Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 111 of 117
Found at i:20036100 original size:26 final size:26
Alignment explanation
Indices: 20036064--20036128 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
20036054 CCCTCGGTCC
20036064 GGGAATGAACTCCATATGCTTAGACT
1 GGGAATGAACTCCATATGCTTAGACT
20036090 GGGAATGAACTCCATATGCTTAGACT
1 GGGAATGAACTCCATATGCTTAGACT
20036116 GGGAATGAACTCC
1 GGGAATGAACTCC
20036129 GTATCCCTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
GGGAATGAACTCCATATGCTTAGACT
Found at i:20037015 original size:26 final size:26
Alignment explanation
Indices: 20036977--20037028 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20036967 CCGATCCGAT
* *
20036977 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20037003 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20037029 GCTAAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20037746 original size:26 final size:26
Alignment explanation
Indices: 20037717--20037769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20037707 TCGGTCCGAT
* *
20037717 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
20037743 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
20037769 C
1 C
20037770 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:20038639 original size:25 final size:26
Alignment explanation
Indices: 20038605--20038656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20038595 CTGGTCCGAT
*
20038605 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20038630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20038656 C
1 C
20038657 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20039524 original size:26 final size:26
Alignment explanation
Indices: 20039486--20039538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20039476 CTGATCTGAT
*
20039486 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
*
20039512 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
20039538 C
1 C
20039539 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:20040183 original size:897 final size:892
Alignment explanation
Indices: 20037003--20041823 Score: 6149
Period size: 897 Copynumber: 5.4 Consensus size: 892
20036993 ACTCTGTATG
* * * *
20037003 CTTAGACTAGGAATGAACTCCGTATGGCTAAACCAACCGACG--AA-A-C-GAGCTGGTGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGT-GGCGG
* * * *
20037063 GCGGGCAC-GCGCCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
20037127 TTTAGGCACATCTTCAAATTTCTGCACGCCAA-GCCATTTTTATGGCTTGTCAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
20037191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAAGGACTCGTTCTCTATTTTTCACGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * **
20037256 AAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGAACCCAAACTTGGT
260 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-TTGGT
** * * *
20037321 AGACAAGATCCTTTTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
20037386 AGACTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
20037451 CCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGTGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
20037516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACAAACCCCCCCGG-CCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--A-CCCCCCGGCCCCC
* *
20037580 CCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-AGCGATGGTGCCCC
581 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCC
** * * * * *
20037644 GACGAAGAAAAATGCGGCTCCTGCACATGCCCGAGCCCAGGATGTGCTGTCGTAACCCTCGGT-T
645 GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCT
* * *
20037708 CGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCTGTATGCCTA
710 -GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * **
20037773 AGTCAAATCACGTAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCTAGG
774 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG-GATGCGCAAGCCGGG
* * *
20037838 GATCGACCGGGT-CCCCTCTGTGTGC-TGCGATCCTGCTGCCACAACCTTGGTTCTGGT-TGAT
838 GATCGGCCGGGTCCCCCTCTGTGTGCTTCCGATCCTGCT------A-C-TGGTTC-GGTCCGAT
* * * * * *
20037899 GTTAGATTGGGAATGAA-TCCGTATGCCTAAGCCAACTGATGAAATGAGC-GTGCGGGTGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGT-GGCGG
* *
20037962 GC-GGCACTACGT-GGCGCAGAGAGAC-GG-TGCGCAAGCCATGGATCGAGAAGGGTGGTAGGTG
65 GCGGGCACTACGTCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTG
* * * *
20038023 GATTATAGG-AGGCCATCTT-ATATTCCTGCATG-CAATG-CATTTTTATGG-TTGTAAATTGAT
128 GGTT-TAGGCA---CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
20038083 ACAATGGT--CTTAAGCCTTCA-GTGAAGTTT-ATGGCAAGACGACTCGTTTTCTATTTTCCACG
189 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * **
20038144 ATTTT-GGAA-TTTTTGCGG-TCGGGA-TTTTT-AAGTTTTTTCAAAAGTGAGTTTTGG-CCCAA
254 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAA
* * * *
20038203 TTTGGTAGAC-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTCCAGCTTCAAACCTCG
318 ATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TT-CAGC-TAAAAACTCG
20038267 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
380 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
20038332 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
20038397 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGGGCACACCCCCCG
510 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* ** * * * * * *
20038462 ACTGCCCCGACCGTCGGAACCCTAATGCCGTCGGTCAGGTTTTTCGACGATGCTCCGACGATGGT
575 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* *
20038527 GCCCCGGTGAAGAAAAATGCGGCACCAGCACAGGCCTGAGCCCAGCATGTGCTGCCGTAACCCTC
640 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
*
20038592 -AGTCTGGTCCGATCTTAGACT-GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
705 GA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
20038655 GCCTAAGTCAACCCATGAAACGAGCTTGCAGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAG
769 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC-GGATGCGCAAG
* * * * *
20038720 CCGGGGATCGGCCGGGTCCCTCTCTGTGTG-TT--G--CCTACTA-TCGGTCCAGTCTGAT
833 CCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTTCCGATCCTGCTACT-GGTTCGGTCCGAT
* *
20038775 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AA-A--GGAGTGGGTGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGTGG-CGG
* ** * * *
20038835 GCGGGCACTACG-CTGGCCAAAGAGATAGGATGTGCAAGCCATGGATCGATAGAGTGGTAGGTGG
65 GCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
20038899 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTATGGCTTGTAAATGCATACAAT
129 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
20038963 GGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
20039028 CGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CGTG
259 CGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTG-G
* * *
20039091 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
20039156 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * **
20039221 ACCTGTAAAGTCTCAAATGCTCTTTAAGGGGTTACGAGTTCTCGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
20039286 GCCACTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGGCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
** * * *
20039351 GATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTGATGATGGTGCCCCGGT
583 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGT
* * *
20039416 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCTGAT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGT
* * *
20039481 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTCGGAATGAACTCCGTATGCCTAAGTC
713 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
20039546 AACCAATGAAACGAGTGTGCGGGCTCTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATC
778 AACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG-CGGATGCGCAAGCCGGGGATC
** *
20039611 GATCGGGTCCCCCTTTGTGTGCTTCCGATCCTGCTACTGGTTCGGTCCGAT
842 GGCCGGGTCCCCCTCTGTGTGCTTCCGATCCTGCTACTGGTTCGGTCCGAT
* *
20039662 CTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGACGGGTAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGC-GG-AG-CGGGT-GG
* *
20039727 CGGGCGGCCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
62 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
20039792 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAACTT-ATAC
127 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATAC
20039856 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAA
191 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-A
* * *
20039921 TTTT-GAAA-TTTTTGCAGTTAGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCTAAT
255 TTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAT
* * ** * *
20039984 ATGGTAGACGAGATCCTTGTATTTTTGCTGGCATTTACAAAAAAATTCAACAAAAAACTCGAAGT
320 -TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * * * *
20040049 GCACAAGATTTTGCGACCTTTTGAAAAAGGTGTCCCCATTTTATACACTTTAACGGCTACTGGCA
384 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20040114 GCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTATCAGTTCTCGAGGTTTGATGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
20040179 GGGGGCCAATATAAGGGCCAAGTTCCATCACCCATCGCACATCATGTGCGCACACCCACCCGACC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCC
* * * * * * * *
20040244 CCCCCGATCGTC-GAAACCCAATACCGTCAGTTAGGTTCTCCGACAATGCTCCGACGATGGTGGC
578 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * *
20040308 CCGGCGAAGAAAAATGCAGCACCAGCA-ATTGCCTGAGCCTAGCATGTTCTGCCGTAACCCTCGG
643 CCGGTGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGA
* *
20040372 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATTAACTCCGTATGCC
707 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20040437 TAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA-ACTGGCCAGAGGGGCGGGATGCGCAAG-C
772 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGC-GGATGCGCAAGCC
** * * ** * *
20040500 GGAGGATCGGCCGCATCCCCCTCTGTGTGCTGCCGATCCTGCTGCCCGTCCGATCC-AGT
835 GG-GGATCGGCCGGGTCCCCCTCTGTGTGCTTCCGATCCTGCTACTGGTTCGGTCCGA-T
20040559 CTTAGACTGGGAATGAACGT-CGTATGCCTAAGCCAACCGACG--AA-A-C-GAGC--G-GGCGG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGTGGCGG
* * *
20040615 GTGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* **
20040680 TTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
20040745 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
***
20040810 GAAACTTTTAATGGTTCGAGATTTTTTAAAATCTTTTTC-GAAGGAGTTTT-GCCCCAAACTTGG
260 GAAACTTTTTGCGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAA-TTGG
* * *
20040873 TAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
20040938 AAGATTTTGTGACCAATTGAAAAAAGCGTCCCCATTACAGACACTTTAATTGCTATTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
20041003 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
20041068 GCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* *
20041133 GATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGCTCCGACGAT
583 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CG--G---C---GATGCTCCGACGAT
*
20041198 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCCGAGGCCAGCATGTGCTAC
637 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGA-G--C----CCAGCATGTGCTGC
* * * * * *
20041263 CGCAACCCTTTGTTC-GGTTCGATCTTAGACTGGGAATAAACTCCGCATGCTTAGACTGGGAATG
695 CGTAACCC-TCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
20041327 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAG-CGAGCCAAAGGGGCG
759 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCG-GCCAGAGGGGCG
* * * *
20041391 TGATGCTCAAGCTGGGGATCGGCCAGGTCCCCCTCTGTGTGCTGCCGATCCTGCTAC-GG-TCTG
823 -GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTTCCGATCCTGCTACTGGTTC-G
20041454 GTCCGAT
886 GTCCGAT
* * * ** *
20041461 CTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTAG-GCGGGCGGACGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGTGG-CGG
* *
20041525 GTGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
20041590 TTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
20041655 GTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
20041720 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTCGT
260 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-TTGGT
*
20041785 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
20041824 GGCCAATATA
Statistics
Matches: 3430, Mismatches: 370, Indels: 235
0.85 0.09 0.06
Matches are distributed among these distances:
872 8 0.00
873 22 0.01
874 34 0.01
875 45 0.01
876 40 0.01
877 34 0.01
878 10 0.00
879 36 0.01
880 3 0.00
881 330 0.10
882 146 0.04
883 27 0.01
884 64 0.02
885 439 0.13
886 35 0.01
887 209 0.06
888 152 0.04
889 25 0.01
890 199 0.06
891 7 0.00
892 8 0.00
893 6 0.00
894 36 0.01
895 141 0.04
896 206 0.06
897 535 0.16
898 63 0.02
899 44 0.01
900 11 0.00
901 8 0.00
902 46 0.01
903 164 0.05
904 7 0.00
905 1 0.00
906 2 0.00
907 1 0.00
908 1 0.00
909 8 0.00
910 229 0.07
911 48 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGAGCGGGTGGCGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGCC
GGGTCCCCCTCTGTGTGCTTCCGATCCTGCTACTGGTTCGGTCCGAT
Found at i:20040419 original size:26 final size:26
Alignment explanation
Indices: 20040383--20040435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20040373 CTGGTCCGAT
*
20040383 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20040409 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20040435 C
1 C
20040436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20041322 original size:26 final size:26
Alignment explanation
Indices: 20041286--20041338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20041276 TCGGTTCGAT
20041286 CTTAGACTGGGAATAAACTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
20041312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
20041338 C
1 C
20041339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:20042056 original size:26 final size:26
Alignment explanation
Indices: 20042027--20042079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20042017 CCTATCCGAT
20042027 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
20042053 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20042079 C
1 C
20042080 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20042962 original size:26 final size:26
Alignment explanation
Indices: 20042926--20042978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20042916 CTGGTCTGAT
20042926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20042952 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20042978 C
1 C
20042979 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20043857 original size:26 final size:26
Alignment explanation
Indices: 20043828--20043879 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20043818 TGATCCGATA
* *
20043828 TTAGGCTGGGAATAAACTCCGTATGC
1 TTAGACTGCGAATAAACTCCGTATGC
*
20043854 TTAGACTGCGAATGAACTCCGTATGC
1 TTAGACTGCGAATAAACTCCGTATGC
20043880 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATAAACTCCGTATGC
Found at i:20044742 original size:26 final size:26
Alignment explanation
Indices: 20044713--20044764 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20044703 TGATCCGATA
* *
20044713 TTAGGCTGGGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20044739 TTAGACTGCGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20044765 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:20045232 original size:893 final size:887
Alignment explanation
Indices: 20041824--20045255 Score: 4337
Period size: 893 Copynumber: 3.8 Consensus size: 887
20041814 GCATAAAAAA
* * * * * * *
20041824 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGTAGACCCCCCTCGGCCCC
1 GGCCAATAAAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACA-CCCCC-CGG-CCC
* * * * * * * *
20041889 CCCGATCGTTGGAACCCTAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGACGATAGAGCCCC
63 CCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT--G-C-CTCGA----C
* * * * * *
20041954 AATGAGGAAAAATGTGGCACCAGCACATGGCCGATCCTAGCATGTGCTACTGCAACCCTCGATCC
120 --GGA-GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGT-C
* * *
20042019 T-ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
181 TGATCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTA
** *
20042083 AGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
246 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
** * * * * * * * * * *
20042148 GATCGATCAGGTCCCCCTCTGCGTGCTGTTGAT-CTGGCTGCCATAACCCTTGCTCTGGTCTGAT
311 GATCGGCCGGGTCCCCATCTACTTGCTGTCGATCCT-TCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
20042212 CTTAGCCTGGGAATGAACTCCGTATGGCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGCGGG
375 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCCGGCGGG
* *
20042277 CACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
439 CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
20042342 GTACATCATCATATTTTTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCT
504 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
20042407 TTAAGCCTTCCCATGAAGTTTCAAGGCAACACGACTCGTTTTCTATTTGTCAGGATTTTTG-AAT
569 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAAC
* ** * ** * * * *
20042471 TTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAGAAA-GAGAATTAGCCCCAAACTTGGTAGAA
634 TTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCAAAAAGGAGTTTTGGGCACAAACTTGGTAGAC
* * * * *
20042535 GTGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCATCTAAAAAG-TTGAAGTGTACAAGA
699 GTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAAGCTCGAAGTGTACAAGA
* *
20042599 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
764 TTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
20042664 GTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
829 GTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTC-CGAGGTTTGATGAGGGATAGGG
* * * * *
20042724 GACCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGGCCCCCC
1 GGCCAATAAAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACACCCCCCGG--CCCC
* * * * ** * *
20042789 CCGATCGTCGGAACCACAATGCCGCCGGTCAGGTTCTTCGATGATGGTCCGACAATGGAGCCCCA
64 CTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT--G-C-CTCGA----C-
* * * * *
20042854 GGGAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCTAGCATGTGCTACCGTAACCCTCGGTCTG
120 -GG-AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCTG
* * * * *
20042919 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
183 ATCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAG
* * * *
20042984 TCAACCCATG-AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGA
248 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
20043048 TCGGTCGGGTCCCCATCTACTTGCTATCGATCCTTCTGTCACAATCCTCGGTTCGGTCTGATCTT
313 TCGGCCGGGTCCCCATCTACTTGCTGTCGATCCTTCTGCCACAACCCTCGGTCCGGTCTGATCTT
* *
20043113 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC-A------AG-CGACGGGCACT
378 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCCGGCGGGCACT
* * * * *
20043170 ACATCGACTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAA
443 ACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20043235 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC-TGTAAA-TCATACAATGGTCCCTTAA
508 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
20043298 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTCGTTTTCTATTTTTCTAGGATTTTTGACAAAT
573 GCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTC-AGGATTTTTG--AAAC
* *
20043363 TTTTTGCGGTTCAAAGATTTTTTATACACCAATTTCTTGCAAAAAAGAGTTTTGGGCACAAAC-T
634 TTTTTGCGGTTC-AAGA-TTTTT-TA-A--AATTT-TTTCAAAAAGGAGTTTTGGGCACAAACTT
* * *
20043427 GTGTAGACGTGATTCTTCGTAATTTTTCTTGG-AAGCACAAAAAAAATCAGCTAAAAAACTCGAA
692 G-GTAGACGTGATCCTT-GT-ATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAAGCTCGAA
20043491 GTGCGTACAAAGATTTTTGTGACCATATCGAAAAAAGTGTCCCCATTTCCAGACACTTTAATGGC
754 GT--GTAC-AAGA-TTTTGTGACCAT-TCGAAAAAAGTGTCCCCATTT-CAGACACTTTAATGGC
*
20043556 TACTGGTAGCAAACCTTGTAAAATCTCAACATGCTCTGTAAGGGGCGTGTGAGTTTCCTGAGGTT
813 TACTGGCAGCAAACC-TGTAAAATCTCAA-ATGCTCTGTAAGGGG-GTGTGAG-TTCC-GAGGTT
20043621 TGATGAGGGATAGGG
873 TGATGAGGGATAGGG
* * * *
20043636 GGCCAATATAAGGGGCCAAGAAGCAGACACCCATCGGACATCATGTGTGCACAACCCCCGACCTC
1 GGCCAATA-AAAGGGCCAAGAACCAG-CACCCATCGGACATCATGTGTGCACACCCCCCGGCC-C
20043701 CCTGAATCGTCGGAACCCCAATGCCGTC-GTCAGGTTCTCCGGCGATGGTGCCTCGACGGAG-AA
63 CCTG-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCTCGACGGAGAAA
* *
20043764 AATGTGGCACCAGACACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT-TGTCTGATCCGATA
127 AATGTGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCTGATCCGATA
* *
20043828 TTAGGCTGGGAATAAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCA
191 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
20043893 CGAAAGGAGTGTACGGGCGCTCAGCCGGCCAGCGGGGCAGGATGCGCAGGCCGAGGATCAGCCGG
256 CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
* * * **
20043958 GTCCCCATCTATTTGCTGCCGATCCTTCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTAAG
321 GTCCCCATCTACTTGCTGTCGATCCTTCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* **
20044023 AATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGTCGGC
386 AATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCCGGCGGGCACTACACCGGC
*
20044088 CAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
451 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * *
20044153 ATTTCTGTGTGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCAC
516 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
20044218 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTTGCGGTT
581 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAAC-TTTTTGCGGTT
*
20044283 CAAGATTTTTTAAAA-TTTTTC-AAAAGGAGTTTTGGGC-CCAACTTGGTAGACGTGATCCTTGT
645 CAAGATTTTTTAAAATTTTTTCAAAAAGGAGTTTTGGGCACAAACTTGGTAGACGTGATCCTTGT
* *
20044345 ATTTTTCTTGGCATGCACAAAAAAAATCAGCT-AAAGGCTCGAAGTGTACAAGATTTTGTGACAA
710 ATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAAGCTCGAAGTGTACAAGATTTTGTGACCA
* *
20044409 TTCGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
775 TTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
20044474 AATGCTCTGTAAAGGGGTGTGAGTTCGCAAGGTTTGATTAGGGATAGGG
840 AATGCTCTGTAAGGGGGTGTGAGTTC-CGAGGTTTGATGAGGGATAGGG
20044523 GGCCAATAAAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACACCCCCCGGCCCCCT
1 GGCCAATAAAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACACCCCCCGGCCCCCT
*
20044588 GATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCTCGACGGAGAAAAATG
66 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCTCGACGGAGAAAAATG
* * *
20044653 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTTGGTCTGATCCGATATTAGG
131 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCTGATCCGATATTAGA
*
20044718 CTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTACGTCAACCCACGAAA
196 CTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
20044783 GGAGCCTACGGGCGGTCAGCCGGCCAG-GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
261 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * * * *
20044847 CCTCTGCATGCTGTCGATCCTACTACCCCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGA
326 CATCTACTTGCTGTCGATCCTTCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
*
20044912 ACTCCGTATGCCTAAGCCAACCGACGAAACAAGTAGGCAGGTGGGCGGGCCGGCGGGCACTACAC
391 ACTCCATATGCCTAAGCCAACCGACGAAAC--G-A-GC-----GGCGGGCCGGCGGGCACTACAC
* *
20044977 CGGCCATAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
447 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
20045042 TCATATTTCTGCATGCCAATTCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCT
512 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
20045107 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGGAACTTTTTACG
577 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCG
*** * *
20045172 GTTGGGGA-TTTTTAAAATTTTTTC-GAAAGGAGTTTTGGGCACAAACTTGGTAGACGTGATCTT
642 GTTCAAGATTTTTTAAAATTTTTTCAAAAAGGAGTTTTGGGCACAAACTTGGTAGACGTGATCCT
*
20045235 TATATTTTTCTTGGCATGCAC
707 TGTATTTTTCTTGGCATGCAC
20045256 CGGTCGTCGA
Statistics
Matches: 2241, Mismatches: 225, Indels: 139
0.86 0.09 0.05
Matches are distributed among these distances:
883 22 0.01
884 189 0.08
885 154 0.07
886 16 0.01
887 76 0.03
888 31 0.01
889 124 0.06
890 13 0.01
891 38 0.02
892 68 0.03
893 249 0.11
894 9 0.00
895 6 0.00
896 1 0.00
897 23 0.01
898 167 0.07
899 213 0.10
900 89 0.04
901 112 0.05
902 195 0.09
903 5 0.00
904 4 0.00
905 6 0.00
906 14 0.01
907 24 0.01
908 37 0.02
909 28 0.01
910 129 0.06
911 31 0.01
912 82 0.04
913 35 0.02
914 51 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (887 bp):
GGCCAATAAAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACACCCCCCGGCCCCCT
GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCTCGACGGAGAAAAATG
TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCTGATCCGATATTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
CATCTACTTGCTGTCGATCCTTCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCCGGCGGGCACTACACCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGAT
TTTTTAAAATTTTTTCAAAAAGGAGTTTTGGGCACAAACTTGGTAGACGTGATCCTTGTATTTTT
CTTGGCATGCACAAAAAAAATCAGCTAAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTCGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTGTAAGGGGGTGTGAGTTCCGAGGTTTGATGAGGGATAGGG
Found at i:20045420 original size:25 final size:26
Alignment explanation
Indices: 20045392--20045443 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20045382 CCCATCCGAT
*
20045392 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20045417 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20045443 C
1 C
20045444 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20047169 original size:26 final size:26
Alignment explanation
Indices: 20047140--20047192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20047130 CTGGTCCGAT
* *
20047140 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20047166 CTTAGACTAGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
20047192 C
1 C
20047193 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:20048100 original size:26 final size:26
Alignment explanation
Indices: 20048064--20048116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20048054 CCGGTCCAAT
* *
20048064 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20048090 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20048116 C
1 C
20048117 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20048317 original size:924 final size:901
Alignment explanation
Indices: 20046262--20049275 Score: 3679
Period size: 924 Copynumber: 3.3 Consensus size: 901
20046252 CCAGTCCCAT
* * *
20046262 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGATACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
20046327 C-AGCCAGAGTGGCAGGATGCATAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG-CTGAT
66 CGAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GAT
* * * *
20046390 CCTACTACCACAACCCTCA-TTTCAGTCTGATCTTAGACTGGGAATGAAC-CCAGTATGCCTAAG
130 CCTGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCC-GTATGCCTAAG
* * * * * *
20046453 CCAACCGACGAAACAAGCAGGTG-GA-TGGACGGACGGGCACTACGTCGGCCAGAGAGACGGGTT
193 CCAACCGACGAAACGAGC-GG-GCGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAAACGGGAT
* * *
20046516 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACATGCCA
256 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCA
20046581 ATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
321 ATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** *
20046646 C-GAGACGACTTGTTTTCTATTTTTCACTATTTTCAAAACTTTTTGTGGTTGGGGATTTTTTAAA
386 CAG-GACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * **
20046710 ATTTTTTCGGATGGATTTTTGGCCCCAAGCTTGGTAGACATGATCCTTCCATTTTTGTTGGCATG
450 ATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* ** *
20046775 CATAAAAAAATTCAGCCAAAAACTCGAAGTCCACAAGATTTTGTGACCTTTTGAAAAAAA-TGTC
515 CACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAAGTGTC
*
20046839 CCAATTTCAGACACTTTAATGGCTAATGGC-AGCAAACCT-GTAAAATCTCAAATGCTCTTTAAG
579 CC-ATTTCAGACACTTTAATGGCTACTGGCAAGCAAACCTAGTAAAATCTCAAATGCTCTTTAAG
* * *
20046902 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATAAAAGGGCCAAGAACCAGCACC
643 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
20046967 CATCGCACATCATGTGCGCACA-CCCCT-CCCGGCCCCCTGATCGTCGGAAT-CCCAATGCCGCC
708 CATCGCACATCATGTGCGCACACCCCCTGCCC--CCCCC-GATCGTC-GAATACCCCATGCCGCC
* ** * * ** *
20047029 GGTCAGGTTCTCCGACGATAATCCGGCGATGGTGCCCCGGGGAAGAAAAATACGTCACCAGCACA
769 GGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* * *
20047094 TGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC-
834 TGCCCGAGCCCAGCATGTGCTACCGCAACCCT--GTCCGGTCC-ATCTTAGA-TGGGAATGAACT
20047158 TCTGTATG
895 TC-GTATG
* * *
20047166 CTTAGACTAGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20047231 CG-GCCAGACGGGTGGGATGAGCAAGCTGGGGATCGGTCGGGTCCCCCTAT-GGATGCTGTCGAT
66 CGAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG-TGCTGTCGAT
** * * * **
20047294 CC-GACTGTCGTAGCCCTCGGTCTGGTCT-ATTCTTAGACTGGGAATGAACTCAATATGCCTAAG
130 CCTG-CTACCGCAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
20047357 CTAACCGATGAAATGAGTGGGCG-GACGGGAGGGCGGGCACTACGCCGACCAGAGAAACGGCATG
193 CCAACCGACGAAACGAGCGGGCGAG-CGGGCGGACGGGCACTACGCCGGCCAGAGAAACGGGATG
* * * * *
20047421 CGTAAGCCGTGGATCGATAAGGTGGTAGGTAGGTTTAGGCAAATCTTCATATTTCTACATGTCAC
257 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAA
* * * *
20047486 TACCATTTTTATAGCTTGTAAATTCATACAATGGGCCCTCAAGCCTTCACGTGAAGTTTCATGGC
322 TTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
20047551 AGGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
387 AGGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
20047616 TTTTTCGAAAGGAATTTTT-GCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGC
452 TTTTTCGAAAGG-ATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * *
20047680 ACAAGAAAAATTTAAGCTAAAAAAACTCAAAAGCTGTACAAGATTTTGTGACCATTTCAAAAAAA
516 ACAA-AAAAA-TTCAGC--CAAAAACTC-GAAG-TGTACAAGATTTTGTGACCATTT-AAAAAAA
20047745 GGTGTCCCCCATTTTCTA-ACACTTTAATGGCTACTGGCCAAGCAAAACCTAGTTAAAATCTC-A
574 -GTGT--CCCA-TTTC-AGACACTTTAATGGCTACTGG-CAAGC-AAACCTAG-TAAAATCTCAA
*
20047808 ATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GTTTGATGAGAGATAGGAGGGCCATATATATAGGG
631 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGGCCA-ATATA-AGGG
*
20047872 CCAAGTACCAGCACGCGCATCGCACATCATGTGCACACACCCCCTGGCCCCCCCCGAGTCGTCGA
693 CCAAGTACCAGCAC-C-CATCGCACATCATGTGCGCACACCCCCT-GCCCCCCCCGA-TCGTCGA
*
20047937 ATACCCCATGACCGCCGGTCAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGACGAAGAAAA
754 ATACCCCATG-CCGCCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGACGAAGAAAA
** *
20048002 ATGTGGCACTAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGATCCGGTCCAATCTT
818 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC-TG-TCCGGTCC-ATCTT
20048067 AGATTGGGAATGAACTTCGTATG
880 AGA-TGGGAATGAACTTCGTATG
*
20048090 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
20048155 CGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGATC
66 CGAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
* * *
20048219 CTGTTACCGCAACCCTCAGTCGGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
20048284 ACCGACAAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGGGACGGGATGCGCA
196 ACCGACGAAACGAGCGGGCGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAAACGGGATGCGCA
* **
20048349 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTATGTGTCAATTCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAATTCC
* * * *
20048414 TTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCTTGAAGTTTCATGGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
* * *
20048479 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
391 CGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
20048544 TC-AGAACGATTTTTGGCACCAAACTTAGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAA
456 TCGA-AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
20048608 AAAAATTCAGCCAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTATTT
520 AAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCATTT
* * *
20048673 CAGACAGTTTAACGGCTACTGGCAA-CAAACCTA-TAAAATCTCAAATGCTCTCTAAGGGGGTGT
585 CAGACACTTTAATGGCTACTGGCAAGCAAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
20048736 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
650 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * *
20048801 CATCATGTGCGCACACCCCCCGCAGCCCCCGATCGTCGGA-ACCCCAATGCCGTCGGTCAGGTTC
715 CATCATGTGCGCACACCCCCTGCCCCCCCCGATCGTCGAATACCCC-ATGCCGCCGGTCAGGTTC
* * * *
20048865 TCCGGCGATGCTCTGTTGATGGTGCCCCGATGAAG-AAAATACGGCACCAGCACATGGCCAAGCC
779 TCCGGCGATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
20048929 CAGTATGTGCTATCGTAACCC--T-CGG----TC-----------TG-A-TTCG-AT-
844 CAGCATGTGCTACCGCAACCCTGTCCGGTCCATCTTAGATGGGAATGAACTTCGTATG
* *
20048965 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCTGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20049029 CTAGCCAGAGGGGCGGAATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC
66 CGAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
* * * * * * * *
20049094 CTGCTATCGTAACCCTC-GATCTGTTTTGATCTTAGACTGGGAATAAACTCTGTATGCCTGAGCT
131 CTGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
