Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 109 of 117
Found at i:19805699 original size:26 final size:26
Alignment explanation
Indices: 19805661--19805713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19805651 CTGGTCTGAT
19805661 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19805687 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19805713 C
1 C
19805714 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19808393 original size:26 final size:26
Alignment explanation
Indices: 19808364--19808441 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
19808354 TCCAGTCCGA
*
19808364 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
19808390 TCTTGGACTAGCAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
*
19808416 CCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
19808442 GCCTAAGTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:19809213 original size:26 final size:25
Alignment explanation
Indices: 19809173--19809251 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
19809163 CCAGTCCGAT
*
19809173 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
*
19809199 CTTAGACTGGCAATGAACTCCGTATC
1 CTTAGACTGG-AATGAACTCCGTATG
19809225 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
19809251 C
1 C
19809252 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 2 0.04
26 44 0.92
27 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:19809599 original size:158 final size:159
Alignment explanation
Indices: 19809225--19809592 Score: 458
Period size: 158 Copynumber: 2.3 Consensus size: 159
19809215 ACTCCGTATC
* *
19809225 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTC-CGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG-CACGGGCACTCAG
** **
19809289 CCAACCAGAAGGACCGGGATGCACAAGCCAAGGATCGGTCGGGTCCCCTCTGTGTGCTACAGATC
65 CCAACCAGAAGGACCGGGATGCACAAGCCAAGGATCGACCGGGTCCCCTCTACGTGCTACAGATC
*
19809354 CTGCTGTAGCAACCCTTGGTCCGGTCCGAT
130 CTGCTGTAGCAACCCTTAGTCCGGTCCGAT
* *
19809384 CTTAGACTGGGCATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCACGGGCACTCAGC
** ** * *** *
19809449 CTGCCAG-AGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCTCTACGTGCTGTC-GATC
66 CAACCAGAAGGACCGGGATGCACAAGCCAAGGATCGACCGGGTCCCCTCTACGTGCT-ACAGATC
*
19809512 CTGCTGTCGCAA-CCTTCAGTCCGGTCC-AGT
130 CTGCTGTAGCAACCCTT-AGTCCGGTCCGA-T
* * * *
19809542 CTTGGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
19809593 GGCGGGCAGG
Statistics
Matches: 181, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
157 5 0.03
158 111 0.61
159 65 0.36
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCACGGGCACTCAGC
CAACCAGAAGGACCGGGATGCACAAGCCAAGGATCGACCGGGTCCCCTCTACGTGCTACAGATCC
TGCTGTAGCAACCCTTAGTCCGGTCCGAT
Found at i:19811373 original size:26 final size:26
Alignment explanation
Indices: 19811337--19811415 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
19811327 CCGGTCCAAT
*
19811337 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19811363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
19811389 CTTAGATTATGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19811415 C
1 C
19811416 CTAAGTCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19811679 original size:159 final size:159
Alignment explanation
Indices: 19811399--19811757 Score: 468
Period size: 159 Copynumber: 2.3 Consensus size: 159
19811389 CTTAGATTAT
* * * * *
19811399 GAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTCCGGGCACTCAGCCGGCTAGAGG
1 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
* * *
19811464 GGCGGGATGCACAAGCCGGGGATTGACCGGGTCCCCCTCTACATGCTACCGATCCTACTGT-AGC
66 GGCGAGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTACTATCA-C
*
19811528 AACCCTCGGTCCGGTCCAATGTTAGACTGG
130 AACCCTCGGTCCGGTCCAATCTTAGACTGG
* * *
19811558 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGTGCGCTCAGCCTGCCAGAGG
1 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
* ** ** **
19811623 GGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTATGCTGTCGATCCTACTATCACA
66 GGCGAGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTACTATCACA
* * * * *
19811688 ACCTTTGGTCCGGTCCGATCTTGGACTTG
131 ACCCTCGGTCCGGTCCAATCTTAGACTGG
* *
19811717 GAATGAACTCCATATGCCTAACTCAACCGACGAAACGAGCG
1 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
19811758 GGCAGGCAGG
Statistics
Matches: 173, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
159 172 0.99
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
GGCGAGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTACTATCACA
ACCCTCGGTCCGGTCCAATCTTAGACTGG
Found at i:19813364 original size:26 final size:26
Alignment explanation
Indices: 19813328--19813383 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19813318 CTGGTCCGAT
* *
19813328 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
*
19813354 CTTAGATTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
19813380 CTTA
1 CTTA
19813384 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:19813575 original size:908 final size:899
Alignment explanation
Indices: 19811549--19814399 Score: 3658
Period size: 900 Copynumber: 3.2 Consensus size: 899
19811539 CGGTCCAATG
* * *
19811549 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGTGCGCTCAGCC
1 TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * *
19811614 TGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGT-ATGCTGTCGATCC
66 -GGCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCT-TCATGCTGCCGATCC
* * * * * * * * *
19811678 TACTATCACAACCTTTGGTCCGGTCCGATCTTGGACTTGGAATGAACTCCATATGCCTAACTCAA
129 TGCTACCACAACC-CTCGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGC-CAA
* *
19811743 CCGACGAAACGAGCGGGCA-------GGCAGGGAGGCACTACGCCGGCCAGGGTGACGGGATGCG
192 CCGACGAAACGAGCGGGCAGGGGGCGGGCAGGG-GGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
19811801 CAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
19811866 CCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAA
321 CCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* **
19811931 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTATTCGGGATTTTTTAAAATTT
386 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTT-AAATTT
* * * * *
19811996 TTTTGGAAGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGAATTTTT-TTGGCACGTACA
450 TTTTGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
19812060 AAAAAATTCAGCTAAAAACTCCAAGTTTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
19812125 TTTAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
19812190 GAGTTCTCGAGGTTTGATGCGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCC-ATCAC
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAGCAC
* * *
19812254 ATAACATGTGCGCACACCCACCCCGGCCCCCTTGATCG-CCGAAACCACAATACCGTCGATCAGG
710 AT--CATGTGCGCACA-CC-CCCCGGCCCCCTCGATCGTCGGAAACC-CAATGCCGTCGATCAGG
* * * * *
19812318 TTCT-TCGGC-ATGCCCCGGCGATGGTGCCTC-AGCGAAGAAAAATGTGGCACTAGCACATGCCC
770 TTCTCT-GACGATGCTCC-GCGATGGTGCCCCGA-CGAAGAAAAATGTAGCACCAGCACATGCCC
* * ** * *
19812380 GAGCCTAGCATGTGCTGCCGTAACCCTCAATCTGGTCCGATCATAGACTGGGAAATGAACTCCGT
832 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-AATGAACTCTGT
19812445 ATGC
896 ATGC
* * * * *
19812449 TTAAACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * * * *
19812514 GGCCAGAGGGGCAGGATACGTAAGCCGGGGATCGGCCTGGTCCTCCTCTGCATGCTGCCGATCCT
66 GG-CAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTCATGCTGCCGATCCT
* ** * * * * *
19812579 GCTGCCGTATCCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
130 GCTACCACAACCCTCG-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCT-AGCCAAC
* * * ** * * ** *
19812644 CGATGAAATGAGTGGGTGGGCGGGCGGACGGGCGGGCACTACATCGACCAGAGAGACGGGATGCG
193 CGACGAAACGAGCGGGCAGG-GGGCGGGCAGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * **
19812709 CAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTACATATTTCTGTGTGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * **
19812774 CCATTTTTTTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAACTTTCATCACAA
321 CCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * **
19812839 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTCAAGATTTTTTAAATTTT
386 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTT
* * **
19812904 TTTGGAAAGAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTTGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
19812969 AAAAATTCAGCTAAAAACTCGAAGTGTACTAGATTTTGTGGCCATTTGAACAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
19813034 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
19813099 AGTTCTTGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAAGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-AAGCAC
* * *
19813164 ATGATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTC
710 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAAACCCAATGCCGTCGATCAGGTTCTC
* *
19813229 TGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAATTGCAGCACCAGCACATGCCCGAGCCCA
775 TGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCA
* * *
19813294 GCATGTGCTACCGCAACCCGCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATGC
839 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
* * * * *
19813355 TTAGATTGGGAATGAAATTCGTATGCTTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAACC
1 TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * ** * * * *
19813420 GGCTGAGGGGCGGGATACACAAGCTAGGGATCGATCGGGTCCCCCT-TTCGTGCTGCCAATGCTG
66 GGCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTCATGCTGCCGATCCTG
*
19813484 CTACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATTAACTCCGTATGCCTAGGCCAACC
131 CTACCACAACCCTC-GTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA-GCCAACC
* * *
19813549 GACGAAACGAGCGGGCAGGCGGGCGGGCA---AGCACTACGCCGGCCACAGAGATGGGATGCGCA
194 GACGAAACGAGCGGGCAGG-GGGCGGGCAGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
19813611 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
19813676 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
19813741 CAACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGTGGTTCGGGATTTTCTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTT-TTAAATTTTT
* *
19813806 TTGGAAGGACTTCTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACATAA
452 TTGGAAGGACTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19813870 AAAAATTTAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
19813935 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAAGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19814000 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-AGCAC
* *
19814065 ATCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTC
710 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAAACCCAATGCCGTCGATCAGGTTCTC
* * ** *
19814129 CGATGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCA
775 TGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCA
* * ** *
19814194 ACATGTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGC
839 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
* * * * * * * *
19814255 TTAGATTGGGAATGAACT-CGTATGCCTAAGTC-ACCCTACAAAATGAGCTTGCGGCCACTCAGT
1 TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTACGGGCGCTCAG-
* * * * ** * * * * *
19814318 CAGCCAAAGGGGCAGGATGTGCAAGCCGGGGATCAGTCGCGTCCCCCTCTACGTGCTGCTGATCC
64 CCGGCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTCATGCTGCCGATCC
*
19814383 TGCTGCCACAACCCTCG
129 TGCTACCACAACCCTCG
19814400 GTTGGGTGGT
Statistics
Matches: 1677, Mismatches: 245, Indels: 58
0.85 0.12 0.03
Matches are distributed among these distances:
898 4 0.00
899 34 0.02
900 556 0.33
901 299 0.18
902 2 0.00
903 1 0.00
904 88 0.05
905 35 0.02
906 108 0.06
907 151 0.09
908 392 0.23
909 1 0.00
910 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
TTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GGCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTCATGCTGCCGATCCTG
CTACCACAACCCTCGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGCCAACCGA
CGAAACGAGCGGGCAGGGGGCGGGCAGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTGG
AAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAGCACATCATG
TGCGCACACCCCCCGGCCCCCTCGATCGTCGGAAACCCAATGCCGTCGATCAGGTTCTCTGACGA
TGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
Found at i:19814264 original size:26 final size:25
Alignment explanation
Indices: 19814228--19814279 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19814218 CCAGTCCAAT
19814228 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
*
19814254 CTTAGATTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
19814279 C
1 C
19814280 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:19815154 original size:777 final size:777
Alignment explanation
Indices: 19813626--19815178 Score: 2384
Period size: 777 Copynumber: 2.0 Consensus size: 777
19813616 TGGATCGATA
* *
19813626 GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGT
*
19813691 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTAT
** * * *
19813756 TTTTCACGATTTTGGAAACTTTTTGTGGTTCGGGATTTTCTAAAATTTTTTTGGAAGGACTTCTT
131 TTTTCACGATTTTCAAAACTTTTTATGGTTCAGAATTTTCTAAAATTTTTTTGGAAGGACTTCTT
* *
19813821 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACATAAAAAAATTTAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAA
*
19813886 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
19813951 CTACTAGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
326 CTACTAGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
*
19814016 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
391 AGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
19814081 CCCCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGATGATGCTCCGACGA
456 CCCCGGCCCCCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGA
** ** * *
19814146 TGGTGCCCCGGGGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCACAAC
521 TGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAAC
* *
19814211 CCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCGT
586 ACTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCGT
* * *
19814276 ATGCCTAAGTCACCCTACAAAATGAGCTTGCGGCCACTCAGTCAGCCAAAGGGGCAGGATGTGCA
651 ATGCCTAAGTCACCCTACAAAACGAGCGTGCGGCCACTCAGTCAGCCAAAGGGGCAGGATGCGCA
* *
19814341 AGCCGGGGATCAGTCGCGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTT
716 AGCCAGGGATCAGTCGCGTCCCCCTCTACATGCTGCTGATCCTGCTGCCACAACCCTCGGTT
*
19814403 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-AAGTGCCAATGCCATTTTTATGGCTTG
1 GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGAA-TGCCAATGCCATTTTTATGGCTTG
* * *
19814467 TGAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
65 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTA
*
19814532 TTTTTCACGATTTTCAAAACTTTTTATGGTTCAGAATTTTTTAAAATTTTTTTGGAAGG-CGTT-
130 TTTTTCACGATTTTCAAAACTTTTTATGGTTCAGAATTTTCTAAAATTTTTTTGGAAGGAC-TTC
**
19814595 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTA
194 TT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTA
19814660 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAA
258 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
19814724 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTT
323 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAAGGGGTGTGAGTTCTCGAGGTT
*
19814789 TGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCGCACATCATGTGCGCAC
388 TGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
19814854 ACCCCCCGGTCCCCCAATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCC-AGCGGTGCTCCG
453 ACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGA-CGATGCTCCG
* * * *
19814918 ACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCG
517 ACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCTACCA
* ** ** * *
19814983 TAACACTCGGTCTGGTCTGATCTTCGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAAC
582 CAACACTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
* * * *
19815048 TCTGTATGCCTAAGTCAACCC-ACAAAACGAGCGTGCGGGCGCTCAGTCGAG-CAGAGGGGCGGG
647 TC-GTATGCCTAAGTC-ACCCTACAAAACGAGCGTGCGGCCACTCAGTC-AGCCAAAGGGGCAGG
* * * * * * *
19815111 ATGCGCAAGCCAGGGAT-TGATCGGGTCCCGCTCTGCATGCTGCTGATCTTGCTGTCACAACCTT
709 ATGCGCAAGCCAGGGATCAG-TCGCGTCCCCCTCTACATGCTGCTGATCCTGCTGCCACAACCCT
19815175 CGGT
773 CGGT
19815179 CTGGTCTGAT
Statistics
Matches: 702, Mismatches: 66, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
775 1 0.00
776 326 0.46
777 369 0.53
778 6 0.01
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (777 bp):
GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTAT
TTTTCACGATTTTCAAAACTTTTTATGGTTCAGAATTTTCTAAAATTTTTTTGGAAGGACTTCTT
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTAGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGA
AGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAAC
ACTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCGT
ATGCCTAAGTCACCCTACAAAACGAGCGTGCGGCCACTCAGTCAGCCAAAGGGGCAGGATGCGCA
AGCCAGGGATCAGTCGCGTCCCCCTCTACATGCTGCTGATCCTGCTGCCACAACCCTCGGTT
Found at i:19815936 original size:26 final size:26
Alignment explanation
Indices: 19815907--19815959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19815897 CCGATCTGAT
19815907 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19815933 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19815959 C
1 C
19815960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19816839 original size:26 final size:26
Alignment explanation
Indices: 19816810--19816862 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19816800 CTTGTCCGAT
19816810 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19816836 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19816862 C
1 C
19816863 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19818829 original size:904 final size:901
Alignment explanation
Indices: 19814403--19819684 Score: 7313
Period size: 903 Copynumber: 5.9 Consensus size: 901
19814393 ACCCTCGGTT
*
19814403 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* * *
19814468 GAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
19814533 TTTTCACGATTTTCAAAACTTTTTATGGTTCAGAATTTTTTAAAATTTTTTTGGAAGGCGTTTTG
131 TTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTG
* * *
19814598 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAA
195 GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
*
19814663 ACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGG
260 ACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
19814727 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
19814792 AGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCGCACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
19814857 CCCCGGTCCCCCAATCATCGGAACCCCAATGTCGC-CGGTCAGGTTCTC-CAGCGGTGCTCCGAC
455 CCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCTCGGTCAGGTTCTCTGA-CGATGCTCCGAC
* * **
19814920 GATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCGTA
519 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTA
* * * * **
19814985 ACACTCGGTCTGGTCTGATCTTCGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTC
584 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
19815050 TGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGAG-CAGAGGGGCGGGATG
649 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG-GCCAGAGGGGCGGGATG
* * ** * * * * * * *
19815114 CGCAAGCCAGGGATTGATCGGGTCCCGCTCTGCATGCTG-CTGATCTTGCTGTCACAACCTTCGG
713 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCAG
* *
19815178 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGTGGGC
777 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * *
19815243 GGACGGGCGGGCGGGCACTACGTAGGCCATAAAGATGGGATGCGCAAGCCATGGATCGATA
842 GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
19815304 GGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* * * * * *
19815369 AAATTCATACAATGGTCCCTTTAAGACTTCATGCGAAGTTTCTTGACAAGATGACTCGTTTTCTA
66 AAATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* ** * * *
19815434 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAAATTTT
130 TTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-TGAAGGAGTTTT
* * * * * * **
19815499 GGCCTCAAACTTGGTAGTCGTGATCCTTGAATTTTTGTTGGCATGCACAGAACTATTCAGCTAAA
194 GGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAA
* *
19815564 AACTCGAAATGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATG
259 AACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
19815629 GCTACTGGTAGCAAACTTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
19815694 ATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACAC
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
19815759 ACCCCGGCCCCCCGATTGTCAGAACGCCAATG-CTG-TCGATCAGGTTCTC-CACCGATGCTCCG
454 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGTC-GCTCGGTCAGGTTCTCTGA-CGATGCTCCG
** * * * * * *
19815821 GTGATGGTGCCCTGACGAAGAAAAATGCAGCACCACCACATGCCCGTGCCTAGTATGTGCTGCTG
517 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCG
* * * *
19815886 TGACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
582 TAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
19815951 TCCGTATGCCTAAGTCAACCCATGAATCAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
647 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * * ** * *
19816016 ACGCAAGCCGGGGATCGACTGGCTTTCCTTCTGCGTGCTGTCGATCCTACTATCGCAACCCTCAG
712 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAG
* * * * *
19816081 TTTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGC
777 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * *
19816146 GGGCGGGCAGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCCTGGATCGATA
842 -GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
19816207 GGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTCTTGTGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
*
19816272 AAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
19816337 TTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTTGACGGAGTTTTG
131 TTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTTGAAGGAGTTTTG
*
19816402 GCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
195 GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
19816467 ACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATAG
260 ACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
19816532 CTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTCTGAGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
19816597 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * *
19816662 CCCCCGGCCCCCCGATAGCCGGAACCCCAATG-C-CATCGGTCAGGTTCTCCGACGATGCTCCGG
454 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGC-TCGGTCAGGTTCTCTGACGATGCTCCGA
* * * * * *
19816725 TGATGGTGTCCCGACAAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGC
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGT
* *
19816790 AACCCTTGGTCTTG-TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
583 AACCCTCGGTC-TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
19816854 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGAT
647 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* ** * * * * *
19816919 GCGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGCTTGCTATCGATCCTACTA-CTACAACCCTCG
712 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATC-GCAACCCTCA
* * *
19816983 GTCTGGTCTAATCTTAGACTGGAAATGAACT-TCGTATCCCTAAGCCAACCGACGAAACGAGC--
776 GTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
19817045 G-GGCGGACGGGCAGTCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATA
840 GCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * * *
19817106 GGGTGGTAGGTGGGTTTACGTACATCTTCGTATTTCTATGTGCCAATGCCATTCTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* *
19817171 AAATTCGTACAATGGT-CCTTCAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA
66 AAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * ** * *
19817235 TTATTCACGATTTTCAAAACTTTTTGCCGTTCGAGA-TTTAAAAAATTTTTTTTTGACGAAGTTT
130 TTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA--TTTTTTTGAAGGAGTTT
*
19817299 TGGCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAA
193 TGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAA
*
19817364 AAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
258 AAACTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
19817428 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTT
322 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
19817493 TGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
387 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * * *
19817558 A----CC--CAACCCGATCGTCGGAACCCTAATGTCG-TCAGTTAGGTTCTCTGACGACGCTCCG
452 ACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCTCGGTCAGGTTCTCTGACGATGCTCCG
* * * * * *
19817616 ACGATGGTGTCCCGATGAAGAAAAATGCGGCACTAGCACTTGCCCGAGCCTGGCATGTGCTACCG
517 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCG
* * * * * *
19817681 TAATCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCCTCTGCTTAGAATTGGAATGAAC
582 TAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
19817746 TCCATATGCCTAAGTCAACCCATGAAACGAGCTTGTGGGTACTCAACCGGCCAGAGGGGTGGGAT
647 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * *
19817811 GCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGTGTGCTG-CTGATCCTGCTGTCGCAACCCTC-
712 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCA
* *
19817874 GATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
776 G-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGG
19817939 GCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
840 GCG-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
19818002 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
*
19818067 AAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * * *
19818131 TTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAAAATTTTTTTGATGGAGTTTTG
131 TTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTTGAAGGAGTTTTG
* * *
19818196 GCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCTTGGCATGCACAAAAACATTCAACTAAAA
195 GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
19818261 ACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGG
260 ACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
19818326 CTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
19818391 TGAGGGATACGGGGCCAATATAATGGCCAAGTACCAGCACCCATCCCACATTC-TGTGCGCACAC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA-TCATGTGCGCACA-
* * * *
19818455 CCCACCCGGCCCCACCAATCGTCGGAACCACAATGTCGCT-GGTCAGGTTCTCTTACGATGCTCA
453 CCC-CCCGGCCCC-CCGATCGTCGGAACCCCAATGTCGCTCGGTCAGGTTCTCTGACGATGCTCC
* *
19818519 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCC-CGACATGTGCTGC
516 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAG-CATGTGCTGC
* * *
19818583 CGTAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTTCC-TACGCTTAGACTGGGAATG
580 CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATG
** *
19818647 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGG
644 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGG
* *
19818712 GATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTATCGCAACCCT
709 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCT
* ** * *
19818777 CAGTCCGGTCCAATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCA
774 CAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
19818842 GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGTGCAAGCCGTGGATCGATA
839 GGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
19818906 GGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
19818971 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
19819036 TTTTCACGATTTTCAAAACTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTG
131 TTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTG
* * *
19819101 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAA
195 GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
19819166 ACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
260 ACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * *
19819231 CCACTGGCAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGAGTGAGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
19819296 TGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGAACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
19819361 CCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGC-CGATCAGGTTCT-TCGGCGATGCTCCGA
455 CCCCG-GCCCCCCGATCGTCGGAACCCCAATGTCGCTCGGTCAGGTTCTCT-GACGATGCTCCGA
* * * * *
19819424 CGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATTTGCTGCCGC
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGT
* *
19819489 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
583 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * ** *
19819554 CCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGCACTCAGTGGGCCAAAGGGGCGGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATG
* * * ** *
19819619 CGCAAGCCGGGGATCGGCCGGGTCCCCCTGTGCGTGCTGCCAATCCTGCTGCCGTAACCCTCAGT
713 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAGT
19819684 C
778 C
19819685 CTGCTGCCAA
Statistics
Matches: 3891, Mismatches: 432, Indels: 114
0.88 0.10 0.03
Matches are distributed among these distances:
891 4 0.00
892 312 0.08
893 2 0.00
894 3 0.00
895 285 0.07
896 176 0.05
897 8 0.00
898 14 0.00
899 466 0.12
901 82 0.02
902 514 0.13
903 1210 0.31
904 530 0.14
905 285 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGG
CCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCTCGGTCAGGTTCTCTGACGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAAC
CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAGTCTG
GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCG
GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
Found at i:19819538 original size:26 final size:26
Alignment explanation
Indices: 19819509--19819561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19819499 CTGGTCCGAT
19819509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19819535 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19819561 C
1 C
19819562 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19820304 original size:26 final size:26
Alignment explanation
Indices: 19820253--19820305 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19820243 CCGGTCTGAT
* *
19820253 CTTAGACTGGGAATGACCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19820279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19820305 C
1 C
19820306 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19822019 original size:903 final size:902
Alignment explanation
Indices: 19819685--19824310 Score: 6122
Period size: 903 Copynumber: 5.1 Consensus size: 902
19819675 ACCCTCAGTC
* * * * *
19819685 CTGC-TGCCAATGCCATTTTTATGGCTTGTAGATTCATGCAACGGTCCCTTAAGCCTTCCCGCGA
1 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* **
19819749 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA
66 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
* * *
19819814 TTTTTTAAAATTTTTT-TGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTT
131 TTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
19819878 TGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
196 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * **
19819943 AAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTCGTTGCAAACCTGTAAAATCTCAAATGCT
261 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
19820008 CTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAT
326 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
19820073 CAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCCTGATCGACGGAACCCCAATGC
391 CAGCACCCATCGCACATCATGTGCGCACACCCCCCA-ACCCCCCCGATAGTCGGAACCCCAATGC
** * *** * * * * *
19820138 CGCCGGTCAGGTTCTCCAACGATGCTCCGACGATAGTGCCCCGGCAAAGAAAAATGCGGCACCAG
455 CATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
*
19820203 CACATGCCCAAGCCCAGCATGTGCTACCGCAAACCTT-GGTCCGGTCTGATCTTAGACTGGGAAT
520 CACATGCCCAAGCCCAGCATGTGCTACCGC-AACCTTCGATCCGGTCTGATCTTAGACTGGGAAT
* * ** * *
19820267 GACCTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAATGAGCGTA
584 GAACTCCATATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
19820332 CGGGTGCTCAGCCGGCCAGAGTGCCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCACTCTGCA
648 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * * * ** **
19820397 TGCTATCGATCTTGCTGCT-GCAACACTCGATCCAATTTGATCTTAGACTGA-GAATGAACTCCG
713 TGCTATCGATCTTG-TTCTCGCAACCCTAGGTCCGGTCCGATCTTAGACT-ATGAATGAACTCCG
* * * * **
19820460 TATGCCTAAGCCAACCAACGAAACGAGCAGGCGGGTGGCCAGGCGGGCACTTTGCCGGCCAGAGA
776 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGA
* *
19820525 GACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTG
840 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
19820588 CTGCATGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
1 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
** * *
19820653 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTTCAGGTTCGGGA
66 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
* *
19820718 TTTTTTAAAATTTTTT-TGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTT
131 TTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
19820782 TGTTGGCATGCACAAAAAATTTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAA
196 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
19820847 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
261 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
19820912 CTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAGGTAC
326 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
19820977 CAGCACCCATCGCACATCAAGTGCGCACACCCCCTCAACCCCCCCGATAGCCGGAACCCCAATGC
391 CAGCACCCATCGCACATCATGTGCGCACACCCCC-CAACCCCCCCGATAGTCGGAACCCCAATGC
* * *
19821042 CATCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
455 CATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
* * * *
19821107 CACATGCCCTAGCCCAGCATGTGCTGCCGTAACCTTCGATCTGGTCTGATCTTAGACTGGGAATG
520 CACATGCCCAAGCCCAGCATGTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATG
* *
19821172 AACTCCATATGCTTAGACTAGGAATGAACATCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
585 AACTCCATATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
19821237 GGGCGCTTAGCCGGCCAGAGGGGCGGGACGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGT
649 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGT
* * *
19821302 GCTGTCAATCTTGTTCTCGCAACCCTAGGTCTGGTCCGATCTTAGACTATGAATGAACTCCGTAT
714 GCTATCGATCTTGTTCTCGCAACCCTAGGTCCGGTCCGATCTTAGACTATGAATGAACTCCGTAT
* *
19821367 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGAGCACTACACCGGCCAGAGAGAC
779 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGAC
** *
19821432 GGGATGCTTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
843 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * ** *
19821492 CTGCGTGCCAATGCCAATTTTAGGGCTTGTAAACCCATACAATGGTCTCTTAAGCCTTCACGTGA
1 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
19821557 AGGTTCATGGCAAGACAATTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAGGTTCGGGA
66 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
* *
19821622 TTTTTTAAAATTTTTTCAGAAAAG-GTTTT-GCCCAAAACTTGGTAGACGTGATCCTTGTATTTT
131 TTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
19821685 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGACCATTTGAA
196 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
19821750 AAAAGTGTCCCTATTTCAGACACTTTAATGGCTTCTGGAAGCAAACCTGTAAAATCTCAAATGCT
261 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
19821815 CTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAGGTAC
326 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
19821880 CAGCACCCATCGCACATCATGTGCGCACACCCCTCCAACCCCCCCAATAGTCGGAACCCCAATGC
391 CAGCACCCATCGCACATCATGTGCGCACACCCC-CCAACCCCCCCGATAGTCGGAACCCCAATGC
19821945 CATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
455 CATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
* *
19822010 CACATGCCCTAGCCCAGCATGTGCTACCGTAACCTTCGATCCGGTCTGATCTTAGACTGGGAATG
520 CACATGCCCAAGCCCAGCATGTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATG
* ** * * *
19822075 AACTCCGTATGCTTAGACTAAGAATGAACTTTGTATGCTTAAGTCAACCCACGAAATGAGCGTGC
585 AACTCCATATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** * *
19822140 GGGCACTCAGCCGGCCAGAGGGGCGGGACGCGTAAGCCGGGGATCGACCGGGTCCCCGTCTACAT
649 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGT
* * *
19822205 GCTATCGATCCTGCTCTCACAACCCTAGGTCCGGTCCGATCTTAGACTATGAATGAACTCCGTAT
714 GCTATCGATCTTGTTCTCGCAACCCTAGGTCCGGTCCGATCTTAGACTATGAATGAACTCCGTAT
* * * *
19822270 GCCTAAGCCAACCGACGAAATGAGCGGGCGAGCGGACGGGCGGGCACTACGTCAGCCAGAGAGAC
779 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * *
19822335 GGGATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGTAGATCTTCATATTT
843 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
19822395 CTGCAG-GCCAATGCCATTTTTATGGCTTGCAAGTTCATACAATGGTCCCTTAAGCCTTCACGTG
1 CTGC-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * *
19822459 AAGTTTCATGGCTAGACAACTCGTTTTCTATCTTTCACCATTTTTGAAACTTTTTACGGTTTGGG
65 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGG
* * * * *
19822524 ATTTTTTAAAATTTTTTC-GAAAGGCGTTTTGGCCCCGAACTTGGTAGATC-AGATCCCTGTATT
130 ATTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATT
* * * * * *
19822587 TTTTTTGGCATGCAAAAAAAAATTCAGCCAAAAATTCGAACTGTGCAAGATTTTGTGACCATTTG
194 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
19822652 AAAAAAATGTCCCCATTTCAAACACTTTAATGGCTTCTGGTAGCAAACCTGTAAAATCTCAAATG
259 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATG
19822717 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
324 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * ** *
19822782 A-CAGCACCCATGGCACATCATGTGCGAACACCCCCCCGGCCCCCTCGATCA-TCGGAACCCCAA
389 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAACCCCCCCGAT-AGTCGGAACCCCAA
** ** *
19822845 TGCCATCGGTCAGGTTC-TCTGGTGATGCTCCTACGATGGTGCCCCGGTGAAGAAAAAAGTGGCA
452 TGCCATCGGTCAGGTTCTTC-GGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * * * * * *
19822909 CCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGG
516 CCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGG
* * *
19822974 AATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCATGGAACGAGC
581 AATGAACTCCATATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
19823039 GTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCAGGTCCCCCTCT
645 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * ** * * ** * * *
19823104 ACGTGCTACCGATCCTCCTATGGTGACCCTTGATCCGGTCCGATCTTAGACCATGAATGAACTCC
710 ACGTGCTATCGATCTTGTTCTCGCAACCCTAGGTCCGGTCCGATCTTAGACTATGAATGAACTCC
* * * * *
19823169 ATATGCCTAAGCCAATCGATGAAATGA----GC--G-GGCGGGCGGGCACTACACCGGCCAGAGA
775 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGA
* **
19823227 GACGTGATGCGCAAGCCGCAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
840 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
19823290 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
1 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * ** * * *
19823355 AGTTT-ATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAATTTTTTGAGGTTCGTGA
66 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
* * * * * *
19823419 TTTTTTAAAATTTTTTC-GGAAGGATTTTTTGCCCCAAACTTGGGAGACATGATCCTTGTATTTT
131 TTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
19823483 TGTTGGTATGCACAAACAAATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGACCATTTGAA
196 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * * * *
19823548 AAAAGTGTCCCCATTTCAAACAATTTAACGACTACTGGCAGCAAACCCGTAAAATCTCAAATGCT
261 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
19823613 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGAGGGCCAATATAAGGGCCAAGTAC
326 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
19823678 CAGCACCCATCGCACATCATGTGCGCACACCTCCCCGACCCCCCCGATCA-TCGAAACCCCAATG
391 CAGCACCCATCGCACATCATGTGCGCACACC-CCCCAACCCCCCCGAT-AGTCGGAACCCCAATG
* ** * * * ** ** *
19823742 TCGCCGATCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCTGTTGAAGAAAAATACGACACCA
454 CCATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
* * * * * * *
19823807 GCACATGCCCAAGCCCAGCATGTGCTATCGCAACCCTC-AGTGCAGTTTGATCTTAGACTAGCAA
519 GCACATGCCCAAGCCCAGCATGTGCTACCGCAACCTTCGA-TCCGGTCTGATCTTAGACTGGGAA
* * * * **
19823871 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTACGTGAACCCACGAAACGAGATT
583 TGAACTCCATATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** * * * * *
19823936 ACGGGTGCTTAGCCGACCAGAGGGGCGGGATGCGCAAGTTGAGGATTGGTTGGGTCCCCTTCTGC
647 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
** * * * *** ** **
19824001 GTGCTGGCGATCCTTCTAC-CGTAA-CCTCA-GTTTTGTCTAATCTTAGACTGGGAATGAACTCC
712 GTGCTATCGAT-CTTGTTCTCGCAACCCT-AGGTCCGGTCCGATCTTAGACTATGAATGAACTCC
* * * * *
19824063 GTATGCCTAAGCCGATCGACGAAACGAGCAGGCGGGCAGGCGGGCGGGCACTACGTCGGCCATAG
775 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAG
* * ** *
19824128 AGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAAGTGAATTTAAGCACATCTTCATATTT
839 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
19824192 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGA
1 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
19824257 AGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTTGACACTTTTT
66 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
19824311 GCGGTTCAGG
Statistics
Matches: 3302, Mismatches: 385, Indels: 72
0.88 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 327 0.10
895 423 0.13
896 8 0.00
897 1 0.00
898 2 0.00
899 2 0.00
900 1 0.00
902 157 0.05
903 1230 0.37
904 1139 0.34
905 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA
TTTTTTAAAATTTTTTCTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCAACCCCCCCGATAGTCGGAACCCCAATGCC
ATCGGTCAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
ACATGCCCAAGCCCAGCATGTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
TATCGATCTTGTTCTCGCAACCCTAGGTCCGGTCCGATCTTAGACTATGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
Found at i:19822089 original size:26 final size:26
Alignment explanation
Indices: 19822060--19822115 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
