGTCTGATCTTA
568 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * * *
19774463 GACTGGTAATGAACTCCGTATGACTAAACCAATCGATGAAACGAGTGGACGGACGGGCGGGCACT
633 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGGCACT
* * *
19774528 ACGCCGGCCAAAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCAC
694 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** * *
19774593 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCCTGTAAATTCATTCAATGGTCCCTTAA
759 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
19774658 GCCTTCATGCGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCCAAGAC
824 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA-AC
* * * * *
19774719 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAACCTTGGAAGATG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
19774784 TGATCCTTGTTTTTTTGTTGGCATGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTAAAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
19774849 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19774914 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *
19774979 ATAAGGGCCAAGTACCAGCACCCATC-CTGCATCATGTGCGCACA-CCCCATGCCCCCCCGATCA
261 ATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* ** ** * * **
19775042 TCGGAACGCCAATGTTGTCGGTCAGGTTCT-TCGGGGATGGCCCCCCGATGAAGAAAAATGTGAA
325 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCTCGGGGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
19775106 ACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGG
390 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* *
19775171 GAATGATCTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAG
455 GAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
19775236 CGTGCGGTCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGCCAGGTCCCCTTC
519 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* ** *
19775301 TGCATGCTGTTGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
584 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * ** * *
19775366 CGTATGCCTAAACCAACTGACGAAATGAGCGGGCGGGCGGGCACTATGTTGGCCAGAGAAACGAG
649 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * * *
19775431 ATGCGCAAGCTGTGGATCGATAGGGTGGTACGTGGGTTTTGGCGCATCTTCATATTTCTGCATGC
714 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
* *
19775496 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACATGAAGTTTCAT
779 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
19775561 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-
844 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
19775601 TTTTTGCGGTTCGGGATTTTTCAAAAATTTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAGAGG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19775666 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGACGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
** * *
19775731 TTAAGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * * * *
19775796 AAAATCTAAAATGCTCTTTAAGAGTGTGTGAGTTGTTGAGCTTTGATGAGGGATAGGGGCCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
19775861 ATAAGGGCCAAGTACCAGAAGCCATC-CTGCATCATGTGCGCACA-CCCCCTGCCCCCCCGATCG
261 ATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
** ** ** * * **
19775924 TCGGAATGCCAATGTTGTCGGTCAGGTTCTC-CGGGGATGGCCCCCCGACAAAGAAAAATGTGAA
325 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCTCGGGGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
19775988 ACCAGCAAATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGT-TCGGTCTGATCTTAGACTG
390 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTG
*
19776052 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTA
454 GGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
19776117 GCGTGCGGTCGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCCAGGGATCGGTCAGGTCCCCTT
518 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* ** * * * *
19776182 CTGCATGCTGTTGATTCTGCTGCCGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACT
583 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * ** * *
19776247 CCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTATGTTGGCCAGAGAAACGA
648 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
19776312 GATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTTGGCACATCTTCATATTTCTGCATG
713 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* * *
19776377 CCAATGCCATTTTTATGGCTTGTAAATTCACAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
778 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
19776442 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
843 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
19776484 TTTTTGCGGTTCGGGATTTTTCAAAAATTTTTCAGAAGGAGTTTTGGCTCCGAACTTGGTAGAGG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
19776549 TGATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
** *
19776614 TTAAGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19776679 AAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
19776744 ATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGGACA-CCCCCTGCCCCCCCGATCGT
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * *
19776808 CGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAA
326 CGGAACCCCAATGCCGTCGGTCAGGTTCT-C-TCG--G----G--GATGGTGCCCCGACGAAGAA
* * * *
19776873 AAATGCAGCACCAGCACATGCTCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATC
381 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* * * *
19776938 TTAGACTAGGAATGAACTCCGTAGGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCCA
446 TTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * ** * * * *
19777003 CGGAACGAGCGTGCGGGCACTTAGGCGGCCAGAGGGGCGGGATGCATAAGCCAGAGATCAGTCAG
510 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * * *
19777068 GTCCCCCTCTGCATGCTGCCGATCCTACTACTGTAA-CCTACAGTCTGGTCTGATCTTAGACTGG
575 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-CGGTCTGGTCTGATCTTAGACTGG
*
19777132 GAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGACGGGACGGGAGGGCGGGCGGGCACTAC
639 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-C----GGGCGGGCGGGCACTAC
* *
19777197 GCCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACAT
696 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
19777262 CTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
761 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
19777327 CTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAAC
826 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
19777386 TTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19777451 GGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
19777515 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAGTGGCTACCGACAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19777580 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
19777645 ATAAGGTCCAAGTACCAGCACCTATCCCACATCATGTGCACACAGCCCCCCCGGCCCCCCCGATC
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATC
* * *** * * *** *
19777710 GCCAGAACCTTTATGTCGCCGGTCAGGTTCTCAATGATTCTCCTACGATGGTGCCCTGACGAAGA
324 GTCGGAACCCCAATGCCGTCGGTCAGG-T-TC------TCT-CGGGGATGGTGCCCCGACGAAGA
* * * * *
19777775 AAAATACGGCACCAGCACATGCCCGA-CCCAGCATGTGGTACTGTAA-CC-C--T-T-G---G--
380 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
19777828 --T---CT-GG--T----T-CGAT-CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCA
445 CTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * ** *
19777879 TGAAACGAGCGTACGGGAGCTCAGTCAGCCAGAGGGGTGGGATGCACAACCCGGGGATCGACCTG
510 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * ** * * *
19777944 GTCCCCCTCTACCTGCTGCCGATCCTGCTGCCGCAACCCTTAGTCCGGTCTAATCTTAGACTAGG
575 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* * *
19778009 AATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCAGGCGGGCGGGCGGGCGGGCAATACG
640 AATGAACTCCGTATGCCTAAGCCAACCGACG--A--A--A--CGAGCGGGCGGGCGGGCACTACG
* ** * *
19778074 CCAGCCAGAGAGACGGGATGCATAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGTACATC
697 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
19778139 TTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
762 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
19778204 TTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCGAAAC
827 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
19778262 CTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGCAATGAGTTTT-GCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
19778326 TGATCCTTGTATATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
66 TGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
**
19778391 TTTGTTTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
19778456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATTGGGGGCCAG
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
19778521 TATAAGAGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAG-CCCCCCGATCG
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
*
19778585 TCGGAACCCCAATGCC-TCCTGTCAGGTTCTC-CGACGATGCTCCGATGACGGTGCCCCGACGAA
325 TCGGAACCCCAATGCCGT-CGGTCAGGTTCTCTCG--G--G----GAT---GGTGCCCCGACGAA
* * **
19778648 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCATCGGTCTGGTCCA
378 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
* *
19778713 ATCTTAGACTGGGAATGAACTCCATAAGCTTAGA-TAGGGAATGAACTCCATATGCCTAAGTCAA
443 ATCTTAGACTGGGAATGAACTCC-TATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * * *
19778777 CCCATAAAATGAGCGTGCGGGTGCTCAGCAGGCCTGAGGGGCGGGATGCGCAAGTCGGGGATCAG
506 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * * *
19778842 CCGGGTCCCCCTCTGCATGCTGTCGATCCTACTACTGCAACGCTCAGTCTTGTCTGATCTTAGAC
571 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * * *
19778907 TGGGAGTGAACTCCATATGCCTAA-CCAACCGAAGAAACAAGCGGGTGGGGGGGCACTACGCCGA
636 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGG
* * * * *
19778971 CTAGAGAGACGGGATGCACAAGCCGTGGATCGACAGGGTGGCATGTGGGTTCT-GGCACATCTTC
701 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTC
* * * ***
19779035 ATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTTTGTTAAGCCTTC
765 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
19779100 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTGTCATGATTTTCGAAAC
830 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
** * *
19779155 TTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
19779220 TGATCCCTGTATTTTT-TCTAGCATGCA-AAATAAAATTGAGCTAAAAACGCGAAGTGTACAAGA
66 TGATCCTTGTATTTTTGT-TGGCATGCACAAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
19779283 ATTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCT
129 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
19779348 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
194 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
19779413 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
259 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* *
19779478 CG-CTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGA
323 CGTC-GGAACCCCAATGCCGTCGGTCAGG-T-T-C-----T-CTC-GGGGATGGTGCCCCGACGA
** * * *
19779542 AGAAAAATATGGCACCAGCACATGCCCTAGCCCAGCAAGTGCTACCGCAA-CC-C--T-T-G---
377 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
* *
19779598 G---TT---C--GG--T---CT--GAT-CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAAC
442 GATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
19779647 CCACGAAACGAGTGTACGGGCACTCAGCCGGCCAGAAGGGCGAGTTACGAAAGCCGGGGAT-GGA
507 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-
* ** ** * *
19779711 TCGGTTCCTTCTCTGCGTGCTATCGATCCTGCTGTCTG-AACCCTTGGTCTGGT-TCGATCTTAG
571 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-CCGCAACCCTCGGTCTGGTCT-GATCTTAG
* ** * * * *
19779774 ATTAAGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACAAGCGGGCGGGTGGGCGGGCGAGC
634 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGC--G-G-GC
* * * * * *
19779839 ACTATGCAGGCTAGAGAGACTGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGCTTTAGG
691 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
19779904 CACATCTTCATATTTCTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
756 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
19779969 TAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
821 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
** * * * *
19780033 TTTTTGTGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGAATACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
19780098 TGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAACTAAAAACTCGAAGTGTACAAAATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
19780163 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACTTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
19780228 AAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
19780293 ATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACAACGCCCCCCGGCCCCCCCAAT
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A--CCCCCCGGCCCCCCCGAT
* * * *
19780358 CGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATCCTCCGGTGATGGTGCCCCGTCGAA
323 CGTCGGAACCCCAATGCCGTCGGTCAGG-T-T-C-----T-CT-CGGGGATGGTGCCCCGACGAA
* ** * * ** *
19780423 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTTGGT-TCAATCC
378 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCT
* * * *
19780487 GATCTTAGACTGGGAATGAATTCCGTAGGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
442 GATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
19780552 CCCACAAAACGAGTGAGCGAGCGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGG
506 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* ** * * * * * * *
19780617 TCGAGTCCCTTTCTGCATGCTACCGATCTTGCTGCCACAACCCTCGATCCGGTCTGGTCTTAGAC
571 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
19780682 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGTGGGCGGGCAC
636 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--------GGGCGGGCAC
* * * * *
19780747 TACGCCGTCCAGAGATACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGTTTTAAGCA
693 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
19780812 CATGTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
758 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
19780877 AGCCTTCATGTGAAGTTGCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
823 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
19780939 TTTTTACGGTTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
1 TTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
19781004 GTGATCATTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGAT
65 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
19781069 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAGACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
19781134 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
19781199 TATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * ** *
19781264 CCGAAACCCCAACT-TCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCTAATGAAG
325 TCGGAACCCCAA-TGCCGTCGGTCAGG-T-T----C--T-C-TCGGGGATGGTGCCCCGACGAAG
* * * ** * * * * * *
19781328 AAAAATGTGACACCAGCACATGCTCGAGCCCAGCATGTTTTGCTGTAACCATCAGTCTGATCCGA
379 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
*
19781393 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
444 TCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
19781458 CACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGATC
508 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * *
19781523 GGGTCCCCCTCTTCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
573 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * *
19781588 AGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGCC
638 GGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCC
*
19781653 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTT
699 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
19781718 CATATTTTTACATGCCAATGCCATTTTTATGGGTTGTAAATTCATATAATGGTCCCTTAAGCCTT
764 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
19781783 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
829 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * ** *
19781839 TTTTTATGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACAAGGTAGAAG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
19781904 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
19781969 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19782034 AAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
19782099 ATCAGGGCCATGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGGCCCCCCCGATCGT
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * *
19782164 CGGAACCCCAGTGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGATGATGGTGCCCC-AGTGAAGA
326 CGGAACCCCAATGCCGTCGGTCAGGTTCT-C-TCG--G----G--GATGGTGCCCCGA-CGAAGA
* ** * * * *
19782228 AAAATGCAGCACCAGCACATGCTTGAGCCCAGAATGTGCTGCCACAACCCTCAGTCCGGTCTGAT
380 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
19782293 CTTAGACTGGGAATGAA---C--T-C-----C---------A-----TATGCCTAAGTCAACCCC
445 CTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * **
19782333 CGAAACGAGTGTGCGGACGCTCAGCCGGCCAAAGGGGAGGGATGCGCAAGCTGGGAATCGACCGG
510 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * * ** ** *
19782398 GTCCCCCTCTGCGTGCTGCCGATCTTGCTACTGGAACCCTCAATCCAGTCCGATCTTAGACT-GG
575 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
*
19782462 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGAGCGGGCGGGCACTACGCCGG
640 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGGGCACTACGCCGG
*
19782527 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCA
701 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
19782592 TATTTTTACGTGCCAATGCCATTTTTATGGCTTG---ATTCATACAATGGTCCCTTAAGCCTTCA
766 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
19782654 CGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
831 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* ** * *
19782708 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACAAGGTAAAAG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
19782773 TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
19782838 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACATTTTAATAGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
19782903 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
19782968 ATCAGGGCCAAGTACCAGCACCCATCACACATTATGTGTGCACACCCCCC--CCCCCCCGATTGT
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * **
19783031 CGGAACCCCAGTGCCGCCGATCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAA
326 CGGAACCCCAATGCCGTCGGTCAGGTTCTCT--C---G----GG-GATGGTGCCCCGACGAAGAA
* * * *
19783096 AAATGCGGCACCAGCACATGCTCGAGCCCAGAATGTGCTGCCGCAACCCACGGTCCGGTCTGATC
381 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
*
19783161 TTAGACT-GG---G-A-----A----T-G-C---------ACTCCGTACGCCTAAGTCAACCCAC
446 TTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
19783201 GAAATGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
511 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * * * * *
19783266 TTCCCCTCTACGTGCTGCCGATCTTGCTGCGGCAACCCTTGATCCGATCTGAACTTAGACT-GGA
576 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* * * * *
19783330 ATGAACTCCATATGCCTAAGCCAACCAACGAAACAAGCAGGCGAGCGGGCGGGCACTACACCGAC
641 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCACTACGCCGGC
* *
19783395 CAGAGAGACGGGATGCGCAAGCCGTCGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCAT
702 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
19783460 ATTTTTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTTAC
767 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
19783525 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
832 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
19783578 ATTTTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
19783643 GGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAGAACTCGAAGTGTACAATATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
19783708 TTGCGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
19783773 AAAATCCCAAATGCTCTTTGAGGGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
19783838 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCCGATCA
261 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG
* * * * **
19783903 CCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGA
325 TCGGAACCCCAATGCCGTCGGTCAGG-T-T----C--T-CT-CGGGGATGGTGCCCCGACGAAGA
* *
19783968 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
380 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * *
19784033 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGAAATGAACTCCGGATGCCTAAGTCAACCC
445 CTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
19784098 ACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGTAA-CTTGAGGAACGGTC
509 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTC
* * * *** * * * *
19784162 GGGTCCCCCTATGCGTGCTGTCTATCCCATTGCCGTAACCCTCGATCTGGT-TCAATCTTGGACT
573 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACT
** *
19784226 GGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGAGTGGGTGGGCAGGCAGGCGGGCAGG
637 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GC--G--GGCGGGCGGG
* * *
19784291 CACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
690 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
19784356 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
755 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** * * *
19784421 TTAAGCCTTTACATGAAGTTTCATGGTGAGATGACTCGTTTTTTATTTTTCACGATTTTCGAAAC
820 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * **
19784486 ATTTTACAGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
19784551 TGATCCTTGTATTTTTATTGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
19784615 TTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATCGCTACTAGCAGCAAACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
19784680 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAA
195 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
19784745 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCATACACCCCCCCTCGG-CCCTCCGA
260 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC--GCACACCCCC-CGGCCCCCCCGA
** * * * *
19784809 TCACCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGCTGATGTTCCGGCGATGGTGCCCTGATGA
322 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT---C------T-CGGGGATGGTGCCCCGACGA
* ** *
19784874 AGAAAAATACGGCACCATTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
377 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
19784930 ATGGGTGTGT
Statistics
Matches: 11968, Mismatches: 1377, Indels: 785
0.85 0.10 0.06
Matches are distributed among these distances:
854 7 0.00
855 107 0.01
856 330 0.03
857 9 0.00
858 77 0.01
859 139 0.01
860 64 0.01
861 2 0.00
862 4 0.00
863 1 0.00
864 4 0.00
865 3 0.00
866 6 0.00
867 394 0.03
868 8 0.00
869 525 0.04
870 385 0.03
871 44 0.00
872 161 0.01
873 252 0.02
874 37 0.00
875 77 0.01
876 431 0.04
877 651 0.05
878 457 0.04
879 266 0.02
880 319 0.03
881 320 0.03
882 885 0.07
883 512 0.04
884 15 0.00
885 3 0.00
886 66 0.01
887 182 0.02
888 38 0.00
889 177 0.01
890 3 0.00
891 7 0.00
892 11 0.00
893 438 0.04
894 311 0.03
895 94 0.01
896 4 0.00
897 8 0.00
898 15 0.00
899 517 0.04
900 263 0.02
901 227 0.02
902 438 0.04
903 153 0.01
904 443 0.04
905 8 0.00
906 445 0.04
907 350 0.03
908 655 0.05
909 110 0.01
910 16 0.00
911 6 0.00
912 9 0.00
913 2 0.00
914 178 0.01
915 9 0.00
916 244 0.02
917 10 0.00
918 6 0.00
919 30 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCTCGGGGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
AATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
Found at i:19776079 original size:26 final size:26
Alignment explanation