20049158 AACTGATGAAATGAGCGAGCGGGCAGGCGGACAGGCACTAGGCCGGCCAGA-AAGACGGGATGCG
195 AACCGACGAAACGAGCGGGCGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAA-ACGGGATGCG
* * * * *
20049222 CAAGTCATTGAACAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
259 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
20049276 GCGTGCCAAT
Statistics
Matches: 1837, Mismatches: 216, Indels: 143
0.84 0.10 0.07
Matches are distributed among these distances:
874 3 0.00
875 265 0.14
876 2 0.00
877 4 0.00
878 1 0.00
879 2 0.00
891 2 0.00
896 3 0.00
897 1 0.00
901 42 0.02
902 52 0.03
903 15 0.01
904 435 0.24
905 42 0.02
906 6 0.00
907 18 0.01
908 22 0.01
909 38 0.02
910 50 0.03
911 1 0.00
912 7 0.00
913 22 0.01
914 28 0.02
915 2 0.00
916 7 0.00
917 27 0.01
918 60 0.03
919 16 0.01
920 24 0.01
921 1 0.00
922 32 0.02
923 34 0.02
924 563 0.31
925 10 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
CTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAAACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAATTCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
CGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
TCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCATTTC
AGACACTTTAATGGCTACTGGCAAGCAAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCTGCCCCCCCCGATCGTCGAATACCCCATGCCGCCGGTCAGGTTCTC
CGGCGATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTACCGCAACCCTGTCCGGTCCATCTTAGATGGGAATGAACTTCGTATG
Found at i:20049813 original size:26 final size:26
Alignment explanation
Indices: 20049777--20049826 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20049767 CTAGTCTGAT
20049777 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
20049803 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
20049827 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:20050807 original size:4 final size:4
Alignment explanation
Indices: 20050798--20050827 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
20050788 GACGAAATGA
*
20050798 GCGG GCGG GCGG GCGG GTGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
20050828 ACTACACCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:20051513 original size:26 final size:26
Alignment explanation
Indices: 20051477--20051555 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
20051467 CCGGTCCGAT
20051477 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
* *
20051503 CTTAGGCTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
* *
20051529 CTTAGACTCGAAAAGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
20051555 C
1 C
20051556 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:20054542 original size:21 final size:21
Alignment explanation
Indices: 20054507--20054596 Score: 65
Period size: 22 Copynumber: 4.1 Consensus size: 21
20054497 TGGATGAAAA
*
20054507 ATGAGAAAAGAGAAAAAAGATG
1 ATGAAAAAAGAGAAAAAAGA-G
*
20054529 ATGAAAAAAG-GAAAAAAAAAG
1 ATGAAAAAAGAG-AAAAAAGAG
* * *
20054550 AAAGAAAAAAGAAAAAGAAAGAA
1 -ATGAAAAAAGAGAAA-AAAGAG
* *
20054573 ATGAAAAAATGAAAAAAAAAAG
1 ATGAAAAAA-GAGAAAAAAGAG
20054595 AT
1 AT
20054597 TCAAATTAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.04
22 42 0.78
23 10 0.19
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (21 bp):
ATGAAAAAAGAGAAAAAAGAG
Found at i:20054546 original size:22 final size:21
Alignment explanation
Indices: 20054519--20054590 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
20054509 GAGAAAAGAG
20054519 AAAAAAGATGATGAAAAAAGGA
1 AAAAAAGA-GATGAAAAAAGGA
* * *
20054541 AAAAAAAAGAAAGAAAAAAGAA
1 AAAAAAGAG-ATGAAAAAAGGA
* *
20054563 AAAGAAAGAAATGAAAAAATGA
1 AAA-AAAGAGATGAAAAAAGGA
20054585 AAAAAA
1 AAAAAA
20054591 AAAGATTCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
21 4 0.10
22 32 0.80
23 4 0.10
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAAAAGAGATGAAAAAAGGA
Found at i:20054566 original size:17 final size:16
Alignment explanation
Indices: 20054540--20054593 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 16
20054530 TGAAAAAAGG
20054540 AAAAAAAAAGAAAGAA
1 AAAAAAAAAGAAAGAA
20054556 AAAAGAAAAAGAAAGAA
1 AAAA-AAAAAGAAAGAA
* *
20054573 ATGAAAAAATGAAA-AA
1 A-AAAAAAAAGAAAGAA
20054589 AAAAA
1 AAAAA
20054594 GATTCAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 21 0.64
18 2 0.06
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (16 bp):
AAAAAAAAAGAAAGAA
Found at i:20055885 original size:42 final size:42
Alignment explanation
Indices: 20055838--20056233 Score: 602
Period size: 42 Copynumber: 9.5 Consensus size: 42
20055828 ATGATTGTCA
20055838 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
20055880 AGGAGCAATTTATTTTCC-AAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
*
20055921 AGGAGCAATTTACTTTCTC-AAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTC-CAAAAGTCGTGGTGCCTCTGTTTAG
*
20055963 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
20056005 AGGAGCAATTTACTTTCCAAAAGTCATGATGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* * *
20056047 AGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
20056088 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
20056130 AGGAGCAATCTATTTTTC-AAAGTCGTGATGCCTTTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
20056171 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* * *
20056213 AGAAGCAATTTATTTTTCAAA
1 AGGAGCAATTTACTTTCCAAA
20056234 GCAATTTATT
Statistics
Matches: 321, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
41 111 0.35
42 210 0.65
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.36
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:20055980 original size:83 final size:83
Alignment explanation
Indices: 20055838--20056234 Score: 652
Period size: 83 Copynumber: 4.8 Consensus size: 83
20055828 ATGATTGTCA
*
20055838 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
*
20055903 CATGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
* * *
20055921 AGGAGCAATTTACTTTCTC-AAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAA
1 AGGAGCAATTTACTTTC-CAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAA
*
20055985 GTCGTGGTGCCTCTATTTAG
64 GTCGTGGTGCCTCTGTTTAG
* *
20056005 AGGAGCAATTTACTTTCCAAAAGTCATGATGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
*
20056070 TGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
20056088 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
* *
20056153 CGTGATGCCTTTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
20056171 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTATTTTTCAAAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAG
20056235 CAATTTATTT
Statistics
Matches: 294, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
83 217 0.74
84 77 0.26
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:20056237 original size:17 final size:17
Alignment explanation
Indices: 20056215--20056251 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
20056205 CTGTTTAGAG
20056215 AAGCAATTTATTTTTCA
1 AAGCAATTTATTTTTCA
20056232 AAGCAATTTATTTTTCA
1 AAGCAATTTATTTTTCA
20056249 AAG
1 AAG
20056252 TCGTGGTGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (17 bp):
AAGCAATTTATTTTTCA
Found at i:20056265 original size:58 final size:59
Alignment explanation
Indices: 20056174--20056292 Score: 204
Period size: 58 Copynumber: 2.0 Consensus size: 59
20056164 TGTTTAGAGG
20056174 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTATTTTTCAA
1 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTATTTTTCAA
* * *
20056233 AGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAA
1 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTATTTTTCAA
20056291 AG
1 AG
20056293 TCATGGTGCC
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 44 0.77
59 13 0.23
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (59 bp):
AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTATTTTTCAA
Found at i:20056290 original size:41 final size:41
Alignment explanation
Indices: 20056233--20056484 Score: 380
Period size: 41 Copynumber: 6.1 Consensus size: 41
20056223 TATTTTTCAA
20056233 AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
* *
20056274 AGCAATTTATTTTTCAAAGTCATGGTGCCTTTGTTTAGAGG
1 AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
* * *
20056315 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGATG
1 AGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGG
*
20056357 AGTAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
*
20056398 AGCAATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGG
1 AGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGG
* *
20056439 AGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGG
1 AGCAATTTAT-TTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGG
20056482 AGC
1 AGC
20056485 TTTGGTAAAA
Statistics
Matches: 190, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 5 0.03
41 119 0.63
42 35 0.18
43 29 0.15
44 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (41 bp):
AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
Found at i:20056364 original size:141 final size:142
Alignment explanation
Indices: 20056091--20056375 Score: 493
Period size: 141 Copynumber: 2.0 Consensus size: 142
20056081 TGTTTAGAGG
*
20056091 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTCGT
1 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTCAT
20056156 GATGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAA
66 GATGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAA
20056221 TTTATTTTTCAA
131 TTTATTTTTCAA
* * *
20056233 AGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCAT
1 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTCAT
* *
20056297 GGTGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGATG-AGTA
66 GATGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGA-GAAGCA
20056361 ATTTATTTTTCAA
130 ATTTATTTTTCAA
20056374 AG
1 AG
20056376 TCGTGGTGCC
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
141 122 0.90
142 14 0.10
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (142 bp):
AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGTCAT
GATGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAA
TTTATTTTTCAA
Found at i:20056392 original size:83 final size:82
Alignment explanation
Indices: 20056233--20056484 Score: 389
Period size: 83 Copynumber: 3.0 Consensus size: 82
20056223 TATTTTTCAA
*
20056233 AGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCAT
1 AGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGT
*
20056297 GGTGCCTTTGTTTAGAGG
65 GGTGCCTCTGTTTAGAGG
* * *
20056315 AGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGATGAGTAATTTATTTTTCAAAGTCGT
1 AGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGT
20056380 GGTGCCTCTGTTTAGAGG
65 GGTGCCTCTGTTTAGAGG
*
20056398 AGCAATTTATTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCG
1 AGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAGTCG
* *
20056463 TTGAGCCTCTGTTTAGAGG
64 TGGTGCCTCTGTTTAGAGG
20056482 AGC
1 AGC
20056485 TTTGGTAAAA
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
82 51 0.33
83 75 0.48
84 29 0.19
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (82 bp):
AGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTG
GTGCCTCTGTTTAGAGG
Found at i:20056759 original size:21 final size:21
Alignment explanation
Indices: 20056735--20056852 Score: 63
Period size: 21 Copynumber: 5.7 Consensus size: 21
20056725 TGTATTTTAT
20056735 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATATGTA
* *
20056756 TATTT-TTATTTATT-TATTTT
1 TATTTATTA-TTATTATATGTA
* * *
20056776 TTTTCTGTTAATATTTATATGTA
1 TATT-TATTATTA-TTATATGTA
*
20056799 T-TTTA-T-TTA-TATAGTTCTA
1 TATTTATTATTATTATA--TGTA
20056818 TATTTATTATATATTATAAT-T-
1 TATTTATTAT-TATTAT-ATGTA
20056839 TATTTATTATTATT
1 TATTTATTATTATT
20056853 TTTATTATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
17 4 0.05
19 6 0.08
20 19 0.25
21 25 0.33
22 9 0.12
23 8 0.11
24 3 0.04
25 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (21 bp):
TATTTATTATTATTATATGTA
Found at i:20057928 original size:17 final size:16
Alignment explanation
Indices: 20057894--20057933 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20057884 TTAGATTAGG
*
20057894 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
20057910 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
20057927 TTTATTT
1 TTTATTT
20057934 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:20057963 original size:14 final size:14
Alignment explanation
Indices: 20057920--20057977 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20057910 TTTATCTTAA
20057920 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
20057932 TTTTGTTTTACTTTT
1 TTTTATTTTTC-TAT
20057947 TTTTATTTTTCTAT
1 TTTTATTTTTCTAT
*
20057961 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
20057975 TTT
1 TTT
20057978 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:20057969 original size:17 final size:18
Alignment explanation
Indices: 20057923--20057970 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
20057913 ATCTTAATTT
*
20057923 TATTTTTATT-TTTGTTT
1 TATTTTTATTATTTGTTC
*
20057940 TACTTTTTTTTATTT-TTC
1 TA-TTTTTATTATTTGTTC
20057958 TATTTTTATTATT
1 TATTTTTATTATT
20057971 CTATTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 12 0.46
18 11 0.42
19 3 0.12
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTATTATTTGTTC
Found at i:20058081 original size:58 final size:59
Alignment explanation
Indices: 20057985--20058277 Score: 378
Period size: 58 Copynumber: 4.9 Consensus size: 59
20057975 TTTCTTTAAA
* * *
20057985 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTGTCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
** *
20058046 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCGT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
20058104 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
20058164 TAAAACTAAATTTCCAAAAAAA-TATTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20058222 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
20058278 TCCTACACAA
Statistics
Matches: 202, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
58 94 0.47
59 59 0.29
60 42 0.21
61 7 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20058134 original size:118 final size:117
Alignment explanation
Indices: 20057985--20058277 Score: 401
Period size: 118 Copynumber: 2.5 Consensus size: 117
20057975 TTTCTTTAAA
*
20057985 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTGTCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * * *
20058050 AATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCGT
64 AATAAATTTCCAAAAAAAGAGTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCT
** * *
20058104 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * *
20058169 CTAAATTTCCAAAAAAATATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
* *
20058222 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTT
20058278 TCCTACACAA
Statistics
Matches: 155, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
117 46 0.30
118 85 0.55
119 24 0.15
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20058161 original size:28 final size:28
Alignment explanation
Indices: 20058070--20058161 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
20058060 CAAAAAAGGG
20058070 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
20058098 TTTCGTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
20058129 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
20058158 TTTT
1 TTTT
20058162 CTTAAAACTA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:20060718 original size:26 final size:26
Alignment explanation
Indices: 20060667--20060719 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20060657 CCGATCTTAT
**
20060667 CTTAGACCAGGAATGAACTCTGTATG
1 CTTAGACCAGGAATGAACTCCATATG
**
20060693 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
20060719 C
1 C
20060720 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:20060906 original size:889 final size:885
Alignment explanation
Indices: 20058781--20067652 Score: 10320
Period size: 895 Copynumber: 9.9 Consensus size: 885
20058771 CTTCGATGAT
* * * * * * *
20058781 GCTCCGATGATGGCGCCCCGACGAAGAAAAATATGGCACTAGCACATGCTCGATCCCAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
20058846 CTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTACGCTTAGACTAGG
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGG
* * *
20058910 AATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGCCGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
* * * * *
20058975 GCGGGATGCACAAGCCGGGCATCGGTCGGGTACCCCTCTGCGTGCTGTCGATCATACTG-TCGCA
195 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCT-GCA
* * * * * *
20059039 ACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCAAAGCCAATTGACAAAAT
259 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-GAA-
* * * * * * *
20059104 GAGTGGGTGGGTGGGCGGGCGGGCACGACGTCAGCCAAAGAGACGGGATGCACAAGCCGTAGATC
322 GA-------------CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
20059169 GATAAGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGC
374 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * *
20059234 TTGTAAATGCATACAACGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
439 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** * *
20059299 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAGAATTTTTTCGGAAGGAAT
504 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
20059364 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCT
569 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
20059429 AAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
634 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
20059494 ATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGT
699 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20059559 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
764 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
20059624 CACCCCCCCCGGCCCCCCGATTGCTGGAACCCCAATGCCGTCGGTCAGG-T-T------
829 CA--CCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAA
* * **
20059675 -CTCCGACGATGGTGCCCCGATGATGAAAAATACGGCACCAGTACATGCCCGAGCGTAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
20059739 CTGTCGTAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGCACGCTTAGACTGGG
66 CTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
* * * *
20059803 AATGAACTTCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCGTTCAGTCGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
* * * * * * *
20059868 GCGGGATGCGTAAGCTGAGGATCGGCCGAGTCCCCCTCTGCGTGCTG-CTGATCCTGCTACCGCA
195 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCTGCA
* **
20059932 ACCCTCAGTCTGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAAC
259 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--TG--AC
* * *
20059997 GAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
319 GA----A--GACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
20060062 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
378 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
20060127 AAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
443 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
20060192 TTTTTATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
508 TTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
20060257 GCCCCAAACTTGGTAGACGTGATCTTTGAATTTTTTTTGGCACGCACAAAAAAAGTT-AGCTAAA
573 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAA
*
20060321 AACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAAAG
637 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
20060385 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTTAGTTCTTGAGGTTTG
702 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
20060450 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTATGCACAC
767 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--TGCGCAC
* *
20060515 AGCCCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTTAGGTTCTCTAGCGAA
830 A--CCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTC--GCGAA
* * * * * *
20060575 GCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCGACACCAGCACATTCACGAGCCCAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
** **
20060640 CTGCCGCAACCCTCGGTCCGATCTTATCTTAGACCAGGAATGAACTCTGTATGCTTAGACTGGGA
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * * *
20060705 ATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
* * * * * ** * * *
20060770 CAGGATACGCAAGCCGGGGATCGGTTGGTTCCTCCTCTATGTGCTGTCAATCCTACTGCTGTAAC
196 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
* * * * * **
20060835 CCTCAGTCTAGTTTGATCTTAGACTGGGAATAAACTCCTTATGGTTAAGCCAACTGACGAA-ACG
261 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAGACG
* *
20060899 AGCGGGCAGGCGAGTGGGCGGGCACTACGTAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGA
326 AGCGGGCA--C---T--AC--G--C--CG--GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
20060964 TAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTGCCAATGCCAATTTCATGGCTT
376 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
20061029 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACAACTCGTTTTCT
441 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * *
20061094 ATTTTTCATGATTTTGGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTTGGAAGGAGT
506 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTTAAAA-TTTTTTCGGAAGGAGT
* * * *
20061159 TTT-GCCCCAAACTTGGTAGATAGTTGGTCCTTGTATTTTT-CTGGCCTGCAACAAAAAAATTCA
569 TTTGGCCCCAAACTTGGTAGA-CG-TGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTC-
*
20061222 AGCATAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCAGTTCAGACA
630 AGC-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20061286 C-TTAATGGCTACTGGCAGGCAAACCTATAAAATCTCACAATGCTGCTTTAAAGGGGGTGTGAGT
694 CTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCA-AATGCT-CTTT-AAGGGGGTGTGAGT
*
20061350 TCTGGAGGTTTGGAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCACCCATCGCAC
755 TCTCGAGGTTT-G-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCAC
* * * * * *
20061415 ACTCATGTCGCGCACA-CCCTCGGCCCCCTGATCACCGGAACCCCAACGCCACCGGTCAGGTTCT
817 A-TCATGT-GCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCT
20061479 C-C--A
880 CGCGAA
**
20061482 ------ACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20061541 CTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT-TGGTATGATTAGACTGGC
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGG
* * ** * * * *
20061605 AATGAACTTCGTATCCCTAAGTCAACCCTTGGAACGAGTGTGAAGGGCGTTCAGCCGGCCAGAGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGGGCGCTCAGCCGGCCAGAGG
* * * * * * * *
20061670 GGCAGGAT--GCAATCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTACTGTA
194 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCA
* * * * *
20061733 ACCCTTGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCTTATGCTTAAGCCAACTGACGAAAC
259 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA-
* *
20061798 GAGCGGGCGGGCGGGCGGGCGGGCGGACAGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGC
322 GA---------------------C-G--A-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
20061863 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
362 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
20061928 CAATTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
427 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20061993 ACGACTCATTTTCTATTTTTCATGATTTTCAAAACTCTTTGCGGTTCGGGATTTTTTAAAATATT
492 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TT
* * * * * *
20062058 TTT-GAAAGGGGTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTACTTTTT-TTGGCTTGCAT
556 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC
* * **
20062121 AAAAAAATTCAGCTAAAAACTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAATTTGTCCCCA
620 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
20062186 TTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
685 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
**
20062251 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATCGC
750 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
20062316 ACATCATGTGCGCACACCCCCCCTGGCCCCTTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
815 ACATCATGTGCGCACA-CCCCCC-GGCCCC-CCGATCGCTGGAACCCCAATGCCGCCGGTCAGGT
*
20062381 TCTCTGACGAT
877 TCTC-G-CGAA
* * * * * *
20062392 GCTCCGGCGATGGTGCCTCGATGAAGAAAATTGCGGCACCAGCACATGCCCAAGCCCAGTATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20062457 CTACTGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGA
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * * * *
20062522 ATGAACTCCGTATGCCTAAGTCTACCCACAAAATGAACGTGCGGGCGCTCAGCCGGCCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
20062587 TGGGATACGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGC--T-G---C--C-G-T--AAC
196 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
* ** * *
20062640 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGA
261 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA-GA
* * * *
20062705 GCGGACGGGCGGGCAGGCACTACGCCGACTAGAGAGACGTGATGCGCAAGCCTTGGATCGATAGG
324 -C-GA---GC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
20062770 GTGGTCA-GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCCTTTTTATGGCCTGTA
380 GTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * *
20062834 AATTCATACAACGGTCCCTTAAGCCATCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATT
444 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** *
20062899 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
509 TTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * **
20062964 CCCCAAAC-T--TAGACATAATCCTTGTATTTTTGTTGGTATGCGCAAAAAAATTCATTTAAAAA
574 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
20063026 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
639 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
20063091 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGAT
704 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
20063156 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACACCC
769 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
20063221 CCTGGCCCCCTGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGATGA
834 CCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCT-C------G---CGA--A
** **
20063285 TGCTCCGGTGATGGTGCCCCGATGAAGAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATGT
1 -GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
20063350 GCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTAGG
65 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
* * * * * *
20063415 AATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAGCGTGCGGGCGTTCAGCTGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
** * * * * * * * *
20063480 GCGAAATGCGTAAGTCGGGGATCAGCCGGGTCCCCCTTTGTGTGCTATCGATCCTACTG-T-CAT
195 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGC--
* ** * *
20063543 AACCCTCGATCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATTTCTAAGCCAACCGATGAA-
258 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAG
* ** * * *
20063606 ACCAGCGGGCAGGCACTACGCCGGTAAGAGAGATGGGATGCGCAAGCCGTGGATTGATTGGGTGG
323 ACGAGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * **
20063671 TAGGTGGGTTTCGGCATATCTTCATATTTCTGTGTGCCAATG-CATTTTTATGG-TTGTAAATTC
384 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
20063734 ATAGAATCGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
449 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * *
20063799 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
514 CGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * **
20063864 AAC-T--TAGACGTAATCCTTGTATTTTTGTTGGTATGCGCAAAAAAATTAATTTAAAAACTCGA
579 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
20063926 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
644 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
20063991 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGG
709 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
20064056 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
774 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-
* * *
20064121 CCTCGACCCCCC-ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
838 ----G-CCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCT-C-GCGAA
* * * * **
20064175 GCTCCGACGATGGTGCCCCGGTGAAGCAAATTGCGGCACCAGCACATGCCCGAGCCCAGTGTGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
20064240 CTGCAGTAA-CCT---T-C-A---G-TC-----C--GG--T--A--C-G-AT-CTTAGACTGGGA
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * * *
20064279 ATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGGCCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
* * ** ** * * *
20064344 CAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTTTGTGCTACCAATCTTGCTGTTGCAAC
196 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
* * * * *
20064409 CCTTGGTCTAGTCTCATCTTATACTGGGAATGAACTCCGTATGCCTAAACCAACTGACGAAACGA
261 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA-GA
* * *
20064474 GTGGGCGGGCGGGCACTGCGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGG
324 -----CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
20064539 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTGATGGCTTGTAAATTC
384 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
20064604 ATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCA
449 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
20064669 CGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGTCCCCA
514 CGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * *
20064734 AACTTGG-GGGCGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAGATTCAGCTAAAAACTCA
579 AACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
20064798 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
643 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
20064863 GGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTT-TCCAAGGTTTGATGAA
708 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAG
* *
20064927 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCT
772 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
20064992 GGCCCCCTCCGATCG-TCGAAACCCCAATGCCACCGGTCAAGTTCTCCGACGAT
837 GG-CCCC-CCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCT-CG-CGAA
* * * ** * * *
20065045 GCTCCGGCAATGGTGCCCTGACAAAGAAAAATACGGCACCGGAACATGCTCGAGCCCAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * ** * *
20065110 CGGCCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGA
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * *
20065175 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCACTCAACCGGCCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
* * * * * **
20065240 CGGGATGCGCGAGCTGGGGATCGATCGGGTCGCCCTCTACGTGCTGTCGATCCTGCTGCCACAAC
196 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
* * * * * * * *
20065305 CCTC-ATTTCGGTTTAATCTTAGACAGGGAATGAACTCGGAATGCCTAAGCCAACCGACGAAACG
261 CCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA-G
* * * * *
20065369 AGCTGGTGGGCGGGCGGGCAC-GCGCCGACTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAG
323 A---------CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
20065433 GGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAA-GCCATTTTTATGGCTTGTA
379 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
20065497 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
444 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
20065562 TTTCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGA
509 TTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
20065627 ACCCAAACTTGGTAGACGTGATCCTT-TCATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAA
574 CCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
20065691 AATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGG
638 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* ** *
20065756 CTACTGGCGGGGAACCTGTAAAATCTCAAATAG-TCTTTAAGGGGGGGTGAGTTCTCGAGGTTTG
703 CTACTGGCAGCAAACCTGTAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
20065820 ATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACA-
767 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
20065884 CCCCCAGCCCTCCAGATCGTTGGAACCCCAATACCGCCGGTCAGGTTCTC-C--A
832 CCCCCGGCCC-CCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAA
* * * * *
20065936 ------ACGATGGTGCCCCGACGAAGAACAATACGACACCAGCACATGCCTGAGCCCAGCATGCG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
20065995 CTGCCACAACCCTGGGTCC-AGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGG
66 CTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGG
* * * * *
20066058 GAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGACCGTACGGGCGCTCAGCCGGCCAAAGC
129 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* ** * * * * * *
20066123 GGCGGGATGCGCAAACTAGGGATCGATCGTGTTCCCCCTCTGCATGCTGTTGATCCTGCTGCCGT
194 GGCGGGATGCGCAAGCCGGGGATCGGTCG-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGC
* *
20066188 AACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAA
258 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--TG--A
* *
20066253 CGAGCGAGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGAT
318 CGA---A---GACGAGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
20066318 CGATAGGGTGATAGGTGGGTTTAGGCACATCTTAATATTTCTGCATACCAATACCATTTTTATGG
373 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * * *
20066383 CCTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTACATGGCAAGACGACTTGTTT
438 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
20066448 TCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAGACTTTTTTCAGAAGCAG
503 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20066513 TTTT-GCCCCTAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCA
568 TTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCA
* *
20066576 GCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACT
631 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
20066641 TTAATGGCTACTAGCAGCGAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
696 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* ** *
20066706 GGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCACATATGGCACATCATGTGC
761 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
20066771 GCACAACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGTCGCCGGTCAAGTTCTCCGACGAT
826 GCAC-ACCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCT-CG-CGAA
*
20066835 GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
1 GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
20066900 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC-CTATGCTTAGACTGGGA
66 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* * *
20066964 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGACCAGAAGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * * *
20067029 CAGGATGCGTAA-CCCGGGATCGATCGGGTCACCCCTCTACGTGCTGCCAATCCTGTTGCTACAA
196 CGGGATGCGCAAGCCGGGGATCGGTCGGGTC-CCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAA
* ** * *
20067093 CCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAATA
260 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG--A-A
* * * *
20067158 AACGGATGGGCGGGCACTACGCCGGCCAGTGAGACGGGATGCACAAGCTGTGGATCGATAGGGTG
322 GAC-GA---GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *** * * *
20067223 GTAGGTGGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGCTATTTTTATTGCTTGAAAATT
383 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
20067288 CGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
448 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** *
20067353 ACGATTTTCAAATA-TTTTTAAGGTTCTGGATTTTTTAAAATTTTTTTTGAAGGAGTTTCGGCCC
513 ACGATTTTCAAA-ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
20067417 CAAACTTGGT-GCACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAGCTAAAAACT
577 CAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * * * * *
20067481 CAAAGTGTACAAGATTTCGTGATCGTTTTAAAAAAGTGTCCCCATTTCATACACTTTAAGGGCTA
641 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
20067546 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
706 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20067611 GGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
771 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
20067653 ACACCCGAGC
Statistics
Matches: 6901, Mismatches: 812, Indels: 529
0.84 0.10 0.06
Matches are distributed among these distances:
863 137 0.02
864 30 0.00
865 4 0.00
866 1 0.00
867 1 0.00
868 91 0.01
869 13 0.00
870 226 0.03
871 4 0.00
872 19 0.00
873 218 0.03
874 2 0.00
876 1 0.00
879 3 0.00
880 3 0.00
883 36 0.01
884 8 0.00
885 200 0.03
886 297 0.04
887 5 0.00
888 151 0.02
889 613 0.09
890 60 0.01
891 98 0.01
892 361 0.05
893 273 0.04
894 242 0.04
895 806 0.12
896 234 0.03
897 100 0.01
898 371 0.05
899 99 0.01
900 159 0.02
901 412 0.06
902 44 0.01
903 104 0.02
904 317 0.05
905 249 0.04
906 76 0.01
907 28 0.00
908 58 0.01
909 122 0.02
910 42 0.01
911 29 0.00
912 93 0.01
913 190 0.03
914 38 0.01
915 47 0.01
916 141 0.02
917 31 0.00
919 1 0.00
921 1 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
GCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAGACG
AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAA
Found at i:20061608 original size:26 final size:26
Alignment explanation
Indices: 20061569--20061618 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20061559 CGATCCGATC
* *
20061569 TTAGACTGGGAATGAACTTGGTATGA
1 TTAGACTGGCAATGAACTTCGTATGA
20061595 TTAGACTGGCAATGAACTTCGTAT
1 TTAGACTGGCAATGAACTTCGTAT
20061619 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTTCGTATGA
Found at i:20061809 original size:4 final size:4
Alignment explanation
Indices: 20061800--20061833 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
20061790 GACGAAACGA
* *
20061800 GCGG GCGG GCGG GCGG GCGG GCGG ACAG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
20061834 ACTACGTCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.06, C:0.26, G:0.68, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:20062520 original size:26 final size:26
Alignment explanation
Indices: 20062484--20062536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20062474 CCGATTCGAT
* *
20062484 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
20062510 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
20062536 C
1 C
20062537 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:20063285 original size:11 final size:11
Alignment explanation
Indices: 20063265--20063297 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20063255 CGGTCAGGTT
20063265 CTCCGGTGATG
1 CTCCGGTGATG
*
20063276 CTCCGATGATG
1 CTCCGGTGATG
20063287 CTCCGGTGATG
1 CTCCGGTGATG
20063298 GTGCCCCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:20066058 original size:26 final size:26
Alignment explanation
Indices: 20066022--20066074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20066012 CCAGTCCGAT
*
20066022 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20066048 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20066074 C
1 C
20066075 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20066961 original size:25 final size:26
Alignment explanation
Indices: 20066927--20066978 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20066917 CCGGTCCGAT
20066927 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
20066952 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20066978 C
1 C
20066979 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20068395 original size:755 final size:748
Alignment explanation
Indices: 20066952--20068407 Score: 2143
Period size: 755 Copynumber: 1.9 Consensus size: 748
20066942 AACTCCTATG
* * * **
20066952 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAACGTACGCGCACTCAGC
*
20067017 CGACCAGAAGGGCAGGATGCGTAACCCGGGATCGATCGGGTCACCCCTCTACGTGCTGCCAATCC
66 CGACCAGAAGGGCAGGATGCGCAACCCGGGATCGATCGGGTCACCCCTCTACGTGCTGCCAATCC
* *
20067082 TGTTGCTACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
* * *
20067147 CCGACGAAATAAACGGATGGGCGGGCACTACGCCGGCCAGTGAGACGGGATGCACAAGCTGTGGA
196 CCGACGAAACAAACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCTGTGGA
* * *
20067212 TCGATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGCTATTTTTATT
261 TCGATAGGGTGGTAGGTAGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGCCATTTTTATG
*
20067277 GCTTGAAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
326 GCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* * * * **
20067342 TTCTATTTTTCACGATTTTCAAATATTTTTAAGGTTCTGGATTTTTTAAAATTTTTTTTGAAGGA
391 TTATATTTTTCACGACTTTCAAATATGTCTAAGGTTCTGGATTTTTTAAAATTTTTTCAGAAGGA
* *
20067407 GTTTCGGCCCCAAACTTGGTGCACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAG
456 GTTTCGGCCCCAAACTTGGTGCACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
20067472 CTAAAAACTCAAAGTGTACAAGATTTCGTGATCGTTTTAAAAAAGTGTCCCCATTTCATACACTT
521 CTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
*
20067537 TAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
586 TAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
*
20067602 GTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACCCGAGCCCAG
651 GTTTGATGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACCCGAGCCCAG
20067667 CATGTGCTACCGCAACCCTCGATCCGGTCCAAT
716 CATGTGCTACCGCAACCCTCGATCCGGTCCAAT
** **
20067700 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGGCCCACGAAAAGAACGTGTGCGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAACGTACGCGCACTCAGC
* * * ** * * *
20067765 CGGCTAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTC-CTCCTCTACGTGCTGCCGATC
66 CGACCAGAAGGGCAGGATGCGCAA-CCCGGGATCGATCGGGTCACCCCTCTACGTGCTGCCAATC
* *
20067829 CTGCTGCCACAACCCTC-AGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCACAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCC
*** * * * *
20067893 AACCGACGTAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCGGGCTAGAGAGACGGGATGCGC
194 AACCGACG-AA--A-CAAAC-GG-A--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCAC
*
20067958 AAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
251 AAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGC
* * * *
20068023 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGATGTTAAGTTTCATGGCAAG
316 CATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
20068088 ACGACTCGTTTTATATTTTTCACGACTTTCAAA-ACTGTCTACGGTTC-GGGTTTTTCTAAAATT
381 ACAACTCGTTTTATATTTTTCACGACTTTCAAATA-TGTCTAAGGTTCTGGATTTTT-TAAAATT
*
20068151 TTTTCAGAAGGAGTTT-TGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCA
444 TTTTCAGAAGGAGTTTCGGCCCCAAACTTGGT-GCACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
20068214 CAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
508 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCC
* *
20068279 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTTAGGGGGT
573 ATTTCAAACACTTTAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
* *
20068344 TTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCCAATATAAAGGCCAAGTACCAGCACCCATC
638 GTGAGTTCTCAAGGTTTGATGAGGGATAGAGGG-CCAATATAAAGGCCAAGTACCAGCACCCATC
20068408 GCACATCATG
Statistics
Matches: 628, Mismatches: 66, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
747 1 0.00
748 159 0.25
749 19 0.03
751 1 0.00
752 1 0.00
753 2 0.00
754 4 0.01
755 227 0.36
756 214 0.34
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (748 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAACGTACGCGCACTCAGC
CGACCAGAAGGGCAGGATGCGCAACCCGGGATCGATCGGGTCACCCCTCTACGTGCTGCCAATCC
TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
CCGACGAAACAAACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCTGTGGA
TCGATAGGGTGGTAGGTAGGTTTAGGCACAGCTTCATATTTCTATGTGCCAATGCCATTTTTATG
GCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
TTATATTTTTCACGACTTTCAAATATGTCTAAGGTTCTGGATTTTTTAAAATTTTTTCAGAAGGA
GTTTCGGCCCCAAACTTGGTGCACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
TAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACCCGAGCCCAG
CATGTGCTACCGCAACCCTCGATCCGGTCCAAT
Found at i:20070373 original size:26 final size:26
Alignment explanation
Indices: 20070337--20070389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20070327 CCGGTCTGAT
* *
20070337 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20070363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20070389 C
1 C
20070390 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20072159 original size:26 final size:26
Alignment explanation
Indices: 20072119--20072171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20072109 CGGACCAGAT
20072119 CTTAAACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
* *
20072145 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
20072171 C
1 C
20072172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:20073922 original size:26 final size:26
Alignment explanation
Indices: 20073886--20073938 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20073876 CTGATCCAAT
20073886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20073912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20073938 C
1 C
20073939 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20075567 original size:902 final size:901
Alignment explanation
Indices: 20071232--20079646 Score: 10391
Period size: 887 Copynumber: 9.4 Consensus size: 901
20071222 TCCGATCTCT
* * *
20071232 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGGGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
20071297 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * *
20071362 GCCACAACACTTTGATC-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--
131 ACCACAAC-C-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGA
* * * *
20071424 CG--ACGA-AA--CAAGCGGGTGTGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
194 CGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * ** **
20071484 TGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGATATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
20071549 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGATT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
20071614 CGTTTTCTATTTTTCACGATTTTTGAAGCCTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGA
389 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
20071679 AGGTGTTTTGGCCCCAAACTTCGTACACGTTATCCTTGTATTTTTGTTGGCATGCATAAAAAAA-
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
20071743 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCGTTCCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
20071808 AATTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* ** *
20071873 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGATCAAGTACCAGCATCCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20071938 TGCGCACACCCCACCCCGGCTCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA
714 TGCGCACA--CC-CCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** * *
20072003 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGACCAGCA
776 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* *
20072068 TGTGCTGCCGCAACCCTCCGTCTGGTCTGATCTTAGAAGATCGGACCAGATCTTAAACTGGAAAT
841 TGTGCTGCCGCAA--C-CC-TC-GGTC----C------GAT----CC-GATCTTAGACTGGGAAT
20072133 GAACTCCGTATGCTTA
886 GAACTCCGTATGCTTA
* * * * *
20072149 AACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * * ** *
20072214 CAGAGGGGCGGGATGCACATGCCGAAGATCGGCCGAGTCCCCTTTTATGTGCTGCCGATCCTGTT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
*
20072279 ACCACAATCCTTGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 ACCACAA-CCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CG
* ** * * * **
20072343 ACTAAACGAGCGGGCGGCGGACGGATGGGCGGGCGGGCACTACGACGGCTAGAGAGACAAGATGC
193 ACGAAACGA---GAAGGC-GA--G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * ** * ***
20072408 ACAAGCCGTCGATCGATAGGGCAGTAGGCGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
251 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20072473 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * * *
20072538 AGACGACTCGTTTTCTATTTTTCAAGATTTTCCAAACTTTTTATGGTTCGGGATTTTCTAGAATT
381 AGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
20072603 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATCTTTGTTGGCATGCAC
446 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
20072668 AAAGAAATTCAGGTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
20072733 TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGTTCTTTTAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
20072798 TGAGTTTTCGAGGTTTGATGAGGCATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
20072863 ACATCATGTGCGCA-ACCCCCCCG-ACCGCCG-TC-TC---A--CCAATGTC-TCGGTCAGGTTC
706 ACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
*
20072918 T-CG-GGATGCTCCG--GATGGTG--CCGACGAAG-AAAATG-GGCACCAGCACA-GCCCGAGCC
771 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* *
20072974 CAGCATGTGCTGCATG--A-CCAC--TCCGAT--GATC--AGACTGGGAATGAACTCCGTATGCT
836 CAGCATGTGCTGC-CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
20073030 TA
900 TA
* *
20073032 G-CT-GGAAT-AAC-CTGT-TGCCTAAGTC-ACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
*
20073090 CAGA--GGCGGGATGCGCAAGCC--GGATC-GTCGGTGT-CCCCT-TGCGTGCTGCC-ATCTTGC
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG-GTCCCCCTCTGCGTGCTGCCGATCCTGC
20073147 TACCA-AA-CTC-GTCTGGTCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAAACGA
130 TACCACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACGA
** * * * *
20073208 CGAAACGAGCGGGCGGGCGGGCGGGTGGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
194 CGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
20073273 TGGATCGATAGGGTGGTAGGTGGGTATAGGTACATCTTGATATTTCTACGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
20073338 TATGGCTTGTAAATTCGTACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGGAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
20073403 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAAGGTTTGGGATTTTTTTAAATTTTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
20073468 AGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTATATTTTTGCTGGCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
20073533 TCAGCTTAAAAGTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
20073598 ACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
20073663 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * **
20073728 TACGCACACCCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTG
714 TGCGCACA-CCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
20073792 ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGGCATCGGCACATGCCCGAGCCCAGTATG
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20073857 TGCTGGCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
843 TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
20073916 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** * * * * * *
20073981 CAGA-GGGCAGGGATACGTAAGCCGAGGATCCATTGGGTCCCCTTTTGCGTGCTACCCATCTTGC
66 CAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
20074045 TACCACAACCATTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
130 TACCACAACC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CG
* ** * * * *
20074110 ACGAACCGAGCGGGCGGGCGGGCGGGCAGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
193 ACGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20074175 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATACCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * *
20074240 TTCTGGCTGGGAAATTCATATAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
20074305 TCGTTTTCTACTTTTCATGATTTTCGAAACTTTTTGA-GGTTCAGGATTTTTTAAAATTTTTTCG
388 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCG
* *** * * * *
20074369 AAAGGA-TTTT---TTAAAACTTGGTAGCCATGATCCTTGTATTTTTGTTGGAATGCATAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
20074430 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAGAAAAGTGTCCCCATTCCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20074495 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTTAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20074560 CTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTACTAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
20074625 TGTGCGCACAGCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
712 TGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* *
20074690 GATGCTCCGACGATGGTGCCCTGACGCAA-AAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
777 GATGCTCCGACGATGGTGCCCCGACG-AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * **
20074754 TGTGCTGCCGTAACCCTCGGTCCGATCTGTTCTTATATTGGGAATGAACTTTGTATGCTTA
841 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
20074815 GACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
20074880 CAGAGGGGCGGGATACGCAAGCCGGGGATCGATCGGGT-CCCTTCTGTGTGCTGCTGATTCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
*
20074944 ACCATAATCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
131 ACCACAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GA
*
20075009 CGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACTGGATGCGCAAGCCG
194 CGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
20075074 TGGATCGATAGGGTGGTAGGTGGGATTAGGCATATCTTTATATTTTTGCATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
20075139 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* **
20075204 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTCTAAAATCCTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
20075269 AGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGTCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
20075334 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
20075399 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
20075464 CGAGGTTTGATAAGGGATAGGGGGCCAACATAAGGGCCAAGTTCCAGCACCCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * **
20075529 TGCGCACACCCTCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
714 TGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* ** * * * *
20075594 TGCTCCGGCGATGGTGCCTGGATGAAGAAAAATATGGCACCAGCAAATGCCTGAGCCCAGCATGT
779 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
** * * *
20075659 GCTGCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATCCTTA
844 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
20075717 GACTGGGAATGAACTCCGTATGCCTATGTTAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
20075782 CAGATGGCCGGGATGCACCAGCCAGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCC-A-----C-
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
20075840 A--AC--CCTCTGTCTGGTCCGATCTTAGACTGCGAATTAACTCCGTATGCCTAAGCCAACAGAT
131 ACCACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GAC
* * * * * * * *
20075901 GGAAC--G-AGCCG-GCGGGCGGGCGAGCACTATGCCGGCCATAGAAATGGGATGGGCAAGCCGT
195 GAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
20075962 AGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
20076027 ATGGCTGGGAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** *
20076092 GTTTTCTACTTTTCACGATTTTCGAAACTTTTTGA-GGTTCGGGA-TTTTTAAAATTTTTTTGGA
390 GTTTTCTATTTTTCATGATTTTTAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
20076155 AGGAGTTTTGGCCCCAAACTTGGTAG-CTGTGATCCTTGTATTTTTTTTGGAATGCACAAAAATA
454 AGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20076219 TTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
20076284 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGTTTTTTTTAGGGGGTGTGAGTT
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTT
* * *
20076349 CTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
20076414 TGTCCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGCCGGTTAGGTTCTCCGAC
712 TGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
20076479 GATGCTCCGATGATGGTGCCTCGACGCAGGAAAATGTGGCACCAGCACATGCTCGAGCCCAGCAT
777 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
20076544 GTGCTGCCGCAACCCT---T--G----G-TC-----C--GG--T---CT--GT-T-CTTA
842 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
20076578 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *
20076643 CAGAAGGGCGGGATGCAG-AAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCCAGC
66 CAGAGGGGCGGGATGC-GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* *
20076706 TACCATAATCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
130 TACCACAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-G
* **
20076771 ACGAAACAAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
193 ACGAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20076836 GTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTTATATTCCTGCATGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
20076901 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * **
20076966 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCGAGATTTTCTAAAATCCTTTCGG
388 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * *
20077031 AAAGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20077096 TTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
20077161 CACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAATGGAGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
20077226 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * ** **
20077291 GTGCGCATACCCCCCAGCCCCCCCAATCGTCGAAAGCCCAATGCCACCGGTCAGGTTCTCCGGTG
713 GTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* ** * * *
20077356 ATGCTCCAACGATGGTGCCTGGACGAAGAAAAATATGGCACCAGAACATGCCTGAGCCCAGCATG
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20077421 TGCTGCCGTAACCCTCGGTCATG-TCCGATCTTAGACTGGGAATGAACTCTGTATCCTTA
843 TGCTGCCGCAACCCTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
20077480 GACTGGGAATAAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * * *
20077545 TAGATGGGCGGGATGCACCAGGCAGGGATCGGCCGAGTCCCCCTTTGCATGCT---G--CC-G-T
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * *
20077603 A--AC--CCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACAGAT
131 ACCACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GAC
* * * * * * *
20077664 GGAAC--G-A-GCGGGCGGGCGGGCGGGTACTATGCCGACCATAGAGATGGGATGCGCAAGCCGT
195 GAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * ***
20077725 AGATCGATAAGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * * *
20077790 ATGGGTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTT-AGTGGCAAGACAACT
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACT
* * * ** *
20077854 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCTGGATTTTTTAAAATTTTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * **
20077919 AGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAATGT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * * *
20077984 TCAGCTAAAAACTCAAATTGTACAAGATTTTGTGGCCATTAGAAAAAAGTCTCCCCATTTCAGAT
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
20078049 AATTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
20078114 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20078179 TGTGCACACCCCCCCGACCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTACG
714 TGCGCACACCCCCCAG-CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *
20078244 ATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACAAGCCCGAGCCCAGCATG
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20078309 TGCTACCGTAACCCTCGGTCC-AGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
843 TGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
20078368 GACTGGGAATGAACTCCGTATGACTACGCCAACCCTCGAAATGAGCGTGCGGGCTCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** * *
20078433 TAAAAGGACGGGATGCGTAAGCCGAAGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
20078498 GCCACAACCTTTGGTCTAGCCTGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGA
131 ACCACAACC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGA
* * * * *
20078563 CGAAACGAG-CGGACGGGC-GGCGGGCGGGCACTACTCCGGCTAGAGAGACAGGATGCGCAAGCC
194 CGAAACGAGAAGG-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
20078626 GTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATCCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
20078691 TTTTGGCTTGTAAATTCATACAATGGT-CCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
20078755 TCGTTTTCTATTTTTCATGATTTTTTAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
388 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* ** *
20078820 AAGGAATTTTGTTCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
20078885 TTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCAATTTTAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20078950 CACTTTAATGGCAACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
20079014 TCGAGGTTTGATGAGGGATAGGAGGCCAATATATGGGCCAAGTACCAGCACCCACCACACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * ** ** * *
20079079 GTACGCGTAGGCCCCTCCAGGCCCCCCCGATTGTTGGAACCCCAATGCCGTCGGTTTGATTCTTC
713 GT--GCGCACACCCC-CCA-GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * ** ** * * *
20079144 GGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGTCAAG
774 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20079209 CATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGCATGATTA
839 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** * * **
20079272 GACTGGGAATGAATTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAAACGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* ** *
20079337 CAGAGGGGCGGGATGCGCAAACCGGGGATCGGTCAAGTCTCCCTCTGCGTGCTGCCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * *
20079402 GCCGCCACCCTTGGTCCGG-CCGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--C
131 ACC-ACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGAC
* * *
20079464 G--ACGA-AA--CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATACGCAAGCCGT
195 GAAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * * ****
20079524 GAATCGATAGGGTCGTGGGTGGGTTTAGGCATATCTTCATATTTCTACATATTTATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
20079589 ATGGCTTGCAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAG
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
20079647 NNNNNNNNNN
Statistics
Matches: 6502, Mismatches: 829, Indels: 354
0.85 0.11 0.05
Matches are distributed among these distances:
857 461 0.07
858 2 0.00
859 12 0.00
860 19 0.00
861 101 0.02
862 1 0.00
863 1 0.00
864 25 0.00
865 33 0.01
866 11 0.00
867 14 0.00
868 5 0.00
869 20 0.00
870 11 0.00
871 14 0.00
872 63 0.01
873 8 0.00
874 22 0.00
875 14 0.00
876 428 0.07
877 204 0.03
878 15 0.00
879 5 0.00
880 8 0.00
881 5 0.00
882 7 0.00
883 25 0.00
884 29 0.00
885 8 0.00
886 184 0.03
887 873 0.13
888 246 0.04
889 12 0.00
890 26 0.00
891 122 0.02
892 6 0.00
893 16 0.00
894 3 0.00
895 13 0.00
896 128 0.02
897 46 0.01
898 340 0.05
899 479 0.07
900 60 0.01
901 79 0.01
902 853 0.13
903 446 0.07
904 264 0.04
905 6 0.00
906 2 0.00
910 1 0.00
911 20 0.00
912 13 0.00
913 5 0.00
914 9 0.00
916 11 0.00
917 161 0.02
918 11 0.00
919 2 0.00
920 14 0.00
921 7 0.00
922 4 0.00
923 1 0.00
927 2 0.00
928 6 0.00
929 6 0.00
930 2 0.00
931 1 0.00
932 270 0.04
933 181 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
ACCACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACG
AAACGAGAAGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:20077486 original size:26 final size:26
Alignment explanation
Indices: 20077450--20077505 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20077440 CATGTCCGAT
* *
20077450 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATAAACTCCGTATC
*
20077476 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATC
20077502 CTTA
1 CTTA
20077506 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATC
Found at i:20078367 original size:26 final size:26
Alignment explanation
Indices: 20078338--20078389 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20078328 CCAGTTCGAT
*
20078338 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20078364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20078390 ACTACGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20082191 original size:26 final size:26
Alignment explanation
Indices: 20082155--20082207 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20082145 TCAGTCTGAT
20082155 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20082181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20082207 C
1 C
20082208 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20082410 original size:904 final size:901
Alignment explanation
Indices: 20080653--20093369 Score: 16505
Period size: 904 Copynumber: 14.2 Consensus size: 901
20080643 NNNNGTGGTA
*
20080653 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT-CCATTTTTTTGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
20080717 TCATACAATGGT-CCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
20080781 CATGATTTTCAAAACTTTTTGCGATTCAT-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
131 CATGATTTTCGAAACTTTTTGCGGTTC-TGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * * * *
20080845 CCAAACTTGGTAAATGTGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCATCCAAAAAAT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
20080910 CGAAGTGCACAAGATTTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
260 CGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
20080975 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
324 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
20081040 ATAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC
389 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * **
20081105 CCCGACCCCCCCGATCGTCGGAACCCTAATGTCATCGGTCAGGTTCTCCGACGATGCTCCGATGA
453 CCCG-GCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGA
* ** * * *
20081170 TGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGCGCTGCCGCAAC
517 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * * * *
20081235 CCT-TGATCTGATCCAATTTTAGA-TCGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTC
582 CCTCGGTTC-GGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
20081298 CGTATGCCTAAGTCAACCCATGAAACTG-GCGTGCGGGCGCTCAGCCGGCCAAAGTGGCGGGATA
645 CGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* **
20081362 CGCAAGCCGGGAATCGGTCGGGTCCCCTTCTGCGTGCTGTTGATCCTGCTACCGCAACCCTCAGT
709 CGCAAGCCGGG-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGT
* * *