19822050 CCGGTCTGAT
**
19822060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
19822086 CTTAGACTAAGAATGAACTTTGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
19822112 CTTA
1 CTTA
19822116 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:19823898 original size:26 final size:26
Alignment explanation
Indices: 19823858--19823910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19823848 GCAGTTTGAT
*
19823858 CTTAGACTAGCAATGAACTTCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
* *
19823884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
19823910 C
1 C
19823911 CTACGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCGTATG
Found at i:19824359 original size:26 final size:26
Alignment explanation
Indices: 19824323--19824375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19824313 GGTTCAGGAT
19824323 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19824349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19824375 C
1 C
19824376 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19825240 original size:26 final size:26
Alignment explanation
Indices: 19825211--19825263 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19825201 CCGGTCCAAT
*
19825211 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCATATG
**
19825237 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAAAATGAACTCCATATG
19825263 C
1 C
19825264 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCATATG
Found at i:19826149 original size:26 final size:26
Alignment explanation
Indices: 19826113--19826165 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19826103 CTGGTCTGAT
19826113 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19826139 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19826165 C
1 C
19826166 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19826304 original size:902 final size:896
Alignment explanation
Indices: 19824320--19828837 Score: 6158
Period size: 903 Copynumber: 5.0 Consensus size: 896
19824310 TGCGGTTCAG
*
19824320 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
19824385 CCCACGAAACAAGCATGCGGGCGCTCAGCTGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * ** * * * **
19824450 CCAGGTACCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTTGGTCCGATCAAATCTTAGAC
130 CCTGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCTCAACCCTTGGTCCGGTCTGATCTTAGAC
19824515 TGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAAC--G-A---------GCGGGCACTACG
195 TGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCAGGCGGGCGGGCGGGCACTACG
* * * ** * *
19824568 CCGGCCTGAGAGACAGGATGCACAAGCTATGGATAGATAGGGTGGTAGTTGGGTTTAGGCACATC
260 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
19824633 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATCCATACATTGGTCCCTTAAGCC
325 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
19824698 TTCACGTGAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT
390 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGT
* * * * *
19824763 GGTTCGAGATTTTTTAAGATTTTTTCGAAAGGATTTTTGGTCCCAACCTTGGTATACGTGATCCT
454 GGTTCG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
19824828 TGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
518 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
19824893 CATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATCT
583 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
19824958 CAAATTCTCTTTAAGGGGGTGTGAGTTTTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGG
648 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
19825023 CCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCACACGG-CCCCTCGATCGCCGGAA
713 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C-CGGCCCCCCCGATCGCCGGAA
* * * * *
19825087 CCCTAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATG
776 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
*
19825152 CGGCACCAGCACATGCCCGAGCCCAGCATGTGATGCCGCAACCCTCGGTCCGGTCC
841 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* ** * *
19825208 AATCTTAGACTGAAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
19825273 CCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * * * * * ** **
19825338 CC-GTGTACCCCTCTGTGTGCTGCCAATCCTGCT-ACTGTAACCCTCAGTCCGGTCAAATCTTAG
130 CCTG-GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCT-CAACCCTTGGTCCGGTCTGATCTTAG
* *
19825401 ACTGCGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGGGCAGGCGGCGGGCGGGCA
193 ACTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCAGGC--G-GGCGGGCGGGCA
* *
19825466 CTACTCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
255 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19825531 ACATCTTCATATTGCTCCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTT
320 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
19825596 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTGAAACTTT
385 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTT
* * *
19825661 TTGTGGTTCAGGATTTTTTTAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTTAGTAGACGTGA
450 TTGTGGTTC-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
19825726 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAAGATTTT
514 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-CAAGATTTT
* *
19825791 GTGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAA
578 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
19825856 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
643 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
19825921 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCG
708 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
* * *
19825986 GAACCCCAATGCCACCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
773 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * ** * ** * * *
19826051 ATGTGGCACTAGCACATGTGCTAGCCCAGCATGTGCTGCCTTAACCATCGGTCTGGTCT
838 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* *
19826110 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
19826175 CCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGC
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGC
* * * ** *
19826240 CTGGTTCCCCCTCTGCATGTTGTAGATCCTGCTGCCTCAACCCTCCGTCCGGTCTGACCTTAGAC
131 CTGG-TCCCCCTCTGCGTGCTGTCGATCCTGCTGCCTCAACCCTTGGTCCGGTCTGATCTTAGAC
* * * * * *
19826305 TGGGAATGAACTCTGTATGCCTAAGCCAACCAACGCAAGGATCAGGCGGGCGGGCGGGCGTGCGC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCAGGCGGGCGGGC--G-G-GCAC
* * * * * *
19826370 TACGTCGGCCAGAGAGACGGGATTCCCAAGCTGTGGATCGATAGGGTGGCAGGTGGGTTTAGGTA
256 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
19826435 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATCCATGCAATGGTCCCTTA
321 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
19826500 AGCCTTCCCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
386 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTT
* * * * **
19826565 TTGTAGTTCGGGATTTTTTAAAATTTTTGCGGAAGGCGTTTTGGCAGCAAACTTGGTAGACGTGA
450 TTGTGGTTC-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
19826630 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTG
514 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
19826695 TGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGCCTACT-GCTAGCAAACCTGTAA
579 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAA
* * *
19826759 AATCTCAAGTGCTCTTTAAAGGGGT-TGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
643 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
19826823 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCACCTCGGCCCCCCCGATCACC
708 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGCC
* **
19826888 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCTG-CGATGGTGCCCCGGTGAAGAA
772 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GACGATGGTGCCCCGACGAAGAA
* * * * * *
19826952 AAAAGCGGCACCAGCACATGACCGAGCCCAACATGTGCTGCCGCAACCCTCGGTTCAGTTC
836 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
*
19827013 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
19827078 CCCACGAAAGGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCG-
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGC
* * ** * * * * *
19827142 GTCGGGCCCCCTCCACGTGCTGTCGATCCTCCTG-CTGCAACCTTTGATCTGATCTGATCTTAGA
131 CT-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCT-CAACCCTTGGTCCGGTCTGATCTTAGA
** * ** * * *
19827206 CTATGAATGAACTCCGTATGCCTAAGCCACCCGACGAAACGAGCGGGCGAGAGGGCGGGCACTAC
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCAGGCGGGCGGGCGGGCACTAC
* *
19827271 GCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGAGTGGTAGGTGGGTTTAGGCACAT
259 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
19827336 CTTCATATTTCTACATGCCAATACCATTTTTATGGCTTTTAAATTCATATAATGGTCCCTTAAGC
324 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
19827401 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCATGATTTTCGAAAC-TTTTG
389 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTG
* * * * **
19827465 AGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGCAGACAAGATCC
453 TGGTTC-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
** *
19827530 TTGTATTTTTTTTGTTATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGA
517 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * * *
19827595 CCATTTGAAAAAAGTGTCCCCATTTCAAACAATTTAACGGCTACTGGCAGAAAACCCGTAAAATA
582 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
19827660 TCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGG
647 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
19827725 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAAC
712 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAAC
* * * * * * * *
19827790 CCTAATGCCGCCAGTCAGGTTCTTCGATGTTACTCCGACGATGGTGCCCTGGCGAAGAAAAATGC
777 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * * ** *
19827855 AGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCAATCCGGTTC
842 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
19827910 AATCTTAGACTCGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTACA-TCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCA
* * *
19827974 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA-AAGGGCGGGATGCGCAAGCCAGGGATCG
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-
* * * * * * *
19828038 GTCGGGTCCCCCTATACGTGTTGTCGATCCTTCTACCAT-AACCCTTGGTCCGGTCTGATCTTAG
129 GCCTGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC-TCAACCCTTGGTCCGGTCTGATCTTAG
** * * *
19828102 ACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGGCGAAACGAGCAAGCGGGTGGGCAGGCACT
193 ACTGGGAATGAACTCCGTATGCCTAAGCCAACT-AACGAAACGAGCAGGCGGGCGGGCGGGCACT
* * * *
19828166 ACGCCGGCCATAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGCAC
257 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
19828231 ATCTTCATATTTCTACGTGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
322 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
19828296 GTCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACCATTTTGAAACTTTTT
387 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTT
*
19828361 GCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
452 GTGGTTCG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
19828426 CTTGTATTTTTGTTT-GCATGCACAAAAACATTCAGCTAAAAGCTCGAAGTGTACAAGATTTCGT
516 CTTGTATTTTT-TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19828490 GACCATTTG-AAAAAGTGTCCCCA-TTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
580 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
19828553 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAAAATAA
645 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
19828618 GGGCCAAGTACTGGCACCCATCGCACATCATGTGCGTACACCACCCCCTGGCCCCCCCGATCGTC
710 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCCCGGCCCCCCCGATCGCC
* * **
19828683 AGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTTGACGAAGAAA
772 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * * * * **
19828748 AATGTGGCACCAGAACATGCCCGAGCCAAGTATATGCTACCGTAACCCTCAGTCTAGTCC
837 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
19828808 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
19828838 CTAAGCCAAC
Statistics
Matches: 3194, Mismatches: 387, Indels: 88
0.87 0.11 0.02
Matches are distributed among these distances:
887 2 0.00
888 206 0.06
890 1 0.00
895 127 0.04
896 44 0.01
897 808 0.25
898 407 0.13
899 9 0.00
900 2 0.00
901 10 0.00
902 608 0.19
903 847 0.27
904 123 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGC
CTGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCTCAACCCTTGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCAGGCGGGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTGTGG
TTCGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
Found at i:19827054 original size:26 final size:26
Alignment explanation
Indices: 19827016--19827068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19827006 TCAGTTCGAT
*
19827016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19827042 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19827068 C
1 C
19827069 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19827942 original size:26 final size:26
Alignment explanation
Indices: 19827913--19827964 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19827903 CCGGTTCAAT
19827913 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
*
19827939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
19827965 GCTACATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:19829525 original size:710 final size:711
Alignment explanation
Indices: 19828089--19829547 Score: 2158
Period size: 710 Copynumber: 2.0 Consensus size: 711
19828079 CCCTTGGTCC
* *
19828089 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGGCGAAACGAGCAAGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAA--GGG
* * *
19828154 TGGGCAGGCACTACGCCGGCCATAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGT
64 CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGT
* *
19828219 GAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCCTTTTTATGGCTTGTAAATTCATACA
129 GAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATTCATACA
* * *
19828284 ATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACCATT
194 ATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTCTATTTTTCACCATT
* * * *
19828349 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
259 TTGAAACTTTCTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACCTG
*
19828414 GTAGACGTGATCCTTGTATTTTTGTTTGCATGCACAAAAACATTCAGCTAAAAGCTCGAAGTGTA
324 GTAGACGTGATCCTTGTATTTTTGTTTGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTA
* *
19828479 CAAGATTTCGTGACCATTTGAAAAAGTGTCCCCATTGAGACACTTTAATGGCTACTGGCAGCAAA
389 CAAGATTTCGTGACCATTTGAAAAAGTGTACCCATTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
19828544 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGG
454 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATAAGGGATAAGGGG
** * * *
19828609 CCAAAATAAGGGCCAAGTACTGGCACCCATCGCACATCATGTGCGTACACCACCCCCTGGCCCCC
519 CCAAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCG-ACAACACCCCCCGGCCCCC
* ** * **
19828674 CCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTTG
583 CCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCAATGCTCCGACGATGGTGCCCCG
* * * *
19828739 ACGAAGAAAAATGTGGCACCAGAACATGCCCGAGCCAAGTATATGCTACCGTAACCCTCAGTCT
648 AAGAAGAAAAATGCGGCACCAGAACATGCCCGAGCCAAGCATATGCTACCGCAACCCTCAGTCT
* * *
19828803 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-A-GGCG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGGGCG
* * * *
19828866 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGA
** *
19828931 GTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGCTCGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAAT
* * *
19828996 GGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTTTATTTTTCACGATTTT
196 GGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTCTATTTTTCACCA-TTT
* * *
19829061 TGAAACTTTCTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACCTGG
260 TGAAACTTTCTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACCTGG
19829126 TAGACGTGATCCTTGTATTTTT-TTTGACATGCACAAAAA-ATTTCAGCTAAAAACTCGAAGTGT
325 TAGACGTGATCCTTGTATTTTTGTTTG-CATGCACAAAAACA-TTCAGCTAAAAACTCGAAGTGT
*
19829189 ACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACT-GCTAG
388 ACAAGATTTCGTGACCATTTG-AAAAAGTGTACCCA-TTCAGACACTTTAATGGCTACTGGC-AG
* *
19829253 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAA
450 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATAAGGGATAA
* * *
19829318 TGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACTTCATGTGC-A-AACACCCCCCGGCC
515 GGGGCCAAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGACAACACCCCCCGGCC
* * * *
19829381 CCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAAGTTCTCCGGCAATGCTTCGACGATGGTGCC
580 CCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCAATGCTCCGACGATGGTGCC
* * * * ***
19829446 CCGAAGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTTGCAACCCTCAGT
645 CCGAAGAAGAAAAATGCGGCACCAGAACATGCCCGAGCCAAGCATATGCTACCGCAACCCTCAGT
19829511 CT
710 CT
* *
19829513 GGTCTAATCTTAGACTGGGAATGAACTCTGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
19829548 TTAGACTGGG
Statistics
Matches: 667, Mismatches: 72, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
710 336 0.50
711 137 0.21
712 15 0.02
713 126 0.19
714 53 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGGGCG
GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGA
GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAAT
GGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTCTATTTTTCACCATTTT
GAAACTTTCTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACCTGGT
AGACGTGATCCTTGTATTTTTGTTTGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
AGATTTCGTGACCATTTGAAAAAGTGTACCCATTCAGACACTTTAATGGCTACTGGCAGCAAACC
TATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATAAGGGATAAGGGGCC
AAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGACAACACCCCCCGGCCCCCCCG
ATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGAAG
AAGAAAAATGCGGCACCAGAACATGCCCGAGCCAAGCATATGCTACCGCAACCCTCAGTCT
Found at i:19829550 original size:26 final size:26
Alignment explanation
Indices: 19829521--19829573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19829511 CTGGTCTAAT
*
19829521 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19829547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19829573 C
1 C
19829574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19830849 original size:886 final size:885
Alignment explanation
Indices: 19828784--19833186 Score: 5376
Period size: 902 Copynumber: 5.0 Consensus size: 885
19828774 CAAGTATATG
* **
19828784 CTACCGTAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCGTAAACCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
19828849 GATG-AA-A-CGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
66 GACGAAATAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** *
19828911 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
19828976 GGCTCGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
19829041 TTTTTATTTTTCACGATTTTTGAAACTTTCTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
* * * * *
19829106 AGTTTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGACATGCACAAAAAATTTCA
326 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
19829171 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
19829236 TTAATGGCTACT-GCTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTG
456 TTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** * *
19829300 AGGTTTGATGAGGGATAATGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACTTCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * * *
19829365 CAAACA-CCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAAGTTCTCCGGCAAT
585 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGCCGTCAGTTAGGTTCT----C--T
* * *
19829429 GCTTCGACGATGGTGCCCCGAAGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
644 G----G-CGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * *
19829494 CTGTTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
701 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
19829559 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGCTCAGCCGGCCAGA-GGG
766 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
19829623 CGGGATGCACAAGTCAAGAATCGACCAGGTCCCCCTTTGCATGTTGCCGATCCTA
831 CGGGATGCACAAGCCAGGGATCGACCAGGTCCCCCTTTGCGTGCTGTCGATCCTA
* * * * * * * *
19829678 CTGCTGTAACCCTTGAG-CGGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCGAAC
1 CTACCGTAAACC-TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
19829742 CGACGAAACAAGCGGGCGGGCAGGCGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAG
65 CGACGAAA-TAGCGGGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
19829807 CCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCAT
125 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
19829872 CTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
190 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
19829937 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTGTAAAATTTTTTC
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT
* * ** * * * * *
19830002 GGAAGGATTTTTATCCGTAAACTTGGTAGACATGATCGTTGTATTTTTTTTGGCATCCAAAAAAA
320 GAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAA
*
19830067 AAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
384 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
19830132 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGTGAG
449 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19830197 TTCTCGAGGATTGATTAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
514 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
19830262 CATGTGCGCACACCCCCCCGACCCCCCTGATCGTCGAAACCGCAACGCCATCAGTTAGGTTCTCT
579 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGCCGTCAGTTAGGTTCTCT
** * *
19830327 GGCGATGCTCCGACGAAGAAAAATGCGGCACCAGCACATGGTCGAGCCCAGCATGTGCTACCGTA
644 GGCGATGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
19830392 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTAGGAATGAACTC
709 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
19830457 CG-ATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
774 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
19830521 ATAAGTCAGGGATCGGCCGGGTCCCCCTTTGTGTGTTG-CTGATCCTG
839 ACAAGCCAGGGATCGACCAGGTCCCCCTTTGCGTGCTGTC-GATCCTA
* * ** * * *
19830568 TTGCCACAAACCTCAGTCCGGTCCAATGTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACC
1 CTACCGTAAACCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
19830633 GACGAAATGAGCGGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 GACGAAAT-AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
19830698 GATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
19830763 TGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
19830828 TTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
* * * * * *
19830893 GAGTTTTGTCCCTAAACTAGGTGGATGTGATTCTTGT-TTTTTTGTTGGCATGCACAAAACAATT
325 GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATT
* * *
19830957 CAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
19831022 CTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGATTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
19831087 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * *
19831152 ATGCACA-CCCCCCGGCCCTCCCAATCGCCGGAACCTCAATGCTGCCGGTCAGGTTCTCCGACGA
584 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA--C-GCC-GTCA-G-T-T---A-GG
* * * * * * *
19831216 TGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCTCATGCCTGAGCCCAACATGT
638 TTCTCTGGCGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
19831281 GCTACTGAAAACATCTGTCCGGTCTGATC-T----T----A-G------G--T-C---GA----G
700 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
**
19831320 AATGAACTCCGTATGCCTAAGTCAACCTGCGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
765 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** * * * *
19831385 GTGAGATGTGCAAGCCGGGGATCGGCCGGGT-CCCCTTCTGTGTGCTGTCGATCCTA
830 GCGGGATGCACAAGCCAGGGATCGACCAGGTCCCCCTT-TGCGTGCTGTCGATCCTA
** * * *
19831441 CTACCGT-AACCTTC-GATCCAATCTGACCTCAGACTGGGAATGAACTCC-TATGCCTAAGCCAA
1 CTACCGTAAACC-TCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19831503 CCGATGAAAT-------GAGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATTCGCAAGCCGT
64 CCGACGAAATAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
19831561 GGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATTCCAGTGCCATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
19831626 ATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** *
19831691 GTTTTCTATATTTTTATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTT--C
259 GTTTTCTAT-TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAA
* * * * *
19831753 AGGAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATAT
323 AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
19831818 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
19831883 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAA-GGGGTATGAGTTC
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTC
* * * * *
19831947 TCGAGGTTTAATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAACCATCGCACATCAA
517 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * ** * * *
19832012 GTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCT-TCGA
582 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGCCGTCAGTTAGGTTCTCT-GG
** * *
19832076 CGATGCTCCAGTGATGGTGCCCAGGTGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAACA
646 CGATGCTCC---GA-------C----GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
19832141 TGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
697 TGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
19832206 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCACCCGGCCAGA
762 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * *
19832271 -GGGCGGGATGCGCAAGCCGGGGATCGACCAAGTCCCCCTCTGCGTGCTGTCGATCCTA
827 GGGGCGGGATGCACAAGCCAGGGATCGACCAGGTCCCCCTTTGCGTGCTGTCGATCCTA
* * * *
19832329 CTACTGTAACCCTCAATCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCGTAAACCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** *
19832394 GACG--ATA-CGAGCGGGCGGGCGGGCATTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGT
66 GACGAAATAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
19832456 ATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
19832520 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCCT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
19832585 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGAAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
*
19832650 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCA
326 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * *
19832715 GCTAAAAACTCGAAGTGTACAAGTTTTTTTGACCATTTGACAAAAGTGTCCCAATTTCAGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
19832780 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGTGAGTTCT
456 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG-G-GTGTGAGTTCT
* * *
19832845 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATA
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
19832910 TGCGCACACCCCCCCGGCCCCTCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTG
583 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA---CG-CCGTCA-G---TTAGGT-
* * * *
19832975 AGGCTCTGGCGATGGTGCCCTGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
639 --TCTCTGGCGATGCT--CC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
*
19833040 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
699 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * * *
19833105 GAATGAACTCTATATGCCTAAGTCAACCCATGAGATGATCGTGCGGGCGCTTAGCCGGCCAGAGG
764 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
19833170 GGCGGGATGCGCAAGCC
829 GGCGGGATGCACAAGCC
19833187 GAGGATTGTG
Statistics
Matches: 3024, Mismatches: 372, Indels: 222
0.84 0.10 0.06
Matches are distributed among these distances:
849 5 0.00
851 1 0.00
852 9 0.00
853 1 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 3 0.00
862 233 0.08
863 93 0.03
864 183 0.06
865 39 0.01
868 1 0.00
872 46 0.02
873 117 0.04
874 1 0.00
876 2 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
884 25 0.01
885 204 0.07
886 258 0.09
887 7 0.00
888 83 0.03
889 136 0.04
890 227 0.08
891 38 0.01
892 98 0.03
893 85 0.03
894 225 0.07
895 18 0.01
896 1 0.00
897 259 0.09
898 92 0.03
900 3 0.00
901 5 0.00
902 263 0.09
903 192 0.06
904 43 0.01
905 4 0.00
908 12 0.00
909 1 0.00
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CTACCGTAAACCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAATAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGCCGTCAGTTAGGTTCTCTGGCGATG
CTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
AGGGATCGACCAGGTCCCCCTTTGCGTGCTGTCGATCCTA
Found at i:19832208 original size:26 final size:26
Alignment explanation
Indices: 19832172--19832224 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19832162 CCAGTCCGAT
*
19832172 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19832198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19832224 C
1 C
19832225 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19833046 original size:897 final size:895
Alignment explanation
Indices: 19828784--19833192 Score: 5757
Period size: 897 Copynumber: 5.0 Consensus size: 895
19828774 CAAGTATATG
* **
19828784 CTACCGTAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
19828849 GATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
66 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
** *
19828914 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
19828979 TCGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
19829044 TTATTTTTCACGATTTTTGAAACTTTCTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
261 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGT
* * * * *
19829109 TTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGACATGCACAAAAAATTTCAGCT
326 TTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
*
19829174 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTA
391 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
19829239 ATGGCTACT-GCTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGG
456 ATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
** * * **
19829303 TTTGATGAGGGATAATGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACTTCATGTGCAA
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
19829368 ACA-CCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAAGTTCTCCGGCAATGCT
585 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCT
* * *
19829432 -TCGACGATGGTGCCCCGAAGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
650 CT-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * ** **
19829496 GTTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
714 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
*
19829561 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGCGG
779 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGG
* * ** * * * * *
19829626 GATGCACAAGTCAAGAATCGACCAGGTCCCCCTTTGCATGTTGCCGATCCTA
844 GATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTA
* * ** * * * * *
19829678 CTGCTGTAACCCTTGAGCGGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCGAACC
1 CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
19829743 GACGAAACAAGCGGGCGGGCAGGCGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGC
66 GACG--A-AA-CGAGCGGGC--G-GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
19829808 CGTGGATTGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATC
123 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19829873 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
188 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19829938 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTGTAAAATTTTTTCG
253 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG
* * ** * * * * *
19830003 GAAGGATTTTTATCCGTAAACTTGGTAGACATGATCGTTGTATTTTTTTTGGCATCCAAAAAAAA
318 AAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAA
*
19830068 AATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
382 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19830133 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGTGAGT
447 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
19830198 TCTCGAGGATTGATTAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
512 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
19830263 ATGTGCGCACACCCCCCCGACCCCCCTGATCGTCGAAACCGCAA---CGCC-ATCA-G---TT-A
577 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * **
19830319 G-G-TTCTCTGGCGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGGTCGAGCCCAGC
642 GCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** ** *
19830379 ATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGAC
707 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * *
19830444 TAGGAATGAACTCCG-ATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGCTGGCCAG
772 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * * * * * *
19830508 AGGGGCGGGATGCATAAGTCAGGGATCGGCCGGGTCCCCCTTTGTGTGTTG-CTGATCCTG
837 A-GGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTC-GATCCTA
* * ** * * * * *
19830568 TTGCCACAAACCTCAGTCCGGTCCAATGTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACC
1 CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
19830633 GACGAAATGAGCGGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 GACGAAACGAGC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
19830698 GATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTTTA
127 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
19830763 TGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
192 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
19830828 TTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAG
257 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
* * * * * *
19830893 GAGTTTTGTCCCTAAACTAGGTGGATGTGATTCTTGT-TTTTTTGTTGGCATGCACAAAACAATT
322 GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATT
* * *
19830957 CAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACA
386 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
19831022 CTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGATTTCTC
451 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
19831087 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCGCACATCATGT
516 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * * * * *
19831152 ATGCACA-CCCCCCGGCCCTCCCAATCGCCGGAACCTCAATGCTGCCGGTCAGGTTCTCCGACGA
581 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGA
* * * * *
19831216 TGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCTCATGCCTGAGCCCAACATGT
646 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * * *
19831281 GCTACTGAAAACATC--T---GTCCG------G--T----CTG-A-TCT-TA-G----GTC-GAG
711 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
**
19831320 AATGAACTCCGTATGCCTAAGTCAACCTGCGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
776 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * *
19831385 -GTGAGATGTGCAAGCCGGGGATCGGCCGGGTCCCCTTCTGTGTGCTGTCGATCCTA
841 CG-G-GATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTA
* * ** * * *
19831441 CTACCGTAACCTTCGATCCAATCTGACCTCAGACTGGGAATGAACTCC-TATGCCTAAGCCAACC
1 CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
19831505 GATGAAATGA----GCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATTCGCAAGCCGTGGATC
66 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
19831566 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATTCCAGTGCCATTTTTATGGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
19831631 TTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
19831696 CTATATTTTTATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTT--CAGGAG
261 CTAT-TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAG
* * * * *
19831758 TTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGC
325 TTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
*
19831823 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
19831888 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAA-GGGGTATGAGTTCTCGAG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAG
* * * * *
19831952 GTTTAATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAACCATCGCACATCAAGTGCG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * *
19832017 CACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGC
584 CACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGC
** * * ** ** * *
19832082 TCCAGTGATGGTGCCCAGGTGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAACATGTGCT
649 TCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
19832147 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
714 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * *
19832212 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCACCCGGCCAGAGGGCGG
779 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGG
*
19832277 GATGCGCAAGCCGGGGATCGACCAAGTCCCCCTCTGCGTGCTGTCGATCCTA
844 GATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTA
* *
19832329 CTACTGTAACCCTCAATCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** *
19832394 GACGATACGAGCGGGCGGGCGGGCATTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATC
66 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
19832459 GATAGGGTGATAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCCATTTTTATGGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
19832523 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCCTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * * *
19832588 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGAAAGGAGT
261 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGT
*
19832653 TTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCT
326 TTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * *
19832718 AAAAACTCGAAGTGTACAAGTTTTTTTGACCATTTGACAAAAGTGTCCCAATTTCAGACACTTTA
391 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
19832783 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGTGAGTTCTTGA
456 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG-G-GTGTGAGTTCTCGA
* *
19832848 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATATGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
19832913 GCACACCCCCCCGGCCCCTCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGAGG
583 GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATG
* * *
19832978 CTCTGGCGATGGTGCCCTGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
648 CTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
19833043 TGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
713 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
** * * * *
19833108 TGAACTCTATATGCCTAAGTCAACCCATGAGATGATCGTGCGGGCGCTTAGCCGGCCAGAGGGGC
778 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGC
*
19833173 GGGATGCGCAAGCCGAGGAT
842 GGGATGCGCAAGCCGGGGAT
19833193 TGTGCGGGCG
Statistics
Matches: 3048, Mismatches: 386, Indels: 158
0.85 0.11 0.04
Matches are distributed among these distances:
862 233 0.08
863 122 0.04
864 182 0.06
865 40 0.01
868 5 0.00
871 1 0.00
872 40 0.01
873 121 0.04
874 2 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 3 0.00
881 3 0.00
882 3 0.00
883 2 0.00
884 26 0.01
885 203 0.07
886 260 0.09
887 8 0.00
888 93 0.03
889 133 0.04
890 218 0.07
891 37 0.01
892 99 0.03
893 92 0.03
894 226 0.07
895 13 0.00
896 4 0.00
897 296 0.10
898 84 0.03
899 1 0.00
900 4 0.00
901 5 0.00
902 262 0.09
903 192 0.06
904 30 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGT
TTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTC
TGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGA
TGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCCTA
Found at i:19833120 original size:26 final size:26
Alignment explanation
Indices: 19833069--19833121 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19833059 CCAGTCTGAT
*
19833069 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19833095 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
19833121 C
1 C
19833122 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19834493 original size:26 final size:26
Alignment explanation
Indices: 19834457--19834509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19834447 CCGGTCCTAT
*
19834457 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19834483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19834509 C
1 C
19834510 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19835400 original size:26 final size:26
Alignment explanation
Indices: 19835371--19835426 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19835361 CCGGTCCGAT
* *
19835371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19835397 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
19835423 CTTA
1 CTTA
19835427 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19836325 original size:26 final size:26
Alignment explanation
Indices: 19836274--19836326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19836264 CTGATCCAAT
*
19836274 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
19836300 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
19836326 C
1 C
19836327 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:19836707 original size:903 final size:903
Alignment explanation
Indices: 19833591--19846087 Score: 15240
Period size: 892 Copynumber: 14.0 Consensus size: 903
19833581 CCGGTCCGAT
** * * *
19833591 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACTGACGAAACGAGCGTGCGGGTGTTCAA
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
19833655 CCGGCCAGAGGGGTGGGATGCGTAAGTCGGGGATTGGCTGGGTCCCCCTCTGCGTGCTGTCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATC
* * *
19833720 CTGCTG-TCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCC
