Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 110 of 117
Found at i:19937542 original size:171 final size:171
Alignment explanation
Indices: 19937250--19937630 Score: 455
Period size: 171 Copynumber: 2.2 Consensus size: 171
19937240 CGGGCGCTCA
* * *
19937250 GCCGGCTAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGTGTCCCCCTCTGCGTGCTGCCAAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAAT
* ** *
19937315 CTTGCTGTCACAACCCTCAGTCCCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCC
66 CCTGCTACCACAACCCTCAGTCCCATCTAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCC
* *
19937380 AACCGATGAAACGAGCG-GAC-AGGCAAGCGGGCGGGCACTAC
131 AACCGACGAAACGAGCGAG-CGA-GCAAGCGGGCAGGCACTAC
* * * *
19937421 GCCGGCCAGAGGGGCGGGATGCGCAAGTC-GAGGATTGGTCGGGTCCCCCTCTACGTGCTGCCGA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGATCGGGTCCCCCTCTACGTGCTGCCAA
* ** *** * * *
19937485 TCCTGCTACCGCAATGCTCAGTCTGGTCTAATCTTAGACTGGGAATGAATTCCGTATGCCTAGGC
65 TCCTGCTACCACAACCCTCAGTCCCATCTAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGC
**
19937550 CAACCGACGAAACGAGCGAGCGAGCGGGCGGGCAGGCACTAC
130 CAACCGACGAAACGAGCGAGCGAGCAAGCGGGCAGGCACTAC
* * *
19937592 GTCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGAT
19937631 AGCGTGGTAG
Statistics
Matches: 176, Mismatches: 31, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
170 1 0.01
171 173 0.98
172 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.17
Consensus pattern (171 bp):
GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAAT
CCTGCTACCACAACCCTCAGTCCCATCTAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCC
AACCGACGAAACGAGCGAGCGAGCAAGCGGGCAGGCACTAC
Found at i:19939275 original size:715 final size:712
Alignment explanation
Indices: 19937501--19939694 Score: 3027
Period size: 702 Copynumber: 3.1 Consensus size: 712
19937491 TACCGCAATG
** * * *
19937501 CTCAGTCTGGTCTAATCTTAGACTGGGAATGAATTCCGTATGCCTAGGCCAACCGACGAAACGAG
1 CTCAGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
19937566 CGAGCGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * **
19937631 AGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATCCCATTTTTATTTCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
19937696 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
** * * *
19937761 TTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAATTTT
261 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
19937826 GGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AGAAAAATTTCAGCTAA
326 GACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA-AAAAAATTCAGCTAA
* * * *
19937890 AAACTCAAAGTGTACCAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
19937955 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
19938020 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
* * *
19938085 CCCTACCGGCCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCT-CC-A-G-T---GA
585 CCC--CCCGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCGATGCTGGCGA
* *
19938143 ---TGCTCCGGCGAAGAAAAATACGGCACAGCACAT-CCCGAGCCCAACATGTGCTGCCACAACC
648 TGGTGCTCCGGCGAAGAAAAATACGGCACAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* ** * *
19938204 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCGACCGACGAAACGAG
1 CTCAGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
19938269 CGGGCGGGCGGGCAGGTGGGCATTACGCTGGCC-GAGAGACAGGATGTGCAAGCCGTGGATCGAT
66 CGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
19938333 ATGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTT
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
19938398 TAAACTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
* *
19938463 TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGCGTTTT
261 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
*
19938528 GACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
326 GACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *** *
19938593 AACTCGAAGTTTACAAGATTTTGTGACCATTGGAAAAAAGTGTCTTGATTTCAAACACTTTAATG
391 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * *
19938658 GCTAGTGGCAGCAAACATGTAAAATCTCAAATGCTCGTTAAGCGGGTGTGAGTTCTCGAGGTTTG
456 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* *
19938723 ATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCATAC-C
521 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC
*
19938787 CCCCCG-CTCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGGCG
586 CCCCCGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--CGATGCT--GGCG
** * *
19938851 ATGGTGCTCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAA
647 ATGGTGCTCCGGCGAAGAAAAATACGGCA-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
19938916 CC
711 CC
* * * *
19938918 CTCTGTCTCATCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
1 CTCAGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * *
19938983 CGGGCGGGTGGGCAGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* **
19939048 AGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * *
19939113 TAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTTTTTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
* ** *
19939178 TTTTTCATGATTTTTGAAACTTTTTGCAATTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
261 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
*
19939243 AACCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCCACAAAAAAATTCAGCTAA
326 GACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG-CACAAAAAAATTCAGCTAA
* * *
19939307 AAACTCGAAGTGTACAAGATTTTGTAACCATTTTG-AAGAAGTGTCCCCATTTCTGACACTTTAA
390 AAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
19939371 TGGCTACTGGCAGCAAACCCGT-AAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
* *
19939435 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCC-GCACCCATCACACATCATGTGCGCA
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCACA
* * *
19939499 CACCCCCCGACCCCCTCGATCGTCGGAA---C-A--CCGTCGGTCAGGCTCTCCGGTGATGCTTT
583 CACCCCCCG-CCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--CGATGC--T
* * * * * * * *
19939558 GGCGATGGTTCCCCGGCAAAGAAAAATATGACACAGCACAAGCCCTAGCCCAGCATGTGCTGTCG
643 GGCGATGGTGCTCCGGCGAAGAAAAATACGGCACAGCACATGCCCGAGCCCAGCATGTGCTGCCG
19939623 CAACC
708 CAACC
* * ** * *
19939628 CTCAG-CCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCACAAAACGA
1 CTCAGTCTCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
19939692 GCG
65 GCG
19939695 TGCAGGCGTT
Statistics
Matches: 1311, Mismatches: 153, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
698 38 0.03
699 4 0.00
701 4 0.00
702 440 0.34
703 86 0.07
704 1 0.00
709 5 0.00
710 86 0.07
711 47 0.04
712 22 0.02
713 10 0.01
714 219 0.17
715 331 0.25
716 3 0.00
717 15 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
CTCAGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC
CCCCCGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCGATGCTGGCGATGG
TGCTCCGGCGAAGAAAAATACGGCACAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
Found at i:19940561 original size:25 final size:26
Alignment explanation
Indices: 19940522--19940573 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19940512 TCGGTCCGAT
19940522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19940548 CTTAGA-TTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19940573 C
1 C
19940574 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19941445 original size:26 final size:26
Alignment explanation
Indices: 19941409--19941461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19941399 CCAGTTCGAT
* *
19941409 CTTAGATTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19941435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19941461 C
1 C
19941462 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19941730 original size:159 final size:159
Alignment explanation
Indices: 19941435--19941786 Score: 454
Period size: 159 Copynumber: 2.2 Consensus size: 159
19941425 ACTCCGTATG
* ** *
19941435 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAAC
* * * *** * * *
19941500 CGGCCAGAAGGGTGGGATGCATAAGTTGGGGATCAGTTGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAAGGGCGAGATGCACAAGACAGGGATCAGCTGGGTCCCCCTCTGCGTGCTACCAATCC
* * *
19941565 TGCTGCCACAACCCTC-GATCTGGTCCGAT
131 TACTGCCACAACCCTCAG-TCCGGTCCAAT
* * * * *
19941594 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAAC
* *
19941659 CGGCCAGAAGGGCGAGATGCACAAGACAGGGATCAGCTGGGTCCCCTTCTGCGTGCTGCCAATCC
66 CGGCCAGAAGGGCGAGATGCACAAGACAGGGATCAGCTGGGTCCCCCTCTGCGTGCTACCAATCC
19941724 TACTGCCACAACCCTCAGTCCGGTCCAAT
131 TACTGCCACAACCCTCAGTCCGGTCCAAT
** *
19941753 CTTAGACTCAGAATGAACTCCATATGCCTAAGCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
19941787 CAATTGACGA
Statistics
Matches: 165, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
159 164 0.99
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAAC
CGGCCAGAAGGGCGAGATGCACAAGACAGGGATCAGCTGGGTCCCCCTCTGCGTGCTACCAATCC
TACTGCCACAACCCTCAGTCCGGTCCAAT
Found at i:19942069 original size:26 final size:26
Alignment explanation
Indices: 19942031--19942083 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19942021 CCGGTCCGAT
*
19942031 CTTAGATTAGGAAGGAACTCTGTATG
1 CTTAGATTAGGAAGGAACTCCGTATG
* *
19942057 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTAGGAAGGAACTCCGTATG
19942083 C
1 C
19942084 CCAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTAGGAAGGAACTCCGTATG
Found at i:19942937 original size:26 final size:26
Alignment explanation
Indices: 19942899--19942971 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
19942889 CAGGTCCGAT
*
19942899 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19942925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19942951 CTTAGACTAGGAATGAACTCC
1 CTTAGACTAGGAATGAACTCC
19942972 ATACGCCTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19943864 original size:26 final size:26
Alignment explanation
Indices: 19943828--19943880 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19943818 CCAGCCCGAT
19943828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19943854 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19943880 C
1 C
19943881 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19944233 original size:903 final size:895
Alignment explanation
Indices: 19941801--19948844 Score: 8373
Period size: 903 Copynumber: 7.9 Consensus size: 895
19941791 TGACGAAATG
* ** *
19941801 AGGGGGTGTGAGTTCTC-ACGGTTTGATGTGGGATAGGGGGTTAATATAAAGGCCAAGTACCAGC
1 AGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** * * *
19941865 ACCCATCGCTCGTCATGTGCGCACACCCCCCCCGACCCCCCCGATCACCGGAACCCCAATTCTGT
65 ACCCATCGCACATCATGTGCGCACA-CCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGC
* *
19941930 CGGTCAGGTTCT-C--CGA--CT-----ATGGT-CCACCGATGAAGAAAAATACGACACCAGCAT
128 CGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCC-CCGACGAAGAAAAATACGACACCAGCAC
* * * * * * * *
19941984 ATGCCCAAGCCCAGCATGTTCTGCCGCAACCCTC-GATCCGGTCCGATCTTAGATTAGGAAGGAA
192 ATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-TCCAGCCCGATCTTAGACTGGGAATGAA
* * * *** * *
19942048 CTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCCAAGTCAAATTACGAAATGAGCGTGCGA
256 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *
19942113 GCGCTCAGTCGGCCA-ATGGTGTGAGATGCGTAAGTC-AGGATCGGA-AGGGTCCCCCTCTGCGT
321 GCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGAGGATC-GATCGGGTCCCCCTCTGCGT
* * *
19942175 GCTGCCG-----A-------AACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
384 GCTGCCGATCCTACTGCTGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
19942228 GCCTAAGCCAACCGA--TAAAACGAACGGGC---C-GGCACTACGTCGGCCAGAGAGACGGGATG
449 GCCTAAGCCAACCGACGAAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
19942287 TGAAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAA
514 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* *
19942352 AGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
579 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
19942417 AAGACGTCTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTCGCTGTTCGAGATTTTTTAAAAT
644 AAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * * * *
19942482 TTTTTCGAAAGGAGTTCTAGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCGTGCA
709 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCA
*
19942547 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
774 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCC
* * *
19942612 ACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCCCTTTA
838 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
19942670 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * ** * *
19942735 CCCATTGCAAATCATGAGCGCACACCCCGTCGGCCCCCCCGACCGTCGGAACCCCAATGCCGCAG
66 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
19942800 GTTAGGTTCT-C--CGA---T----GATGGTGCCCCGACGAATAAAAATGC-ATCACCAGCACAT
130 GTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGA-CACCAGCACAT
**
19942854 GCCCGAGCCCAGCATGTGCTACCGTAACAATTGGTCAGGTCCGATCTTAGACTAGGAATGAACTC
194 GCCCGAGCCCAGCATGTGCTACCG---CAA-----C----CC--TC--AG--T--CCA-G--C-C
* * * *
19942919 TGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATACGCCTAAGT
235 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** *
19942984 CAACCCACGAAACGAGCGTGCAGGCGCTCAGTTGGCCAGAGGGGCGGGATGCGCAAGCAGAGGAT
298 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* ** * * * * * * *
19943049 CGACCGGGTCCCCCTCTGAATGGTGCTGATCCTGCTGCCGCAACCTTC-AGTCCAGTCTGATCTT
363 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCGA-TTCGGTCTGATCTT
*
19943113 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCGG
427 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AA-----CGAGCGGGCGGGCGG
* *
19943178 GCACTACG-CTGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
486 GCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
19943242 AGGCACATCTTCATATTTCTA-AGAGCCAATGCCATTTTTATGGCTTGCAAATTCACACAATGGT
550 AGGCACATCTTCATATTTCTACA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
19943306 CCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAAACAACTCGTTTTCTATTTTTCATGATTTTCAA
614 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAA
* * *
19943371 AACTTTTTACGGTTCGAGATTTTTAAAAATTTTTTTGGAAGGACTTTTGGCCCCAAACTTGGTAG
679 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
19943436 ACGTGATCCTTGTATTTTTCTTGGCATGCAGAAAGAAATTCAGCTAAAAAATCGAAGTGTACAAG
744 ACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
19943501 ATTTTGGTGACCATTTGAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
809 ATTTT-GTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
19943566 TGTAAAATCTCAAATGCCCCTTA
873 TGTAAAATCTCAAATGCTCTTTA
*
19943589 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * ** ** *
19943654 CCCATCGCACATCTTGTGCTCACACCCCGTCGGCCCCCCGGCCGTCGGAACCCCAATGCTGCCGG
66 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* ** * *
19943719 TCAGGTGCTCCGGCGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGCGTCACCAGCACATG
131 TCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATG
* * * *
19943784 CGCGAGCCCAGTATGTGCTGCCGAAACCCTCAGTCCAGCCCGATCTTAGACTGGGAATGAACTCC
195 CCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGCCCGATCTTAGACTGGGAATGAACTCC
* * * *
19943849 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGGGCAC
260 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * *
19943914 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCACTGTGTGCTGCC
325 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
19943979 GATCATGCTGCTGCAACCCTTGATTCGGTC-CAGTCTTAGACTGGGAATGAACTCCCTATGCCTA
390 GATCCTACTGCTGCAACCCTCGATTCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTA
*
19944043 AGCCAACCGACGAAAAGAGCGCGAGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGAT
454 AGCCAACCGACGAAAA-A---CGA--GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
** * *
19944108 GCGCAAGCCACGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
513 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* *
19944173 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGG
578 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
19944238 CAAGATGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
643 CAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA
** * *
19944303 TTTTTTCGGAAGGAGTTTTTACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTTC
708 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGC
* *
19944368 ACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
773 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCC
19944433 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
837 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
19944492 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
19944557 CCCA-CTGCACATCATGTGTGCACACCCCCCCGACCCCGCCGATCGTCGGAACCCTAATGCCGCT
66 CCCATC-GCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCC
* * * * *
19944621 GGTCTGGTTCTTCGACGATGCTCCAGTGATGGTGCCCCGGCGAAGAAAAATACGACACCAGCACA
129 GGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACA
* * * * *
19944686 TGCTCGAGCCCAGCATGTTCTTCCGTAACCCTCAGT-CTG---G----T---C-----A-G-A-T
193 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGCCCGATCTTAGACTGGGAATGAACT
* * * * *
19944732 ---T-TG---AGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAACGTGTGAGC
258 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
19944790 GCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG
323 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTG
* * * * * *
19944855 TCGATCCT-GTAGCTGCAACCCTTG-GTCTGGTCTGATCTTTGACTGGGAATAAACTCCGTATGC
388 CCGATCCTACT-GCTGCAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * * *
19944918 CTAAGCCAACTGATG--AAACGAGCAGGCGAGAGGGCACCACGCCAGCCAGTGAGACGGGATGCG
451 CTAAGCCAACCGACGAAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* *
19944981 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATG
516 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
19945046 CCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
581 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
19945111 GACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTATACAGTTC-AGGATTTTTTTAAATT
646 GACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
* *
19945175 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCTTGCAC
710 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC
*
19945240 AAAAAAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTA
775 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCA
*
19945304 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
839 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
19945361 AGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
19945426 CCCATCGCACATCAAGTGCGCACACCCCCCTGGCCCCCCCGATCG-CAAGAACCCCAATGCCGTC
66 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCC
* * ** *
19945490 GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACA
129 GGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACA
** *
19945555 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTTC-GTCCAGCTTGATCTTAGACTGGGAATGCAC
193 TGCCCGAGCCCAGCATGTGCTACCGCAACCC-TCAGTCCAGCCCGATCTTAGACTGGGAATGAAC
* *
19945619 TCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
257 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
19945684 CGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCGATCGGGTCCCCGTCTGCATGCT
322 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCT
* * * * *
19945749 ACCGATCCTACTACTGCAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTTCTTATGCC
387 GCCGATCCTACTGCTGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
19945814 TAAGCCAACCGATGAAACGAACGGGCGGACGGGTGGTCGGGCACTATGCCAGCCAGAGAGACGGG
452 TAAGCCAACCGACGAAA--AACGAGCGG--GCG-GG-CGGGCACTACGTCGGCCAGAGAGACGGG
* *
19945879 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGC
511 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
19945944 CAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAAT
576 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
19946009 GGCAAGACGACTCATTTTTTATTTTTCACGA-TTTCTAAAACTTTTTACGGTTCGAGATTTTTTA
641 GGCAAGACGACTCATTTTCTATTTTTCATGATTTTC-AAAACTTTTTACGGTTCGAGATTTTTTA
* * * * **
19946073 AAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTAGGTAGACGTTATCCTCGTATTTTTGTTGGAA
705 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCT
* * *
19946138 TGCATAAAAAAATTTAG-TAGAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAGAAAAGTG
770 TGCACAAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAGTG
*
19946202 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTA
833 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
19946265 A-GGGGTGTGAGTTCTGGAGGTGTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * ** * *
19946329 CCCATCGCACATCTTGTGTGCACA-CCCCCTGGCTCCCCGATCACCGGAACCCCAATTCCGCCAG
66 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * *
19946393 TCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
131 TCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATG
* * * *
19946458 CCCGAGCCCAGTATGTGCTGCCGTAACCCTCAGTCCGGTTGATCTTAGACTGGGAATGAACTCCA
195 CCCGAGCCCAGCATGTGCTACCGCAACCCTCAGT-C-------C--AG-C----------C-CGA
* * *
19946523 TCTGCTTAGACTGGGAATGAACTCCATCTGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCA
238 --T-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
19946588 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCG
300 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* * *
19946653 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGTAACCCAT-G-GTCTGGTCTCATCTTA
365 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCC-TCGATTC-GGTCTGATCTTA
* * * * *
19946716 GACTGGGAATGAACTCCGTATACCTAAGCCAACTGATG--AAACGAGCGGGTGGGCGGGCACCAC
428 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAACGAGCGGGCGGGCGGGCACTAC
* *
19946779 GCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
493 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
19946844 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGC
558 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * ** *
19946909 CTTCACGTAAAGTTTCATGGCAAGAAGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTG
623 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTA
* * * * **
19946974 CGGTTCGGGATTTTTTGAAATTTTTTCGGAAGGGGTTTTGGTCCCAAACTTCTTAGACGTGATCC
688 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
19947039 TTGTATTTTTTTTGGCTTCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
753 TTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
19947104 CCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-AAAACT
818 CCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-T
19947168 CTCAAATGCTCTTTA
881 CTCAAATGCTCTTTA
* * * *
19947183 AGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAAGGCCAAGTACCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * ** *
19947248 CCCATCACACATCACGTGTGCACGCCCCCCCGGTAACCCCGATCG-CTGGAA-CCCAATGCCGTC
66 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCC
* * * * *
19947311 GATCAAGTTCTCTGGCGATGCTCCGTGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
129 GGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACA
* ** * *
19947376 TGCCCGAGCCCAGCATGTGCTACCGCAACCCT-TGATCTGGTCAGATCTTAGACTGGGAATGAAC
193 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-TCCAGCCCGATCTTAGACTGGGAATGAAC
* * *
19947440 TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGTGGG
257 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
19947505 CGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTGTGTGCT
322 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCT
* *
19947570 GCCGATCCTACTGCTGCAACCCTCG-GTCTGGTCTGATCTT-GTACCGGGAATGAACTCCGTATG
387 GCCGATCCTACTGCTGCAACCCTCGATTC-GGTCTGATCTTAG-ACTGGGAATGAACTCCGTATG
* * * *
19947633 CCTAAGCCAACCGACG--AAACGAGCAGACGGGCGGGCACCACGTCGGCCAAAGAGACGGGATGC
450 CCTAAGCCAACCGACGAAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * * *
19947696 GCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTAATATTTGTGA-GTGCCAA
515 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAA
* * *
19947760 TGCCATTTTTTTGGCTTGTAAATTCGTACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGC
579 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** **
19947825 AAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGAATTTTTT-AAA
644 AAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAG-ATTTTTTAAAA
* * * * *
19947889 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGATCCGTGCATTTTTGTTGGCATGC
708 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGC
* * * * * * *
19947954 GCAAAGAACTTCAGATAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAATGGTGTCCC
773 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AGTGTCCC
* *
19948019 CATTTCAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTA
837 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
19948078 AGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGCCAAGTAGCAGCA
1 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * **
19948142 CCCATCGCACATCATGTGCGCACA-CCCCCTAGCCCCCCAATC-TCTGGAACCCCAATGCCATCG
66 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCG
** * * *
19948205 GTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACAT
130 GTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACAT
*
19948270 GCCCGAGCCCAGCATGTGCTACCGTAA-CC-C--T-C-G---G-TC-----C---G---G---TC
194 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGCCCGATCTTAGACTGGGAATGAACTC
*
19948311 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCG
259 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
19948374 CGCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGT
324 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * *
19948439 CGGTCCTACTG-TCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGACTGAACTCCGTATGCCT
389 CGATCCTACTGCT-GCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
19948503 AAGCCAACCGACG--AAACGAGCGGGCGGGCGGGGGGCACTACGTCGGCCAGAGAGACGGGATGC
453 AAGCCAACCGACGAAAAACGAGCGGGCGGGC---GGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
19948566 GCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAC
515 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
19948631 GCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
580 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
19948696 AGACGACTCGTTTTCTATTTTTCAGGGTTTTCGAAACTTTTTACTGTTCGGGATTTTTTAAAATT
645 AGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
19948761 TTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGGTTGCAT
710 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC
19948826 AAAAAAA-TCAGCTAAAAAC
775 AAAAAAATTCAGCTAAAAAC
19948845 CCTAATGCTG
Statistics
Matches: 5375, Mismatches: 610, Indels: 380
0.84 0.10 0.06
Matches are distributed among these distances:
866 1 0.00
867 191 0.04
868 99 0.02
869 406 0.08
870 545 0.10
871 3 0.00
872 4 0.00
873 1 0.00
875 2 0.00
876 3 0.00
877 4 0.00
878 168 0.03
879 1 0.00
880 3 0.00
881 2 0.00
882 3 0.00
883 2 0.00
884 1 0.00
885 3 0.00
886 3 0.00
887 3 0.00
888 2 0.00
889 2 0.00
891 1 0.00
892 19 0.00
893 102 0.02
894 134 0.02
895 812 0.15
896 17 0.00
897 1 0.00
898 1 0.00
899 8 0.00
900 3 0.00
901 117 0.02
902 29 0.01
903 1020 0.19
904 218 0.04
905 2 0.00
906 2 0.00
907 56 0.01
908 1 0.00
909 4 0.00
910 3 0.00
911 3 0.00
912 1 0.00
913 2 0.00
915 9 0.00
917 9 0.00
918 403 0.07
919 539 0.10
920 118 0.02
921 16 0.00
922 8 0.00
923 1 0.00
924 2 0.00
925 3 0.00
926 203 0.04
927 1 0.00
929 55 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGC
CCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGCCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
ATCCTACTGCTGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
Found at i:19945630 original size:26 final size:26
Alignment explanation
Indices: 19945601--19945653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19945591 CCAGCTTGAT
* *
19945601 CTTAGACTGGGAATGCACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
19945627 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19945653 C
1 C
19945654 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19946532 original size:26 final size:26
Alignment explanation
Indices: 19946501--19946573 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
19946491 TCCGGTTGAT
19946501 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATCTG
19946527 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATCTG
19946553 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
19946574 GTATGCCTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATCTG
Found at i:19947033 original size:918 final size:902
Alignment explanation
Indices: 19944735--19948844 Score: 5247
Period size: 895 Copynumber: 4.6 Consensus size: 902
19944725 GTCAGATTTG
* * * * * **
19944735 AGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAACGTGTGAGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * *
19944800 CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT-G
66 CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
* * * *
19944864 TAGCTGCAACCCTTGGTCTGGTCTGATCTTTGACTGGGAATAAACTCCGTATGCCTAAGCCAACT
131 T-GCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
19944929 GATGAAACGAGCAGGCGAGAGGGCACCACGCCAGCCAGTGAGACGGGATGCGCAAGCCGTGGATC
195 GATGAAACGAGCAGGCGGGCGGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
19944994 GATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* *
19945059 TTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTT
* * * * *
19945124 CTATTTTTCACGATTTTCAAAACTTTATACAGTTCAGGATTTTTTTAAATTTTTTCGAAAGGAGT
390 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTAAATTTTTTCGGAAGGAGT
* *
19945189 TTTGGCCCCAAACTTGGTAGACGTGATCCTTC-TATTTTTGTTGGCTTGCACAAAAAAATT-AGC
454 TTTGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
19945252 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCTATTTTAGACACTT
519 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAATGTGTCCCCATTTCAGACACTT
19945316 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTTGAG
* *
19945381 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCAAGTGCG
648 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** *
19945446 CACACCCCCCTGGCCCCCCCGATCGCAAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
713 CACA-CCCCCTGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* ** * *
19945511 TCCGACGATGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
776 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
19945576 ACCGCAACCCT-T-C--G-TCCAGCT-TG--ATCTTAGACTGGGAATGCACTCCATATGCTT
841 ACCGCAACCCTCTCCTTGATCTAGCTGTGTCATCTTAGACTGGGAATGAACTCCATATGCTT
*
19945630 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * * * *
19945695 CCAGAGGGGCGGGATGCGTAAGCTGGGGATCGATCGGGTCCCCGTCTGCATGCTACCGATCCTAC
66 CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
* * * * *
19945760 TACTGCAACCCTCGAT-TCAGTCTGATCTTAGACTGGGAATGAACTTCTTATGCCTAAGCCAACC
131 TGCTGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
19945824 GATGAAACGAACGGGC-GGACGGGTGGTCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAG
195 GATGAAACG-A---GCAGG-C--G-GG-CGGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAG
* * *
19945888 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCAAT
251 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
19945953 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
316 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
19946018 ACTCATTTTTTATTTTTCACGATTTCTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
381 ACCCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTC
* * * * *
19946083 GGAAGGAGTTTTGGCCCTAAACTAGGTAGACGTTATCC-TCGTATTTTTGTTGGAATGCATAAAA
445 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAA
* *
19946147 AAATTTAG-TAGAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAGAAAA-GTGTCCCCATT
510 AAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAATGTGTCCCCATT
*
19946210 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGTGTGA
574 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA
* * *
19946275 GTTCTGGAGGTGTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
639 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
19946340 TCTTGTGTGCACACCCCCTGGCTCCCCGATCACCGGAACCCCAATTCCGCCAGTCAGGTTCTCCG
704 TCATGTGCGCACACCCCCTGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
19946405 GCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGT
769 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
19946470 ATGTGCTGCCGTAACCCTCAGTCCGGTTGATCTTAGACTGGGAATGAACTCCATCTGCTTAGACT
834 ATGTGCTACCGCAACCCTC--TCC--TTGATC-TAG-CT--G--TG---T-CA--T-CTTAGACT
*
19946535 GGGAATGAACTCCATCTGCTT
882 GGGAATGAACTCCATATGCTT
* * *
19946556 AGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
19946621 CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
66 CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
* * * *
19946686 TGCTGTAACCCAT-GGTCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACT
131 TGCTGCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
19946750 GATGAAACGAGCGGGTGGGCGGGCACCACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
195 GATGAAACGAGCAGGCGGGCGGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
19946815 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
19946880 TTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTAAAGTTTCATGGCAAGAAGACCCATTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTT
* * * *
19946945 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTGAAATTTTTTCGGAAGGGGT
390 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTCGGAAGGAGT
* ** * * * *
19947010 TTTGGTCCCAAACTTCTTAGACGTGATCC-TTGTATTTTTTTTGGCTTCCACAAAAAAATTCAGC
454 TTTGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
19947074 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAATGTGTCCCCATTTCAGACACTT
519 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAATGTGTCCCCATTTCAGACACTT
*
19947138 TAATGGCTACTGGCAGCAAACCTG-AAAACTCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGA
584 TAATGGCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGA
* * * * *
19947202 GGTTTGATGAGGGATAGGAGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCACGTGT
647 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * * *
19947267 GCACGCCCCCCCGGTAACCCCGATCGCTGGAA-CCCAATGCCGTCGATCAAGTTCTCTGGCGATG
712 GCAC-ACCCCCTGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
**
19947331 CTCCGTGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
775 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*** *
19947396 TACCGCAA----C-CCTTGATCT-G--GTCAGATCTTAGACTGGGAATGAACTCCGTATGCTT
840 TACCGCAACCCTCTCCTTGATCTAGCTGTGTCATCTTAGACTGGGAATGAACTCCATATGCTT
* * *
19947451 AGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * * *
19947516 CCA-AAGGGGCGGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTGTGTGCTGCCGATCCTA
66 CCAGAA-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTA
*
19947580 CTGCTGCAACCCTCGGTCTGGTCTGATCTT-GTACCGGGAATGAACTCCGTATGCCTAAGCCAAC
130 CTGCTGCAACCCTCGGTCTGGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19947644 CGACGAAACGAGCAGACGGGCGGGCACCACGTCGGCCAAAGAGACGGGATGCGCAAGTCGTGGAT
194 CGATGAAACGAGCAGGCGGGCGGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
19947709 CGATAGAGTGGTAGGTGGGTTTAGGCACATCTTAATATTTGTGA-GTGCCAATGCCATTTTTTTG
259 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATG
* * *
19947773 GCTTGTAAATTCGTACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATT
* * ** * *
19947838 TTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGAATTTTTTAAATTTTTTTGGAAGGA
388 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCG-GGATTTTTTAAATTTTTTCGGAAGGA
* * * * *
19947903 GTTTTGGCCCCAAACTTGGTAGAGGTGATCCGT-GCATTTTTGTTGGCATGCGCAAAGAACTTCA
452 GTTTTGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
19947967 GATAAAAACTCAAAGTGTACAAGATTTTGTGACCA-TTG-GAAAATGGTGTCCCCATTTCAGACA
517 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAT-GTGTCCCCATTTCAGACA
* * *
19948030 CTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTT
*
19948095 GAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGCCAAGTAGCAGCACCCATCGCACATCATGT
645 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * **
19948159 GCGCACACCCCCTAGCCCCCCAATCTCTGGAACCCCAATGCCATCGGTCAGGTTCTCCGATGATG
710 GCGCACACCCCCTGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
* *
19948224 CTCC-AGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTG
775 CTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
19948288 CTACCGTAA------CC-----CT--C-G-G---TC-----C---G---G---TCC-GAT-CTT
839 CTACCGCAACCCTCTCCTTGATCTAGCTGTGTCATCTTAGACTGGGAATGAACTCCATATGCTT
* * *
19948318 AGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCGCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
* * * * * *
19948383 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGGTCCTAC
66 CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
* * * *
19948448 TG-TCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGACTGAACTCCGTATGCCTAAGCCAACC
131 TGCT-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
19948512 GACGAAACGAGCGGGCGGGCGGGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 GATGAAACGAGCAGGCGGGC---GGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
19948577 AACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACGCCATTTTTAT
257 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
19948642 GGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCAT
* * ** * *
19948707 TTTCTATTTTTCAGGGTTTTCGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
387 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTCGGAAGG
* * ** *
19948772 AGTTTTGGCCCCAAACATGGTAGACGTGATCC-TTGTATTTTTGTTGGGTTGCATAAAAAAA-TC
451 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAAAAATTC
19948835 AGCTAAAAAC
516 AGCTAAAAAC
19948845 CCTAATGCTG
Statistics
Matches: 2836, Mismatches: 307, Indels: 170
0.86 0.09 0.05
Matches are distributed among these distances:
866 1 0.00
867 189 0.07
868 4 0.00
869 23 0.01
870 255 0.09
872 1 0.00
875 1 0.00
878 1 0.00
883 2 0.00
887 3 0.00
892 15 0.01
893 99 0.03
894 50 0.02
895 780 0.28
896 17 0.01
898 3 0.00
899 3 0.00
901 112 0.04
902 18 0.01
903 345 0.12
904 104 0.04
905 5 0.00
909 2 0.00
910 3 0.00
911 8 0.00
912 2 0.00
913 2 0.00
916 1 0.00
917 9 0.00
918 368 0.13
919 81 0.03
920 100 0.04
921 13 0.00
922 2 0.00
923 3 0.00
925 2 0.00
926 207 0.07
927 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
CCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC
TGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ATGAAACGAGCAGGCGGGCGGGCACCACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTC
TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCGTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAATGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCTGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCTCCTTGATCTAGCTGTGTCATCTTAGACTGGGAATGAACTCCATATGCTT
Found at i:19947458 original size:26 final size:26
Alignment explanation
Indices: 19947422--19947474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19947412 CTGGTCAGAT
*
19947422 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19947448 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19947474 C
1 C
19947475 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19948997 original size:26 final size:26
Alignment explanation
Indices: 19948968--19949020 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19948958 CCGGTCTGAT
19948968 CTTAGACTG-GCAATGAACTCCGTATG
1 CTTAGACTGAG-AATGAACTCCGTATG
19948994 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19949020 C
1 C
19949021 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19949902 original size:26 final size:26
Alignment explanation
Indices: 19949863--19949915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19949853 CTGGCTTGAT
*
19949863 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
*
19949889 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
19949915 C
1 C
19949916 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGAGAATGAACTCCGTATG
Found at i:19950805 original size:26 final size:26
Alignment explanation
Indices: 19950768--19950823 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19950758 CCGGTCCGAT
* *
19950768 CTTAGACAGGGAATGAGCTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
19950794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19950820 CTTA
1 CTTA
19950824 AGTCAACTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19952541 original size:26 final size:26
Alignment explanation
Indices: 19952512--19952564 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19952502 CTGGTTCGAT
* * *
19952512 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
*
19952538 CTTAAACTGTAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
19952564 C
1 C
19952565 CTAAGTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:19953435 original size:26 final size:26
Alignment explanation
Indices: 19953406--19953458 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19953396 CCGATCCGAT
19953406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19953432 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19953458 C
1 C
19953459 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19954342 original size:26 final size:26
Alignment explanation
Indices: 19954306--19954358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19954296 CCGATCCCAT
19954306 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
19954332 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
19954358 C
1 C
19954359 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:19954505 original size:900 final size:898
Alignment explanation
Indices: 19951899--19968854 Score: 10436
Period size: 900 Copynumber: 18.9 Consensus size: 898
19951889 ATGAGAAAGT
* * * *
19951899 CGTGGATCGCTAGTGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCTTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
19951964 TTTATGGCTTGCT-AATTCGTAGAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTATGGCTTG-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
19952027 ACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTC-AGGATTTTTTAAAATTTTTT
130 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * ** *
19952091 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCAATCCTTGTATTTTTATTGGCATGCA-AAAA
194 TGAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
19952155 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTC
258 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
19952220 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
323 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19952285 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACAT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
19952350 CATGTGCGCACACCCCCCCGG-CCCCCCAATCG-CCGGAACCCCAATGTCGTCGGTCAGGTTCTC
453 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCC-GAACCCCAATGCCGCCGGTCAGGTTCTT
* ** * * * *
19952413 CGGCGATGCTCCGGTGATGGTACCCTGGCGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
516 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * *
19952478 GCATGTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAA
581 GCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** * ** * *
19952543 ACTGTAAATGAACTCCGTATGCCTAAGTAAACCCTTGAAACGAGCGTGCGGGCACTCAGCCAGCC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
*** * * * *
19952608 AGACATGCGAGATGCGCAAGCC-AGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACT
711 AGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * ** * *
19952672 ACTGTAA-CCT-ATGGT-TCGGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAAC
775 GCCGCAACCCTCA--GTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * * *
19952734 CGATGAAACGA----GTAGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGCACGCGCAGGC
837 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
19952792 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCACATTTCTACATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19952857 TTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** *
19952922 CTCGTTTTTTATTTTTCTTGATTTTTGAAACTTTTTGA-GGTTCGAGATTTTTTTAAA-TTTTTT
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTT
* * * *
19952985 CAGAAGAAGTTTTGTCCCCAAACTTGGTAGACGTGATCCGTGTATTTTTGTTGGCATGCACAAAA
195 GA-AAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
19953050 AAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
258 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** *
19953115 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAACTCTTTAAAGGGGTGTGAG
323 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
19953180 TTGTCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACTAGCACCCATCGCACAT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * *
19953245 CATGTGCGCACACCCCCC-AACCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
453 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * * * *
19953309 GCGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGC
518 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
*
19953374 ATGTGCTGTTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
583 ATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
19953439 TGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCAG
648 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * * *
19953504 AGGGGCGGGATGCGCAAGCTGGGGATCGGCCGAGTCCCCCTCTGCATGATGTCGATGCTGCTGCT
713 AGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* *
19953569 GCAACCCTC-GATTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
778 GCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
19953633 AAACGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGC
842 AAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
19953690 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * *
19953755 TTTATGGCTTGTAAATTCATACAATTGTCACTTAAGCCTGCACGTCAAGTTTCATGGCAAGTCGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
19953820 CTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* *
19953885 AAATGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
196 AAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
19953950 TTCAGCTAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
261 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
19954015 AACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
326 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
19954080 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
391 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
19954145 GTGCGCACATCCCTCCCGACCCCCCCGATCGTCCGAACCCCAGTGTCGCCGGTCAAGTTCTTCGA
456 GTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCGA
* *
19954210 CGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCA
519 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
** * * *
19954275 TGTGCTACCGTAACCCTCGGTCCGATCCCATCTTAGACTGGGAATGAACTACGTATGCTTAGACT
584 TGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
19954340 GGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGA
649 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
19954405 GGGGTGGGATGCGCAAGCCGACGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCTTGCTGCCA
714 GGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * * *
19954470 CAACCCTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCGACCGACGAA
779 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ** *
19954535 ACAAGCGGGTGGGTGGGCGGGCACTACACCGGCCAGAGAGACGGAATGCGCAAGC
844 ACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
19954590 GGTGGATTGATACGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATC
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19954655 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19954720 CTCATTTTTTATTTTT--C-A----TG--A----TT----TTC--G--------AAA-CTTTTT-
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * * * *
19954756 ----GCG----GCCCCAAACTTGGTAGACATGATCCTTGTGTTTTTATTGGCATGCACAAAAAAA
196 AAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
19954813 TTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
261 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
19954878 CACTCTAATGGCTACTGGCAGCAAA----T----TCTCAGATGCTCTTTAAGGGGGTGTGAGTTC
326 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
19954935 TCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAT
391 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * **
19955000 GTGCGCACACCCCCCGGCCCTCCCGATCGT-CGAAACCCCAATGGTGCCAGTCAGGTTCTCCGGT
456 GTGCGCACACCCCCCGGCCCCCCCGATCGTCCG-AACCCCAATGCCGCCGGTCAGGTTCTTCGAC
* * ** * * *
19955064 GATACTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGACACCACCAAAT-CCCGAGCCCAGCAT
520 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
19955128 GTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
585 GTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
19955193 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTTAGCCGGCCAGAG
650 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * * ** * *
19955258 GGGCGGGATACGCAAGCCAAGGATTAGCCGAGTCCCCCTCTACATGCTGCTAATCCTGCTACCGT
715 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * * **
19955323 AACCCTCGGTCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTATGTCAATCGATAAAA
780 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
19955388 CGAGCGTGCGGACGGG-GGGCGGGCACTACGTTGGCCAGAGGGACGGGATGCGCAAGC
845 CGAGC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
19955445 CGTCGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19955510 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGTAAGATGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
19955575 CTCGTTTTCTATTTTTCATGACTTTCGAAACATTTTACGGTTC-AGGATTTTTTGAAATTTTTTT
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTT
* ** *
19955639 GAAAGGAGTTTT-GCCCTAAACTTGGTAGACATGATCCTCATCTTTTTGTTGGCATGCACAAAAA
195 GAAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
19955703 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCA
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
19955768 GACACTTTAATGGCTACTGGC-GACAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGAGTGAG
324 GACACTTTAATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * * * *
19955831 TTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAATATCAGCAACCATCACACAT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
19955896 CATGTGCGCACACCCCCCCGG-CCCCCCGATTGT-CGAAACCCTAATGCCGCCGGTCAGGTTCTT
453 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCCG-AACCCCAATGCCGCCGGTCAGGTTCTT
* * * * * * ** * *
19955959 TGGCGATACTCTGGCGATGGTGCCCC-AGTGAAGAAAAATACGGCACCAGCACATGTCCAAGCCC
516 CGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * * * * * *
19956023 AGCATGTGCTGTCGCAACCCTTGGTCTGGTCTGATCTTAGAGTGGGAGTGAACTTCGTATGCTTA
580 AGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
19956088 GACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACAAAACGAGCGTGCGGCCGCTCAGTCAGC
645 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * *
19956153 CGGAGGGGCGAGATGTGCAAGACGGGGATCGATCAGGTCCCCCTCTGCGTGCTGCTGATCCTGCC
710 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
** * * * * *
19956218 ATCGCAAACCTCATTCCGGTCTGATCTTAGACTGGGAATGAGCTCCATATGCCTAAGCCAACCGA
775 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
19956283 CGAAACGAGCGGGCGGGCGGGTGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGC
840 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
19956342 CTTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19956407 TTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGACAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
19956472 CTAGTTTTCTATTTTT-AC-------G--A----TT-C-G---G-GATTTTTTAAAA-TTTTTTG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* *** * * *
19956516 GAAGGA-TTGAAGCCCAAACTTGGTAGACATGGAT-CTT-TACTTTTGTAGGCATGCACATAAAA
196 AAAGGAGTTTTGGCCCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACA-AAAA
* * *
19956578 AATT-AGCT-AAAACTCAAAGTGTACAAGATTTTGTGA-CA-TTCAAAAAAGTGTCTCCATTTCA
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19956639 GACACTTCAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCCTCTTT-A--CGGTGTGAG
324 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAG
** *
19956701 TTCTCAGAGGTTTG--GAGGGATA---GTACAATATAAATTTAGAGCCAAGTACC-GCACCCATC
388 TTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATAT--A---AGGGCCAAGTACCAGCACCCATC
* * * *
19956760 G-ACATCATGTGCGCACTA-CCCCTGGGCCCCACGATCGT-CGAGACCCTCAATG-C-CC-GTCC
447 GCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCCGA-ACCC-CAATGCCGCCGGTCA
* * *
19956819 GG-TC-T--A-GA-GCTCCG-TGATGGT-CTCCGA-GAAGAAAAAT-CGGCACCAGCACATGCAC
509 GGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC-C
* ***
19956874 CGTAGCCTAAGCATGTGCT-T---AA-----AAACC--T-C-A-C-T-G-C--GG--TCG--CT-
573 CG-AGCC-CAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAAT-GAACTC
*
19956915 C-TA-----AGACTGGGAA-GATACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGCGGGT
635 CGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * ** * *
19956972 GCTCAACCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATTGACCGGCTACCCCC-CTACAG-GC
699 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGT-CCCCCTCTGC-GTGC
** * * * *
19957035 TATCGATCCTGCTGCCTCAACCCTC-GATCCGGTCCGATCTTAGACT-GGAATGAATTCCGTATG
762 TGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
19957098 CCTAATCCAATCGATGAAACGAGAGGTCGGATGGGCGGGCGGGCACTACGCCGGCCAGAGAGACA
826 CCTAAGCCAACCGACGAAAC--GA-G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
*
19957163 GGATGCGTAAGC
887 GGATGCGCAAGC
* * *
19957175 CGTGGATCGATAGGGTGGCAGGTGGGTTTTGGCACATCTTCATATTTCTACATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
19957240 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
19957305 CTCGTTTTCTATTTTTAACGATTTTTGAAAATTTTTGCTGTTTGAGATTTTTTAAAATTTTTTCG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * * *
19957370 GAAGGAGTTTTGGCCCCAAACTTGGT-GCACGTCATCCTTGTATTTTTTTTGGCATGTACAAAAA
196 AAAGGAGTTTTGG-CCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
19957434 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19957499 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
324 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
19957564 TTTAGAGGTTTGATGAGGGATAGGGGGCCAGTATAAAGGCCAAGTACCAGCACCCATTGCACATC
389 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
19957629 ATGTGCG--CA--------------C-A---T-C---CCCC-TTG--G-C--T-AGGATC-TC--
454 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCGA
* * * ** *
19957660 C---G----G-CGATGGTGTCTCGGCGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCA
519 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
19957717 TGTGCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAT
584 TGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
19957782 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGTGCGCTCAGCCGGCCAGA
649 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * *
19957847 GGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCAACTGCATGCTACCGATCCTGCTGTCG
714 GGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * * *
19957912 CAACCCTCAGT-GGGTCTGATCTTATACTGGGAATGAACTCCGCATGCCTAAGCCAACTGATGAA
779 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
19957976 ATGA--------GCGGGCGGGCACTATGACGGCCAG-GAGACAGGATGTGCAAGC
844 ACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * **
19958022 CGTGGATCGATAGGGTGGCAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19958087 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACAA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
19958152 CTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTAGCGGATC-AGGATTTTTTAAAATTTTTT
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGA-GATTTTTTAAAATTTTTT
19958215 TCG-AAGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
194 T-GAAAGGAGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
19958279 AAATTTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTT
257 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
19958344 CAGACACATTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
322 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19958408 GTTC-CTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACAC
387 GTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
19958472 ATCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTTAGAACCCCAATGCCGTCGGTCAGGTTCT
451 ATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
19958537 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCTC
515 TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
** * * * *
19958602 AGCATGTGCTACCGCAAACCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
580 AGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
19958667 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAACGAG
645 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT----C-AG
19958732 CATACGGGTGCTCAAACGAGCAAAGGGGCGGGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCT
705 C---C--G-G--C---C-AG---AGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCT
* ** * * * * *
19958796 CTACGTGCTGTTGATCCTACTGCCGTAACCCTCAGTCTGATCCGATCTTAGAGT-GGAATGAACT
754 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * *
19958860 CCGTATGCCTAAGCCAACCGACAAAACGAGCGGTCGGGCGGGCGGGCAGGCACTACGCCGGCCAG
819 CCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAG
*
19958925 AGAGACTGGATGCGCAAGC
880 AGAGACGGGATGCGCAAGC
* * *
19958944 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACATGCCAACGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19959009 TTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * * *
19959074 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTTAAAA-TTTTTTC
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * *
19959138 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGCATGCACAAAAA
196 A-AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
19959203 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCT
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19959268 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGT
324 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** * **
19959333 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-TGCC-GCCATTCA-GGTTC-T
389 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACAT
* * ******* ** * * *
19959394 CCGGTGATGCTC-CGGTGATGGTGCCCCGACGA-AGAAAAATGCGACACCAACACATGCTCGAGC
453 -C-ATG-TGCGCACACCCCCCG-GCCCCCCCGATCG-----TCCGA-ACC-CCA-ATGC-C--G-
* * * * * * * * *
19959457 CCAG-CATGTGCTGCCACAACCCTTGATCCGGTCAGAT-GT---CAGACTGTAA-AATCTCAAAT
502 CCGGTCAGGTTCTTCGACGA----TGCTCC-GAC-GATGGTGCCCCGAC-G-AAGAA----AAAT
*** * * * * ** * * **** * ** * *
19959516 GCT--CTTTAAGGAGATG--TGAGTTCTTG-AGGT-TTGAT-G-AGGGATAGG---GGGCCAATA
555 G-TGGC-ACCAGCACATGCCCGAG-CCCAGCATGTGCTG-TCGCAACCCTCGGTCCGATCCGATC
* * *** * ** * * * ** * * **** *
19959570 TAAGGGCCAAGTACCAACACC-CATCGC--ACATCATGTGCGCACACCACCCCCTGGCCCCCCCA
616 TTA-GACTGGGAATGAACTCCGTAT-GCTTAGA-C-TG-G-G-A-ATGAACTCC--GTATGCCTA
* * * ** * ** *
19959632 ATCGTCGGAACCC-C--AATGTTGCCAGT-CAGGTTCTCCGGTGATGCTCCAGTGATGGTGCCCC
671 A--GTC--AACCCACGAAACG-AG-C-GTGCGGGCGCTCAGCCG--G--CCA--GA-GG-G--GC
* *** * * * * * * * * *
19959693 GGTGAAGAAAAATGTGGCACCAGCA-CATGCTCGAG--CCCTTCATGTGCTACTG-CAACCCT-C
719 GG-GATGCGCAA----GC-CGAGGATC--GGTCGGGTCCCCCTC-TGCG-TGCTGCCGATCCTGC
* ** * * *
19959753 AGTCCG-GTCCTTCTTAGACTGCGATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
774 TG-CCGCAACC--CTCAGTCTG-G-T---CT---GAT-CTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
19959817 CTAAGTCAACCCACGAAACGA----GTGTGCGGGC--GCTC-A-GTCGGCCAGAGGGGCAGGATG
827 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
19959874 TGCAAGT
892 CGCAAGC
* * ****** ** * * *
19959881 CGTGGATCGGTTGGGTCCCCCTCTTCGTGCT-GCCA-ATCCTGCTGCCATAGCCTTC-GC-T-CC
1 CGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCACAT-CT--T--CATA--TTTCTGCATGCC
** * * * * * ** * * ** **
19959941 GGT-CTGA-TCTTA-GACTTG-GAA-TGA-ACTCTGTATGCC-TAAGCCAACCGACGAAACAAGC
57 AATGC-CATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCC-TTC-ACG--TGAAG-
** * * **** * ***** * ** * **
19959999 TGGCA-GGCGAG-C-ATTACGCCGACCAGAGAGACAGGA--TGCGCAAGCCGTGGATCGATA-GG
115 TTTCATGGCAAGACGACT-CGTTTTCTA-TTTTTCACGATTTTTG-AA-AC-T---T-TTTACGG
* * * ** **** * ** ** *
19960058 GTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCGTGCG-AAT-G-CC--A-TTTTTATGGC
171 TTCG-AGAT-TTTTTA-A-A-AT-TT--T-TTTGAAAG-GAGTTTTGGCCCAAACTTGGTA-GAC
* *** * *** * * * **** **
19960117 TTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGC-AAAATGACTC---G
225 --GTG-A-TCCTTGTAT-TTTTGTT-GGCATGCACAAAAAAATTCA--GCTAAAA--ACTCGAAG
* * * * * *** * **** * * *
19960178 TTTTC--TATTTT-TCACAATTTTTGAAACTCCTTGCGGTTTGGAATTTTTTA-AAATTTTTTCG
280 TGTACAAGATTTTGTGACCA--TTTGAAA---AAAG-TG-TCCCCA--TTTCAGACA--CTTT--
* ** ** * *** ** * ** * ******
19960239 GAA-GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTCGCATGCACAAAA
332 -AATGG-CTACTGGCAGCAAACCT-GTA-A-A--AT-CTCAAATGCTCTTTAAG--GGGGTGTGA
*** ** * ** ** * ** * ** * * * ** **
19960303 AAACTC-A--ACTAAAAACTCGA-A-GTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCT
387 GTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATA-TAAG-GGCCA--AGTACCA-G-CACCC-
* * * * *** * *** * *** * * * * ***
19960363 ATTTCAGACACTTTA-ATG-GC-TA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAG
444 A--TC-G-CACATCATGTGCGCACACCCCCCGGCCCCCCCG-ATCGTC-CGAA-CCCCAATGCCG
* ** ** * **** * * * ** *
19960423 -GGGTGTGAGTTC-TC-A--ATG-TTTGATGA-GG-GATAAGGGCCAA-TATCA-G-GGC-CAAG
502 CCGGTCAG-GTTCTTCGACGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGTGGCACCAG
* * * * * * * * * ** **
19960476 TATGA-GCTCCCATCGCACATCATGTGC-G-CACACCCCCCCGGACC-CCCCGATCGTCGGAAC-
565 CA-CATGC-CCGA--GCCCAGCATGTGCTGTCGCA-ACCCTCGGTCCGATCCGATC-TTAG-ACT
*** * * * ** * * * *
19960536 CCCAATG-CCGCCAGTCA-GGTT---CTCCGACGATG--CTCC-TGTG-AT-GGT-ACCCCGACG
623 GGGAATGAACTCC-GT-ATGCTTAGACTGGGA--ATGAACTCCGTATGCCTAAGTCAACCC-ACG
*** * * ** ** * * * * **
19960590 -AA-GAAAAATGC-GACAC-CAGCATATGCTCA-A-GCCCAGCATGTGCTA-CCGCA--A-CCCT
683 AAACG-AGCGTGCGGGCGCTCAGC--CGGC-CAGAGGGGCGGGATGCGCAAGCCG-AGGATCGGT
** ** ** * *
19960645 C-GGT-CCGGTCT-AAT-CT-TAGAT--TG--G--G-AA---TGA-ACT--TC-GTATGCTTAGA
743 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTG-AT-CTTAGA
* * * * * * * * * * *
19960691 ATGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAATGA----ACGTGC-GG-GAGCTCGAC
806 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAC
* *
19960750 --CGGCCAGAGGGGCGGGATGCGCAAGC
871 GTCGGCCAGAGAGACGGGATGCGCAAGC
* * * * ** * * * *
19960776 CGGGGATCGACCAGGTCCCCCTTTGCGT-GCTGCCAATCCTACTA-CCACTACCCTCAGTCTGGT
1 CGTGGATCGA-TAGG-------GTG-GTAGGTG--GGT--T--TAGGCAC-ATCTTCA-TAT--T
** * *** * * * *** * * ***
19960839 T-TGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAACCGACGAAACGAGA-GGGCGGG
47 TCTG--C----A-TGCCAATGCCA-TTTTTATGGCT-TG-TAA-ATTC-ATAC-A-ATGGTCCCT
*** * ** *** * * * **
19960901 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGAAT-GATAGGGTGGTAGGTGGG
98 TAAGC-CT---TC-ACGTGA-AG-TTTCATG-GCAAGAC---GACTCG-T---TTTCTA--T---
* * * * * * * * ** *
19960965 TTTAGGCAC-A-TCTTCATA-TTTCTAC-GTGCCAATGCCATTTTTATGGCTCGTAAA-TTCATA
143 TTT--TCACGATTTTTGAAACTTTTTACGGT-TCGA-G--A-TTTT-T---T--AAAATTTTTTT
* * *** ** ** * * * * * * **
19961025 CAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGATGACCCGTTTTCTATTT-TTCACG
195 GAAAGG-AGTTTTGGCC--CA----AA-CTTGGTAG-ACG-TGATCC-TTGTATTTTTGTTGGC-
*** *** * * **** * * ** *
19961089 ATTTTCAAAACTTTTTACGGTTCAGGATTTTTCAGAATTTTTTTGGAAGGAGTTTTG-GCCCCAA
248 ATGCACAAAA-AAATT-CAGCT-A--AAAACTC-GAA---GTGTACAA-GA-TTTTGTG-ACC--
* ** * ** **
19961153 ACTTGGTAGAAGTGAT--CC--TT--GTA-TTTTTGTTGGC-A-T-GCA-CAAA-----AAAATT
299 ATTTGAAAAAAGTG-TCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-T
* ** * * ** * * ** * * * ** *
19961202 CAGCTAAAAACTC--GAA--GTGTACGAGATTTTGTGACCATTTGA--A--AAAAGTGTCCCCAT
361 C-TC-AAATGCTCTTTAAGGGGGTGTGAG-TTCT-CGA-GGTTTGATGAGGGATAGGGGGCCAAT
* * * ** * * * * * * *****
19961259 TTCA-GACACTTTAATGGCTACTGGCAGCAAAC-TTGTA-A-AATCT-CGAATGCTCTTTAAGG-
421 ATAAGGGC-C---AA--G-TAC---CAGCACCCATCGCACATCATGTGCGCA--CACCCCCCGGC
****** ****** * ** ** ** *
19961318 GGGTGTGA--GTTCTCGAGGTTTGATG-AG--GGAT-AGGGGGC--C-AATATAAGGGCC-AAG-
474 CCCCCCGATCG-TC-CGAACCCCAATGCCGCCGG-TCA-GGTTCTTCGACGAT--GCTCCGACGA