20081427 CCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAATCGACGAAACGAGCGAGCG
773 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCG
* ** * * *
20081492 GGCGGGTAGGCGGGCACTATGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGCGT
838 AGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
20081556 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
**
20081621 TCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
20081686 CATGATTTTTGAAACTTTTTGTGGTACTGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
20081751 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
20081816 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCAATTTCAGACACTTTATTGGCTAC
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
20081881 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTGACGAG
326 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
20081946 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
391 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * ** **
20082011 GGCCCCTCCGATCGTCGGAACCCCACTGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAAAATTA
456 GGCCCC-CCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGG
* *
20082076 TGCCCCGACGAAGAAAAATGCGGCATCAGTACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
520 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
20082141 CGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
585 CGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * ** *
20082206 GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGTCAGAAGCAGCGGGATGCGTAA
650 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAA
* * * * * *
20082271 GCCAGGGATCGGTCGGTTCCCCCTCTGCATGCTACCGATCCTGGTATCACAACCCTCAGTCCGGT
714 GCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
*
20082336 CGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCGG
778 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCGG
* * * *
20082401 GCGGGCGGGCACCACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCAATAGGGT
843 GCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
** *
20082460 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGTCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
20082525 GCATACAATGGTCCCTTAAGCCGTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * * * * *
20082590 CACGGTTTTCAAAACTTTGTGCAGTTCAGGATTTTTTTAAATTTTTTCGGGACGAGTTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
20082655 CAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATCCATAAAAAAATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
20082720 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAAAACACTTTAATGGCT
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC--AGACACTTTAATGGCT
20082785 ACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
324 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
20082849 ATAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC
389 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * **
20082914 CCCGACCCCCCCGATCGTCGGAACCCTAATGTCATCGGTCAGGTTCTCCGACGATGCTCCGATGA
453 CCCG-GCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGA
* ** * * *
20082979 TGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGCGCTGCCGCAAC
517 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * * * *
20083044 CCT-TGATCTGATCCAATTTTAGA-TCGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTC
582 CCTCGGTTC-GGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
20083107 CGTATGCCTAAGTCAACCCATGAAACTG-GCGTGCGGGCGCTCAGCCGGCCAAAGTGGCGGGATG
645 CGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
**
20083171 CGCAAGCCGGGAATCGGTCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCGCAACCCTCAGT
709 CGCAAGCCGGG-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGT
* * * *
20083236 CCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCG
773 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCG
* * *
20083301 GGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGT
838 AGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
20083365 GGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
20083430 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
20083495 CATGATTTTCAAAACTTTTTGCGATTCAT-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
131 CATGATTTTCGAAACTTTTTGCGGTTC-TGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
20083559 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA-CCAAAAAAT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
20083623 CGAAGTGCACAAGATTTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
260 CGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
20083688 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTCATG
324 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
20083753 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCC
389 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
20083818 CCGGCCCCCCGATCGTCGAAACCCTAATGCTGTCGGTCAGGTTCT-C--C---G--CC---GA--
454 CCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATG
* * *
20083870 -TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCC
519 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * * *
20083934 TCGATCCTGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACACCGTA
584 TCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
20083999 TGCCTAAGTCAACCCGCGAAACGAGTGTGCGGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAA
649 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * ** * * *
20084064 GCCGAGGATCGGTCAGGTCCCGCTCTACGTGCTGCCTATCCTGTTGGCACAACCCTCACTTCGGT
714 GCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGT
* * * * *
20084129 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATG--A--AATGAGCGGGCAG
778 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCGG
* * *
20084190 GCGGGCGGGCACTAC-ATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGAGT
843 GCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
20084249 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20084314 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
20084379 CATGATTTTCAAAACTTTTTGCAGTTC-GAGATTTTTTAAAATTTTTTCTGAACGAGTTTTCGCA
131 CATGATTTTCGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
20084443 TCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCAAAAAACT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
20084508 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
260 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* **
20084573 CTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGA
325 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
20084638 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGCGCACACCCCC
390 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * ** *
20084701 CGGCCACCCCTATC-TCTAGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
455 CGGCC-CCCCGATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGAT
* * *
20084765 GGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA--
518 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
20084828 C-C----C--TCC-ATC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCAT
583 CTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * *
20084869 ATGCCTAAGTCAACTCACGAAACGAGCGTGCAGGTGCTCAACCGGTCGGAGGGGCGGGATGGGCA
648 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * * * *
20084934 AGTCGGGGATCGACCGGGTCCCCCTCTGAGTGTTGTCGATCCTGCTGCCACAACCCTCAGTCTGG
713 AG-CCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGG
* * *
20084999 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCA
777 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCG
* ** * ** * *
20085060 GACGGGCGGGCACTACGCCAGCTAGAGAGATTGGATACGCAAGCCATGGATCGATAGGGT
842 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
20085120 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
20085185 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
20085250 CATGATTTTCAAAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCC
131 CATGATTTTCGAAACTTTTTGCGGTTCT-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
20085314 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20085379 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTA
260 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
20085444 ATGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGA
325 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
20085509 GGGATAGGGGCCCAATATACGGGCCAAGTACCAGCACCCATCGCCCATCATGTGCGCATACCCCC
390 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** * * *
20085574 TCGACCCCCCGATCACCGAAATCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATG
455 -CGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATG
** * * *
20085639 GTGCCCCGGTGAAGGAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ACGACAACC
519 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACC
*
20085703 CTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCG
583 CTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
20085766 TATACCTAAGTCAACCTAAGAAATGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGC
647 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * * *
20085831 AAGCCAGGGATTGGTCGGGTCCTCATCTACGTGCTGCCGATCTTGCTACGGCTACCCTCGGTCCG
712 AAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCG
** *
20085896 GT-TCGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAA-C--CG--ATGAA--AG-GAG
776 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAG
*** * * *
20085952 CGGGCGAAAGAGCACCACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT
840 CGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
20086014 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
20086079 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * * *
20086144 CACAATTTTTGAAACCTTTTACGG-TCCGAGATTTTTTTAAAACATTTTT-GGAAGGAGTTTTGG
131 CATGATTTTCGAAACTTTTTGCGGTTCTG-GA-TTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGG
* * *
20086207 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAA
193 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
** * *
20086272 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTCCAAACACTTTAATGGC
258 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
20086337 TACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGGTTTGA
323 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGA
* *
20086401 TGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
387 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** ** **
20086466 CCCCGGCCCCCTCGATCGTCGAAAACCCAATGCAACCGGTCAGGTTCTCCGGTGATGCTCCGGCG
452 CCCCGGCCCCC-CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATG
* * * * * *
20086531 ATGGTGACCCGATGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCATG-ATTTGCTGTCGCA
516 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-GCATGTGCTGCCGCA
* * * * * *
20086595 ACCCTCGGTCCAGACCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTT
580 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
20086660 CGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCAGAGGGGCGGGATTC
645 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * * * * * *
20086725 GCAAGAAGGGGATTGGTCGGGTCCCTCTCTGCCTGCTGCCAATCCTGGTGCTGCAACCCTC-GAT
710 GCAAG-CCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-T
* * * * ** * * * *
20086789 CTGGTCTGATCTTGGACTGGGAATGAGCTCTGTATGCCTAAGTGAACTGATGAAACGAGCGGGCG
773 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCG
* * ** * * * *
20086854 GGTGGATGGGTGAGCACTACGCTGGCAAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGT
838 AGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
20086918 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
20086983 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCATGATGACTCGTTTTTTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * **
20087048 CATGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTC-GAAAAAGTTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
20087112 AAAACTTGGTAGACGTGATCATTTTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
20087177 GAAGTGTACAAGATTTTATGAGCATTTG-AAAAAGTGTCCCCATTTCAGATACTTTAATAGCTAC
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
20087241 TGGCAGCAAACTTGTAAAATATTAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
326 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
20087306 GGATAGAGGGCCAATATAAGGGCCAAATACCAGCACACATCGCACATCATGTGCGCACACCCCCC
391 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCC
* * **
20087371 TCCCGGCCCCCCTATCG-CCAGAACCCCAATGCCGCTAGTCAGGTTCT-C--CGA-----C---G
453 -CCCGGCCCCCCGATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATG
* *
20087424 ATGGTGCCCCGACGAAGAAAAAGGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCTGCCGCAA
516 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
20087489 CCCACGG-TCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
581 CCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
20087553 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGTGGGATGC
645 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
20087618 ACAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAAT-CTAGTTGCCGCAACCGTCAGT
710 GCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTACCGCAACCCTCAGT
* * * * * *
20087682 CCGGTCTGATCTTAGACTAGGAATAAACTTCGTATGCCTAAGCCAACCGACGAAACGACCGGGAG
773 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCG
* * * *
20087747 GGCAGACGTGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
838 AGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
20087811 GGTAGGTGGGTTTAGGCACATTTTCATATTTCAACATGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
20087876 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
20087941 CATAATTTTTGAAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTC
131 CATGATTTTCGAAACTTTTTGCGGTTCT-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
20088005 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
20088070 TGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
260 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
20088135 CTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGA
325 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* ** *
20088200 GAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCACC
390 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CC
* *
20088265 CTCCGGCCTGCCCGATCGTCGAAACCCCAATGCCGCCGGTCA---------A-G-TTCTCCGATG
453 C-CCGGCC-CCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATG
* * *
20088319 ATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAA
516 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
20088384 CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC
581 CCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
20088449 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGAGATGCG
646 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** * * * * * *
20088514 GAAGCCGGGGATCAATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCGGTTC
711 CAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCC
* *
20088579 GGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAATCGACGAAACGAAC-A--G-
775 GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGA
*
20088639 GCGGGCGGGTGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
839 GCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
20088702 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCGGAAAGCAATTTTTATGGCTTGTAAA
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC-CAATGCCATTTTTATGGCTTGTAAA
* * ** *
20088767 TTCATACAATGGTCCCTTAAGCCTTCACGTCAATTTTCATTACAAGACGACTCATTTTCTATTTT
65 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
20088832 TCATGATTTACGAAAGTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTTGGAAGGAGAATTGGC
130 TCATGATTTTCGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * * *
20088896 CCCAAACTTGGTAGACGTAATCCCTGTATTTTTTTTGACATGCA-AAAAAAATTCAGCCATAAAC
194 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
20088960 TCGAAGTCTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCT
259 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
20089025 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATA
324 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
20089090 AGTAATAGGGGGCCAATACAAGGGCCAAGTACCAG-A---A---C-C--CATGTGCGCACACCCC
389 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * *
20089145 TCCCGGCCCCCCGATCG-CTGAAACACCAAAGCCGCCGGTCAGGTTCTCCGACAATGCTCCGATG
453 -CCCGGCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATG
** * * * * * * **
20089209 ATGGTGCCCCGGTGACGAAAAATACGGCACTAGGACATGCCCGAGCCCAGCAAGTGCTGTCATAA
516 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
20089274 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCC
581 CCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * * * *
20089339 GTATGCCTAAGTCAATGCACAAAATGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGTGGGATGCG
646 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * *
20089404 CAAGCCGGGATCGGTAGGGTCCCCCTCTGTGTGCTCCCGATCCTACTACCACAACCCTCAATCTG
711 CAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCG
* * * *
20089469 GTCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCGAA---TCG--ACGAA--A-CGA--
776 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGC
* * * *
20089524 --GCGGACGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT
841 GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
20089583 GGTAGGTGGGTTTAGGCAAATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAATT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20089648 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGCCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
20089713 CACGATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAAATTTTTAC-GAAGGATTTTTGGCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCC
* ** *
20089777 CCAAACATGGTAGGTGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
195 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20089842 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTA
260 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
20089907 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGA
325 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
20089971 GGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCCTCGCACATCATGTGCG--CACCCCT
390 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * **
20090034 CGACCCCCCGATCGCCGGAAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
455 CGGCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATG
* * * *
20090098 GTGCCCCTG-CAAAGAAAAATGCGGCACCAGTACATGCCCGAGCCCAACATGTGCTGCTGCAACC
519 GTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
20090162 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
583 CTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
20090227 ATGCCTAAGTCAA-CCACGAAACAAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGTGCA
648 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * *
20090291 AGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCATGCTGCTGCAACCCTCAGTCTGG
713 AGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGG
* *
20090356 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG--A--AACGA---A-CG
777 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCG
* * * * * *
20090413 GTCGGGTGGGCACTATGCCGGCCAGTGAGACGGGATGTGCAAGCCGTGGATCGATAGGGT
842 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
20090473 GGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
** * *
20090538 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTGTGGCAAGACGACTTGTTTTTTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
20090603 CATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
20090668 CAAACTTAGTAGACATGATCCTTGCATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
20090733 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
20090798 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
326 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
20090863 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGTG--CA------
391 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
** * * ** * *
20090920 --CCCCCCGATCACCGAAACCCTAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGTGATAGT
456 GGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGT
* * *
20090983 GCCCCGACGAAGAAAAATGCGGCACCAGCACATCCCCAAGCCCAGCATGTGCTGCCGCAATCCTC
521 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* ** * * * *
20091048 GGTCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAGG
586 GGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
20091113 CCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAGGC
651 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** * * * * *
20091178 CGCGGATCCGTTGGGTCACCCTCTGTATGCTGCTGATCCTGCAACCGCAACCCTCATTCTGGTCC
716 CG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCT
* * * * *
20091243 AATCTTAGACTGGGAATGAACTCTGTATGGCTAAGCCAACCGACGAAAC-AAGCGGGCG-GACGA
780 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CGAGCGAG-CGG
* *
20091306 GCGGGCAGGCATTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
843 GCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
20091365 GGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
20091430 TCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * *
20091495 CATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATATTTTCGAAAGGATTTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
20091560 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
20091625 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTAC
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
20091690 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGGTGTGAGTTCTCGAGGTTTGATGA
326 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTCTCGAGGTTTGATGA
*
20091755 GGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCC
390 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
20091818 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGTTGATG
455 CGG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATG
* * *
20091883 GTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCC
519 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
20091948 TCGG-TCTGGTCCAATCTTAGACTGTGAATGAACTGCATATGCTTAGACTGGGAATGAACTCCAT
584 TCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
20092012 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGGCAGAGGGGCGGGATGCGCA
648 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * ** * * *
20092077 AGCCGCGGATCGGCCGGGT-CCCCTTTGCGTGCTGCCGATCTTGCTGTCACAACCCTCGGTCTGG
713 AGCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGG
* * * *
20092141 TCTGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-GTC-AGG
777 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAG-CGA-G
* * *
20092204 CGTGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGT
840 CGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** *
20092266 GGTAGGTGGGTTTAGGCACATCTTTATATTTCTATATGCCAATGTCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
20092331 TCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTTGTTTTTTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * **
20092396 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-CCTTTGGCCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * * * *
20092460 CAAACTTAGTAGACATGATCTTTGCATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTC
196 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
20092525 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTAC
261 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
20092590 TAGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
326 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
20092655 AGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCC
391 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
20092718 GGCCCCCCCGATCGTCGAAACCCCAATGCCACCGATCAGGTTCTCCGGCGATGCTCCGTTAATGG
456 GG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGG
* * ***
20092783 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATTGCAACCCT
520 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
20092848 CAG-TCTGGTCTGATCTTAGACTGTGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATA
585 CGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
20092912 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGAGATGCACAA
649 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * * * *
20092976 GCCGCGATCCGCCGGGTCCCCTTTTACGTGCTGCCGATCCTGTTGCCGCAACCCTC-GATCTGAT
714 GCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCCGGT
* * * *
20093040 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACTGA--TAA--AAC-A---AGCGG
778 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCGG
* * *
20093097 GCGGGTGGGCACTACG-TCGGCCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGGT
843 GCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
**
20093156 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
20093221 TCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** *
20093286 CATGATTTTTGAAACTTTTTGAAGTTC-GGAACTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
131 CATGATTTTCGAAACTTTTTGCGGTTCTGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
20093350 CCAAACTTGGTAGACGTGAT
195 CCAAACTTGGTAGACGTGAT
20093370 TTTGTGACCA
Statistics
Matches: 10394, Mismatches: 1199, Indels: 454
0.86 0.10 0.04
Matches are distributed among these distances:
871 632 0.06
872 6 0.00
873 115 0.01
874 6 0.00
875 1 0.00
876 2 0.00
878 1 0.00
879 30 0.00
880 223 0.02
881 233 0.02
882 29 0.00
883 212 0.02
884 595 0.06
885 64 0.01
886 268 0.03
887 20 0.00
888 265 0.03
889 103 0.01
890 790 0.08
891 376 0.04
892 571 0.05
893 571 0.05
894 319 0.03
895 857 0.08
896 169 0.02
897 78 0.01
898 251 0.02
899 313 0.03
900 168 0.02
901 452 0.04
902 394 0.04
903 299 0.03
904 1010 0.10
905 732 0.07
906 234 0.02
907 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CATGATTTTCGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAGCGAGCGGGCG
GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
Found at i:20083985 original size:26 final size:26
Alignment explanation
Indices: 20083949--20084001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20083939 CCTGTCCAAT
**
20083949 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
20083975 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
20084001 C
1 C
20084002 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:20085762 original size:25 final size:26
Alignment explanation
Indices: 20085719--20085768 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
20085709 CTGGTCCGAT
20085719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20085745 CTTAGACT-GGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20085769 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20087536 original size:26 final size:26
Alignment explanation
Indices: 20087507--20087559 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20087497 CAGGTCCGAT
20087507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20087533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20087559 C
1 C
20087560 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20088431 original size:26 final size:26
Alignment explanation
Indices: 20088402--20088454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20088392 CCGATCCGAT
20088402 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20088428 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20088454 C
1 C
20088455 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20089321 original size:26 final size:26
Alignment explanation
Indices: 20089292--20089344 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20089282 CCGGTCTGAT
20089292 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20089318 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20089344 C
1 C
20089345 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20090207 original size:26 final size:26
Alignment explanation
Indices: 20090178--20090230 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20090168 CCGGTCTGAT
20090178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20090204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20090230 C
1 C
20090231 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20091090 original size:26 final size:26
Alignment explanation
Indices: 20091061--20091110 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20091051 CCAATCCAAT
20091061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20091087 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
20091111 GGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20092002 original size:26 final size:26
Alignment explanation
Indices: 20091963--20092015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20091953 CTGGTCCAAT
* *
20091963 CTTAGACTGTGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20091989 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20092015 C
1 C
20092016 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20092901 original size:26 final size:26
Alignment explanation
Indices: 20092862--20092914 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20092852 CTGGTCTGAT
*
20092862 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20092888 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20092914 C
1 C
20092915 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20093731 original size:26 final size:26
Alignment explanation
Indices: 20093695--20093747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20093685 CCAGTCTGAT
20093695 CTTAGACTGGGAACGAACTCCGCATG
1 CTTAGACTGGGAACGAACTCCGCATG
* *
20093721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGCATG
20093747 C
1 C
20093748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGCATG
Found at i:20094618 original size:26 final size:26
Alignment explanation
Indices: 20094589--20094639 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20094579 CCGATCCGAC
*
20094589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
20094615 CTTAGACTGGGAATCAACTCCGTAT
1 CTTAGACTGGGAATCAACTCCGTAT
20094640 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:20095513 original size:26 final size:26
Alignment explanation
Indices: 20095477--20095529 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20095467 CTGGTCTGAT
20095477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20095503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20095529 C
1 C
20095530 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20096378 original size:26 final size:26
Alignment explanation
Indices: 20096343--20096393 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20096333 TGGTCTGATC
*
20096343 TTAGATTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
20096369 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
20096394 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:20097268 original size:26 final size:26
Alignment explanation
Indices: 20097232--20097310 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20097222 CTGGTCTGAT
20097232 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20097258 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20097284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20097310 C
1 C
20097311 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20100626 original size:26 final size:26
Alignment explanation
Indices: 20100588--20100640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20100578 CCAGTTCGAT
20100588 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
20100614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
20100640 C
1 C
20100641 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:20101457 original size:26 final size:26
Alignment explanation
Indices: 20101407--20101458 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20101397 TGGTCCGATA
* *
20101407 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
20101433 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
20101459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20101784 original size:818 final size:808
Alignment explanation
Indices: 20100207--20101830 Score: 2155
Period size: 818 Copynumber: 2.0 Consensus size: 808
20100197 CTTGGTAGAC
* * *
20100207 GTGATCATTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGATGTCTACAAGAT
1 GTGATCATTGCATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCTACAAGAT
* * *
20100272 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACTTG
66 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTAGCAGCAAACCTG
*
20100337 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAA
131 TAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAA
** * **
20100402 TGTAAGGGCCAAGTACCAGCACCCATCACACATCATGTATGCACACCCTTTCCGGCCCCCCCGAT
196 TAAAAGGGCCAAG-ACCAGCACCCATCACACATCATGTACGCACACCCCCTCCGGCCCCCCCGAT
* * ** *
20100467 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGGTGCCCCGGTGAAGAAAAATGCGG
260 CATCGGAACCCCAATGCCACCGGTCAGGTTCTCTGATGATGGTGACCCGACGAAGAAAAATGCGA
* * * * * *
20100532 CACCAGCACATGCCCGAGCCTAGCATGTCCAACCGCAACCCTCTGTCCAGTTCGATCTTAAACTA
325 CACCAGCAAATGCCCGAGCCCAGCATGTCCAACCACAACCCTCGGTCCAGTCCGATATTAAACTA
* *
20100597 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