130 CTGCTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * ** **
19833784 AACCGACGAAATGAGCGAACGGGTGGACGGACGGGCACTACGCAAGCTTGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * **
19833849 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGAACATCTTCATATTTCTGCATGGTAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
19833914 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19833979 ACGACT-TTGTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAA-TT
389 ACGACTCGT-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * ** * * * * *
19834042 TCTCTGGAAAGAGTTTTGAACCCAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCAAGCAT
453 TTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
19834107 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTCAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
19834172 TTTCAGACACTTTAATTGCCACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
19834237 TGAGTTCTCGAGGTTTGATGAGGGAT-AGCGGACCATTATAAGGGCCAAGTACCAGCACCCATCG
647 TGAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** *
19834301 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTT
711 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* ** ** *
19834366 CTCC---G--G-T-----GATGGTACCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGC
776 CTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** * * *
19834420 CCAGCTTGTGCTGCCGCAA-CCTCTAATCCGGTCCTATCTTAGACTGGGAATGAACTTCGTATG
841 CCAGCATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19834483 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACACACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *** * * ** * *
19834548 CGGCCAGAGTGGCAGGATTCACAAGTCGGGGATCGACCCTGTCCCACTCTACACGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * ** * * *
19834613 TACT-ATCACAACCTTCAATCCTATCCGATCTTGGAATGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
19834677 ACCGACGAAACGAGCGAGCAGACAGGCGGGCGGGCACTACACCGACCAGAGAGACAGGATGTGCA
195 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
19834742 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19834807 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19834872 CGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * ** *
19834937 TTGGAAAGAGTTTTGGCATCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
19835002 AAAATTCAGCTAAAAAC-CTTAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATT
520 AAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
19835066 CCGGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTT
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
19835131 AGTTCTCAAGATTTGGTGAGGGATAATGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
19835196 ATCACGGGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCAGTTAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
19835261 CGATGATGCTCCGACGATGCTCCGCCGGTGGTGCCCCGGCGAAGAAAAATGCGGCACAAGCACAT
779 C---G--G-T-----GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * ** * *
19835326 GCCCTAGCCCAGCATGGGCTATCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
833 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
19835391 CGTATG
898 CGTATG
* ** * * * *
19835397 CTTAGACTAGGAATGAACTCCATATGCTTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** ** * *
19835462 CGGTGAGAGGGGCGTGATGCGCAAGCCGGGGATCAACCAGGTCCCCATCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
19835527 TGCTGCTCCAACCCTC-GATCCGGTCTGATCTTAGAATGGGAATGAACTCAGTGTGCCTGAGCCA
131 TGCTGCTGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** * *
19835591 ACCGACGAAACGAGTGGGAGGACGGGTGGATGGGCACTACGCCGACCCGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
19835656 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19835721 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** ** * *
19835786 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTTGTGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
19835851 TCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
19835916 AAAATTCAGCGAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19835981 CGGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19836046 GTTCTC-ATGATTTGGTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
650 GTTCTCGA-GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
19836110 ATCACGCGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCACAATGCCGTCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** *
19836175 CGGTGATGCTCCGGCGATGGTGCCTTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
779 CGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
19836240 GTATGTGCTGCCGTAACCCTCGGTCTGATCCAATCTTAGACTGGCAATGAACTCCGTATG
844 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
19836300 CTTAGACTGGGAATGAACTCTATATGCCTAAGTAAACTGACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
19836365 CGGCCAGAGGGGCGGGATGGGCAAGCCGGGGATCGGCTGGGTGCCCCTCTATGTGCTACCAAT-C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
19836429 TGACTACTGCAGCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
131 TG-CTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19836494 ACCGACGAAACGAGTGAGCTGACGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *** **
19836559 GGCCATGGATCGATAGGGTGGTATGTGGGTTTATTTACATCTTCATATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19836624 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGCTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** ****
19836689 CGACTCGTTTTATATTTTTTACGATTTTCAAAACTTTTTACGGTTCAATTTTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * **
19836754 TTGGAAGGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTAGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
19836819 AAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19836884 CAGACAATTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19836949 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
19837014 TCATGTGCGCACACCTACCCGGCCCCCCCGATCGACGGAACCCCAATACCGTCGGTCAGGTTCTC
715 TCATGTGCGCACACC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * * *
19837079 TAGCGATGCTCCGGCGATGGTGCCCAGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
779 CGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
19837144 GCATGTGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
844 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
19837204 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19837269 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACTGGGTCACCCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * **
19837334 TGTTGCCGCCACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
19837399 CTGACGAAAC-A---A---G-CGGGCGGGTGGGCACTATGCCGGCCAAAGAGACGAGACGTGCAA
196 CCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
19837456 GTCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTCCATATTTATACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
19837521 TTTTTATGGCTTGTCAAA-TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGA
326 TTTTTATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19837585 CGACTCGTTTTCTATTTCTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * ** * *
19837650 TCGAAAGGATTTTTTGCAACAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
19837715 AAAATTCAGCTAAAAACTCGAAGCGTACAATATTTTGTGACTATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
19837780 AAGACACTTTAATGGCTACTGGTAGGAAAACTGTAAAATCTCAAATGCTCTTAAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
19837845 GTTCTCGAGGTTTGATGAGGGAT-AGGGAGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCAC
650 GTTCTCGAGGTTTGATGAGGGATAAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
19837909 ATCATGTGAGCACACCCACCAGTCCCCCCGATCGTCGGAACCCCAACGTCGCCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
19837974 CGGCGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
779 CGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * * * * * *
19838039 GGTTTTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATG
844 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19838099 GTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **** ** * *
19838164 CGGCCAGAGGGGCGAGATGCGCAAGTTAAGGATCGG-TCGGGTCCCTTTCTGTGTGTTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
19838228 TTGCTG-TCACAACCCTCGGTTCGGTC-CATTCTTAGACTGGGAATGAACTCCATATGCCTAAGC
130 CTGCTGCT-GCAACCCTCAGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
19838291 CAACTGACGAAACGAGCGGGCGGGCGGGCGGG-GGGCACTACGCTGGCCAGAGAGACGGGATGCG
193 CAACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
19838355 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * *
19838420 CCATTTTTATGGCTTGTAAATTCATAAAATGGTCACTTAAGCCTTCACATGAAGTTCCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
19838485 GACGATTGGTTTTCTATTTGTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTT
388 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
19838550 TTTCGGAAGGAGTTTT-GCCCCAAACTTGTTAGACATGATCCTTCTATTTTTGTTGGCATCCACA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
19838614 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
19838679 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAA-GGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
19838743 AAGTTCTCAAGGTTTGATGAGGGAT-AGGGGACCAATATAAGGGCCAAGTACCGGCACCCATCGC
648 GAGTTCTCGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
19838807 ACATCATGTGCGCACACCCCCC-GACCCCCAGATCATCGGAACCCTAAT---GCC-ATC--G--A
712 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
19838863 TCAGGT--T-CTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
777 TCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
19838925 CAGTATTTGCTGCCACAACCCTCGGTCTGGTCCGA---T---CT-----T--A----G-A--
842 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19838967 C-T--A---GGAATGAACTCCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGAGCGCCCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
19839026 CAGCCAGAAGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATC
** * * *
19839090 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19839155 ACCGATGAAAAGAGCGGGCGGGCGGGCAGGCAGGCGGGTGAACACTACGTCGGCCAGAGAGACGG
195 ACCGACGAAACGAGCGAGCGGACGGGC--G--GGC-GG-G--CACTACGCCGGCCAGAGAGACGG
* * *
19839220 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATGT-TGTAT
252 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCAT
* *
19839284 GCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTC
316 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * **
19839349 ATGCCAAGATGACTCGTTTTATATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
381 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * *
19839414 AAAATTTTTTCGGAAGCA-TTTTCGGCCCCAAACTTGGTAGACATAATCCTTGTATTTTTCTTGG
446 AAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
* *
19839478 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTT-TGACCATTTAAAAAAAGT
510 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
19839542 GTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
575 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
19839607 GGGGGTGTGAGTTCTTGAGGTTTGATGAGAGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
640 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
19839672 CCATCGCACATCATATGCGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGTCGTCGG
705 CCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
** *
19839737 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
769 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG
* * *
19839802 CCCGAGCCCAGCTTGTGCTGTCACAA-CCT---TC-GGT-C---C----A----G--T---CT--
834 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
19839843 G-AT-
899 GTATG
* * * * * **
19839846 CTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACTCACGAAACGAGTGTGTGGGCACTCAAT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19839911 CGGCTAGAGGGGCGGGATGCACAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * ** * *
19839976 TGCTGCTGTAACCCTCGGTCTGGTCTTATCTTAGACTTAGAATGAACTCCATATGCCTAAGCGAA
131 TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19840041 CCGACG-AA--A-CGAGCGGACGGGCGGGTGGGCACTACGCCGGCCAAAGAGACGGG-TCGCGCA
196 CCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT-GCGCA
19840101 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* ** * *
19840166 ATTTTTGTTTCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
19840231 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGAATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** ** * * *
19840296 TCGGAACGAGTTTTGTTCCCAAACTTATTGGACGTGATCATTGTATTTTTTTTTTGGCAGGCACA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACA
*
19840361 AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
19840426 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
19840491 GAGTTCTCGAGGTTTGATGAGGGAT-AGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
648 GAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
19840555 ACATCATGTGCGCACACCCTCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
712 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
19840619 TCCGGAGATGCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGTGGCACCAGCACATGCCCAAGCC
777 TCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
19840684 CAGCATGTGCTGCCGTAA--C-C---C----CCGA---T---C------TG-A-TCCG-AT-
842 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19840720 CTTAGACTGGGAATGAA-TACCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGTGTGCTCAG
1 CTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
19840784 TCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCTGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGAT
*** *** * * * * * *
19840848 CCCATTGCCATAACCCACGGTCTGGTCTAATCTAAGACTGGGAATGAACTTCGTATGCCTAAGCC
129 CCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** *
19840913 AACGGACGAAACGAGCGAGCGGGTGGGCGGGC--TC-CT-CGCCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
19840974 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
19841039 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * *
19841104 AAGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGGTCGGGATTTTTAAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
19841169 TT-GGAAGAAGTTTTGGCCCCAAACTTGGTGGACATGATCATTGTATTTTTTTTGGCACGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
19841233 AAAAATTGAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19841298 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
19841362 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAACACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
19841427 ATCATGTGCGCAAACCTCCCCCCGG-CCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTT
714 ATCATGTGCGC--A-CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
*** * * *** * * *
19841491 CTCCTACGATGCTCCGACGATGCTGCCCTTCCGAAGAAAAATGCGACACCAGCAAAT-CTCTGAG
776 CTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CCGAG
* * * *
19841555 CCCAACATGTTCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCAG-ATG
840 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC-GTATG
* * * * * *
19841619 CTTAGACTGGAAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG-GTTGGACGCTCGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAG
** * * * *
19841683 TTGGCCAGAGGGGCGGAATGCACAAGCCGGGGATTGGTCGGGGTCCCCCCTCTGCGTGCTACCGA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTGGGT-CCCCCTCTGCGTGCTACCGA
* * * **
19841748 TCTTTCTG-TCGTAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
128 TCCTGCTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
19841812 CCAACCGACGAAACGAGCGGGCAGG-CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
192 CCAACCGACGAAACGAGCGAGC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * ** * *
19841876 CGCAAGTCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTTGTATTTCTGCGTACCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
19841941 TACCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
19842006 AAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAAT
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-
* **
19842071 TTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTTGTATTTTTTTTGGTGTG
450 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTTTTGGCATG
* * *
19842136 AACAAAAAAATACAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
514 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
19842201 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
19842265 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCAT
644 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
19842330 TGCACATCATGTGCGTACACCTCCCCCCGG-CCCCCCGATCATTGGAACCCCAATGTCGCCGGTC
709 CGCACATCATGTGCG--CA-CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
*** * *** * * *
19842394 AGGTTCTCCGACAATGCTCCGACGATGGTGCCCTTCCGAAGAAAAATACGGCACCAGCAAATGTC
771 AGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCC
* * ** * *
19842459 TGAGCCCAGCATGTGGTAACGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGG
836 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
19842524 ATG
901 ATG
* * *
19842527 CTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * * *** * *
19842592 CGGCCAGAGTAGCAGGATGCATAAGTCGGGGATCGGCCGGGACCCCCTCTATTTTCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** *
19842657 TGCTACCGCAACCCTTGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** ** * ** * *
19842721 ACTGAC-TTA--A-CGAGCGGACGGGCAAGCGTGCACTATACCTGCCAGAGAGGCGGGATGCGCA
195 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
19842782 AGCTGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCT
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19842847 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
19842912 CGACTTGTTTTATATTTTTCATGATTTTTGAAATTTTTTGCGATTTGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
19842977 TCGGAAGGACTTTTGGCCCCAAACTTGGTGGACGTGATCATTTTATTTTTTTTGGTACGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
19843042 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*** * * *
19843107 CAGACACTTTAACATCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTAAGTGGGTGTCA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
19843172 GTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCATA
650 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
19843237 TCATGTGCGCACACCCCCCGGCCCCTCTGATTGTCGGAACCCCGATGCCGCCGGTCAGGTTCTCC
715 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** *
19843302 GGTGA--------C---GGTGCCCC-TCTGAAGAAAAATGCAACACCAGCACTTGCCCGAGCCCA
780 GGTGATGCTCCGGCGATGGTGCCCCGGC-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * **
19843355 GCATTTGCTACCGTAACCCTCGGTCTGGTCTTATCTTAGACTGGGAATGAACTCCGTATG
844 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19843415 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAATCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19843480 CAGCCAGAGGGGCGGGATTCGTAAGCCGGGGATCGACCGGGTCCCTCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * ** *
19843545 TGCTACCGTAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
131 TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
19843610 TCGATGAAGCGAGC-AGGCCGACGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCGTA
196 CCGACGAAACGAGCGA-GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
19843674 AGCCATGAATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTTATATTTCTGCATGCCAATGC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATGC
19843739 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19843804 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAGTTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
**
19843869 TT-GGAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCA-A
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACA
* * *
19843932 AAAAAATTTAGCTAAAAAATCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
19843997 TTAAGACACTTTAATAGCTACTGGCAACAAACCTGTAAATTCTCAAATGCTCTTTAAGGGAGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * **
19844062 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGTACCCATCATA
648 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19844127 CATCAGGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCTGTCAGGTTC
713 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
19844192 T-C---G--G----GG-GATGGTACCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCC
777 TCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
19844246 CAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
19844308 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACTAGCATGCGGCCACTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * *
19844373 TGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** *
19844438 TGCTGCCGTAACCCTCAGTTTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
19844502 ACCGACG-AA--A-TGAGCGG--GTG-GGG-GGGCACTAAACCGGCCAGAGAAACGGGATGCGCA
195 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
19844559 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCACATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
19844624 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACATGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
19844689 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCGTTCGAGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
19844754 TC---AGGAGTTTTGGCCCCAAACTTGGTAGGCATGAGCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
19844816 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19844881 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTTAAGGGAGTGTG
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
* * * *
19844946 AGTTCTC-AGGGTTTGATGAGAGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCAATCGCA
649 AGTTCTCGA-GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19845010 CATCATGTGTGCACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
713 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * * * * *
19845075 TCTGGCGATGCTACGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACACGCACTAGCC
777 TCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
19845140 CAGCATGTGCAGCCTTAACCATTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
19845202 CTTAGA-TCGGGAATGAACTTTGTATGCCTAAATCAACCCACGAAACGAGCGTACATGCGCTCAG
1 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
19845266 TCGGCCAGAGAGGCGGGATGCACAAGTCGGGGATCAGCTGGGTCCCCCCTCTGCGTGCTGCAGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGT-CCCCCTCTGCGTGCTACCGAT
* * *
19845331 CCTGCTGCCGTAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
19845396 AATCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGTGATGCGC
194 AACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
19845457 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
19845522 CATTTTGATGGCTTGTAAACTCATACAATGGTCCTTTAAGCCTTCACGTAAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
19845587 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
19845652 TTCGGAAGGATTTTTGGCCCCAAAATTGGTACACGTGATCCCTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
19845717 AAAAATTCAACTAAAAACTC-AACGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCAT
519 AAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
19845781 TTCAGACACTTTAATAGCTACCGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
19845846 TAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
19845911 CATCATGTGCGCACACCCCCTGACCCCCCCGATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCT
713 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
19845976 CC---GA--------CGATGGTGCCCCGGCGAAGAAAAATACAGCACCAGCACATGCCCGAGCCC
778 CCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
19846030 ACCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
843 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
19846088 GATCCTTGTA
Statistics
Matches: 10092, Mismatches: 1289, Indels: 451
0.85 0.11 0.04
Matches are distributed among these distances:
861 1 0.00
862 181 0.02
863 1 0.00
864 1 0.00
865 1 0.00
866 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
870 84 0.01
871 427 0.04
872 165 0.02
873 387 0.04
874 504 0.05
875 68 0.01
876 164 0.02
877 7 0.00
878 18 0.00
879 4 0.00
880 5 0.00
881 28 0.00
882 153 0.02
883 135 0.01
884 150 0.01
885 296 0.03
886 4 0.00
887 4 0.00
888 338 0.03
889 104 0.01
890 2 0.00
891 8 0.00
892 967 0.10
893 470 0.05
894 183 0.02
895 410 0.04
896 457 0.05
897 12 0.00
898 17 0.00
899 352 0.03
900 270 0.03
901 455 0.05
902 589 0.06
903 755 0.07
904 336 0.03
905 203 0.02
906 83 0.01
907 38 0.00
908 463 0.05
909 3 0.00
910 1 0.00
911 1 0.00
913 1 0.00
914 774 0.08
915 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19837207 original size:26 final size:26
Alignment explanation
Indices: 19837178--19837230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19837168 CTGGTCCGAT
19837178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19837204 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19837230 C
1 C
19837231 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19838103 original size:26 final size:26
Alignment explanation
Indices: 19838074--19838124 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19838064 CGATCTGATC
19838074 TTAGACAGGGAATGAACTCCGTATGG
1 TTAGACAGGGAATGAACTCCGTATGG
*
19838100 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACAGGGAATGAACTCCGTATG
19838125 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGG
Found at i:19843425 original size:26 final size:26
Alignment explanation
Indices: 19843389--19843441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19843379 CTGGTCTTAT
19843389 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19843415 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19843441 C
1 C
19843442 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19844318 original size:26 final size:26
Alignment explanation
Indices: 19844282--19844334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19844272 CTGGTCTGAT
*
19844282 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19844308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19844334 C
1 C
19844335 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19846516 original size:26 final size:26
Alignment explanation
Indices: 19846478--19846530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19846468 CAGGTCCGAT
*
19846478 CTTAGACTAGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19846504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19846530 C
1 C
19846531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19847870 original size:880 final size:882
Alignment explanation
Indices: 19846085--19847955 Score: 2430
Period size: 880 Copynumber: 2.1 Consensus size: 882
19846075 GAATGAACTC
*
19846085 CGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
1 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
* * * *
19846150 TTTTGTGAGCATTTTAAAAAAGTGTCCTCATTTCAGACAGTTGAATGGCTACTGGCAGCAAACCT
66 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACCT
* *
19846215 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGCTGAGGGATAGGGGGCCA
131 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** * *
19846280 ATATAAGGGCCAAGTTGCAACACCCATCACACATCATGTGCACACACCCCCTCGGCCCCCCCCGA
196 ATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCACACACCCCCGCGGCCCCCCCCAA
* * * ** * *
19846345 TCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTTTGGCAATGCTCTGGCGATGGTGCCCCGGGGA
261 TCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGAGGA
* ** * *
19846410 AGAAAAATGCGGTACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCAGGTCC
326 AGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCAGGTCC
* *
19846475 GATCTTAGACTAGGAATGAACTGCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
391 GATCTT--A-T---AATGAACT-CG--TG--T-GA---GGAATGAACTCCATATGCCAAAGTCAA
* ** *
19846540 CCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
441 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGA
* * * * ** *
19846605 CCAGGTCCCCCTCTGCATGCTACCGATCCTTCTACCGTAACCCTCGGTTCGGTCTGATCTTAGAC
506 CCAGGTCACCCTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAATCCGGTCTGATCTTAGAC
* * * * *
19846670 TAGGAATGCCTAAGCCAACCGACGAAATGAGCAGGCAGGCAGACGGGCGGGTGGGCACTACGTCG
571 TAGGAATGCCTAAGCCAACCAACGAAACGAGCAGGCAGG-AGACGGACGGGCGGGCACTACGCCG
* * * * *
19846735 GCCATAGAGATGGGATGCACAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
635 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19846800 ATATTACTGCATGCGAATGCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
700 ATATTACTGCATGCCAATGCCATCTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTC
* * * * * *
19846865 ATGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGT
765 ACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGT
*
19846930 TCGGGATTTTTGAAAATTTTTTCAGAAGGAAATTTGGAACCAAACTTGGTAGA
830 TCGAGATTTTTGAAAATTTTTTCAGAAGGAAATTTGGAACCAAACTTGGTAGA
* *
19846983 CGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
1 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
* * *
19847048 TTTTGTGACCATTTGAAAAAACTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCT
66 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACCT
19847113 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
131 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
19847178 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGCTGG-CCCCCCC
196 ATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCACACACC-CCCGC-GGCCCCCCCC
*
19847242 AATCG-CTAGAACCCCAATGCCGTCGATCAGGTTCTCCGGCAATGCTCCGTCGATGGTGCCCCGA
259 AATCGTC-AGAACCCCAATGCCGTCGATCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGA
* *
19847306 TGAAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
323 GGAAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCAGG
*
19847371 TCCGATC-T-T-A-G-ACT-G-G-GA-G-A-GAACTCCATATGCCAAAGTCAACTCACGAAACGA
388 TCCGATCTTATAATGAACTCGTGTGAGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGA
* * ***
19847425 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCAAGGATCGATTTGGTCACCCT
453 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCAGGTCACCCT
* ** * * *
19847490 TTGTGTGCTACTAATCCTGCTGCCGCAACCCTCAATCCGGTCTGATCTTAGA-TCGGGAATGAAC
518 CTGCATGCTACCAATCCTGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACT-AGGAATG---
* *
19847554 TCCATATACGTAAGCCAACCAATGAAACGAGCAGG-TGG-G-CGGACGGGCGGGCA-TCACGCCG
579 --C-----C-TAAGCCAACCAACGAAACGAGCAGGCAGGAGACGGACGGGCGGGCACT-ACGCCG
* * *
19847615 GCCAGAGAGACGGGATGCGCATGCCGTGGATCGACGGGGTGGTAGGTGGGTTTAGGCACATCTTC
635 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * * *
19847680 ATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGCGCAATGGTCCCTTAAGCCTTC
700 ATATTACTGCATGCCAATGCCATCTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTC
*
19847745 ACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGT
765 ACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGT
* * ** **
19847810 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
830 TCGAGATTTTTGAAAATTTTTTCAGAAGGAAATTTGGAACCAAACTTGGTAGA
** *
19847863 CGTGATCCTTGTATTTTTGTTTTCATGGA-AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
1 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
*
19847927 TTTTGTGACGATTTGAAAAAAGTGTCCCC
66 TTTTGTGACCATTTGAAAAAAGTGTCCCC
19847956 CTCTGCGTAC
Statistics
Matches: 855, Mismatches: 102, Indels: 51
0.85 0.10 0.05
Matches are distributed among these distances:
872 1 0.00
873 133 0.16
874 1 0.00
875 1 0.00
878 1 0.00
879 64 0.07
880 261 0.31
881 1 0.00
883 4 0.00
884 22 0.03
886 1 0.00
888 3 0.00
889 1 0.00
890 1 0.00
894 1 0.00
898 228 0.27
899 129 0.15
900 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCACACACCCCCGCGGCCCCCCCCAA
TCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGAGGA
AGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCAGGTCC
GATCTTATAATGAACTCGTGTGAGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCAGGTCACCCTCTG
CATGCTACCAATCCTGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGCCTAAGC
CAACCAACGAAACGAGCAGGCAGGAGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCACAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTGCATGCCA
ATGCCATCTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTGAAAA
TTTTTTCAGAAGGAAATTTGGAACCAAACTTGGTAGA
Found at i:19848385 original size:464 final size:465
Alignment explanation
Indices: 19847497--19848417 Score: 1318
Period size: 464 Copynumber: 2.0 Consensus size: 465
19847487 CCTTTGTGTG
*
19847497 CTACTAATCCTGCTGCCGCAACCCTCAATCCGGTCTGATCTTAGATCGGGAATGAACTCCATATA
1 CTACTAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGATCGGGAATGAACTCCATATA
* *
19847562 CGTAAGCCAACCAATGAAACGAGCAGGTGGGCGGACGGGCGGGCATCACGCCGGCCAGAGAGACG
66 CCTAAGCCAACCAATGAAACGAGC--G-GGGCGGACGGGCGGCCATCACGCCGGCCAGAGAGACG
* * * * *
19847627 GGATGCGCATGCCGTGGATCGACGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCAT
128 AGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* *
19847692 GCCAATGCCATTTTTATGGCTTGTAAATTCGCGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
193 GCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
19847757 ATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTT
258 ATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTT
* * * **
19847822 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTTC
323 AAAATTTTTTCAGAAGGAGTTCTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGC
* ** *
19847887 ATGGAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGT
388 ATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
19847952 CCCCCTCTGCGTA
453 CCCCCTCTGCGTA
* * * * *
19847965 CTACTGATCTTGCTGCCACAGCCCTCGATCCGGT-TCGATCTTAGA-CTGGGAATGAACTCCGTA
1 CTACTAATCCTGCTGCCACAACCCTCAATCCGGTCT-GATCTTAGATC-GGGAATGAACTCCATA
* * *
19848028 -AGCCTAAGCCAACCAATGAAACGAGC-GGGCGGGCGGGTGGCCA-CTACGTCGGCCAGAGAGAC
64 TA-CCTAAGCCAACCAATGAAACGAGCGGGGCGGACGGGCGGCCATC-ACGCCGGCCAGAGAGAC
**
19848090 GAGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
127 GAGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
* * *
19848155 TGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTT
192 TGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * ** **
19848220 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTT
257 CATGGCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGA-GATTTT
*
19848284 TTAAATTTTTTTCAGAAGGAGTTCTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTCT-TT
321 TTAAAATTTTTTCAGAAGGAGTTCTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTT-TGTT
*
19848348 GGGATGCACAAAAAAATTCAGCT-AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
385 GGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
19848412 TTGTCC
449 GTGTCC
19848418 TCATTTCAGA
Statistics
Matches: 404, Mismatches: 42, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
463 2 0.00
464 308 0.76
465 15 0.04
467 3 0.01
468 76 0.19
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (465 bp):
CTACTAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGATCGGGAATGAACTCCATATA
CCTAAGCCAACCAATGAAACGAGCGGGGCGGACGGGCGGCCATCACGCCGGCCAGAGAGACGAGA
TGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
AATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACAACTCCTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAA
ATTTTTTCAGAAGGAGTTCTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CCTCTGCGTA
Found at i:19848747 original size:26 final size:26
Alignment explanation
Indices: 19848718--19848770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19848708 CAGGTCCGAT
*
19848718 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
19848744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
19848770 C
1 C
19848771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19849634 original size:26 final size:26
Alignment explanation
Indices: 19849605--19849657 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19849595 CCAATCCGAT
19849605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19849631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19849657 C
1 C
19849658 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19855379 original size:893 final size:883
Alignment explanation
Indices: 19850507--19856255 Score: 6849
Period size: 881 Copynumber: 6.5 Consensus size: 883
19850497 GATCTTAGAA
**
19850507 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
** *** * * * * ** * *
19850572 AGGGGTAGGATGCATGAGTCGGGGATCGACCGGGTCCCCCACTGCGTGCTACCGATCCTACTGCC
66 AGGGGCGGGATGCGCAAG-CCGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* * * ** ** ** *
19850637 GCAACGCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCATATGAATAAGCCGACCGACGA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* *
19850702 AACGACCTGGCAGGTGGGCGGACGGGCACTACG-CAGGCC-GAGAGACGGGATGCTCAAGTCGTG
195 AACGA-----C-----GGCGG-CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * *
19850765 GATCGATAGTGTGGTAGGCGGGTTTAGACACATCTTTATATTTTTGCGTGCCAATGCCATTTTTA
248 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
19850830 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
313 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* ** *
19850895 TTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
378 TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* * ** * * *
19850960 GATTTTTGGGCCCAAACTTATTAGACGTAATGCTTGTATTTTTGTTGGCATGCACAAAAACATTC
443 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-
*
19851025 T-GCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
507 TAGCTAAAAACTCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
* * * * * * * * * *
19851088 ACTTTAATGGCTACTGGTAGCAAACCTATAGAATCCCAAACGCTTTTTAA-GGGGTGTGATTTGT
572 ACTTTAATAGCTACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
19851152 TGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACTAGCA-CCATCGCACATCATG
637 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
* * * * * * *
19851216 TGCGCACACCCCCCGGCCCCCCCGATCGA-TGGAACCCCAATGCCGTCAGTGAGGTTCTCCTGGA
702 TGCGAACACCCCCCCGACCCCCCGATC-ACCGGAACCCCAATGCCGCCGGTTAGGTTCTCC--GA
* * * * *
19851280 TGGTCCGACGATGGTGCCCCGATGAAGAAAAAATGTGGCACCAGCACATGCTCGAGCCTAGCATG
764 -----CGACTAT-GTGCCCCGGTGAAG-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
19851345 TGCTGCCGCAACCCTTGGTCCG----G----T---C------CG-A-TC----T--TA-GAT
822 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
* * * * * * *
19851381 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGCCGACTAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
*** * * * * *
19851446 AGGGATAGGATGCGCAAGCCGAAGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACC
66 AGGGGCGGGATGCGCAAGCCG-GGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* * * ** * *
19851511 GCAACCCTCGATTTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* * * *
19851576 AACGA-----GCGGG-----CG--AGCCAGAGAGACGGGATGCGTAAGTCGTGGATTGATAGGGT
195 AACGACGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
19851629 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
19851694 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
** * *
19851759 CATTATTTTCAAAACTTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
390 CACGATTTTCAAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
*
19851823 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAATAAATTTAGCTAAAAACT
454 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACT
* * *
19851888 C-GAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCT
519 CAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGCT
19851952 ACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
584 ACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
19852017 AGGGATAGGGGGCCAATATAAGGAG-CAAGTACCAGCACCCATCGCACATCATGTGCG--CACTC
649 AGGGATAGGGGGCCAATATAAGG-GCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCC
* * *
19852079 CCCCAACCCCCCGATCACAGGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGCTTCGACGA
713 CCCCGACCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGA--C-T-----A
* *
19852144 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTACTGTCGCAAC
770 T-GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
* *
19852209 CCTCGGTCC-AGTCCGATCTTAGACTGGGAACAAACTGTGTATGCTAGGAC
834 CCTCGGTCCGA-TCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
* * * * *
19852259 TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
* ** * * * * ** * ** * *
19852324 AGCGGCGGGATGCGTGAGACGGGGATAGACCGGGTCCCCTTCTGCATGCTATCGAT-CTATTGCT
66 AGGGGCGGGATGCGCAAG-CCGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* ** * * * *
19852388 GCAACCCTTTGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATACTTAAGCCGACTGACGA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG-
* *
19852453 AACGAGCAGACGGACGGGCGGGCACTACGTCGGCCTGAGAGACGGGATGCGCAACCCGTGGATCG
194 AA--A-C-GACGG-C-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** * *
19852518 ATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGTGTGCCAATACTATTTTTATGGCT
253 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
19852583 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
318 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* *
19852648 TATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
383 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
*** * * * * *
19852713 TTGGCTATAACCTTGGTAGACATGATTCTTGTATTTTTGCTGGCATGCAAAAAAAAATTT-GACT
448 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAG-CT
* *
19852777 AAAAACT-TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTAAGACACTTT
512 AAAAACTCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
*
19852841 AATAGCTACTGGCAGCCAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
577 AATAGCTACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
19852906 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
642 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGA
*
19852971 ACACCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGCGATGCT
707 ACACCCCCCCGA-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCT-C--CGA----
* * *
19853036 TCGACGATGTTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
764 -CGACTATG-TGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
19853101 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
827 TCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