*** * * ** * * ** *
19961372 TACCAGCACCC-ATCGTA-CATCATGTGCGCA-CA-C-C--CCCTCG-GCCC-CCCCGAT-C-AT
533 T-GGTGC-CCCGA-CGAAGAAAAATGTG-GCACCAGCACATGCC-CGAGCCCAGCATG-TGCTGT
* ** * * ** * * * *
19961426 CGGAACCC-CAATGCCG--CCGGTC--AGGTTCTCCG-ATGATGCTCTGACG-ATG-GT-GCCCC
592 CGCAACCCTCGGT-CCGATCCGATCTTA-G-ACTGGGAATGA-ACTC---CGTATGCTTAG-ACT
**** * * * ** * * * * * *
19961482 GGTGAA-GAAAAATGT-GGCAC-CAGTACATGCCCTGGCATA-GCA-TGTGCTGTCG-TAACCCT
649 GG-GAATGAACTCCGTATGC-CTAAGT-CA-ACCCACG-AAACG-AGCGTGCGGGCGCTCAGCC-
*** * ** *** ** * * *
19961541 TGGTCCAGTCCAATCTTGGATTGGGAATGAACTCCATACGCTTA-GA-CTGGAATGAACTCCGTA
707 -GG-CCAG----A----GGGGCGGG-ATG--C-GCA-A-GCCGAGGATC-GGTCGGGTCCCCCTC
* ** * * * * * ** * * *
19961604 TGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGCCGGC-CAG-AGGGGCGGGATGCAT
755 TGCGT--G-C--TGC-C-----GATCCTGC-TGC-CGCAACC--CTCAGTCTGGTC-TGAT-CTT
* * ** * ** * * ** * * *** * *
19961667 A-AGCCGAGGATCGGTCGGGTCCTCCTCTGTGTGTTGTTGATCC-TGCTACTGCAACCCTCAGTC
803 AGA-CTG-GGA---AT---GAACT-C-C-GTATG--CCTAAGCCAACCGAC-GAAACGAGCGGGC
*** * * * * ** * *
19961730 ---CAATC-AG-ATCTTA-GACTAGGACTGA-ACTCCGTATGC-CTAAGC
854 GGGCGGGCGGGCA-C-TACG--TCGGCCAGAGAGACGGGATGCGC-AAGC
*** * ** * ** ** * *** * *
19961772 CAACCGAT-GAAACGAGCG-GGCGGGCGGG--CGGGCACTACGTCGACCAGAGACACGGGATGCG
1 C-GTGGATCGATA-G-G-GTGGTAGGTGGGTTTAGGCAC-A--TC-TTCATA-TTTCTGCATGC-
* * *** * *
19961833 CAA-GCCGTGAATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTGCATGCC--
56 CAATGCC----AT---T----T-TTA--TGGCTTGTA---A-A--TTCATA-CAATG-GTCCCTT
* * * * * *
19961894 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
99 AA-GCC---TTCA---CGTG-AAGTT--T-C-ATGG---C--AAGAC--GAC-T--CGTTT--T-
* * * * * *** * *
19961959 GCAAGACGACTTGTTT-TCTATTTTTCATGA-TTTTTGAAACTTTTTATGGTTCGGGATTTTTTA
139 ------CTA-TT-TTTCACGATTTTTGA-AACTTTTT--ACGGTTC--------GAGATTTTTTA
* *
19962022 AAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
185 AAATTTTTTTGA-AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
19962086 ATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
248 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
19962151 TCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
313 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
19962216 GGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACC
378 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
19962281 CATCACACATCATTTGCGCACACAGCCCCCCTGGCCCCCCCGATCG-CTGGAACCCAAATGCCGC
443 CATCGCACATCATGTGCG--CACA-CCCCCC-GGCCCCCCCGATCGTC-CGAACCCCAATGCCGC
* ** * * * **
19962345 CGGTCAGGTTC-TCTGGCGATGCTCTAACGATGGTGCCCCAACGAAGCAAATTACGGCACCAGCA
503 CGGTCAGGTTCTTC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
* * * *
19962409 CATGCCTGAGCCCAGCGTGTGCTATCGTAA-CC-C--T-CG----G----T---CT--G-AT--A
567 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
* * *
19962453 ---CG-AT-CTTAGACTGGGAATGAACTCCATATCCCTAAGTCAACCCACGAAATGAGCGTGCGG
632 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
19962513 GCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGGCAGGTCCCCCTCTGCGTGC
697 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * ** * *
19962578 TACCGATCTTACTGTTGCAACCCTC-GATCTAGTCTGATCTTATACTGGGAATGAACTCCGTATG
762 TGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19962642 CCTAAGCCAATCGACGAAACGAGCGGGTGGGC-GGC---CACTACGCCGACCAGAGAGACGGGTT
826 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
** *
19962703 GCATAAAC
891 GCGCAAGC
* * *
19962711 CATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCGATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19962776 TTGATGGCTTTTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19962841 CTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTC
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTT
** * * * *
19962905 GGTAGAAGTTTTGTCCCCAAACTTGGTAGGCGGGATCCTTGTATTTTTGTTGGCATGCACAAAAA
195 GAAAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
19962970 GATTCAGCTAAAAAATCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
19963035 GACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
324 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
19963100 TCTCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACTAGCACCCATCACACATC
389 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** *
19963165 ATGCGTGCACACCCCTTGGCCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
454 ATGTGCGCACACCCCCCGGCCCCC-CCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* ** *
19963230 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGTTCGGGCCCAGC
518 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
19963295 AAGTGCAGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
583 ATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
19963360 TGGGAATGAACTTCGTATACCTAAGTCAACCCACGAAACGAGCGTCCGGGCACCCAACCGGCCAG
648 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
19963425 AGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGTC
713 AGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * *
19963490 GCAACCCTCATTCTGGTCTAATCTTAGA-TAGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
778 GCAACCCTCAGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
19963554 AAATGAGCGGGCGGGCAGGG-GGGCACAACGTCGACTAGAGAGACGGGATGCGCAAGC
842 AAACGAGCGGGCGGGC-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
19963611 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
19963676 TTTATGGCTTGTAAATTCATGCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** ** *
19963741 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * * * * *
19963806 AAAGGAATTTTGAACCCAAACTTGGAAGACGTGATCCTTTTATTTTTTTTGGCTTGCACAAAAAA
196 AAAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
19963871 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
260 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
19963936 ACACTTTAATGGCTACTGGC-GACGAACCTGTAAAATCTTAAATGGTCTTTAAGGGGGTGTGAGT
325 ACACTTTAATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
19964000 TTTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGCCCATGTACCAGCACCCATCGCACATC
389 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
19964065 ATGTGCGCACACCCCCCCGGCCCTCCAGATCGTCGGAACTCCAATACCGCTGGTCAGGTTC-TC-
454 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCG
** * * ** *
19964128 -CG--G-T-----GATGGTGCCTAGGCAAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGC
518 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * ** * *
19964184 ATGTGCTGCCACAACCCTTGGTATGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC
583 ATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
19964249 T-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAG
648 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * *
19964313 AGCGACGGGATACGCAAACC-AGGGATCGGTCGGGTCCCCCTCTGTGTGCTCCCAATCCTACTGC
713 AGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * *
19964377 CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACCGACG
777 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
19964442 AAACGAGCGGGCGGGCGGGCGGGCAAGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGC
842 AAACGAGCGGGCGGGCGGGC-GG---GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * ** *
19964503 CGTGGATCGATAGGGTGGTAGGTTGGTTTAGACACATCTTCATATTTCTGTGTGCCAATGCAATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
19964568 TTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTACATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
19964633 CTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* *
19964698 AAA-GAGTTTTGGCCCAAAACTTGGTAGGCGTGATCCTTGTATTTTT-TTCGGCATGCAAAAAAA
196 AAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAA
* *
19964761 AATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
19964826 GACACTTTAATGGCTACTAGCGGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
324 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
19964891 TCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACTCATCGTACATC
389 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * * *
19964956 ATGTGCGCACACCACCCAG-CCCCCCGATCGT-CGGACCCCAATGTCACCTGTCAAGTTCTCCGG
454 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCGA
* * * * * **
19965019 TGATGCTTCGGCGATGGTGCCTCGACGAAGAGAAATACGGCACCAGCACATGCCCGAGCCCAGCA
519 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* *
19965084 TGTGCTGCCACAA-CC-C--T-CGATCCG------G--T-----T----T--G-AT-CTTAGACT
584 TGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
19965123 GGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
649 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * **
19965188 AGGGCGGGATGCGCAAGTCGGGGATCGGTTGGCTCCCCCTCCGTATGCTGCCGATCCTGCTGCCG
714 GGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * *
19965253 CAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGAA
779 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
19965318 ACGAACGGGTAGGAGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
844 ACG-A-GCG--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
19965377 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
** * * *
19965442 TTTATATCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACATGAAGTTTCACGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
19965507 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * *
19965572 GAAGGAG-TTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAGAA
196 AAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
19965636 ATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
260 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
19965701 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
325 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
19965766 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACCTCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * *
19965831 AATGCGCACACCAACCCCGG-CCCCCCGATCG-CCAGAACCCCAATGCCGCCGGTTAGGTTCTCC
455 TGTGCGCACACC--CCCCGGCCCCCCCGATCGTCC-GAACCCCAATGCCGCCGGTCAGGTTCTTC
** ** *
19965894 G-CTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
517 GAC-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * * * *
19965958 ACATGTGCTGTCGAAACCCTCGATTCGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCTTAT
581 GCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
19966023 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCACAGTCGGCC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
19966088 AGAGGGGCGGGATGCGTAAGCCGAGGATTGGTTGGGTCCCCCACTGTGTGCTACTGATCCTGGTG
711 AGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * * * * *
19966153 CCGCAACTCT-AGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAACCAA
776 CCGCAACCCTCA-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * **
19966217 CGATACGA----GCGAGTGGGCGGGTACTACGTCGGCCAGAGAGATAGGATGCGCAAGC
840 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* **
19966272 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
19966337 TTTATGGATTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
19966402 CTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCTGTTCGGGATTTTTTAAAA--TTTTTG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* *
19966465 CAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTCTTT-TTGGCATGCACAAA
196 -A-AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAA
*
19966529 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
257 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
19966594 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
322 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
19966659 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACA
387 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** * *
19966724 TCATGTGCGCACACCCGCCC-GACCCCCCGATCGTCGGAACCCCAATGTCATCGGTTATGTTC-T
452 TCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTT
** * ** * *
19966787 ---C-A-G----G-CGATGGTGCCCCGGTGCAGAAAAATACGACACCAGCACATACCCGAGCCCA
516 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * **
19966842 GTATATGCTGTCGCAACCCTCGGTCTGGTCCGATATTAGACTAAGAATGAACTCCGTATGCTTAG
581 GCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** * *
19966907 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATAAACGTGCGGGCGCTC-GACTGGC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGC
* * * *
19966971 CAAAGGGGCAGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
710 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
19967036 ACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAGGCCAACCGA
775 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * *
19967101 TGAAACAAGCGGATGGGCGGGTAGGCGGGCACTACGTCGGCCAGTGAGACAGGATGCACAAGC
840 CGAAACGAGC----GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *** *
19967164 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGCTATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19967229 TTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * * *
19967294 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * * *
19967359 AAAGGAGTTTTAGCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
196 AAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
19967424 ATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAA
260 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
19967488 ACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
325 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * *
19967553 GTGGAGGTTTGATGAGGAATAAGGGGCCAATATAAGGGCCAAGTACCACCACCCATTGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
19967618 TGTGTGCACACCCCCCCGGCCTCCCCGATCG-CCGGAACCCCAATGTCGCCGGTTAGGTTC-TCT
455 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCC-GAACCCCAATGCCGCCGGTCAGGTTCTTC-
* * * * *
19967681 GGCGATGCTCTGACGATGGAGCCCCGGCGAAGAAAAATGTGGCACCAGC-CAATGCCTGAGCCCA
517 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC-ATGCCCGAGCCCA
* *
19967745 GCATGTGCTGCCGCAACCCTC-G---G---C---C-----C---G---G---TCC-AAT-CTTAG
581 GCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
19967784 ACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCACTCAACCGGCC
646 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
19967849 AGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTG
711 AGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* ** *
19967914 CCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
776 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
19967979 GAAACGAGCGGGCGGACGGGCGGGCGGGCACTACG-CGGGCCAGAGAGACGGGATGCGCAAGC
841 GAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGC
* **
19968041 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
19968106 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
19968171 ATCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAA-TTTTTTC
131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
* * *
19968235 AGAAGGAGTTTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAAA
196 A-AAGGAG-TTTTGGCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAA
*
19968300 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
258 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
19968365 AGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
323 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19968430 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATTAGGGCCAAGCACCAGCACCCATCGCACCT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
19968495 CATGTGCGCACACCACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
453 CATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTT
** * *
19968560 CGGTGATGCTCCGGCGATGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
516 CGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * * *
19968624 AGCATGTGCTGTCGCAACCCTCGGTCCGGTTCAATTTTAGACTGGGAATGAACTCCGTATGCTTA
580 AGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
19968689 GACTGGGAATGAACTCCGTATGACTAAGCCAACTCACGAAACGAGCGTGCGGG-TCTCAGCCGGC
645 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * **
19968753 TAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTTACGATCCTGCT
710 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
** * ** * **
19968818 ATCGCAACCTTTGGTCCGACCTGATCTTAGACTGGGA
775 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
19968855 TGCGCAAGCC
Statistics
Matches: 12563, Mismatches: 2368, Indels: 2252
0.73 0.14 0.13
Matches are distributed among these distances:
829 31 0.00
830 122 0.01
831 34 0.00
832 14 0.00
833 192 0.02
834 7 0.00
835 4 0.00
836 3 0.00
837 3 0.00
838 3 0.00
839 7 0.00
840 1 0.00
841 4 0.00
842 1 0.00
843 4 0.00
844 2 0.00
845 2 0.00
846 83 0.01
847 359 0.03
848 27 0.00
849 4 0.00
850 1 0.00
851 2 0.00
852 250 0.02
853 93 0.01
854 18 0.00
855 280 0.02
856 31 0.00
857 34 0.00
858 42 0.00
859 53 0.00
860 211 0.02
861 25 0.00
862 22 0.00
863 155 0.01
864 3 0.00
865 1 0.00
866 15 0.00
867 8 0.00
868 12 0.00
869 47 0.00
870 125 0.01
871 91 0.01
872 16 0.00
873 292 0.02
874 651 0.05
875 41 0.00
876 46 0.00
877 541 0.04
878 86 0.01
879 154 0.01
880 116 0.01
881 12 0.00
882 14 0.00
883 27 0.00
884 269 0.02
885 3 0.00
886 3 0.00
887 7 0.00
888 201 0.02
889 267 0.02
890 13 0.00
891 402 0.03
892 689 0.05
893 102 0.01
894 474 0.04
895 550 0.04
896 450 0.04
897 424 0.03
898 234 0.02
899 239 0.02
900 1230 0.10
901 15 0.00
902 9 0.00
903 240 0.02
904 7 0.00
905 103 0.01
906 57 0.00
907 9 0.00
908 5 0.00
909 99 0.01
910 12 0.00
911 4 0.00
913 5 0.00
914 8 0.00
915 12 0.00
916 3 0.00
917 5 0.00
918 7 0.00
919 3 0.00
920 20 0.00
921 56 0.00
922 384 0.03
923 83 0.01
924 17 0.00
925 14 0.00
926 21 0.00
927 16 0.00
928 16 0.00
929 27 0.00
930 11 0.00
931 9 0.00
932 25 0.00
933 34 0.00
934 22 0.00
935 11 0.00
936 26 0.00
937 90 0.01
938 49 0.00
939 74 0.01
940 42 0.00
941 34 0.00
942 22 0.00
943 18 0.00
944 24 0.00
945 16 0.00
946 10 0.00
947 14 0.00
948 12 0.00
949 41 0.00
950 11 0.00
951 15 0.00
952 24 0.00
953 23 0.00
954 29 0.00
955 13 0.00
956 17 0.00
957 17 0.00
958 10 0.00
959 9 0.00
960 4 0.00
961 4 0.00
962 1 0.00
963 4 0.00
964 14 0.00
965 8 0.00
966 3 0.00
967 19 0.00
968 10 0.00
969 9 0.00
970 15 0.00
971 4 0.00
972 14 0.00
973 3 0.00
975 5 0.00
976 4 0.00
977 2 0.00
978 7 0.00
979 10 0.00
980 9 0.00
981 6 0.00
982 16 0.00
983 27 0.00
984 15 0.00
985 4 0.00
986 12 0.00
987 6 0.00
988 6 0.00
989 13 0.00
990 9 0.00
991 17 0.00
992 19 0.00
993 14 0.00
994 14 0.00
995 17 0.00
996 24 0.00
997 38 0.00
998 25 0.00
999 9 0.00
1000 23 0.00
1001 26 0.00
1002 11 0.00
1003 8 0.00
1004 3 0.00
1005 10 0.00
1006 25 0.00
1007 11 0.00
1008 9 0.00
1009 2 0.00
1011 1 0.00
1012 4 0.00
1013 1 0.00
1015 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
AAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCCGAACCCCAATGCCGCCGGTCAGGTTCTTCGACG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
ACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
Found at i:19955194 original size:26 final size:26
Alignment explanation
Indices: 19955158--19955210 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19955148 CCGGTCCAAT
*
19955158 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19955184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19955210 C
1 C
19955211 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19956094 original size:26 final size:26
Alignment explanation
Indices: 19956058--19956110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19956048 CTGGTCTGAT
* * *
19956058 CTTAGAGTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19956084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19956110 C
1 C
19956111 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19957777 original size:26 final size:26
Alignment explanation
Indices: 19957748--19957800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19957738 CCGGTCCAAT
*
19957748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
19957774 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
19957800 C
1 C
19957801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:19958673 original size:26 final size:26
Alignment explanation
Indices: 19958637--19958689 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19958627 CTGATCCGAT
19958637 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19958663 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19958689 C
1 C
19958690 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19958730 original size:20 final size:20
Alignment explanation
Indices: 19958705--19958753 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
19958695 TCAACCCACG
19958705 AAACGAGCATACGGGTGCTC
1 AAACGAGCATACGGGTGCTC
19958725 AAACGAGCATACGGGTGCTC
1 AAACGAGCATACGGGTGCTC
19958745 AAACGAGCA
1 AAACGAGCA
19958754 AAGGGGCGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (20 bp):
AAACGAGCATACGGGTGCTC
Found at i:19959810 original size:26 final size:25
Alignment explanation
Indices: 19959765--19959816 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19959755 TCCGGTCCTT
19959765 CTTAGACTGCGATGAACTCCATATG
1 CTTAGACTGCGATGAACTCCATATG
* *
19959790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCG-ATGAACTCCATATG
19959816 C
1 C
19959817 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGCGATGAACTCCATATG
Found at i:19960695 original size:26 final size:26
Alignment explanation
Indices: 19960659--19960714 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19960649 CCGGTCTAAT
* *
19960659 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
19960685 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
19960711 CTTA
1 CTTA
19960715 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:19961323 original size:895 final size:895
Alignment explanation
Indices: 19959500--19968854 Score: 12003
Period size: 895 Copynumber: 10.5 Consensus size: 895
19959490 AGATGTCAGA
* * *
19959500 CTGTAAAATCTCAAATGCTCTTTAAGGAGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
19959565 CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCACCCCCTGGCCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCC-GGCCCCCC
* ** * * * *
19959630 CAATCGTCGGAACCCCAATGTTGCCAGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCCCCGG
129 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA
* * * ** * * *
19959695 TGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCTTCATGTGCTACTGCAACCCTCAGTCCGG
194 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
19959760 TCCTTCTTAGACTGCG-ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
259 TCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
19959824 AACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGTGCAAGTCGTGGATC
324 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * ** * * *
19959889 GGTTGGGTCCCCCTCTTCGTGCTGCCAATCCTGCTGCCATAGCCTTC-GCTCCGGTCTGATCTTA
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTA
* * * * * * * *
19959953 GACTTGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCTGGCAGGCGAGCATTACGC
453 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGT
* * *
19960018 CGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCT
518 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
19960083 TCATATTTCTGCGTGCGAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCT
583 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * ** ** *
19960148 TCACGTGTAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTCCTTGCG
648 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* * *
19960213 GTTTGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
713 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
19960278 GTATTTTTTTTTCGCATGCACAAAAAAACTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGAC
778 GTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
19960343 CATTTGAAAAATGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
842 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
19960397 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAATGTTTGATGAGGGATA-AGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* ** * *
19960460 CAATATCAGGGCCAAGTATGAGCTCCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* ** * * *
19960525 ATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCTGTGATGGTACCCCGACG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
19960590 AAGAAAAATGCGACACCAGCATATGCTCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTC
196 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * *
19960655 TAATCTTAGATTGGGAATGAACTTCGTATGCTTAGAATGGGAATGAACTCCGTATGCTTAAGTCA
261 -CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
19960720 ACCCATGAAATGAACGTGCGGGAGCTC-GACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
325 ACCCACGAAATGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * * * * * * *
19960784 GACCAGGTCCCCCTTTGCGTGCTGCCAATCCTACTACCACTACCCTCAGTCTGGTTTGATCTTAG
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAG
*
19960849 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCACTACGTC
454 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTC
*
19960914 GGCCAGAGAGATGGGATGCGCAAGCCGTGGAAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCT
519 GGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
19960978 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCT
583 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
19961043 TCACGTGAAGCTTCATGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
648 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* * * * *
19961108 GTTCAGGATTTTTCAGAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTT
713 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
19961173 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACC
778 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
19961238 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
843 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
19961291 TTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
19961356 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTCGGCCCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * **
19961421 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGACGATGGTGCCCCGGTG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * ** * * * *
19961486 AAGAAAAATGTGGCACCAGTACATGCCCTG-GCATAGCATGTGCTGTCGTAACCCTTGGTCCAGT
196 AAGAAAAATGCGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
19961550 CCAATCTTGGATTGGGAATGAACTCCATACGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTC
260 CC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** *
19961614 AACCCACGAAAGGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCGAGGATC
324 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * ** * * *** *
19961679 GGTCGGGTCCTCCTCTGTGTGTTGTTGATCCTGCTACTGCAACCCTCAGTCCAATCAGATCTTAG
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAG
* * *
19961744 ACTAGGACTGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTA
454 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCACTA
* * *
19961809 CGTCGACCAGAGACACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACA
515 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
19961874 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
580 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * **
19961939 CCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
645 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* *
19962004 ATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
710 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
19962069 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTG
775 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
19962134 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAAC
840 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
19962190 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAAGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
19962255 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGCACACAGCCCCCCTGGCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCCCCC-GGCCCCC
* * * ***
19962320 CCGATCG-CTGGAACCCAAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCTAACGATGGTGCCCC
128 CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC
* * * * * * ** *
19962384 AACGAAGCAAATTACGGCACCAGCACATGCCTGAGCCCAGCGTGTGCTATCGTAA-CC-C--T-C
192 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
19962444 GG-------T---CT--G-AT--A---CG-AT-CTTAGACTGGGAATGAACTCCATATCCCTAAG
257 GGTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
19962489 TCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
322 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * ** *
19962554 TCGGGCAGGTCCCCCTCTGCGTGCTACCGATCTTACTGTTGCAACCCTC-GATCTAGTCTGATCT
387 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCT
* * * *
19962618 TATACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTGGGCGGCCACTAC
451 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
* * * ** * * *
19962683 GCCGACCAGAGAGACGGGTTGCATAAACCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACAT
516 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
19962748 CTTCATATTTCTGCATGCCGATGCCATTTTGATGGCTTTTAAATTCATACTATGGTCCCTTAAGC
581 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
19962813 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTA
646 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
* * * * * *
19962878 CGGTTCAGGATTTTTTAAAATTTTTTCGGTAGAAGTTTTGTCCCCAAACTTGGTAGGCGGGATCC
711 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
19962943 TTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAAATCAAAGTGTACAACATTTTGTGA
776 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
19963008 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAAC
841 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
19963063 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * **
19963128 CAGTATAAGGGCCAAGTACTAGCACCCATCACACATCATGCGTGCACA-CCCCTTGGCCCCCTCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CC
* ** *
19963192 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGAC
130 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
** * * * * *
19963257 GAAGAAAAATGCGGCACCAGCACATGTTCGGGCCCAGCAAGTGCAGCCGCAACCCTCGATCCGAT
195 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
19963322 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATACCTAAGTC
260 CC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
19963387 AACCCACGAAACGAGCGTCCGGGCACCCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC
324 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
19963452 GATCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGTCGCAACCCTCATTCTGGTCTAATCTTAG
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAG
* * *
19963517 A-TAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGGGGGGCACA
454 ACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGGCACT
* * *
19963581 ACGTCGACTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
514 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
19963646 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCTTTAA
579 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
19963711 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
644 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
** * * * ** *
19963776 TGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAATTTTGAACCCAAACTTGGAAGACGTGAT
709 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
19963841 CCTTTTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
774 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
19963906 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-GACGAAC
839 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-CAAAC
* * * * *
19963963 CTGTAAAATCTTAAATGGTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGAGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
19964028 CAATATAAGGCCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCTCCAG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * *
19964093 ATCGTCGGAACTCCAATACCGCTGGTCAGGTTCTCCGGTGATGGT---GC-CTAG-G---C-A--
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * **
19964147 AAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTTGGTATGGTC
196 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
19964212 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
261 C-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