390 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
* * * * * *
20100662 GCGTGCAGGCACTCAGCCGGCCAAAGGGGTGGGATGCGCAATCTGGGGATCGGTCGGGTCTACCT
455 GCGTGCAGGCACTCAGCCAGCCAAAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCTACCT
* * *** * **
20100727 CTGCGTGCTGCCGATCCTGCTGTTGCAAACCTTGATCCGATCTGATCTTAGACTGGGAATGAACT
520 CTACGTGCTGCCGATCCTACTACCGCAAACCTAGATCCGATCCAATCTTAGACTGGGAATGAACT
*** * *
20100792 TTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCAGACGGGCGGGTACTATGCCGGTCAG
585 CCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCAGACGGGCGGGCACTACGCCGGTCAG
*
20100857 AGAGACGAGATACGCCAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
650 AGAGACGAGATACGCCAACCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
20100922 TCTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTG
715 TCTGCATGACAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTG
* *
20100987 AAGTTTCATGGCAAGACGGCTCATTTCAT
780 AAGTTTCATAGCAAGACGACTCATTTCAT
* * * * *
20101016 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTAAGCTAAAAAGTCGAAGTGTACAAGAT
1 GTGATCATTGCATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCTACAAGAT
* *
20101081 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTG
66 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTAGCAGCAAACCTG
* **
20101146 TAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAA
131 TAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAA
* *
20101211 TAAAAGGGCCAAG-CCTAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGG-CCCCCCGAT
196 TAAAAGGGCCAAGACC-AGCACCCATCACACATCATGTACGCACACCCCCTCCGGCCCCCCCGAT
*
20101274 CGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGACCCGACGAA
260 CATCGGAACCCCAATGCCACCGGTCAGGTTCT-C--TGA-----T---GATGGTGACCCGACGAA
* * ** * **
20101339 GAAAAATGCGACACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGGTCCG
314 GAAAAATGCGACACCAGCAAATGCCCGAGCCCAGCATGTCCAACCACAACCCTCGGTCCAGTCCG
* * *
20101404 ATATTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
379 ATATTAAACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
** * * *
20101469 CCACGAAACGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGAT
444 CCACGAAACGAGCGTGCAGGCACTCAGCCAGCCAAAGGGGCGAGATGCGCAAGCCGGGGATCGAT
* * * * * *
20101534 CGGGTCCT-CCTCTACGTGCTGTCGATCCTACTACCGTAACCCTCAG-TCTGGTCCAATGTTAGA
509 CGGGT-CTACCTCTACGTGCTGCCGATCCTACTACCGCAAACCT-AGATCCGATCCAATCTTAGA
* * * ** *
20101597 CTGGGAATGAACTCCATATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGTAGGGGGGTGGGCA
572 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCAGACGGGCGGGCA
* * * *
20101662 CTACGTCGG-CTAGAGAGGC-AGGATGCG-CAACCTGTGGATCAATAGGGTGGTAGGTGGGTTTA
637 CTACGCCGGTC-AGAGAGACGA-GATACGCCAACC-ATGGATCAATAGGGTGGTAGGTGGGTTTA
* * * *
20101724 GGCACATCTTCATATTTCTGCATGACAATGTCATTTTTGTGGTTTGTAAATTCATACAATGGTCC
699 GGCACATCTTCATATTTCTGCATGACAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCC
* *
20101789 TTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTT
764 CTTAAGCCGTCACGTGAAGTTTCATAGCAAGACGACTCATTT
20101831 TCTATTTTTC
Statistics
Matches: 700, Mismatches: 98, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
807 41 0.06
808 34 0.05
809 189 0.27
810 3 0.00
815 1 0.00
817 6 0.01
818 423 0.60
819 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (808 bp):
GTGATCATTGCATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTCTACAAGAT
TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTAGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAA
TAAAAGGGCCAAGACCAGCACCCATCACACATCATGTACGCACACCCCCTCCGGCCCCCCCGATC
ATCGGAACCCCAATGCCACCGGTCAGGTTCTCTGATGATGGTGACCCGACGAAGAAAAATGCGAC
ACCAGCAAATGCCCGAGCCCAGCATGTCCAACCACAACCCTCGGTCCAGTCCGATATTAAACTAG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
CGTGCAGGCACTCAGCCAGCCAAAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCTACCTC
TACGTGCTGCCGATCCTACTACCGCAAACCTAGATCCGATCCAATCTTAGACTGGGAATGAACTC
CATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCAGACGGGCGGGCACTACGCCGGTCAGA
GAGACGAGATACGCCAACCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCATGACAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGA
AGTTTCATAGCAAGACGACTCATTTCAT
Found at i:20103661 original size:904 final size:901
Alignment explanation
Indices: 20101014--20105215 Score: 5630
Period size: 904 Copynumber: 4.7 Consensus size: 901
20101004 GGCTCATTTC
* * *
20101014 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTAAGCTAAAAAGTCGAAGTGTACAAG
1 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * ** *
20101079 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA-CTAGCAGCAAAC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACAGCTACCGA-CAGCAAAC
* * * * *
20101143 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATTAGGGATAGGGGGC
130 CTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGC
* *
20101208 CAATAAAAGGGCCAAG--CCTAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGG-CCCCC
195 CAATATAAGGGCCAAGTACCT-GCACCCATCGCACATCATGTGCGCACACCCCC-CAGGCCCCCC
* * * * * * * *
20101270 CGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGACCCGA
258 CGATTGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA
* * * * * ***
20101335 CGAAGAAAAATGCGACACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
323 CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGACCCA
* * *
20101400 TCCGATATTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
388 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGT
* * *
20101465 CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGTAAGCCGGGGAT
453 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCC-GGGAT
* * * * * * *
20101530 CGATCGGGTC-CTCCTCTACGTGCTGTCGATCCTACTACCGTAACCCTCAGTCTGGTCCAATGTT
517 CGATCGGGTCTC-CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTT
* * * ** *
20101594 AGACTGGGAATGAACTCCATATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGTAGGGGGGTGG
581 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GG-AGGCTGGTAG
* * * * * *
20101659 GCACTACGTCGGCTAGAGAGGCAGGATGCGCAACCTGTGGATCAATAGGGTGGTAGGTGGGTTTA
644 GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
20101724 GGCACATCTTCATATTTCTGCATGACAATGTCATTTTTGTGGTTTGTAAATTCATACAATGGTCC
709 GGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
20101789 TTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAA
774 TTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAG
* * * *
20101854 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTCGGAAGGCGTTTTGG-CCCAAACCTGGTAG
839 CTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
20101917 ACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
1 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
20101982 ATTTTGTGACCATTTGAAAAAAGTGTCCCC-TTTTCAGACACTTTAA-AGGCTACCGGCAGCAAA
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT-AGACACTTTAACA-GCTACCGACAGCAAA
*
20102045 CCTGTAAAATGTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCAT-AGGAG
129 CCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGG-G
* *
20102109 GCCAATATAAGGGCCAAGTACCTTCACCCATCGTACATCATGTGCGCACACCCCCCCAGGCCCCC
193 GCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGGCCCCC
* * * * *
20102174 CCAATTGCC-AGAACCCTAATGCCATCGGTCAGGTTCTCCGATAATGCTCCGGTGATGGTGCCCT
257 CCGATTGCCGA-AACCCTAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC
** * * * * *
20102238 GGTGAAGAAAAATGCGGCACCCGCACATGCTCGAGCCCAGCATATGCTATCGAAACCCTCGGTCC
321 GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGG-AC
* * * *
20102303 GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATG
385 ---CC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATG
* * * * * *
20102368 CCTACGTCAACCTACGAAACGAGCGTGCAGGCGCTCTGTCGGCCAGAGGGGCGGGATGCGCAAGC
446 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGC
* * * * * *
20102433 CGGGGATCGACCAGGTC-CCCATCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTC
511 C-GGGATCGATCGGGTCTCCC-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTC
*
20102497 CAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGA
574 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGA-GG-
20102562 CTGGTAGGCACTACG-CTGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGG
637 CTGGTAGGCACTACGTC-GGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGG
20102626 TGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
701 TGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20102691 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
766 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * *
20102756 TTTTGAAGCTTTCTGCGGTTCAGGATTTTTTAAAATTTTTTGGGAAGGATTTTTGGCCCCAAACT
831 TTTTGAAGCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACT
20102821 TGGTAG
896 TGGTAG
* * * *
20102827 ATGTCATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCTGCTAAAAACTCGAACTGTACAAG
1 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
20102892 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAACAGCTACCGACAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACAGCTACCGACAGCAAACC
*
20102957 TGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGCATAAGGGGCC
131 TGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCC
* *
20103022 AATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGTGCACACCCCCCAGGCCCCCCCAA
196 AATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCCCGA
* ** * *
20103087 TTACCGAAAATCTAATGCCATCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
261 TTGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
*
20103152 AGAAAAATGCGGCACCAGCACATGCTCGAGCCCCAGCATGTGCTACCGTAACCCTCAGACCCATC
326 AGAAAAATGCGGCACCAGCACATGCTCGAG-CCCAGCATGTGCTACCGTAACCCTCGGACCCATC
* * * *
20103217 CGATCTTAGGCTAGGAATGAACTCCGTACGCTTAGAATGGGAATGAACTCCATATGCCTATGTCA
390 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCA
* *
20103282 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA-GGGCGGGATGCGTAAGCTAGGGATCG
455 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGC-CGGGATCG
* * * * * **
20103346 GTCGGGTCTGCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCGATCTGATCTTAGA
519 ATCGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGA
*
20103411 CTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGACTGGTAGGCA
584 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGA-GG-CTGGTAGGCA
20103476 CTACG-CTGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
647 CTACGTC-GGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
20103540 CACATCTTCAAATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTT
711 CACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTT
20103605 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAGCT
776 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAGCT
*
20103670 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGATTTTTGGCCCCAAACTTGGTAG
841 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
20103731 ATGTCATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCTGCTAAAAACTCAAACTGTACAAG
1 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
20103796 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAACAGCTACCGACAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACAGCTACCGACAGCAAACC
*
20103861 TGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGCATAAGGGGCC
131 TGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCC
* *
20103926 AATATAAGGGCCAAGTACCTGCACCAATCGCACATCATGTGTGCACACCCCCCAGGCCCCCCCGA
196 AATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCCCGA
* * * *
20103991 TTGTCGAAAACCTAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGA
261 TTGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
* * **
20104056 AGAAAAATGCGGCACCAGCACATGATCGAGCCCAGCATCTGCTACCACAACCCTCGGACCCATCC
326 AGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGACCCATCC
* * * *
20104121 GATCTTAGGCTGGGAATGAACTTCGTACGCTTAGAATGGGAATGAACTCCATATGCCTATGTCAA
391 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAA
* * * *
20104186 CCCACGAAACGAGCGTGTGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATC-A
456 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCG-GGATCGA
* * * * * *
20104250 TTCGGGTCTACCTCTGCGTGCTGTCGATCATGCTGCCACAACCCTC-GGCCTGATCCAATCTTAG
520 -TCGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCC-GGTCCAATCTTAG
* ** * *
20104314 ATTGGGAATGAACTCC-TATGCCTAAGCCAACCGATGAAATAAACGGGC-GA-GC--GT--GTAC
583 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGAGGCTGGTAGGCAC
* * * * *
20104372 TACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGAATCGATAGGCTGGTAGGTGGGTTTAGGCA
648 TACGTCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20104437 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CTCTT
713 CATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT-TT
* * *
20104501 AAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTTGAAAG-T
777 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG-AAGCT
* * * *
20104565 TTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAG
841 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
20104626 ATATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAAATAAGCTAAAAATTCGAAGTGTACAA
1 ATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* ** * *
20104690 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTG-CAGCAAG
65 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACAGCTAC-CGACAGCAAA
* * *
20104754 CCTGTAAAATCTCAAATGCTCTTTAAAGGGG-TGTGAGTTCTTGAGGTTTGATTAGGGAT-AGGG
129 CCTGTAAAATCTCAAATGCTCTTT-AAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGGG
* * * *
20104817 GCCAATATAAGGGTCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
193 GCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCC
* * * * * * *
20104882 CGATCGTCGGAA-CCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGACACG
258 CGATTGCCGAAACCCT-AATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
** * * * * * * * * *
20104946 ATAAAGAAAAATGTGACACCAGCAAATG-TCCGAGTCCAGCATGTGCTGCGGTAGCCCTCGGTCT
322 ACGAAGAAAAATGCGGCACCAGCACATGCT-CGAGCCCAGCATGTGCTACCGTAACCCTCGGACC
** * * * *
20105010 GGTCCGATATTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
386 CATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAA
* *
20105075 GTCAACCCACGAAACGAGCGTGC-GG-GCTCAACCGGCCAGA-GGGTGGGATGCGTTAAGCCGGG
451 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG-TAAGCCGGG
* * * * * * * * **
20105137 ATTGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGTAACCCTC-GATCTGGTCTGATC
515 ATCGATCGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCCAATC
20105201 TTAGACTGGGAATGA
579 TTAGACTGGGAATGA
20105216 TCCCTTAAGC
Statistics
Matches: 2962, Mismatches: 296, Indels: 94
0.88 0.09 0.03
Matches are distributed among these distances:
891 70 0.02
892 22 0.01
893 6 0.00
894 252 0.09
895 379 0.13
896 11 0.00
897 2 0.00
899 1 0.00
900 1 0.00
902 7 0.00
903 344 0.12
904 848 0.29
905 209 0.07
906 3 0.00
908 1 0.00
909 125 0.04
910 673 0.23
911 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACAGCTACCGACAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCC
AATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCCCGA
TTGCCGAAACCCTAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGACCCATCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGATCGAT
CGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGAGGCTGGTAGGCACTAC
GTCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAGCTTTTTG
CGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAG
Found at i:20105049 original size:26 final size:26
Alignment explanation
Indices: 20105019--20105070 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20105009 TGGTCCGATA
20105019 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
20105045 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
20105071 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20106697 original size:716 final size:707
Alignment explanation
Indices: 20105252--20106723 Score: 2229
Period size: 716 Copynumber: 2.1 Consensus size: 707
20105242 TCTGCTGCCG
* * * * *
20105252 CAACCCTCGGCCCGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAACCGATTAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * ** * * * *
20105317 ATGAGCGGGCGGGTGGGTACTACGTCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGG
66 ATGAGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGG
* *
20105382 CTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
131 CTGGTAGGAGGGTTTAGGCACATCTTCATATTACTACATGCCAATGCCATTTTTATGGCTTGTAA
*
20105447 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTATCTATTT
196 ATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTATCTATTT
20105512 TTCATGATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTGTTGGAAGGCATTTATGC
261 TTCATGATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTGTTGGAAGGCATTTATGC
* * *
20105577 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACT
326 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
* * *
20105642 CGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTA
391 CGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCCA
* *
20105707 CTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
456 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
*
20105772 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
521 GGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
* * * *
20105837 CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCTGTCAAGTTCTCCGACGATGCTCCGACGATGG
586 C-GACCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGG
* * *
20105902 TGCCCCGATGAAGAAAAATACGATAGCAGCACATGCCCGAGCCCAGCATGTGCTACCA
650 TGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCA
** * *
20105960 CAATGCTCGGT-TCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
1 CAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT--
*
20106024 AACGAGCAGATGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGA
63 ---GA--A-ATGAGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGA
* * * *
20106089 ATCGATAGGGTGGTAGGAGGGTTTTGGCACATCTTCATATTACTGCATGGCAATGCCATTTTTAT
122 ATCGATAGGCTGGTAGGAGGGTTTAGGCACATCTTCATATTACTACATGCCAATGCCATTTTTAT
* *
20106154 GGCTTGTAAATTCAAACAATGGT-CCTTGAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCG
187 GGCTTGTAAATTCAAACAATGGTCCCTT-AAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCG
* *
20106218 TTTTCTATTTTTCATGATTTTCAAAACTTTTT-GTGGTTCAGGATTTTTTAAAATTTTTTTGGAA
251 TTATCTATTTTTCATGATTTTCAAAACTTTTTAG-GGTTCAGGATTTTTTAAAATTTTGTTGGAA
*
20106282 GGTATTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAA
315 GGCATTTAT-G-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAAAA
* *
20106346 ATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACAATTTGAAAAAGGTGTCCCCA-TTCTA
376 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTC-A
*
20106410 -ACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
440 GACACTTTAAAGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
**
20106474 TCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATTGCACATC
505 TCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
* * *
20106539 ATGTGCGCACACCCCCC-ACCCCCGATCGCCGAAACTCTAATGCCGTCGGTCAGGTTCTCCGACG
570 ATGTGCGCACACCCCCCGACCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACG
* * *
20106603 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
635 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATG
20106668 TGCTACCA
700 TGCTACCA
20106676 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
20106724 TTAGACTGGG
Statistics
Matches: 686, Mismatches: 61, Indels: 26
0.89 0.08 0.03
Matches are distributed among these distances:
708 53 0.08
713 1 0.00
715 7 0.01
716 378 0.55
717 43 0.06
718 142 0.21
719 62 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (707 bp):
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ATGAGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGG
CTGGTAGGAGGGTTTAGGCACATCTTCATATTACTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTATCTATTT
TTCATGATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTGTTGGAAGGCATTTATGC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCCA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
GGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
CGACCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGT
GCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCA
Found at i:20106726 original size:26 final size:26
Alignment explanation
Indices: 20106697--20106749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20106687 CTGGTCCGAT
20106697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20106723 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20106749 C
1 C
20106750 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20107627 original size:26 final size:26
Alignment explanation
Indices: 20107598--20107650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20107588 TCGGTCCGAT
* *
20107598 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
20107624 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
20107650 C
1 C
20107651 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:20108069 original size:903 final size:889
Alignment explanation
Indices: 20105978--20111664 Score: 7395
Period size: 874 Copynumber: 6.4 Consensus size: 889
20105968 GGTTCGATCC
* * * **
20105978 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCAGATGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
20106043 GGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGAG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
20106108 GGTTTTGGCACATCTTCATATTACTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCAAACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
20106173 TGGT-CCTTGAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 TGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** * *
20106237 TTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGTA-TTTTGGCCCCAAACT
260 TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGG-AGTTTTGGCCCCAAACT
*
20106301 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAATTCAGCTAAAAACTCGAAG
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC---ATAAAAAATTCAGCTAAAAACTCGAAG
* * * *
20106366 TGTACAATATTTTGTGACAATTTGAAAAAGGTGTCCCCA-TTCTA-ACACTTTAATGGCCACTGG
385 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGG
*
20106429 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
449 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* ** *
20106494 CAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCC--
514 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * * * *
20106556 ACCCCCGATCGCCGAAACTCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
579 CCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGC
* *
20106621 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
644 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
20106686 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
709 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** *
20106751 TAAGTCATCCCACAAAACGAGCGTGCGGCCG-TCAAGCGGCCAGAGGGGCGGGATGCGCAAGCCA
774 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-AGCGGCCAGAGGGGCGGGATGCGCAAGCC-
*
20106815 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTTGGTCCGGTCT
837 GGGATCGACCGGGTCCCCCTCTG-GTGCTGCCA-TCCTGCTG---C-A--C-TGGT-CGGTCT
* *
20106878 GATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-
* * *
20106942 C-GACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
20107006 GGGTTTAGGTACATCTTCATATTTCTTCCTACCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
20107071 AT-GTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
20107135 TTGGAAACTTTTT-GGCGTTCGGGATTTTTTAAAATTTTTTTCGAGGGAGTTTTGGCCCTAAGCT
260 TTCGAAACTTTTTACG-GTTCGGGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACT
* * *
20107199 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCAAAAAACTCGATGTGT
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
20107264 ACAAGACTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
20107329 AAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
20107394 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACAAACCCCCCCGGCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--ACCCCCCCGGCC
* * *
20107459 CCCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCC
581 CCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCC
* * * * *
20107524 CGACGAAGAAAAATGCGGCACCTGCACATGCCCGAGCCCAGGATGTGCTGTCGTAACCCTTGGT-
646 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
20107588 TCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCTGTATGCCT
711 T-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
*
20107653 AAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
775 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCC-G
*
20107718 GGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGGTCTGGTCT
838 GGATCGACCGGGTCCCCCTCT-GGTGCTGCC-ATCCTGCTG---C-A--C-TGGTC-GGTCT
* * * *
20107780 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* *
20107845 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAGAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
20107910 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
20107975 TGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
20108040 TTGAAA-TTTTTGCGGTTCGGGACTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTG
261 TCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTG
* *
20108104 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTCAAAACTCGAAGTGTAC
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTAC
20108169 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
20108234 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
20108299 GCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGGGCACA-CCCCCCGGCCCCTC
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-C
* *
20108363 CGATCG-TCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCC
584 CGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAG-CGATGGTGCCCC
* * *
20108426 GATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCT
647 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * *
20108491 GGTCCGATCTTGGACT-AGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
712 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
20108555 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGAGG
777 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCG-GG
** * *
20108620 ATCGGTCGGGTCCCCCTCTGTGTGCTGCC-TACTGC--CA---GTCCAGTCT
840 ATCGACCGGGTCCCCCTCTG-GTGCTGCCATCCTGCTGCACTGGT-CGGTCT
**
20108666 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A----G-GAACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * ** * *
20108723 AGACGGGCACTACGCCGGCCAGAGAGATAGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
20108788 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG-CAATTTTATGGCTTGTAAATGCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
20108852 TGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
20108917 TCGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGT-
261 TCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTG
* *
20108980 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTA
*
20109045 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * **
20109110 AACCTGTAAAGTCTCAAATGCTCTTTAAGGGGTTACGAGTTCTCGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
20109175 GGCCACTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCCGGGCAC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCC-GGCCC
* * * * * ** * * *
20109240 CTCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGGTGATGCT-CTGATGATGGTGCCT
582 CCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAG-CGATGGTGCCC
** * * **
20109304 CGATAAAGAAAAGTACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAATC
646 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
20109369 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTA
711 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
20109433 AGTCAACCAATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGGG
776 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCC-GG
* * * *
20109497 GATCGATCGGGTCCCCCTTTGTGTGCTGTCGATCTTGCT--ACTGGTCGGAT-T
839 GATCGACCGGGTCCCCCTCTG-GTGCTG-CCATCCTGCTGCACTGGTCGG-TCT
* * *
20109548 CGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCAGGCAGA
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--G-
* * *
20109613 CGGGTAGGCGGGCGGCCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGG
61 C--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
**
20109678 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGCTTGTAAA
122 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
20109743 CTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
187 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
20109808 TCATGATTTTTGAAA---TTT----TT---G------T---A---GTT---AGGAGTTTTCGCCC
252 TCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCC
* * * * *
20109848 CTAA-TGCGGTAGACGTGATCCTTGTA-TTTTGTCTGGCATTTACA-AAAAAATTCAACAAAAAA
317 CAAACT-TGGTAGACGTGATCCTTGTATTTTTGT-TGGCA--TGCATAAAAAATTCAGCTAAAAA
* * * * *
20109910 CTCGAAGTGCACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTATACACTTTAACGGC
378 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
20109975 TACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGAT
443 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
20110040 GAGGGATAGGGGGCCAATATAAGGGCCAAGTTCTAGCACCCATCGCACATCATATGCGCACACCC
508 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *** * *
20110105 CCCCGACCCCCCCGATCG-TCGAAACCCCAATTTTGCCAGTCAGGTTCTCTGACGATGCTCCAGC
573 CCCCG-GCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGC
** * *
20110169 GATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCA-ATTGCCCGAGCCTAGCATGTGCTGCCGT
636 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCCGC
*
20110233 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACT
700 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
20110298 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGGTCAACTGGCCAGAGGGGCGGGATG
765 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATG
* ** * * * *
20110363 CGCAAGCCGAGGATCGGCCGCATCCCCCTCT-GTG-TGCTA-CC-GAT---CTGATC---CA
829 CGCAAGCCG-GGATCGACCGGGTCCCCCTCTGGTGCTGCCATCCTGCTGCACTGGTCGGTCT
* * *
20110415 G-TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGA----GCGGACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
20110475 -GGC---CACTACGCCGGCCAGAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAAGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
***
20110536 GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
20110601 TGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCAGGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
20110666 TCGAAACTTTTAACGGTTCGGGATTTTTTAAAATCATTTTCGAAGGAGTTTT-GCCCCAAACTTG
261 TCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGAAGGAGTTTTGGCCCCAAACTTG
* * * *
20110730 GTAGACGTGATCCTTATATTTTTGCTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* * * * * *
20110795 CAAGATTTTTTGACCAATTGAAAAAAGTGTCCCCATTGCAGACACTTTAATTGCTATTAGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
20110860 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
20110925 GGCCAAAATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCG
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-
** * *
20110990 CCGATCGCTGGAACCCTGATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
583 CCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCG
** * * ** *
20111055 GTGAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCCTTTGTCCG
648 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
20111120 GTTCGATCTTAGATTGGGAATAAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
713 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
20111185 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGAGCCAAATGGGCGTGCTGCTCAAGCTGGGGA
778 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCG-GCCAGAGGGGCGGGATGCGCAAGC-CGGGA
* * * *
20111250 TCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTGCT--A-TGGTCTGGTCC
841 TCGACCGGGTCCCCCTCTG-GTGCTGCC-ATCCTGCTGCACTGGTC-GGTCT
* * * ** * *
20111299 GATCTTAGACTGTGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGTAGGCGAGCGGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
20111364 GGGTGGGCACTATGTCGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
20111429 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
20111494 TGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
20111559 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTG
261 TCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTG
*
20111624 GTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
20111665 GGCCAATATA
Statistics
Matches: 4229, Mismatches: 424, Indels: 275
0.86 0.09 0.06
Matches are distributed among these distances:
849 180 0.04
852 5 0.00
853 3 0.00
855 1 0.00
856 2 0.00
857 1 0.00
859 1 0.00
860 2 0.00
861 2 0.00
865 45 0.01
866 1 0.00
868 1 0.00
870 5 0.00
871 2 0.00
872 6 0.00
873 12 0.00
874 459 0.11
875 189 0.04
876 316 0.07
877 360 0.09
878 159 0.04
879 200 0.05
880 38 0.01
882 4 0.00
883 47 0.01
884 4 0.00
885 49 0.01
886 49 0.01
887 1 0.00
889 7 0.00
890 4 0.00
892 7 0.00
893 221 0.05
894 47 0.01
895 62 0.01
896 132 0.03