* * * *
19853158 TGGGAATGAACTCCGTACGCCTTATTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
* * * ** *
19853223 AGGGGCAGGATGTGCAAGTCGGAGATCGATCGGGTCCCCCTCTGTGCACTGTTGATCCTGCTACC
66 AGGGGCGGGATGCGCAAGCCGG-GATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* *
19853288 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* **
19853353 AACGA-----GCGGG-----CG--GGCCAGAGAGACGGGATGCGTAAGTTGTGGATCGATAGGGT
195 AACGACGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
19853406 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
19853471 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * **
19853536 CACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCTA
390 CACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * * * * *
19853601 TAACCTTGGTAGACATGATTCTTGTATTTTTGCTGGCATGCAAAAAAAAATTT-GACTAAAAACT
455 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAG-CTAAAAACT
* *
19853665 -TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTAAGACACTTTAATAGCT
519 CAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGCT
*
19853729 ACTGGCAGCCAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
584 ACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
19853794 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCC
649 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCC
* *
19853859 CCCGACCCCCCCGATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCAGCGATGCTTCGACGA
714 CCCGA-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCT-C--CGA-----CGACTA
** *
19853924 TGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
770 TG-TGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
*
19853989 CCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
834 CCTCGGTCCGATCCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
* * * *
19854039 TGGGAATGAACTCCGTACGCCTTATTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
* * * ** * *
19854104 AGGGGCAGGATGTGCAAGTCGGAGATCGATCGGGTCCCCCTCTGTGCACTGTTGATCCTACTACC
66 AGGGGCGGGATGCGCAAGCCGG-GATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* *
19854169 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* * *
19854234 AACGA-----GCGGG-----CG--GGCCAGAGAGACGGGATGCGTAAGTCGTGGATTGATAGGGT
195 AACGACGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
19854287 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
19854352 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * *
19854417 CATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCC
390 CACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
*
19854482 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTC
455 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTC
* * *
19854547 AG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTT
520 AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGCTA
* * *
19854611 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
585 CTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* ** *
19854676 CGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCACACATCTTGTGCGAACACCCCC
650 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCC
* * * *
19854741 CCGGCCCCCTCGGATCACCGGAACTCCAATGTCGCCGGTCAGGTTCTCCGACGA-TA-GTGCCCC
715 CCGACCCCC-C-GATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGACTATGTGCCCC
* * * *
19854804 GGTGAAGAAAACTGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCT
778 GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
* * * * *
19854869 GATTCGATC-TAGACTGTGAATGAACTCCGTATGCTTA-GAT
843 GATCCGATCTTAGACTGGGAACGAACTCTGTATGC-TAGGAC
* **
19854909 TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
* *
19854974 AGGGGTGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
66 AGGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* * * * *
19855039 GCAACCCTTGGTCTAATCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACTGACA
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACG
19855103 AAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
194 AAAC--G-A--C-GGC-GGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* **
19855168 GATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTTTGCCAATGCCATTTTTA
248 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
19855233 TAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
313 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
** ** * *
19855298 TTTTCTATTTTTCATTATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
378 TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
*
19855363 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TTGGCATGCACAAAAACATT
443 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATT
* *
19855427 CAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTAAGAC
507 TAGCTAAAAACTCAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
* * * * * *
19855491 ACTTTAGTGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTCCT
572 ACTTTAATAGCTACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19855556 CGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCTTG
637 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
* * *** * *
19855621 TGCGCAA-ACCCTCCCGGCCCCCCTCGATCGTTGAAACCCCAATGGCGCCGGTTAGGTTCTCTGA
702 TGCG-AACACCC-CCCCGACCCCC-CGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTC---
* * * * *
19855685 CGATGCTCCGACGATGGTGCCCCGGTAAAGAAAAATACGGCACCAGTACATGCCTGAGCCCAGCA
761 CGA-----CGACTAT-GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * *
19855750 TGTGCTGTCGTAACCCTCAGT-CTAGTTCGATCTTAGACTGGAAATGAACTCCGTATGCTTA-GA
820 TGTGCTGTCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAACGAACTCTGTATGC-TAGGA
19855813 C
883 C
* *
19855814 TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
* * * * * * *
19855879 AAGGGCGGGATGCGCAAGCCGAGAATCGACCTGGTCACCCTCTGTGTGCTGCCGATCCTGCTGCC
66 AGGGGCGGGATGCGCAAGCCG-GGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACC
* * ** **
19855944 ACAACCCTCAGTCCGATCCAATCTTAGACTTTGAATGAACT-TCGTATGCCTAAGCCAACCGACG
130 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACG
* * * *
19856008 AAACGAGCGGGCAGGCGGGCCGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCAGTTGATC
194 AAACGA-C-GGC-GGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
19856073 GATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATAGC
252 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
19856138 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
317 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
** * *
19856203 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAGATTTT
382 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
19856256 GTGACCATTT
Statistics
Matches: 4351, Mismatches: 392, Indels: 237
0.87 0.08 0.05
Matches are distributed among these distances:
845 3 0.00
847 1 0.00
850 2 0.00
851 5 0.00
852 441 0.10
853 89 0.02
854 20 0.00
856 1 0.00
858 4 0.00
859 1 0.00
860 1 0.00
863 1 0.00
869 2 0.00
870 195 0.04
871 76 0.02
872 2 0.00
873 4 0.00
874 171 0.04
875 1 0.00
877 59 0.01
878 99 0.02
879 5 0.00
880 6 0.00
881 1330 0.31
882 37 0.01
883 2 0.00
886 3 0.00
888 5 0.00
889 5 0.00
891 2 0.00
893 481 0.11
894 21 0.00
895 18 0.00
896 437 0.10
897 1 0.00
898 12 0.00
899 240 0.06
900 60 0.01
901 225 0.05
902 5 0.00
903 2 0.00
904 71 0.02
905 202 0.05
907 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCA
CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
ACGACGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
ACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCA
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGCTAC
TGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCC
CGACCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGACTATGTGCCCCGGT
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGAT
CCGATCTTAGACTGGGAACGAACTCTGTATGCTAGGAC
Found at i:19855825 original size:26 final size:26
Alignment explanation
Indices: 19855781--19855833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19855771 CTAGTTCGAT
*
19855781 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
19855807 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
19855833 C
1 C
19855834 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:19857945 original size:26 final size:26
Alignment explanation
Indices: 19857909--19857987 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19857899 CTGGTCCGAT
19857909 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
19857935 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
19857961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
19857987 C
1 C
19857988 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:19858834 original size:26 final size:26
Alignment explanation
Indices: 19858805--19858855 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19858795 CTGGTCCGAT
*
19858805 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAAAGAAATCCGTATG
*
19858831 CTTAGACTGGGAAAGAACTCCGTAT
1 CTTAGACTGGGAAAGAAATCCGTAT
19858856 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAAATCCGTATG
Found at i:19859729 original size:26 final size:26
Alignment explanation
Indices: 19859700--19859749 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19859690 CTGGTCCGAT
*
19859700 CTTAGACTGGGAGTGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
19859726 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19859750 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:19860660 original size:26 final size:26
Alignment explanation
Indices: 19860610--19860660 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19860600 CGGTCCGATC
* *
19860610 TTAGACTGGGAATGAACTGCTTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
19860636 TTAGGCTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
19860661 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:19861546 original size:26 final size:26
Alignment explanation
Indices: 19861510--19861562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19861500 TAGGTCCAAT
*
19861510 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19861536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19861562 C
1 C
19861563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19861868 original size:901 final size:899
Alignment explanation
Indices: 19857521--19867746 Score: 12242
Period size: 895 Copynumber: 11.5 Consensus size: 899
19857511 AGGGGTGGGA
* * *
19857521 TGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
19857586 AAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19857651 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTAT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
19857716 GATGAGGGATAGGGGGCCAATATAAAGGGCCAAGTACCAG----C-T--C-C--CAT-T--GCAC
196 GATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
19857768 A---------CCCCCGATCA-TCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTTCG
260 ACCCCCCCGCCCCCCGATCACT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCG
* * * *
19857823 ACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCG
324 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
19857888 TAACTCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGGCTGGGAATGAAC
389 CAAC-C-C--TC---T--G-TC-----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAAC
*
19857953 TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
428 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
19858018 TC-ATCAGCAGGCCAGAGGGGCGCGATGCACAAGCTGGGGATCGGCCGAGTCCCCCTCTGCGTGT
493 -CGCTCAGC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC
* * * * * * * * * * **
19858082 TGCTGATCTTGCTCCCATAACCCGCTGTCTGATTTGATCTTAGATTGTGAATGAACTCCGTATAA
556 TGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * *
19858147 CTAACCCAACCAATGAAAC-A-----A----ATGGGC-GG-AC-AAGCTGGCCAGAGAGACGGGA
621 CTAAGCCAACCGACGAAACGAGCGGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
19858199 TGCGTAAGCCGTGTATTGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCC
686 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
19858264 AATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
751 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
19858329 GCAAGATGACTCTTTTTC-ATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGGTTTTTTAAA
816 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAA
* *
19858393 ATTTTTTAGGAAGGAGTCT
881 ATTTTTTCGGAAGGAGTTT
* *
19858412 TGGCCCCAAACTTGGTAGATGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * **
19858477 AAACTCGATGTGTGCAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGATGCTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
19858542 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGTGGGTGAGGGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
19858607 GATGAGGGATAGGGGGCCAGTATAA--G----G-----G------T-GCACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** *
19858654 CCCCCCCGACCCCCCTGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCG
261 CCCCCCCG-CCCCCC-GATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCG
* ** * * * * *
19858719 ACGGTGGTGCTTCGATGAAGAAAAATGTGGCCCCAGCACATGCTCGAGCCCAGGATGTGCTGCCG
324 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
19858784 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAAAGAAC
389 CAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
19858849 TCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGAT
454 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGAT
* * ** * * *
19858914 GCGTAAGTCAAGAATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGG
518 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGG
* ** *
19858979 TCCGGTCCAATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGT
583 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-
* * * * * *
19859044 GGGAGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGT
646 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
**
19859109 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAACC
711 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
19859174 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAGGATGACTCGTTTTCTATTTTT
776 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
19859239 GACGATTTTTGAAACTTTTTACGGTTC---A------AGATTTTTTTCGAAAGGAGTTT
841 CACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19859289 TGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
19859354 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19859419 GGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19859484 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCGCCCATCGGACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
19859549 CCCCCCCGGCCCCCCCGATCGCCT-GAACCCCAATGTCGCCGGTCAGGTTCTCCGGC-GATGCTC
261 CCCCCCC-G-CCCCCCGATC-ACTGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCTGATGCTC
* * * * * * *
19859612 TGATGATGGTGCCCCGACGAAGTAAAATGCGGCTCCAGCACATGCCTGAGCCCAACATGTGCTGT
322 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
19859677 CGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAGTGAACTCCGTACGCTTAGACTGGGAATGA
387 CGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * **
19859742 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGCTAACCAGAGGGGCGGG
452 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGG
* * * * * * * * *
19859807 ATGCACAAGCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTACTGATCCTGCTACCATAACCCTT
516 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* *
19859872 GGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
581 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
19859937 GCAGGTGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
646 G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
19860002 GTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTACATGCCAATGCCACTTTTATGACTTGTAA
709 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
19860067 ATTCATACAATGATCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
774 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
19860132 TTCATGACTTTTGAAACTTTTTATGGTTCGGGATATTTTAAAATTTTTTCGGAAGGAGTTT
839 TTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19860193 TGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
19860258 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
** * * *
19860323 TACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * * *
19860388 GATGAGGGATCGGGGCCCAATATAAGGGCCAACTACCAGCATCCATCACACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
19860453 CCCCCACCCCTCGACCACCCCGATC-GTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGCCGAT
261 ---CC-CCCC-CG-CC-CCCCGATCACT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGAT
* *
19860517 GCTCCGACGATGGTGCTCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
318 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
19860582 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTGCTTATGTTTAGGCTGGGA
383 CTGCCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * **
19860647 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCATTCAGCGGGCCAGAGGGG
448 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGG
* * * * * *
19860712 CAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAAC
512 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
** * * * ** *
19860777 CCTATGTCCGGTATGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACTGACGAAACGA
577 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
19860842 GCGGGCGGACGGGTGGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
642 GCGGG-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
19860907 TAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACGTCCCAATGCCATTTTTATGGCTT
705 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
19860972 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCT
770 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
19861037 ATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATATTTTAAAATTTTTTCGGAAGGAGTTG
835 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
19861102 TGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
19861167 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTCAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
19861232 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTATGAGTTCTCAAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19861297 GATGAGGGATAAGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAGA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
19861362 -CCCCCCGCCCCCCGATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACT-ATGCTCCGG
261 CCCCCCCGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-CTGATGCTCCGA
* * * * *
19861425 TGACGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGC
325 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
** * *
19861490 AACCCTCTGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
390 AACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** *
19861555 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGATGCTCAGTCGGCCAGAGGGGCGAGATG
455 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATG
* * * * *
19861620 AGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCACAAACCTCGGT
519 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * * *
19861685 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCG
584 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-G
* * * * *
19861750 AGCGGGCAGGCGGGCATTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATG
647 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
19861815 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAGTT
712 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
19861880 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTC
777 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
19861945 ACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAGTAGTTT
842 ACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * *
19862003 TGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGTAAGCAC-AAAAAAGTCAGCTCA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
19862067 ACACTTGAAGTGTACAAGATTTTGTGACCATTTGAATACAGTGTCCCCATTTTAGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
19862132 GGCTACTGGTAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19862197 GATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCACACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * **
19862262 CCCCCCGGCTTCCCCGAT-AGCCAGAACCCCAATGCCGTCGGTCAGGTTCT---C---TG----G
261 CCCCCCCGC-CCCCCGATCA-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCG
* * *
19862316 -CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCATCATGTGCTGCCG
324 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
19862380 CAACCCT-TGGTCCTGTCTGATCTTAGACTGGGAATGCACTCCATATGCTTAGACTGGGAA-GAA
389 CAACCCTCT-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-A
* * * * * * * *
19862443 ACTCCGTATTCCAAAGTCAACCCATGAAACGAGCGTGTGGGTGTTCAGCCAGCCAGAGGGGTGGG
452 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGG
** ** * * * * * *
19862508 ATGCATAAGCCGGGGATCAACCGAGTCCCCCTCTACGTGTTGTCGATCCTGCTGTCATAACCCTC
516 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* *
19862573 GATCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
581 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * * * *
19862634 -A-CGGGCAGGCGGGCATTATGTCGGCCAGAGAGACAGGATGCGCATGTCGTGGATCGATA-GGT
646 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
19862696 CGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATCCCATTTTTATGGCTTGTAAA
711 -GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
19862761 TTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
775 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
19862826 TCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCGGAA-GAGTTT
840 TCACGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19862886 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAAGTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
19862951 AAACTCGAAGTGTACAAGATTTTTGTGGCCATTTGAGAAAAGTGTCCCCGTTTCAGACACTTTAA
66 AAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
19863016 TGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGATT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
19863081 TGATGAGGGATAGGGGGCCAATATAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
195 TGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
19863146 CACCCCCCTCGTCCCCCCCGATCGCTAGAAGCCTAGTGTCGTCGGTCAGGTTCT-C-C----G--
259 CACCCCCC-CG--CCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCT
** * *
19863203 --G-CGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTG
321 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * *
19863265 CCGCAACCAT-TGGTCCGATCCGATCTTAGATTTGAAATGAACTCCATATGCTTAGACTGGGAAT
386 CCGCAACCCTCT-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
19863329 GAACTCC--A----TAAGTCAACCCACGACACGAGTGTGCGAGCGCTCAGCCGGCCAGAGGGGCG
450 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCG
* * * ** *
19863388 GGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAAACC
514 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * * * *
19863453 TTGGTCTGGT-TCAATCCTAGATTGGGAATGAACTCCGTATGCCCAAGCCAACCGACAAAACGAG
579 TCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* ** * * *
19863517 CGTGCAGGCGGATGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGAT
643 CG-GGA-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
19863582 AGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
706 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
19863647 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTA
771 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * **
19863712 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAAAGTTT
836 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19863776 TGGCCGCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
19863841 AAACTCGAAGTGTACAATATTTTGTGACCATTTTAAAAAAAGTGTCCCCATTTCAGACAC-TTAA
66 AAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * ** *
19863905 TGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGTTCTACAAGGGGGTGTGAGTTCTCGAGGAT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
**
19863970 TGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * ** * * * * * * *
19864035 A-CCCCACGGCCCCCGATCGTTGGAACCCCAATACCGCCTGTCAGGTTCTCCGGTGAAGCTACGG
260 ACCCCCCCGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCGA
* ** * * * * * **
19864099 CGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACATTCTCGAGCCTAGCATTTGCTGTTGC
325 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
19864164 AA----CTGT-C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACT
390 AACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** ** * * * *
19864203 CCGTATGCCTAAGTCAACCCATTAAATAAGCATGCTGGTGCTCAACCGGCCAGAGGGGCGGGATG
455 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCGGCCAGAGGGGCGGGATG
* * ** * * *
19864268 CGCAAGTCGAGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCATCGGT
519 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
** * * * *
19864333 CTGGTCCAAACTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCG
584 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-G
* * * * * * * *
19864398 GGCAGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGTATGCCATGGATCGATAGGTTG
647 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * ** *
19864463 GTAGGTGGGTTCAGGCACATCTTCATATTTTTGTGTCCCAATGCCATTTTTATGGCTTGTAAATT
712 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* **
19864528 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTATTTTTCTATTTTTC
777 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
19864593 ACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGATTTT
842 ACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
19864651 TTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
19864716 AAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
19864781 TGGCTGCTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCTCGAGGT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGT
* * *
19864846 TTGATGAGGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCATTGCACATCATGAGCGCA
194 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
19864911 CACCCCCTTCGGCCCCCCGATC-GTCGGAACCCCAACG-C-TACTGGTCAGGTTCTCCGGTGATG
259 CACCCCC--CCGCCCCCCGATCACT-GGAACCCCAATGCCGT-C-GGTCAGGTTCTCCGCTGATG
* *
19864973 CTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
319 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
19865038 TGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
384 TGCCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
19865103 TGAACTTCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGC
449 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGC
* * * * *
19865168 GGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTACTGCATGCTGCTGATCGTGCTGCCGCAAC
513 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTGCCACAAC
* * * * * *
19865232 CCTCAGT-TCGATTTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAACG
577 CCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
19865296 AGC-GG-GCGGGCAGGCGGGCACTACGCCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGAT
641 AGCGGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
**
19865359 AGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCT--ATGTACCAATGCCATTTTTATGGCT
706 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCT
* *
19865422 TGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTC
769 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * * * * *
19865487 TATTTTTCACGATTGTCAAAAATTTTTGCAGTTTGAGAGTTTTTAAAATTTTTTCGGAAGGATTT
834 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
19865552 T
899 T
* * * * * *
19865553 TGGCCCCAAAATTAGTAGACATGATCCTTGTGTTTTCT-TTGGCATGTACGAAAAAATTCAGCTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTCAGCTA
* *
19865617 AAAAATCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
65 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
19865682 TGGCTGCTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCTCGAGGT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGT
* ** *
19865747 TTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCAAACATCATGTGTGCA
194 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
19865812 CAATGCCCCCCGACCCCTCCAATCGCCT-GAACCCCAATACCGCCGGTCAGGTTCTCCAG-TGAT
259 C-A-CCCCCCCG-CCCC-CCGATC-ACTGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCTGAT
* * * *
19865875 GCTCC-AGCGATGGTGCCCCGGCGAAGAAAAATGC-ACACCAGCACATGCCCAAGCGCAGCATGT
318 GCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
19865938 GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACT-GG---G-A------ATG---A-AC----
382 GCTGCCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
19865984 --T---CT--GTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGG
447 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGG
* * * * *
19866042 ACGGGACGTGCAAGTCGGGGATCGACCGGGTCCCCCTCTGC--G-T---G---CTGCTG---CAA
511 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAA
* ** *
19866095 CCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACG-AA--
576 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
19866157 A---TGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGGCGTGGATCCAT
641 AGCGGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *** *
19866219 AGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAACGCCATTTTTATGGCTTG
706 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
19866284 TAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
771 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * ** *
19866349 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTGGGGAAGGTGTTT
836 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19866413 TGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
19866478 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAAACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
19866543 AGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19866608 GATGAGGGATAAGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGTGTACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * *
19866672 -CCCCCCGGCCCCTGATCACTGGAACCCTAATGCCGTCAGTCAGGTTCTCCGATGATGCTCTGGC
261 CCCCCCCGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCGAC
* ** * *
19866736 GGTGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
326 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
19866801 ACCCT-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
391 ACCCTCT-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * **
19866865 TTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCTAGCCAGAGGGGCGACATG
455 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATG
* * ** * * * * *
19866930 CGCAAGCTGAGGATCGGTTGGGTCCCCCTCTACGTGCTACCGATCTTGCTACCATAACCCTCGGT
519 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * *
19866995 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGGCAACCGACGAAACGAGC-GG-G
584 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAG
* * ** * *
19867058 -TGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATAAGCAAGCCGTTGATCGGTAGGGTGGT
649 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
19867122 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATCCA
714 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
19867187 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
779 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
19867252 GATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTT
844 GATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
19867308 TTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
** *
19867373 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTTTTTCGGACACTTTAAT
66 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
19867438 GGCTACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19867503 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACTTCATGTGCGCAGA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * * *
19867568 CCCCCCCCGGCCCCTCCTATC-GTCGGGACCCTAATGTCGTCGGTCAAGTTTTTCGGC-GATGCT
261 -CCCCCCC-GCCCC-CCGATCACT-GGAACCCCAATGCCGTCGGTC-AGGTTCTCCGCTGATGCT
** ** * ** **
19867631 CCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAACACATGCTTGAGCTTAGCATGTGCTG
321 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
19867696 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
386 CCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
19867747 CTAAGTTAAC
Statistics
Matches: 8085, Mismatches: 1003, Indels: 485
0.84 0.10 0.05
Matches are distributed among these distances:
852 3 0.00
853 61 0.01
854 62 0.01
855 9 0.00
857 1 0.00
858 36 0.00
859 38 0.00
860 387 0.05
861 1 0.00
862 2 0.00
863 2 0.00
864 51 0.01
865 4 0.00
867 5 0.00
868 1 0.00
869 24 0.00
870 196 0.02
871 7 0.00
872 3 0.00
873 3 0.00
874 5 0.00
875 483 0.06
876 132 0.02
877 297 0.04
878 9 0.00
879 9 0.00
880 179 0.02
881 2 0.00
882 154 0.02
883 253 0.03
884 89 0.01
885 279 0.03
886 84 0.01
887 8 0.00
888 193 0.02
889 122 0.02
890 310 0.04
891 483 0.06
892 59 0.01
893 4 0.00
894 4 0.00
895 1029 0.13
896 147 0.02
897 2 0.00
898 9 0.00
899 5 0.00
900 319 0.04
901 768 0.09
902 420 0.05
903 70 0.01
904 271 0.03
905 11 0.00
906 168 0.02
907 3 0.00
908 10 0.00
909 799 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTGATGCTCCGAC
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGCG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
Found at i:19865093 original size:26 final size:26
Alignment explanation
Indices: 19865064--19865116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19865054 CCAGTCTGAT
19865064 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
19865090 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19865116 C
1 C
19865117 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19872412 original size:597 final size:588
Alignment explanation
Indices: 19871284--19872472 Score: 1794
Period size: 597 Copynumber: 2.0 Consensus size: 588
19871274 CCCCTCTACA
* *** *
19871284 TGCTGCCAATCCTACTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTTCGTA
1 TGCTGCCAATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTCGGA
* *
19871349 TGCCTAAGCCAACCGATGAAACGAACGGGCGGACGGGCGGGCGCTACATCGGACGAGATACGAAA
66 TGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACATCGGACGAGATACGAAA
* * * *
19871414 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCA
131 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
19871479 TTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAAAC
*
19871544 GACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTT
261 GACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGC-GTTCAAGATTTTTTAAAATTTTTT
* * * * * *
19871609 CGGAAGGAGTTTTGGTCATAAAGTTGGTAGACGTTAGCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGAGCCTCGTATTTTTGTTGGCATGCACAAAA
*
19871674 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTTTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
* *
19871739 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAG
* * * **
19871804 TTCTGGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACAT
19871869 CATG
585 CATG
* * *
19871873 TGCTGCCGATCCTGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAAC-TCTGG
1 TGCTGCCAATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTC-GG
* * *
19871937 ATGCCTAAGGCAACCGACGAAACGAGCGGGCGGACGGGCTGGCGGGCACTACGTCGGCAGAGAGG
65 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGAC--G--GGCGGGCACTACAT---C-G-GA--
* * * *
19872002 CGGGATTCGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
119 CGAGATACGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
19872067 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTT
184 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTT
19872132 TCATGGCAAAACGACTCGATT-TCTATTTTT-ACGATTTTTGAAACTTTTGTG-GTTCAAGATTT
249 TCATGGCAAAACGACTC-ATTCTCTATTTTTCACGATTTTTGAAACTTTT-TGCGTTCAAGATTT
* *
19872194 TTTAAAATTTTTTCGAAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTT
312 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGAGCCTCGTATTTTTGTT
*
19872258 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
377 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAA
* * *
19872323 GTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
442 GTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTT
19872388 AAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGC
507 AAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGC
19872453 ACCCATCGCACATCATG
572 ACCCATCGCACATCATG
19872470 TGC
1 TGC
19872473 GCACACCCCC
Statistics
Matches: 540, Mismatches: 46, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
588 2 0.00
589 85 0.16
591 1 0.00
593 12 0.02
596 1 0.00
597 241 0.45
598 31 0.06
599 18 0.03
600 146 0.27
601 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (588 bp):
TGCTGCCAATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTCGGA
TGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCACTACATCGGACGAGATACGAAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAAAC
GACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGCGTTCAAGATTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGAGCCTCGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATC
ATG
Found at i:19872678 original size:26 final size:26
Alignment explanation
Indices: 19872627--19872679 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19872617 CCGGTCCGAT
* **
19872627 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAAATCAATATG
*
19872653 CTTAGACTGGGAATGAAATCAATATG
1 CTTAGACAGGGAATGAAATCAATATG
19872679 C
1 C
19872680 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAAATCAATATG
Found at i:19873675 original size:26 final size:26
Alignment explanation
Indices: 19873646--19873698 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19873636 CCGATCTGAT
19873646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19873672 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19873698 C
1 C
19873699 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19874572 original size:25 final size:26
Alignment explanation
Indices: 19874544--19874595 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19874534 CTGGTCCGAT
*
19874544 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19874569 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19874595 C
1 C
19874596 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19875470 original size:26 final size:26
Alignment explanation
Indices: 19875418--19875470 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19875408 CCGGTCCGAT
* *
19875418 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
19875444 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
19875470 C
1 C
19875471 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:19875812 original size:871 final size:873
Alignment explanation
Indices: 19873619--19878859 Score: 6543
Period size: 899 Copynumber: 5.9 Consensus size: 873
19873609 ACCGATCCTA
* * *
19873619 CTGCCGTAACCCTCGTTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
19873684 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAGA-GGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG
** ** * * * **
19873748 CATGATGCAAAAGCTGAGGATCGGTCGGGTCCCCCTCTGCGTACTACCGATTCTGCCGT-CGTAA
131 CGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTG-C-TACACAA
** * *
19873812 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG
194 CCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * * * * *
19873877 AACGAGCGAGC-GGGCGGGCAGGTGCTACGCCGGCTAGAGAGATGGGATGCGCAAGGCATGGATC
259 AGCGGGCGGGCAGGTCGGGCA----CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
19873941 GATAGGGTGGTTGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTTTGGC
320 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGC
19874006 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--C---TT
385 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * ** * *
19874066 CTATTTTTCATGATTTTGAAAACTTTTTGTGGTTCGGGATTTTTTTTAAATTTTTTCGGAAGGAT
450 CTATTTTTCA-AATTTTTAAAACTTTTTACGGTTC-GGA-TTTTTTAAAATTTTTTCGGAAGGAG
* * *
19874131 TTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
512 TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGC
* *
19874196 CAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
577 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
19874261 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGG
642 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
19874326 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
707 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGAGC
* * * *
19874391 ACACCCCGCCGGCCCCTCGGATCATCGGACCCTAATGCCGCCGGTCAGGTTCTTCGGCGATGCTC
772 A-A----------CCC-C-GA--A-C---CGC--AT---GCCGGTCAGGTTCTCCGGTGATGCTT
* * * * *
19874456 CGAGGATGGTGCCCCGGCAAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
813 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * *
19874517 CTGAGGCAACCTTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACAGGGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
19874581 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG
* * * * * *
19874646 CGGGATGTGCAAGCTGGGGATTGG-CTGGGTCCCCCTCTGCATGTTGCCGATCCTGCTGTCACAA
131 CGGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCT-ACACAA
* * *
19874710 CCCTTGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACG
194 CCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
19874775 AGCGTGCAGGCGGGCGGGT-GGGCACTACGTCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
259 AGC--G--GGCGGGCAGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
19874839 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTACATGCCAATGCCATTTTTATGGC
320 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGC
19874904 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
385 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
19874969 CTATTTTTCACAATTTTCAAAAC-TTTTAGCGGTTCGGTATTTTTTAAAATTTTTTCGGAAAGTG
450 CTATTTTTCA-AATTTTTAAAACTTTTTA-CGGTTCGG-ATTTTTTAAAATTTTTTCGGAAGGAG
* * *
19875033 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGC
512 TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGC
* *
19875098 TAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTT
577 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTT
* *
19875163 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAG
641 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
19875228 GTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACGCATCAT-T-A
706 GTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGA
* * * *
19875291 G-AACCCC-AA-CGC-TGCTGGTCAGGTTCTCCGGCGATTCTTCGACGATGGTGCCCCAACGAAG
770 GCAACCCCGAACCGCATGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGACGAAG
* * *
19875352 AAAAATGCGACACCAGAACATGCCCGAGCGCAGCATGTG
835 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
19875391 CTACCACAACCCTCGATCCGGTCCGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * **
19875456 ATGAACTCTGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAACCAGATGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG
* * * * * **
19875521 CGGTATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCTGGAAC
131 CGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTAC-ACAAC
* * ** *
19875586 CCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACTAACAAAACGA
195 CCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
19875651 GCGGGCGGGC-GGTCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAAA
260 GCGGGCGGGCAGGTCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
19875714 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
324 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGT
* *
19875779 AACTTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
389 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** *
19875844 TTTCCATAATTTTTGAAAA-TTTTTGTGGTTCAGGATTTATTAAAATTTTTTCGGAAGGAGTTTT
454 TTTTCA-AATTTTT-AAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
19875908 TGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGGACAGAAATATTCAGCTAAA
516 AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAA
*
19875973 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATG
581 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
19876038 GCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTG
646 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* ** *
19876103 ATGAGGGCTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACAC
711 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGAGCA-A-
* * *
19876168 CCCCCGGCCCCCCCGATCATCAGAACCCCAAAGCCGCCGATCAGGTTCTCCGGTGATGCTTCGGC
774 ------------CC---C--C-GAACCGC-ATGCCG--G-TCAGGTTCTCCGGTGATGCTTCGAC
** **
19876233 GAAAGTGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTG
817 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** *
19876290 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGGCTGGGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
19876355 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAG-TGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAT-GG
* * *
19876419 GCGGGATGCGCAAGTTGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAA
130 GCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTA-CACAA
** *
19876484 CCC-CTAATCCAGTCTGATCTTAGAATGGGAATGAACT-CGATATGCCTAAGCCAACCGACGAAA
194 CCCTC-GGTCCAGTCTGATCTTAGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAA
* * *
19876547 CGAGCAGGCGGGCAGG-CGGGCACTACGTCAGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
257 CGAGCGGGCGGGCAGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
19876611 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTT
322 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTT
* *
19876676 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCT
387 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
19876741 ATTTTTCAAGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAGTTTTTTCGGAAGGAGTTT
452 ATTTTTCAA-ATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19876806 TAGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAA
515 TAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAA
* * *
19876871 AAAATTGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAAT
580 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
19876936 GGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTT
645 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
19877001 GATGAGCGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
710 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGAGCA-A
* *
19877066 CCCCCCCGGCCCCCCCGATCACCAGAACCCCAAAGCCGCCGATCAGGTTCTCCGTTGATGCTTCG
774 ------------CCCCGA--ACC-G-----C-ATGCCG--G-TCAGGTTCTCCGGTGATGCTTCG
* * * *
19877131 GCGAAGGTGCCCCCACGAAGAAAAATTTCGGCACCAGCACATGCCCGAGCCCAGCATGTG
815 ACGATGGTGCCCCGACGAAGAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * ** *
19877191 CTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGGCTGGGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
19877256 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGCGCTCAGCCGGCCAG-TGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAT-GG
* *
19877320 GCGGGATGCGCAAGTTGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTACCGATCTTGCTACCACA
130 GCGGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTA-CACA
* ** * * *
19877384 ACCC-CTGATCGGGTCCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
193 ACCCTC-GGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
19877448 TGAGCAGGCGGGCAGG-CGGGCACTACGTCAGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
257 CGAGCGGGCGGGCAGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
19877512 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTT
322 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTT
*
19877577 GTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
387 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
19877642 ATTTTTCAAGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
452 ATTTTTCAA-ATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
19877707 TAGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAA
515 TAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAA
19877772 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
580 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
19877837 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
645 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
19877902 GATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
710 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT--G---A
* * * * *
19877967 CCCCCCGGCCCCCTCGACCGCCAGAACCCCAATGTCGCGGGTTAGGTTCTCCGATGATGCTCCGA
770 -------G------CAACC-CC-GAACCGC-ATG-C-C-GGTCAGGTTCTCCGGTGATGCTTCGA
* * *
19878032 TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGAG
816 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * * *
19878090 TTGCCACAACCCTTGGTCCGATCCGATCTTAGGCTGGGAATGAACTCTGTTTGCTTAGACTGCGA
1 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
19878155 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGA-GGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG
* * ** * * * * * * * *
19878219 ACGGGATGTGCAAGCCGATGATTGGTCAGGTCCCACTCTACGTGCTACCGATCCTACCACTGCAG
131 -CGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTAC-ACAA
*** * *
19878284 CCCTCGGTTTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
194 CCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
19878349 AGCGGACGGGC--GTGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAT
259 AGCGGGCGGGCAGGT-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
19878412 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTG
323 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTG
** * *
19878477 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGTTGGCAAGACGACTCCTTTTTTA
388 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
19878542 TTTTTCACGATTTTTGAAACTTTTTATGGTTCGAAATTTTTTAAAATTTTTTCGGAAGGAGTTTT
453 TTTTTCA-AATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
19878607 AGCCCCAAACTTGGTGGACGTGATCCTTGTAGTTTTT-TTGGGATGCACAAAAAAATTCAGCTGA
516 AGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAATATTCAGCTAA
* * *
19878671 AAACTTGAAGTGTACAAGATTTTGTTACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAAT
580 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
19878736 GGCTACTGGCAGCAATCCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
645 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
19878801 GATGAGGGATAGGGGACCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTG
710 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
19878860 CGCACACACC
Statistics
Matches: 3888, Mismatches: 347, Indels: 217
0.87 0.08 0.05
Matches are distributed among these distances:
869 42 0.01
870 103 0.03
871 316 0.08
872 11 0.00
873 2 0.00
874 103 0.03
875 194 0.05
876 1 0.00
877 1 0.00
880 2 0.00
885 1 0.00
886 2 0.00
887 1 0.00
889 2 0.00
890 3 0.00
891 1 0.00
892 2 0.00
893 3 0.00
894 5 0.00
895 1 0.00
896 4 0.00
897 90 0.02
898 309 0.08
899 1469 0.38
900 116 0.03
901 771 0.20
902 138 0.04
903 140 0.04
904 43 0.01
906 5 0.00
907 2 0.00
908 2 0.00
913 1 0.00
918 1 0.00
919 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG
CGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACACAACC
CTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCAGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCAAATTTTTAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGAGCAACCCCGAA
CCGCATGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTG
Found at i:19876367 original size:26 final size:26
Alignment explanation
Indices: 19876317--19876369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19876307 CCGATCCGAT
**
19876317 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19876343 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19876369 C
1 C
19876370 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19877256 original size:26 final size:26
Alignment explanation
Indices: 19877218--19877270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19877208 TCGGTCTGAT
*
19877218 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
19877244 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
19877270 C
1 C
19877271 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:19879089 original size:195 final size:195
Alignment explanation
Indices: 19878757--19879112 Score: 534
Period size: 195 Copynumber: 1.8 Consensus size: 195
19878747 GCAATCCTGT
* *
19878757 AAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAAT
* *
19878822 ATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCGGCCCCCCCGATCA
66 ATAAGGGCAAAGTACCAGCACCCATCACACATCATGCGCGCACACACCCCCGGCCCCCCCGATCA
*
19878887 CCGGAACCCCAATGCCACCGGTCAGGTTCTCATGCGATGCTCCGATGATGGTGCCCCGACGAAGA
131 CCGGAACCCCAATGCCACCGGTCAAGTTCTCATGCGATGCTCCGATGATGGTGCCCCGACGAAGA
* * * *
19878952 AAAATCTCAAATGTTCTTTAAGGGGGTGTCAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAAT
* * * **
19879017 ATGAGGGCCAAGTACCAGCACCCATCACACATTATGCGCGCACAGC-CCCCCGGCTGCCCCGATC
66 ATAAGGGCAAAGTACCAGCACCCATCACACATCATGCGCGCACA-CACCCCCGGCCCCCCCGATC
** **
19879081 GTCGGAACCCCAATGCCATTGGTCAAGTTCTC
130 ACCGGAACCCCAATGCCACCGGTCAAGTTCTC
19879113 CGGCGATGGT
Statistics
Matches: 142, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
195 141 0.99
196 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (195 bp):
AAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAAT
ATAAGGGCAAAGTACCAGCACCCATCACACATCATGCGCGCACACACCCCCGGCCCCCCCGATCA
CCGGAACCCCAATGCCACCGGTCAAGTTCTCATGCGATGCTCCGATGATGGTGCCCCGACGAAGA
Found at i:19880113 original size:26 final size:26
Alignment explanation
Indices: 19880062--19880114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19880052 CCGGTCCAAT
* * *
19880062 CTTATACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
19880088 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
19880114 C
1 C
19880115 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:19880367 original size:20 final size:20
Alignment explanation
Indices: 19880339--19880384 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
19880329 TGCGCAAGCC
*
19880339 GTGGATCGATAGGGTGGTAG
1 GTGGGTCGATAGGGTGGTAG
19880359 GTGGGTCGATAGGGTGGTAG
1 GTGGGTCGATAGGGTGGTAG
19880379 GTGGGT
1 GTGGGT
19880385 TTAGGCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.04, G:0.54, T:0.26
Consensus pattern (20 bp):
GTGGGTCGATAGGGTGGTAG
Found at i:19880994 original size:26 final size:26
Alignment explanation
Indices: 19880963--19881015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19880953 CCGGTCTTAT
*
19880963 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19880989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19881015 C
1 C
19881016 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19881915 original size:26 final size:26
Alignment explanation
Indices: 19881864--19881916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19881854 CTAGTCCGAT
* *
19881864 CTTAGACTGGGAATGAACTGCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19881890 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19881916 C
1 C
19881917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19882806 original size:26 final size:26
Alignment explanation
Indices: 19882770--19882822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19882760 CTGGTCCAAT
*
19882770 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
19882796 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
19882822 C
1 C
19882823 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:19883690 original size:26 final size:26
Alignment explanation
Indices: 19883661--19883716 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
19883651 CCAATCCGAT
19883661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19883687 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19883713 CTTA
1 CTTA
19883717 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19884580 original size:892 final size:889
Alignment explanation
Indices: 19879201--19886459 Score: 8613
Period size: 892 Copynumber: 8.1 Consensus size: 889
19879191 CTGGTCCGAT
* * *
19879201 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * * *
19879266 CGGCCAGAGGGGTGGGATGCACAAG-TCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
19879330 CTGTTGCCACAACCCTCGGTC-CGATCTGATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
19879394 AACCGATGAAATGAGC--G--GGC----GGGCGGGCACTACGCCGGCTAGAGAGACGAGACGTGT
193 AACCGACGAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* ** *
19879451 AAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGGCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
19879516 CATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
19879581 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
19879646 TTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
453 TTCTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
19879711 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
19879776 TTAGACACTTTCATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
19879841 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
19879906 ATCATGTGCGCACACCCCCTCTCGGCCCCCCCGATCG-TCAGAACCCAAATCCCG-CTGGTCAGT
713 ATCATGTGCGCACA-CCCC-C-CGGCCCCCCCGATCGCT-AG-ACCCCAGTGCCGTC-GGTCAGG
* * * * *
19879969 TTCTCCGGCGATGGTGCCACGACGAAGAAAAATTCAGCACCAGCACATGCCCGAGCCTAGCATGT
772 TTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
19880034 GTTGCCGCATCCCTCGGTCCGGTCCAATCTTATACTGGGAATGAACTTCGTATG
836 GCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19880088 CTTACACTGGGAATGAACTCCATATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
19880153 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCACTGCATGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * ** * * * *
19880218 TGCTACAGTAACCCTCCATCTGATTCAATCTTAGACTGGGAATGAATTCCGTACGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19880283 CCGAC-AAA--A-----CA----AACGGGCTGGCACTACGTCGCCCAGAGAGACAGGATGCGCAA
195 CCGACGAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
19880336 GCCGTGGATCGATAGGGTGGTAGGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
260 G-C------C------GTGG-A------TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
19880401 ATTTCTGCATGCCCATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCAC
305 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
19880466 GTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAAGGTTC
370 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * *
19880531 GAGATTTTTTAAAATTTCTT-TGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA
435 GGGATTTTTTAAAATTTTTTCTG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
19880595 TTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACAATT
499 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
19880660 TGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
564 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * *
19880725 TGCACTTTAAGAGGGTGTGAGTTCTC-ACAGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCA
629 TGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
19880789 AGAACCAGCACCCATCGCACATTATGTGCGCACACCCCCCCTGG-CCCCCCGATCG-TCGGAACC
693 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCT-AG-ACC
* * ** * * * * *
19880852 CCAATGTCGTCGGTCAACTTCTCTGGCGATGGTACCCCGACGAACAAAAATGCGACACCAGCACA
754 CCAGTGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACA
* *** * ** *
19880917 TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCACTCCGGTCTTATCTTAGATTGGGAATGAACT
818 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACT
19880982 CCGTATG
883 CCGTATG
* ** * *
19880989 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATGCATGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * * *
19881054 CGACCAGAGGGGCGGGATACGAAAGCTGGGGATCGACCGGGTCCCCTTCTGCGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* *
19881119 TGCT---G--A---TC---C-GG-TCAGATCTTAGACTGGGAATGAACTTCGTATGCCTAGGCCA
130 TGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-
* * * * ** * ** *
19881171 ACACTCTG-GGAAAACGTA-CGGGCAGACGGGTGGAAGGGTACTACACCGGCCAGAGAGACGGAA
193 A-AC-C-GACG-AAACG-AGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
** *
19881234 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATTCC
253 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
19881299 AATGCCATTTTTATGGCTTGTAAATTCACAAAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATG
318 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
19881364 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATATTTTAAA
383 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
*
19881429 ATTTTTT-TGCAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
448 ATTTTTTCTG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
19881493 CCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAATGTC
512 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
19881558 TCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
577 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
19881623 GTTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
642 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * * *
19881688 TCACACATCATGTGCGCACACCCCCACCCCCCAGCCACCCCGATC-ATCGGAACCCTAATGCTGT
707 TCGCACATCATGTGCG--CA----CACCCCCCGGCCCCCCCGATCGCT-AG-ACCCCAGTGCCGT
* * * *
19881752 CGGTCAGGTTCTCTTGCGATGCTCCGACGATGGTGCTCTGACGAAGAAAAATGTGGCACCGGCAC
764 CGGTCAGG------T----T-CTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCAC
* * * *
19881817 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGAT-CTAGTCCGATCTTAGACTGGGAATGAA
817 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGA-TCCGATCTTAGACTGGGAATGAA
* *
19881881 CTGCTTATG
881 CTCCGTATG
* * * *
19881890 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19881955 CGGCCAGAGGGGCGGGTTGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTGCTTGCTGCCAATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** ** *
19882020 TGCTGCCACAACCCTATGTCCCGTAT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * **
19882084 ACTGACGAAACGAACG-GGTGGACGGGA-GGGCGGGCACTGCGCCGGCCAGAGAGGGGGGATGCG
194 ACCGACGAAACGAGCGTGCAGG-C-GGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
** *
19882147 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATTCCAATG
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
19882212 CCATTTTTATGGCTTGTAAATTCACAAAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
19882277 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATATTTTAAAATTT
387 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* *
19882342 TTT-TGCAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCAC
452 TTTCTG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
19882406 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAATAA-TGTCTCC
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCC
* *
19882470 ATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
19882535 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
19882600 CACATCATGTGCGCACACCACCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGG
710 CACATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCG-CTAGACCCCAGTGCCGTCGGTCAGG
* *
19882665 TTCTCCGACTATGCTCCGGCGATGGTGCCCCCGGCAAAGAAAAATGCGGCACCAGGACATGCCCG
772 TTCTCCG---A--------CGATGGTG-CCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * **
19882730 AGCCCAGCATGTACTGTCGCAACCCTCT-GTCTGGTCCAATCTTAGACTGGGAATGAACTTTGTA
824 AGCCCAGCATGTGCTGCCGCAACCCT-TGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
19882794 TG
888 TG
** * * * *
19882796 CTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGTTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * ** * * **
19882861 TGGCCAGAGGGACGGGATGCGCAAGCCT-GGGATCGGTCGGGTCCCCCTCTACGTGTTGTCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAG-CTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
19882925 CTGCTGTCGTAACCCTCGATCTCG-TCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
19882989 AACCGACGAAACGAACAAGCAGGCAGGCA--GGCGAGCATTATGTCGGCCAGAGAGACGGGATGC
193 AACCGACGAAACGAGCGTGCAGGC-GG-ATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
19883052 GCAGGCCGTGGATCGATA-GGTCGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAA
256 GCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
19883116 TCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** * *
19883181 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCAGGATTTTTTAAAAT
385 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
19883246 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATACA
450 TTTTTCTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
19883311 -AAAAAAAGTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGGCGATTTGAGAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
19883375 GTTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
19883440 GTGAGCTCTCGAGATTTGTTGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ***
19883505 CACATCATGTACGCACACCCCCTCGTCCCCCCCGATCGCTAGAAGTCAGTGCCGTCGGTCAGGTT
710 CACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCTAGACCCCAGTGCCGTCGGTCAGGTT
* * *
19883570 CTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAAATGCTCGAGCCCAGCATGTGC
774 CTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
19883635 TGCCACAACCATTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
838 TGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19883687 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAACACAAGTGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGAA-ACGAGCGTGCGGGCGCTCAGC
* * *
19883752 CGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
19883817 TACTGCCACAACCCTTGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19883882 CCGACAAAACGAGCGTGCAGGCGGATGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGTGCAA
195 CCGACGAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
19883947 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
19884012 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATAGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
19884077 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** ** * * *
19884142 -TGAAAAATGTTTTGGCCGTAAACTTGGTAGACTTGATACTTGTATTTTTGTTGGCATGAACAAA
455 CTGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
19884206 AAAATTCAGCTAAAAACTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19884271 CAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19884336 GTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
19884401 TCATGTGCGCACACCCCCTCGTCCCCCCCGATCGCTAGATGCCAGTACCGTCGGTCAGGTTCTCC
714 TCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCTAGACCCCAGTGCCGTCGGTCAGGTTCTCC
* * *
19884466 GACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGCC
778 GACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
19884531 ACAACCATTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
19884579 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAACACAAGTGTGCGAGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGAA-ACGAGCGTGCGGGCGCTCAGC
* *
19884644 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
19884709 TACTGCCACAACCCTTGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCTTATGCCCAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
19884774 CCGACAAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
19884839 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
19884904 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATAGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
19884969 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** ** * * *
19885034 -TGAAAAATGTTTTGGCCGTAAACTTGGTAGACTTGATACTTGTATTTTTGTTGGCATGAACAAA
455 CTGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
19885098 AAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
19885163 CAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAAAGGGGGTGTG
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTG
* *
19885228 AGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * * *
19885293 ATCATGTGCGCACACCCCATGG--CCCCCGATCG-TCGGAACCCCAATACCGCCTGTCAGGTTCT
713 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCT-AG-ACCCCAGTGCCGTCGGTCAGGTTCT
* * * * *
19885355 CTGGTGATGTTACAGCGATGGTGCCTCGCGAAGAAAAATGTGGCACCAGCACATGCTCGATCCCA
776 C------CG----A-CGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** *
19885420 GCATGTGCTGTTGCAACCC----T-CG----G-TC-----C--------AA-TCC-AAT-
830 GCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19885454 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCTGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* * ** * * **
19885519 CGGCCATAGGGGCGGGATGCGCAAGCTGGGGACCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
19885584 TGCTGCCGCAACCATCGATCTGGTCCAAACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * *
19885649 CCGACGAAA-GAAGCGGGCGGGCGGGCGGGCGTGCGGGCACTATGCCAGCCAGAGAGACGGGATG
195 CCGACGAAACG-AGCGTGCAGGC-GG-ATG-G-GCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
19885713 CGCATGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATCCCAA
255 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
19885778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACATGAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** * *
19885843 AAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGGTTTTTTAAAAT
385 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
19885908 TTTTT-TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
450 TTTTTCT-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
19885972 ACAAAAACATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
514 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
19886037 CATTCCGGACACTTTAATGGCTACTGGCAGCAAA-CTGGTAAAATATCAAATGCTCTTTAAGGGG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGG
* * *
19886101 GTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCAC
643 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * * *
19886166 CGCACATCATGTGCAAACACCCTCCCCGG-CCCCCCGATCGTCGAAACCCCATGCCGCCAGTCAG
708 CGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCG-CTAGACCCCA-G-TGCC-GTC-G
* * * *
19886230 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCA
766 G---T-C-A-GGTTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
19886295 AGCCCAGAATGTGCTGCTGCAACCCTCGGTCCGGA-CCGATCTTAGACTGGTAATGAACTCCGTA
824 AGCCCAGCATGTGCTGCCGCAACCCTTGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTA
19886359 TG
888 TG
* * *
19886361 CTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGC
* *
19886426 CGGCCAGAGGGGCAGGATGCGCAAACTGGGGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC
19886460 TTCATATTTC
Statistics
Matches: 5583, Mismatches: 599, Indels: 360
0.85 0.09 0.06
Matches are distributed among these distances:
874 1 0.00
875 180 0.03
876 6 0.00
877 4 0.00
878 87 0.02
879 374 0.07
880 20 0.00
881 68 0.01
883 33 0.01
884 4 0.00
885 420 0.08
886 6 0.00
887 166 0.03
888 5 0.00
889 37 0.01
890 62 0.01
891 555 0.10
892 997 0.18
893 95 0.02
894 8 0.00
895 1 0.00
896 8 0.00
897 5 0.00
898 2 0.00
899 1 0.00
900 2 0.00
901 508 0.09
902 17 0.00
903 459 0.08
904 22 0.00
905 269 0.05
906 518 0.09
907 95 0.02
908 3 0.00
909 498 0.09
910 5 0.00
911 2 0.00
912 2 0.00
913 37 0.01
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGTGCAGGCGGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
TGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGCTAGACCCCAGTGCCGTCGGTCAGGTTCTCCGAC
GATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19884582 original size:26 final size:26
Alignment explanation
Indices: 19884553--19884608 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
19884543 CCAATCCGAT
19884553 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19884579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19884605 CTTA
1 CTTA
19884609 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19886364 original size:26 final size:26
Alignment explanation
Indices: 19886335--19886387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19886325 CCGGACCGAT
* *
19886335 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19886361 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19886387 C
1 C
19886388 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19887067 original size:26 final size:27
Alignment explanation
Indices: 19887031--19887083 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
19887021 CCAATCTTAC
*
19887031 ACTGGGAATGAACTCCGTATG-CTAAG
1 ACTGGGAATGAACTCCATATGCCTAAG
19887057 ACTGGGAATGAACTCCATATGCCTAAG
1 ACTGGGAATGAACTCCATATGCCTAAG
19887084 TGAACCCACG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
ACTGGGAATGAACTCCATATGCCTAAG
Found at i:19887329 original size:691 final size:689
Alignment explanation
Indices: 19885755--19887851 Score: 3009
Period size: 691 Copynumber: 3.0 Consensus size: 689
19885745 GTTTAGGCAC
* *
19885755 ATCTTCATATTTCTACATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAA
* * *
19885820 GCCGTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
65 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* *
19885885 TGCGGTTCGGGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
130 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
19885950 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAACTGTACAAGATTTTGT
195 CATTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19886015 GACCATTTGAAAAAAGTGTCCCCATTCCGGACACTTTAATGGCTACTGGCAGCAAA-CTGGTAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAA
* *
19886079 ATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATA
324 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATA
** * *
19886144 AGGGCCAAGTACCTGCACCCACCGCACATCATGTGCAAACACCCTCCCCGGCCCCCCGATCGTCG
389 AGGGCCAAGTACAAGCACCCACCGCACATCATGTGCACACACCCTCCCCGGCCCCCCGATCGCCG
* *
19886209 AAACCCCATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
454 AAACCCCAT---GCC-GTC-GG---T-C-A-GGTTCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * *
19886274 TGCGGCACCAGCACATGCTCAAGCCCAGAATGTGCTGCTGCAACCCTCGGTCCGGA-CCGATCTT
508 TGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC-ACAACCCTCGGT-CTGATCCGATCTT
* *
19886338 AGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCACA
571 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCACG
* * *
19886403 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAACTGGGG
636 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
*
19886457 ATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC-CTTAA
* * *
19886522 GCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTCT
65 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * *
19886587 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGCCCCAAACTTGGTAGACGTGAT
130 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19886652 CATTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGT
195 CATTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
19886717 GACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
19886782 TCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAA
*
19886847 GGGCCAAGTACAAGCACCCACCGTACATCATGTGCACACACCCTCCCCGGCCCCCCGATCGCCGA
390 GGGCCAAGTACAAGCACCCACCGCACATCATGTGCACACACCCTCCCCGGCCCCCCGATCGCCGA
*
19886912 AACCCCATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
455 AACCCCATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * *
19886977 ACATGCTCGAGCCTAGCATTTGCTGCAACAACCCTCGGTCTGATCCAATCTTACACTGGGAATGA
520 ACATGCTCGAGCCCAGCATGTGCTGC-ACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGA
* *
19887042 ACTCCGTATGCTAAGACTGGGAATGAACTCCATATGCCTAAGTGAACCCACGAAACGAGCGTGCG
584 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCACGAAACGAGCGTGCG
* * *
19887107 GGCGCTCAGCCGGCCAGAAGGACGGGATGCGCAAGCCAGGG
649 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * *
19887148 ATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATTGTCCGTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTAA
* * **
19887213 GCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGATTTTTGAAACTTTT
65 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * * *
19887278 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCTCCAAACTTTGTAGACATGAT
130 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19887343 CTTTGTATTTTTGTTGGCAAGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGT
195 CATTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
19887408 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAGCCTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * *
19887473 TCTCAAATGCTCTTTATGGCGGTGTGAGTTCTTGAGGTTTG-TGAGGGTTAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAA
* * * *
19887537 GGGCCAAGTACCTA-CACCCATCACACATCATGTGCGCACA-CC-CCCCGGCCCACCCGATCGCC
390 GGGCCAAGTA-CAAGCACCCACCGCACATCATGTGCACACACCCTCCCCGGCCC-CCCGATCGCC
* * * * * **
19887599 GGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGCACAGACGATGGTGCCTCGGTGAAGAAA
453 GAAACCCC-ATGCCGTCGGTCAGG-T-T----C--T-C-C-GACGATGGTGCCCCGACGAAGAAA
* * *
19887664 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACTCTCGATCTGGTCCGATCT
506 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG-CACAACCCTCGGTCTGATCCGATCT
* * ** *
19887729 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCTGTATGCCTAAGTTAACCCAC
570 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCAC
* * * *
19887794 GAAACAAGCGTGCGTGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGG
635 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
19887849 ATC
1 ATC
19887852 GATCGGGTCC
Statistics
Matches: 1260, Mismatches: 116, Indels: 39
0.89 0.08 0.03
Matches are distributed among these distances:
688 9 0.01
689 19 0.02
690 69 0.05
691 527 0.42
692 2 0.00
693 1 0.00
694 1 0.00
696 1 0.00
697 2 0.00
698 4 0.00
699 4 0.00
700 1 0.00
701 187 0.15
702 431 0.34
703 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (689 bp):
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
ATTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAG
GGCCAAGTACAAGCACCCACCGCACATCATGTGCACACACCCTCCCCGGCCCCCCGATCGCCGAA
ACCCCATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
CATGCTCGAGCCCAGCATGTGCTGCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
Found at i:19887756 original size:26 final size:26
Alignment explanation
Indices: 19887727--19887779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19887717 CTGGTCCGAT
* *
19887727 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
19887753 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
19887779 C
1 C
19887780 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:19890438 original size:26 final size:26
Alignment explanation
Indices: 19890402--19890454 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19890392 CTGATCTGAT
19890402 CTTAGACTGGGAATGAACGT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
19890428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19890454 C
1 C
19890455 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19890926 original size:900 final size:890
Alignment explanation
Indices: 19887148--19892906 Score: 7297
Period size: 897 Copynumber: 6.5 Consensus size: 890
19887138 CAAGCCAGGG
* * * *
19887148 ATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATTGTCCGTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
19887213 GCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** * * * * * *
19887278 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCTCCAAACTTTGTAGACATGAT
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
19887343 CTTTGTATTTTTGTTGGCAAGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
19887408 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAGCCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
19887473 TCTCAAATGCTCTTTATGGCGGTGTGAGTTCTTGAGGTTTG-TGAGGGTTAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
19887537 GGGCCAAGTACCTA-CACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCACCCGATCGCCG
391 GGGCCAAGTACC-AGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCG
* * * **
19887600 GAACCCCAATGTCGCCAGTC-AGGTTCTCCGACGATGCACAGACGATGGTGCCTCGGTGAAGAAA
455 GAACCCCAATGCCGCCGGTCAAGG-T-T----C--T-C-C-GACGATGGTGCCCCGACGAAGAAA
* * *
19887664 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAA-CTCTCGATCTGGTCCGATC
509 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCT-TCGGTCTGGTCCGATC
* * * *
19887728 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCTGTATGCCTAAGTTAACCCA
573 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
19887793 CGAAACAAGCGTGCGTGCGCTCAGCC-AGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
638 CGAAACGAGCGTACGGGCGCTCAACCGA-CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG
* ** * ** * * * * * *
19887857 GGTCCCCCTTTGCGTGCTGATGATCCTGCTGCTACAACCCTTGGGCTGGTCCGATCTTAGATTGG
702 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAG
* * * *
19887922 GAATGAACTCCGTATGCCTAAGCCAACCAACG-AACGAGCAGGC-GAGCGGGTGGGCACTACGTC
767 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-GCGGGCGGGCACTACGCC
*
19887985 GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
831 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
19888045 ATCTTCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTGAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
19888110 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
19888175 TATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTAGTAGACGTGAT
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
19888240 CCTTGTATTTTTGTTGGCATGCACAAAAAAGTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
19888305 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGTAGCAAATCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
19888370 TCTCAAATGCTCTTTAATGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
19888435 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCG
391 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCG
* *
19888500 GAACCCCAATGCCGCCGGTC-AGGTTCTCCGACGA---TGCTCCGACGAAGAAAAATGGGGCACC
455 GAACCCCAATGCCGCCGGTCAAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * *
19888561 AACACATGCCCGAGCCTAGCATCTGCTG-CTGCAACCCTCGGT-TCGATCCGATCTTAGACTGGA
520 AGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCTTCGGTCT-GGTCCGATCTTAGACTGGG
* * * *
19888624 AATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATACGCCTAAGTTAACCCACGAAACGAGC
583 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * *
19888689 GTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCT
648 GTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCT
* * * * * * * *
19888754 ACGTGTTGCCAATCATGTTGCC-CTAACCCTCTGTCTGGTCTGATCTTAGACTAGGAATGAACTC
713 GCGTGCTGCCGATCCTGCTACCGC-AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTC
* * * *
19888818 CGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCTGGCAGGCACTATGCCGACCAGA
777 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC--G--GGCACTACGCCGGCCAGA
* *
19888883 GAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAT
838 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
19888936 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
19889001 GCCTTCACATGAAATTTCATGGCAAGACGACTCGTTTTGTATTTTTCACCATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * *
19889066 AATGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCTAAAGTTGGTAGATGGGAT
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * *
19889131 CCCTATATTTTTGTTGGTATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAATATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19889196 GACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
19889261 TGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGTGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
19889326 GGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCTCCGG-CCCCCCGACCGACGG
391 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGG
** * *
19889390 AACCCCAATGCCATCGGTC-AGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCA
456 AACCCCAATGCCGCCGGTCAAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
** * * *
19889454 GCACATTACCGAGCCTAGCATGTGCTGTCGCAACCGTT-GGTCCGGTCTGATCTTAGACTGGGAA
521 GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC-TTCGGTCTGGTCCGATCTTAGACTGGGAA
* * ** *
19889518 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCTATAAAATGAGCGT
585 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** * * * * ** * *
19889583 ACGACCGCTCAGCCGGCTAGAGGGACGGGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
650 ACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGC
* * * * * *
19889648 ATGCTGTCGATCCTACTACTGCAACCTTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGT
715 GTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
* *
19889713 ATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCATTACGCCGGCCAAAGAGACGG
780 ATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
*
19889774 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
845 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
19889820 ATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAT
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
19889885 GCCTTCACGCGAAGTTCCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
*** * * * *
19889950 TGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAGCTTGGTAGACATGAT
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
19890015 CCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19890080 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
19890145 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
19890210 GGGCCAAGTACTAGCAGCCAT-AGCACGTCGTGTGCGCACACCTCCCCCGGCCCCCCCGATCGTC
391 GGGCCAAGTACCAGCACCCATCA-CACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCC
* *
19890274 GGAACCCCAATGCCACCGGTCAAGTTCTCTGACTATGCTCCGACGATGGTGCCTCGACGAAGAAA
454 GGAACCCCAATGCCGCCGGTCAAG------G--T-T-CTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * * *
19890339 AATGTGGCACCTGCACATGCCCAAGCCCAGCATATGCTG-CTGCAACCTTCAGTCTGATCTGATC
509 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCTTCGGTCTGGTCCGATC
19890403 TTAGACTGGGAATGAACGT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
573 TTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * **
19890467 ACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGAATGTGCAAGGTGAGGATCGATCG
637 ACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG
* *
19890532 GGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAG
702 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAG
** * * *
19890597 GAATGAACTCTTTATGCCTAAGCCAATCGACGAAACGAACGGGCAGGCGGGCGGGCATTACGCCG
767 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCG
* * *
19890662 GCCAGAGAAACGGGATGCGCAAG-CATGGATCGATAGGGTGGTAGGTGGGTTTAGGGAC
832 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
19890720 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
19890785 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
19890850 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAGACATT-GTAGACATGA
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGA
* * * *
19890914 TCCTTCTATTTTTTTTGGCATGCACAAAATAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
19890979 GGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
19891044 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGAGAGGGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
19891109 AGGGCCAAGTACCAGCA-CCAGTCGCACATCATGTGCGGACACCCCCCCGGCCCCCTCGATCGCT
390 AGGGCCAAGTACCAGCACCCA-TCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCC
* * *
19891173 GGAACCCCAATGCCGTCGGTC-AGGTTCTCCGATGATGCTCCGAAGATGGTGCCCCGGCGAAGAG
454 GGAACCCCAATGCCGCCGGTCAAGGTTCTCC---GA-----C---GATGGTGCCCCGACGAAGAA
* * * * * *
19891237 AAATACGGTACCAGCACTTGCCCGAGCCCAACATGTGCTGTCGCAACCTGCGGT-TCGGTCTGAT
508 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCGGTCT-GGTCCGAT
* ** ** *
19891301 CTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATTTACTTTGTATGCCTAAGTCAATCC
572 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
19891366 ATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGTGGGATGCGCAAGCTGAGGATCGACCG
637 ACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG
* * * * * * * * * * * *
19891431 AGTACCCCTCTGCATACTGCCGATCCTACTGCCACAACCCTTGATTCGGT-TGGATCATAGACTG
702 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGACTA
* *
19891495 GGAATGAACTCCGTATGCCTAAGCAAACTGACGAAACGAGCGGGCGGATGGGCGGGCGGGCACTA
766 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--A--GGCGGGCGGGCACTA
* *
19891560 CGCCAGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
827 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
19891624 ATCTTCATATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
19891689 GCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCAC-------G--A-----
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
*
19891740 T-T-G-TC----------AAAA------C------A-TTTTGGTCCCAAACTTGGTAGACGTGAT
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19891779 CCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTTGATGTGTACAAGATTTTGC
196 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-
* *
19891844 T-ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19891908 ATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGACA-GGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
19891972 AGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-CCCCCCGGCCCGCCCGATTGCCG
390 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCG
* * * * ** *
19892036 GAACCCCAATGTCGCTGGT-TAGGTTCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCAGCACC
455 GAACCCCAATGCCGCCGGTCAAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
19892100 AGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAA
520 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * * * *
19892165 TGAACTCCGTATGGTTAGACTGGGAATGAACTCTGTATGCGTAAGTTAACCCATGAAACGAGTGT
585 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * **
19892230 ACGGGCGTCTC-A---ACCAGAGAGGCGGGATGTGCAAGTCGGGGATCGGCCGGGTCCCCCTCTG
650 ACGGGCG-CTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTG
* * * * * * * * *
19892291 TGAGCTGCCAATCCTGCTACCGCAACCGTCGGTCTGGTCCGATCATAGACTGGGAATGAACTTCG
714 CGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCG
* * * * *
19892356 TATGCCTAAGCCAACTGATGAAACGAGCGGGCTGGCGGGAAAGCGGGCACTACACCGACCAGAGA
779 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC-GG---GCGGGCACTACGCCGGCCAGAGA
*
19892421 GACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
840 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
19892472 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
19892537 GCCTTCACGTGAAGTTTCATGGCAGGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * **
19892602 TATGGTTCGGGATTTTTTATAATTTTTTTGGAAGGAGTTTTGGCCCCAAAGAAT--TAGACGTGA
131 TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGA
* *
19892665 TCCTTGTATTTTTGTTGGCTTGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
19892730 TGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
19892795 AGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
19892860 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
390 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
19892907 TCCGACAGCC
Statistics
Matches: 4242, Mismatches: 499, Indels: 250
0.85 0.10 0.05
Matches are distributed among these distances:
844 3 0.00
845 2 0.00
848 293 0.07
851 145 0.03
852 4 0.00
854 1 0.00
855 1 0.00
857 1 0.00
859 1 0.00
862 45 0.01
863 49 0.01
864 191 0.05
865 3 0.00
871 1 0.00
875 3 0.00
877 4 0.00
883 1 0.00
884 450 0.11
885 9 0.00
886 286 0.07
887 196 0.05
888 75 0.02
889 58 0.01
890 12 0.00
891 459 0.11
892 262 0.06
893 4 0.00
894 1 0.00
895 2 0.00
896 5 0.00
897 611 0.14
898 67 0.02
899 307 0.07
900 467 0.11
901 44 0.01
903 39 0.01
904 140 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (890 bp):
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGG
AACCCCAATGCCGCCGGTCAAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
CGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCG
TGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
Found at i:19892182 original size:26 final size:26
Alignment explanation
Indices: 19892153--19892203 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19892143 TGGTCCGATC
19892153 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
19892179 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCCGTATG
19892204 CGTAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:19894622 original size:26 final size:26
Alignment explanation
Indices: 19894584--19894660 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
19894574 CCAGTCTGAT
* **
19894584 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19894610 CTTATACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19894636 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19894661 AAATAAGTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19895253 original size:931 final size:916
Alignment explanation
Indices: 19892974--19898701 Score: 6456
Period size: 931 Copynumber: 6.4 Consensus size: 916
19892964 CTCAATCCGA
* *
19892974 TCTGATCTTAGATTGGGAATGAACTCCGTATAG-CTAAGCCAACTGAC-AAA--A-C--G-AGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGCCAACCGACGAAACGAGCGGGCAGCG
* * * * *
19893031 GGCGGGCACGACGTCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTTGGTGG
65 GGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** *
19893096 GTTTATGCACATCTTCATATTTTTGTGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * **
19893161 GGTCCTTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* * * *
19893226 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATCTTTTTGGAAGGAGTTTTGGTCCCAAACATGG
260 CGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
19893291 TAGACGTGATCCTTGTATCTTTGTTGGTATGCACAAAAAAATTCAGCTAAAATCTCAAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
19893356 AAGATTTTGTGACAATTTGAAAAAAGTGTCCCCACTTT-AGACACTTTCATGGCTACTGGCAGCA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCA
*
19893420 AACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
19893484 GGCCAAAATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACATGCCCCCCGGCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCC
* * * * * * * *
19893549 TCCGATCGCCTGAACCCCAAAGCCGCCGCTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG-CCC
582 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT---GCGATGGCGCCCC
* * * * * * *
19893613 TAGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCTTGTGCTGTCG-AA---AC---C
644 GA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTC
** * * *
19893671 C--TC-GA--TT-G---GG--T---C-CGAT-CTTAGACTGGGAAAGAACTCTGTATGCTTGGAC
708 CAGTCTGATCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
19893720 TGGGAATGAACTCCGTACGCCTCAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGTCGG
773 TGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAG
** * *
19893785 AGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCC
837 AGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-C
* * **
19893850 ACAACCATCAGTCCGG
901 ACAACCCTCGGTCTAG
* * *
19893866 TCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACTGACAAAACGAGC-GG-A-CGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCGG
* * *
19893928 GCGGGCA-TGACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GTGGGCACT-ACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
19893992 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTCAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
19894057 GGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* * * *
19894122 CAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGG
260 CGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGG
*
19894187 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
19894252 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCCA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
19894317 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
19894382 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCC
* * *
19894447 CCGATCGTCGGAACCCCAATGACACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCGCCTCG
583 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT--G-CGATGGCGCCCCG
* *
19894512 ACGAAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCA
645 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCA
* *
19894577 GTCTGATCTTAGACTAGGAATGAACTTTGTATGCTTATACTGGGAATGAACTCCGTGTGCTTAGA
710 GTCTGATCTTAGACT-GGAATGAAC-TT-TATGCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * *
19894642 TTGGGAATGAACTCCGTATAAATAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCTGGCCA
772 CTGGGAATGAACTCCGTAT-GCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCA
* * * * * * * * *
19894707 CAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGAGTGCCCCTTTGTGTGCTGCCTATCCTGCTGT
836 GAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-
19894772 CACAACCCTCGGTCTAG
900 CACAACCCTCGGTCTAG
* * * *
19894789 TCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTCAGCTAACCAACGAAACGAGCGGGCAGACA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--G-C-
* * * * *
19894854 AGCGGGAGGGCACTGCGCCGACCATAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAG
61 AGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
19894919 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCGATGGCATTTTTATGGCTTGTAAATTCATA
126 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
19894984 CAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * **
19895049 TTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
256 TTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAAC
* * *
19895114 TTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
320 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
19895179 GTACAAGATTTTGTCACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
19895244 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * **
19895309 AGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTATGCACA---------CC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * *
19895365 CCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT--T--G-T---GCCCCA
580 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTGCGATGGCGCCCCG
*
19895422 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAA-CC-C--T-CA
645 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCA
* *
19895482 GTCTG------GTCT-G-AT---C-TTA-G--T---CTGGGAATGAACTCCGTATGCTTAGACTA
710 GTCTGATCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
19895529 GGAATGAACTCCGTATGTCTAAGTTAACCCACGGAACGAGCATGCGGGCGCTCAGCCAGCCAGAG
775 GGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * * * * *
19895594 GGGCGCGATGCACAAGTTGAGGATCGACCAGGTACCCCTTTGCATGCTGTCGATCCTACTGCTGC
839 GGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC-AC
* *
19895659 AGCCCTCGGTCCAG
903 AACCCTCGGTCTAG
** * *
19895673 TCCAATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGATGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCA
* * * *
19895737 GGCGGGCGGGCACTACGCCGACCCGAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
62 -GCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
19895802 GTGGGTTTAGGCACATCTTGATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
126 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * **
19895867 CAGTGGTCCCTTAAGCATGCACGTGAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTCACGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * *
19895932 TTTTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
256 TTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAAC
* * *
19895996 TTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
320 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
19896061 GTACAAG-GTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
19896125 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
19896190 GGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCACAAACCCCCCCGACC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* *
19896255 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTTCGACGATGGTGCC
580 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-T-G-CGATGGCGCC
* * * * * * *
19896320 TCGACGAAGAAAAATGCGGCACCAGCATAGGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
642 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGT
* *
19896385 -C---C-GATC-----C------G------AT-CTTAGATTGGGAATGAACTCCATATGCTTAGA
707 CCAGTCTGATCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** * *
19896427 CTGGGAGTGAACACCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGCCA
772 CTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCA
** * * * *
19896492 GAGGGGCGGGATGCGCAAGCCAGGGATCGGCTGGGTCCCCTTCTGTGTGCTGTCGATCCTACTGC
836 GAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
19896557 -C-A---------TAG
901 ACAACCCTCGGTCTAG
* ** * *
19896562 TC----CTCAG--TCCG---G---TCCG-AT--CTTAG---ACTG--GAAACGAGCGGGCA---G
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCGG
* * **
19896604 GTGGGCACCACGTCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
**
19896669 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** *
19896734 GTCCCTTAAGCCTTCAAATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
* * * * * * *
19896799 GAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTTGGGAGGACTTTTGGCCACAACCTTGGT
261 GAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
19896864 AAACATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTCA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
19896929 AGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
19896994 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-TTCTCGAGGTTTGATGAGGGATAGAGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * *
19897058 GCCAATATAAGGGTGAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * ** * **
19897123 CAATCGTCAGAACCTCAATGCTGTTGGTCAGGTTCTCCG--G-TGATG-G-T--C-CCCCGGTGA
584 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTGCGATGGCGCCCCGACGA
* * * * *
19897180 AGAAAAATACGGCACC-GACACATGCCCTAACCCAACATGTGCTGCCGTAACCCTTGGT-C---C
649 AGAAAAATACGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTC
* *
19897240 -GA--TT---C--G-AT---C-TTA-GATT-GA----GAATGAACTTCGTATGCTTAGACTGGGA
713 TGATCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
19897286 ATGAACACTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGG
778 ATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGG
** ** * * *
19897351 CGGGATGCGCAAG-TCGGGGATTAGCCGGGTCCCCCTCTATGTGCTGCCGATCATGCTGCCGCAA
842 CGGGATGCGCAAGCT-GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-CACAA
*
19897415 CCCTCGGTCTAA
905 CCCTCGGTCTAG
* *
19897427 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA--AACGAGCGGGC-
* * * * * *
19897492 AGTGGGTGGGCTCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTTGTAG
61 AGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
19897557 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACCTGCAAATTCATA
126 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
19897622 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * * * *
19897687 TTTTCAAAACTTTTTGCGGTTTGGGATGTTTTT-AAGTTTTTTCGAAAGGATTTTTGGCCCCAAA
256 TTTTCGAAACTTTTTACGGTTCGGGAT-TTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAA
* *
19897751 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTTAGCTAAAAACTCGAAG
319 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
19897816 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
384 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
19897881 AGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
19897946 AGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCATATCATGTGCTCACA-CCCCCC-GC
514 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * * * * *
19898009 CCCCTCGATTGCCGGAACCCCAAGGCCGCCGGTAAGGTTCTTCGGCAATGCTCATGCGATGGTGC
579 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG--C-TGCGATGGCGC
*
19898074 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGG
641 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGG
*
19898139 TCC-G---G----T---C-----TG------AT-CTTAGACTGGGAATGAACTCCATATGCTTAG
706 TCCAGTCTGATCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * **
19898181 ACTGGGATTGAACTCTGTATGCCTAGGTCAACCCACAAAATGAGCATGCGGGCACTCATTCGGCC
771 ACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCC
* ** * * *
19898246 AAAGGGGCGGGATGCGCAAG-TCGGGGATCAACCTGGTCCCCCTCTACGTGCTATCGATCCTGCT
835 AGAGGGGCGGGATGCGCAAGCT-GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* *
19898310 GCTACAACCCTTGGTC-CG
899 GC-ACAACCCTCGGTCTAG
** * * * * * *
19898328 ATCAAATTTTAGACTGGGAATGAACTCCGTATGCCGAGGCCAACTGATG-AA--A-C--G-AGTG
1 -TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCG
* * *
19898386 GGTGGGCACTATGTCGACCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
65 GGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* **
19898451 GTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
19898516 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
*
19898581 CGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AA-GAGTTTTGGCCCCAAACTTGGT
260 CGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGT
*
19898644 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
19898702 TGGCTACTGG
Statistics
Matches: 4177, Mismatches: 485, Indels: 353
0.83 0.10 0.07
Matches are distributed among these distances:
852 1 0.00
853 190 0.05
854 1 0.00
855 1 0.00
856 2 0.00
857 3 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 200 0.05
863 86 0.02
864 149 0.04
865 70 0.02
866 5 0.00
869 4 0.00
870 9 0.00
871 2 0.00
872 3 0.00
874 1 0.00
875 4 0.00
877 6 0.00
878 5 0.00
880 4 0.00
881 164 0.04
882 97 0.02
883 246 0.06
884 154 0.04
885 4 0.00
886 2 0.00
887 78 0.02
888 2 0.00
889 20 0.00
890 262 0.06
891 35 0.01
892 124 0.03
893 388 0.09
894 8 0.00
895 4 0.00
896 390 0.09
897 196 0.05
898 10 0.00
899 6 0.00
901 185 0.04
902 243 0.06
903 4 0.00
904 2 0.00
905 9 0.00
906 3 0.00
907 2 0.00
908 1 0.00
909 4 0.00
910 56 0.01
913 1 0.00
914 3 0.00
916 1 0.00
919 2 0.00
921 46 0.01
922 2 0.00
923 196 0.05
925 1 0.00
927 1 0.00
930 7 0.00
931 464 0.11
932 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (916 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCGG
GTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTGCGATGGCGCCCCGACGAAG
AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCTGA
TCTTAGACTGGAATGAACTTTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCACAACCCTCG
GTCTAG
Found at i:19895532 original size:26 final size:26
Alignment explanation
Indices: 19895494--19895545 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19895484 CTGGTCTGAT
* *
19895494 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19895520 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19895546 TCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19896431 original size:26 final size:26
Alignment explanation
Indices: 19896395--19896447 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19896385 CCGATCCGAT
* *
19896395 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
19896421 CTTAGACTGGGAGTGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
19896447 C
1 C
19896448 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:19900909 original size:854 final size:851
Alignment explanation
Indices: 19899090--19903222 Score: 5022
Period size: 854 Copynumber: 4.8 Consensus size: 851
19899080 GCGCATGACG
*** *
19899090 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATACCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
19899155 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGCAGTTTCACGGCAAGACGACT
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACTGCAAGACGACT
* * * *
19899220 CGTATTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCAGGATTTTTTTAAAATTTTTCAGA
131 CGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGA-TTTTTTAAAATTTTTCGGA
** * *
19899285 AGGAGTTTTGGATCCAACCTTGGCT-GACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAA
195 AGGAGTTTTGGCCCCAAACTTGG-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
19899349 TTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGA
259 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
19899414 CAGTTTAATGGCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
324 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
19899479 ATGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCAT
389 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
19899544 ATACACACAACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
454 GTGCGCAC-ACCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * *
19899609 ATGCTCCGACGAAGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGGCCGACCCCAG-ATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATG
19899673 TGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
583 TGCTGCCGTAA-CCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
19899738 CCCACGAAACGAGCGTGCGGGCGCTAAGCCAGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGA
647 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGA
*** * * *** *
19899803 CCGGGTCCCCCTCTGTGTGCTATCGATCTTGCTACTGTAACCCTCAGTCTGGTCTGATCTTAGAC
712 CCGGGTCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * *
19899868 TAGGAATGGACTCCGTAAGCCTAAGCCAGCCGGCGAAATGA-GCTGGCGGGCGGACGGGCGGGAT
777 TAGGAATGAACTCCGTAAGCCCAAGCCAACCGACGAAATGACGTTGGCGGGTGGACGGGCGGGAT
19899932 GCGCAAGCCA
842 GCGCAAGCCA
* * * ** *
19899942 TGGATTGATAGGGCGGTAGGTGGGTTTAGGTACATCTTCATATTTCTAAATGCTAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
19900007 TATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACTGCAAGACGACT
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACTGCAAGACGACT
*
19900072 CATATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTCTCGGA
131 CGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTT-TCGGA
* ** *
19900137 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTCATATTTTTTTTGGCATGCACAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * *
19900202 TCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGATCACTTGAAAAAAGTGTCCCCATTTTAGAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
19900267 AGTTTAATGGCAATTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAAGGGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
19900332 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATA
390 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
19900397 TGCGCACACCCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTTCGACG
455 TGCGCACA--CCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
* *
19900462 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAACATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATG
** *
19900527 TGCTGCCACAACTCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
583 TGCTGCCGTAAC-CTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
19900592 CCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGGGCAAGTCGGGGATCGA
647 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGA
* * * *
19900657 CCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGCCACAACCCTTGGTCTGGTCTGATCTTAGAC
712 CCGGGTCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGAC
19900722 TAGGAATGAACTCCGTAAGCCCAAGCCAACCGACGAAATGA-GTTGGCGGGTGGACGGGCGGGAT
777 TAGGAATGAACTCCGTAAGCCCAAGCCAACCGACGAAATGACGTTGGCGGGTGGACGGGCGGGAT
19900786 GCGCAAGCCA
842 GCGCAAGCCA
* *
19900796 TGGATTGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
19900861 TATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACGGCAAGACGACT
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACTGCAAGACGACT
* * * *
19900926 CGTATTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGA
131 CGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAA-TTTTTCGGA
* * ** * *
19900991 AGGTGTTTGGGCCCCAAACTTGCCAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAACAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
19901056 TCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTCCAAAC
260 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
19901121 ACTTTAACGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
325 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
19901186 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATG
390 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * *
19901251 TACGCACACCCCCCCGTTCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTTCGACGA
455 TGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * *
19901316 TGCTTCGGTGATGGTGCCCCGACTAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
519 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
19901381 GCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGCG
584 GCTGCCGTAA-CCTCGGTCTGGTTCGATCTTAGACT-GG---G-A------ATG---A-A---C-
* * *
19901446 AATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGG
629 --T---C--CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGG
* * ** * * *
19901511 GTGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCTTCTACATGCTACCGATCCTGCTGTCACAA
687 GTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTGCCACAA
* * * * *
19901576 CCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACA
752 CCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCCCAAGCCAACCGACG--A-A
* * * *
19901641 AGCGGACGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
814 A--TGAC--GT----TGGC-GG------GT-GGAC-G-G-G-CGGGATGCGCAAGCCA
* *
19901699 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTTCATGCCAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * * *
19901764 TATGGCTTGTAAAATCATACAATGGTCTCTTACGCCTTCACGTGAAGTTTCA-TGGGAAGACGAC
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACT-GCAAGACGAC
* * * * **
19901828 TCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTTTTTCACGATTTTTCACGATTTTT
130 TCGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGG----TTCAAGATTTTTTAAAATTTTT
* * *
19901893 CACGTTTTCGAATGGAGTTTTGGCGCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
191 --CG-----GAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
19901958 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTC
248 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
19902023 CCCA-TTCTAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCGAATGCTCTTTAAGG
313 CCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
19902087 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATATAAGGGCCAA
377 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATA---GG---------GGGCCAATATAAGGGCCAA
19902152 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAAT
430 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAAT
* * * *
19902217 GCCGCCGGTCAGGTTCTCCGATGATGCTCCTGCGATGGTGCCCCAATGAAGAAAAATATGGCACC
495 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACC
* * * * *
19902282 AACACATGCCCGAGCCCAGCATGTGCTGCTGTAACCGTTGGTC-CGATCTGATCTTAGACTGGGA
560 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC-TCGGTCTGGTTC-GATCTTAGACTGGGA
* * * *
19902346 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAACC-GACCAGAGCG
623 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGG
* * * * * **
19902410 GTGGGATGCACAAGCCAGGGATCGATCGGGTCCCCTTCTGCATGCTATCGATCCTGCTGCCGTAA
687 GTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTGCCACAA
* * ** * * * *** ** * * *** *
19902475 CCCTCGGTCTGATC-CA-AAT-GA-T-GAAACG-A--GCGGGGGGGC-GGGCAGGTGAGCG--CT
752 CCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCCCAAGCCAACCGA-CGAAAT
** * * * *
19902529 -ACGTTGGCCAG-AGA--GACGGGATGTGCAAGCCG
816 GACGTTGGCGGGTGGACGGGCGGGATGCGCAAGCCA
* * **
19902561 TGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGGGTGCCAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
19902626 TATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACATGAAGTTTCA-TGGCAAGACGAC
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACT-GCAAGACGAC
* * * ** *
19902690 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATATTTTTGG
130 TCGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAAT-TTTTCGG
* * *
19902755 AAGGAGTTTTGG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGAATGCATAAAAAAA
194 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
19902819 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
259 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
19902884 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
324 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
19902949 TCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
389 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
19903014 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCTGGTCAGGTTCTCCGACA
454 GTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * *
19903079 ATGCTCCGACGATGCTGCCCTGATGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * * * *
19903144 TGCTACCATAACCATTGGTCCGATCCGTTCTTACACTGGGAATGAACTCTGTATGCCTTAGTCAA
583 TGCTGCCGTAACC-TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
19903209 CCCACGAAGCGAGC
647 CCCACGAAACGAGC
19903223 TTACGGGCAT
Statistics
Matches: 2868, Mismatches: 321, Indels: 197
0.85 0.09 0.06
Matches are distributed among these distances:
838 59 0.02
839 164 0.06
840 1 0.00
847 2 0.00
850 187 0.07
851 29 0.01
852 412 0.14
853 249 0.09
854 662 0.23
855 4 0.00
857 2 0.00
858 14 0.00
859 4 0.00
862 168 0.06
864 4 0.00
867 1 0.00
868 2 0.00
870 1 0.00
871 1 0.00
874 1 0.00
877 4 0.00
879 159 0.06
881 3 0.00
882 2 0.00
883 2 0.00
884 2 0.00
887 2 0.00
890 5 0.00
891 6 0.00
892 2 0.00
893 1 0.00
894 4 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 4 0.00
899 119 0.04
900 1 0.00
901 2 0.00
902 1 0.00
903 167 0.06
904 1 0.00
906 5 0.00
907 13 0.00
908 1 0.00
910 1 0.00
911 1 0.00
913 5 0.00
914 194 0.07
917 2 0.00
920 1 0.00
921 1 0.00
924 7 0.00
925 129 0.04
926 50 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (851 bp):
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACTGCAAGACGACT
CGTATTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGTAACCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGG
GTCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGG
AATGAACTCCGTAAGCCCAAGCCAACCGACGAAATGACGTTGGCGGGTGGACGGGCGGGATGCGC
AAGCCA
Found at i:19901448 original size:26 final size:26
Alignment explanation
Indices: 19901409--19901461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19901399 CTGGTTCGAT
*
19901409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
19901435 CTTAGATTGCGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
19901461 C
1 C
19901462 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:19901881 original size:10 final size:10
Alignment explanation
Indices: 19901868--19901900 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
19901858 CTTTTGCGGT
19901868 TTTTTCACGA
1 TTTTTCACGA
19901878 TTTTTCACGA
1 TTTTTCACGA
19901888 TTTTTCACG-
1 TTTTTCACGA
19901897 TTTT
1 TTTT
19901901 CGAATGGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.15, C:0.18, G:0.09, T:0.58
Consensus pattern (10 bp):
TTTTTCACGA
Found at i:19902138 original size:12 final size:12
Alignment explanation
Indices: 19902121--19902151 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19902111 GAGGGATAGG
19902121 GGGCCAATATAA
1 GGGCCAATATAA
19902133 GGGCCAATATAA
1 GGGCCAATATAA
19902145 GGGCCAA
1 GGGCCAA
19902152 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:19904557 original size:26 final size:26
Alignment explanation
Indices: 19904506--19904558 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19904496 CCAGTCTGAT
* *
19904506 CTTAGATTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
19904532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19904558 C
1 C
19904559 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19905436 original size:26 final size:26
Alignment explanation
Indices: 19905407--19905459 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19905397 CCGGTCTGAT
19905407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19905433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19905459 C
1 C
19905460 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19906337 original size:26 final size:26
Alignment explanation
Indices: 19906301--19906353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19906291 CTGGTCCGAT
*
19906301 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19906327 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19906353 C
1 C
19906354 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19906997 original size:878 final size:885
Alignment explanation
Indices: 19903655--19910004 Score: 6573
Period size: 904 Copynumber: 7.2 Consensus size: 885
19903645 TCTTAGCTTA
* * * *
19903655 GGAATGAATTCCATTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * *
19903720 GGGCAGGATGGGCAAGCC-AGGGATCGATTGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTG
66 GGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCG
* * * * *
19903784 CAAACCTC-GATCTGGTC-CATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-C
130 CAACCCTCGGTTC-AGTCTGA-TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * ** * * * * *
19903846 AAA-AAG-AG-TTGGCGGGCGGGCGGGCACTAC-CTCGGCCACAGAGACGAGATGCGTAAGCCAT
193 AAACGAGCGGACGGGCGGGCGGGCGGGCACTACGC-CGACCAGAGAGACGGGATGCGCAAGCCGT
* * ** *
19903907 GGATCGATAGGGTGGTAGGTGGGTTTAGCACGTCATCATATTTTTGCTTGAAAATACCATTTTTA
257 GGATCGATAGGGTGGTAGGT-GG--T-G---G-C-TC---TTCTTGCATGCCAATGCCATTTTTA
* *
19903972 TGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTG
310 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * *
19904037 TTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-GGTTTGACATTTTTTAAATTTTTTTCGAAA
375 TTTTCTATTTTTCACGATTTTTGAAACTTTTT-GCGGTTTGGGATTTTTTAAAATTTTTTCGGAA
* * * *
19904101 TGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCATAAAAAAATT
439 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
19904166 CAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
504 CAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* * * *
19904231 CTTTAATGGCAACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTC
569 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
* * * * * * *
19904296 GAGGTTTGATGAGGGATAGGGAGCCAATCTAAGGGCCAAGTACCAGCACCCGTCACATAACATGT
634 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
* * *** * * * *
19904361 GCGC-CA-CCCCCCGACCCCCCCGATCGTCGGAACCCCACTGCCATC-GG-T-T----AGATTCT
699 GCGCACACCCCCCCGGCCCCCCCGATCATCGGAATGTC-GT-CGATCAGGTTCTCCGGCGATGCT
* *
19904417 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
762 CCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * * * *
19904482 CCGCAACCCTCGGTCCAGTCTGATCTTAGATTAGGAATGAACTTCATATGCTTAGACTG
827 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * *
19904541 GGAATGAACTCCGTATGCCTAAGTCAACCAACTAAACGAGCGTGCGGGCACTCAGCAGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * * * *
19904606 GGTTGGGATGAGTAAGTCGAGGATCAGTCGGGTCCCCCTCTGCATGCT-CTCGATCCTCCTGCTG
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTAC-CGA---TCCTGCTG
* * *
19904670 CTGCAACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAGCTCCGTATGCCTAAGCCAACCGAC
127 CCGCAACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
*
19904735 GAAACGA---G-CGGGCGGGTGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG-CGT
192 GAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT
* * *
19904795 GTATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGT-GG--T-GG--C-TCTTC---TTGC-A--TGCCAATGCCATTTTT
* *
19904860 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACTC
309 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
19904925 GCTTTCTATTTTTCACGATTTTTGAAACTTTATGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
374 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAA
* * * * *
19904990 GGAGTTTT-TCCCCAAACTTGGTAGACCTGATCATTGTATTTTTGTTGGCATGCTCAAAAAATTT
439 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
19905054 CATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
504 CAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* * * * * *
19905119 CTTTAATTGCTACTGACAGCAAACCTGTAAAATCTGAAATACTCTTTAAGAGGGTGTGAGTTCTC
569 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
* * *
19905184 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCAAGT
634 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
* * * * * *
19905249 GCGCACACCCCCCCGGTCCCCCCAATC-GCTGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACG
699 GCGCACACCCCCCCGGCCCCCCCGATCATC-GG------AATGTCGTCGATCAGGTTCTCCGGCG
* * ** * * * *
19905313 ATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGACACCAGCAAATGCCCAAGCCCAGTATG
757 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
19905378 TGCTACCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
822 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * * *
19905442 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGACTAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * * * * *
19905507 GGGCGGGATGCACAAGCCGGGGATCGACCAGATCCCCTTCTACGTGCTACCGATCCTACTGCTGC
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
* * * * *
19905572 AACTCTCGGTCCAGT-TCGATCTTAGATTGGGAATGAACTCCGTATGCCTAGGCCAACTGATGGA
131 AACCCTCGGTTCAGTCT-GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * *
19905636 ACGA----ACGGACGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGACGTGGA
195 ACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
19905697 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGT-GG--T-GG--C-TCTTC------TTGCATGCCAATGCCATTTTTATG
* * * *
19905762 GCTTGTAAATTCATACAATGGTCCTTTAAGCCTTGACTTGAAGTTTCATGGCAAGACGACTCATT
312 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
19905827 TTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGCATTTTTTAAAATTTTTTCAGAATGA
377 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
19905892 GTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCATAAAAATATTCAG
442 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
19905957 CTAAAAACTCGGAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
507 CTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
* *
19906022 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
572 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
*
19906087 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCTCACATCATGTGCG
637 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCG
* * * *