19964276 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGCGACGGGATACGCAAACCAGGGATCG
325 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
19964341 GTCGGGTCCCCCTCTGTGTGCTCCCAATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
390 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGA
*
19964406 CTGGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAAGCA
455 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGC-GG---GCA
* * * * *
19964471 CTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGAC
512 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
19964536 ACATCTTCATATTTCTGTGTGCCAATGCAATTTTTATGGCTTTTAAATTCATACAATGGTCCCTT
577 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
19964601 AAGCCTTCATGTGAAGTTACATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTT
642 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
19964666 TTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGTTTTGGCCCAAAACTTGGTAGGCGTG
707 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
19964730 ATCCTTGTATTTTTTTCGGCATGCAAAAAAAAATTCAGCAAAAAACTCAAAGTGTACAAGATTTT
772 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
19964795 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCGGCGAAC
837 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
19964854 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGTGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
19964919 CAATATAAGGGCCAAGTACCAGCACTCATCGTACATCATGTGCGCACA-CCACCCAG-CCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * *
19964982 ATCGTCGG-ACCCCAATGTCACCTGTCAAGTTCTCCGGTGATGCTTCGGCGATGGTGCCTCGACG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * *
19965046 AAGAGAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G--
196 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
19965103 -ATC-----C--GG--T----T-TG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
261 CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
19965151 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGTCGGGGATCGG
326 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * ** * *
19965216 TTGGCTCCCCCTCCGTATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTAATCTTAGAC
391 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGAC
* * * *
19965281 TGGGAATGAGCTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGTAGGAGGGCAGGCGGGCAC
456 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AAC--G-A-GCGGGCGGGCGGGCAC
19965346 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
513 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * **
19965411 CATGTTCATATTTCTGCATGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTA
578 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
19965476 AACCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
643 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * * *
19965541 TTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAG-TTTGGTCCCAAACTTGGTAGACATGA
708 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
19965605 TCCTTGTATTTTTGTTGGCATGCACAAAGAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTG
773 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
19965670 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
838 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
19965728 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * ** *
19965793 CAATATAAGGGCCAAGCACCAGCACCCATCGCACCTCAAATGCGCACACCAACCCCGG-CCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCC
* * * * * **
19965857 GATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGCTGATGCTCCGGTGATGGTGCCCCGGT
130 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
* * * * *
19965922 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGAAACCCTCGATTCGGT
195 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
19965987 CCAATCTTAGACTTGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCTGTATGCCTAAGTC
260 CC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
19966052 AACCCACGAAATGAGCGTGCAGGCGCACAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATT
324 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * * *
19966117 GGTTGGGTCCCCCACTGTGTGCTACTGATCCTGGTGCCGCAACTCT-AGGTCCGGTCTAATCTTA
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA-GTCTGGTCTGATCTTA
* * * * * * *
19966181 GACTAGGAATGAACTCCGTATGCCTAAGGCAACCAACGATACGAGCGAGTGGGCGGGTACTACGT
453 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGT
** *
19966246 CGGCCAGAGAGATAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
518 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
19966311 TCATATTTCTGTGTGCCAATGCCATTTTTATGGATTGCAAATTCATACAATGGTCCCTTAAGCCT
583 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
19966376 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCT
648 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
* * * *
19966441 GTTCGGGATTTTTTAAAATTTTTGCAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTT
713 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
19966506 GTATTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACC
778 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
19966571 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
843 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
19966624 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
19966689 CAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCGCCC-GACCCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * **
19966753 ATCGTCGGAACCCCAAT---GTC-ATC-GGTTAT---GT--T-CTCAGGCGATGGTGCCCCGGTG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * * * * *
19966807 CAGAAAAATACGACACCAGCACATACCCGAGCCCAGTATATGCTGTCGCAACCCTCGGTCTGGTC
196 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* **
19966872 CGATATTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
261 C-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
19966937 ACCCACGGAATAAACGTGCGGGCGCTC-GACTGGCCAAAGGGGCAGGATGCGCAAGTCGAGGATC
325 ACCCACGAAATGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* *
19967001 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAG
389 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAG
* * * *
19967066 ACTGGGAATGAACTCCCTATGCCTAGGCCAACCGATGAAACAAGCGGATGGGCGGGTAGGCGGGC
454 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGC--G--GGCGGGC
* * *
19967131 ACTACGTCGGCCAGTGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
511 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** * *
19967196 CACAGCTTCATATTTCTATGTGCCAATGCTATTTTTATGGCTTGAAAATTCATACAATGGTCCCT
576 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
19967261 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
641 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
19967326 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTCGGTAGACGT
706 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
19967391 GATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTT
771 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
19967456 TGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGCAGCAAAC
836 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
19967515 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTGGAGGTTTGATGAGGAATAAGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
19967580 CAATATAAGGGCCAAGTACCACCACCCATTGCACATCATGTGTGCACACCCCCCCGGCCTCCCCG
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * * * * *
19967645 ATCGCCGGAACCCCAATGTCGCCGGTTAGGTTCTCTGGCGATGCTCTGACGATGGAGCCCCGGCG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* *
19967710 AAGAAAAATGTGGCACCAGC-CAATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGG-
196 AAGAAAAATGCGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
19967768 -C--C-----C---G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
260 CCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
19967814 GCCCACGAAATGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
325 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * **
19967879 GTCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTTTGGTCCAATCTTAGA
390 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGA
*
19967944 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCA
455 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------G-CGGGCGGGCGGGCA
19968009 CTACG-CGGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
512 CTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
19968073 AACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
576 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
19968138 TAAGCCTTCACGTGAAGTTTCATGGCAAGACAAATCATTTTCTATTTTTCACGATTTTCAAAACT
641 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
** * * *
19968203 TTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGATGT
706 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
19968268 GATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
771 GATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
19968333 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAAC
835 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
19968394 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
19968459 CAATATTAGGGCCAAGCACCAGCACCCATCGCACCTCATGTGCGCACACCACCCCCGGCCCCCCC
66 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCC
19968524 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC-AG
130 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA-
* * *
19968588 TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
194 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
19968653 TTCAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGC
259 -TCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
19968718 CAACTCACGAAACGAGCGTGCGGG-TCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGAGGAT
323 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** ** * ** * **
19968782 CGATCGGGTCCCCCTCTGCGTGCTTACGATCCTGCTATCGCAACCTTTGGTCCGACCTGATCTTA
388 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTA
19968847 GACTGGGA
453 GACTGGGA
19968855 TGCGCAAGCC
Statistics
Matches: 7354, Mismatches: 921, Indels: 358
0.85 0.11 0.04
Matches are distributed among these distances:
869 7 0.00
870 101 0.01
871 3 0.00
872 1 0.00
873 474 0.06
874 617 0.08
875 11 0.00
876 29 0.00
877 702 0.10
878 81 0.01
879 153 0.02
880 117 0.02
881 10 0.00
882 4 0.00
883 5 0.00
884 276 0.04
885 7 0.00
886 3 0.00
887 4 0.00
888 199 0.03
889 111 0.02
890 12 0.00
891 405 0.06
892 563 0.08
893 124 0.02
894 151 0.02
895 936 0.13
896 676 0.09
897 35 0.00
898 8 0.00
899 528 0.07
900 490 0.07
901 23 0.00
902 109 0.01
903 230 0.03
904 3 0.00
905 94 0.01
906 52 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
Found at i:19964259 original size:25 final size:26
Alignment explanation
Indices: 19964216--19964267 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19964206 ATGGTCCGAT
19964216 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19964242 CTTAGACTG-GAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19964267 C
1 C
19964268 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19966030 original size:26 final size:26
Alignment explanation
Indices: 19965992--19966044 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19965982 TCGGTCCAAT
*
19965992 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19966018 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19966044 C
1 C
19966045 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19966906 original size:26 final size:26
Alignment explanation
Indices: 19966877--19966928 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19966867 TGGTCCGATA
19966877 TTAGACTAAGAATGAACTCCGTATGC
1 TTAGACTAAGAATGAACTCCGTATGC
**
19966903 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAAGAATGAACTCCGTATGC
19966929 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAAGAATGAACTCCGTATGC
Found at i:19968689 original size:26 final size:26
Alignment explanation
Indices: 19968660--19968710 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19968650 CGGTTCAATT
19968660 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19968686 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
19968711 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19970410 original size:26 final size:26
Alignment explanation
Indices: 19970374--19970426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19970364 TCAGTCTGAT
*
19970374 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19970400 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19970426 C
1 C
19970427 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19970593 original size:893 final size:886
Alignment explanation
Indices: 19968846--19971312 Score: 3454
Period size: 893 Copynumber: 2.8 Consensus size: 886
19968836 ACCTGATCTT
* *
19968846 AGACTGGGATGCGCAAGCCGAGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
1 AGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
19968911 CTACGTGCCAAT-CCAATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTA
65 CTGCGTGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
19968974 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACGTTTTGCGGTTCAGG
129 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTC-GG
* * ** * *
19969039 ATTTTTTAAAATTTTTTTGGAAGAAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTT
193 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTT
* *
19969104 TGTTGGCATGCACAAAAAAATGCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
258 TGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
19969169 AAAAGTGTGCCCATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTATAAAATCTCAAATGCT
322 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
19969234 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGTGAT-AGGAGGCCAATATCAGGGGCAAGTAC
387 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAAGG-GGCCAATATAAGGGCCAAGTAC
* * *
19969298 CAGCACCCATCACACATCATGTGCGCGCACGCCCCCCCAGGCCCCCTCGATCGTCGAAACCCCAA
451 CAGCACCCATCGCACATCATGT--GCGCAC-ACCCCCC--GCCCCC-CGATCGTCGGAACCCC-A
* * * ** * * *
19969363 TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGTTGATGGTGCCCCGACGAAGAAAAATACGACAC
509 TACCGCCAGTCAGGTTCTCCGGTGATGCTCCG-AGATGGTGCCCCGGCGAAGAAAAATACGGCAC
* * * * * * *
19969428 CAGCACGTGCTCGAGCCTAGCATGTGCTATCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGA
573 CAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGTTCAG-T-CGATCTTAGACTGGGA
* * * * **
19969493 ATGAACTCCATATGATTAGGCTGGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAATGAGCG
636 ATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCG
* * *
19969558 TACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCTCTCTCTG
701 TACGGGCGCTCAACCGGCCAGAGCGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * * * * *
19969623 CGTGCTGCCGGTCCTACTGCCGTAACCCTCGGTCTGGTCCAATCGTAGACTGGGAATGAACTCCG
766 CATGCTACCGATCCTACTACCGCAACCCTCAGTCCGGTCCAATCGTAGACTAGGAATGAACTCCG
* * * *
19969688 TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACATCGGCCAAAG
831 TATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACCACACCGGCCAAAG
*
19969744 AGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
1 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
19969809 TGCGTACCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTATGCCTTCACGTGAA
66 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
19969874 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTCGGAT
131 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGG-TTCGGAT
*
19969939 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGAAATGATCCTTGTATTTTTG
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTG
* *
19970004 TTGGCATGCACAAAAAATTCAGCTAAAAACTTGAAGTGTAGAAGATTTTGTGACCATTTGAAAAA
260 TTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
19970069 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
325 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
19970134 TAAGGCGGTGTGAGTTCTCGAGGTTTGACGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
390 TAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACCAG
19970199 CACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCATTACCGCCA
454 CACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCGATCGTCGGAACCCCA-TACCGCCA
* * *
19970264 GTCAGGTTCTCCGGTGATGCTCCAGAGATTGTGCCCCGGCGAAGAAAAATATGGCACCAACACAT
517 GTCAGGTTCTCCGGTGATGCTCC-GAGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACAT
* *
19970329 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGACCTC
581 GCCCGAGCCCAGCATGTGCTACCGCAACCCTC-GTTCAGTC-GATCTTAGACTGGGAATGAACTC
* **
19970394 CGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACCAGCGTGTGGGCG
644 CGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGGCG
** * * *
19970459 CTCAACCGGCCAGAGCGGTGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGCATGCTAT
709 CTCAACCGGCCAGAGCGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTAC
* * * * * *
19970524 CGATCTTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
774 CGATCCTACTACCGCAACCCTCAGTCCGGTCCAATCGTAGACTAGGAATGAACTCCGTATGCCTA
** * *
19970589 AGCCAACCGTTGAAACGAACGGGCGGGCGGGCACCACGCCGGCCAGAG
839 AGCCAACCGACGAAACGAACGGGCGGGCGGGCACCACACCGGCCAAAG
* *
19970637 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTT
1 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
19970702 TGCTTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCGTCACGTGAA
66 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
19970767 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGAT
131 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCG-GAT
* *
19970832 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTT
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTG
* * *
19970897 TTGGCATCCACAAATAATTCCAGCTAAAAACTCGAAGTGTACACA-ATTCTGTGACCATTTGAAA
260 TTGGCATGCACAAAAAATT-CAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAA
19970961 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
323 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
19971026 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATAGATAGGGGGCCAAAATAAGGGCCAAGTACC
388 TTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACC
* * *
19971091 AGCACCCATCGCACATCATGTGTGCACA-CCCCC-CCCCCCGATCGTCAGAACCCCA-A-TGCCA
452 AGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAACCCCATACCGCCA
* * * * *
19971152 -TC-GG---TCAGGT--T-CCCCGACGATGGTGCCACGGTGAAGAAAAATGCGGCACCAGCACAT
517 GTCAGGTTCTCCGGTGATGCTCCGA-GATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACAT
* * * * *
19971209 GCCTGAGCCCAGCATGTGCTCCCGCAACCCTTGGTTCGATTCGATTTTAGACTGGGAATGAACTC
581 GCCCGAGCCCAGCATGTGCTACCGCAACCC-TCGTTC-AGTCGATCTTAGACTGGGAATGAACTC
* *
19971274 CGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
644 CGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGT
19971313 TTTGGCCCCA
Statistics
Matches: 1416, Mismatches: 136, Indels: 52
0.88 0.08 0.03
Matches are distributed among these distances:
879 2 0.00
880 126 0.09
881 5 0.00
883 5 0.00
886 2 0.00
887 2 0.00
888 4 0.00
889 1 0.00
891 21 0.01
892 6 0.00
893 592 0.42
894 197 0.14
895 9 0.01
896 6 0.00
897 214 0.15
898 218 0.15
899 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (886 bp):
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGATT
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGT
TGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAACCCCATACCGCCAGTCA
GGTTCTCCGGTGATGCTCCGAGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTACCGCAACCCTCGTTCAGTCGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGGCGCTCAACC
GGCCAGAGCGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCT
ACTACCGCAACCCTCAGTCCGGTCCAATCGTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAACGGGCGGGCGGGCACCACACCGGCCAAAG
Found at i:19971292 original size:26 final size:26
Alignment explanation
Indices: 19971255--19971306 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19971245 CGATTCGATT
*
19971255 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
19971281 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
19971307 CTAAGTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:19972219 original size:390 final size:390
Alignment explanation
Indices: 19971473--19972241 Score: 1125
Period size: 390 Copynumber: 2.0 Consensus size: 390
19971463 GTAAAATCTC
19971473 AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
1 AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
19971538 AAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCTA
66 AAGTACCAGCACCCATCGCACATCA-GTGCACACACCCCCCAGCCCCCCGATCGTCGGAACCCCA
** *
19971603 ATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCA
130 ATGCCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCA
* * ** * *
19971668 CCAGCACATGCCTGAGCCCAGCATTTGCTGCCACAACCCTCGGTCCGGTCCGGTCTTAGACTGGG
195 CCAGCACATGCCCGAGCCCAGCATGTGCCACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGG
*
19971733 AATGAACTTCGTATGCCTAAGTCAACCCGCAAAACTAGCGTGCGGGTGCTCAGCCGGCCGAGGGG
260 AATGAACTCCGTATGCCTAAGTCAACCCGCAAAACTAGCGTGCGGGTGCTCAGCCGGCCGAGGGG
* * * *
19971798 CGGGATACGGAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGTTGTCGATCCTGCGTGTTGTCT
325 CGAGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCGTGTTGTCT
19971863 A
390 A
*
19971864 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
19971929 CAAGTACCTGCACCCATCGCACATCA-TGCACACACCCCCCGGCCCCCCCGATC-TCTGGAACCC
65 CAAGTACCAGCACCCATCGCACATCAGTGCACACACCCCCCAG-CCCCCCGATCGTC-GGAACCC
* * ** * *
19971992 CAATGCCGTCAATCAGGTTCTCTGGTGATGCTCCGGCGAT-GTGCCCCGATGAAGAAAAATACGG
128 CAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGG
* * *
19972056 CACCAGCACATGCCCGA-CCCATCATGTGCCACCATAACCCTCGGTCCGGTCTGATCTTAGACTA
193 CACCAGCACATGCCCGAGCCCAGCATGTGCCACCACAACCCTCGGTCCGGTCCGATCTTAGACTA
* *
19972120 GGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAA-TGAGCGTGCGGGTGCTCAGCCGGTCGGA
258 GGAATGAACTCCGTATGCCTAAGTCAACCCGCAAAACT-AGCGTGCGGGTGCTCAGCCGG-CCGA
* * ** *
19972184 GGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCT
321 GGGGCGAGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCT
19972242 ACTGCCGCAA
Statistics
Matches: 337, Mismatches: 36, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
388 1 0.00
389 94 0.28
390 107 0.32
391 61 0.18
392 74 0.22
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (390 bp):
AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCAGTGCACACACCCCCCAGCCCCCCGATCGTCGGAACCCCAA
TGCCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCCACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGTCAACCCGCAAAACTAGCGTGCGGGTGCTCAGCCGGCCGAGGGGC
GAGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCGTGTTGTCTA
Found at i:19977125 original size:522 final size:521
Alignment explanation
Indices: 19976180--19977187 Score: 1642
Period size: 522 Copynumber: 1.9 Consensus size: 521
19976170 GCGGGTGCTC
*
19976180 CGCCGGCCAGAGACACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
1 CGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
19976245 TCTTCACATTTCCACGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 TCCTCACATTTCCACGTGCCAATGCCAATTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
*
19976310 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTT
* * *
19976375 GCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTTATC
196 GCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATC
* * * * *
19976440 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTA
261 CTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAACTGTACAACATTTTGTA
*
19976505 GCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGCTACTGGCAGCAAGCCTGTAAAAT
326 G-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGCTACTGGCAGCAAACCTGTAAAAT
*
19976570 CTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGGGACAATATAAG
390 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGGGACAATATAAG
*
19976635 GGCCAAGTATCAGCACCCATCGCACATCATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAC
455 GGCCAAGTACCAGCACCCATCGCACATCATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAC
19976700 TA
520 TA
* *
19976702 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACA
1 CGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* ** *
19976767 TCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
66 TCCTCACATTTCCACGTGCCAATGCCAATTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
*
19976832 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTCTT-GAAACTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT-TTAGAAACTTTT
* * * ***
19976896 TGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGTTTCCAAACTTGGTAGACGTCAT
195 TGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCAT
** **
19976961 CCTTATATTTTTGTTGGCATGCACAAAAACTTTCAGCTAAAAAATTTAACTGTACAACATTTTGT
260 CCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAACTGTACAACATTTTGT
*
19977026 GATG-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
325 -A-GCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGCTACTGGCAGCAAACCTGTAAA
* *
19977090 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
388 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGGGACAATATA
*
19977155 AGGGCCGAGTACCAGCACCCATCGCACATCATG
453 AGGGCCAAGTACCAGCACCCATCGCACATCATG
19977188 TGCACACACA
Statistics
Matches: 447, Mismatches: 36, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
522 443 0.99
523 3 0.01
524 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (521 bp):
CGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCCTCACATTTCCACGTGCCAATGCCAATTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATC
CTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAACTGTACAACATTTTGTA
GCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGGGACAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACT
A
Found at i:19977363 original size:26 final size:26
Alignment explanation
Indices: 19977334--19977386 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19977324 ATGGTCCGAT
19977334 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
19977360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19977386 C
1 C
19977387 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19978239 original size:26 final size:26
Alignment explanation
Indices: 19978210--19978262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19978200 ATGGTCCGAT
19978210 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
19978236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19978262 C
1 C
19978263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19978903 original size:886 final size:884
Alignment explanation
Indices: 19976688--19981006 Score: 5609
Period size: 876 Copynumber: 4.9 Consensus size: 884
19976678 GACAAAACGA
19976688 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
19976753 TGGGTTTAGGTACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
66 TGGGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
* *
19976818 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * ***
19976883 TCTTGAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGTTTCCAAAC
196 TTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * ** * ** *
19976947 TTGGTAGACGTC-ATCCTTATATTTTTGTTGGCATGCACAAAAACTTTCAGCTAAAAAATTTAAC
260 TTGGTAGAC-ACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* ** *
19977011 TGTACAACATTTTGTGATGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGC
19977076 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGA
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGA
* *
19977140 TAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCCGA
453 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGA
* *
19977205 CCCCCCCGATCGCTGGAACCCTAATGCCGCAGGTCAAGTTCTCCGGCGATGGTGTCTCGGCGAAG
517 CCCCCCCGATCGCTGGAACCCTAATGCCGC-GGTCAAGTTCTCCGGCGATGGTGCCCCGGCGAAG
*
19977270 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATCTGCTTCTGCAACCCTCGATGGTCCGATC
581 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCTGCAACCCTCGATGGTCCGATC
*
19977335 TTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
646 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
19977400 CGAAACGAGCAG-GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGTAAGCCGGGGATCGGTCG
711 TGAAACGAGC-GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCG
* * *
19977464 GGTCCCCCTCTGCGTGC--T--A-CC-G-TA----ACCCTTAG-CTGGTCTGATCTTAGTCTGGG
775 GGTCCCCCTCTACGTGCTGTCGATCCTGCTATTGCACCCTTAGTCTGATCTGATCTTAGACTGGG
* * * * * *
19977517 AATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGG
840 AATGAACTCCATATACCTAAGCCAACCGACGAAA-TAA---GCAGGCGG
* * *
19977566 GCGGGCGGGCACTACGCCGGTC-GAGAGACGGGATGCGCAAGCCGTGAATCGATA-GGTGGTTGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** * *
19977629 TGGGTTTAGGCAGATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
* *
19977694 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
19977759 TTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACT
196 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
19977824 TGGTAGACAGGATCCTTGGATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTG
261 TGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* * * *
19977889 TACACGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
*
19977954 TAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
*
19978019 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCCGACCC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGACCC
* *
19978084 CCCCGATCGCTGGAACCCTAATGCCGCAGGTCAAGTTCTCCGGCGATGGTGTCTCGGCGAAGAAA
520 CCCCGATCGCTGGAACCCTAATGCCGC-GGTCAAGTTCTCCGGCGATGGTGCCCCGGCGAAGAAA
*
19978149 AATGCGGCACCAGCACATGCCTGAGCCCAGCATCTGCTTCTGCAACCCTCGATGGTCCGATCTTA
584 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCTGCAACCCTCGATGGTCCGATCTTA
*
19978214 GACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
649 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* *
19978279 AACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATTGGTCGGGTC
714 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTC
* * * *
19978344 CCCTTCTACGAGCTGTCGATCCTGCTATTGCTACCCTCAGTTTGATCTGATCTTAGACTGGGAAT
779 CCCCTCTACGTGCTGTCGATCCTGCTATTGC-ACCCTTAGTCTGATCTGATCTTAGACTGGGAAT
* *
19978409 GAACTCCATATACCTAAGCCAACCGACGGAATAAGTAGGCGG
843 GAACTCCATATACCTAAGCCAACCGACGAAATAAGCAGGCGG
19978451 GC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
19978515 TGGGTTTCGGCACATCCTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
66 TGGGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
*
19978580 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * *
19978645 TTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTGTTTCGGAAAGAGTTTTGGCCCCAAACT
196 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
19978710 TGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
261 TGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* * *
19978775 TACGAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATAGCTACTGTCAG
326 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
* * *
19978840 CAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTAGAGGTTTAATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
* * *
19978905 GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTAGCCC
456 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GACC
* * * *
19978970 CCCCCGATCGCCGGAACCCTAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGACAGTGCC
519 CCCCCGATCGCTGGAACCCTAATGCCG-CGGTCAAGTTCTCCGGCGA-----T---G---GTGCC
* * * * *
19979035 CCGACGAAGAAAAATGTGGCACCAGCACATGCCTGGGCCTAGCATGTGCTGTC-GTAACCCTC-A
572 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCT-TCTGCAACCCTCGA
* * *
19979098 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
636 -T--GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
19979163 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAACT
698 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
* * ** ** * *
19979228 GGGGATC-GACTGGGTCCCCCTTTGTGTGCTGTCGATCCTGCTGCTGCAACCCTTAGTGTGGTCT
763 GGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCCTGCTATTGC-ACCCTTAGTCTGATCT
* * * *
19979292 GATCTTAGACTGGCAATGAACTCCATATACCTAAGTCACCCGACGAAATAAGCAGACGG
826 GATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCGACGAAATAAGCAGGCGG
** * * * * * **
19979351 GCGGGCGGGC-GGACG--GG-CACTA-CGTCGGCCA-GAG--AGATG-GGATCGA-ACGGGTGGT
1 GCGGGCGGGCACTACGCCGGCCA-GAGAGACGG-GATGCGCAAGCCGTGGATCGATA-GGGTGGT
* *
19979406 AGGTGGGTTTAGGCACAT-CTCCATATTTCTACGTGCCAATGCCATTTTCATGGCTTGTAAATTC
63 AGGTGGGTTTAGGCACATCCT-CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
19979470 A-AACAATGCTCCCTTGAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
127 ATAA-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
19979534 ATGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCC
191 ATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
19979599 AAACTTGGTAGAC-CTGATCCTTGTA-TTTTTTTGGCATGCACCAAAAAATTTAGCCAAAAACTC
256 AAACTTGGTAGACAC-GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
19979662 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA-AGGCTA
320 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA-GCTA
* ** *
19979726 CTGGTAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGATGGTGTGAGTTCTCGAGGTTTGATG
384 CTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATG
* * *
19979791 AGGGATAGGGGGCCAATATAAGAGCCAAGTACTAGTACCCATCGCACATCATGTGCGCACACCCC
448 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * *
19979856 CCCGGCCCCCCCGATC-ATCGGAACCTTAATGCAGCTGGTCAAGTTCTCCGGCGATGGTGCCCCG
512 CCCGACCCCCCCGATCGCT-GGAACCCTAATGCCGC-GGTCAAGTTCTCCGGCGATGGTGCCCCG
** * *
19979920 TTGAAGAAAAATGCGGCACAAGCACATG-CTCGAGCCCAGCATGTGCTGTC-GCAACCCTCGTCT
575 GCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCT-TCTGCAACCCTCG-AT
* * *
19979983 GATCCGATCTTAGATTGTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
637 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
19980048 GTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGAGCGGGATGCGCAAGCCGGGG
702 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGG
* ** * * * *
19980113 ATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGTTGCAACCTGTGGTCCT-ATCCGATC
767 ATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTATTGCACCCT-TAGT-CTGATCTGATC
** * ** *
19980177 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
830 TTAGACTGGGAATGAACTCCATATACCTAAGCCAACCGACGAAATAAGCAGGCGG
* * * * *
19980232 GTGCG-GGGCACTACGACGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * ** * *
19980296 TGGCTTTAGGCACATCTTCACATTTCGGCAAGCCAATACCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
* *
19980361 AGTGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** *
19980426 TTTTGAAACTTTTGT--GGTTC-GGATTTTTCT-AAATTTTTTTAGAAGGAGATTTGGCCCCAAA
196 TTTTGAAACTTTT-TACGGTTCAGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*** * * * **
19980487 CTTGGTAGATGTGATCCCTGTATTTTTTTTGGCATGCAAAAAAAAATTCATCTTCAAACTCAAAG
259 CTTGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* *
19980552 TGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGC
* **
19980617 AGTAAACCTGTAAAATCTCAAATGCT-TTTGAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGA
389 AGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
* * * * *
19980681 TAGAGGGCTAATATAAAGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCACCGG
453 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGA
* * * * *
19980746 CCCCCCCGATCGCCGGATCCCCAATGTCGTCGGTCAGGTTCTTCGTCGATGCTCTGACGATGGTG
517 CCCCCCCGATCGCTGGAACCCTAATGCCG-CGGTCAAGTTC-TC--C---G----G-CGATGGTG
** * * **
19980811 CCCCGGTAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAATGCAACCCTCG
570 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCTGCAACCCTCG
* *
19980876 AACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
635 -A-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
19980941 CTAAGTCAACCCAAGAAACGAGTGTGCGGGCGCTCAGCCGGCCAAAGGCGCGAGATGCACAAGCT
698 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
19981006 G
763 G
19981007 CTGCAGCCCT
Statistics
Matches: 3030, Mismatches: 320, Indels: 163
0.86 0.09 0.05
Matches are distributed among these distances:
875 2 0.00
876 682 0.23
877 32 0.01
878 22 0.01
880 9 0.00
881 213 0.07
882 61 0.02
883 7 0.00
884 33 0.01
885 228 0.08
886 533 0.18
887 184 0.06
888 16 0.01
889 47 0.02
891 1 0.00
892 3 0.00
893 152 0.05
894 309 0.10
895 11 0.00
896 63 0.02
897 124 0.04
898 61 0.02
899 4 0.00
900 226 0.07
901 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
CCCGATCGCTGGAACCCTAATGCCGCGGTCAAGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAA
TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCTGCAACCCTCGATGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCC
CCTCTACGTGCTGTCGATCCTGCTATTGCACCCTTAGTCTGATCTGATCTTAGACTGGGAATGAA
CTCCATATACCTAAGCCAACCGACGAAATAAGCAGGCGG
Found at i:19979146 original size:26 final size:26
Alignment explanation
Indices: 19979110--19979162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19979100 CCAGTCTGAT
19979110 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
19979136 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
19979162 C
1 C
19979163 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19980020 original size:26 final size:26
Alignment explanation
Indices: 19979991--19980043 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19979981 CTGATCCGAT
* *
19979991 CTTAGATTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19980017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19980043 C
1 C
19980044 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19980917 original size:26 final size:26
Alignment explanation
Indices: 19980888--19980940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19980878 CCGGTCCGAT
19980888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19980914 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19980940 C
1 C
19980941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19981624 original size:26 final size:26
Alignment explanation
Indices: 19981595--19981647 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19981585 CTGATCCGAT
*
19981595 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19981621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19981647 C
1 C
19981648 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19983287 original size:905 final size:898
Alignment explanation
Indices: 19981512--19984721 Score: 4553
Period size: 905 Copynumber: 3.6 Consensus size: 898
19981502 TTCTCTGGCA
*
19981512 ATGGTGCCCCGTTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
1 ATGGTGACCCG-TGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* *
19981577 CCCTCGGTCTGATCCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
65 CCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
19981642 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCA
129 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * *
19981707 CAAGCCGGGGATCAGTCGAGTCCCCATCTGCGTGCTGCCGATCCTACTGCTGCAACCTGTGGTCC
194 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCT
* * * *
19981772 AGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGCAAACGAGCGGGGGG
259 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGC--GGGC
* * * * *
19981837 GGCGGGAGGGGGGGCACTACGACGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTG
321 GGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
19981902 GTAGGTGGCTTGAGGCACATCTTCACATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
386 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
19981967 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATCGTTTTCTACTTTTC
451 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
19982032 ACGATTTTTGAAAC-TTTTACGGTTCGGGATTTTTCTAAA-TTTTTTCAGAAGGAGA-TTTGGCC
516 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-TAAATTTTTTTCGGAAGGA-ATTTTGGCC
* * * * *
19982094 CCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAGAAAAAAATTCATCTTCAAACT
579 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC-TAAAACT
*
19982159 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTA
643 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
19982224 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGATGA
708 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
19982289 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCA
773 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
19982354 CCGACCCCCCCGATGGCCGGATCCCCAATGTCACCGGTCAGGTTCTCCGACGATGCTCCGACG
838 CCG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGACG
* * * * * * * * *
19982417 ATGGTGGCCCAGTGAAGAAAAATGTGGCACCAACATATGCCCGAGCCTAGCTTGTGCTGCCGTAA
1 ATGGTGACCC-GTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* * *
19982482 CCCTCGATGCGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCTTAGATTGGGAATGAACTCC
65 CCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
19982547 GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGGG
129 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * *
19982612 CAAGCTGGGGATCGGACGGCTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCT
194 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCT
* *
19982677 GGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGC
259 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-
* *
19982742 CAGGCGGGCGCGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
323 CAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
19982807 AGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
388 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * **
19982872 TACAATGGTCCCTTAAGCCTGCACGTGAAGTTTTATGGCAAGTTGACTCGTTTTCTATTTTTCAC
453 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
19982937 GATTTTTGAAACTTTTTACGGTTCGAGCTTTTTTAAAATTTTTTTGGGAAGGAATTTTGGCCCCA
518 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTTCGGAAGGAATTTTGGCCCCA
* * * *
19983002 AAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAACAATTCAGCTAAACACTCGA
582 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA-ACTCAA
* * *
19983067 AGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGCCTACTG
646 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19983132 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGAAGAGGG
711 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
19983197 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTACACACACCCTCCCC
776 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC
*
19983262 GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-CG--G-T-----G
840 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGACG
* * *
19983311 ATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAA
1 ATGGTGACCC-GTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* *
19983376 CCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
65 CCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * * *
19983441 GTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGATCAGTCGGCCAGAGGGGCGGGATGCG
129 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** ** * * * * **
19983506 CAAGCTGGGGATCGGTCGGGTCTACCTCTATGTGCTGCCAATCCTGCTGTCGCAACCCTCAGTCT
194 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCT
19983571 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GC
259 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
* *
19983629 AGGCGGGCGAGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
324 AGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
19983694 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
389 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
19983759 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCACG
454 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
19983824 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTTGGAAAGAGTTTTGGCCCCAAA
519 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAATTTTGGCCCCAAA
* * *
19983889 CTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAAGTCAAAG
584 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT-AAAACTCAAAG
19983954 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
648 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
19984019 AGCAAACCTGTAAAATCTCAAATGTTTTTTAAGGGGGTGTGAGTTCTCGATGTTTGATTAGGGAT
713 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * **
19984084 ATGGGTCCAATATAAGGGCCAAACACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGC
778 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GC
* * *
19984149 CCCCCCGATCGTCGGAACCCCAATGCCGTCGTTCAGGTTCTCCAACGATGCTCCGACG
842 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGACG
* * * * * **
19984207 ATGGTGACCCGACGAAGAAAAATGAGACACTAGCAAATGCCCGTGCCCAGCATGTGCTGTCGCAA
1 ATGGTGACCCG-TGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* * * *
19984272 CCCTCGGTTTGGTCTGATATTAGACTGGGAATGAACT-CGTATGCTTAGACTGAGAATGAACTCC
65 CCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * *
19984336 ATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTTAGCTGGCCAGAGGGGCGGGATGCG
129 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * **
19984401 TAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCATAACC-TTGGTCT
194 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCT
* * * * *
19984465 GATCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCGACTGACGAAACGAGCGGACGGA
259 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-
* * *
19984530 TATGG-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGCGG
323 CA-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
19984594 TAGGTGGGTTTAGGCACATCTTCATATTTCTCCCATGCC-ATGCCATGTTTTGTGGCTTGTAAAT
387 TAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCAT-TTTTATGGCTTGTAAAT
* * * *
19984658 TCA-ATCACTGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
450 TCATA-CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
19984722 CTATTTTTCA
Statistics
Matches: 2054, Mismatches: 215, Indels: 74
0.88 0.09 0.03
Matches are distributed among these distances:
884 4 0.00
885 294 0.14
886 220 0.11
887 1 0.00
888 2 0.00
890 1 0.00
891 1 0.00
894 338 0.16
895 127 0.06
896 85 0.04
897 1 0.00
899 1 0.00
900 1 0.00
901 1 0.00
902 102 0.05
903 270 0.13
904 34 0.02
905 565 0.28
906 6 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (898 bp):
ATGGTGACCCGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
CCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTTGGTCTGG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCAG
GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAATTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC
CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGACG
Found at i:19983423 original size:26 final size:26
Alignment explanation
Indices: 19983394--19983446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19983384 CCGGTTCGAT
19983394 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19983420 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19983446 C
1 C
19983447 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19986535 original size:26 final size:26
Alignment explanation
Indices: 19986506--19986558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19986496 CCGGTCCGAT
19986506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19986532 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19986558 C
1 C
19986559 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19988426 original size:26 final size:26
Alignment explanation
Indices: 19988388--19988440 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19988378 CTGGTCCGAT
* *
19988388 CTTAGGCTGGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
19988414 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
19988440 C
1 C
19988441 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:19988450 original size:986 final size:986
Alignment explanation
Indices: 19986532--19988453 Score: 2968
Period size: 986 Copynumber: 1.9 Consensus size: 986
19986522 ACTCCGTATG
* * * *
19986532 CTTAGATTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19986597 CAGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCAATCC
66 CAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * *
19986662 TACTGCTGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
131 TACTGCTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * *
19986727 CTAGTGGCCGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGCT
196 CGAGCGGCCGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
* **
19986792 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * * * *
19986857 CTTGTAAATTCATATAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
326 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
19986922 TCTATTTTTCATGATTTTTGAAACTTTTTCGGGTTCGGGATTTTTTAAAATTTCTTCGAAAGGAG
391 TCTATTTTTCATGATTTTCAAAACTTTTTCGAGTTCAGAATTTTTTAAAATTTCTTCGAAAGGAG
* * * * * *
19986987 TTTTGGCAACAAATTTGGTGGACGTGATCCTTGTATTTTTGTTGGTATGCAAAAAAAAATTCAGC
456 TTTTGGCAACAAACTTGGTAGACGTAATCCTTGTATTTTTATTGGCACGCAAAAAAAAATTCAGC
19987052 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
19987117 AACGGCTACTGGCAGTAAACCTGTAAAATCTGAAATGCCCTTTAAGGGAGTGTGAGTTCTCGAGG
586 AACGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCCCTGTAAGGGAGTGTGAGTTCTCAACG
* * * * *
19987182 TTTGATGAGGGATAGGGGGGCACTATAAGCACCAAGTACCAGTACCCATCTCACATCATGTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCAC
* * *
19987247 ACACCCCCTCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTTTCCGGCGATGC
716 ACACCCCCTCCGGCCCCCCCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* ** * *
19987312 TCCGACGATGGTGCCCCGACAAAGAAAAATGTGGTACCAGCACATGCCCGAGCCCAGCATGTGCT
781 TCCAACGATGGTGCCCCGACAAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * * * *
19987377 ACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAGTGAACTCCATTTGCTTAGACTGGGAAT
846 ACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTACATATGCTTAGACTAGGAAT
19987442 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAAGTACCATATATGGGCCAAGTACCAGCA
911 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAAGTACCATATATGGGCCAAGTACCAGCA
19987507 CTTGGTCCGAT
976 CTTGGTCCGAT
* * *
19987518 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
19987583 CAGCCAGAGGGGCGAGATGCACTAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
19987648 TGCTGTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCAAAA
131 TACTGCTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * * * *
19987713 CGAGCGGGCGGGCGGGCGGGCAGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
196 CGAGCGGCCGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
*
19987778 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
19987843 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
326 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
* * *
19987908 TCTATTTTTGATGATTTTCAAAACTTTTT-GTAGTTCAGAATTTTTTTAAATTTTTTC-AGAAGG
391 TCTATTTTTCATGATTTTCAAAACTTTTTCG-AGTTCAGAATTTTTTAAAATTTCTTCGA-AAGG
** * *
19987971 AGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTATTGGCACGCACAAAAACATTCA
454 AGTTTTGGCAACAAACTTGGTAGACGTAATCCTTGTATTTTTATTGGCACGCAAAAAAAAATTCA
*
19988036 TCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
19988101 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTGTAAGGGGGTGTGAGTTCTCAA
584 TTAACGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCCCTGTAAGGGAGTGTGAGTTCTCAA
**
19988166 CGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 CGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGC
*
19988231 ACACACCCCCTCTGGCCCCCCCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
714 ACACACCCCCTCCGGCCCCCCCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* *
19988296 GCTTCAACGATGGTGCCCCGGCAAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTG
779 GCTCCAACGATGGTGCCCCGACAAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTG
* * * * *
19988361 CTGCCGTAA-CCTTCGATCTGGTCCGATCTTAGGCTGGGAATGAACTACGTATGCTTAGACTAGG
844 CTACCGCAACCCTT-GATCCGGTCCGATCTTAGACTGGGAATGAACTACATATGCTTAGACTAGG
*
19988425 AATGAATTCCGTATGCCTAAGTCAACCCA
908 AATGAACTCCGTATGCCTAAGTCAACCCA
19988454 CGGAACGAGC
Statistics
Matches: 841, Mismatches: 92, Indels: 6
0.90 0.10 0.01
Matches are distributed among these distances:
985 6 0.01
986 835 0.99
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (986 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
TACTGCTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
CGAGCGGCCGAGCGGACGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTCAAAACTTTTTCGAGTTCAGAATTTTTTAAAATTTCTTCGAAAGGAG
TTTTGGCAACAAACTTGGTAGACGTAATCCTTGTATTTTTATTGGCACGCAAAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AACGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCCCTGTAAGGGAGTGTGAGTTCTCAACG
TTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCAC
ACACCCCCTCCGGCCCCCCCGATCGCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCAACGATGGTGCCCCGACAAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCT
ACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTACATATGCTTAGACTAGGAAT
GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAAGTACCATATATGGGCCAAGTACCAGCA
CTTGGTCCGAT
Found at i:19990790 original size:26 final size:26
Alignment explanation
Indices: 19990754--19990804 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19990744 CTGATTCGAT
19990754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19990780 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19990805 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19991672 original size:26 final size:26
Alignment explanation
Indices: 19991636--19991688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19991626 CCGATCCGAT
*
19991636 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19991662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19991688 C
1 C
19991689 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19992565 original size:26 final size:26
Alignment explanation
Indices: 19992536--19992585 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19992526 CTAGTCCGAT
19992536 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19992562 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19992586 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19993077 original size:904 final size:898
Alignment explanation
Indices: 19990134--19993636 Score: 4013
Period size: 882 Copynumber: 4.0 Consensus size: 898
19990124 CTGTATGCCT
*
19990134 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
19990199 CATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19990264 ATGACTCGTTTTCTATTTTTCATAATTTTTGAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAG-GATTTTTTAAAATTTT
* * *
19990329 TTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAA
195 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
19990393 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATT
260 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATT
* * * * *
19990458 TCAGAAACATTAATGGCTCCTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTG
324 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
19990523 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAAGGTCAAGTACCAGCAACCATCGCAC
389 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
19990588 ATCATGTGTTCACACCCCCACCGGCCCCCCCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTC
453 ATCATGTGTGCACACCCCC-CCGG-CCCCCCGATCATCGGAACCC-AATGCCGCCGGTCAGGTTC
* * * * * * *
19990653 T-TCGGCGATGCTCCAGCGATGGTGCCTCGGTAAAAAAAAATACGACACCAGCACATGCCCGAGC
515 TCT-GGCGATGCTCGA-TGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGC
* * *
19990717 CCAGCATGTGCTGCTGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCT
578 CCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
** *
19990782 TAGACTGGGAATGAACTCCGTATA-CCTAAGTCAACCCACGAAACAAGCGTGCGAATGCTCAGTC
643 TAGACTGGGAATGAACTCCGTA-AGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCC
* * * * * * *
19990846 GGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTGTTGCCAATCCT
707 GGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCT
* * * * *
19990911 ACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAAC
772 ACTGCCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ***
19990976 CGATGAAACGAGCGGGCGGGCGAGC-GG-A--AACAACGCCGGCCAGAGAGACGGGATATTC
837 CGATGAAACGAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
19991034 AAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCACTGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
19991099 CATTTTTATGGCTTGTAAATTCATGCAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19991164 ATGACTCGTTTTCTATTTTTC--G-----TG--A--GTTT-C-G--A-AACTTTTTAAAATTTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGGATTTTTTAAAATTTTT
* *
19991213 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAA
196 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
* *
19991278 AAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATT
260 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATT
* *
19991343 TTAGACACTTTAATGGCTACTGGCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
324 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
19991408 AGTTCTCCAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCATCTACCAGCACCCATCGCAC
389 AGTTCTCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
19991473 ATCATGGGTGCACA-CCGCCTGGCCCCCCGATCGGT-GGAACCCCAATGCTGCTGGTCAAGTTCT
453 ATCATGTGTGCACACCCCCCCGGCCCCCCGATC-ATCGGAA-CCCAATGCCGCCGGTCAGGTTCT
* ** * * * * * * *
19991536 CCGATGATACTCCGATGATGGTGCCCCAATGAAGAAAAATGTGGCACCAGTAAATGCTCGAGCCC
516 CTGGCGATGCT-CGATGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
* * *
19991601 AGCATGTGCTGTCGCAACCCTCTA-TCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTT
580 AGCATGTGCTGCCGCAACCCTC-AGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
19991665 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTGCTCAGCCGG
644 AGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGG
* * * * * * ***
19991730 CCATA-GGGCCGGCATGCGTAAGCCGGGGATCGGTCGGGTCTCCCTCTATGTACGGTTGATCCTA
709 CCAGAGGGGCAGG-ATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTA
* ** * * * *
19991794 C-GATCATAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCTGTATGCCAAAGCCAAC
773 CTG-CCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
19991858 CGATGAAAC-AA---GCGGGCAGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGC
837 CGATGAAACGAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
19991916 AAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
19991981 CATTTTTGTGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
19992046 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTTGGGATTTTTTAAACTTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTAGGATTTTTTAAAATTTT
* *
19992111 TTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
195 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19992176 AAAAATTCGGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTT
260 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTT
* *
19992241 CAGACACTTTAATTGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
19992306 GTTCTCGAGGTTTGATGAGGGATATAGAGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
19992371 TCATGTGCGCACACCCTCCCCGGCCCCCTCAATCATCGGAACGCCAATGCCGCCGGTCAGGTTCT
454 TCATGTGTGCACACCC-CCCCGGCCCCC-CGATCATCGGAAC-CCAATGCCGCCGGTCAGGTTCT
* *
19992436 CTGGCGTTGCTCTGATGATTGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
516 CTGGCGATGCTC-GATGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
*
19992501 AGCATGTGCTGCCGCAACCCTCAGTCT-AGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
580 AGCATGTGCTGCCGCAACCCTCAGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
19992565 AGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAAAAAGCGTGCGGGCGCTTAGCCGG
644 AGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGG
*
19992630 CCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTAC
709 CCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTAC
** * * *
19992695 TGCCGCAACCCTCAATCCAATCTAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCG
774 TGCCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ***
19992760 ACGAAACGAACGGGCGGGCGGGCGGGCAGGCACTACGTTTGCCAGAGAGACGGGATGCGC
839 ATGAAACGAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
19992820 AAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGACACATCTTCATGTTGCTGCCTGCCAATGC
1 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
19992885 CATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
19992950 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTAGGATTTTTTAAAATTTT
* *
19993015 TTCAGAAGGAGTTTTGGCCCCTAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
195 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *** * ** * * *
19993080 AAATACTTGGCAGC--AAACCTTTTA--G-AC-A-CTTTAATGGCTA-CTGAAAGCAAA-----C
260 AAA-AATT--CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA--AAAGTGTCC
* * * * ** * ** * * * *
19993132 C-TGT-A-A-AATCTAAATTGCT-CT-----TTAA---G-GAGGTGT--GA-G-T-TTT--CGAG
320 CATTTCAGACACT-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
19993176 GTTTGA----T-GAGG---GAT-A--G---GGGGCCAATATAAGGGCCAAGTACCAGCACCTATC
384 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
19993227 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGACCGTCGGAACCCCAATGCCGTCGGTCAGG
449 GCACATCATGTGTGCACACCCCCCCGG-CCCCCCGATCATCGGAA-CCCAATGCCGCCGGTCAGG
** * * * * * ** *
19993291 TTCTC-CCCGAAAGCTCTGACGATAGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCA
512 TTCTCTGGCG-ATGCTC-GATGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCG
* * * * *
19993355 AGCCCAGCATGTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAA
575 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
19993420 GCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
640 GCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG
* * * *** * * * *
19993485 TCGACCAAAGGGATGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATC
705 CCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATC
* * * ** *
19993550 CTACTGCTGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCG
770 CTACTGCCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
19993615 ACTGATGAAACGAGCGTGCGGG
835 ACCGATGAAACGAACGGGCGGG
19993637 TGCTCAGCCG
Statistics
Matches: 2233, Mismatches: 312, Indels: 157
0.83 0.12 0.06
Matches are distributed among these distances:
858 2 0.00
859 327 0.15
860 8 0.00
861 49 0.02
865 1 0.00
867 1 0.00
868 3 0.00
871 4 0.00
872 1 0.00
876 7 0.00
878 10 0.00
879 3 0.00
880 1 0.00
881 8 0.00
882 453 0.20
883 40 0.02
884 51 0.02
885 185 0.08
886 2 0.00
887 3 0.00
888 1 0.00
889 5 0.00
891 2 0.00
892 3 0.00
893 14 0.01
894 2 0.00
895 3 0.00
896 2 0.00
897 135 0.06
898 60 0.03
899 91 0.04
900 445 0.20
901 13 0.01
902 2 0.00
903 1 0.00
904 284 0.13
905 9 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGGATTTTTTAAAATTTTT
TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGTGCACACCCCCCCGGCCCCCCGATCATCGGAACCCAATGCCGCCGGTCAGGTTCTCTGGC
GATGCTCGATGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGG
GGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTACTGCCGCA
ACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
GAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
Found at i:19993710 original size:159 final size:159
Alignment explanation
Indices: 19993421--19993774 Score: 435
Period size: 159 Copynumber: 2.2 Consensus size: 159
19993411 ACTCCGTAAG
* * * *
19993421 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** *
19993486 CGACCAAAGGGATGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGACCAAAGGGACAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
* *
19993551 TACTGCTGTAACCCTTG-GTCCGA-TCCGAT
131 TACTGCCGTAACCCTCGAG--CGAGTCCGAT
* ** *
19993580 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACTGATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *** * * * * *
19993645 CGGCTGGAGGGGCAGGATGCGCAAGCTGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTATCGATC
66 CGACCAAAGGGACAGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTACGTGCTACCGATC
*
19993709 CTACTGCCGTAACCCTCGAGCTAGTCCGAT
130 CTACTGCCGTAACCCTCGAGCGAGTCCGAT
* *
19993739 CGTAGACTGGGAATGAACTCCGTATGCCTAGGCCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
19993775 TCGACGTAAC
Statistics
Matches: 166, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.02
159 162 0.98
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCAAAGGGACAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