Indices: 19776043--19776095 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19776033 TCGGTCTGAT
19776043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19776069 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19776095 C
1 C
19776096 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19778744 original size:26 final size:26
Alignment explanation
Indices: 19778715--19778764 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19778705 CTGGTCCAAT
19778715 CTTAGACT-GGGAATGAACTCCATAAG
1 CTTAGA-TAGGGAATGAACTCCATAAG
19778741 CTTAGATAGGGAATGAACTCCATA
1 CTTAGATAGGGAATGAACTCCATA
19778765 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCATAAG
Found at i:19781430 original size:26 final size:26
Alignment explanation
Indices: 19781394--19781446 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19781384 CTGATCCGAT
19781394 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19781420 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19781446 C
1 C
19781447 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19784085 original size:26 final size:26
Alignment explanation
Indices: 19784033--19784085 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19784023 CCGGTCTGAT
* * *
19784033 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCAGATG
*
19784059 CTTAGACTAGAAATGAACTCCGGATG
1 CTTAGACTAGAAATGAACTCCAGATG
19784085 C
1 C
19784086 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCAGATG
Found at i:19785221 original size:26 final size:26
Alignment explanation
Indices: 19785170--19785222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785160 CCGGTCTGAT
* *
19785170 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19785196 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19785222 C
1 C
19785223 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19786112 original size:26 final size:26
Alignment explanation
Indices: 19786074--19786126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19786064 TCGGTCTGAT
19786074 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19786100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19786126 C
1 C
19786127 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19787003 original size:26 final size:26
Alignment explanation
Indices: 19786967--19787045 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19786957 CTGGTCTGAT
19786967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19786993 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19787019 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19787045 C
1 C
19787046 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19787939 original size:26 final size:26
Alignment explanation
Indices: 19787888--19787940 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
19787878 CCAGTCCGAT
*
19787888 CTTAACTGGGAATGAACTCCGGTATG
1 CTTAACTGGGAATGAACTCCGATATG
19787914 CTTAGACTGGGAATGAACTCC-ATATG
1 CTTA-ACTGGGAATGAACTCCGATATG
19787940 C
1 C
19787941 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAACTGGGAATGAACTCCGATATG
Found at i:19788818 original size:26 final size:26
Alignment explanation
Indices: 19788788--19788841 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
19788778 TTCGTCCGAT
*
19788788 CTTAGACTGGGAATGTACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19788814 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19788840 CT
1 CT
19788842 AAAGTCAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19789578 original size:904 final size:895
Alignment explanation
Indices: 19784952--19795082 Score: 12363
Period size: 893 Copynumber: 11.3 Consensus size: 895
19784942 AAGACGACTC
*
19784952 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
19785017 TACACCCCGCTC-GACCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-A-GTATG
66 CACACCCC-C-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG-ATG
* ** * * * * *
19785079 CTCCGGCGATGTTGCCCCGGTGAAAAAAAATACGACACGAGCACATGCCCGAGCCCAACATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
19785144 TGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAA
193 TGCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
19785209 TGAACTTCATATGCCTAAGTCAACCGACGAAACGAGCATGCGGGTGCTCAACCGGCCAGAGGGGC
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
19785274 GGGATACGCAAGCTGGGGATCGGCCGGGTCCCCC-ATGCGTGCTGCAGATCCCGCTGCCGCAACC
323 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
** *
19785338 CTCGGTCTGGTCTAATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
388 CTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
* * * * ** *
19785403 CGGACGGGTGGGCGGGTGTGCACAAAGCCTTCCAGAGAGACGGGATGCGCAAGCCTTGGATCGAT
451 --G-CGGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
19785468 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACATTTTTATGGCTTG
512 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * *
19785533 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGAAAGACAACTCATTTT-TA
577 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
19785597 TTTTTCATGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTTCGGAAGGAGTTT
642 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTT
* * * *
19785662 TGGCCCCAAACTTGTTAGACGTGATCCTTGTATGTTTGTTGGCATGCTA-AAAACAATTAAGCTA
706 T-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTA
* *
19785726 AAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAA
769 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
19785791 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTGTCGAT
834 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
19785853 GTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAGTACCAGCACCCAATCCGCACATCATGTG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-AT-CGCACATCATGTG
* * *** * * **
19785918 CGCACACCCCACCGGCCCCTTCGATCGTCGGAACCCCAACATCGCCGGTCATGTTCTTCGGTGAT
64 CGCACACCCC-CCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * *
19785983 GCTCCGACAATGGTG-CCCGACAAAGAAAAATACGACACCAGCACATGCCCGAGCCCGAGCATGT
127 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATGT
* * *
19786047 GCGTG--GCAACCCTCGGA-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
191 GC-TGCCGTAACCCTC-GATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
19786109 GGAATGAACTCCGTATGCCTAAGTCAACACAAGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAG
254 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
19786174 GGGCGGGATGCACATGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGTTCCTGCTGCAGC
319 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* *
19786239 AACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
384 AACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
19786304 CGA----GCGGGC---GGGCACTACGCCGTCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
448 CGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * ** *
19786362 GGGTGGTTGGTGGGTTTAGTCACATATTCATATTTCTGCGCGCTAATGCCATTTTTATGGCTTGT
513 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
19786427 AAATTCATACAGTGGTCTCTGAAGCCATT-ACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTA
578 AAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * * **
19786491 TTTTTCACAATTTTTGAAACATTTTACCGTT-TAGGATTTTTTTTAATTTTTTCGGAAGGAGTTT
642 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
19786555 TGGCCCCAAACGTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTAAGCTA
706 T-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTA
* *
19786620 AAGACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
769 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
19786685 TGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
834 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * * *
19786747 GTTTGATGAGGGATAAGGGGCCAATACAAGGGACAGGTACCAGCACCCATTGCACATCATGTTCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * **
19786812 CACACAACCTCCCAG-CCCCTGATCGTCGGAACCCCAATGCCGCCGGTTTGGTTCTCCGACGATG
66 CACAC--CC-CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
** * ** * * * *
19786876 CTCCGATGATGGTTCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGTATGTTC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
19786941 TGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
193 TGCCGTAA--C-C---C---TC-GA--TT---C---G---G---TCCG-AT-CTTAGACTGGGAA
* * *
19787006 TGAACTCCTTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGT
232 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
19787071 ACGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTATGC
297 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* ** ** * * * *
19787136 GTGCTACCGATCCCACTGTTGCAACCCTTGGTTTGGTTCGATCTTAGACTGGGAATGAACTCTGT
362 GTGCTGCCGATCCTGCTGCCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
19787201 ATGCCTAAGCCAACCGA-TAAA--A-CGAGCGGGC---GGGCACTACGCCGGCCAGAGAGACGGG
426 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGG
* *
19787259 ATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGC
491 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
19787324 CAATGCGATTTTTGTGGCTTGTAAATTCATACAATGGTCCCCTTAATCCTTCACGTGAAGTTTCA
556 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
19787389 TGGCAAGAGGACTCGTTTTCTATTTTTAATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
620 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* * * * *
19787454 AAATTGTTTCTGAAGAAGTTTTAGCCCCAAAATTGGTAAACGTGATCCTTGTATTTTTGTTGGCA
685 AAATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
19787519 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGT
749 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
19787584 CCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
814 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
19787649 GTGTGTGAGTTCTCAAG
879 GGGTGTGAGTTCTCGAG
* * * *
19787666 GTTTGACGAGGGATAGGGGTCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * *
19787731 CACACCCTGCTCGGCCCCCCCGATCGCCAGAACCCCAATGTCGTCGATCAGGTTCACCGGCGATG
66 CACACCC--CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
19787796 CTCCGGCGATGCTGCCCCGGCAAAGAAAAAATGCGGCATCAGCACCA-GCCCGAGCCCAGCATAT
128 CTCCGGCGATGGTGCCCCGACGAAG-AAAAATGCGGCACCAGCA-CATGCCCGAGCCCAGCATGT
* * *
19787860 GCTGCCGCAACCCTC-AGTCCAGTCCGATCTTA-ACTGGGAATGAACTCCGGTATGCTTAGACTG
191 GCTGCCGTAACCCTCGA-TTCGGTCCGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTG
* * *
19787923 GGAATGAACTCCATATGCCTAAATCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
254 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * *
19787988 GGGCGGGATGCGCAAGCCAGGGATCAG-CTGGGTCCCCCTCTGCAAGCTACCGATCTTGCTGCTG
319 GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * * * * *
19788052 CAACTCTTGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACCGACAAA
383 CAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
19788117 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
447 ACGAGCGGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *** ** *
19788182 TAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTATGTGCCAATGAAATTTTGATGGCTT
511 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
19788247 GTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
576 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
19788312 ATTTTTCATGATTTTCGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT-TGAAAGACTTT
641 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19788376 TAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
706 T-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
19788441 AAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTCCAAATATTTTAAT
770 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
19788506 GGCTACTGGCAGGAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAG
835 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAG
* *
19788568 GTTTGATGAGGGATAGGGGCCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
19788633 CACACCCCCTCGGCCCCCCCGATCGCCAGAACCCTAATGCCGCCGATCAGGTTCTCCGATGATGC