19906152 CCCACCCCCCCGACCCCCCCAATCATCGGAATGTCGTCGATCAGGTTCTCCGGCAATGCTCCGGC
702 CACACCCCCCCGGCCCCCCCGATCATCGGAATGTCGTCGATCAGGTTCTCCGGCGATGCTCCGGC
** * *
19906217 GATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTA
767 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTA
* * * *
19906282 ACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTG
832 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * *
19906336 GGAATGAACTTCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
19906401 GGGTGGGATGCGCAAGCCGAGAATCGGCCGGGTCCCCCTCTGCAAGCTACCGATCCTGCTGCCAC
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
* * *
19906466 AACCCAT-GGTTCGGT-TCAATCTTAGATTGGGAATGCACTCCGTATGCCTAAGCCAACCGATGA
131 AACCC-TCGGTTCAGTCT-GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * * * * *
19906529 AAGGAGCGGACGGGCGGACGGGCAGGCACTACGCTGGCCAGAG-GATGGGATGTGCAAGCCGTGG
194 AACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
19906593 ATTGATAAGGTGGTAGGT-G-GG-T-TTC-TGCATGCCAATGCCATTTTTATGG-TGGTAAATTC
259 ATCGATAGGGTGGTAGGTGGTGGCTCTTCTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
19906652 ATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTA
324 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
19906717 CGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
389 CGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
19906782 AACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCA-AAAAAATATTCAGCTAAAAACTCG
454 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCG
* * * *
19906846 AAGCATACAATATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACT
518 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
* * * *
19906911 GACAGCAAACCTGCAAAATCTGAAATG-TACTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAG
583 GGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
*
19906975 GGATAGGGGGCCAATATAAGGGCCAAGTA-TCAGCACCCATCGCACATCATGTGTGCACACCCCC
647 GGATAGGGGGCCAATATAAGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
19907039 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-CCAGTCAGGTTCTCCGGCGATGCTCCGGTGA
711 CCGGCCCCCCCGATCATCGG------AATGTCGTCGA-TCAGGTTCTCCGGCGATGCTCCGGCGA
* * **
19907103 TGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGTCGTAAC
769 TGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAC
** *
19907168 CCTCTTTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATACTTAGACTG
834 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * *
19907220 GGAATGAACCCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * *
19907285 GGGCGGGATGCGCAGGCCG-GAGATCGATCGGGTCCCCCTTTGCGTGCTGCCGATCCTGTTGCTG
66 GGGCGGGATGCGCAAGCCGAG-GATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCG
* * * * *
19907349 CAACCCTCGG-TCTGGTCTGGTCTTAGATTAGGAATGAACTCCATATGCCTAAGCCAACCGACGA
130 CAACCCTCGGTTC-AGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* *
19907413 AACGAGCGGACGGGCGGGCGGGCTGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGG
194 AACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
*
19907478 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCATGCTAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGT-GG--T-GG-----C-TC-T-TCT-TGCATGCCAATGCCATTTTTAT
*
19907543 GGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
311 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
19907608 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTTGGGATTTTTAAAAAATTTTTTTGAAAG
376 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT-TAAAATTTTTTCGGAAG
* * * * *
19907673 GCGTTTTGGCCCCATACATGCTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTC
440 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
19907738 AGCTAAAAACTAGAAGTGTACAAGATTTCGTGACCATTTG--AAAAGTGTCTCCATTTCAGACAC
505 AGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
19907801 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
570 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
* * * *
19907866 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGGACCCATAGCACATCATGTG
635 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTG
* * * * * *
19907931 CGCACACTCCCCTCGGCTCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
700 CGCACAC-CCCCCCGGCCCCCCCGATCATCGG------AATGTCGTCGATCAGGTTCTCCGGCGA
* **
19907996 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
758 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
19908061 GCTACCATAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTCAGACTG
823 GCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * *
19908124 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * *
19908189 GGGCAGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCTTCTTCATGCTACCGATCCTGCTACCAC
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
*
19908254 AA-CC-C---TCAG--T--TC---GGTT-----TG-A-T-C---T---T-AG---A-C---GAAA
131 AACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * * * * * *
19908285 CGAGCGGGCGGGTGGGCGGGAGGGCATTACGTCGGCCAGAGAGACGTGATGCGCAAGCCGTGCAT
196 CGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
19908350 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGT-GG--T-GG--C-TCTTC---TTGC-A--TGCCAATGCCATTTTTATGG
* *
19908415 CTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
313 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
19908480 TCTATTTTTCATGTTTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC---AGGAG
378 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * * *
19908542 TTTTGACCCCAAACTTGGTATACGTCATCCTTGAATTTTTTTTGTCATGCACAAAAAAATTCAGC
443 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
19908607 TAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTACACACTTT
508 TAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
* *
19908672 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAA-GGGGTGTGAGTTCTTGTGG
573 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* * *
19908736 TTTGATGCGGGATAGGGGGCCAATATAAGGGCCAAATACTAGCACCCATCGCATATCATGTGCGC
638 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGC
* * * *
19908801 ACA-CCCCCCGGCCCCCCCGATCACCAGAACCCTAGTGCCGTCGGTCAGGTTCTCCGGTGATGCT
703 ACACCCCCCCGGCCCCCCCGATCATCGGAA---T-GT--CGTCGATCAGGTTCTCCGGCGATGCT
* * * * *
19908865 CCGACGATGGTGCCCCGACAAAGAAAAATGTGACACCAACACATG-CCGAAGCCCTGCATGTG-T
762 CCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG-AGCCCAGCATGTGCT
* *
19908928 CATCGTAA-CC-C--T-C-G---G----T---C------TG-A-TCCA-AT-CTTAGACCG
826 -ACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * * * *
19908963 AGAATGAACTCCGTATGCCTAAGTCAACCCATGAATCGAGCGTGCAGGTGCTTAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * ** **
19909028 GGGCGGGATGCGTAAGTCGAGGATCGACCAGGTCCTCCTCTGCATGCTATTGATCCTGCCACCGC
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
* * * *
19909093 TACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGATGAAA
131 AACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
*
19909158 CGAGC--A------GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCAGTGGAT
196 CGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** * *
19909215 CGATAGGGTGGTAGGCGGTTTAGGCACATCTTCATATTTCTGTGTGCCATTGCCATTTTTATGTC
261 CGATAGGGTGGTAGGTGG--T-GG--C-TCTTC-----T-TGCATGCCAATGCCATTTTTATGGC
* *
19909280 TTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAAGCTTCATGGCAAGACGACTCGTTT
314 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTTT
*
19909345 T-TATTTTTCACTGTTTTTTGAAACTTTTTTGCGGTTT-GG-TTTTTTAAAA-TTTTTCATGG--
378 TCTATTTTTCAC-GATTTTTGAAAC-TTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC--GGAA
* * ** * *
19909404 GGAGTTTT-GACCC-AA-TTGGTATAACGT-ATCCTTCAATTTTTTTTGTCATGCACAAAAAAAT
439 GGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
19909465 TCAG-T-AAAATTTGAACAGTGTA-AAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTCTAG
503 TCAGCTAAAAACTCG-A-AGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * * *
19909526 ACACTTTAATGGCTA-TTGCAGGCAAACCTGTAAAAT-TCAAATGCTCTTCCAAAGGGGT-AGAG
566 ACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAG
* * * * *
19909588 TTCTT-ATGTTTGATGCGGGATA--GGGCCAATATAAGGGCAAAATACT-GCA--CATC-CATAT
629 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
* * * *
19909646 CAATGTGCGCACA----CCCGG-CCCCCCG-TCAACAGAAACCTAGT-GCCG-TC-GG---T-CA
694 C-ATGTGCGCACACCCCCCCGGCCCCCCCGATCATC-GGAA--T-GTCGTCGATCAGGTTCTCCG
* * * * ** *
19909698 G-G-TTCTCCGGGGATCGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGTACTAGCCCAGC
754 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
19909761 ATGTGGTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
819 ATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
19909826 TG
884 TG
*
19909828 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * ** **** *
19909893 GGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGTGTGCTGTTAATCCTGCTGCTGC
66 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
** * * * *
19909958 AACCCTTTG-TCCGATTTGATCTTAGACTGGGAATGAACTCCATATGC
131 AACCCTCGGTTCAG-TCTGATCTTAGATTGGGAATGAACTCCGTATGC
19910005 TTACAATGGG
Statistics
Matches: 4692, Mismatches: 586, Indels: 393
0.83 0.10 0.07
Matches are distributed among these distances:
839 173 0.04
840 9 0.00
841 8 0.00
842 2 0.00
843 3 0.00
844 4 0.00
845 3 0.00
846 3 0.00
847 3 0.00
848 3 0.00
849 1 0.00
850 10 0.00
851 11 0.00
852 7 0.00
854 6 0.00
855 16 0.00
856 3 0.00
857 4 0.00
858 24 0.01
859 4 0.00
860 32 0.01
861 78 0.02
862 22 0.00
863 59 0.01
864 107 0.02
865 356 0.08
866 118 0.03
867 85 0.02
868 68 0.01
869 11 0.00
870 207 0.04
873 10 0.00
874 1 0.00
877 9 0.00
878 375 0.08
879 24 0.01
881 1 0.00
883 8 0.00
884 332 0.07
885 39 0.01
886 107 0.02
887 5 0.00
888 258 0.05
889 241 0.05
890 26 0.01
891 5 0.00
892 3 0.00
894 307 0.07
895 7 0.00
896 4 0.00
897 37 0.01
898 143 0.03
899 180 0.04
900 259 0.06
901 208 0.04
902 6 0.00
903 170 0.04
904 379 0.08
905 102 0.02
906 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGC
AACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
CGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGTGGCTCTTCTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
CGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
CCCCCCGATCATCGGAATGTCGTCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT
CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
Found at i:19908128 original size:26 final size:26
Alignment explanation
Indices: 19908092--19908141 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19908082 GTCCGATCTT
19908092 AGACTAGGAATGAACTCCATATGCTC
1 AGACTAGGAATGAACTCCATATGCTC
* *
19908118 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCATATGC
19908142 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCATATGCTC
Found at i:19909822 original size:26 final size:26
Alignment explanation
Indices: 19909793--19909845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909783 TCGGTCCGAT
*
19909793 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19909819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19909845 C
1 C
19909846 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19909989 original size:865 final size:876
Alignment explanation
Indices: 19908298--19910004 Score: 1702
Period size: 865 Copynumber: 2.0 Consensus size: 876
19908288 GCGGGCGGGT
* * * * * *
19908298 GGGCGGGAGGGCATTACGTCGGCCAGAGAGACGTGATGCGCAAGCCGTGCATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTA
* *
19908363 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
19908428 AGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
19908493 TTTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT--TCAGGAGTTTTGACCCCAAAC
196 ATTTTTGAAACTTTTTGCGGTT-TGGATTTTTTAAAATTTTTCATGAGGAGTTTTG-CCCCAAAC
* * * * * * *
19908556 TTGGTATACGTCATCCTTGAATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAATTTGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
19908621 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTACACACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACTGGCA
* * *
19908686 GCAAACCTGTAAAATCTCAAATGCTCTTCAA-GGGGTGTGAGTTCTTGTGGTTTGATGCGGGATA
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-AGGTTTGATGAGGGATA
* * *
19908750 GGGGGCCAATATAAGGGCCAAATACTAGCACCCATCGCATATCATGTGCGCACACCCCCCGGCCC
452 -GGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACA--CCCCGG-CC
* * * * *
19908815 CCCCGATCACCAGAACCCTAGTGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
512 CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---G--G---CGGCGATGGTGCCC
* * * * *
19908880 CGACAAAGAAAAATGTGACACCAACACATG-CCGAAGCCCTGCATGTG-TCATCGTAA-CC-C--
569 CGACGAAGAAAAATGTGGCACCAGCACATGCCCG-AGCCCAGCATGTGCT-ACCGTAACCCTCGT
* *
19908939 TC-G---G----T---C------TG-A-TCCA-AT-CTTAGACCGAGAATGAACTCCGTATGCCT
632 TCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
19908983 AAGTCAACCCATGAATCGAGCGTGCAGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGA
697 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** ** * * * *
19909048 GGATCGACCAGGTCCTCCTCTGCATGCTATTGATCCTGCCACCGCTACCCTCGGTTCGGTCTGAT
762 GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTTTGAT
* * *
19909113 CTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGATGAAACGAGC
827 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* *
19909163 AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTA
* ** * * *
19909228 GG-CGGTTTAGGCACATCTTCATATTTCTGTGTGCCATTGCCATTTTTATGTCTTGTCAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
19909292 ACAATGGTCCCTTAAGCCTTCACGTGAAAGCTTCATGGCAAGACGACTCGTTTT-TATTTTTCAC
131 ACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
19909356 TGTTTTTTGAAACTTTTTTGCGGTTTGG-TTTTTTAAAATTTTTCATGGGGAGTTTTGACCC-AA
195 -GATTTTTGAAAC-TTTTTGCGGTTTGGATTTTTTAAAATTTTTCATGAGGAGTTTTGCCCCAAA
* ** * * * *
19909419 -TTGGTATAACGT-ATCCTTCAATTTTTTTTGTCATGCACAAAAAAATTCAG-T-AAAATTTGAA
258 CTTGGTA-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-A
19909480 CAGTGTA-AAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTA-T
321 -AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACT
* * * * * *
19909542 TGCAGGCAAACCTGTAAAAT-TCAAATGCTCTTCCAAAGGGGT-AGAGTTCTTATGTTTGATGCG
384 GGCA-GCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTTAGGTTTGATGAG
* * * *
19909605 GGATA-GGGCCAATATAAGGGCAAAATA-CTGCA-CATC-CATATCAATGTGCGCACA-CCCGGC
447 GGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATC-ATGTGCGCACACCCCGGC
* * * * * * *
19909665 CCCCCG-TCAACAGAAACCTAGTGCCGTCGGTCAGGTTCTCC-G-GG-GATCGTGCCCCGATGAA
511 CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGGCGATGGTGCCCCGACGAA
** * * *
19909726 GAAAAATGTGGCACCAGCACATGTACTAGCCCAGCATGTGGTACCGCAACCCTCAGTTCGGTCCG
576 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC-GTTCGGTCCG
* *
19909791 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
640 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
19909856 CCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC-AG
705 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-
* **** ** * *
19909920 TCGGGTCCCCCTCTGTGTGCTGTTAATCCTGCTGCTGCAACCCTTTGTCCGATTTGATCTTAGAC
769 TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTTTGATCTTAGAT
*
19909985 TGGGAATGAACTCCATATGC
834 TGGGAATGAACTCCGTATGC
19910005 TTACAATGGG
Statistics
Matches: 726, Mismatches: 75, Indels: 82
0.82 0.08 0.09
Matches are distributed among these distances:
839 52 0.07
840 5 0.01
841 1 0.00
844 3 0.00
845 1 0.00
848 1 0.00
850 33 0.05
851 7 0.01
852 6 0.01
854 6 0.01
855 16 0.02
857 3 0.00
858 21 0.03
860 31 0.04
861 77 0.11
862 20 0.03
863 51 0.07
864 113 0.16
865 258 0.36
866 21 0.03
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (876 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGCGGTTTGGATTTTTTAAAATTTTTCATGAGGAGTTTTGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAGGTTTGATGAGGGATAGGGG
CCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCGGCCCCCCGATCA
TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGGCGATGGTGCCCCGACGAAGAAAAATGTG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGTTCGGTCCGATCTTAGACTG
GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
CTGCGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTTTGATCTTAGATTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGC
Found at i:19910126 original size:185 final size:185
Alignment explanation
Indices: 19909769--19910181 Score: 565
Period size: 185 Copynumber: 2.2 Consensus size: 185
19909759 GCATGTGGTA
* * * * * * *
19909769 CCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTACAATGGGAATG
* * *
19909834 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * * * **
19909899 GATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGTGTGCTGTTAATCCTGCTG
131 GATGCACAAGCCGGGGATCAGACGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
* ** **
19909954 CTGCAACCCTTTGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTACAATGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTACAATGGGAATG
* *
19910019 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGCCGGCCCGAGGGGCAG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * * *
19910084 GATGCACAAGCCGGGGTTCGGACGGGTCGCCCTCTATGTGCTGCCAATCTTGCTG
131 GATGCACAAGCCGGGGATCAGACGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
* *
19910139 CCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACT
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
19910182 TCGTAAGCCT
Statistics
Matches: 195, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
185 195 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (185 bp):
CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTACAATGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCGGGCGCTCAGCCGGCCAGAGGGGCAG
GATGCACAAGCCGGGGATCAGACGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
Found at i:19911872 original size:26 final size:26
Alignment explanation
Indices: 19911843--19911898 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19911833 CCGGTCCGAT
*
19911843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
19911869 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19911895 CTTA
1 CTTA
19911899 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19912775 original size:26 final size:26
Alignment explanation
Indices: 19912746--19912798 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19912736 CCGGTCCTAT
19912746 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19912772 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19912798 C
1 C
19912799 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19913308 original size:901 final size:895
Alignment explanation
Indices: 19910489--19914735 Score: 5642
Period size: 901 Copynumber: 4.8 Consensus size: 895
19910479 AATGCATAGC
* ** *
19910489 TTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGGAA
1 TTTTT-TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
19910554 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTGTGGCATGCAC-AAAAAATT
65 GGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
19910618 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATT-AGAC
130 AAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGAC
19910682 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
194 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
* *
19910747 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATG
258 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
19910812 TGCACACACCCCCC-GGCCCCTGATCGTCGAAACCCTAATGCCGCTGGTCAGGTTCTCCGGCGAA
323 TGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * *
19910876 GCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCATCAGCACATGCGCGAGCCAAGCATGTG
388 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
19910941 ATGCCGCAACCC---T-CGG-------T---CT--G---G---TCCG-AT-CTTAGACTGGGAAT
453 CTGCCGCAACCCTGGTCCGGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
19910982 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTG
518 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
** * * * * *
19911047 GGAT-CTGCAAGCCAAAGATCGGCCGAGTCTCCTTCTACGTGCTGTCAATCCTGCTGCCGCAACC
583 GGATGC-GCAAGCC-GGGATCGGTCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGCAACC
* *
19911111 CTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
646 CTCGG-CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
19911176 C--GGGCGTGCGGGCGGGCACTACGCCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
710 CGGGGGCGGGCGGGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
19911239 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAGCCATTTTTTATGGCTTG
774 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTATGGCTTG
* * *
19911304 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGGAAGACTACTCG
838 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
19911362 TTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTGGGGATTTTTTAAAATTTTTTTGGAAG
1 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
19911427 GAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTCGTATTTTTTTTGCCATGCACAAAAAAATTT
66 GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
* *
19911492 AGCTAAAAACTTGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
131 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
19911557 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCG
196 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCG
* * *
19911622 AGGTTTGATGAGGAATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
19911687 CGCACACCTCCCCGGAG-CCCCCGATCGTCGGAACCCCAATGCCGCCCGTCAGGTTCTCCGACGA
325 CGCACACC-CCCC--AGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * *
19911751 TGCTCCGACGATGGTGCCCCGGGGAAGAAAAATACGACACCAGCACAT-CCCGAGCCCAGCATGT
387 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
19911815 GCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGA
452 GCTGCCGCAACCC-TGGTCCGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
19911880 AATGAACTCTGTATGCTTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
515 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * *
19911945 GCGAGATGCGCAAGCCGAAGATCGGTCGGGTCCCCCTTTGCATGCTG-CTGATGCTGCTATTGCA
580 GCGGGATGCGCAAGCCG-GGATCGGTCGAGTCCCCCTCTACGTGCTGTC-GATCCTGCTGTCGCA
** * * *
19912009 ACCCTCAGTTCGGTCCGATCTTAGATTGGGATTAAACTCCGTATGCCTAAGCCAACCGACGAAAC
643 ACCCTC-GGCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
19912074 GAGCGACAGGCCGGGAGGGCGAGCACGACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATC
707 GAGCG--GGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
**
19912139 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
770 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
19912204 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCG
835 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
19912265 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGAAAG
1 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* ** * * * *
19912330 GAGATTTCACCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAATTTC
66 GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
* * *
19912395 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAATGTCCCCATTTCAGACTC
131 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
19912460 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGTGTGAGTTCTAGA
196 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGA
* * *
19912525 GGTTTGATGAGAGATA-GGAGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** * * * *
19912589 GCACACCCCCCAGCCCCCTCGTTC-TCTGGCGATGCTCAATGCCACCGGTCAGGTTCTCTGGCGA
326 GCACACCCCCCAGCCCCC-CGATCGTC--G-GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* *
19912653 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC-AACCCGAGCATG
387 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATG
**
19912717 TGCTGTTGCAACCCTTGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
451 TGCTGCCGCAACCC-TGGTCCGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
19912782 GAATGAACTCCGTATGCCTAAGTTAACCCACGAAAGGAGTGTACGGGCGCACAGCCGGCCAAAGG
514 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * *
19912847 GGCAGGATGCGCAAGCCAGGGATCGGTCGAGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCA
579 GGCGGGATGCGCAAGCC-GGGATCGGTCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGCA
* * * * * *
19912912 ACACTCGGCCAGTCTGATCTTAGACTGGGAATGAACTCCATATTCCTAAGCGAACCGACGAAACG
643 ACCCTCGGCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
19912977 AGCGGTTGGGTGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGTGGAAGCCGTGGATCG
708 AGCGG--GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
19913042 ATAGGGTGGTAGGTGAGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
771 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
19913107 TGT-AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
836 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
19913166 TTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
1 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
*
19913231 AAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
66 GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
* * *
19913296 AGCTAAAAACTCGAAATGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
131 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
19913361 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGCGAGTTCTCG
196 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCG
* *
19913426 AGGTTTGATGAGGGATAGGGGGCCAATATAATTGGCCAAGTACCAGCAACCATCGCACATCATGT
260 AGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
19913491 GCACACACCCCCCCGGGCTCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
324 GCGCACA-CCCCCC-AGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
** * * * *
19913556 ATGCTCCGTTGATGGTTCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
386 ATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
19913621 TGCTGCCACAA--C----CC--T-CA----A-TCT-GG--T---CT--G-AT-CTTAGACTAGGA
451 TGCTGCCGCAACCCTGGTCCGGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
19913662 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCC-GCCAGAGGGG
516 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
19913726 CGGGATACACAAGCTGGGGATCGG-CCAGGTCCCCCCTCTGCGTGCTGCCGATCCTACTGTCGCA
581 CGGGATGCGCAAGC-CGGGATCGGTCGA-GT-CCCCCTCTACGTGCTGTCGATCCTGCTGTCGCA
* * *
19913790 ACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAAC
643 ACCCTCGG-CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
19913855 GAGC--GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAA
707 GAGCGGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
19913918 TAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
772 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
19913983 GTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCG
837 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
19914042 TTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
1 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
19914107 AAATTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
66 GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
* * *
19914172 AGCTAAAAACTCGAAATGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
131 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
19914237 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
196 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
* *
19914302 AGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
19914367 CGCACACCCCTCCGGCACCCCCGATCATCGGAACCCCAATGCTGCCGGACAGGTTCTCCGATGAT
325 CGCACACCCC-CCAGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* ** * * * * * * *
19914432 GCTCCGGCAACAGTGCCCCGACGAAGAAAAATGTGGCACCGGCATATACCCGAGCCCAGTACGTG
388 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
19914497 CTGCCAAAACCCTCGG-CTCGGTCCGATCTTAGAATGGGAATGAACTCCATATG-TGTAGACTGG
453 CTGCCGCAACCCT-GGTC-CGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCT-TAGACTGG
*
19914560 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG-CAGAGG
514 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *
19914624 GGCGGGAGTGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCAC
579 GGCGGGA-TGCGCAAGCCG-GGATCGGTCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGC
* * * *
19914689 AACCCTCGATCCAGTCCGATCTTAGATTAGGAATGAACTCCGTATGC
642 AACCCTCG-GCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
19914736 TTAGACTGGG
Statistics
Matches: 2950, Mismatches: 325, Indels: 171
0.86 0.09 0.05
Matches are distributed among these distances:
872 109 0.04
873 198 0.07
874 110 0.04
875 180 0.06
876 422 0.14
877 32 0.01
878 93 0.03
879 56 0.02
880 5 0.00
881 1 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 2 0.00
887 2 0.00
888 3 0.00
889 2 0.00
890 1 0.00
891 4 0.00
893 3 0.00
894 1 0.00
895 1 0.00
896 3 0.00
897 2 0.00
898 2 0.00
899 13 0.00
900 154 0.05
901 519 0.18
902 298 0.10
903 481 0.16
904 210 0.07
905 28 0.01
906 6 0.00
907 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTA
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
CCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTGGTCCGGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGATCGGTCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGG
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
Found at i:19914562 original size:26 final size:26
Alignment explanation
Indices: 19914526--19914575 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19914516 GGTCCGATCT
19914526 TAGAATGGGAATGAACTCCATATGTG
1 TAGAATGGGAATGAACTCCATATGTG
* *
19914552 TAGACTGGGAATGAACTCCGTATG
1 TAGAATGGGAATGAACTCCATATG
19914576 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCATATGTG
Found at i:19914738 original size:26 final size:26
Alignment explanation
Indices: 19914709--19914761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19914699 CCAGTCCGAT
* *
19914709 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
19914735 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
19914761 C
1 C
19914762 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:19914823 original size:185 final size:185
Alignment explanation
Indices: 19914495--19914920 Score: 633
Period size: 185 Copynumber: 2.3 Consensus size: 185
19914485 GCCCAGTACG
* * * *
19914495 TGCTGCCAAAACCCTCGGCTCGGTCCGATCTTAGAATGGGAATGAACTCCATATG-TGTAGACTG
1 TGCTGCCACAACCCTC-GATCCGTCCGATCTTAGAATGGGAATGAACTCCGTATGCTGTAGACTG
*
19914559 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCAGAGG
65 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCAGAGG
* *
19914624 GGCGGGAGTGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
130 GGCGGGAGTGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCAATCC
* * *
19914680 TGCTGTCACAACCCTCGATCCAGTCCGATCTTAGATTAGGAATGAACTCCGTATGCT-TAGACTG
1 TGCTGCCACAACCCTCGATCC-GTCCGATCTTAGAATGGGAATGAACTCCGTATGCTGTAGACTG
19914744 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
65 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG-CAGAG
* * **
19914809 GGGTGGGA-TGCGCAAGCCGAGGATCGATCGGGTCCCCCTTTGTGTGCTGTCAATCC
129 GGGCGGGAGTGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCAATCC
* * * *
19914865 TGCTGCCACAAGCCTCGGTCCGATCTGATCTTAGAATGGGAATGAACTCTGTATGC
1 TGCTGCCACAACCCTCGATCCG-TCCGATCTTAGAATGGGAATGAACTCCGTATGC
19914921 CTAAGCCAAC
Statistics
Matches: 216, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
184 4 0.02
185 199 0.92
186 13 0.06
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (185 bp):
TGCTGCCACAACCCTCGATCCGTCCGATCTTAGAATGGGAATGAACTCCGTATGCTGTAGACTGG
GAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCAGAGGG
GCGGGAGTGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCAATCC
Found at i:19915620 original size:26 final size:26
Alignment explanation
Indices: 19915591--19915642 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19915581 TCGGTCCGAT
19915591 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
19915617 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19915643 ATTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19917386 original size:26 final size:26
Alignment explanation
Indices: 19917357--19917409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19917347 CTGGTTCGAT
* *
19917357 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19917383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19917409 C
1 C
19917410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19918997 original size:26 final size:26
Alignment explanation
Indices: 19918961--19919013 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19918951 TCGATCTGAT
19918961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19918987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19919013 C
1 C
19919014 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19919061 original size:719 final size:712
Alignment explanation
Indices: 19917613--19918939 Score: 1959
Period size: 719 Copynumber: 1.9 Consensus size: 712
19917603 GGGCACTACC
19917613 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
19917678 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
19917743 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTAC
131 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTAC
* *
19917808 GATTCGAGATTTTTTAAAATTTTTTCGTAAGGAGTTTTTGAACCAAACTTGGTAGACGTGATCCT
196 GATTCGAGATTTTTTAAAATTTTTTCGTAAGGAGTTTTTCAACCAAACATGGTAGACGTGATCCT
* *
19917873 TGTATTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCA
261 TGTATTTTTTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
19917938 TTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGAAACCTGTAAAATCTCAA
326 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAATAGCAGAAACCTGTAAAATCTCAA
*
19918003 ATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
19918068 AGTACCAGCACCCATCATGCATTATGTGCGTACACCCCCCGACCCGCCGATCGTCGGAACCCCAA
456 AGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCCGACCCGCCGATCGTCGAAACCCCAA
* * ** *
19918133 TGCCATCGATCAGGTTCTCCGGCGATGGTGCCCTGATGAAGAAAAATGTGGCACCAGCAAATGTC
521 TGCCACCGATCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCAAATGCC
* ** * * * * *
19918198 GGAGCCCCCTCTGTGTGCTACCGATCCTACTACCATATCGGGGATCGGTCGGGTCCCCCTCTGCG
586 CGAGCCCCAGCTATGTGCTACCG---CTAC-ACCA-ATC-GGGATCGATCGGATCCCACACTGCG
* * * * * *
19918263 TGCTACCGATCCTACTGCCATAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTA
645 TGCTACCGATCCTACTGCAATAA-CCTCAGTATGGCCTAATC-TAGACCACGAA-GAACTCCGTA
19918328 TGCCTA
707 TGCCTA
* *
19918334 --AGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
19918397 TTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
19918462 TTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGC
131 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTAC
* * * *
19918527 GGTTTGGGATTTCTTT-AAATTTTTTCAG-AAGGAG-TTTTCACCCAAACATGGTAGACGTGATC
196 GATTCGAGATTT-TTTAAAATTTTTTC-GTAAGGAGTTTTTCAACCAAACATGGTAGACGTGATC
19918589 CTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
259 CTTGTATTTTT-TTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
19918654 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTAGCAGCAAACCTGTAAAAT
322 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAATAGCAG-AAACCTGTAAAAT
* * **
19918719 CTCAAATGCTCTTT-AAGGGAGTGTGAGTTGTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
386 CTCAAATGCTCTTTAAAGAG-GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
19918783 GGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCTGCCCCTCCGATCGTCGAAA
450 GGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCCGACCCGCCGATCGTCGAAA
*** * *
19918848 CCCCAATGTTGCCGGTCAGGTTCTCCGGGGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCA
515 CCCCAATGCCACCGATCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCA
*
19918913 CATGCCCGAG-CCCAGC-ATGTGCTACCG
580 AATGCCCGAGCCCCAGCTATGTGCTACCG
19918940 TAACCCTCGG
Statistics
Matches: 554, Mismatches: 46, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
718 36 0.06
719 231 0.42
720 98 0.18
721 189 0.34
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (712 bp):
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTAC
GATTCGAGATTTTTTAAAATTTTTTCGTAAGGAGTTTTTCAACCAAACATGGTAGACGTGATCCT
TGTATTTTTTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAATAGCAGAAACCTGTAAAATCTCAA
ATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCCGACCCGCCGATCGTCGAAACCCCAA
TGCCACCGATCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCAAATGCC
CGAGCCCCAGCTATGTGCTACCGCTACACCAATCGGGATCGATCGGATCCCACACTGCGTGCTAC
CGATCCTACTGCAATAACCTCAGTATGGCCTAATCTAGACCACGAAGAACTCCGTATGCCTA
Found at i:19919867 original size:26 final size:26
Alignment explanation
Indices: 19919831--19919881 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19919821 GGTCTGATCA
*
19919831 TAGACTGGGAATGACCTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
19919857 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19919882 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:19920755 original size:26 final size:26
Alignment explanation
Indices: 19920726--19920778 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19920716 TCGGTCCGAT
19920726 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19920752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19920778 C
1 C
19920779 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19921178 original size:906 final size:901
Alignment explanation
Indices: 19918335--19926271 Score: 9663
Period size: 906 Copynumber: 9.0 Consensus size: 901
19918325 GTATGCCTAA
*
19918335 GCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
19918400 ATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
19918465 ACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* ** *
19918530 TTGGGATTTCTTT-AAATTTTTTCAGAAGGAGTTTTCACCCAAACATGGTAGACGTGATCCTTGT
196 TCGGGATTT-TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGT
*
19918594 ATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
19918659 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTAGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
19918724 ATGCTCTTTAAGGGAGTGTGAGTTGTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*** * * * * *
19918789 AGTACCAGCACCCATCATGCATCATGTGCGCACA--CCCCCTGCCCCTCCGATCGTCGAAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCT
** * *
19918852 AATGTTGCCGGTCAGGTTCT-C--CG--G----G--GATGGTGCCCCGACAAAGAAAAATGTGGC
520 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGC
* * * *
19918906 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTGG
585 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
*
19918971 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAG
650 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * **
19919036 CGTTCGGGCACTCAGCCGGCCAGAGAAGCGGGATGCGCAAGCC--GG---GGA----------TC
715 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTC
* * * ** * * * *
19919086 -----G--GCCAATCCTACTACCGCAACCCTTGGTCCGGTCCGATCTTTGACTAGGAATGAACTC
780 TGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * ** *
19919144 CGTATGCCTAAGCCAATCGACAAAACGAGCGAACGGGCGGGC--GGGCACTACGTCG
845 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCG
* * **
19919199 GCCAAAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACATGGGGTTT-GGCACATCTT
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGGTTTAGGCACATCTT
* * * *
19919263 CATATTTTTGCGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCCTT
65 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
** *
19919328 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGG
* * * *
19919393 TGCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCATACTTGGTAGAGGTGATCCTTGT
195 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
19919458 ATTTTTTTTTAGCATGCACAATAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCA
260 A-TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
19919523 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * * * *
19919588 AATGCACTTTGAGGGCGTGCGAGTTCTCGAGGTTTTATGAGGGATAAGGGGCCAATATAAGGGCA
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *** *
19919653 AAGTACTAGCACCCATCGCATATCATGTGCGCACACCCCCTCGGCCCCCCTCGATTGCCGAAAAC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-CGATCATCG-GAAC
* ** * * ** * **
19919718 CC-GATGCCATCGATCAAGTT-T-------T-CT--GGGGATGATGCCCCGACGAAGAAAAATGC
517 CCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAT
* ** * *
19919771 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGCCCGGTCTGATCATAGAC
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAC
* *
19919836 TGGGAATGACCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
647 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
19919901 GAACGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGAACGGGTCCCC
712 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCC
** * ** * * ** * * *
19919966 CTCTACGTGATGCTGATCCTGCTACCATAACCCTTGGTCTAGCCCGATCTTAGACTGGGAATGAA
777 CTCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
* * *
19920031 CTCCGTATGCCTAAGCCAATCGATGAAACGA----GTGGGCGGGC--GGGCACTACGCCG
842 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCG
* * * * *
19920085 GCCTGACAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGTTGGGTTTTGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
19920150 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
19920215 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* * *
19920280 TCGGGATTTTTTAAAATTTTTTCATAAGGATTTTTCGTCCCAAACTTGGTAGACGTGATCCTTGT
196 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGT
** ** *
19920345 ATTTTTGTCAGTGTGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
19920410 TTGAAAAAAGTGTCCCCAATTCAGACACTTTAATCGCTACTAGCAGCAAACCTGAAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
19920475 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
19920540 AGTACCAGTACCCATCTCACATCATGTGCGCACACACCCCCCGGCCCACTCGATCGTCGGAACCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCATCGGAACCC
* * ** * * ** *
19920605 TAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGTTGATAGTGCCCTGGGGAAGAAACATATGG
519 TAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
* * *
19920670 CACCAGAACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
19920735 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
649 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * ***