TACTGCCGTAACCCTCGAGCGAGTCCGAT
Found at i:19994483 original size:26 final size:26
Alignment explanation
Indices: 19994454--19994503 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19994444 CTAGTCCGAT
19994454 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19994480 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19994504 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19995376 original size:26 final size:26
Alignment explanation
Indices: 19995347--19995399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19995337 CCGGTTCGAT
19995347 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
19995373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
19995399 C
1 C
19995400 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:19996225 original size:26 final size:26
Alignment explanation
Indices: 19996187--19996239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19996177 CATGTCTGAT
*
19996187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19996213 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19996239 C
1 C
19996240 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19997126 original size:26 final size:26
Alignment explanation
Indices: 19997088--19997139 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19997078 CATGTCCGAT
* *
19997088 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCATATG
19997114 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
19997140 TCTAGGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19998023 original size:26 final size:26
Alignment explanation
Indices: 19997994--19998046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19997984 CTGGTCTGAT
*
19997994 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19998020 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19998046 C
1 C
19998047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19999757 original size:26 final size:26
Alignment explanation
Indices: 19999728--19999780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19999718 CTCGTCCGAT
* *
19999728 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19999754 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19999780 C
1 C
19999781 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20000667 original size:25 final size:26
Alignment explanation
Indices: 20000633--20000684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20000623 CTGGTCCGAT
20000633 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20000658 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20000684 C
1 C
20000685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20001132 original size:904 final size:901
Alignment explanation
Indices: 19998895--20011475 Score: 16015
Period size: 901 Copynumber: 14.0 Consensus size: 901
19998885 CCGGTCCAAT
* *
19998895 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **
19998960 CGG-CAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCAAG-CCCCCTTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCC-TCTGCGTGCTGCCGATC
* * * * ** *
19999023 CTGCTACTGTAACCCTCAGTCCGGTCCAATCTTAGACTATGAATGAACTCTGTATGCCTAA---A
129 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
19999085 A-CAATG-AACGAG-GGGCGTC-TGC-GG-GGGCA--A-ATC--CCAGAGA-AC-GGATG-GCAA
194 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
19999136 ---GTGGATCG-TAGGGT-GTAGGTGGGTTTAGGCAC--GTTCATATTTTCGTGC--GGCAATGC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTC-TGCATGCCAATGC
*
19999192 C-TTTTTATGGCTTGTAAA--CATACAATGG---CTTAAGCCTTCACATGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
19999251 ACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
19999316 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-AA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
19999380 AAAACATTCAGGTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
517 AAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
19999445 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGA
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * **
19999510 GGGTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGAGCCAAGTATGAGCACCCATCGCA
646 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
19999575 CATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCGATGCCG-C---C-GG---T
711 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
19999631 -CA-AG-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCTCGAGCCC
776 CCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
19999693 AGCATGTGCTGCTGCAACACTCGGTCTC-GTCCGATCTTAGACTGGGAATGAACTTCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19999754 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19999819 CGGCCAGAGGGGTGGGATGCGCAAGGCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTACGGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
19999884 TGCTGCCGCAACCCTCGGTCTGATCTGATCTCAGACTGGGAATGGACTCCGTATGCCTAAGCTAA
130 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * ** *
19999949 ACGACGAAACGAGCGGGCGGACCAGCGGGCGGGCACTACGCCGGTCAAAGAGACGGGATGCATAG
195 CCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
20000014 GCCATGGATCGA-GGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20000078 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20000143 GACTCGTTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTT
389 GACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* * *
20000207 TTCGGAAAGAATTTT-GCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20000271 AAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
20000336 TAAGACACTTTAATGGTTACTGGCAGAAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTA
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20000401 AGTTCTCAAGGTTTGATGAGGGATAGAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
647 AGTTCTCAAGGTTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
20000466 TATCATGTGCGCACAGCCCCCCCGGCCCCCCTGATCGTCGGAACCCTAATGCCGTCGGACAGGTT
711 CATCATGTGCGCACA-CCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * ** * * *
20000531 CTCCAGAGATGCTCCGACGATGGTGCGCTGAATAGGAGAAATGCGGCACCAACACATGCCCGAGC
774 CTCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
20000596 CCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCATATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
20000658 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
** * ** * * *
20000722 CCGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCAGTCGGGTCCCTTTTTGTGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
20000787 CTGCTACCGCAACCCTCAGTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20000852 ACCGACGAAATGAGCGGGCGTGCGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGTGCA
194 ACCGACGAAACGAGCGGGCG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20000917 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATACCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20000982 ATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20001047 C-ACTCATTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
*
20001111 TCGGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
* *
20001176 AAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20001241 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20001306 AGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20001371 ATCATGTGCGCACACCCCCCCGGCCCCCACGATCGTCGGTACCCTAATGCCATCGGCCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * ** * * *
20001436 CTGGCGGTGCTTTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCATCAACACATGCCCGAGCCC
776 CCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
20001501 AGCATGTGCTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
20001562 CTTAGATTGGGAATAAACTCTATATGCTTAGACTATGAATGAATTCTATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAA--C----T-C-----C-------G-------TATGCCTAAGTCAACCC
* * * * * * *
20001627 ACGAAACGAGCGTACGGGCGCTCAACCTGCCAGAGGGGCGGGATGCGTAAGTCAGGGATCGACCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCG
* * * ** * *
20001692 AGTCCCCCTCTGCATGCTGCCGATCTTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGG
104 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGG
* * *
20001757 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCTGGAGGGCACTAA
169 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTAC
* * *
20001822 GCCGACCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
233 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
20001887 CTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
298 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
20001952 ATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTA
363 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
20002017 CGGTTTGGGATTTTTTAAAAATTTTTT-TGAAGGAGTTTTGGCCCC-AACTTGGTAGACGTTATC
428 CGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20002080 CTTGTATTTTTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCG
492 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
20002145 ACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCGAACCTGAAAAAT
557 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** *
20002210 CTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAG
622 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
20002275 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGGA
687 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGA
* * * *
20002340 ACCCCAA---CGTC--AC-CG--AT-CAG-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAAT
751 ACCCCAATGCCGTCGGTCAGGTTCTCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
20002394 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
816 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
20002459 ACTGGGAATGAACTCCGTATG
881 ACTGGGAATGAACTCCGTATG
* * *
20002480 CTTATACTGGAAATGAACTCCGTATGCTTAGACTGGGAATCAACCCACGAAACGAGCGTGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAACCCACGAAACGAGCGTGCGGGC
* ** * * * * *
20002545 GCTCAGCCGGCCAGAGGGGCAGTTTGTGCAAGTCGAGGATCGATCGGGTCCCCCTCTGTGTACTG
59 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTG
** * * * * *
20002610 TGGATTCTGCTGCCGCAACCCTC-GAACTTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCC
123 CCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* *
20002674 GAAGCCAACCGACGAAACGAGTGGGAGGACGGGCGGGCGGACTAGTCGGGGGGCACTACGCCGGC
187 TAAGCCAACCGACGAAACGA--GCG-GG-C-GGCGGGCGG----G-C---GGGCACTACGCCGGC
*
20002739 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCAT
239 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
20002804 ATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCAC
304 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
20002869 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
369 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* *
20002934 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-TGTGGTAGACATGATCCTTGTA
434 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTA
* ** * * *
20002998 TTTTTTTTGGCATGCACAAAAAAGGTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGTCCACT
498 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
20003063 CGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAA
563 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
20003128 TGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAA
628 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
20003193 GTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGACCCCCCGATCGCCGAAACCCCAA
693 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAA
* * * * * *
20003256 TGTCATCGGTCAGG-T-T-C-----T-CT--AACGATGCTGCCCCGGCGAAGAAAAATGCAGCAC
758 TGCCGTCGGTCAGGTTCTCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
20003310 CAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGTGA
823 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
20003375 ATGAAATCTGTATG
888 ATGAACTCCGTATG
* * *
20003389 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * * *
20003454 CGGCCAGAGAGGCGGGACACGCATCCCGGGGATCAGCCGAGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
20003519 TGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGA
130 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
20003584 CCGATGAAACGAGCGTGCGTGCGGGCGGACGGGCACTACGTCAGCCAGAGAGATGGGATGCGCAA
195 CCGACGAAACGAGCGGGCG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * *
20003649 GTTGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTG-AGTGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
*
20003713 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20003778 CGACTCGTTTTCTATTTTTCACGATTTTCGAAAATTTTTGA-GGTTCGGGATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTT
* * * * * * *
20003842 TTTGGAAGGAGTATTGGCCCCAAACATGGTAGACATGATCCTTCTATTTTTGTTTGCATGAACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
20003907 ATAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20003972 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAAGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20004037 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCAC
647 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** *
20004102 ACCATGTACGCACACTCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
20004167 TC-GTA-ATACACCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACGTGCCCGAGCC
776 CCAG-AGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * * * * *
20004230 CAGTATGTGCTGCCGCAATCCTTGATCCGATCTGATCTTACATTGGGGATGAACTCCGTAAG
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * *
20004292 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20004357 AGGCCAGAGGGGCAGGATGCACAAACCGGGGATCAATCGGGTCCCCCTTTGCGTGCTGCAGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
20004422 TGCTGTCATAA-CCTCGATTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTC-AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20004485 ACCGACGAAACGAGCGGGCGGC---CGGGCGTGCACTGCACCGGCCAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
20004547 CCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20004612 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAA-A-
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
20004675 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* *
20004739 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
20004804 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
20004869 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
20004934 GTTCAT-GAGGTTTCATGAGGGATACGGGGCCAATATATA-GGCCAAGTACCAGCACCCATCACA
648 GTTC-TCAAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCA
* * * ** *
20004997 CATCATTTGCCCACACCCCCTCGGTCCCCCCGATCACCGGAACCACAATGCCGTCGGTCAGGTTC
711 CATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
20005062 TCCGGTGGTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGGC
775 TCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
20005127 CAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20005189 CTTAGACTAGGAATGAACTCTGTATGCCTCAGTCAAGCCATGCAACGAGCGTGCAGGCAG-TCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
* * **
20005253 CCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTATGTGCTG-CGAAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCG-AT
* * * ** * ** **
20005317 CTTGTTGCCGTAACCCTCCCTTTGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
20005382 AACCGACGAAAC--GCGGGCAGG-GGGTGGGTGGGCACTATGTCGGCCAGAGAGACAGGATGCGC
193 AACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
20005444 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACACCATAATATTTCTGCATGCCAACGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
20005509 CATTTTTATGGCTTTTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
20005574 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
20005639 TTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGAATTTTAGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
20005704 AACAATGT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
20005768 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
20005833 GAGTTCTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
646 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
20005898 GATCATTTGCACACACCCCCCTGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
711 CATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
20005963 TCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAATTGCGGCACCAGCACATGCCCGAGGC
775 TCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
20006028 TAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * * *
20006090 CTTAGACTGGGAATGAACTCTGTATGGCTAAGTCAAGCCATTAAACGAGCATGTGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
20006155 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
20006220 TACTGCTGCAACCCTCAGTCTGATCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAA
130 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
20006285 CCGACAAAACGAGCGGGGGGGCAGGCGGG-GGGTGGGCACTACGCTAGCCAGAGAGACGGGATGC
195 CCGACGAAACGAGC----GGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
20006349 ACAAGCCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * * *
20006414 GCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTTACGTGAAGTTCCAAGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20006479 AGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTAAAAAA
385 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* * * *
20006543 TTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCA
449 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
20006608 CAAAAAAATTCAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCC
514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* ** *
20006673 ATTTCAGACACTTTAGTGGCTACTGTTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
579 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
20006738 GTGAGTTCTCGAA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
644 GTGAGTTCTC-AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
20006802 GTAGATCATGTGC-CACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCAAT-AGTCAG
708 GCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCC-GTCGGTCAG
* * * *
20006864 GTTCTCCGGCGATGCTCCGACCG-TGGTACCCCGACGATGAAAAATGCGGCACCAGCACATGCCC
771 GTTCTCCAGAGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
20006928 GAGCCCAGCATGTGCTGCCGTAAGCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTA
835 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
20006993 TG
900 TG
* * * *
20006995 CTTAGTCTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20007060 CGGCCAGAGGGGCAGTATGCGCAAGCCGGGGATCGGCCGGGTCCCCTTCTGCATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
20007125 TGCTGCTGCAACCCTC-GATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * **
20007188 ACTGACGAAATGATC--G-GGCGGGCAGACGGGCACTGCATCGGCCAGAGAGACGGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
20007250 GCCGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTACGTGCCAATACCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
20007315 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
20007380 GACTCGATTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-AGGATTTTTTAAAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* *
20007444 TCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20007509 AAAATTCAGCTCAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20007574 TAGACACTTTAATGGCTCCTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20007639 GTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
20007704 TCATGTGCGCACA-GCCCCCGGCCCCCCCATCG-CTGGAACCCCAATGTCGTCGGTCAGGTTCTC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** *
20007767 C-GACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCC
777 CAGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
20007831 AACATGTGCTGCCGCAACCCTCGATTCCGGTCCGATCTTAGACTGGGAATGAATTTCGTATG
841 AGCATGTGCTGCCGCAACCCTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
20007893 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCGA-GAAACGAGCGTGTAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
20007957 CCGGCCAGAGGGGCAGAATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTACCTGCTATCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
20008022 TTGCTGCCGTAACCCTC-GATCCGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * * *
20008086 AACTGACGAAACAAGCGGGTAGGCGGGTGGGAGGGCACTACGCCGACCCGAGAGACGGAATGTGC
193 AACCGACGAAACGAGCGGG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
20008151 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
20008216 CATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
20008281 ACGACTCGTTTTCTGTTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTGAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* **** * *
20008346 TTTGGAAATCCTTTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTTGGCATGCCC
452 TTCGG-AA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
20008411 AAAACAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTG-CCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
20008475 TTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATGCACTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
20008540 CGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCAC
645 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * * * *
20008605 AGATCATGTGCGCATACCCCCCTCCGACCCCCCCGTTC-ACCGAAACCCAATGTCGTTGGTCAGG
710 ACATCATGTGCGCACA-CCCCC-CCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * *
20008669 TTCTCCTGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGA
772 TTCTCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * ** * * *
20008734 GCCCTGCATGTGCTGTCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAATTTCGTATG
837 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20008799 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
20008864 CGGCCTGTGGGGCGGGATGCGAAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
20008929 TACTACCGTAACCATCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20008994 CCGACGAAACGAGCGGGGGGACGGGCGGTCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAA
195 CCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
20009059 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20009124 TTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
20009189 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAACTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * ** * *
20009254 CGGAACGATTTTTGGCCCCAAACTTACTAGACGTGAGCCTTGTATTTTCGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
20009319 AAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20009384 AGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20009449 TTCTCGAGGTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGTACAT
649 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * * *
20009513 CGTGTGCGCACA--CCCCCGGCCTCCCCGATCGCCAAAACCCTAATGTCATCGGTCAGGTTCTCC
714 CATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * **
20009576 AGTGATGCTCCGGCAATGGTGCACCGACGAAGAAAAATACGGCACCAGCACATGCCAAAGCCCAG
778 AGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
20009641 CATGTGCTACCGCAACCATCGGTCCAGTCCGATCTTGGACTGAGAATGAACTTCGTATG
843 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20009700 CTTAGATTGGGAATGAACTTCGTATGCCTACGTCAACCCACGAGACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20009765 CGGCCAGAAGAGCGGGATGTGCAAGTCAGGGATCTGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
20009830 TGCTACTGCAACCCTC-GATCTGGTCTAA-CGTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 TGCTGCCGCAACCCTCAG-TCTGGTCCAATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
20009893 AACTGATGAAACGAGCGGGGGGGCGAG-GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGT
193 AACCGACGAAACGAGC-GGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
20009957 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
20010022 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * **
20010087 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTCCTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* **
20010152 TTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACACGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20010217 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20010282 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20010347 AGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGAA
647 AGTTCTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
20010411 CATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCATCAGAACCCCAATGCCGCCAGTCATGTT
711 CATCATGTGCGCACACCCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *** *
20010476 CTCTAGTGATGGT--GAC-----T---CTG-CGAAGAAAAATGCGATGCCAGCACATGCTCGAGC
774 CTCCAGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
20010530 CCAGCATGTGCTGTCACAACTCTTGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20010593 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20010658 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGATCGGTCAGGTCCCCCTCTGTGTGCTTCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * ** * *
20010723 TTGCTGTTGCAACCGTCAAT-TGGGTCGGATCTTAGAGTGGGAATGAACTCTGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
20010787 AACCGACGGAACGAGC--G-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCA
193 AACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
20010849 AGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20010914 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCCTTCACGTGAGGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20010979 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* ** ** * * *
20011044 TTGGAAATAGTTTTTCCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTTGGCATGCAAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* ** *
20011109 AAAAATTCAACTAAAAACTTAAACTGTACAAGA-TTTGTGACCATTTGAAAAAA--G--------
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20011163 T--G------TAATGGATACTGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTC
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * *
20011220 AGTTCTCTTGGTGTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * ** *
20011285 ATCATTTGCGCACA-CCCGCTGGCCCCCCTAATCGTCAAAACCCCAATGCCGCCGGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* *
20011349 CC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGGGCC
776 CCAGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * *
20011413 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATCAACGCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
20011475 C
1 C
20011476 ATAAGCCAAA
Statistics
Matches: 10287, Mismatches: 1187, Indels: 473
0.86 0.10 0.04
Matches are distributed among these distances:
859 64 0.01
860 91 0.01
861 7 0.00
863 2 0.00
864 3 0.00
865 6 0.00
866 5 0.00
867 1 0.00
868 2 0.00
869 2 0.00
870 12 0.00
871 38 0.00
872 5 0.00
873 126 0.01
875 5 0.00
876 2 0.00
877 5 0.00
878 2 0.00
879 1 0.00
881 14 0.00
882 105 0.01
883 4 0.00
884 14 0.00
885 16 0.00
887 10 0.00
889 1 0.00
890 685 0.07
891 393 0.04
892 58 0.01
893 208 0.02
894 116 0.01
895 4 0.00
896 372 0.04
897 783 0.08
898 387 0.04
899 356 0.03
900 445 0.04
901 1017 0.10
902 218 0.02
903 650 0.06
904 770 0.07
905 813 0.08
906 460 0.04
907 563 0.05
908 15 0.00
909 145 0.01
910 21 0.00
911 230 0.02
912 234 0.02
914 1 0.00
915 3 0.00
916 2 0.00
918 121 0.01
919 1 0.00
920 1 0.00
921 1 0.00
923 1 0.00
924 1 0.00
926 3 0.00
929 232 0.02
930 361 0.04
931 63 0.01
932 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGA
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20001565 original size:26 final size:26
Alignment explanation
Indices: 20001536--20001614 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
20001526 CTGATCCGAT
*
20001536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20001562 CTTAGATTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
** * *
20001588 CTTAGACTATGAATGAATTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20001614 C
1 C
20001615 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20002483 original size:26 final size:26
Alignment explanation
Indices: 20002454--20002519 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
20002444 CCGATCCGAT
20002454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20002480 CTTATACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20002506 CTTAGACTGGGAAT
1 CTTAGACTGGGAAT
20002520 CAACCCACGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20003392 original size:26 final size:26
Alignment explanation
Indices: 20003363--20003415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20003353 CTGGTCCGAT
* *
20003363 CTTAGACTGTGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
20003389 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
20003415 C
1 C
20003416 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:20004295 original size:26 final size:26
Alignment explanation
Indices: 20004266--20004315 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20004256 CCGATCTGAT
* *
20004266 CTTACATTGGGGATGAACTCCGTAAG
1 CTTACACTGGGAATGAACTCCGTAAG
*
20004292 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
20004316 TGCCTAAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTAAG
Found at i:20005192 original size:26 final size:26
Alignment explanation
Indices: 20005163--20005215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005153 CCGGTCCGAT
*
20005163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20005189 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20005215 C
1 C
20005216 CTCAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20006093 original size:26 final size:26
Alignment explanation
Indices: 20006064--20006115 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20006054 CCGATCCGAT
20006064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20006090 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20006116 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20007009 original size:26 final size:26
Alignment explanation
Indices: 20006969--20007021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20006959 CTGGTCCAAT
* *
20006969 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
20006995 CTTAGTCTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
20007021 C
1 C
20007022 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:20007905 original size:26 final size:26
Alignment explanation
Indices: 20007867--20007919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20007857 CCGGTCCGAT
* * *
20007867 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
20007893 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
20007919 C
1 C
20007920 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:20008809 original size:26 final size:26
Alignment explanation
Indices: 20008773--20008825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20008763 CTAGTCCAAT
* *
20008773 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20008799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20008825 C
1 C
20008826 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20010601 original size:26 final size:26
Alignment explanation
Indices: 20010567--20010619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20010557 CCGGTCCGAT
20010567 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20010593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20010619 C
1 C
20010620 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20011986 original size:26 final size:26
Alignment explanation
Indices: 20011947--20011999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20011937 TCGGTCCGAT
* *
20011947 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20011973 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20011999 C
1 C
20012000 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:20012881 original size:26 final size:26
Alignment explanation
Indices: 20012843--20012895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20012833 CCAGTCCAAT
* *
20012843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20012869 CTTATACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20012895 C
1 C
20012896 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20013796 original size:26 final size:26