66 CACACCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
** * ** *
19788698 TCTAGCGATGGTGCCCCGATGAAGAAAAATGCGGCATTAGCACATGCCCGAGCCCAGCATGTGTT
129 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
19788763 GCCATAACCCTCGATTTC-GTCCGATCTTAGACTGGGAATGTACTTCGTATGCTTAGACTGGGAA
194 GCCGTAACCCTCGA-TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
19788827 TGAACTTCGTATG-CTAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGG
258 TGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * * **
19788891 CAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTTTGCATTCTGCTGATCTTGCTGCCATAAC
322 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* *
19788956 CCTCGGTCGGATCCGATCTTAGACTGGGAATCAACTCTGTATGCCTAAGCCAACCGACGAAACGA
387 CCTCGGTCGG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
19789021 GCGGCTGGGCGGGCGGGCGAGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGTCATGGATCGA
451 ---GC-GGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
***
19789086 TAGGGTGGTAGGTGGGTTTAATTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
511 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
19789151 GTAAATTCATGCAATGGTCTCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
576 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
19789216 ATTTTTCATGATTTTTGAAACTTTTTGTGGCTCGAGATTTTTTAAAATTTTTTTGGATGGACTTT
641 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
19789281 TGCCCCCAAACTTGGTAGACGTGA-CCGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
706 TG-CCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
19789345 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
769 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
19789410 TGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAG
834 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19789472 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
19789537 CACAGCCCCCCGGTGCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA---
66 CACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* *
19789599 T---G-G-T--T-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCT
129 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * * *
19789656 GTTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAAT
194 GCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
19789721 AAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGTGCTCAGCCGGCCAAAGGGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * ** * * *
19789786 GGATGCGTATGTCAGGGATCGATCGGGTCCCCCTCTGCGTTTTGGCAATCCTGCTGCCACAACCC
324 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
** * * *
19789851 TCCATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGC
389 TCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
19789916 GGGCGAGCGGGTAGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGT
453 GGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
19789981 GGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
517 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
19790046 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGACGACTCG------A--TTT
582 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
19790103 C-T-ATTTTT----C-----A-----C-A-A-TTTTTGAAACTTTTTCAGAAGGAGTTTTGTCCG
647 CATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-CCC
* * *
19790149 CAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTT
711 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
19790214 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTAC
776 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
19790279 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAG
841 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
19790334 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
19790399 CGCACCCCCCTGGCCCCCCCCGATCACCGGAACCTCAATGTCGTCGGTCAGGTTCTCCGACGATG
66 CACACCCCCC-GG--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
19790464 CTCCGACGATGGTGCCCCGACGAAGAATAACGCGGCACCAGAACATGCCCGAGCCCAGTATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * * * ** **
19790529 TATCGTAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAA
193 TGCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
19790594 TGAACTCCGTATGCCTAAGTCAACCCCACGAAACGAACGCGCGGGCGCTCAGCCGGCCAGAGGGG
258 TGAACTCCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * *
19790659 CGGGATGCACAAGTCGGGGATTGGTCGGGTCCCCCTCTGTGTGTTGCCAATCCTACTACCGCAAC
322 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * * *
19790724 CCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG-ATGCCTAAGTCAATCGACGAAACAA
387 CCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
19790788 GCGGGCGGGCGGGTGGGCACTACGTCGGCCAGACAGACCGGATGCGCATGCCGTGGATCGATAGG
451 GCGGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
19790853 TTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
515 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
19790918 ATTCATACAATGGACCGTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
580 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * **
19790983 TTCGTGATTTTTGAAACATTTTACGGTTCAAGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGTC
645 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-C
* * * * *
19791048 CCTAAACTTGGTAGACGTGATTCTTGTATTTTTTTTGGTATGCATAAAAAAATTCAGCTAAAAAC
709 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
19791113 TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
774 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
19791178 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGATTTCTCGAG
839 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
19791235 GTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
19791300 CACA---------CCCCTGATCGCCGGAACCTCAATGCCACCGGTCAGGTTCTCCGACGATGCTC
66 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* ** * *
19791356 CGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
131 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
19791421 CATAAACCTCTG-TTTGGTCCGATCTTAGACTGGGAATGAACACTGTATGCTTAGACTGGGAATG
196 CGTAACCCTC-GATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * ** *
19791485 AACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGATGGCGCTCAGCCAGCCAGAGGGGCGG
260 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * ** * *
19791550 GATGCACGAGCCGGGGATCGGTCGGGTCCCCCTCTACGTACTATCGATCCTGTTGCTGCAACCCT
325 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* *
19791615 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTG
390 CGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* *
19791680 GACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
454 GGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * ****
19791745 GCAGGTGGGTTTAGGCACATCTTCATATTTCTACATTTTGATGCCATTTTTATGGCTTGTAAATT
518 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
19791810 GATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTC
583 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
19791875 ACGATTTTTGAAACTTTTTGCGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCC
648 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCC
* * *
19791940 AAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCG
712 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
19792005 AAGTGTACAAGATCTTGTGACCATTT-AAAAAAGTGTCCCCATTTAAGATACTTTAATGGCGACT
777 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
19792069 GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-GAGTTCTCGAG
842 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19792122 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * *
19792187 CACACCCCCCCCGGCCCCCCTGATCGTGGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATG
66 CACA--CCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * **
19792252 CTTCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTAAGCCCAGCATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** * * * *
19792317 TACTATAAACCTCTATTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAA
193 TGCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * **
19792382 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGTCAGAAAGAGGGGC
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * ** *
19792447 GGGATGCCCAAGTCGGGGATCGGCCGGGT-CCCCTCTGCATACTATCGATCCTGCTGCTGCAACC
323 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
* * *
19792511 CTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
388 CTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * *
19792576 CGGGCGGGC---GGGCACTACGTCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGT
452 CGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
19792638 -GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAAGGCTTGTAAAT
517 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
19792702 TCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGATGACTCATTTTCTATTTTT
582 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * ** *
19792767 CAGGATTTTCAAAACTTTTTACGGTTCGAGATTCTTTAAAATTTTTTCAAAAGAAGTTTTAGCCC
647 CATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCC
* * * *
19792832 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAACTCAACTAAAAACT
711 CAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
19792897 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTG
775 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
**
19792962 CTGGCAATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
840 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19793018 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
19793083 CATA----CC--CCCCCCGA--GCC----CCCCGAT--CGCCGGACAGGTTCTCCGACGATGCTC
66 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * *
19793134 CGGTGATGGTGCCCCGGCGAA-AAGAAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCTA
131 CGGCGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
19793198 CCGTAA-CC-C---TC-G---G---TT---C--GG--T----T-TG-AT-CTTAGACTGGGAATG
195 CCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * *
19793237 AACTCCGTATGCCTAAGCCATCCCATGAAACGAGCATCCGGGCGCTCAGCCGGCCAAAGGGGTGG
260 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* *** ** * *
19793302 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTTAATTTTGCTGCCGGAACCTT
325 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* * *
19793367 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCG
390 CGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
19793432 GGCAGGTGGGTAGGAGGGCACTACGCCGGCCAGAGAGATGGGATGCACCAGCCCGTGGATCGATA
454 GGC-GG-GCG--GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATA
* * **
19793497 -GGTGGTTAGGTGGGTTTCA-GCTCATCTTCATATTTTTGGCATGCCAATGCCATTTTTATCACT
513 GGGTGG-TAGGTGGGTTT-AGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCT
* * *
19793560 TTTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
575 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * * **
19793625 TATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCATAAGGAGTT
640 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-T
* * *
19793690 TTTGTCCAAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
704 TTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
** *
19793755 AAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAT
769 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
19793820 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
834 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* **
19793882 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATTTCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
19793947 CACACCCCCCCCGGCACCTCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
66 CACA--CCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * *
19794012 CTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
128 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * * * *
19794077 TGTCGCAACCCTTGGTTCGATCTGATCTTAAACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
193 TGCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
19794142 TCAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGCTGGCGGGCGCATCAGTCGGCCAAAAG
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-T-GCGGGCGC-TCAGCCGGCC-AGAG
* * * * *
19794207 GGGTGGGATGCGCACGCCGAGGATCGG-CCGGT--CCCTCTG-GATTCTGCCGATCCTGCTGCCG
319 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG-TGCTGCCGATCCTGCTGCCG
** * * * * *
19794268 CAACCCTCAATCCGGTCCGATGTTAGACTGGGAATGAACTCCGCATGCCTAAGCCGACCGGCCAA
383 CAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * *
19794333 ACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCTAGCCAGAGTGACGGCATGCACAAGCCGTGGA
447 ACGAGCGGGCGGGC----GGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
19794398 TCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATC
507 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * * *
19794463 ACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCTTGCCAAGATGACTTGTT
572 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
19794528 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAATTTTTT-AAATTTTTTCGAAAGG
637 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCGGAAGG
* ** *
19794592 ATTTTTGGCCCCAAACTTGGTAGACGCAATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCA
701 AGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
19794657 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAATAATTGTCCTCATTTCTGACACT
765 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
19794722 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
830 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
19794786 G
895 G
* * * * *
19794787 GTTTGATGAGGGATAGGGGGCCAATATAAGGCCCACGTACCAGCACCCATCTCACGTCTTGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** **
19794852 CACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCTAGTCAGGTTCTCCGACGATGCT
66 CACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* ** * *
19794917 TCAACGATGGCT-TCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
130 CCGGCGATGG-TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
19794981 GCCGCAACCCTTGATCCGGTCCGATCTTAGACTGAGAATGAACTCTGTTTGCTTAGACTGGGAAT
194 GCCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
19795046 GAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
19795083 GGTGAGCGGG
Statistics
Matches: 8028, Mismatches: 976, Indels: 450
0.85 0.10 0.05
Matches are distributed among these distances:
853 90 0.01
854 89 0.01
855 3 0.00
856 2 0.00
860 1 0.00
861 6 0.00
862 301 0.04
863 61 0.01
864 241 0.03
865 162 0.02
866 5 0.00
867 2 0.00
870 4 0.00
871 1 0.00
872 1 0.00
873 8 0.00
874 314 0.04
875 128 0.02
877 1 0.00
878 4 0.00
879 92 0.01
880 2 0.00
881 94 0.01
882 8 0.00
883 2 0.00
884 6 0.00
885 1 0.00
886 2 0.00
887 80 0.01
888 202 0.03
889 675 0.08
890 7 0.00
891 2 0.00
892 73 0.01
893 714 0.09
894 360 0.04
895 252 0.03
896 85 0.01
897 10 0.00
898 108 0.01
899 249 0.03
900 235 0.03
901 564 0.07
902 182 0.02
903 345 0.04
904 558 0.07
905 360 0.04
906 298 0.04
907 96 0.01
908 125 0.02
909 8 0.00
910 15 0.00
911 29 0.00
912 2 0.00
914 1 0.00
915 1 0.00
916 1 0.00
917 5 0.00
918 9 0.00
919 517 0.06
920 189 0.02
921 38 0.00
922 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
GGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
Found at i:19789710 original size:26 final size:26
Alignment explanation
Indices: 19789681--19789733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19789671 TTGGTCCGAT
*
19789681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19789707 CTTAGACTTGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19789733 C
1 C
19789734 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19790605 original size:26 final size:26
Alignment explanation
Indices: 19790555--19790607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19790545 CCAGTTTGAT
**
19790555 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19790581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19790607 C
1 C
19790608 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19791480 original size:26 final size:26
Alignment explanation
Indices: 19791444--19791496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19791434 TTGGTCCGAT
*
19791444 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
19791470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
19791496 C
1 C
19791497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:19792383 original size:26 final size:26
Alignment explanation
Indices: 19792343--19792395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19792333 TCGGTCCGAT
*
19792343 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
19792369 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
19792395 C
1 C
19792396 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:19794132 original size:26 final size:26
Alignment explanation
Indices: 19794103--19794155 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794093 TCGATCTGAT
*
19794103 CTTAAACTGAGAATGAACT-TCGTATG
1 CTTAAACTGAGAATCAACTCT-GTATG
* *
19794129 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAAACTGAGAATCAACTCTGTATG
19794155 C
1 C
19794156 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCTGTATG
Found at i:19796505 original size:26 final size:26
Alignment explanation
Indices: 19796454--19796506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19796444 CCCACCGAAT
*
19796454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19796480 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19796506 C
1 C
19796507 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19798131 original size:26 final size:26
Alignment explanation
Indices: 19798093--19798145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19798083 CTTGTTCGAT
*
19798093 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19798119 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19798145 C
1 C
19798146 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19798847 original size:730 final size:726
Alignment explanation
Indices: 19797211--19799363 Score: 2987
Period size: 723 Copynumber: 2.9 Consensus size: 726
19797201 ACAACCCTCG
*
19797211 GCCCCCCCGATCGTCGGAACCCCAATGCCGTC-AGTCAGGTTCTCCGACGATGCTCCGGCGATGG
1 GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGA-TCAGGTTCTCCGACGATGCTCCGGCGATGG
* * * ***
19797275 CGCCCCGACGAACAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
65 TGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * * *
19797340 CGATCTGGTCTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAA-TAGC-AT
130 CGGTCTTGTCCGATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT--CTGT
* * *
19797403 ATGCCTAAGTCAACCCACGAAACGAGCGTGTGAGTGCTCAGTCGACCAGAGGGGCGGGATGCGCA
193 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGACCAGAGGGGCGGGATGCGCA
* ** *
19797468 AGCCGGGGATCGGCCGGGTCCCCTTCTACGGGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGG
258 AG-CGGGGATCGGACGGGTCCCCTTCTACGTACTGTCGATCCTGCTGCCGCAACCCTC-GTTCGG
* * *
19797533 TTTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAGTCGATGAAACTAGCGGGCGGGCA
321 -TCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCA
*
19797598 GGCGGGCCGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGATGTGTA
385 GGCGGG-CGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGGTG-GTA
19797663 GGGGTGGGTTTAGGCAACATCTTCATATTTCTATGTGCCAA-GCCATTTATTATGGCTTGTAAAT
448 --GGTGGGTTTAGGC-ACATCTTCATATTTCTATGTGCCAATGCCATTT-TTATGGCTTGTAAAT
*
19797727 TCATACAATGGT-CTTTAAGCCTTCACGTGAAGTTTTAATGGCGAGACGATCTCGTTTTCTA-TT
509 TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTT-ATGGCAAGACGA-CTCGTTTTCTATTT
*
19797790 TTCACGATTTTCAAAACTTTTTGGCAGTTCGAGA-TTTTAAAAATTTTTTTGGAAGGTTGTATTT
572 TTCACGATTTTCAAAACTTTTT-GCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGG-TG--TTT
* *
19797854 TGG-CCCACACTTGGTAGACGTGGATCCTTCGTA-TTTTTTTGGCATCCACAAAAAAAATTTTGC
633 TGGCCCCAAACTTGGTAGACGT-GATCC-TCGTATTTTTTTTGGCATGCAC-AAAAAAATTTTGC
19797917 TAAAAAAATCAAAGTGTACAGCCACCCCTCCC
695 TAAAAAAATCAAAGTGTACAGCCACCCCTCCC
* * * * *
19797949 GGCCCCTCGATCGTCGAAACCCCCAATG-CGTCGGTCAGGTTTCTCCGATGATGCTCCGACGATG
1 GCCCCCTCGATCGTCGGAA-CCCCAATGCCGTCGATCAGG-TTCTCCGACGATGCTCCGGCGATG
*
19798013 GTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
64 GTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
19798078 TCGGTCTTGTTCGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
129 TCGGTCTTGTCCGATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
* * * * *
19798143 TGCCTAAGTTAACCCACGAAATGAGCGTGCGGGTGTTCAGTCGGCCAAAAGGGCGGGAATGCGCA
194 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGACCAGAGGGGCGGG-ATGCGCA
* * *
19798208 AGCTGGGGATCGGTCGAGTCCCCTTCTACGTACTGTCGATCCTGCTGCCGTAACCCTCAGTTCGG
258 AGC-GGGGATCGGACGGGTCCCCTTCTACGTACTGTCGATCCTGCTGCCGCAACCCTC-GTTCGG
* * * * *
19798273 TGCGATCTTAGACTAAGAATGAAGTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCAGG-T
321 T-CGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCA
19798337 GGACGGGCGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGCGTGGTA
385 GG-CGGGCGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAG-GTGGTA
19798402 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
448 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
19798467 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACG
513 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACG
*
19798532 ATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAA
578 ATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAA
* * * *
19798597 CTCGATAGACGTTATCGTCGTATTTTTTTTGGCATGCACAAAAAAATTTTGCT-AAAAAATCAAA
643 CTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAAATTTTGCTAAAAAAATCAAA
19798661 GTGTACAG-CACACCCTCCC
708 GTGTACAGCCAC-CCCTCCC
19798680 GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
1 GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
*
19798745 GCCCCGATAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
66 GCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
19798810 GGTCTTGTCCGATCTTATATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
131 GGTCTTGTCCGATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
* * *
19798875 CCTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAATCGACTAGAGGGGCGGGATGCGCAAGC
196 CCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGC
** * * ** *
19798939 CAGGATC-GACTGGGTCCCCCTTGTAC-TAC---CGAT-CTGCTGCTGCAACATTCGGTCTGGTC
261 GGGGATCGGAC-GGGT-CCCCTTCTACGTACTGTCGATCCTGCTGCCGCAACCCTCGTTC-GGTC
* * *
19798998 TGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGG
323 -GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCAGG
* * * ** * * *
19799063 CGGGCGAGCACCACGCTTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTT
387 CGGGCGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATA-GGTGGTAGGT
* * ***
19799128 AGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
451 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
19799193 ATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
516 ATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *
19799258 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
581 TTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTT
* ** *
19799323 GGTAGACGTGATCCTTGTATTTTTGCTGGCAAGCACAAAAA
646 GGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAA
19799364 CATTCAGCAA
Statistics
Matches: 1269, Mismatches: 122, Indels: 63
0.87 0.08 0.04
Matches are distributed among these distances:
722 4 0.00
723 338 0.27
724 7 0.01
726 2 0.00
727 11 0.01
728 19 0.01
729 19 0.01
730 187 0.15
731 53 0.04
732 19 0.01
733 24 0.02
734 15 0.01
735 23 0.02
736 108 0.09
737 44 0.03
738 26 0.02
739 246 0.19
740 124 0.10
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (726 bp):
GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
GCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCTTGTCCGATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
CCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGC
GGGGATCGGACGGGTCCCCTTCTACGTACTGTCGATCCTGCTGCCGCAACCCTCGTTCGGTCGAT
CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCAGGCGGG
CGGGCTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCTTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
AACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAAATTTTGCTAAAAAAATCAAAGTGTACAG
CCACCCCTCCC
Found at i:19800399 original size:894 final size:889
Alignment explanation
Indices: 19798668--19801555 Score: 3553
Period size: 894 Copynumber: 3.2 Consensus size: 889
19798658 AAAGTGTACA
* * * * *
19798668 GCACACCCTCCC-GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATG
1 GCACACCCCCCCGGCCCCC-CGATCCTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATG
**
19798732 CTCCGGCGATGGTGCCCCGATAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
65 CTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * **
19798797 TGCCGCAACCCTCGGTCTTGTCCGATCTTATATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
129 TGCCGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGCAAA
** * *
19798862 TGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAATCGACTAGAGGGGC
194 TGAACTCT-TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAATCGGCTACA-GGG-
* * * *
19798926 GGGATGCGCAAGCCA-GGATCGACTGGGTCCCCCT-T--GTACTACCGAT-CTGCTGCTGCAACA
256 GGGATGCGCAAGCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCGCAACC
* * * *
19798986 TTCGGTCTGGTCTGATCTAAGACTGGGAATGAACTCC-GTATGCCTAAGCCAACCGATGAAACGA
321 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-CCTGTATGCCTAAGCCAACCGATGAAACAA
* **
19799050 GCGGGCGGGCAGGCGGGCGAGCACCACGCTTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
385 GCGGGC--G--GGC--G-G-GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
19799115 TAGGGTGGTAGTTAGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
442 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
*
19799180 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCT
507 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
19799245 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
572 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTT
* * * *
19799310 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCAAGCACAAAAACATTCAGCAAA
636 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGAACAAAAAAATTCAG-TAA
*
19799375 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
700 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19799440 GGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTT
765 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTT
* *
19799505 GATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACAAACACCCATCGCACATCATGTGT
830 GATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACAGACACCCATCGCACATCATGTGC
* * *
19799565 GCACACCCCCCCGACCCCACCGATCCT-GGAACCCCAATGCCGCCAGTTAGGTTCTCCGACAATG
1 GCACACCCCCCCGGCCCC-CCGATCCTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATG
* * * * * *
19799629 CTCCGGTGATGGTGCCTCGGCGAAGAAAAATGTGGCACAAGCACATGCCTGAGCCCAGTATGTGC
65 CTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
19799694 TGCCACAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGCAAA
129 TGCCGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGCAAA
* * * *
19799759 TGAACTCCTTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGTTCAACCGGCTATAGGGGT
194 TGAACT-CTTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAATCGGCTACAGGGG-
* *
19799824 AGGATGCGTAAGCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACC
257 -GGATGCGCAAGCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCGCAACC
* * *
19799889 CTCGGTCCAGTCTGATCTTAGACTAGGAATGAACCCTGTATGCCTAAGCCAACCGACGAAACAAG
321 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACCCTGTATGCCTAAGCCAACCGATGAAACAAG
* * * * * *
19799954 TGGGTGGGCGGGCACTACGCCAGCCAGAAAGACGGGATACGCATGCCCTGGATCGATAGGGTGGT
386 CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
19800019 AGGTGGGTTTAGGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
451 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
19800084 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAC
516 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * * *
19800149 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAA
581 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAA
*
19800213 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGAACAAAAAAATTCAGTGAGAAACTCGAA
645 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGAACAAAAAAATTCAGT-AAAAACTCGAA
*
19800278 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
709 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19800343 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGA
774 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
19800408 TAGGAGGCTAATATAAGGGCCAAGTACCGACACCCATCGCACATCATATGC
839 TAGGGGGCAAATATAAGGGCCAAGTACAGACACCCATCGCACATCATGTGC
* *** * *
19800459 GCACA-CCCCCCGGCTCCCCCGATCAC-CGGAACCGCAACATCGCCGGTCAGGTTCTTCGGCAAT
1 GCACACCCCCCCGGC-CCCCCGATC-CTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAAT
* * *
19800522 GCTTCCACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAGATGCCCGAGCCCAGCATGTG
64 GC-TCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
19800587 CTAACGCAACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGG
128 CTGCCGCAACCCTCAG-TCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT--------
* *
19800651 AATGAAATCCGTATGCTTCGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAACGAA-
184 -A-G--A----T-TG---C-A-----AATGAAC-TCTTATGCCTAAGTCAACCCACGAAAC-AAG
* * * * * *
19800715 CGTGCGGGCACTCAGTCGGCCAGCAGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTC
229 CGTGCGGGCGCTCAATCGGCTA-CAGGG-GGGATGCGCAAGCCAGGGATCGACTGGGTCCCCCTC
* * * * * ** *
19800780 TGCGTGCTACTATTCCTACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTC
292 TGCGTGCTACCAATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACCC
* * * * *
19800845 TGTATGGCTAAGCCAACCGATGAAACAGGCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGA
357 TGTATGCCTAAGCCAACCGATGAAACA----AGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
* * * * * * *
19800910 CGGGATGTGGAAGCCGTTGATCAATAGAGTGGTAGGTGGGCTTAGGCACATCTTCATATTTTTAC
418 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
19800975 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTT
483 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
19801040 TCACGGTAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAGTTTTTGTGGTTCGGGATTTT
548 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * *
19801105 TTAAAAACTTTTTGGAAGGTGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTT
613 TT-AAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTT
* *
19801170 GGCATGCAA-AAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
676 GGCAAG-AACAAAAAAATTCAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
19801234 AGTGTCCCCATTTTAGACAGTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
739 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
19801299 TTAGGGGATATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
804 TAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTA-CAG
19801364 A-ACCCATCGCACATCATGTGC
868 ACACCCATCGCACATCATGTGC
*** ** * *
19801385 GCACACCCCGGTGGCCCCTTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-C--C---G-
1 GCACACCCCCCCGGCCCCCCGATCCTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGC
* *
19801443 ---GCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
66 TCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
19801505 TCGCAACCCTCAGT-CTGGTCTGATCTTGGACTGGGAATAAACTCCGTATGC
131 CCGCAACCCTCAGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
19801556 CTAAGCGAAC
Statistics
Matches: 1722, Mismatches: 206, Indels: 108
0.85 0.10 0.05
Matches are distributed among these distances:
893 21 0.01
894 390 0.23
895 202 0.12
896 2 0.00
897 195 0.11
898 39 0.02
899 23 0.01
900 1 0.00
901 1 0.00
902 10 0.01
903 71 0.04
904 1 0.00
906 1 0.00
910 1 0.00
911 2 0.00
914 2 0.00
915 98 0.06
916 1 0.00
920 158 0.09
921 7 0.00
922 1 0.00
923 1 0.00
924 199 0.12
925 41 0.02
926 242 0.14
927 12 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
GCACACCCCCCCGGCCCCCCGATCCTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGC
TCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGCAAATG
AACTCTTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAATCGGCTACAGGGGGGAT
GCGCAAGCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCGG
TCCGGTCTGATCTTAGACTGGGAATGAACCCTGTATGCCTAAGCCAACCGATGAAACAAGCGGGC
GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCAAGAACAAAAAAATTCAGTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CAAATATAAGGGCCAAGTACAGACACCCATCGCACATCATGTGC
Found at i:19800689 original size:26 final size:26
Alignment explanation
Indices: 19800614--19800692 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
19800604 CCGGTCCGAT
*
19800614 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19800640 CTTAGACAGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19800666 CTTCGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19800692 C
1 C
19800693 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19802247 original size:708 final size:701
Alignment explanation
Indices: 19800801--19802992 Score: 2693
Period size: 708 Copynumber: 3.1 Consensus size: 701
19800791 ATTCCTACTA
* * * * * *
19800801 CCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGGCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGAC
* * * * * *
19800866 GAAAC-A-GGCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGTGGAAGCCGTTG
66 GAAACGACGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
19800929 ATCAATAGAGTGGTAGGTGGGCTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
19800994 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCACGGTAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * **
19801059 TTTCTATTTTTCATGATTTTTGAAAGTTTTTGTGGTTCGGGATTTTTTAAAAACTTTTTGGAAGG
261 TTTCTATTTTTCATGA-TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
* * *
19801124 TGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCA-AAAAGAAATT
325 -ATTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAA-AAATT
*
19801188 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
19801253 GTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGATATGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTC
19801318 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGT
517 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGT
* * * * *
19801383 GCGCACACCCCGGTGGCCCCTTGATCG-TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
582 GCGCAC-CCCCCG-GCCCCCTCGATCGCTAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
*
19801447 TGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
644 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
* * ** * *
19801505 TCGCAACCCTCAGT-CTGGTCTGATCTTGGACTGGGAATAAACTCCGTATGCCTAAGCGAACCGA
1 CCGCAACCCTCGGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGA
* * * *
19801569 CGAAACGAGCGGGCGGGTGGGTGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGTAAGCCG
65 CGAAACGA-C-GGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
19801634 TGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
19801699 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
19801764 TGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCGGGATTTTTTAAAATTTTTTTGGA
258 CGTTTTCTATTTTTCATGATTTT-GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGA
** *
19801829 AGGCATTTTGGCCCCAGTGTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
322 AGG-ATTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