19920800 ACATGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGGATCACCCGGGTCCCCC
714 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGACGGGTCCCCC
* * *
19920865 TCTGCGTGCTGTCATTCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
778 TCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
* *
19920930 TCCGTATGCCCAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGTCG
843 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG--GGCACTACGCCG
* * *
19920991 GCCAGAAAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19921056 ATATTTCTGCGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
19921121 ACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* * *
19921186 TTGAGATTTTTTAAAATATTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TCGGGATTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTG
* * *
19921250 TATTTTTGTTGGCATGCAAAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGGTTTTGTGACCA
259 TATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * * *
19921315 TTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATAGCTACTTGCAGCAAACCTGTAAAATCTTA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * *
19921380 AATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGTCAATATAAGGGGC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
19921445 ACA-TACCAGCACCCATTGCACATCATGTGCGCACACACCCCTGACCCCCCCGATCACCGGAACC
454 A-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACC
* * * * * *
19921509 CTATTGCCGCAGGTCAAGTTCTCCGGCGAAG-TCCGACGATGGTGCCTCGACAAAGAAAAATATG
518 CTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATG
* * * * *
19921573 GCACGAGCACATGCCCGAGCCTAGCATGTGCTGCCACAA--C-C--TTC-G---G-TC-TGGTCT
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACT
* *
19921627 --G-AT---CT--G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
19921682 AGCGTGCGGGTGCTTAGCTGGCCAGAGGGGCGGGACGCGCAAGTCGGGGATCGGACGGGTCCCCC
713 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCC
* * * **
19921747 TCTGTGTGCTACCAATCCTGCTGTCGCAACCCTCAGT-TCGGTCCAATCTTAGACTGGGAATGAA
778 TCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAA
* * ** *
19921811 CTCCGTATGCCATAAGCCAACCCACGAAACGAG-AGGCGGGCAAGC--GGGCACTATGCCG
842 CTCCGTATGCC-TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCG
*
19921869 GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*** *
19921934 ATATTTCTATGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * *
19921999 ACGTGAAGTTTAATGGCGAGAAGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* * *
19922064 TCGGGATTTTTTAAAATTCTTTCGGAAGAAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGT
196 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGT
*
19922129 ATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA-ATTTTGTTACCAT
260 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
19922192 TTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * **
19922257 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGTGA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * ** *
19922322 AGTATC-GACACCAATCGCACATCATGTGCGTACGCTTCCCCGGCCCCCCCGATCATCGAAACCC
455 AGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * **
19922386 TAAAGTCGCCGGTCA---------G-G-T--T-------T--T---CCGACGAAGAAAAATGCGG
519 TAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
* * *
19922426 CACGAGCACATGCCCGAGCCCAGCATGTGCTACCG-AAACC-C---TC-G---G-TC-----C--
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
* * *
19922474 GG--T---CT---AAT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
649 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
19922530 GCGCGCGGGTGCTTAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGAGGATTGGATGGGTCCCCCT
714 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCT
* * * ** *
19922595 CTATGTGCTGACAATCCTGCTGCCGCAACCCTTGGTCTGGTCTGAACTTAGACTGGGAATGAACT
779 CTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * ** *
19922660 CCGTATGCCTAAGCCAACCCATGAAACGAG-AGGCGGGC-GG-TTGGGCACAACGCCG
844 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCG
* **
19922715 GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGGTGGTAGGTCAGTTTAGGCACATCTT
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
19922780 CATATTTCTACGTGCCACTGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTGAAGCCTT
65 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
19922845 CACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTGACGATTTTCGAAACTTTTTGCGC
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGG
* * * *
19922910 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCAGAAACTTGGTAGATGTGATCCTTG
195 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTG
* * * * *
19922975 TATTTTTCTTGGCATGCACAAAAATATTTATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
19923040 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATATCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
19923105 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
19923170 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCCCCCCGATCATCAGAACCT
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * **
19923233 TAATGCTGCCGGTCAGGTTCTCCGGCGATGCTCCTACGATGGTGCCCCGA-GAAAGAAAAATGGG
519 TAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG-AAGAAAAATATG
* * *
19923297 GCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGG-TCTGGTCCAATCATAGAC
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGAC
* *
19923361 TGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAAC
647 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * ** * ** * *
19923426 GAGCGTGAGGGCGTTCAGCCGGCCAGAGGGGATGTATGCGCAAATCGGGGATC-GACCGATCCCC
712 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCC
* * * * * * *
19923490 TTCTGTGTGCTGCCGATCCTGCTGCCATAGCACTC-GATCTGGTCTGACCTTAGACAGGGAATGA
777 CTCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGA
* * * * ** *
19923554 ACTTCGTATGCCTAAGCCAAACGACGAAACGAGCGGCCAGGCAGGAAGGCGGGCACTGCGCCG
841 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCGG-GGGCACTACGCCG
* * * *
19923617 GCTAGAGAGACGGGATGCGCAAGCGGTGAATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
19923682 ATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
19923747 ACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* * *
19923812 TTGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGTTCCCAAACTTGGTAGACATGATCCTTG
196 TCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTG
* * *
19923876 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
19923941 TTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGGTACTAGCAGCAAACCTGTAAAATCTAA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
19924006 AATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** ** * *
19924071 AAGTACCAGCATGCATCGCACATCATGTGCGCACACCCCCCCGATCCCCCCGATCACCAGAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCC
* * * *** * ** ***
19924136 TAATGCCGTCAGTCAGGTTCTTCAATGATGCTCCGACGATGGTGCACCGGTGAAGAAAAATGCAG
519 TAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
* *
19924201 CACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCCG-TCTGGTCCGATCTTAGACT
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACT
* * * * *
19924265 GAGAATGAACTCCGTATGCGTAGACTGGGAATGAGCTCTGCATGCCTAAGTCAACCCACGAAACG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
19924330 AGCGTACGGGCGCTCAGCCCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCC
713 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCC
* * * *
19924395 TCTGTGTGCTGCCAATCTTGCTGCCACAACCCTCAGTCCGGTCTAATCTTATACTGGGAATGAAC
778 TCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * *
19924460 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCG
843 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG-GGGCACTACGCCG
* * *
19924521 GCCAGAGAGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
19924586 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
**
19924651 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
* **
19924716 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTTATAGACGTGATCCTTGT
196 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
* * * *
19924781 ATTTTTTTTTTTGG-TTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGC
260 A---TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19924845 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCAGTAAAATCT
322 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
19924910 CAGATGCTCTTTAAGGGGTTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGACCAATATAAGGG
387 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
19924975 CCAAGTACTAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGTCCCCCCGATCGTCGAAAC
452 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAAC
* *** * * * * *
19925040 CCCAATGCTATCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCACAGGCGAAGAAAAATGT
517 CCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAT
* * *
19925105 GACACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAC
* *
19925170 TGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAAC
647 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
19925235 GAGCGTGCGGCCGCTCAGCCGGCTAGAGAGGGCGAGATGTGCAAGCCAGGGATCGGCCGAGTCCC
712 GAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCC
** * * ** * *
19925300 CCTCTACGTGCTGCCAATCCTGCT-CCTGCAACCCTCAGCCCAGT-TCAATCTTACACTGGGAAT
776 CCTCTGTGTGCTGCCAATCCTGCTGCC-ACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAAT
* * *
19925363 GAACTCCGTATGCCGAAGCCAACCGACGAAACGAGCGGGCAGGCGGGTGGGTGGTCACTACGCCG
839 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG-GG-CACTACGCCG
*
19925428 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
19925493 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
19925558 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
** ** * ** *
19925623 TCGTAATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCCTTTT
196 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
* * *
19925688 ATTTTTGTTTGCATG-AACAAAAAAATTCAGCTAAAAACTCGACGTGTAGAAGATTTTGTGACCA
260 ATTTTTGTTGGCATGCAA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
19925752 TTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
19925817 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGCCAATTTAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** *
19925882 AAGTACCAGCACCCATCGCACATCATGTTTGCACACCCCCCAGG-CCCCCCGAT--TGCTGGAAC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCAT-C-GGAAC
* * * * *
19925944 CCTAATGCCGCCGGTTAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATAC
517 CCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAT
* * * *
19926009 GGCACCAGTACATGCCTGAGCCCAACATGTGCTGTCGCAA-CC-C---TC-G---G-TC-----C
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGAC
19926059 -------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
647 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
19926113 GAGCGTGCGGGCGCTCAGCCGACCAAAGGGGTGGGATGCGCAAGCCGGGGATC-GACCGGGTCCC
712 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGA-CGGGTCCC
* * * * * ** * * * *
19926177 TCTCTCTATGCTGTCGATCCTGCTATCGCAACGCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
776 CCTCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* * *
19926242 ACTTCGTATGCCTAAGTCAACCCACGAAAC
841 ACTCCGTATGCCTAAGCCAACCGACGAAAC
19926272 AAGTGCGCGG
Statistics
Matches: 6153, Mismatches: 757, Indels: 313
0.85 0.10 0.04
Matches are distributed among these distances:
845 1 0.00
846 73 0.01
847 419 0.07
848 37 0.01
849 163 0.03
850 1 0.00
851 2 0.00
852 53 0.01
853 2 0.00
855 1 0.00
856 1 0.00
857 2 0.00
858 1 0.00
860 1 0.00
863 2 0.00
864 230 0.04
865 211 0.03
866 2 0.00
867 13 0.00
868 200 0.03
869 7 0.00
870 2 0.00
871 1 0.00
872 48 0.01
873 6 0.00
874 1 0.00
875 2 0.00
876 192 0.03
877 140 0.02
878 326 0.05
879 2 0.00
880 5 0.00
881 2 0.00
882 94 0.02
883 103 0.02
884 2 0.00
885 12 0.00
886 448 0.07
887 42 0.01
888 1 0.00
889 3 0.00
890 75 0.01
891 2 0.00
893 4 0.00
894 7 0.00
895 4 0.00
896 1 0.00
897 270 0.04
898 185 0.03
899 4 0.00
900 2 0.00
901 411 0.07
902 63 0.01
903 234 0.04
904 517 0.08
905 256 0.04
906 870 0.14
907 394 0.06
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCTA
ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCT
GTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCG
Found at i:19924309 original size:26 final size:26
Alignment explanation
Indices: 19924259--19924309 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19924249 GGTCCGATCT
*
19924259 TAGACTGAGAATGAACTCCGTATGCG
1 TAGACTGAGAATGAACTCCGCATGCG
* * *
19924285 TAGACTGGGAATGAGCTCTGCATGC
1 TAGACTGAGAATGAACTCCGCATGC
19924310 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGCATGCG
Found at i:19924736 original size:904 final size:904
Alignment explanation
Indices: 19922482--19926093 Score: 5027
Period size: 904 Copynumber: 4.0 Consensus size: 904
19922472 CCGGTCTAAT
* * ** * *
19922482 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
19922547 CGGCCAGAGGGGCGGGACGCGCAAGCCGAGGATTGGAT-GGGTCCCCCTCTATGTGCTGACAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCCGGTCCCCCTCTATGTGCTGCCAATC
* ** * *
19922611 CTGCTGCCGCAACCCTTGGTCTGGTCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCACAACCCTCAGTCCGGTCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** *
19922675 AACCCATG-AA--A-CGAG-AGGCGGGCGGTTGGGCACAACGCCGGCCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
** * * *
19922735 AAGCCATGGATCGATACGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCTACGTGCCACTG
260 AAGCCATGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
19922800 CCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAA
324 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
19922865 GACAACTCGTTTTCTATTTTTGACGATTTTCGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTT
389 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* ** *
19922930 TTTCGGAAGGAGTTTTGG-CCAGAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCAC
454 TTTCGGAAGGAGTTTTGGTCC-CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
* * *
19922994 AAAAATATTTATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
518 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
19923059 TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTG
583 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
19923124 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
648 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
19923189 ACATCATGTGCGCACA-CCCCCCGCCCCCCCGATCATCAGAACCTTAATGCTGCCGGTCAGGTTC
713 ACATCATGTGCGCACACCCCCCCGTCCCCCCGATCACCAGAACCCTAATGCCGCCAGTCAGGTTC
* * * * *
19923253 TCCGGCGATGCTCCTACGATGGTGCCCCGAG-AAAGAAAAATGGGGCACCAGCACATGCCCGAGC
778 TCCAGCGATGCTCCGACGATGGTGCACCG-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
19923317 CCAGCATGTGTTGCCGCAACCCTCGGTCTGGTCCAATCATAGACTGGGAATGAACTCCGTATG
842 CCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19923380 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGA-GGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGGGCGCTCAG
** * ** * * * * *
19923444 CCGGCCAGAGGGGATGTATGCGCAAATCGGGGATC-GACCGATCCCCTTCTGTGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTATGTGCTGCCAATC
* * * * * * * *
19923508 CTGCTGCCATAGCACTC-GATCTGGTCT-GACCTTAGACAGGGAATGAACTTCGTATGCCTAAGC
130 CTGCTGCCACAACCCTCAG-TCCGGTCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * *
19923571 CAAACGACGAAACGAGCG-GCCAGGCAGGAAGGCGGGCACTGCGCCGGCTAGAGAGACGGGATGC
194 CAACCGACGAAACGAGCGAG-CAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
** * * *
19923635 GCAAGCGGTGAATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAT
258 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
19923700 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCA
323 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
19923765 AGACGAGTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATT
388 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
19923830 TTTTCGAAAGGAGTTTTGTTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
453 TTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
* *
19923895 AAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
518 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
19923960 TTTCAGACACTTTAATGGGTACTAGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTTG
583 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* **
19924025 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGC
648 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
19924090 ACATCATGTGCGCACACCCCCCCGATCCCCCCGATCACCAGAACCCTAATGCCGTCAGTCAGGTT
713 ACATCATGTGCGCACACCCCCCCG-TCCCCCCGATCACCAGAACCCTAATGCCGCCAGTCAGGTT
* ** * * *
19924155 CTTCAATGATGCTCCGACGATGGTGCACCGGTGAAGAAAAATGCAGCACCAGCATATGCCCGAGC
777 CTCCAGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
19924220 CCAGCATGTGCTGCCGCAACCCTCCGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATG
842 CCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19924283 CGTAGACTGGGAATGAGCTCTGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
19924348 CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGTGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTATGTGCTGCCAATCC
*
19924413 TGCTGCCACAACCCTCAGTCCGGTCT-AATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCAGTCCGGTCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19924477 ACCGATGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCA
196 ACCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
19924542 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
261 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
19924607 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
19924672 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
391 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * *
19924737 TCGGAAGGAGTTTTGGTCCCAAACTTTATAGACGTGATCCTTGTATTTTTTTTTTTGG-TTGCAC
456 TCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTA---TTTTTTTTGGCATGCAC
*
19924801 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCA
518 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
19924866 TTTCAGACACTTTAATGGCTACTGGTAGCAAACCAGTAAAATCTCAGATGCTCTTTAAGGGGTTG
583 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
19924931 TGAGTTCTCGAGCTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACTAGCACCCATCGC
648 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * ***
19924996 ACATCATGTGTGCACACCCCCCCGGTCCCCCCGATCGTC-GAAACCCCAATGCTATCAGTCAGGT
713 ACATCATGTGCGCACACCCCCCC-GTCCCCCCGATCACCAG-AACCCTAATGCCGCCAGTCAGGT
* * * *
19925060 TCTCCGGCGATGCTCCGACGATGGTGCACAGGCGAAGAAAAATGTGACACCAGCACATGCCCGAG
776 TCTCCAGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
19925125 CCCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19925189 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
19925254 CGGCTAGAGAGGGCGAGATGTGCAAGCCAGGGATCGG-CCGAGTCCCCCTCTACGTGCTGCCAAT
66 CGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGGTCCG-GTCCCCCTCTATGTGCTGCCAAT
* * * * *
19925318 CCTGCT-CCTGCAACCCTCAGCCCAGT-TCAATCTTACACTGGGAATGAACTCCGTATGCCGAAG
129 CCTGCTGCC-ACAACCCTCAGTCCGGTCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
19925381 CCAACCGACGAAACGAGCGGGCAGGCGGGTGGGTGGTCACTACGCCGGCCAGAGAGACGGGATGC
193 CCAACCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
**
19925446 GCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
258 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
19925511 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCA
323 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
**
19925576 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGTAATTTTTTAAAATT
388 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * * *
19925641 TTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCCTTTTATTTTTGTTT-GCATGAA
453 TTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTTGGCATGCA
* * *
19925705 CAAAAAAATTCAGCTAAAAACTCGACGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA
517 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
19925770 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
582 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
19925835 GTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCG
647 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * * ** ** * *
19925900 CACATCATGTTTGCACACCCCCCAGGCCCCCCGATTGCTGGAACCCTAATGCCGCCGGTTAGGTT
712 CACATCATGTGCGCACACCCCCCCGTCCCCCCGATCACCAGAACCCTAATGCCGCCAGTCAGGTT
* * * * * * *
19925965 CTCCAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGTACATGCCTGAGC
777 CTCCAGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
19926030 CCAACATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 CCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
19926093 C
1 C
19926094 CTAAGTCAAC
Statistics
Matches: 2399, Mismatches: 285, Indels: 54
0.88 0.10 0.02
Matches are distributed among these distances:
896 2 0.00
897 78 0.03
898 83 0.03
900 2 0.00
901 413 0.17
902 61 0.03
903 229 0.10
904 504 0.21
905 213 0.09
906 423 0.18
907 391 0.16
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTATGTGCTGCCAATCC
TGCTGCCACAACCCTCAGTCCGGTCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCCGTCCCCCCGATCACCAGAACCCTAATGCCGCCAGTCAGGTTCTCC
AGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAA
CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19925192 original size:26 final size:26
Alignment explanation
Indices: 19925163--19925215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19925153 CCGGTCCGAT
*
19925163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19925189 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19925215 C
1 C
19925216 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19926332 original size:159 final size:159
Alignment explanation
Indices: 19926038--19926421 Score: 515
Period size: 159 Copynumber: 2.4 Consensus size: 159
19926028 GCCCAACATG
* *
19926038 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTATCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
19926103 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGTGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACAAGCGCGCGGGCACTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGGGGATCGA
19926168 CCGGGTCCCTCTCT-CTATGCTGTCGATCC
131 CCGGGTCCCTCTCTGC-ATGCTGTCGATCC
* * *
19926197 TGCTATCGCAACGCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTATCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
19926262 CCCACGAAACAAGTGCGCGGTCACTCAGCC-AGCCAGAGGGGCGGGATGCACAAGCTGGGGATCG
66 CCCACGAAACAAGCGCGCGGGCACTCAGCCGA-CCAAAGGGGCGGGATGCACAAGCCGGGGATCG
* *
19926326 ATCGGGTCCCTCTCTGCGTGCTGTCGATCC
130 ACCGGGTCCCTCTCTGCATGCTGTCGATCC
* ** * *
19926356 TGCTA-CTGCAACCCTCAGT-TCGATCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
1 TGCTATC-GCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
19926419 AAC
64 AAC
19926422 TGACGAAATG
Statistics
Matches: 197, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
158 3 0.02
159 193 0.98
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
TGCTATCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCGCGCGGGCACTCAGCCGACCAAAGGGGCGGGATGCACAAGCCGGGGATCGA
CCGGGTCCCTCTCTGCATGCTGTCGATCC
Found at i:19927144 original size:26 final size:26
Alignment explanation
Indices: 19927115--19927168 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19927105 CTAGTCCGAT
19927115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
19927141 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19927167 CT
1 CT
19927169 AAAGTCAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19927998 original size:26 final size:26
Alignment explanation
Indices: 19927947--19927999 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19927937 CTGGTCAGAT
* * *
19927947 CTTAGGCTGGTAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19927973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19927999 C
1 C
19928000 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19928868 original size:26 final size:26
Alignment explanation
Indices: 19928839--19928891 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19928829 CTGGTCCGAT
* *
19928839 CTTAGACTTAGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
19928865 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
19928891 C
1 C
19928892 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:19931025 original size:26 final size:26
Alignment explanation
Indices: 19930995--19931063 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
19930985 GTCCAGTCTA
*
19930995 GAATGAACTCCATATGCTTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
19931021 GAATGAACTCCGTATGCTTAGACTGG
1 GAATGAACTCCGTATGCTTAGACTGG
19931047 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
19931064 CTAAGTCAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACTGG
Found at i:19931947 original size:26 final size:26
Alignment explanation
Indices: 19931908--19931960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19931898 CCGATCCAAT
*
19931908 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
19931934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19931960 C
1 C
19931961 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19932847 original size:26 final size:25
Alignment explanation
Indices: 19932806--19932857 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19932796 CTGGTACAAT
*
19932806 CTTAGACTGGAATGAATTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
19932831 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
19932857 C
1 C
19932858 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:19933731 original size:26 final size:26
Alignment explanation
Indices: 19933702--19933754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19933692 CCGGTCTGAT
*
19933702 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19933728 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19933754 C
1 C
19933755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19934641 original size:26 final size:26
Alignment explanation
Indices: 19934605--19934657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19934595 CCCATCGAAT
19934605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19934631 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19934657 C
1 C
19934658 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19935552 original size:26 final size:26
Alignment explanation
Indices: 19935501--19935553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19935491 CTGGTTAGAT
* *
19935501 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
*
19935527 CTTAGACTGCGAATGAACTTCATATG
1 CTTAGACTGCGAATGAACTCCATATG
19935553 C
1 C
19935554 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:19935752 original size:899 final size:896
Alignment explanation
Indices: 19930195--19936418 Score: 8127
Period size: 905 Copynumber: 6.9 Consensus size: 896
19930185 CGTGTGAGTT
* * * * *
19930195 CTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCAGGGATCGATCGGGTCCACCTCTACATGCT--
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC-CCTCTTCGTGCTGC
* * * *
19930258 --A--CTGC-A--GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTA
65 CGATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * * *
19930316 AGCCAACCGACGAAATAAGCGGGCGGGCGGGCGGGTACTACGCCGGCCTGAGAGACGGGCTACGC
130 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
19930381 AAGTCGTGCATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTTTGCATGCCAATGC
195 AAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
19930446 CATTTTTATGGCTTGTAGATTCTTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
260 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19930511 ACGACTCGTTTTCTATTTTTCATGACTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
325 ACGACTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
19930576 CTCAGAAGGAGTTTTCGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-A
390 TTCGGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
19930640 AAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
454 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
19930705 TCAGACACTTTAAGGGGTACTAGCAGCAAACTTGTAAAATCTCAAATGC-CTTTTAAAGGGGTGT
519 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGT
* * **
19930769 GAGTTCTCGAGGTTTGATTAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTAA
583 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * **
19930834 CAT-ATGTGCGCACACCCCCCGGCCCACCCGATCG-CTGGAACCCCAATGTCATCGGTCAGGTTC
648 CATCATGTGCGCACACCCCCCGGCCC-CCTGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
* * *
19930897 TCTGCCGATGCTCC-ACGATGGTGCCCCTACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
711 TCTG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * *
19930961 CAGCATGTGCTGCCATAACTCTCGGTCCAGTCTAGAATGAACTCCATATGCTTAGACTGGGAATG
775 CAGCATGTGCTGCCGCAACCCTCGGTCC-G----G--T---CT--AGAT-CTTAGACTGGGAATG
* *
19931026 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTG-
827 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
*
19931090 AGGCG
892 GGGCG
* * * * * *
19931095 CTCAGCCAGCCTGAGGGGCAGGATGCGCAAGTCGGGGATCGGGT-GGGTCCCCTTCTGT-GTGTT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCC-TCT-TCGTGCT
* * * * *
19931158 ACCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCC
63 GCCGATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *** *
19931223 TAAGCCAATCGACGAAACGAGCGGGCGGGC-GAC---AACTACATGGGGCAGAGAGACGGGATGC
128 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
19931284 ACAAGCCGTGCATCGATAGGGTGGCAGCTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAAT
193 GCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
19931349 TCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
258 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * **
19931414 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATT
323 AGACGACTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* *
19931479 TTTTCGGAAAGGAGTTTTGGCCCGAAACTTGGTTGACGTGATCCCTGTATTTTTGTTGGCATGCA
388 TTTTCGG-AAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
19931544 CAAATAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGGAAAAAGTGTCCCC
451 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
19931609 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCCTTAAGTGGGT
516 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
19931674 GTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
581 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * **
19931739 CACATCATGTGCGCACAGCCCCCCCGGTCCCCCCGATCATCATAACCCCAATGCCGCCGGTCAGG
646 CACATCATGTGCGCACA--CCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * ** * * *
19931804 TTCTCCGATGATGCTTCGGTAATGGTGCCCCGGCAAAGAAAAATGCCGCACCAGCACATGCCCGA
708 TTCTCTG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * *
19931869 GCCCAGCATGTGCTGTCGCAACCCTCCGTCCGATCCA-ATCTTAGACTGAGAATGAACTCTGTAT
772 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
19931933 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
837 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * * *
19931993 CTCAACCGGCTAGAGGGGCGGGATGCGTAAGTCGAGGATCGGTCGGGGCCCCCTCTGCGTGTTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCTCTTCGTGCTGC
* * *
19932058 CGATCCTGCTACCATAACCCTCGGTCTAGT-TCGATCTTAGACTGGTAATGAACTCCGTATGCCT
65 CGATCCTGCTACCGTAACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
19932122 AAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGCCACTACATCGGGCAGAGAGACGGGATGCG
129 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
19932187 CAAGCGGTGCATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTACATATTTCTGCATGCCAATG
194 CAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
19932252 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGGCAA
259 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
19932317 GACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTGTAAAATTT
324 GACGACTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
19932382 TTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCATA
389 TTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
19932446 AAAAATTTAAG-TAAAAACTCGAACTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCAT
453 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
19932510 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGT
518 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
19932575 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCA
583 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
19932640 CATCATGTGCACACAACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTC
648 CATCATGTGCGCAC-ACCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * ** *
19932705 TCCGACGATGCTCTGGCGATAGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGTCCGAGCC
711 TCTG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
19932770 AAGCATGTGCTACCGCAACCCTCGGTCTGGTAC-A-ATCTTAGACT-GGAATGAATTCCGTATGC
775 CAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CTAGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
19932832 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCAGGCT
839 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * * * * *
19932890 CTTAGCCGGCCAGAAGGACCGGATACACCAGCCAGGGATCGACCGGGTCCCCAT-TTGGGTGCTA
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC-TCTT-CGTGCTG
* * * * * * *
19932954 CTGATCCTGTTACCGTAACTCTTGGTCCAATCTGATCTTAGATTGGGAATGAACTCCGTACGCCT
64 CCGATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
19933019 AAGCCAATCGACGAAATGA----GTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
129 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
** * *
19933080 CAAGCTTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATT
194 CAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
19933145 CCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
259 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
19933210 GACGACTCGTTTTATATTTTTCATGATTTTC-AAATCTTTTGGCGGTTCGAGATTTTTTAAAATT
324 GACGACTCGTTTTCTATTTTTCATGATTTTCTAAA-CTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * * * *
19933274 TTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAAGAGATCCCTGTATTTTTTTTGGCATGCAC
388 TTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
19933339 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
452 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
19933404 TTTCAGACATTTTAACGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTG
517 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
19933469 AGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACACATCGC
582 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
19933534 ACATCATGTGTGCACACCCCCCTTGGCCCCTCTGATCGTCGGAACCCTAATGCCGTCGGTCAAGT
647 ACATCATGTGCGCACACCCCCC--GGCCCC-CTGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
19933599 TCTCCGGCGATGCTCCGAG-GATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGA
709 TCT-CTGCGATGCTCCG-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
19933663 GCCCAGCATGTGCTGCCGCAAGCCTCGGTCCGGTCT-GATCTTAGATTGGGAATGAACTCCGTAT
772 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
19933727 GCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACGCACAAAACGAGCGTGCGAGCG
837 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
19933787 CTCAGCCGGCCAGAGGGGCGAGACGCGCAAGCCGGGGATTGACCGAGTCCCCCTCTGCGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTTCGTGCTGC
* * * * *
19933852 CAATCCTGCTGCCGTAACCCTCGGTTCAGTCTGATCTTAGACTAGGAATGAATTCCGTATGCCTA
65 CGATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
19933917 AGCCAACCGACAAAACGAGCACGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGGT
130 AGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
19933982 GCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGCATGCTA
191 GCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
19934047 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
256 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
19934112 CAAGACGACTCGATTTCTATTTTTGACGATTTT-TGAAACTTTTTGCGGTTCGAGATTTTTTAAA
321 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTGCGGTTCGGGATTTTTTAAA
* *
19934176 ATTTTTTCGTAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
385 ATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
19934241 CACAAAAACATTCTA-CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
449 CACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
19934305 CCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCACTTTAAGGG
513 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
19934370 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAATGGCCAAGTACCAGCACCCA
578 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
19934435 TCGCACATCATGTGCGCACACCCCCCGACCCCTTTGATCGCCGGAACCCCAATGCCGCCGGTCAA
643 TCGCACATCATGTGCGCACACCCCCCGGCCCC-CTGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * *
19934500 GTTCTCTGGCGATCCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
707 GTTCTCT-GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * ** *
19934565 AGCCCGGCATGTGCTGCTGCAACCCTCGGTCCCATCGA-ATCTTAGACTGGGAATGAACTCCGTA
771 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTA
* * * *
19934629 TGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCCCGAAATGAGTGTGCGGGCG
836 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
19934690 CTCAGTCGGCCAGAGGGGCAGGATCCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTTCGTGCTGC
* * * * *
19934755 CAATCCTGTTGCCGTAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
65 CGATCCTGCTACCGTAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * *
19934819 AAGCCAACCGATTAAATGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTG
129 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
19934884 TAAGCCGTGTATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTTTGCATGCCAATG
194 CAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * *
19934949 CAATTTTTATGCCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAA
259 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
19935014 GGCGACTCGTTCTCTATTTTTCACGATTTTCTAAA-TGTTTTGCGGTTCGGGATTTTGTAAAATT
324 GACGACTCGTTTTCTATTTTTCATGATTTTCTAAACT-TTTTGCGGTTCGGGATTTTTTAAAATT
* * *
19935078 TTTTCGGAAGGAATTTTGGCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
388 TTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
19935143 AAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCAT
453 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
19935208 TTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
518 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
19935273 GAGTTCTCGAGGTTTGATTAGGGATACGAGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCA
583 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
19935338 CATCATGTGCGGACACCCCCCGGCCCCCTGATCGCCGGAACACCAATGCCGTCGATCAGGTTCTC
648 CATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
19935403 ATGTGATGCTCCGGTGATCGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAG-CCA
713 -TGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
19935467 GCATGTGCTACCGCAACCCTCGGTCTGGT-TAGATCTTAGACTGGGAATGAACTCCGTATGCTTA
777 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
19935531 GACTGCGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCG
842 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** * *
19935586 CT-AGCCGACCAGAGGGGCGGGATACGTAAGCCAAGGATCGATCGAGTGCCCCTCTTCGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTTCGTGCTGC
* ** ** * ** * *
19935650 CGATGCTGCGGCCGCGACCCTCAGTCCAGTCCAATCTTAGATTAGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
19935715 AGCCAACCAACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCATAGAGACGGGAT
130 AGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * **
19935780 GCACAAGTCGTGGATCAATAGTATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
191 GCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
** *
19935845 ATGCCATTTTTATGGCTTGTAAATTCATACAATTCTCCCTTAAGCCTTCACCTGAAGTTTCATGG
256 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
19935910 CAAGACGACTTC-TTTTCTATTTTTCATGATTTT-TGAAACTTTTTACGATTCAGGATTTTGTAA
321 CAAGACGAC-TCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTGCGGTTCGGGATTTTTTAA
* *
19935973 AATTTTTTCGGAAGGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
384 AATTTTTTCGGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
19936038 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTC
448 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
19936103 CCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
513 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
19936168 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCA
578 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
19936233 TCGCACATCATGTGTGCACA-CCCCCGGCCCCCCTGATCATCGGAACCCCAATGCCGTCGGTCAG
643 TCGCACATCATGTGCGCACACCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAG
*
19936297 GTTCTC--CG--G-T-----GATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGA
707 GTTCTCTGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
19936352 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTAT
772 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
19936416 GCT
837 GCT
19936419 GCCAATCCTG
Statistics
Matches: 4689, Mismatches: 553, Indels: 174
0.87 0.10 0.03
Matches are distributed among these distances:
889 41 0.01
890 59 0.01
891 1 0.00
892 3 0.00
893 258 0.06
894 28 0.01
895 305 0.07
896 240 0.05
897 516 0.11
898 524 0.11
899 657 0.14
900 352 0.08
901 43 0.01
902 215 0.05
903 324 0.07
904 2 0.00
905 680 0.15
906 56 0.01
907 180 0.04
908 14 0.00
909 73 0.02
910 48 0.01
911 70 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTTCGTGCTGCC
GATCCTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
Found at i:19937191 original size:26 final size:26
Alignment explanation
Indices: 19937162--19937214 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19937152 CCGGTCCGAT
*
19937162 CTTAGACTAGGACTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19937188 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19937214 C
1 C
19937215 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.