897 6 0.00
898 146 0.03
899 262 0.06
900 247 0.06
901 334 0.08
902 105 0.02
903 440 0.10
904 65 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
ATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGAC
CGGGTCCCCCTCTGGTGCTGCCATCCTGCTGCACTGGTCGGTCT
Found at i:20109421 original size:25 final size:26
Alignment explanation
Indices: 20109378--20109429 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20109368 CCGGTCTGAT
20109378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20109404 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20109429 C
1 C
20109430 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20110282 original size:26 final size:26
Alignment explanation
Indices: 20110253--20110305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20110243 CTGGTCCGAT
20110253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20110279 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20110305 C
1 C
20110306 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20111156 original size:26 final size:26
Alignment explanation
Indices: 20111127--20111179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20111117 CCGGTTCGAT
*
20111127 CTTAGATTGGGAATAAACTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
20111153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
20111179 C
1 C
20111180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:20111897 original size:26 final size:26
Alignment explanation
Indices: 20111868--20111920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20111858 CCTATCCGAT
20111868 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
20111894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20111920 C
1 C
20111921 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20113517 original size:887 final size:887
Alignment explanation
Indices: 20111665--20115113 Score: 4426
Period size: 887 Copynumber: 3.9 Consensus size: 887
20111655 GCATAAAAAA
* * * *
20111665 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGTAGACCCCCCTCGGCCCC
1 GGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCC
* * *
20111730 CCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGATGATGGAGCCC
65 CCCGATCGTC-GGAACCCTAATGCCGTCAGTCAGGTTCTC---CG--G---C---GATGGTGCCC
* * * * *
20111794 CAAC-GAGGAAAAATACGGCACCAGCACATGGCCGATCCTAGCATGTGCTACTGCAACCCTCGGT
118 CGACGGA-GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGT
* * * * *
20111858 CCT-ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
182 CCTGATCTGATATTAGACT-GGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCC
* * * * *
20111922 TAAGTCAACCCACGAAATGAGCGTATGGGCGCTCA-ACAGGCCAGAGGGGTGGGATGCGCAAGCC
246 TAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAGCCA-GCCAGAGGGGCGGGATGCGCAAGCC
* * * * *
20111986 GGGGATCGATCAGGTCCCCCTCTGCGTGCTGTTGATCCGGCTACCACAACCCTTGCTCTGGTCTG
310 GGGGATCGACCAGGT-CCCCTCTGC-TGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTG
* * * *
20112051 ATCTTAGCCTGGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCG
373 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCG
* * * * * *
20112116 GGCACTACGCGGGCCAGAGAGATGGGATGCAC-AGCCATGGATCGATAGGGTGGTAGGTGGGTTT
438 GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTT
**
20112180 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
503 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * * * *
20112245 CTTTAAGCCTTCCCATGAAGTTTCAAGGCAACACAACTCGTTTTCTATTTGTCATGATTTTT-AA
568 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAA
* *
20112309 ATTTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGA--ATTGGCCCCAAACTTGGT
633 A-CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCA-AAAG-GATTTTTGGCCCCAAACTTGGT
* * * * * *
20112372 AGAAGTGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCATCTAAAAAGTTGAAGTGTACA
695 AGAAGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
20112437 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
760 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
20112502 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
825 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * * * *
20112565 GACCAATATAAGGGCCAAGAACCAGCACCCATTGGACATCATGTGTGCACA-CCCCCCGACCCCC
1 GGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* *
20112629 CTGATCGTCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCGATGGTGCCTCGACGGAGAAAAA
66 CCGATCGTCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCGATGGTGCCCCGACGGAGAAAAA
** *
20112694 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTTGGT-CTGATCTGATATT
131 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCCTGATCTGATATT
** *
20112758 AGGTTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTTCGTATGCCTAAGTCAACCCACG
196 AGACT-GGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * ** *
20112823 AAAGGAGTGTACGGGCGCTCAGCCAACCAGCGGGGCGGGATGCTCAAGCCGGGGATCGGTCGGGT
260 AAAGGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGT
* * * ** *
20112888 CCCCATCTACTTGCTGCCGATCCTTCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
325 CCCC-TCTGC-TGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
* * ***
20112953 TGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-GGCGGACGGGCGAGCACTATGTCGGCC
388 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGGCACTACACCGGCC
* *
20113017 AGAGAGACGGGATGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATA
453 AGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
20113082 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACG
518 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
20113147 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCA
583 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCG
* * *
20113212 AGATTTTTTAAAAATTTTTCAAAAGGATTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATT
648 AGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATT
* *
20113277 TTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCG
713 TTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
20113342 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATG
778 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * *
20113407 CTCTGTAAGGGGGTGTCAGTTCACCAGGTTTGATGAGGGATAGGG
843 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
20113452 GGCCAATATAAGGGCCAAGAACCAGCACCCATCGGACATCATGTGTGCACA-CCCCCCGGCCCCC
1 GGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
20113516 CTGATCGTCGGAATCGC-AATGCCGTCGGTCCGGTTCTCCGGCGATGGTGCCTCGACGGAGAAAA
66 CCGATCGTCGGAA-CCCTAATGCCGTCAGTCAGGTTCTCCGGCGATGGTGCCCCGACGGAGAAAA
** * * * *
20113580 ATGTGGTACCAGCACATGCCCGAGCCCAGCATGCGCTGCAGCAACCCTTGGT-CTGATCTGATAT
130 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCCTGATCTGATAT
* *
20113644 TAGGCTTGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCAC
195 TAGAC-TGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** *
20113709 GAAAGGAGCGTACGGGCACTCAGCCGGCCACTGGGGCGGGATGCGCAAGCCGGGGATCGACCGGG
259 GAAAGGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGG
* * * * *
20113774 TCCCCTTCTGCATGCTGTCAATCCTACTACCGCAACCCTCGGTCTAGTTTGATCTTAGACTGGGA
324 TCCCC-TCTGC-TGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* *
20113839 ATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCATGCGGGCGGACGGGCGGGCGGGCACT
387 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCAGGCGGA----CGGGCGGGCACT
*
20113904 ACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAT
444 ACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
20113969 ATCCTCATATTTCTGTGTGCGAATTCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAA
509 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
20114034 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTTGAAACTTTT
574 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTT
* * ** * * * * *
20114099 TGCGGTTGGGGA-TTTTTAAAATTTTTTTGAAAGGAGTTTTGGGCACAAACCTGGTAGACGTGAT
639 TGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGAT
* *
20114163 CTTTATATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
704 CCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
20114228 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
769 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
20114293 TCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
834 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * * * *
20114347 GGCAAATATAAGGGCCAAGTACCAGCACTCA-CTGCACATTATGTGCGCATACCCCCCCGGCCCC
1 GGCCAATATAAGGGCCAAGAACCAGCACCCATC-GCACATCATGTGCGCACACCCCCCCGGCCCC
* * * *
20114411 CCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCC
65 CCCGATCGTCGGAACCCTAATG---CC-GTCA-G---T-C-A-GGTTCTCCGGCGATGGTGCCCC
* * * * * * *
20114476 GATGAAGAAAAATACGG-ATCCAGCACATGCCCGAGCCTAGCATGTGCTGCCGAAACCCTCAGTC
119 GACGGAGAAAAATACGGCA-CCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTC
* * * * * *
20114540 CCGTTC-GATCTTAGACTGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTA
183 CTGATCTGATATTAGACTGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTA
* * * * * ** *
20114604 AGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATTTGCAAGACGGG
248 AGTCAACCCACGAAAGGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * **
20114669 GATC-AGCCAGGTCCCC-CT-CTGC-GT-G---CTGCT---GCAATCCTCAGTCTGGTCCAATCT
313 GATCGA-CCAGGTCCCCTCTGCTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCT
* *
20114723 TAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGGAACGAGC--G-GG-CGGGCGGGCA
377 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGGCA
*
20114784 CTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
442 CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
* * *
20114849 ACATCTTCATATTTCTATGTGCCACTACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
507 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
20114914 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
572 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTT
* * * *
20114979 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCTAACTTGGTAAAAGTG
637 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTG
* * *
20115044 ATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
702 ATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTT
20115109 GTGAC
767 GTGAC
20115114 NNNNNNNNNN
Statistics
Matches: 2265, Mismatches: 246, Indels: 93
0.87 0.09 0.04
Matches are distributed among these distances:
882 207 0.09
883 106 0.05
885 2 0.00
886 46 0.02
887 1018 0.45
888 11 0.00
889 1 0.00
890 4 0.00
891 3 0.00
892 7 0.00
893 1 0.00
894 60 0.03
895 265 0.12
896 229 0.10
897 4 0.00
898 40 0.02
899 8 0.00
900 46 0.02
901 3 0.00
902 3 0.00
903 1 0.00
904 3 0.00
905 2 0.00
906 114 0.05
907 77 0.03
908 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CCGATCGTCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCGATGGTGCCCCGACGGAGAAAAA
TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACAGCAACCCTCGGTCCTGATCTGATATT
AGACTGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AAGGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTC
CCCTCTGCTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGGCACTACACCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGAGA
TTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTT
CTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
Found at i:20114577 original size:25 final size:26
Alignment explanation
Indices: 20114549--20114600 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20114539 CCCGTTCGAT
*
20114549 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20114574 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20114600 C
1 C
20114601 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20116233 original size:20 final size:20
Alignment explanation
Indices: 20116210--20116287 Score: 65
Period size: 21 Copynumber: 4.0 Consensus size: 20
20116200 TTGAATCTCT
*
20116210 TTTTTTCATTTTCTCATTTC
1 TTTTTTCCTTTTCTCATTTC
*
20116230 TTTTCTT--TTTT-TC-TTTT
1 TTTT-TTCCTTTTCTCATTTC
* *
20116247 TTTTTTCCTTTTTTCATCATC
1 TTTTTTCCTTTTCTCAT-TTC
20116268 TTTTTTCTCTTTTCTCATTT
1 TTTTTTC-CTTTTCTCATTT
20116288 TTCATCCATT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
16 2 0.04
17 7 0.15
18 6 0.13
19 6 0.13
20 5 0.11
21 11 0.24
22 9 0.20
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTCCTTTTCTCATTTC
Found at i:20116250 original size:9 final size:8
Alignment explanation
Indices: 20116207--20116249 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
20116197 AATTTGAATC
20116207 TCTTTTTT
1 TCTTTTTT
* *
20116215 TCATTTTC
1 TCTTTTTT
20116223 TCATTTCTTT
1 TC-TTT-TTT
20116233 TCTTTTTT
1 TCTTTTTT
20116241 TCTTTTTT
1 TCTTTTTT
20116249 T
1 T
20116250 TTTCCTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 20 0.69
9 5 0.17
10 4 0.14
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (8 bp):
TCTTTTTT
Found at i:20116250 original size:12 final size:12
Alignment explanation
Indices: 20116226--20116260 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
20116216 CATTTTCTCA
20116226 TTTCTTTTCTTTT
1 TTTCTTTT-TTTT
20116239 TTTCTTTTTTTT
1 TTTCTTTTTTTT
*
20116251 TTCCTTTTTT
1 TTTCTTTTTT
20116261 CATCATCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:20120107 original size:61 final size:60
Alignment explanation
Indices: 20120025--20120138 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 60
20120015 TTGTGTAGGG
*
20120025 AAATTGATGCTTTCAACTTTTCCTC-AAAATATTTTTTTT-GAAAACTTTGATTTCCAAGGA
1 AAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTAG-AAACTTTGATTTCCAAGGA
*
20120085 AAATTCGATACTTTCAACTTTTCCCAAAAATATTTTTTTTAGAAATTTTGATTT
1 AAATT-GATACTTTCAACTTTTCCCAAAAATATTTTTTTTAGAAACTTTGATTT
20120139 TTATTTAAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
60 6 0.12
61 42 0.86
62 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (60 bp):
AAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTAGAAACTTTGATTTCCAAGGA
Found at i:20120167 original size:13 final size:13
Alignment explanation
Indices: 20120149--20120204 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
20120139 TTATTTAAAG
*
20120149 AAAATAGAATAAT
1 AAAATAGAAAAAT
20120162 AAAATAGAAAAAT
1 AAAATAGAAAAAT
* * *
20120175 AAAGAAAGTAAAAC
1 AAA-ATAGAAAAAT
20120189 AAAAT--AAAAAT
1 AAAATAGAAAAAT
20120200 AAAAT
1 AAAAT
20120205 TAAGATAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
11 9 0.26
13 16 0.46
14 10 0.29
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (13 bp):
AAAATAGAAAAAT
Found at i:20120627 original size:20 final size:20
Alignment explanation
Indices: 20120602--20120640 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20120592 GGTTAAAGAT
* *
20120602 TCACCGAATTTTGGGTTTTG
1 TCACCGAAATCTGGGTTTTG
20120622 TCACCGAAATCTGGGTTTT
1 TCACCGAAATCTGGGTTTT
20120641 TTCGTCGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (20 bp):
TCACCGAAATCTGGGTTTTG
Found at i:20121264 original size:10 final size:10
Alignment explanation
Indices: 20121249--20121292 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
20121239 ATATTACAAG
20121249 AAAAATAATA
1 AAAAATAATA
20121259 AAAAATAATA
1 AAAAATAATA
20121269 ATAATAATAATA
1 A-AA-AATAATA
*
20121281 AATAAATTATA
1 AA-AAATAATA
20121292 A
1 A
20121293 TATATAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.37
11 10 0.33
12 9 0.30
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATAATA
Found at i:20121284 original size:16 final size:16
Alignment explanation
Indices: 20121251--20121411 Score: 69
Period size: 16 Copynumber: 10.2 Consensus size: 16
20121241 ATTACAAGAA
20121251 AAATAATAA-AA-AAT
1 AAATAATAATAATAAT
20121265 -AATAATAATAATAAT
1 AAATAATAATAATAAT
*
20121280 AAATAAATTATAATATAT
1 AAAT-AATAATAATA-AT
*
20121298 AACA-AATATAGAACTATAT
1 AA-ATAATA-ATAA-TA-AT
20121317 AAATAA-AATACAT-AT
1 AAATAATAATA-ATAAT
* * *
20121332 AAACATTAAT-AGAA-
1 AAATAATAATAATAAT
20121346 AAAT-A-AATAAATAAAT
1 AAATAATAAT-AAT-AAT
*
20121362 AAATAAGTAAAAAT-AT
1 AAATAA-TAATAATAAT
*
20121378 ACAT-ATAATAATAAT
1 AAATAATAATAATAAT
20121393 AAATAATAA-AATACAT
1 AAATAATAATAATA-AT
20121409 AAA
1 AAA
20121412 ATACAAAAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 42
0.66 0.08 0.25
Matches are distributed among these distances:
12 3 0.03
13 8 0.07
14 13 0.12
15 22 0.20
16 24 0.22
17 16 0.14
18 13 0.12
19 12 0.11
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:20121355 original size:4 final size:4
Alignment explanation
Indices: 20121346--20121402 Score: 50
Period size: 4 Copynumber: 14.8 Consensus size: 4
20121336 ATTAATAGAA
* *
20121346 AAAT AAAT AAAT AAAT AAAT AAGT AAA- AATAT ACAT ATAAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT AAAT AAAT
20121393 AAAT -AAT AAA
1 AAAT AAAT AAA
20121403 ATACATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
3 11 0.25
4 30 0.68
5 3 0.07
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:20122304 original size:26 final size:26
Alignment explanation
Indices: 20122268--20122318 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20122258 TTGACTTAGG
20122268 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
20122294 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20122319 GATTGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:20123177 original size:26 final size:26
Alignment explanation
Indices: 20123146--20123198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20123136 GTTGACTTAG
*
20123146 GCATAC-GAAATTCATTCCCAGTCTAA
1 GCATACAG-AATTCATTCCCAGCCTAA
*
20123172 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAATTCATTCCCAGCCTAA
20123198 G
1 G
20123199 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGCCTAA
Found at i:20123624 original size:901 final size:894
Alignment explanation
Indices: 20121534--20124424 Score: 4195
Period size: 901 Copynumber: 3.2 Consensus size: 894
20121524 TACAGGTAGG
20121534 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
20121599 ACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
20121663 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-ACTAAAATGCGGACACTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTA-TGAAATGGGGACACTTTTT
*
20121727 TCAAATGGTCACAAAATCTTGTACGCTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAA
* * * *
20121792 AAATACAAGGATCACGTCTACAAAGTTTGGGGCGAAAAATCCATCCAAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * *
20121857 CTGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGATTCATCTTGCCATGAAACTTC
324 CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
*
20121922 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACCAAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAAA
* * *
20121987 ATATGAAGATGTGGCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
453 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
* * *
20122052 TGGCCGGCGTAGTGACCGCCCGTTCGCCCGTCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGA
518 TGGCCGGCGTAGTG-CTGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGA
* *
20122117 GTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACACAGA
582 GTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACATAGA
* * * * * ** * *
20122182 GGGGGACCCGGTTGATCCTCGGCTTACGCATCCGGCCCCTCTGGCCGGCTGAGCACCCACACGCT
647 GGGGGACTCGATCGATCC-CCGATTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCT
* * * *
20122247 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCT
711 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * *
20122312 AGTCTAAGATTGGACCGGACTGAAGGTT-GC-G-ACA------G--C--ACAAGT--TG-G--GG
776 AGTCTAAGATCGGACCAGACCGAGGGTTGGCAGCACATGCTGGGCTCGGGCATGTGCTGTGCCGA
* ** *
20122359 TTTTTCATCGTCGGGGCACCATCGCCAGATCATCGTCGGAGAACCTGACCGGCGGC
841 TTTTTCTTCGTCGGGGCACCATCG-TGGAGCATCGTCGGAGAACCTGA-CGGCGGC
* *
20122415 ATTGGGGTTTCGACGATC-AGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
20122478 ACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
20122543 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTT
* * *
20122608 CAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AACTTTTTTTGTGCATGCCAAAAA
196 CAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAA--TTTTTTGTGCATGCCAACAA
* * *
20122672 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* *
20122737 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTC
324 CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* * *
20122802 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCAGGTAGAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCA-AA
20122867 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
453 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
* * * *
20122932 TGGCCGGCATAGCGCTTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
518 TGGCCGGCGTAGTGC-TGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGA
* * *
20122997 GTTCATAT-CCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAACATCGGTTGCACGTAG
582 GTTCAT-TCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACATAG
* *
20123061 AGGGGGACTCGACCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCATACGCT
646 AGGGGGACTCGATCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCT
* *
20123126 CGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
711 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
20123191 AGCCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGC
776 AGTCTAAGATCGGACCAGACCGAGGGTT--GGCAGCACATGCTGGGCTCGGGCATGTGCT-GTGC
* * * *
20123256 CGTATTTTTCTTTGTCGAGGCACCATCGATGGAGCATCGTCGAAGAACCTGATCGACAGG-
838 CG-ATTTTTCTTCGTCGGGGCACCATCG-TGGAGCATCGTCGGAGAACCTGA-CGGC-GGC
* * *
20123316 ATTGGGGTTCCGGCAATC-GGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
20123379 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
20123444 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCCTTAAAGTGTATGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTT
* *
20123509 CAAATGCTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGTCAACAAA
196 CAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAA
*
20123574 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
260 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
20123639 TGAACCGCAAAACA-TTTCGAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
325 TGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* ** * *
20123703 ACGTGAAGGCTTAAGGCACTGTTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGCATAA
389 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCA-AA
* *
20123768 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTT
453 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
* * *
20123833 TGGCCGGCGTAGTGCCTGCCCGTCCGTCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACAGA
518 TGGCCGGCGTAGTG-CTGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGA
* * * * * *
20123898 GTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGTAGCAGGATCGGTGGCACATAGA
582 GTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACATAGA
* * *
20123963 GGGGGACTCGATCGATCCCCGACTTGCT-CATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGC
647 GGGGGACTCGATCGATCCCCGA-TTG-TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
* *
20124027 TCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTGATTCCCAGTTTAAGCATACGGAGTTCATTC
710 TCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
20124091 TCAATCTAAGATCAGAGCATACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
774 CCAGTCTAAGATCGGACCAGACCGAGGG-T-TGGCAGCACATGCTGGGCTCGGGCATGTGCT-GT
* * *
20124156 GCCGCATTTTTATTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACGTGCGGC
836 GCCG-ATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCGTCGGAGAACCTGACG-GCGGC
20124218 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
20124283 ACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
20124348 CATTTGAGATTTTGCAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTT
20124413 CAAATGGTCACA
196 CAAATGGTCACA
20124425 TCTACCAAGT
Statistics
Matches: 1803, Mismatches: 162, Indels: 67
0.89 0.08 0.03
Matches are distributed among these distances:
878 2 0.00
879 175 0.10
880 536 0.30
881 18 0.01
882 2 0.00
883 1 0.00
884 3 0.00
890 1 0.00
892 1 0.00
894 4 0.00
896 1 0.00
897 1 0.00
898 1 0.00
900 3 0.00
901 657 0.36
902 215 0.12
903 10 0.01
904 172 0.10
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG
CCGGCGTAGTGCTGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACATAGAGGGG
GACTCGATCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCAGACCGAGGGTTGGCAGCACATGCTGGGCTCGGGCATGTGCTGTGCCGATTTTT
CTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAACCTGACGGCGGC
Found at i:20124100 original size:26 final size:26
Alignment explanation
Indices: 20124048--20124107 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 26
20124038 GTTGACTTAG
* * *
20124048 GCATACAGAGTTGATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
20124074 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20124100 G-AT-CAGAG
1 GCATACAGAG
20124108 CATACCGAGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 22 0.79
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20126649 original size:26 final size:26
Alignment explanation
Indices: 20126612--20126664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20126602 GTTGACTTAG
* *
20126612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20126638 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20126664 G
1 G
20126665 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20127321 original size:4 final size:4
Alignment explanation
Indices: 20127312--20127346 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
20127302 CCGGGGTAGT
* *
20127312 GCCC GCCC GCCC GCCC ACCC GCCC GCCT GCCC GCC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCC
20127347 AACTCGTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.03, C:0.71, G:0.23, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:20127984 original size:883 final size:870
Alignment explanation
Indices: 20124420--20130973 Score: 7926
Period size: 883 Copynumber: 7.4 Consensus size: 870
20124410 TTTCAAATGG
* ** * *
20124420 TCACATCTACCAAGTTTGGTTCCAAAACTCCTTTCGAAAAAATTTGAAAAAATCTCGAACCGTAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAA
*
20124485 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
20124550 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGCAAAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
20124615 TGCCTAAACCTACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGACTGGAGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * **
20124680 GT----GCCCACCCGTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
260 GTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * * * *
20124741 GTCTAAGATCAGATCAGACTAAGGGTTACGGTAGCAGGATCGGTAGCACGCAAAGGGGGACCCGA
325 GTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAACCGA
** * * * * *
20124806 CCGATCCTGGGCTTGTGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTGGTTTCATGGG
390 CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
20124871 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAAGGGTTGCGGCAGC
455 TTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGTAGC
* * * **
20124935 ACAGGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTTGCC-AGGGCACCATCGTCAGAGC
519 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGA-GGCACCA---TC-GAGC
* ** * * *
20124999 ATCGCCGAAGAACCTGATCGGTGGCATTGGGGTTCCGGTGATCGGGAGGGCC-GGGGGGTGTGCA
579 ATCG--G-AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCG
* * *
20125063 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTGATATTGGCCCCCTATCCTTCATCAAACCT
641 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
20125128 CGAGAACTCACACTCCCTTGAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAA
706 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
20125193 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCA-ATTTTAGCT
771 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
20125256 GAA-TTTTTTGTGCATGCCAACAAAAATACAAGGA
836 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
20125290 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCG-TA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAA
*
20125354 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAGTCTTGCCATGAAACTTCACGTGAAGGC
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGC
* ** * *
20125419 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAAAAATATGAGGAT
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * ** *
20125484 GTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGTAGGGGT
194 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * ** ** ** *
20125549 AATGCCCGCCCGCCCGTCCGCCAACTCATTTTGTTTGTTGGCTTAGGCATACAGAGTTCATTCCC
259 AGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
20125614 AGTCTAAGAAT-GGACC-GGCCGAGGGTTACGGTAGCAAGATCAGCAGCACGCAGAGGGGGACCC
324 AGTCTAAG-ATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAACC
* * * * *** * *
20125677 GGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGTAAGCTGAGCACCCGCACGCTCGTTTTGTG
388 GACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * *
20125742 GGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
453 GGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAG
* * * * *
20125807 CACATGCTGGGCTCGAGCATGTACTGGTGCCGCATTTTTCTTCGCTGGGGCACCATC--GC--CG
518 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGAGCATCG
* * * ** ** * * *
20125868 AAGAACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGATGCCGGGGGGGCTGTACGTACATT
583 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATG
* * * *
20125933 ATGTGCGATGGGTGCTGGTACTTGGCACTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAG
647 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
20125998 CTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
712 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
**
20126063 GAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
777 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
20126127 TTTTGTGCATGCCAACAAAAATACAAGGA
842 TTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
20126156 TCACGTCTACGAAGTTTGGGGCCAAAACTCCTCCTAAAAAAATTTTAAAAAATC-CTGAACCTCA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTC-GAACCGCA
** ** * *
20126220 AAGGGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
64 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
20126285 TTAATGGACCATTGTACGAATTTAGAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGAT
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
20126350 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGGGT
194 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
20126415 AGT--------GCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
259 AGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** ** ** * *
20126472 AGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCAACAGCACGCAGAGGGGGACCCG
324 AGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAACCG
* * * * ** *
20126537 ATCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTAG
389 ACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
20126602 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAT
454 GTTGACTTAGCCATACGGAGTTCATTCCCAG--T---C-T---AAG----------ATC--AG--
* *
20126667 CAAATCGGACCGAGGGTTCCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
496 ---ATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * *
20126732 TTCACCGGGGCACCATCGTAGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTG
558 TTCACCGAGGCACCATC----GAGCAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* *
20126797 ATCGGGGGGGCC-GGGGGGTGTGCGCACAT-ATTGTGTGATGGGTGCTGGTACTTGGCCCTTAGA
616 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
20126860 TTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
680 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
20126925 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGTCACAAA
745 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * ** *
20126990 ATCTTGTACGCTTCGAGTTTTTAGCTGAATGTTTTTACGCATGCGAACAAAAATACAAGGA
810 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
20127051 TCACGTCTACCAAGTTTGGGACCAAAAATCCTTTCG-AAAAATTTTAAAAAATCCCGAACCGCAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAA
**
20127115 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
20127180 CAAGGGACCATTGTATGAATTTACACA-CCATAAAAATGGCATTGGCAAGCAGAAATATGAAGAT
130 TAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
20127244 GTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGT
194 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
*
20127309 AGTGCCCGCCCGCCCGCCCACCCGCCCGCCTGCCCGCCAACTCGTTTCATCGGTTGGGTTAGGCA
259 AGTGCCCGCCCGCCCG----CCCGCCCG-CT------C-A----TTTCATCGGTTGGCTTAGGCA
* * * *
20127374 TACGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTGCGGCAGCAGGACCGGCAGCA
308 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCA
* **
20127439 CGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
373 CGTAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* *
20127504 CACGCTCGTTTGGTGGGTTGACTTAGCCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGAC
438 CACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
* * * *
20127569 TGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGG
503 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG
* * * * *
20127634 CACCATC-A-C-T-GGAGAACTTGACCGACGACATTGGGTTTTCGACGATCGGGGGGGCCGGGGG