19801894 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
19801959 ACTTAAATAGCTACTAGCAGGAAACCTGTAAAATCTCAAATGCT-TTTCAAGGGGGTGTGAGTTC
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTC-AGGGGGTGTGAGTTC
* * * *
19802023 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGCCCAAGTACCAGTACCCATCGCACATCAA
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCAT
* * * * *
19802088 GTGCGCGTAGCCCCCCGACCCCCCCAATCGCTAGAACCCCAATGTCGCCGGTCAAGTTCTCCGAC
580 GTGCGC--A-CCCCCCGGCCCCCTCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
*
19802153 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
642 GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
* * * * * * *
19802213 CCGTAACGCTCGGTCCTGTCCAATCTTTGACTGGGAATGAACTCCATATGCTTAGACTGGGAA-T
1 CCGCAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA-A--GCGAACC
* ** ** * *** *
19802277 GAACTTTGTATGGCTAAGTCAACCCACGAAATGAGCCTACGGGCACT-CAGCCGGCCAGAGGGGT
63 G-AC---G-A-----AA--CGA-CGGCG-GGTGGGCGGGCGGGCACTAC-GCCGGCCAGA-GAG-
* *
19802341 AC--GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTG
111 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* ** * *
19802404 CGTACCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGT
176 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
19802469 TTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTGAAACATTTTACGGTT-GGCGATTT
241 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTGCGGTTCGG-GATTT
* * *
19802533 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTTATCCTTGTATTTTTTTT
305 TTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTT
* *
19802598 GGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAA
369 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
19802663 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
434 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
19802728 CAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGC
499 CAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGA
**
19802793 ACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCCT
564 ACCCATCGCACATCATGTGCG-CACCCCCCGGCCCCCTCGATCGCTAGAACCCCAATGCCG--C-
* ** * *
19802858 TCAGGTTCTCCGGCGTTGCTCCGACGATGGTGCCCCGGTGAAGAAGAAA-GCGACACCAGCACAT
625 -C-GG---T-CAG-GTT-CTCCGACGATGGTGCCCCGACGAAGAA-AAATACGGCACCAGCACAT
*
19802922 -CCCGAGCCCAGCATGTGCTG
681 GCCCGAGCCCAACATGTGCTG
* * ** * * *
19802942 TCACAACCCTCGGT-CTGGTCTGATCTTAGACTTGAAAAGAACTCCGTATGC
1 CCGCAACCCTCGGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGC
19802993 TTAGACTGGA
Statistics
Matches: 1279, Mismatches: 160, Indels: 73
0.85 0.11 0.05
Matches are distributed among these distances:
703 1 0.00
704 56 0.04
705 1 0.00
706 3 0.00
707 206 0.16
708 387 0.30
709 11 0.01
710 2 0.00
711 6 0.00
714 1 0.00
715 1 0.00
719 31 0.02
720 6 0.00
721 277 0.22
722 178 0.14
723 3 0.00
724 4 0.00
727 1 0.00
728 3 0.00
729 59 0.05
730 39 0.03
731 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (701 bp):
CCGCAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGAC
GAAACGACGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
TTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGC
ACCCCCCGGCCCCCTCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCC
CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
Found at i:19802707 original size:721 final size:726
Alignment explanation
Indices: 19801621--19803082 Score: 2045
Period size: 721 Copynumber: 2.0 Consensus size: 726
19801611 AGAGAGACGG
* * * *
19801621 GATGCGTAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
1 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATA
** *
19801686 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCA
66 CCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
19801751 TGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCGGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTCAAAACATTTTACCGTTCGGGATTTTTTA
* * ** *
19801816 AAATTTTTTTGGAAGGCATTTTGGCCCCAGTGTTGGTAGATGTGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCGAAAGGCATTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
* *
19801881 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
261 AGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGT
*
19801946 CCCCATTTCAGACACTTAAATAGCTACTAGCAGGAAACCTGTAAAATCTCAAATGCT-TTTCAAG
326 CCCCATTTCAGACACTTAAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTC-AG
* *
19802010 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGCCCAAGTACCAGTACC
390 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACC
* *
19802075 CATCGCACATCAAGTGCG-CGTAGCCCCCCGACCCCCCCAATCGCTAGAACCCCAATGTCG-C-C
455 CATCGCACATCAAGTGCGAC--A-CCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCTC
*
19802137 -GG-T-C-AAGTT-CTCCGACGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACATGCCC
517 AGGTTCCGAAGTTGCTCCGACGATGGTGCCCCGACGAAGAAGAAA-GCGACACCAGCACAT-CCC
** * * * *
19802196 GAGCCCAACATGTGCTGCCGTAACGCTCGGTCCT-GTCCAATCTTTGACTGGGAATGAACTCCAT
580 GAGCCCAACATGTGCTGCCACAACCCTCGGT-CTGGTCCAATCTTAGACTGGAAAAGAACTCCAT
** * **
19802260 ATGCTTAGACTGGGAA-TGAACTTTGTATGGCTAAGTCAACCCACGAAATGAGCCTACGGGCACT
644 ATGCTTAGACT-GGAATTGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCCTACGGGCACT
*
19802324 CAGCCGGCCAGAGGGGTAC
708 CAGCCGGCCAGAGGGGCAC
* *
19802343 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGTA
1 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATA
* *
19802408 CCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
19802473 TGGCAAGACGACTCGTTTTCTATTTTTAACGATTTT-GAAACATTTTACGGTT-GGCGATTTTTT
131 TGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTCAAAACATTTTACCGTTCGG-GATTTTTT
*
19802536 AAAATTTTTTCGAAAGG-AGTTTTGGCCCCAGACTTGGTAGACGTTATCCTTGTATTTTTTTTGG
195 AAAATTTTTTCGAAAGGCA-TTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
19802600 CAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGT
259 CAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGT
* * *
19802665 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCA
324 GTCCCCATTTCAGACACTTAAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCA
* * *
19802730 GGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCAC
389 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCAC
* * * * *
19802795 CCATCGCACATCATGTGCGACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCCTTC
454 CCATCGCACATCAAGTGCGACACCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCG-CC-TC
** **
19802860 AGGTTCTCCGGCGTTGCTCCGACGATGGTGCCCCGGTGAAGAAGAAAGCGACACCAGCACATCCC
517 AGG-T-TCCGAAGTTGCTCCGACGATGGTGCCCCGACGAAGAAGAAAGCGACACCAGCACATCCC
* * ** * *
19802925 GAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTTGAAAAGAACTCCGTA
580 GAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGAAAAGAACTCCATA
* * * *
19802990 TGCTTAGACTGGAATTGAACTCCGTATGCCTGAGTCAACCCACGAAACAAGCGTGCGGGCGCTCA
645 TGCTTAGACTGGAATTGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCCTACGGGCACTCA
* *
19803055 GTCGGCCAGAGGGGCAG
710 GCCGGCCAGAGGGGCAC
19803072 GATGCGCAAGT
1 GATGCGCAAGT
19803083 TTGAGATTGG
Statistics
Matches: 650, Mismatches: 72, Indels: 29
0.87 0.10 0.04
Matches are distributed among these distances:
719 31 0.05
720 4 0.01
721 274 0.42
722 156 0.24
723 1 0.00
724 2 0.00
727 1 0.00
728 7 0.01
729 132 0.20
730 39 0.06
731 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (726 bp):
GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATA
CCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTCAAAACATTTTACCGTTCGGGATTTTTTA
AAATTTTTTCGAAAGGCATTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
AGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGT
CCCCATTTCAGACACTTAAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCC
ATCGCACATCAAGTGCGACACCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCTCAGGT
TCCGAAGTTGCTCCGACGATGGTGCCCCGACGAAGAAGAAAGCGACACCAGCACATCCCGAGCCC
AACATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGAAAAGAACTCCATATGCTTA
GACTGGAATTGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCCTACGGGCACTCAGCCGGC
CAGAGGGGCAC
Found at i:19803009 original size:26 final size:26
Alignment explanation
Indices: 19802966--19803018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19802956 CTGGTCTGAT
*
19802966 CTTAGACTTGAAAAGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
**
19802992 CTTAGACTGGAATTGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
19803018 C
1 C
19803019 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTCCGTATG
Found at i:19804797 original size:26 final size:26
Alignment explanation
Indices: 19804761--19804810 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19804751 GTCCGATGTT
19804761 AGACTGGGAATGAACTCTGTATGCTG
1 AGACTGGGAATGAACTCTGTATGCTG
*
19804787 AGACTGGGAATGAACTTTGTATGC
1 AGACTGGGAATGAACTCTGTATGC
19804811 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTG
Found at i:19805334 original size:901 final size:899
Alignment explanation
Indices: 19802343--19808612 Score: 7992
Period size: 899 Copynumber: 6.9 Consensus size: 899
19802333 AGAGGGGTAC
* *
19802343 GATGCGCAAG-TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGT
1 GATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* ** * *
19802407 ACCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTC
65 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
19802472 ATGGCAAGACGACTCGTTTTCTATTTTTAACGA-TTTTGAAACATTTTACGGTT-GGCGATTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTT
* * * *
19802535 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTTATCCTTGTATTTTTTTTGG
194 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
19802600 CAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGT
259 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
19802665 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCA
324 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
19802730 GGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCAC
389 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
19802795 CCATCGCACATCATGTGCG-ACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCCT-
454 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG--CTG
* * ** *
19802858 TCAGGTTCTCCGGCGTTGCTCCGACGATGGTGCCCCGGTGAAGAAGAAA-GCGACACCAGCACAT
517 TCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACAT
* * * * * * *
19802922 -CCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTTGAAAAGAACTC
581 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* *
19802986 CGTATGCTTAGACT-GGAATTGAACTCCGTATGCCTGAGTCAACCCACGAAACAAGCGTGCGGGC
646 CGTATGCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** * * *
19803050 GCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTTTGA-GATTGG-CTGGGTCCCCCTTTGTGTGC
710 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGGTC-GGGTCCCCCTCTATGTGC
* * * * * * *
19803113 TGCCAATCTTGCTACCGCAACCCTTGGTCCGGTCTGATTTTAGACTGGCATTGAACTCCGTATGC
773 TGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** *
19803178 CTAAGCCAACCGACGAAACAAGCGGGAGGACGGGTGGGCGGGCACTACCCCGGCCAGAGAGAC-G
838 CTAAGCCAACCGACGAAACGAGCGGGA-G--GGCAGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
19803242 GATGCGTAAG-TCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTGT
1 GATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* * *
19803306 GCCAATACCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTCAAGTTTC
65 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** * *
19803371 ATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAGGTTCGGGATTTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
* * ** *
19803436 AAAATTTTTCCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGC
195 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
19803501 ATGCACAAAAACATTCACCTAAAAATTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTG
260 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