Alignment explanation
Indices: 20013746--20013798 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20013736 CCGGTCCGAT
*
20013746 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
20013772 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20013798 C
1 C
20013799 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20013963 original size:903 final size:901
Alignment explanation
Indices: 20011799--20020727 Score: 10791
Period size: 897 Copynumber: 10.0 Consensus size: 901
20011789 CTCACACCCA
* * * * *
20011799 CCCCGGACCCCCCGATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGACGATGCTCCTATG
1 CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* ** * * * *
20011864 ATGGTGCCCCGACGAAGAAAAATATGGTACCAGCACATGCCCGAGTCCAGCATGTGCTGTCATAA
66 ATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
* * * *
20011929 CCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGCGAATGAACTCC
131 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * *
20011994 GTATGCCTAAGTCAGCACACGGAACGAGCGTGCGGGTGCTCAGCCGACC-GAGGGGCAGGATGCA
196 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** *** * ** *
20012058 CAAGCCGGGGGTCGATCGGGTCCCCCTCTGCGTGCTATAGATCCTGCTGCCACAACCCTCAGTCT
261 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCC
* * *
20012123 GGTCTGATGTTAGACTGGGAATGAA-TGCCGTATGCCTAACCCAACCGACGAAACGA----G-TG
326 GGTCTGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * ** * * *
20012182 -GGCGGGCAGGCACTATGCCTACCAGAGAGATGGTATGCGCAAGCCGTTGATCGATAGGGT-GTA
390 CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
20012245 GGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAGTTCAT
455 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
20012310 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
520 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * ***
20012375 A-TTTTGAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTGT-GGAAGGAGTTTTGGCTGTA
585 ATTTTTG-AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT-TCGGAAGGAGTTTTGGCCCCA
* * *
20012438 AACTTGGTAGAAGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGA
648 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
20012503 AGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTCATGGCTTCTA
713 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
20012568 GCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTCATGAGGG
778 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * * *
20012633 ACAAGGGGCCAATATTAGGGCGAAGTGCCAGCACCCATCGCACATCTTGTGCGAACACCCTC
843 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACAC-C
* * * * * *
20012695 CCCCGGCCCCCTCGATCATCAG-AACCCTAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCAAC
1 CCCCGGCCCCCCCGATCGTCGGAAACCC-AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * * *
20012759 GATGGTGCCCCGGCAAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
65 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
* * * *
20012824 ACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTATACTAGGAATGAACTC
130 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
20012889 CATATGCCTAAGTCAACCCACGAAACGAGCGTCCGAGCGCTCAGCTGGCTAGAGGGGCAGGATGC
195 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
20012954 GCATGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTC
260 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTC
* * * * *
20013019 TGGTCTAAGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAG
325 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* * *
20013084 GCGGCCGAGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCTAGCCGTGGATCGATAGGGTGG
389 GCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
20013149 TTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
453 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
20013214 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTT-A
518 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** *
20013278 CGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTTAAATTTTTTTTGAAGGAGTTTTGGCCCAA
583 CGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
20013343 AACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCG
648 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCG
*
20013408 AAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
712 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
20013473 GG-AGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAG
777 GGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
20013537 CGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
841 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
20013598 CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATG
1 CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
*
20013663 ATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
66 ATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
* ** *
20013728 CCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTTGGAATGAACTCC
131 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
20013793 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCG
196 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * ** *
20013858 CAAGCCAGAGATCAGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTATCGCAACCCTTGGTCA
261 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCC
*
20013923 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G-
326 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
20013986 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
391 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
20014051 GTTGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
456 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
20014116 CAACGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
521 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
20014181 TTTTGGAAACTTTTTACGGTTC-GAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAA
586 TTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
20014245 CTTGGTAGACGTGATCCTTCTATTTTTGTTGGCACGCACAAAAACATTCAGCTAAAAACTCAAAG
650 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
20014310 TGTACAAGATTTTGTGACCTTTTGAATAAAGTGTCCCCATTTGAGACACTTTAATGGCTGCTGGC
715 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* ** *
20014375 AGCATACCTACAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
780 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
20014440 AGGGGTCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACC
845 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
20014497 CCCTCGGCCCCCCTGACCGTCGG-AACCATAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGA
1 CCC-CGGCCCCCCCGATCGTCGGAAACC-CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** * *
20014561 CGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTACCAC
64 CGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * * * * * * *
20014626 AAACCTCGGTCTGGTCCGATCTTAGATTGGGAATGAATTCTGTATGCTTAGATTTGGAATCAACT
129 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * **
20014691 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCAGAGGGGCAAGATG
194 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * * *
20014756 CGTAAGCCGCGGG-TCGGTCGGACACCCCCT-TGCGTGCTGCTGATCCTGCTGTCACAACCCTTG
259 CGCAAGCCG-GGGATCGGCCGG-GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTG
* *
20014819 TTCCGGT-TCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
322 GTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*
20014879 GC-G-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
386 GCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * ** *
20014942 GGTAGTTGGGTTTAGGCACATCTTCACATTTTTGTGTGCCAATGCCATTTTAATGGCTTGTAAAT
451 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * ** * * *
20015007 TCACATAATGGTCCTTTAAGCTTTCACGTGAACATTCATGGTAAGATGGCTCGTTTTCTATTTTT
516 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * *
20015072 CACGATTTTCAAAACTTTTTGCGGTT-TGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCC
581 CACGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
20015136 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAATT
645 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
20015201 CGAAGTGTACAACATTTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
710 CGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
20015266 GCTGGCAGGATACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
774 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
20015331 AGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCC
839 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* *
20015395 CCCCGGACCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGA-GATGCTCCGA
1 CCCCGGCCCCCCCGATCGTC-GGAAACCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCCGA
** * * * ***
20015458 CGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATTCCAGAGCCCAGCATGTGCTGTTGC
64 CGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * * *
20015523 AACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACT
129 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
20015588 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGACGGGATG
194 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * * * * ***
20015653 CACAAGCCGGGGATCGGTTGAGTCCCCTTCTACTTGCTGCCGATCCTGCTGTCGCAACCCTCAAT
259 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGT
* * *
20015718 CCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCG
324 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* * *
20015783 GGCGGGCGGGCGGGCACTACGCCGACCAGTGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
388 GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * *
20015848 GTAGGTTGGTTTAGGCACATCTTTATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
452 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* **
20015913 CATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATTACTCGTTTTCTATTTTTC
517 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
20015978 ACGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAGTTTTTTCGGAAGGAGTTTGGGCCCC
582 ACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*** * * *
20016043 AAACTTGGTAGACGTGATCCTTGTACAAGATT-TTGG---G-AC------CTT---TTGAAAA--
647 AAACTTGGTAGACGTGATCCTTGT--ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*** ** * ** *
20016092 --AAGTGT-CCCCA-TTTCAGA-CACTTT-----AA-TGGCTAC-TTGCAG-CA----AA---C-
710 CGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * * ** * *** * * *** * **
20016136 -CT-GTA--AAATCT-CAAATGCTCTTTAAGGGGGTGTGA-GTTCT-TGAGGTT-TGATGAGGGA
774 ACTGGCAGCAAACCTGTAAA--ATCTCAAATGCTCTTTAAGGGGGTGTGA-GTTCT--CGAGGTT
* ** ** * * ** * *
20016193 T-AAG-GGGCCAATATAAGGGCCAAGTACT-AGCACCCATCGTA-CATCA--TGTGCGCACACCC
834 TGATGAGGG---ATA-GGGGGCCAA-TA-TAAG-GGCCA-AGTACCAGCACCCAT-CGCACATCA
**
20016252 CCTG-GC-C-CC
890 TGTGCGCACACC
** * * * * * * * *
20016261 CTCGATCGTCGG-AACCCCAATACCGCCGG----TC-AGGTTCTCCGGT--GATGCTCCGACGAT
1 C-C---C--CGGCCCCCCCGAT--CGTCGGAAACCCAATG-CCGCCGGTCAGGTTCTCCGACGAT
* * **
20016318 GGT--G-C-------CTC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCTTAGCATGTG
57 GCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20016372 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGA
122 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * ** *
20016437 ATGAACTCCGTATGCCTAAGTAAACCCACTAAA-AAGCGTGCGGATGCTCAGTCGGCCAGAGGGG
187 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* ** * * * * *
20016501 TGGGATGATCAAGCCGGGGATCGGCCGGGTCCTCCTTTGCGTGCTACCGATCCTGCTACCGTAAC
252 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * ** *
20016566 CCTTGATTCGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAAATGATGAAACGA
317 CCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
20016630 ----GC-G-GGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATTCGCAAGCCATGGATCGATA
382 GCGGGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
20016689 GGGTGGTAGGCGGGTTT-GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCGTGT
447 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
** * *
20016753 AAATTCATACAATGGTCTGTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTTGTTTTCTAT
512 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * **
20016818 TTTTCATGATTTTTGAAACTTTTTGTGGTTC-GAGATTTTCTAAAATTTTTTCAAAAGGAGTTTT
577 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
20016882 GGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAA
641 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
20016947 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCAATTTGCA-AGCACTTTA
706 AACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT-CAGA-CACTTTA
* * *
20017011 ATGGTTACTGGTCAGCAAAACCTATAAAATCTCAAAATGCCTCTTCAAGGGGGTGTGAGTTCTCG
768 ATGGCTACTGG-CAGC-AAACCTGTAAAATCTC-AAATG-CTCTTTAAGGGGGTGTGAGTTCTCG
* * *
20017076 AGGTTTGATGAGGAATAGGGGGCCAATATGAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
829 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
20017141 TGCAAACC
894 CGCACACC
* * * * * *
20017149 CCCCTGACCCCCCCGATCATCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCACCGAC
1 CCCC-GGCCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * *
20017214 GATAGTGCCCTGGCGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
65 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
20017279 ACCCT---T---G---G----T---CT----A-G---TCCG-AT-CTTAGACTGGGAATGAACTC
130 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
20017318 CGTATGCCTACGTCAAACCACGAAACGAGCGTGCGGGCGCTCTA-CCGGCTAGAGGGGCGGGATG
195 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATG
** * ** * * * *
20017382 CGCAAGCCGGGGATCAACCGAGTCCCCCTCTATGTGCTGTCGATCCTACTACCGCAACCCTCGGT
259 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGT
* * * * *
20017447 CCTGTCTGGTGTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACAAAACGAGCGGGCG
324 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* * * *
20017512 GGCGGGTGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTG
388 GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
20017577 GTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCTATGCCATTTTTATGGCTTGTAAATT
452 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
20017642 CATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTC
517 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* *
20017706 ACGATTTTTGAAACTTTTTGAGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC
582 ACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* **
20017771 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGGTCAGCTAAAAACTCG
647 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
20017836 TAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
712 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
20017901 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-TGAGG
777 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
20017965 GATAGGGAGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
842 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * * * *
20018026 CCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGGCGATGCTCCAACG
1 CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* *
20018091 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
66 ATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
* * * * * * * * *
20018156 CCATCGGTACAGTCCGATCTTGGACTGGGTATGAACTACGTATGCTTAAACTGGGAATCAACTCT
131 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
*** * *
20018221 GTATGCCTAAGTCAACCCACGAAACGAGCGTGAAAGCGCTCAGCCGACCAAAGGGGCGGGATGCG
196 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * ** * * * *
20018286 CAAGTCGGGAATCGGCCAGGTCCCCCTCTGCGTGCCACTGATCCTACTGCCACAACCCTTGGTCT
261 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCC
* * * * *
20018351 GATCTAATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCTAACCGACAAAACGAGCGGGCGGA
326 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-
** * * *
20018416 CGGGCGGGCGGGCACTACATCGGCCAGAGAAACGGGATGCACAAGCCGTAGATCGATAGGGTGGT
390 C-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * **
20018481 AGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATCGCTTGTAACCTCA
454 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
20018546 TACAATGGTGCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTAC
519 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
20018611 GATTTTTGAAA-TGTTTTGCGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGCCCCA
584 GATTTTTGAAACT-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
20018675 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAACCT-AAAACTCA
648 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCG
*
20018739 AAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
712 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
20018804 GGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
777 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
20018869 GATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
842 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * ** *
20018929 CCTCGGCCCCCCCGATTGTCGGAACCCCAAT-CCTGTCGATCAGGTTCTCCGGTGATGCTCCGTC
1 CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCC-GCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * *
20018993 GATGCTG-CCTCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
65 GATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * * *
20019057 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACTGGGAATGAACT
129 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
*
20019122 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
194 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * *
20019187 CGCAA-CCGGGGACCGACTGGGTCCCACTCTACGTGCTGCCGATCTTGCTGCCTCAACCCTGGGT
259 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGT
** * * *
20019251 CATGTGTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGACAAAACGAGCGGGC-
324 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
20019315 G-GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
389 GCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
20019379 AGGTGGGTTTAGGCACATCTTCATA-TTATGCATGCCAATGCCATTTTTATGGCTTATAAATTCA
454 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
20019443 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
519 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
*
20019508 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
584 GATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * ** *
20019573 A-TGTGGTTGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGGTCAGCTTAAAACTCGA
649 ACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
20019637 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
713 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
20019702 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
778 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
20019767 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
843 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* *
20019827 CCCCGG-CCCCCCGATCGTCGG-AACTCCAATGTCGTCGGTCAGGTTCTCCGACGA---T--G--
1 CCCCGGCCCCCCCGATCGTCGGAAAC-CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * * *
20019883 G-TGCT--CC-GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGCA
65 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
20019944 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
130 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
20020009 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGC
195 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * ** * * * * * *
20020074 ACAAGCCAGGGATCAACCGGGTCCCCCTTTACGTGCTGTCGATCTTGCTACCGCAACCCTCGGT-
260 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTC
* * * *
20020138 CTG-ATGCATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGC
325 CGGTCTG-A-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * *
20020202 GGGCGGGCGGGTGGTCACTACACCGGCCAGAGAGACTGGATGCGCAAGCCGTGAATCGATATGGT
388 -GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * **
20020267 AGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
451 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20020332 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGTA-TCGTTTTCAATTTT
516 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTT
* * * *
20020396 TCACGATTTTTGAAACTTTTTACTGTTCAGGACTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
580 TCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
20020461 CCAAACTTTGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTTAGCTAAAAAAT
645 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
20020525 TGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
710 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
20020590 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAAGGGGTGTGAGTTCTCGAGGTTTAATGA
775 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
20020655 GGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCGATTGCATATGATGTGCGCACACC
840 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
20020716 CCCCGGCCCCCC
1 CCCCGGCCCCCC
20020728 TATCACCGGA
Statistics
Matches: 6939, Mismatches: 875, Indels: 444
0.84 0.11 0.05
Matches are distributed among these distances:
843 3 0.00
844 5 0.00
845 185 0.03
846 67 0.01
847 1 0.00
848 3 0.00
850 2 0.00
854 39 0.01
855 95 0.01
856 125 0.02
857 7 0.00
861 6 0.00
862 2 0.00
863 8 0.00
864 3 0.00
865 12 0.00
866 16 0.00
867 26 0.00
868 8 0.00
869 21 0.00
870 15 0.00
871 17 0.00
872 8 0.00
873 47 0.01
874 98 0.01
875 38 0.01
876 171 0.02
877 39 0.01
878 8 0.00
879 24 0.00
880 8 0.00
881 21 0.00
882 26 0.00
883 221 0.03
884 119 0.02
885 18 0.00
886 205 0.03
887 116 0.02
888 30 0.00
889 27 0.00
890 58 0.01
891 242 0.03
892 181 0.03
893 7 0.00
894 1 0.00
895 4 0.00
896 523 0.08
897 1010 0.15
898 104 0.01
899 433 0.06
900 419 0.06
901 18 0.00
902 453 0.07
903 807 0.12
904 75 0.01
905 392 0.06
906 319 0.05
907 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CCCCGGCCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCC
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
Found at i:20014675 original size:26 final size:26
Alignment explanation
Indices: 20014646--20014698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20014636 CTGGTCCGAT
* *
20014646 CTTAGATTGGGAATGAATTCTGTATG
1 CTTAGATTGGGAATCAACTCTGTATG
*
20014672 CTTAGATTTGGAATCAACTCTGTATG
1 CTTAGATTGGGAATCAACTCTGTATG
20014698 C
1 C
20014699 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
CTTAGATTGGGAATCAACTCTGTATG
Found at i:20015595 original size:26 final size:26
Alignment explanation
Indices: 20015543--20015595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20015533 CTGGTCCGAT
* *
20015543 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
20015569 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
20015595 C
1 C
20015596 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:20016435 original size:26 final size:26
Alignment explanation
Indices: 20016399--20016451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20016389 CCGATCCGAT
* *
20016399 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20016425 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20016451 C
1 C
20016452 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20019992 original size:26 final size:26
Alignment explanation
Indices: 20019963--20020015 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20019953 CCGGTCCGAT
20019963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20019989 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20020015 C
1 C
20020016 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20020921 original size:4 final size:4
Alignment explanation
Indices: 20020872--20021003 Score: 56
Period size: 4 Copynumber: 31.5 Consensus size: 4
20020862 TCTTTTGTAT
* * *
20020872 TTTA TGTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA -TTTA TTTA
* * *
20020920 TTTA TTTA TTTA TTTT TTTG TTAATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA T-T-TA -TTTA TTTA TTTA
* * * *
20020969 GTTC TATA TTTA TTATA TATTA -TAA TTTA TTTA TT
1 TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TT
20021004 ATTATTACTT
Statistics
Matches: 96, Mismatches: 19, Indels: 26
0.68 0.13 0.18
Matches are distributed among these distances:
3 10 0.10
4 63 0.66
5 15 0.16
6 7 0.07
7 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:20020927 original size:21 final size:20
Alignment explanation
Indices: 20020869--20020935 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 20
20020859 TTTTCTTTTG
20020869 TATTTTATGTATTTA-TTAT
1 TATTTTATGTATTTATTTAT
*
20020888 TATTATATGTATATT-TTTACT
1 TATTTTATGTAT-TTATTTA-T
*
20020909 TATTTTATTTATTTATTTATT
1 TATTTTATGTATTTATTTA-T
20020930 TATTTT
1 TATTTT
20020936 TTTGTTAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 11 0.28
20 7 0.17
21 22 0.55
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.70
Consensus pattern (20 bp):
TATTTTATGTATTTATTTAT
Found at i:20020967 original size:21 final size:20
Alignment explanation
Indices: 20020878--20020967 Score: 65
Period size: 21 Copynumber: 4.2 Consensus size: 20
20020868 GTATTTTATG
* *
20020878 TATTTATTATTATTATATGTA
1 TATTTA-TATTATTTTATTTA
*
20020899 TATTTTTACTTATTTTATTTA
1 TATTTATA-TTATTTTATTTA
*
20020920 TTTATTTAT-TTATTTTTTTGTTAA
1 --TATTTATATTA-TTTTAT-TT-A
20020944 TATTTATATGTATTTTATTTA
1 TATTTATAT-TATTTTATTTA
20020965 TAT
1 TAT
20020968 AGTTCTATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
20 2 0.04
21 22 0.40
22 14 0.25
23 14 0.25
24 3 0.05
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (20 bp):
TATTTATATTATTTTATTTA
Found at i:20020978 original size:21 final size:17
Alignment explanation
Indices: 20020878--20021008 Score: 63
Period size: 16 Copynumber: 8.1 Consensus size: 17
20020868 GTATTTTATG
20020878 TATTTA-TTAT-TATTA
1 TATTTATTTATATATTA
20020893 TATGTATATTT-T-TACTTA
1 TAT-T-TATTTATATA-TTA
*
20020911 T-TTTATTTATTTATT-
1 TATTTATTTATATATTA
* * *
20020926 TATTTATTTTTTTGTTA
1 TATTTATTTATATATTA
*
20020943 -A--TATTTATAT-GTA
1 TATTTATTTATATATTA
20020956 T-TTTATTTATATAGTTCTA
1 TATTTATTTATATA--T-TA
20020975 TATTTA-TTATATATTA
1 TATTTATTTATATATTA
20020991 TAATTTATTTAT-TATTA
1 T-ATTTATTTATATATTA
20021008 T
1 T
20021009 TACTTTTTTA
Statistics
Matches: 92, Mismatches: 6, Indels: 34
0.70 0.05 0.26
Matches are distributed among these distances:
13 2 0.02
14 7 0.08
15 18 0.20
16 21 0.23
17 20 0.22
18 10 0.11
19 10 0.11
20 4 0.04
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (17 bp):
TATTTATTTATATATTA
Found at i:20021006 original size:17 final size:18
Alignment explanation
Indices: 20020957--20021008 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
20020947 TTATATGTAT
*
20020957 TTTATTTATATAGTTCTATA
1 TTTATTTATATA-TTATA-A
20020977 TTTA-TTATATATTATAA
1 TTTATTTATATATTATAA
20020994 TTTATTTAT-TATTAT
1 TTTATTTATATATTAT
20021009 TACTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 11 0.37
18 8 0.27
19 7 0.23
20 4 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTATTTATATATTATAA
Found at i:20021650 original size:20 final size:20
Alignment explanation
Indices: 20021625--20021662 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20021615 TTCGACGAAC
20021625 TTCCGACGAAAAAACCCAAA
1 TTCCGACGAAAAAACCCAAA
* *
20021645 TTCCGATGACAAAACCCA
1 TTCCGACGAAAAAACCCA
20021663 GAATCCGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.32, G:0.11, T:0.13
Consensus pattern (20 bp):
TTCCGACGAAAAAACCCAAA
Found at i:20022087 original size:17 final size:16
Alignment explanation
Indices: 20022053--20022092 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20022043 TTAGATTAGG
*
20022053 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
20022069 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
20022086 TTTATTT
1 TTTATTT
20022093 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:20022099 original size:17 final size:17
Alignment explanation
Indices: 20022079--20022126 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
20022069 TTTATCTTAA
20022079 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
20022095 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
20022113 TTTCTATTTTTATT
1 TTT-TATTTTTATT
20022127 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:20022126 original size:14 final size:14
Alignment explanation
Indices: 20022079--20022136 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20022069 TTTATCTTAA
20022079 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
20022091 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
20022105 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
20022120 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
20022134 TTT
1 TTT
20022137 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:20022141 original size:17 final size:17
Alignment explanation
Indices: 20022102--20022141 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
20022092 TTTGTTTTAC
*
20022102 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
20022119 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
20022133 TTTTCTTTA
1 TTTTCTTTA
20022142 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:20022293 original size:118 final size:117
Alignment explanation
Indices: 20022144--20022439 Score: 443
Period size: 118 Copynumber: 2.5 Consensus size: 117
20022134 TTTCTTTAAA
20022144 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* *
20022209 AATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
64 AATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
20022263 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
20022328 ATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
*
20022381 TAAAAAT-AAATTTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTC-AAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
20022440 CTACACAAGA
Statistics
Matches: 161, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
117 8 0.05
118 128 0.80
119 25 0.16
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20022318 original size:60 final size:59
Alignment explanation
Indices: 20022144--20022439 Score: 420
Period size: 58 Copynumber: 5.0 Consensus size: 59
20022134 TTTCTTTAAA
*
20022144 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
***
20022205 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
20022263 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCT
1 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20022323 TAAAAATAAA-TTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20022381 TAAAAATAAATTTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTC-AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
20022440 CTACACAAGA
Statistics
Matches: 212, Mismatches: 16, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
58 92 0.43
59 34 0.16
60 79 0.37
61 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20026383 original size:30 final size:30
Alignment explanation
Indices: 20026311--20026385 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
20026301 ACAATGGATG
* * * *
20026311 AAAAATGAGAAAAGAGAAAAAAGATGATGA
1 AAAAATGAAAAAAAAAAAAAAAGATAATGA
* *
20026341 AAAAAGGAAAAAAAAAAAGAAAGA-AATGA
1 AAAAATGAAAAAAAAAAAAAAAGATAATGA
20026370 AAAAATGAAAAAAAAA
1 AAAAATGAAAAAAAAA
20026386 GATTCAAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 19 0.50
30 19 0.50
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (30 bp):
AAAAATGAAAAAAAAAAAAAAAGATAATGA
Found at i:20027716 original size:41 final size:41
Alignment explanation
Indices: 20027630--20028287 Score: 881
Period size: 41 Copynumber: 16.1 Consensus size: 41
20027620 ATGATTGTCA
*
20027630 AGGAGCAATTTACTTTCCAATAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAA-AGTCGTGGTGCCTCTGTTTAG
* *
20027672 AGGAGCAATTTATTTTCCAAAGTCATGGTGCCTCTGTTTGG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20027713 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
*
20027755 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
20027797 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20027838 AGTAGCAATTTACTTTCCAAAAGTCGT-G-G----TG----G
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* * ** * *
20027870 AGCA--ATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