568 CACCATCGAGCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* * *
20127695 GGCTGTGCGAACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTC
633 GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
20127760 ATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTTCTAGTA
697 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
20127825 GCCATTAAAGTGTCTGAAATGGGGACACTATTTTT-AAATGGCCACAAAATCTTGTACACTTCGA
762 GCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
20127889 GTTTTTAGCTGAATTTTTTTGTTCAGGCCAACAAAAATACAAGGA
826 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * *
20127934 TCACAACTACCAAGTTTGGGGCCAAAAATCCATCGAAAAAATTTTAAAAAATCTCGAAGCGCAAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
** ** *
20127999 AAGTTTTGAAAATCGTGAAAAATAGAAAATAATTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
20128064 AAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
20128129 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
20128194 T----GCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAG
261 TGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * *
20128255 TCTAAGATTGGACCGGACCAAGGGTTACGGCTGCAAGATCGGCAGCACGTAGAGGGGGAACCCGA
326 TCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAA-CCGA
* * ** * * * * * *
20128320 CCAAACCCCGGCTTATGCATCCCGCCCCTCTGGTCGGTTGAGCACCCGCTCGCTCGTTTTGTGGG
390 CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG
20128385 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
454 --G---T-----T---GA---C-TT---AG-C----CATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
20128450 AGACCGGACCGAGGGTTGCGGTAGTACATGCT-GGCTCAGGCAAGTGCTGGTGTCGCATTTTTCT
494 AGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
20128514 TCACC-AGGGCACCATCACAGAAGCATCACCAGAGAACCTGATAGGCGACATTGGGGTTCCGGCG
559 TCACCGA-GGCACCAT--C-G-AGCAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
20128578 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
616 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
20128642 TGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
681 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
** *
20128707 AGGTTTATTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
746 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20128772 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTTGCATTCCAAAAAAAATGCAAGGA
811 TCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
20128833 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCTCAAACCGCAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAA
* * * *
20128898 AAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGCCT
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
20128963 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
20129028 TGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCAGGCCGACGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * *
20129093 GTGCCCACCTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
260 GTG--C-CC-GCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
20129158 CCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGCAGTAGGATCGGTAGCACATAGAGGGGG-A
321 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAA
* * * * *
20129222 CTCGACCGATCCCCGGCTTGCGCAT-CCATCTCCTTTGGTCGGCTGGGCGCCCGCACGCTCGTTC
386 C-CGACCGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * * * *
20129286 CGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATATAAGATCGGACCGGATCGAGGGTTGCG
449 CGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
* * * ** *
20129351 GTAGCACATACTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTTGCCAGAGTGCCATCATCG
514 GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GAG-G-CACCATC-
* *
20129416 GAGCATCGCCGGAGAACCTGACCGATGGCA-TGGGGTTCTGGCGATCGGGGGGGCCGTGGGGGGG
575 GAGCAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGG
* * *
20129480 TGTGTGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTTGCCCCCTATCCCTCATC
635 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
20129545 AAACCTTGAGAACTCA-ATCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
700 AAACCTTGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
20129609 CGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
764 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
*
20129674 TTCAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGA
829 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
20129715 TCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAATTTTTAAAAAATCTCGAACCGCAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA-TTTTAAAAAATCTCGAACCGCAA
* *
20129780 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
20129845 TAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
20129910 TGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * *
20129975 GTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATTGGTTGGTTTAGGCATACTGAGTTCATTCCCA
260 GTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
20130040 GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGTAGCACGTAGAGGGGG-ACCCA
325 GTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAACCGA
* *** * * *
20130104 GCCGATCCCCGCCTTGCGCATCCCGGTCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
390 -CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
20130169 GTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAAAAGAGTTCATTCCCAGTCTAAGAT
454 GTTGACTTAGCCATACGGAGTTCATTCCCAGTCT--------A-AG---------A-TC--AGAT
** *
20130234 CCAACAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
498 ----C-GGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * *
20130299 TTCACCGAGGCACCATCACCAGAGCATCGCCGGAGAACCTGAGCGGCGGCATTGGGGTTCCGGAG
558 TTCACCGAGGCACCAT---C-GAGCAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* * *
20130364 ATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATAT
616 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
** *
20130429 TGAACCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTAC
681 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * * *
20130494 AGGTTTACTACCAATAGCCGTGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
746 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
20130559 TCTTGTGCACTTTGAGTTTTTAGCAGAA-TTTTTTGGGCATGCCAACAAAAATACAAGGA
811 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
20130618 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAA
20130682 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
20130747 TAAGGGACCATTGTAT-AATTTACAAGCCAT-AAAATGG-ATTGGCACGTAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
20130809 TGCCT-AACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTATGGCCGGTGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
** ** * * * *
20130873 GTGCCCGCCCATCCATCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCA
260 GTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
20130938 GTCTAAGACCGAACCGGACCGAGGGTTGCGGCAGCA
325 GTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
20130974 CATGCTGGGC
Statistics
Matches: 4961, Mismatches: 536, Indels: 346
0.85 0.09 0.06
Matches are distributed among these distances:
857 2 0.00
858 57 0.01
859 126 0.03
861 1 0.00
862 37 0.01
863 131 0.03
864 191 0.04
865 18 0.00
866 231 0.05
867 35 0.01
868 4 0.00
869 37 0.01
870 205 0.04
873 194 0.04
874 62 0.01
875 11 0.00
877 2 0.00
878 190 0.04
879 13 0.00
880 3 0.00
881 126 0.03
882 329 0.07
883 448 0.09
884 206 0.04
885 77 0.02
886 5 0.00
887 3 0.00
888 1 0.00
889 41 0.01
890 57 0.01
891 3 0.00
892 72 0.01
893 3 0.00
894 343 0.07
895 118 0.02
896 47 0.01
897 9 0.00
898 321 0.06
899 93 0.02
900 255 0.05
901 19 0.00
902 86 0.02
903 278 0.06
904 93 0.02
905 23 0.00
906 13 0.00
907 52 0.01
908 105 0.02
909 3 0.00
912 1 0.00
913 2 0.00
914 1 0.00
916 1 0.00
918 177 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGTAGAGGGGGAACCGAC
CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGAGCATCGGAG
AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGA
Found at i:20128430 original size:26 final size:26
Alignment explanation
Indices: 20128394--20128446 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20128384 GTTGACTTAG
20128394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20128420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20128446 G
1 G
20128447 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20130627 original size:903 final size:898
Alignment explanation
Indices: 20129307--20130973 Score: 2574
Period size: 903 Copynumber: 1.8 Consensus size: 898
20129297 CTAGGCATAC
** * * ** *
20129307 AGAGTTCATTCCCAATATAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATACTGGGCTTGGG
1 AGAGTTCATTCCCAATATAAGATCCAACAGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGG
** ** * *
20129372 CATGTGCTGGTGCTGCATTTTTCTTTGCCAGAGTGCCATCATCGGAGCATCGCCGGAGAACCTGA
66 CATGTGCTGGTGCCACATTTTTCTTCACCAGAGTGCCATCACCAGAGCATCGCCGGAGAACCTGA
* * * * **
20129437 CCGATGGCATGGGGTTCTGGCGATCGGGGGGGCCGTGGGGGGGTGTGTGCACATGATGTGCGATG
131 CCGACGGCATGGGGTTCCGGAGATCGGGGGGGCCG-GAGGGGGTGTGCACACATGATGTGCGATG
*
20129502 GGTGCTGGTACCTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCAATCCCC
195 GGTGCTGGTACCTGGCCCTTATATTTGACCCCTATCCCTCATCAAACCTTGAGAACTCAATCCCC
* * * * *
20129567 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGAATTTGAGATTTTACAGGTTTACTACCAATAGCCGTGAAAGTGTCTGAAATGGGGA
* *
20129632 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTTTGTGCATG
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCAGAATTTTTTGGGCATG
20129697 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCC-AAAAAATTTTT
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAA-TTTT
* *
20129761 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTGTTGCCAT
454 AAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
20129826 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAAGGAATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-AATTTAAAAGCCAT-AAAAAGG-ATTGGC
*
20129891 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCC
580 ACGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCC
* * * * *
20129956 CGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATTGGTTGGTTTAGG
644 CGTCTCTATAGCCGGCGTAGTGCCCGCCCACCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGG
* *
20130021 CATACTGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGTAGCAAGATCGGTA
709 CATACGGAGTTCATTCCCAGTCTAAGA-CAGAACCAGACCGAGGGTTACGGCAGCAAGATCGGTA
20130085 GCACGTAGAGGGGGACCCAGCCGATCCCCGCCTTGCGCATCCCGGTCTTCTGGCCGGTTGAGCGC
773 GCACGTAGAGGGGGACCCAGCCGATCCCCGCCTTGCGCATCCCGGTCTTCTGGCCGGTTGAGCGC
20130150 CCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAAA
838 CCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAAA
* * *
20130211 AGAGTTCATTCCCAGTCTAAGATCCAACAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
1 AGAGTTCATTCCCAATATAAGATCCAACAGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGG
20130276 CATGTGCTGGTGCCACATTTTTCTTCACC-GAG-GCACCATCACCAGAGCATCGCCGGAGAACCT
66 CATGTGCTGGTGCCACATTTTTCTTCACCAGAGTG--CCATCACCAGAGCATCGCCGGAGAACCT
* *
20130339 GAGCGGCGGCATTGGGGTTCCGGAGATCGGGGGGGCC-GAGGGGGTGTGCACACATGATGTGCGA
129 GACCGACGGCA-TGGGGTTCCGGAGATCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCGA
* *
20130403 TGGGTGCTGGTACTTGGCCTTTATA-TTGAACCCCTATCCCTCATCAAACCTTGAGAACTCACA-
193 TGGGTGCTGGTACCTGGCCCTTATATTTG-ACCCCTATCCCTCATCAAACCTTGAGAACTCA-AT
20130466 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTACTACCAATAGCCGTGAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTACTACCAATAGCCGTGAAAGTGTCTGAAATG
* *
20130531 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCAGAATTTTTTGGG
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCAGAATTTTTTGGG
*
20130596 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAT
* *
20130661 TTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
451 TTTAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
20130726 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGATTGGCA
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTAAAAGCCATAAAAAGGATTGGCA
* ** *
20130791 CGTAGAAATATGAAGATGTGCCTAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCG
581 CGCAGAAATATGAAGATGTGCCTAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
* * * * * * * *
20130856 TCTCTATGGCCGGTGTAGTGCCCGCCCATCCATCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGTA
646 TCTCTATAGCCGGCGTAGTGCCCGCCCACCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCA
* * *
20130921 TACGGAGTTCATTCCCAGTCTAAGACCGAACCGGACCGAGGGTTGCGGCAGCA
711 TACGGAGTTCATTCCCAGTCTAAGACAGAACCAGACCGAGGGTTACGGCAGCA
20130974 CATGCTGGGC
Statistics
Matches: 690, Mismatches: 66, Indels: 20
0.89 0.09 0.03
Matches are distributed among these distances:
897 2 0.00
898 136 0.20
899 28 0.04
900 6 0.01
901 13 0.02
902 84 0.12
903 277 0.40
904 121 0.18
905 23 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
AGAGTTCATTCCCAATATAAGATCCAACAGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCACCAGAGTGCCATCACCAGAGCATCGCCGGAGAACCTGA
CCGACGGCATGGGGTTCCGGAGATCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACCTGGCCCTTATATTTGACCCCTATCCCTCATCAAACCTTGAGAACTCAATCCCCC
TTAAAGAGAATTTGAGATTTTACAGGTTTACTACCAATAGCCGTGAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCAGAATTTTTTGGGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAA
AAAATCCCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTAAAAGCCATAAAAAGGATTGGCACGCAG
AAATATGAAGATGTGCCTAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCT
ATAGCCGGCGTAGTGCCCGCCCACCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGACAGAACCAGACCGAGGGTTACGGCAGCAAGATCGGTAGCACGTAG
AGGGGGACCCAGCCGATCCCCGCCTTGCGCATCCCGGTCTTCTGGCCGGTTGAGCGCCCGCACGC
TCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAAA
Found at i:20131833 original size:26 final size:26
Alignment explanation
Indices: 20131797--20131846 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20131787 GACTTAGGCA
20131797 TACGGAGTTCATTCCCAATCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
*
20131823 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
20131847 ATAGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:20132665 original size:902 final size:899
Alignment explanation
Indices: 20130920--20133144 Score: 3299
Period size: 902 Copynumber: 2.5 Consensus size: 899
20130910 TGGCTTAGGT
** * *
20130920 ATACGGAGTTCATTCCCAGTCTAAGACCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGCC
* * * * ** *
20130985 TGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCAGAGCATCGCCGGAGAAC
65 TGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
* * *
20131050 CTGACCGACGGCATTGGGGTTCATGCGATCAGGGGGGCCGGGGGTATGTGCACATGATGTGCGAT
130 CTGACCGACGGCATTGGGGTTC-TGCGATCGGGGGGGCGGGGGGTGTGTGCACATGATGTGCGAT
* **
20131115 GGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTGCACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
*
20131180 CCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
20131245 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TCTTTTTGTGC
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTT-TGC
* *
20131309 ATGCCAACAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
387 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
20131374 TTAAAAAATCACGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCC
452 TTAAAAAATCACGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
* *
20131439 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
** * * *
20131504 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTCCGCAT
582 GCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
* * *
20131569 CCCGTCTCTTTGGTCGGCGTAATGCTCGGCCACCCGCCCACCCGCTCGTTTCGTCGGTAGGCTTA
647 CCCGTCTCTCTGGCCGGCGTAATGCTCCGCCACCCGCCCACCCGCTCGTTTCGTCGGTAGGCTTA
* * * *
20131634 GGCATACAGAGTTCATTCCCAGTCTACGATCGGACCAGACTGAGTGTTGCGACAGCAAGATCGGT
712 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAAGATCGGC
* * * * *
20131699 AGCATGTAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATTATGCCCCTCTGGCCGACTGAGCG
777 AGCACGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCCCATCATGCCCCTCTGGCCGACTGAGCG
* * * *
20131764 CCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-TCTAAGC
842 CCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATT-CCAAGTCTAAGC
* * * ** *
20131822 GTACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGGGTTACGATAGCACATGCTCAGCC
1 ATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGCC
* * *
20131887 TGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCTTCACCGGAGCATCGCCCGAGAAC
65 TGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
** * *
20131952 CTGACCGACGGTGTTAGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGA
130 CTGACCGACGGCATTGGGGTTCT-GCGATCGGGGGGGC-GGGGGGTGTGTGCACATGATGTGCGA
*
20132017 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTTGAGAACTCACACCC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* * *
20132082 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGAGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
20132147 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTCTTTTTTGCT
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTTTGCA
* *
20132212 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTT
388 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** *
20132277 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
453 TAAAAAATCACGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
*
20132342 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAG
20132407 CACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
583 CACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
* * * *
20132472 CCGTCTCTCTGGCCGGCGTAGTGC-CCGCCTACCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
648 CCGTCTCTCTGGCCGGCGTAATGCTCCGCC-ACCCGCCCACCCGCTCGTTTCGTCGGTAGGCTTA
* * *
20132536 GGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGGTTGTGACAGCAAGATTGG
712 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGCAAGATCGG
* * *
20132600 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGCTGAGC
776 CAGCACGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCCCATCATGCCCCTCTGGCCGACTGAGC
20132665 GCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
841 GCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
* * * * *
20132724 ATATGGAGTTCATTCTCAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCCT
* * * *
20132789 CGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCCTCACCGAAGCATCGCCGGAGAAC
66 -GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
* ** * *
20132854 CTAACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGAGTGGTGTGTGCACATTATGT
130 CTGACCGACGGCATTGGGGTT-CTGCGATCGGGGGGG-C--GGG-G-GGTGTGTGCACATGATGT
** * * *
20132919 GCGATGGGTGCTTTTACTTGGCCCTTATATTGACCTCTTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCA
*
20132984 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20133049 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTTAATGT-TTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TCTTT
*
20133113 TGTGCATGCCAACAAAAATACAAGGATCACAT
382 TTTGCATGCCAACAAAAATACAAGGATCACAT
20133145 GAAATGAGCC
Statistics
Matches: 1183, Mismatches: 126, Indels: 23
0.89 0.09 0.02
Matches are distributed among these distances:
901 13 0.01
902 882 0.75
903 60 0.05
904 3 0.00
905 1 0.00
906 48 0.04
907 175 0.15
908 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
ATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCCT
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACC
TGACCGACGGCATTGGGGTTCTGCGATCGGGGGGGCGGGGGGTGTGTGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTTTGCATGC
CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCACGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAC
ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
TCTCTCTGGCCGGCGTAATGCTCCGCCACCCGCCCACCCGCTCGTTTCGTCGGTAGGCTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAGCA
CGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCCCATCATGCCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
Found at i:20132726 original size:26 final size:26
Alignment explanation
Indices: 20132696--20132748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20132686 GTTGACTTAG
20132696 GCATACGGAGTTCATTC-CAAGTCTAA
1 GCATACGGAGTTCATTCTCAA-TCTAA
*
20132722 GCATATGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCTCAATCTAA
20132748 G
1 G
20132749 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAATCTAA
Found at i:20134162 original size:26 final size:26
Alignment explanation
Indices: 20134126--20134178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20134116 GTTGACTTAG
* * *
20134126 GCATACGGAGTTCTTTTCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20134152 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20134178 G
1 G
20134179 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20135060 original size:26 final size:26
Alignment explanation
Indices: 20135008--20135060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20134998 GTTGACTTAG
*
20135008 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20135034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20135060 G
1 G
20135061 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20135849 original size:26 final size:26
Alignment explanation
Indices: 20135813--20135862 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20135803 GACTTAGGCA
20135813 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
20135839 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20135863 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:20137559 original size:26 final size:26
Alignment explanation
Indices: 20137522--20137574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20137512 GTTGACTTAG
* *
20137522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20137548 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20137574 G
1 G
20137575 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20138455 original size:26 final size:26
Alignment explanation
Indices: 20138425--20138477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20138415 GTTGACTTAG
* *
20138425 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20138451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20138477 G
1 G
20138478 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20138886 original size:903 final size:902
Alignment explanation
Indices: 20136645--20143982 Score: 9255
Period size: 903 Copynumber: 8.3 Consensus size: 902
20136635 GTTAACTTAG
* * * * * *
20136645 GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * ** **
20136710 CTTGGCCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCAACAAAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTC-GGAG
20136774 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGCGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
20136838 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
20136903 ACACCCCCTTAGAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCGTTAAACTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20136968 AT-AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTCGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
20137032 TGTACATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGTGCCAAAAA-T-CGTTCTGA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG-GCCAAAAACTCCTTTC-GA
* * * *
20137095 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCA
452 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
20137160 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
20137225 GGAATTGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
20137290 TGCGCATCCCGTCCCTTTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-CCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
20137355 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCCA-ACTGAGGGTTGCGGTAGCA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGTGATAGTA
* * * * *
20137419 GGATCGATAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGTCG
775 GGATCGACAGCAC-CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCG
* *
20137484 GCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20137548 GCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGATCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * * **
20137613 CTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
20137678 ACTTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCC-AGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
20137742 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20137806 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TAGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G-AA
*
20137870 ATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
324 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
20137935 TTGTGCATGCCAAAAAAAATACAAGGATGATGTCTACCAAGTTTGGGGCAAAAATTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAACTCCTTTCGAA
** * * *
20138000 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACAAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
20138065 CTTGCCATGAAACTTCACGTGAAGGCTTGAGGGCCCATTGTATGAATTTAAAAGGCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
20138130 GTAGTGACATGTAGAAATATGAAGATTTGCCTAAACCTACCTACCACCTTATCGATCCACGGCTT
583 GAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
20138195 ACGCATGCCGTTTCTCTGGTCGGCGTAGTGCCCGCCCTCCCGTCCGCCCGCTCGTTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *** * * ** *
20138260 AGCTTAGGCATATTCAGTTCATTCCCAGTCTAAGAACAGACCAGACCGAGGGCTACGACAGTAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTAGG
* * * *
20138325 ATCGACAGCATCCATAGGGGGACCCGGCCGATCCCCGGCTTGCTCATCCCACCCGTC-GGCCGGC
777 ATCGACAGCA-CCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGGC
* * *
20138389 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCTAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20138451 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * ** * **
20138516 CTCGAGCATGTGCTGGTGACGTATTTTTCTTCCCCGAGGCACCATCGCCGGATTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
20138581 ACCTGACC-AGCGGCATTGGGATTCCGGCGATCAGGGGGGCCGGGAGGGGTGTGCGCACATGATG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATG
* *
20138645 TGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
20138710 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * ** *
20138774 ATTGGGACATTTTTTTCAAAAGGTCACAAAATCTTGTGGACTTCGAGTTTTTGGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** ** * * *
20138839 TATGCATGCCAACAAAAATGGAAGGATCATGTCTACTGAGCTTGGGGCCAAAAA-TCCATCCGAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTTGGGCCAAAAACTCCTTTCGAA
* ** *
20138903 AAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACAAGTCG
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCG
20138967 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
20139032 GGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
20139097 TACGTAACCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGT-CTGTCCACCCGCTCGTTTCATCGG
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-TCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** *
20139161 TTGGCTTAGGCATACTGG-GTTAATTACCAGTCTAAGATCAGACCGGAATGAGGGTTGTGGTAGT
710 TTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGT
** ** * *
20139225 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTATGCATCCTGCCACTCTGGCT
774 AGGATCGACAGCAC-CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCC
*
20139290 GGCTGAGCGCCCGCACGCTC-TTATCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
838 GGCTGAGCGCCCGCACGCTCGTT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20139354 A
902 A
* *
20139355 G-AT--GG-G---------A--C-----T-GGACC-G----AGGGTTTCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
** *
20139394 CTCGGGCATGTGCTGGTGCTACATTTTTC-T--TC---G--CCA--G--GGCACCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGG-AGCATCGTCGGAG
*
20139447 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
20139511 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
20139576 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20139639 TAGGGA-ATCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
325 TGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
20139703 TATGCATGCCAACAAAAATACAAGGATCACT-TTTACCAAGTTTGGGTCCAAATA-TCCTTT-TA
389 TGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGG-CCAAAAACTCCTTTCGA
* *
20139765 AAAAATTTTTAAAAAATCTCGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
20139830 GTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
20139895 TGGAAGTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
581 TGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
20139960 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G---CCCGCCCGCCCGCTCG-TTCTGTCGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTC-GTCGG
* ** * * *
20140017 TTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGAT-TG-CAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTA
* * * * *
20140079 -G--C-AC-G---TAGAGGGGGACCCGGCTGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCAG
775 GGATCGACAGCACCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGG
* * * * * *
20140136 CTGGGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** ** * * *
20140199 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATGGGACTGAGGGTTTCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* *
20140263 CTTGGGCATGTGCTGGAT-CCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGG-TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** ** * * *
20140327 AACCTGACTGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTATGCGTACATAATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
20140392 GCGGTGGGTACTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAGCCGT-GAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
20140456 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20140521 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * * *
20140586 TGTGCATGCCAACAAAAATATAAAGATCACATCTACCAGGTTTGTGCCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAACTCCTTTCGAAA
* * * * *
20140651 AAATTTT-AAAAATCCCCAATCGCAAAAAGTTTCGAAAATCCTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
20140715 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
20140780 AATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 AATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
20140845 CGCATCCCGTCTCTATGGCCGGTGTAGTGCCCG---CCCGCCCGCCTGCTTGTTTCGTCGGTTGG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
20140907 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GAACCGAGGGTTGCGATAGCAGGA
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGATAGTAGGA
* * * * * *
20140971 TCGACAGCATGCAGAGGGGGACTCGGCCGATCCTCGGCTTGCGCATCCCGCCCCGCTGGCCGGTT
778 TCGACAGCA-CCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGGCT
* * * **
20141036 GAGCGCCCGTACACTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20141097 GCATACGGAGTTCATTCCCAGCCTAATATCGGATCAGACCAAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * *
20141162 CTCGGGCATGTGCTGGTGCCACATTTTTC-TCTGTCGAGGCACCAT---C---G---C--CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
20141215 AACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCC-GGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
20141278 CCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGCGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20141343 CACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20141408 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20141473 GTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG-TTGGGCCCAAAACTCCTTTTG-AAA
390 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAACTCCTTTCGAAAA
** *
20141536 AATTTTAAAAAATCTTGAACCGCAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGA---GTC
455 AATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
20141598 TTACCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA--G
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
20141661 ----GGC------AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
584 AATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
20141716 CGCATCCCGTCTCTCTGGCCGATGTAGT--CC-CCGCCCGCCCG-CCGCTCATTTCGTCAGTTGG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
20141777 CTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGAAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTAGGAT
* ** * * *
20141842 CGGCAGCAAGTAGATGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCGGCTG
779 CGACAGC-ACCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGGCTG
* * * **
20141907 AGCGCCCGTACACTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20141967 GCATACGGAGTTCATTCCCAGCCTAATATCGGATCAGA-CAAGGGTTGCTGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
20142031 CTCGGGCAAGTGCTGGTACCACATTTTTCTCCGTCGAGGCACCAT---C---G---C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
20142085 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCACACCA-GATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCA-CATGATGT
* * * *
20142148 CCGATGGGTTCTGGTTCTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTC-ATGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
*