19803566 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CGGTAAAATCCCAAATGCTCCTTTAA
325 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAA
* * * * *
19803630 GGGGTTGTGAGTTCTCGAGGTTTGATGGGGGATAAGGGGCCGATATAAGAGCCAAGTACCAGCAC
389 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
19803695 CCATTGCACATAATGTGCGCACACACCCCCGGCCCCCCCGATCGCTGCAACCCCAATACCGCTGG
454 CCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCT-G
* * *
19803760 TCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACAT
517 TCAGGTTCTCTGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
** * * *
19803824 GCCCGAGCCCAGCATGTGCTATCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTC
581 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
19803889 CGTATGCTTAAAGTGGGAATGAACTCCATATGCCTAAGTCAACCCACTAAACGAGCGTGCGAGCG
646 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * **
19803954 CTTAGCCAGCCAGAGGGGCGGGATGCACAAGCTGAGGATTGGTCGGGTCCCCCTCTACATGCTGC
711 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGC
* * * * ** *
19804019 TGATCCTACCACC-CAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCAA
776 CGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * *
19804083 AGCCAATCGAC-AAA--A-C--GA--GC-GGGCGGGCACTACATCGGCCAAAGAGATGG
841 AGCCAACCGACGAAACGAGCGGGAGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGG
* **
19804133 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
1 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
* *
19804198 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTGCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** ** *
19804263 TGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTGAAAAGTTTTGTGGTTCGGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
* * * * *
19804328 AAATTTTTTCGGAATGAGTTTTGGTCCCAAAGTTGGTAGACATGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * * * **
19804393 TGCACAAAAAATTTCAGCTAAAAACTCAAACTATACAAGATTTTGTGATCATTTGAAAAAAACGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
19804458 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGG
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * **
19804523 GGGTGTGAGTTCTCGAGATTTTATGAGCAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
391 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
19804588 ATCGCACATAATGTGCGCACACCCCCCGGCCCCCTCGATCGCCAGAA-CCCAATGCCGCATGTCA
456 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC-TGTCA
** * *
19804652 GGGGCTCTTGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
520 GGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
19804717 GAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATGTTAGACTGGGAATGAACTCTGTA
585 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* ** * *
19804782 TGCTGAGACTGGGAATGAACTTTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTTA
650 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * **
19804847 GCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
715 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGAT
* * * * * * *
19804912 CTTACTGCCGCAGCCCTCAG-CCAGTCTAATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCC
780 CCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
19804976 AACTGACGAAACGAGCGGGTGGGCAAGGGGGCGGGCACTACGCCGGCTAGAGAGACAG
845 AACCGACGAAACGAGCGGGAGGGC-A--GGGCGGGCACTACGCCGGCCAGAGAGACGG
** * *
19805034 GATGCGCTGGCTGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATG
1 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
* *
19805099 CTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
19805164 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
* * * ** *
19805229 AAATTTTTTCAGAAGGAGGTTTGACCCCAAACTTCATAGACGTGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
19805294 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
**
19805359 CCCCATTTCAGACGTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
19805424 GGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCC
391 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *** *
19805489 ATCGCACATCATGTGCGCACGCCCCACCGGCCCACCCGATCGTCGGAACCCCAAAATCGTCGGTC
456 ATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CTGTC
* * ** * *
19805554 AGGTTCTCTGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCT
519 AGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
19805619 CGAGCCTAGCATGTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGT
584 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
19805684 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTC
649 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *
19805749 AGCCGGCCAGAGGGGCGAGATGCGCAAGTCGAGTATCGGTCGGGTCCCCCTCTATGTGCTGCCGA
714 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGA
* * * *
19805814 TCCTACTGCTGCTACCCGT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
779 TCCTACTACCGCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
19805878 CCAACCGACAAAATGAGTGGGCGGGC-GGGTGGGCACTACGCCGACCAGAGAGACGG
843 CCAACCGACGAAACGAGCGGGAGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGG
*** * ***
19805934 GACATGCAAG-TCGTGGATGGATAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTGCAA
1 GATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
*
19805997 GCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
65 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
19806062 ATGGCTAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTC-GAGATTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTT
*
19806126 TAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
194 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
19806191 CATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAGT
259 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
19806256 GTCCCCATTTCAGACACTCTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
324 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
19806321 GTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
389 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
19806386 CCATCACACATCATGTGTGCACAACCCCACCGGGCCCCCCGATCGTCGGAACCCCAATGCAGCCG
454 CCATCGCACATCATGTGCGCAC-ACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CT
* * *
19806451 GTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
516 GTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
19806516 GCCCAAGCCAAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTC
581 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * * *
19806581 CATATGCTTAGACTGGGAATGAA-TGTCGTATTCCTAAGTTAACCCATGAAACGAGCATGCGAGC
646 CGTATGCTTAGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
19806645 GCTCAGCCGGCC-TAGGGGCGGGATGCGCAAGCCG-GAGATC-GACTGGGTCCCCCTCTATGTGC
710 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGTC-GGGTCCCCCTCTATGTGC
* ** * * * *
19806707 TACCGATCCTACTGTCGCAACACTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCTTATGC
773 TGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
19806772 CTAAGCCAACCGACGAAACGAGC-GGACGG-ACGGGCAGGCCACTACGCCGGCCA-AGAGACGG
838 CTAAGCCAACCGACGAAACGAGCGGGAGGGCA-GGGC-GGGCACTACGCCGGCCAGAGAGACGG
* *
19806833 GATGCGCAACGCTGTGGATCGAAAAGGTGGTAGGTGGGTTTAGGCCACATCTTCATATTTCTGTG
1 GATGCGCAA-GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTGTG
* *
19806898 TGCCAATGCCATTTTTATGGCTTGTAAATTTCATACAATGGTCCCTTAGGCCTTCTCGTG-AGTT
64 TGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * **
19806962 TCAGGGCAAAGACGACTCGTTTTTTATTTTTCA--ATTTTTGAACCACTTTTTGTGGTTCGAGGA
128 TCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA--ACTTTTTACGGTTC-AGGA
* * * *
19807025 TTTTTTTAAA-TTTTTCGGAAGGA-TTTTGG-GCAACAACTTGGTAGAACGTGATCCTT-TATCT
189 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA-AACTTGGTAG-ACGTGATCCTTGTATTT
* * * * *
19807086 TTGTTGGCATTGTACAAAAAAATTCATCTAAAAACTCAAATTGTACAAGATTTTGTGACCATTGG
252 TTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
19807151 AAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAATCCTCTAAAATCTCAAATG
316 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
19807216 CTCTTTAAGGGAGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGACCAATATAAGGGCCAAGT
381 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
19807281 ACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCTAATG
446 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * ** * ** *
19807346 CCGCCGATCAGGTTCTCCGAAGATGCTCCGACAATGGTGCGTCGACGAAGAAAAATGTGGCACCA
511 CCGCTG-TCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * * * ** *
19807411 GCACATGCCTGAGCCCAGCATATGCTGCTGCAACCATCGGTTCGGTCCGATCTTAAACTATGAAA
575 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
19807476 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACTCACGAAACGAGCGTG
640 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * ** * *
19807541 CGGGTGCTCAGCGGGCCAGAGGGGCGGGATGCCCAAGTCGAGGATCGACCGGGTTCCCCTCTGTG
705 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATG
* * * * *
19807606 TGCTGTCGATCCTACTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGGACTCCGTA
770 TGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * * * *
19807671 GGCCTAAGCCAACCAACGAAACAAGCGAGCGGGC-GGGTGGGCACTGCGCCAGCTAGAGAGACGG
835 TGCCTAAGCCAACCGACGAAACGAGCGGGAGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGG
**
19807735 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
1 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
**
19807800 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCAAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
19807865 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTAGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
* * *
19807930 AACTCTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
19807995 TGCACAAAAAAATTCAACTAAAAACTCGGAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGT
261 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
19808060 CCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGG
326 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
19808125 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCC
391 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
19808190 ATCGCTCGTCATGTATG-GACAACCCCCTCCCCGGCCCCCCCAATCGCCGGAACCCCAATTCCTC
456 ATCGCACATCATG--TGCG-C-A-CACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-G
* * * * *
19808254 CAGTCCGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCAC
514 CTGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* ** *
19808319 ATGCTCGAG-CCAGCATGTGCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
579 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
19808383 TCCGTATTCTTGGACTAGCAATGAACTCCGTATCCTTAGACTAGGAATGAACTCCGTATGCCTAA
644 TCCGTA----T-G-CT-----T--A----G-A--C-T-G----GGAATGAACTCCGTATGCCTAA
* * * * * * * *
19808448 GTCAACCCACGAATCGAGCGTCCGGGCACTCAACCAGCCAGAAGGGCCGGGATGCACAAGCCGGG
683 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGAG
* * * * *** * * *
19808513 GATCGGTCGGGTCTCCCTCTGTGTGCTACCGATCCTGCTGTAGCAACCCTTGGTTCGGTCCGATC
747 GATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATC
19808578 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
812 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
19808613 TGCCATTTTT
Statistics
Matches: 4668, Mismatches: 595, Indels: 185
0.86 0.11 0.03
Matches are distributed among these distances:
889 288 0.06
890 58 0.01
891 410 0.09
892 17 0.00
893 1 0.00
895 1 0.00
896 2 0.00
897 2 0.00
898 22 0.00
899 985 0.21
900 648 0.14
901 752 0.16
902 382 0.08
903 763 0.16
904 165 0.04
905 3 0.00
907 1 0.00
908 1 0.00
909 2 0.00
914 1 0.00
916 1 0.00
920 1 0.00
921 1 0.00
923 1 0.00
924 1 0.00
925 1 0.00
929 53 0.01
930 105 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCTGTCAG
GTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATC
CTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGAGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGG
Done.