20027909 AGGAGCAATCTATTTTTCAAAGTCGTGGTGCCTGTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
20027950 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* *
20027992 AGGAGCAATTTATTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
20028033 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* *
20028075 ATGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
20028116 AGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20028157 ATGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20028198 AGGAGCAATTTATTTTCAAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20028239 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
20028282 AGGAGC
1 AGGAGC
20028288 TTTGGTAAAA
Statistics
Matches: 543, Mismatches: 54, Indels: 37
0.86 0.09 0.06
Matches are distributed among these distances:
29 8 0.01
30 7 0.01
31 1 0.00
32 4 0.01
35 2 0.00
36 2 0.00
39 4 0.01
40 1 0.00
41 304 0.56
42 184 0.34
43 26 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:20027772 original size:83 final size:84
Alignment explanation
Indices: 20027630--20027868 Score: 394
Period size: 83 Copynumber: 2.9 Consensus size: 84
20027620 ATGATTGTCA
*
20027630 AGGAGCAATTTACTTTC-CAATAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC-AAA
1 AGGAGCAATTTACTTTCTCAA-AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAA
* *
20027693 GTCATGGTGCCTCTGTTTGG
65 GTCGTGGTGCCTCTGTTTAG
*
20027713 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAG
20027778 TCGTGGTGCCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAG
* *
20027797 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGTAGCAATTTACTTTCCAAAAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAG
20027861 TCGTGGTG
66 TCGTGGTG
20027869 GAGCAATTTA
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
83 111 0.76
84 36 0.24
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (84 bp):
AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAG
TCGTGGTGCCTCTGTTTAG
Found at i:20027883 original size:29 final size:29
Alignment explanation
Indices: 20027841--20027897 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
20027831 TGTTTAGAGT
20027841 AGCAATTTACTTTCCAAAAGTCGTGGTGG
1 AGCAATTTACTTTCCAAAAGTCGTGGTGG
20027870 AGCAATTTACTTTCCAAAAGTCGTGGTG
1 AGCAATTTACTTTCCAAAAGTCGTGGTG
20027898 CCTCTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (29 bp):
AGCAATTTACTTTCCAAAAGTCGTGGTGG
Found at i:20027916 original size:71 final size:69
Alignment explanation
Indices: 20027798--20027938 Score: 210
Period size: 71 Copynumber: 2.0 Consensus size: 69
20027788 TCTGTTTAGA
* * * *
20027798 GGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGTAGCAATTTACTTTCCAAAAGTC
1 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTACTTTCC-AAAGTC
20027863 GTGGT
65 GTGGT
* *
20027868 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTC
1 GGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTACTTTCCAAAGTC
20027933 GTGGT
65 GTGGT
20027938 G
1 G
20027939 CCTGTGTTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 27 0.42
71 37 0.58
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (69 bp):
GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTACTTTCCAAAGTCG
TGGT
Found at i:20028181 original size:82 final size:83
Alignment explanation
Indices: 20027868--20028287 Score: 718
Period size: 83 Copynumber: 5.1 Consensus size: 83
20027858 AAGTCGTGGT
*
20027868 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTC
1 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
*
20027933 GTGGTGCCTGTGTTTAGA
66 GTGGTGCCTCTGTTTAGA
20027951 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
1 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
*
20028016 ATGGTGCCTCTGTTTAGA
66 GTGGTGCCTCTGTTTAGA
*
20028034 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTTATTTTTCAAAGTC
1 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
20028099 GTGGTGCCTCTGTTTAGA
66 GTGGTGCCTCTGTTTAGA
* *
20028117 GGAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTTATTTTTCAAAGTC
1 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
20028181 GTGGTGCCTCTGTTTAGA
66 GTGGTGCCTCTGTTTAGA
* *
20028199 GGAGCAATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAG
1 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAG
* *
20028263 TCGTTGAGCCTCTGTTTAGA
64 TCGTGGTGCCTCTGTTTAGA
20028283 GGAGC
1 GGAGC
20028288 TTTGGTAAAA
Statistics
Matches: 325, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
82 121 0.37
83 175 0.54
84 29 0.09
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (83 bp):
GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
GTGGTGCCTCTGTTTAGA
Found at i:20028300 original size:1 final size:1
Alignment explanation
Indices: 20028294--20028343 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
20028284 GAGCTTTGGT
* * * * *
20028294 AAAAAAAAAAAAAACAAAAAACAAAAAAAAAACACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
20028344 TGACAATGTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:20028314 original size:11 final size:11
Alignment explanation
Indices: 20028294--20028343 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
20028284 GAGCTTTGGT
20028294 AAAAAAAAAA-
1 AAAAAAAAAAC
20028304 AAAACAAAAAAC
1 AAAA-AAAAAAC
20028316 AAAAAAAAAAC
1 AAAAAAAAAAC
*
20028327 ACAAAAAAAAC
1 AAAAAAAAAAC
20028338 AAAAAA
1 AAAAAA
20028344 TGACAATGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
10 4 0.11
11 28 0.78
12 4 0.11
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:20028321 original size:20 final size:19
Alignment explanation
Indices: 20028294--20028343 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 19
20028284 GAGCTTTGGT
20028294 AAAAAAAAAAAAAACAAAA
1 AAAAAAAAAAAAAACAAAA
*
20028313 AACAAAAAAAAAACACAAAA
1 AA-AAAAAAAAAAAACAAAA
20028333 AAAACAAAAAA
1 AAAA-AAAAAA
20028344 TGACAATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAACAAAA
Found at i:20028349 original size:10 final size:9
Alignment explanation
Indices: 20028294--20028343 Score: 66
Period size: 10 Copynumber: 5.4 Consensus size: 9
20028284 GAGCTTTGGT
20028294 AAAAAA-AA
1 AAAAAACAA
20028302 AAAAAACAA
1 AAAAAACAA
*
20028311 AAAACAAAAA
1 AAAA-AACAA
20028321 AAAAACACAA
1 AAAAA-ACAA
20028331 AAAAAACAA
1 AAAAAACAA
20028340 AAAA
1 AAAA
20028344 TGACAATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
8 6 0.16
9 15 0.41
10 16 0.43
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:20028548 original size:12 final size:12
Alignment explanation
Indices: 20028533--20028662 Score: 64
Period size: 12 Copynumber: 11.1 Consensus size: 12
20028523 TTTTCTTTTG
20028533 TATTTTATTATT
1 TATTTTATTATT
20028545 TATTATTATTATAT
1 TATT-TTATTAT-T
20028559 GTATATTT-TTATT
1 -TAT-TTTATTATT
20028572 TA-TTTATTTATT
1 TATTTTA-TTATT
20028584 TA-TTTATT-TT
1 TATTTTATTATT
* * *
20028594 T-TTCTGTTA-A
1 TATTTTATTATT
*
20028604 TA-TTTA-TATG
1 TATTTTATTATT
*
20028614 TATTTTATTTATA
1 TATTTTA-TTATT
*
20028627 TAGTTCTA-TATT
1 TA-TTTTATTATT
20028639 TA-TTTATTATT
1 TATTTTATTATT
*
20028650 TTTTTTATTATT
1 TATTTTATTATT
20028662 T
1 T
20028663 TTCTTGTAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 32
0.68 0.08 0.24
Matches are distributed among these distances:
9 2 0.02
10 18 0.20
11 11 0.12
12 32 0.35
13 13 0.14
14 9 0.10
15 5 0.05
16 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (12 bp):
TATTTTATTATT
Found at i:20028575 original size:4 final size:4
Alignment explanation
Indices: 20028536--20028650 Score: 62
Period size: 4 Copynumber: 28.8 Consensus size: 4
20028526 TCTTTTGTAT
*
20028536 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * *
20028582 TTTA TTTA TTTT TTTC TGTTA -ATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA TTTA
* * *
20028629 GTTC TATA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTT
20028651 TTTTTATTAT
Statistics
Matches: 85, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
3 16 0.19
4 56 0.66
5 9 0.11
6 3 0.04
7 1 0.01
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:20028621 original size:43 final size:40
Alignment explanation
Indices: 20028531--20028625 Score: 104
Period size: 42 Copynumber: 2.4 Consensus size: 40
20028521 TTTTTTCTTT
*
20028531 TGTATTTTA-TTATTTATTATTATTATATGTATATTTTTA
1 TGTATTTTATTTATTTATTATTATTATATGTATATTTATA
* * * *
20028570 TTTA-TTTATTTATTTATTTATTTTTTTCTGTTAATATTTATA
1 TGTATTTTATTTATTTA-TTATTATTATATG-T-ATATTTATA
20028612 TGTATTTTATTTAT
1 TGTATTTTATTTAT
20028626 ATAGTTCTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
38 4 0.09
39 10 0.22
40 10 0.22
41 1 0.02
42 11 0.24
43 9 0.20
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.69
Consensus pattern (40 bp):
TGTATTTTATTTATTTATTATTATTATATGTATATTTATA
Found at i:20028663 original size:12 final size:12
Alignment explanation
Indices: 20028641--20028680 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
20028631 TCTATATTTA
20028641 TTTATTATTTTT
1 TTTATTATTTTT
20028653 TTTATTATTTTT
1 TTTATTATTTTT
*
20028665 CTTGTAATATTTTT
1 -TT-TATTATTTTT
20028679 TT
1 TT
20028681 GATTTATCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 12 0.48
13 4 0.16
14 9 0.36
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (12 bp):
TTTATTATTTTT
Found at i:20029277 original size:20 final size:20
Alignment explanation
Indices: 20029252--20029298 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
20029242 GGTGAACTTT
*
20029252 CGGTGAAAAAACCAAGATTC
1 CGGTGAAAAAACCAAGAATC
* *
20029272 CGGTGATAAAACCCAGAATC
1 CGGTGAAAAAACCAAGAATC
*
20029292 AGGTGAA
1 CGGTGAA
20029299 TCTTCAACCG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (20 bp):
CGGTGAAAAAACCAAGAATC
Found at i:20029630 original size:11 final size:11
Alignment explanation
Indices: 20029614--20029759 Score: 60
Period size: 12 Copynumber: 12.0 Consensus size: 11
20029604 CTGCTCCAGG
*
20029614 TTTTTTTTGTT
1 TTTTTTTTATT
20029625 TTTTTTTTATTT
1 TTTTTTTTA-TT
20029637 TTTTATTTTCATT
1 TTTT-TTTT-ATT
*
20029650 TATTTGTTTATTT
1 T-TTTTTTTA-TT
20029663 GTTTTTTTTATT
1 -TTTTTTTTATT
***
20029675 TATTAGATTAGGTT
1 T-TTTTTTTA--TT
* **
20029689 TATTTAATATT
1 TTTTTTTTATT
20029700 CTTTTTATCTTAATT
1 -TTTTT-T-TT-ATT
*
20029715 TTATTTTTATT
1 TTTTTTTTATT
*
20029726 TTTGTTTTACTT
1 TTTTTTTTA-TT
20029738 TTTTTTTT-TT
1 TTTTTTTTATT
20029748 TTTATTTTTATT
1 TTT-TTTTTATT
20029760 ATTCTATTTT
Statistics
Matches: 102, Mismatches: 17, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
10 5 0.05
11 26 0.25
12 31 0.30
13 24 0.24
14 13 0.13
15 3 0.03
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:20029639 original size:18 final size:17
Alignment explanation
Indices: 20029614--20029678 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
20029604 CTGCTCCAGG
*
20029614 TTTTTTTTGTT-TTTTT
1 TTTTTTTTTTTATTTTT
* *
20029630 TTTATTTTTTTATTTTCA
1 TTTTTTTTTTTATTTT-T
* * *
20029648 TTTATTTGTTTATTTGT
1 TTTTTTTTTTTATTTTT
*
20029665 TTTTTTTATTTATT
1 TTTTTTTTTTTATT
20029679 AGATTAGGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
16 9 0.23
17 16 0.41
18 14 0.36
ACGTcount: A:0.11, C:0.02, G:0.05, T:0.83
Consensus pattern (17 bp):
TTTTTTTTTTTATTTTT
Found at i:20029645 original size:17 final size:17
Alignment explanation
Indices: 20029625--20029762 Score: 59
Period size: 17 Copynumber: 7.6 Consensus size: 17
20029615 TTTTTTTGTT
20029625 TTTTTTTTATTTTTTTA
1 TTTTTTTTATTTTTTTA
* *
20029642 TTTTCATTTATTTGTTTA
1 TTTT-TTTTATTTTTTTA
*
20029660 TTTGTTTTT-TTTATTTA
1 TTT-TTTTTATTTTTTTA
* **
20029677 TTAGATTAGGTTTA-TTTAATA
1 TT---TT--TTTTATTTTTTTA
*
20029698 TTCTTTTTATCTTAATTTTA
1 TTTTTTTTAT-TT--TTTTA
*
20029718 TTTTTATTT-TTGTTTTA
1 TTTTT-TTTATTTTTTTA
20029735 CTTTTTTTT-TTTTTTTA
1 -TTTTTTTTATTTTTTTA
*
20029752 TTTTTATTATT
1 TTTTTTTTATT
20029763 CTATTTTCTT
Statistics
Matches: 90, Mismatches: 16, Indels: 30
0.66 0.12 0.22
Matches are distributed among these distances:
16 11 0.12
17 30 0.33
18 25 0.28
19 3 0.03
20 9 0.10
21 12 0.13
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTTTTTATTTTTTTA
Found at i:20029724 original size:6 final size:6
Alignment explanation
Indices: 20029713--20029769 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
20029703 TTTATCTTAA
*
20029713 TTTTAT TTTTAT TTTT-G TTTTACT TTTT-T TTTT-T TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
20029759 TATTCTAT TTT
1 T-TT-TAT TTT
20029770 CTTTAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
5 14 0.32
6 18 0.41
7 8 0.18
8 4 0.09
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:20029769 original size:28 final size:28
Alignment explanation
Indices: 20029713--20029774 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
20029703 TTTATCTTAA
* *
20029713 TTTTATTTTTATTTTTGTTTTACTTTTT
1 TTTTATTTTTATTTTTATTTTACTATTT
*
20029741 TTTTTTTTTTATTTTTATTATT-CTATTT
1 TTTTATTTTTATTTTTATT-TTACTATTT
20029769 TCTTTA
1 T-TTTA
20029775 AATAAAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.81
Consensus pattern (28 bp):
TTTTATTTTTATTTTTATTTTACTATTT
Found at i:20029873 original size:58 final size:59
Alignment explanation
Indices: 20029777--20030071 Score: 400
Period size: 58 Copynumber: 5.0 Consensus size: 59
20029767 TTTCTTTAAA
* *
20029777 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
** *
20029838 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
20029896 TAGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
20029956 TAAAACTAAATTTCCAAAAAAA-TATTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20030014 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
20030072 CTACACAAGA
Statistics
Matches: 209, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
58 96 0.46
59 61 0.29
60 45 0.22
61 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20029916 original size:118 final size:117
Alignment explanation
Indices: 20029777--20030071 Score: 423
Period size: 118 Copynumber: 2.5 Consensus size: 117
20029767 TTTCTTTAAA
20029777 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * * *
20029842 AATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
64 AATAAATTTCCAAAAAAAGAGTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCT
* * *
20029896 TAGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * *
20029961 CTAAATTTCCAAAAAAATATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
* *
20030014 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
20030072 CTACACAAGA
Statistics
Matches: 159, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
117 47 0.30
118 87 0.55
119 25 0.16
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20030705 original size:26 final size:26
Alignment explanation
Indices: 20030665--20030717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20030655 CCGATCCGAT
20030665 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
20030691 CTTAGACTAGG-AATGAACTCCATATG
1 CTTAGACT-GGCAATGAACTCCATATG
20030717 C
1 C
20030718 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:20031587 original size:26 final size:26
Alignment explanation
Indices: 20031558--20031610 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20031548 CCAGTTTGAT
20031558 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20031584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20031610 C
1 C
20031611 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20032497 original size:26 final size:26
Alignment explanation
Indices: 20032458--20032510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20032448 CCGGTCTTAT
* *
20032458 CTTAGACCGAGAATGAACTCTGTATG
1 CTTAGACCGAGAATCAACTCCGTATG
* *
20032484 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACCGAGAATCAACTCCGTATG
20032510 C
1 C
20032511 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATCAACTCCGTATG
Found at i:20033365 original size:902 final size:901
Alignment explanation
Indices: 20030557--20037052 Score: 8105
Period size: 902 Copynumber: 7.2 Consensus size: 901
20030547 CACTACCGAA
* * * ** ***
20030557 CAGGTTCTTCGGCGATGCTCCGACGATGGCACCCCGACGAAGAAAAATATGGCACCAGCACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
* * * * *
20030622 TCGATCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGCAATGAACTCCA
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
* * * *
20030687 TATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCAG-
131 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GC
* * * * * *
20030751 TCAGCCGACCAGAGGGGTGGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC
195 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
20030816 AATCATACTA-TCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCAA
260 AATCCTACTACT-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * ** * * * *
20030880 ATCCAATCGAAAAAATGAGTGGGTGGGTGGGCAGGCGGGCACTACGTCGGCCAAAGAGACGGGAT
324 AGCCAAT-GACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* * * *
20030945 GCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTAAAATTTCTGCATGCCA
388 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
**
20031010 ATGCCATTTTTATGGCTTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
453 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
20031075 CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAGAA
517 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA
*
20031140 TTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
582 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGC
* *
20031205 ACAAAAAACTTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCC
646 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
20031270 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
711 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
20031335 TGTGAGTTCTCT-AGGTTTGATGAGGGACAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
776 TGTGAGTTCT-TGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
20031399 TCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCTGAAACCCCAATGCCGTCGGT
839 TCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * *
20031461 CAGGTTCT-C--CGA--------CGATGGTGCCCCGATGAAGAAAAATACGGCACCAGTACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
** * * **
20031515 CCGAGCATAGCATGTGCTGTCGTAACCCTCGGTCC-AGTTTGATCTTAGACTGGGAATGAACTCC
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCC
* * *
20031579 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCGC
130 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * ** * * *
20031644 TCAGTCGACCAGAGGGGCGAGATGCGTAAGCTGAGGATCGACCGAGTCCCCATCTACGTGCTGCC
195 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * **
20031709 GATCC-AGCTACCGCAACCCTCAGTCTGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCTA
260 AATCCTA-CTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
20031773 AGCCAATCGATGAAACG-A---GTGGACGGGCGGGCGGGCACTACGTCTGCCAGAGAGACGGGAG
324 AGCCAAT-GACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
*
20031834 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCA
388 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
**
20031899 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGG
453 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
20031964 CAAGACGACTCGTTTTCTATTTTTTATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAT
517 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
20032029 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTTTTGGCACGC
582 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGC
* *
20032094 ACAAAAAAGTT-AGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG-AAAAAGTGTCCC
646 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * **
20032157 CATTTCAGACACTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTCCAGGGGG
711 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20032222 TGTTAGTTCTTAAGGTTTGATGAGGGATAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATC
776 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** * *
20032287 GCACATCATGTATGCACACAGCCCCC-CCGAACCCCCGATCGCTGGAACCCCAATGCCACCGGT
841 GCACATCATG--TGCGCACA-CCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
** * * *** ** * *
20032350 CAGGTTCTCCGGTGAAGCTCCGACGATGGTGCGTTGGTGAAGAAAAATG-AGGCCCCAACACATG
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAGCACATG
* ** * * ** * * *
20032414 CACGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCGGTCTTATCTTAGACCGAGAATGAACTCT
65 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
* *
20032479 GTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGC
130 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
20032544 TCAGCCAGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGTTCCCCCTCTACGTGCTGTC
195 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
20032609 AATCCTACTACTGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATAAACTCCTTATGCTTAA
260 AATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
20032674 GCCAACTGACGAAACGAACGGGCAGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAAATGGGATG
325 GCCAA-TGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
20032739 CGTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGCCTGCCAA
389 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * * *
20032804 TGCCAATTTCATGGCTTGTAAATTCATACAATGGT-CTTAAGCCTTTACGTGAAGTTTCATTGCA
454 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20032868 AGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
519 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
20032933 TTTTTGGAAGGAGTTTTGGCCGCAAACTTGGTAGATGTGATCCTTGTATTTTTTCTGGCACGCAC
584 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TGGCATGCAC
20032998 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
648 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
20033063 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
713 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20033128 TGAGTTCTGGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
778 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
20033193 ACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAACGCCGTCGGT
843 ACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
*
20033252 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
* * **
20033317 CCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTGG
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
* * * * **
20033382 TATGCTTAGACTGGCAATGAACTTCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGGTAGCT
131 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * *
20033447 CAGCCAGCCAGAGGGGCGGGAT--GCAATCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCA
196 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
* * * * * *
20033510 ATCCTGCTACTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCTTATGCTTAAG
261 ATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
20033575 CCAACTGACGAAACGAGCAGGCGGGCGGGCGAGCGGCCACTACGTCGGCCAGAGAAACGGGATGC
326 CCAA-TGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
**
20033640 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
390 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
20033705 GCCAATTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCA
455 GCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20033770 AGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTCTTTGCGGTTCGGGATTTTTTAAAATA
519 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-
* * * * *
20033835 TTTTT-GAAAGGGGTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTACTTTTTTTGGCTTGCA
583 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCA
* * * **
20033899 TAAAAAAATTCAGCTAAAAACTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAATTTGTCCCC
647 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
20033964 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGT
712 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* **
20034029 GTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATCG
777 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
20034094 CACATCATGTGCGCACACCCCCCCTGGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGT
842 CACATCATGTGCGCACACCCCCTC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* *
20034155 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACGAAGAAAATTGCAGCACCAGCACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
* * * * *
20034220 CCGAGCCCAGTATGTGCTGCTGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTG
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
* * * *
20034285 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAACGTGCGGACACT
131 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
20034350 CAGCCGGCCAGAGGGGCGGGATGGGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGCCA
196 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
* * * * * * *
20034415 ATCATGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCCTAAG
261 ATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
20034480 TCGAT--CGACAA--AACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGTGATGC
326 CCAATGACGA-AACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
20034541 GCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAT
390 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * * *
20034606 GCCATTTTTATGGCCTGTAAATTCATACAACGGTCCCTTAAGCCATCATGTGAAGTTTCATGGAA
455 GCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * * *
20034671 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGCTCGAGATTTTTTTAAATT
519 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
20034736 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGG-AGGCGTGATCCTTGTATTTTTGTTGGTATGCAC
584 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC
* *
20034800 AAAAAAATTTAGC-AGAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGT-CCC
648 AAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
20034863 ATTTTCAGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGT
712 A-TTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
20034927 GTGTGAGTTCTTGAGGTTTGATTGAGGGATAGGGGGCCAATATAAAGGGCCAAGTACTAGCACCC
775 GTGTGAGTTCTTGAGGTTTGA-TGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCC
* * * *
20034992 ATTGCACATCATGTGTGCACA-CCCCT--G--CCCCTGATCGCCGGAACCCCAATGCCACC-GT
838 ATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * **
20035050 CAGGTTCTCCGGTGATGCTCCGAGATGCTCCGGTGATGGTG-CCCGATGAAGAAAAATATAGCAC
1 CAGGTTCTCC---GA-----C--GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAC
* *
20035114 CAGC-CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGA
56 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGG-
* * * * *
20035178 AATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAGC
120 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * *
20035243 GTGCGGGCGTTCAGCTGGCCAGAGGGGC-GAATGCGTAAGTCGGGGATCAGCCGGGGTCCCCCTT
185 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTC
* ** * * * **
20035307 TGTGTGCTATCGAT-CTACTGTCAT-AAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAAC
249 TGCGTGCTGCCAATCCTACT-AC-TGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* ** * * * * **
20035370 TCGGTATTTCTAAGCCAATCGATGAAACCAACAGGCGGGCGGGCGGGCGGGCACTACGCCGGTAA
312 TCCGTATGCCTAAGCCAAT-GACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
* * * * *
20035435 GAGAGACGGGATGTGCAAGCCGTGGATTGATTGGGTGGTAGGTGGGTTTAGACATATCTTCATAT
376 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * * * *
20035500 TTCTGTGTGCCAATGCCATTTTTGTGG-TTGTAAATTCATAGAATCGTCCCTTAAGCCTTCACAT
441 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGT
* * *
20035564 GAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
505 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGG
* *
20035629 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC-T--TAGACGTAATCCTTGTATTT
570 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* ** ** *
20035691 TTGTTGGTATGTGCAAAAAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCA
635 TT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
20035756 AAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
699 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
** * *
20035821 TCTTTAAAAGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCTAATATAAGGGCCAAGTA
764 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
20035886 CCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCCGACCCCCCAGATCGCCGGAACCC
829 CCAGCACCCATCGCACATCATGTGCGCACACCCCCT-----CGGCCCCCCCGATCGCCGGAACCC
20035951 CAATGCCGCCGGT
889 CAATGCCGCCGGT
** * ** * * *
20035964 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGCAAATTGCGGCACCAGCACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
** * * *
20036029 CCGAGCCCAGTGTGTGCTGCAGTAACCCTCGGTCCGGGAATGAACTCCATATGCTTAGACTGGGA
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC------G-A-TCC-GAT-CTTAGACTGGGA
* * *
20036094 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAGTG
121 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
20036159 TGCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTG
186 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * ** * * * * *
20036224 CGTGCTACCGATCTTGCTGTTGCAACCCTTGGTCTAGTCTCATCTTATACTGGGAATGAACTTCG
251 CGTGCTGCCAATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * * *
20036289 TATGCCTAAACCAACCGACGAAACG-A-------GTGGGCAGGCGGGCACTGCGCCGGCCAGAGA
316 TATGCCTAAGCCAA-TGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * *
20036346 GACGGGTTGCGCAAGCTGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
380 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20036411 GCATGCCAATGCCATTTTGATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACATGAAG
445 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAG
* * *
20036476 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATT
509 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATT
* ** ** * *
20036541 TTTTAAAATTTTTTCGGTAGGAGTTTTATCCCCAAACTTGGGGGGCGTGATCCTTGTATCTTTGT
574 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTT
* * * *
20036606 TGGCATGCACAAAAAGATTCTGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
638 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
20036671 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTT
703 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
20036736 TAAGGGGGTGTGAGTT-TTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
768 TAAGGGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
20036800 GCACCCATCGCACATCATGTGCGCACAGCCCCT-GGCCCCCTCCGATCGTCGAAACCCCAATGCT
832 GCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCC-CCGATCGCCGGAACCCCAATGCC
20036864 GCCGGT
896 GCCGGT
* * * * * * *
20036870 TAGGTTCTCCGACGACGCTCCGGCAATGGTGCCCCGACAAAG-AAAATGCGGCACCGGAACATGC
1 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
* * * ** *
20036934 TCGAGCCCAGCTTGTGCAGCCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCTG
66 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
* * ** *
20036999 TATGCTTAGACTAGGAATGAACTCCGTATGGCTAAACCAACCGACGAAACGAGC
131 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
20037053 TGGTGGGCGG
Statistics
Matches: 4871, Mismatches: 615, Indels: 221
0.85 0.11 0.04
Matches are distributed among these distances:
886 44 0.01
887 97 0.02
888 47 0.01
889 324 0.07
890 6 0.00
892 5 0.00
893 265 0.05
895 79 0.02
896 27 0.01
897 3 0.00
898 4 0.00
899 11 0.00
900 617 0.13
901 334 0.07
902 743 0.15
903 396 0.08
904 540 0.11
905 293 0.06
906 99 0.02
907 232 0.05
908 242 0.05
909 1 0.00
910 2 0.00
911 220 0.05
912 4 0.00
913 28 0.01
914 17 0.00
915 157 0.03
916 34 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCA
ATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAATGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
Found at i:20033400 original size:26 final size:26
Alignment explanation
Indices: 20033360--20033410 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20033350 CCGATCCGAT
* *
20033360 CTTAGACTGGGAATGAACTTGGTATG
1 CTTAGACTGGCAATGAACTTCGTATG
20033386 CTTAGACTGGCAATGAACTTCGTAT
1 CTTAGACTGGCAATGAACTTCGTAT
20033411 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTTCGTATG
Found at i:20034299 original size:26 final size:26
Alignment explanation
Indices: 20034263--20034315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20034253 CCGGTTCGAT
*
20034263 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20034289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20034315 C
1 C
20034316 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.