20142212 ACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20142277 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
20142342 TGTGCCA-GACAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTTGAA
389 TGTG-CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAACTCCTTTCGAA
** * *
20142406 AAAATTTTAAAAAATCTTGAACCGCAAAAAATTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
20142471 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20142536 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
20142601 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG---CCCGCCCG-TCGCTTGTTTCGTCGGTT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
20142662 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAGCAGACCGGACCGAGGGTTGTGACAGAAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTAGG
* ** ** * * * *
20142727 ATTGGTAGCAAGTAGATGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC
777 ATCGACAGC-ACCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGGC
* * *
20142792 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20142854 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * * * * ** * *
20142919 CTCGGGCATTTGCTGGTGCCACATTTTTCTTC-CCTGGGGCTCCATTGTTGGACCATCGTCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* *
20142983 AACCTGACCGGCGGCATTGTGGTTCC-ACCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
20143047 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
20143112 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20143177 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGATGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
20143242 TGTGCATGCCAATAAAAATAAAAGGATCACT-TCTACCAAGTTTGGAG-CTAATTCT-CTTTCTG
389 TGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGG-GCCAAAAACTCCTTTC-G
** * * *
20143304 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAAATTCAAAAATCCTGACAAATAGAAAATGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * ** * * *
20143369 GTATTGCCTTGAAACTTCGTGGGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCAATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
20143434 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGC
581 TGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
20143499 TTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCT---GCCCGCCTGCTCGTTTCGTCGGT
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
20143561 TGGCTTAGCCATACGGAGTTCATTCCCAGGCTAAGATCAGACCAGAGCAAGGGTTGTGGTAGTCG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTAG
* * * * ** * *
20143626 GATCAACAACACGCAGAGGGGGAGCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGG
776 GATCGACAGCAC-CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGG
* * * * *
20143691 TTGAGCGCCCACACGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20143754 GCATACGGAGTTCATTCCCAGTGTAAGATCGGA-TAGGATCGAGGGTTGCAGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCAAGGGTTGCGGTAGCACATGCTGG
* * * * * *
20143818 GATTGGCCATGTGCTGGTGCCGCATTTTT-TCTCATCGGGGCTCCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCT-TCATCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
20143882 GAACCTGACCGACGGCATTGGGGTTCC-AGCGATC-GGGGGGCCGAGGGGGGTCTACGCACATCA
129 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGA
20143945 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
20143983 TTTTTTATGC
Statistics
Matches: 5691, Mismatches: 580, Indels: 331
0.86 0.09 0.05
Matches are distributed among these distances:
844 98 0.02
845 4 0.00
847 2 0.00
848 2 0.00
849 2 0.00
850 1 0.00
852 1 0.00
853 4 0.00
854 2 0.00
855 8 0.00
856 58 0.01
858 1 0.00
860 1 0.00
863 13 0.00
864 308 0.05
865 144 0.03
866 4 0.00
867 48 0.01
868 2 0.00
869 153 0.03
870 484 0.09
871 112 0.02
872 64 0.01
875 65 0.01
877 8 0.00
878 45 0.01
880 49 0.01
881 84 0.01
882 267 0.05
883 176 0.03
884 17 0.00
885 33 0.01
886 332 0.06
887 322 0.06
888 92 0.02
889 6 0.00
890 2 0.00
891 1 0.00
892 1 0.00
893 3 0.00
894 1 0.00
896 1 0.00
897 1 0.00
898 117 0.02
899 325 0.06
900 627 0.11
901 72 0.01
902 77 0.01
903 788 0.14
904 515 0.09
905 133 0.02
906 15 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGTAGGATCG
ACAGCACCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20140209 original size:26 final size:25
Alignment explanation
Indices: 20140173--20140224 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20140163 GTTGACTTAG
*
20140173 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
*
20140199 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAATCTAA
20140224 G
1 G
20140225 ATCGGATGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:20141122 original size:26 final size:26
Alignment explanation
Indices: 20141071--20141122 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20141061 GTTGACTTAG
* *
20141071 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
*
20141097 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
20141123 TATCGGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGCCTAA
Found at i:20141992 original size:26 final size:26
Alignment explanation
Indices: 20141941--20141992 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20141931 GTTGACTTAG
* *
20141941 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
*
20141967 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
20141993 TATCGGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGCCTAA
Found at i:20142463 original size:27 final size:27
Alignment explanation
Indices: 20142404--20142456 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
20142394 ACTCCTTTTG
***
20142404 AAAAAATTTTAAAAAATCTTGAACCGC
1 AAAAAATTTTAAAAAATCTTGAAAAAC
*
20142431 AAAAAATTTTCAAAAATCTTGAAAAA
1 AAAAAATTTTAAAAAATCTTGAAAAA
20142457 TAGAAAACGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCTTGAAAAAC
Found at i:20142858 original size:26 final size:26
Alignment explanation
Indices: 20142828--20142880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20142818 GTTGACTTAG
20142828 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
20142854 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20142880 G
1 G
20142881 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20143556 original size:900 final size:896
Alignment explanation
Indices: 20139326--20143982 Score: 6011
Period size: 900 Copynumber: 5.3 Consensus size: 896
20139316 TGGGTTGACT
* * *
20139326 TAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGA-CTGGACCGAGGGTTTCGATAGCACATGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGTAGCACATGC
** *
20139390 TGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTT-C----G--CCA--G-GGCACCATCGTCGG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCGG-ACCATCGCCGG
*
20139445 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGAT
129 AGAACCTGACCGACGGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
20139509 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
20139574 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
20139637 AATAGGGA-ATCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
20139701 TTTATGCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGGTCCAAATA-TCCTTT-T
387 TTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGG-CCAAA-ACT-CTTTCT
* *
20139764 -AAAAAATTTTTAAAAAATCTCGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAG
449 GAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
20139828 TCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* ** *
20139893 AATGGAAGTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACG
578 AATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
20139958 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCTCG-TTCTGTCGGT
643 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTC-GTCGGT
* ** * * * *
20140018 TAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGAT-TG-CAGT--
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAG
* * * *
20140078 -A--G-CA-C--GTAGAGGGGGACCCGGCTGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCAG
772 GATCGACAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
20140136 CTGGGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATC
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
20140196 TAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATGGGACTGAGGGTTTCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
* * * * * *
20140260 AGGCTTGGGCATGTGCTGGAT-CCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCG
66 GGGCTCGGGCATGTGCTGG-TGCCGCATTTTTCTTCCT-GGGGCACCATC-GCGGACCATCGCCG
* ** ** * * *
20140324 GAGAACCTGACTGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTATGCGTACATAA
128 GAGAACCTGACCGACGGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * *
20140389 TGTGCGGTGGGTACTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAGCCGT-GAGAA
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAA
20140453 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
20140518 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
20140583 TTTTGTGCATGCCAACAAAAATATAAAGATCACATCTACCAGGTTTGTGCCCAAAACTCCTTTC-
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG-GGCCAAAACT-CTTTCT
* * * *
20140647 GAAAAAATTTT-AAAAATCCCCAATCGCAAAAAGTTTCGAAAATCCTGAAAAATAGAAAACGAGT
449 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
20140711 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
20140776 ATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
20140841 CTTGCGCATCCCGTCTCTATGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTG
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
20140906 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGATAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGGA
* * * * *
20140971 TCGACAGCATGCAGAGGGGGACTCGGCCGATCCTCGGCTTGCGCATCCCGCCCCGCTGGCCGGTT
774 TCGACAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
20141036 GAGCGCCCGTACACTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTC
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
20141094 TAAGCATACGGAGTTCATTCCCAGCCTAATATCGGATCAGACCAAGGGTTGCTGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
* *
20141159 GGGCTCGGGCATGTGCTGGTGCCACATTTTTC-T-CT---G-----TCGAGGCACCATCGCCGGA
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCGG-ACCATCGCCGGA
* *
20141214 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCC-GGGGGGTGTGCACACATGATG
130 GAACCTGACCGACGGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
20141277 TCCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGCGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
20141342 ACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20141407 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
20141472 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG-TTGGGCCCAAAACTCCTTT-TG-A
389 TGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGG-CCAAAACT-CTTTCTGAA
** *
20141534 AAAATTTTAAAAAATCTTGAACCGCAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGA---G
452 AAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
20141596 TCTTACCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA-
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
20141660 -G----GGC------AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCT
581 GGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * *
20141714 TGCGCATCCCGTCTCTCTGGCCGATGTAGTCCCCGCCCGCCCG-CCGCTCATTTCGTCAGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
20141778 TTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGAAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGGATC
* * * *
20141843 GGCAGCAAGTAGATGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCGGCTGA
776 GACAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * **
20141908 GCGCCCGTACACTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTC
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
20141964 TAAGCATACGGAGTTCATTCCCAGCCTAATATCGGATCAGA-CAAGGGTTGCTGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
* * * *
20142028 GGGCTCGGGCAAGTGCTGGTACCACATTTTTC-TCC----G-----TCGAGGCACCATCGCCGGA
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCGG-ACCATCGCCGGA
* *
20142083 GAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCACACCA-GAT
130 GAACCTGACCGACGGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCA-CATGAT
* * * *
20142146 GTCCGATGGGTTCTGGTTCTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTC-ATGAAC
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAAC
*
20142210 TCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
20142275 AAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
20142340 TTTGTGCCA-GACAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTT-T
387 TTTGTG-CATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGG-CCAAAACT-CTTTCT
** * *
20142403 GAAAAAATTTTAAAAAATCTTGAACCGCAAAAAATTTTCAAAAATCTTGAAAAATAGAAAACGAG
449 GAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
20142468 TCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
20142533 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
578 AATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
20142598 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCGCTTGTTTCGTCGGTT
643 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
20142662 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAGCAGACCGGACCGAGGGTTGTGACAGAAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGG
* ** * * * *
20142727 ATTGGTAGCAAGTAGATGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC
773 ATCGACAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
20142792 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
20142851 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
* * * * * * * *
20142916 AGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCCCTGGGGCTCCATTGTTGGACCATCGTCGA
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-CCTGGGGCACCATCG-CGGACCATCGCCGG
* *
20142981 AGAACCTGACCGGCGGCATTGTGGTTCCACCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
129 AGAACCTGACCGACGGCATTGGGGTTCCA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
20143046 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
20143111 CACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
20143176 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGATGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
20143241 TTGTGCATGCCAATAAAAATAAAAGGATCACTTCTACCAAGTTTGGAGCTAATTCTCTTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGG-GCCAAAACTCTTTCTGAA
** * * *
20143306 AAAATTTTAAAAAATCCCGAACCGCAAAAAAATTCAAAAATCCTGACAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * ** * * *
20143371 ATTGCCTTGAAACTTCGTGGGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCAATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20143436 GCATTGGCATGCAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCACGGCTT
582 GAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20143501 GCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
20143566 TAGCCATACGGAGTTCATTCCCAGGCTAAGATCAGACCAGAGCAAGGGTTGTGGTAGTCGGATCA
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGGATCG
* * * * ** * * *
20143631 ACAACACGCAGAGGGGGAGCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAG
777 ACAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
20143696 CGCCCACACGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
20143751 CAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATAGGATCGAGGGTTGCAGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
* * * * * * *
20143816 AGGATTGGCCATGTGCTGGTGCCGCATTTTT-TCTCATCGGGGCTCCATCGTCGGAGCATCGCCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT-TCCT-GGGGCACCATCG-CGGACCATCGCCG
* * *
20143880 GAGAACCTGACCGACGGCATTGGGGTTCCAGCGATC-GGGGGGCCGAGGGGGGTCTACGCACATC
128 GAGAACCTGACCGACGGCATTGGGGTTCCA-CGATCGGGGGGGCCG-GGGGGGTGTGCGCACATG
20143944 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
20143983 TTTTTTATGC
Statistics
Matches: 3379, Mismatches: 314, Indels: 158
0.88 0.08 0.04
Matches are distributed among these distances:
869 174 0.05
870 501 0.15
871 114 0.03
872 61 0.02
875 64 0.02
877 7 0.00
880 49 0.01
881 84 0.02
882 263 0.08
883 177 0.05
884 19 0.01
885 32 0.01
886 328 0.10
887 327 0.10
888 90 0.03
889 3 0.00
890 2 0.00
892 1 0.00
893 1 0.00
894 2 0.00
895 2 0.00
896 1 0.00
897 1 0.00
898 117 0.03
899 326 0.10
900 631 0.19
901 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (896 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCGGACCATCGCCGGAG
AACCTGACCGACGGCATTGGGGTTCCACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGCCAAAACTCTTTCTGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAGTAGGATCGACAG
CAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:20145369 original size:26 final size:26
Alignment explanation
Indices: 20145333--20145385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20145323 GTTGACTTAG
20145333 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
20145359 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20145385 G
1 G
20145386 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20147179 original size:25 final size:26
Alignment explanation
Indices: 20147128--20147179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20147118 GCTGACTTAG
*
20147128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20147154 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20147179 G
1 G
20147180 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20148965 original size:26 final size:26
Alignment explanation
Indices: 20148935--20149013 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
20148925 CTTGACTTAG
20148935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20148961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20148987 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20149013 G
1 G
20149014 ATCGGACAGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20149401 original size:921 final size:912
Alignment explanation
Indices: 20145333--20151478 Score: 6883
Period size: 913 Copynumber: 6.8 Consensus size: 912
20145323 GTTGACTTAG
*
20145333 GCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGA
* * * *
20145397 CCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCAAT-TGCTGGTGCTGCATTTTTCTTCGTCGG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC-ATGTGCTGGTCCCGCATTTTTCTTCGTCGA
* * * * * * *
20145461 GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGACGGTATTGGGGTTTCGACGATCGGGGG
129 GGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGG
* * *
20145526 GGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGAACTTGGCCCTTATATTGGCCCCC
194 GG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
20145591 TATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGC
258 TATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
20145656 TGCCAGTAGCCGTTAAAGTGTATAAAATGGGGACACTTTTTTCAAATGGT-AGCAAAATCTTGTG
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTA
* ** * ** ** * *
20145720 CACTTCGAGTTTTTTGTTGAATTTTTTTGTAAATGCCAGCAAAAATACAAGGATCATGTCTACCA
387 CACTTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CA
* ** * * * * * *
20145785 CA-TTAAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTAACTGCAAAAA-TTTCAAA
451 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
20145848 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
516 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
20145913 TGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
581 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
20145978 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTAGCCGCCCG
646 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-
* * *
20146043 CCTACCTGTCTGCCAGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAATC
704 CC-A-C---C-GCC-GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** * * *
20146107 TAAGATCGGACCGGACC-A--G-T-A-GCAG---GATCGGCAGCACACAAAGGGGGACCCGATCG
762 TAAGAT-GCATCAGACCGAGGGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGTCG
* * *
20146163 ATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGGAGCGCCCGCCAC-ATCGTTTCATTGGT
826 ATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACT-GAGCGCCCG-CACGCT-GTTTCA-TGGT
20146227 TGACTTAGGCATAC-----T---G---
886 TGACTTAGGCATACGGAGTTACAGTTA
* * * * * * *
20146243 G---A--G-TTTCATTCCCAGTATAAGCCATATGGAGTTCATTCCCAGTCTATTGATCAGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-CATACGGAGTTCATTCCCAGTCTA-AGATCGGACAGG
** * * * * * *
20146302 ATTGAGGATTGCGG-AGCACATGGCTGGGCTCGGGCATGTGCTGGTGCCGTACTTTTCTT-ATCG
64 ACCGAGGGTTACGGCAGCACAT-GCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCG
* * * * * *
20146365 AGGCACCATC-ACAGAGCCATCACCAGA-AACCTGACCGACCGACATTGGGGTTCCGGCGGATCG
128 AGGCACCATCGTCGGAG-CATCGCCAGAGAACCTGACCGA-AGGCATTGGGGTTCCGAC-GATCG
* * * *
20146428 GACGGTGCCCGGGAGGTGTGTGCGCACATGATTGTGTGATGGGTGCTGGTACTTGGCCCTTATAG
190 G--GGGGGCCGGG-GG-GTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* ** *
20146493 TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCGTA-CCCCTTAAA-ACGCATTTGAGACTTTA
250 TGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTA
*
20146555 CGTAGG-TTGCTGTCAGGTAGCCATTAAAGTGTCTTGAAAATGGGGACAC-TTTTTCAAATGGTC
314 C--AGGTTTGCTGCCA-GTAGCCATTAAAGTGTC-TG-AAATGGGGACACTTTTTTCAAATGGT-
* * * * ** *
20146618 CACAAAAACTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAG
373 CACAAAATCTTGTACACTTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
20146683 GATCACGTCTAC-ACGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTTAAAAATCTCGAACCGT
438 GATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
20146746 AAAAAGTTTCGAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
503 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* * *
20146811 CTTAAGGGACCATTGTATGCATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGA
568 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * **
20146875 TGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGCACATCCTATCTCTCTGGCCGGCG
633 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
20146940 TAGTGCCCGCACGCCCGCCCTCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
698 TAGTGCCCAC-CG-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** * *
20147005 CT-A-A-G-ATCAGACTGGACCGG-T-A-GTAGTTAG--C-ACA-CA---A-AGGGGGACCCGGC
761 CTAAGATGCATCAGAC-CGA-GGGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGT
* * * *
20147055 CGATCCCCGGCTTGCGCATCCCGCCCATCTAGCCGACTGAGCGCTCGCAAGCTCGTTTCATGG--
824 CGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT-GTTTCATGGTT
20147118 G-C-T--G---AC----TT--AG---
887 GACTTAGGCATACGGAGTTACAGTTA
*
20147128 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCGGACCA-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGA
* * * * * ** *
20147191 CTGAGGGTTACGGCAGCACATCCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCGAG
* ** * *
20147256 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGG
* *
20147321 GCCGGGGGGTGTGCCCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
20147386 TCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
260 TCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
20147450 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * ** *
20147515 CTTCGAGTTTTGAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
389 CTTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAG
* * * *
20147580 TTTAGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
454 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
20147645 CGTGAAAAATAGAAAACGAGTCATCTTCCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
20147710 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
20147775 TACCACCCTCTCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCT
649 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCA-CCG---
* * ** * * * *
20147840 ACCCACCCGCTCATTTCATCAGTTAGCTTAGGCATACAGAGTTCATTCCCAATCTAAGAT-CAGA
710 --CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGC--A
* * * * ** ** * *
20147904 CCAGACC-AAGGTTGTGGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGGTCGATCCCTGGCT
771 TCAGACCGAGGGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGTCGATCCC-GGCT
* * * *
20147968 TGCGTATCCCGCCCCTCTAGCCCG-CTGAGCGCCCGTACGCTCGTTTCGTGGTTTGAC-T-----
835 TGCGCATCCCGCCCCTCT-GGCCGACTGAGCGCCCGCACGCT-GTTTCATGG-TTGACTTAGGCA
20148026 TA-GG-G---C-----
897 TACGGAGTTACAGTTA
* * * *
20148032 -CATACAGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAAATCTAAGATCGGAGACCG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATC-G-GACAG
* * * *
20148096 AACCCGAGGGTTACGGCACGCCACATCCTGGGCTCGGGCATGTGCAGGAGCCCGCATTTTT-TCT
63 GA-CCGAGGGTTACGGCA-G-CACATGCTGGGCTCGGGCATGTGCTGG-TCCCGCATTTTTCT-T
* * *
20148160 CATCGAGGCACCATCG-CTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCG
123 CGTCGAGGCACCATCGTC-GGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGA-CG
** *
20148223 AT-TAGGGGGCCGGGGGGGTTTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
186 ATCGGGGGGGCC-GGGGGG--TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
20148287 ATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
248 ATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
20148352 TCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
313 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * ** *
20148417 AATATTGTACGCTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
378 AATCTTGTACACTTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * ** *
20148482 CGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAGTCTTGAACAGTAAAAA
443 CGTCTACAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
20148547 GTTTCAAAAATCGTGAAAAATTGAAAACGA-TACGTCTTGCCATTAAACTTCACGTGAAGGCTTA
508 GTTTCAAAAATCATGAAAAATAGAAAACGAGT-CATCTTGCCATGAAACTTCACGTGAAGGCTTA
**
20148611 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
572 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
20148676 CCTAAACCCACCAACCACCCTATCGATTCACGGCTTGCGCATCCAGTCTCTCTGGCCGGTGTAGT
637 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* *
20148741 GACCA-C-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
702 GCCCACCGCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
* * * * *
20148804 ATGCATCAGACCGAGGGTTGCGGTAGCAAGATCGACAGCACGTAAAGGGGGACCCGGTTGATCCC
766 ATGCATCAGACCGAGGGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGTCGATCCC
* *
20148869 TGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGCTTGACTTA
831 -GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TGTTTCATGG-TTGACTTA
20148934 GGCATACGGAGTTCATTCCCAGTCTAA
893 GGCATACGGAGTT-A----CAGT-T-A
20148961 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGAC
* ** *
20149026 CGAGGGTTGCGATAGCACAAGCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCG-GA
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCGAG-
* * * *
20149090 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAAGGCACTGGAGTTCCGACGATC-GGGGG
130 GCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGG
* *
20149154 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTTGCCCCCT
195 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
20149219 ATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
20149284 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
20149349 CTTCGAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCACA
389 CTTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAA
*
20149414 -TTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
453 GTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
20149477 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
517 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
20149542 GTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCA-CAATATGAAGATGTGCCTAAACCCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
20149606 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGT
647 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCA-CCG-
* * *
20149671 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGAT-CACACA
710 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGCA-TCA
* * * *
20149735 TGACCCAGGGTTGAGGCAGCAAGATCGGCAGCATGTAGAGTGGGACCTGGTCGATCCCCGG-TTG
774 -GACCGAGGGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGTCGAT-CCCGGCTTG
* * *** *
20149799 CGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCAATCGTGG--G--TT--G---AC--
837 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTGTTTCATGGTTGACTTAGGCATACGG
20149853 --TT--AG---
902 AGTTACAGTTA
* * *
20149857 GCATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCAATCCCAGTCTAAGATCGGATCA-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGA
* *
20149921 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGAG
65 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCGAG
* * * * *
20149986 GCAGCATCGACGGAGCATCGCCAGAGAACCTGATCGGCAGG-ATTGGGGTTCCGGCGATCGGGGG
130 GCACCATCGTCGGAGCATCGCCAGAGAACCTGA-CCGAAGGCATTGGGGTTCCGACGATCGGGGG
* *
20150050 GGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT
194 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
20150115 ATCCCTTATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGC
259 ATCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
20150179 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * ** * * *
20150244 GCTTTAAGTTTTAGGTTCAATTTTTTTTTTGCATGTCAACAAAAATACAAGGATCACGTCTACCA
388 ACTTCAAGTTTTAAGCT-GACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAA
** * *
20150309 AGTTTGGGGCCAAAAATCCTTCCAAAAAAAGTTTAAAAAATCCCGAACCGCAAAACA-TTTCAAA
452 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAA
* * * *
20150373 AATCATAAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTAAAGGCACCAT
516 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** ** *
20150438 TGTATGAGGTTACAAGTGATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCC
581 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
20150503 ACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCA
646 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCA
*
20150568 CTCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCG
707 C-CG-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-G
* * * * ** * *
20150633 GATCAGA-CGAGGGGTTGTGGCAGTAGGATC-AGTGGCACGCAGAGGGGGACCTGGCCGATTCCC
769 CATCAGACCGA-GGGTTGAGGCAGCAAGATCGA-CAGCACGTAGAGGGGGACCTGGTCGA-TCCC
* * *
20150696 GACTTGCGCATCCCGCCCCTTTGGCC-AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
831 GGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCT-GTTTCAT-GGTTGACTTA
20150760 GGCATAC--AG----AG-T-
893 GGCATACGGAGTTACAGTTA
* * * * * *
20150772 ---T-----G---ATTCCCAGTTTAAGCATACGTAGTTCATACCCAGTCCAAGATCGGACCGTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGAC
* ** * * *
20150826 CGATGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-AATTTTTTCTTCGTCGGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGCA-TTTTTCTTCGTCGAG
* * ** *
20150890 GCACCATCGTTGGAGCATCGCCAGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGG
* * *
20150955 GCCAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTA
195 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
20151020 TCCCTCA-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20151084 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
20151149 TACGAGTTTTTAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
390 TTCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGT
* *
20151214 TTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTAAAAAAT
455 TTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAAT
* * *
20151278 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
20151343 ATGAATTTACAAGCCATAAAAATGGCATAGGCATGCAGAAATATGAAGATGTGCCCAAACCCACC
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
20151408 TACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCTGCCC
649 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACC-G-CC
20151473 GCCCGC
712 GCCCGC
20151479 CCGCCGCCCG
Statistics
Matches: 4550, Mismatches: 492, Indels: 400
0.84 0.09 0.07
Matches are distributed among these distances:
881 83 0.02
882 34 0.01
883 173 0.04
884 149 0.03
885 29 0.01
886 10 0.00
888 103 0.02
889 54 0.01
890 32 0.01
891 18 0.00
892 5 0.00
893 26 0.01
894 47 0.01
895 5 0.00
896 355 0.08
897 209 0.05
898 136 0.03
899 17 0.00
900 5 0.00
901 66 0.01
902 371 0.08
903 213 0.05
904 252 0.06
905 142 0.03
906 148 0.03
907 14 0.00
908 44 0.01
909 55 0.01
910 206 0.05
911 195 0.04
912 82 0.02
913 466 0.10
914 5 0.00
915 1 0.00
917 2 0.00
919 1 0.00
920 80 0.02
921 380 0.08
922 15 0.00
923 121 0.03
924 127 0.03
925 4 0.00
926 12 0.00
927 5 0.00
928 1 0.00
929 10 0.00
930 42 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (912 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGAC
CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCCGCATTTTTCTTCGTCGAGG
CACCATCGTCGGAGCATCGCCAGAGAACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCAAGTTTTAAGCTGACCTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTT
TGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCGCCGCCC
GCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGCATCAGACCGAG
GGTTGAGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGGTCGATCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGACTGAGCGCCCGCACGCTGTTTCATGGTTGACTTAGGCATACGGAGTTACAGT
TA
Done.