Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 112 of 117
Found at i:20151730 original size:135 final size:135
Alignment explanation
Indices: 20151486--20151751 Score: 360
Period size: 135 Copynumber: 2.0 Consensus size: 135
20151476 CGCCCGCCGC
* *
20151486 CCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACC
1 CCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGAAC
* * * * *
20151551 AAGGGTTGCAATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACTGATCTC-TGGCTTGCGCA
66 AAGGGTTGCAACAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATC-CGCGGCTTGCGCA
20151615 TCCCGT
130 TCCCGT
* * *
20151621 CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATC-GAACC-GAA
1 CCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCTG-A
* *
20151684 ACAAGGGTTGCGACAGCAGGATCAGCAGCACGCA-AGGGGGTGCCCGACCGATCCGCGGCTTGCG
64 ACAAGGGTTGCAACAGCAGGATCAGCAGCACGCAGAGGGGG-ACCCGACCGATCCGCGGCTTGCG
20151748 CATC
128 CATC
20151752 TCGCCCCTCT
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
134 9 0.08
135 106 0.92
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (135 bp):
CCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGAAC
AAGGGTTGCAACAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCGCGGCTTGCGCAT
CCCGT
Found at i:20151844 original size:26 final size:26
Alignment explanation
Indices: 20151805--20151857 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20151795 GTTGACTTAG
*
20151805 GCATACAGAGTTCATT-CCAAGTCTAA
1 GCATACAGAATTCATTCCCAA-TCTAA
20151831 GCATACAGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
20151857 G
1 G
20151858 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:20153362 original size:898 final size:898
Alignment explanation
Indices: 20151616--20154702 Score: 4263
Period size: 898 Copynumber: 3.4 Consensus size: 898
20151606 GCTTGCGCAT
* *
20151616 CCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG-AGTTCATTCCCAGTTTAAGATC-GAA
1 CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCAG-A
* * *
20151679 CC-GAAACAAGGGTTGCGACAGCAGGATC-AGCAGCACGCA-AGGGGGTGCCCGACCGATCCGCG
65 CCAG-ACCAAGGGTTGCGACAGCAGGATCGA-CAGCACGCAGAGGGGG-ACCCGACCGATCCCCG
* * *
20151741 GCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGG
127 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
20151806 CATACAGAGTTCATTCCAAGTCTAAGCATACAGAATTCATTCCCAATCTAAGATCGGACCAGACC
192 CATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACC
* * * * *
20151871 GAGGTTTGTGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGC
257 GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * * *
20151936 ACCATCGTCGGAGCATCGCCAGAGAACCTGACTGGCGGCATTGTGGTTCTGACGGTCAGGGGGGC
322 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
20152001 CGAGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTAT
387 CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
20152066 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTATGCTGC
451 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
20152131 CAGCAGCCATTAAAGTGTCTCAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTATACT
516 CAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACT
* * * *
20152196 TTGAGTTTTTAGTTGAATGTTTTTATGCGTGCCAACAAAAATAGAAGGATCACGTCTACCAAGTT
581 TCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
20152261 TGGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCG
646 TTGGGCCAAAACTCC-TTCAAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTT-CAAAATCG
* ** *
20152326 TGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGCTTAATGGACCATTGTAT
709 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
* * *
20152391 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTA
774 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* *
20152456 CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGGATAGTGCCCGCCTG
839 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTG
* * * *
20152516 CCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGAC
1 CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
20152580 CTGACCAAGGGTTGCAATAGCAGGATCGATAGCACGCAGAGGGGGACCCGACTGATCTCTGGCTT
66 CAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
*
20152645 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCACGTTTCGTGGGTTGACTTAGGCATA
131 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
20152710 CCGAGTTCATTCCAAGTCTAAGCATACATAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGG
196 CGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGG
* *
20152775 GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCA
261 GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
20152840 TCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTCGGTTTCCGACGATCGGGGGGGCC-GG
326 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
20152904 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTC
391 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
20152969 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTA
456 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAA
* *
20153034 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAG
521 GCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
20153099 TTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTTGGG
586 TTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG
*
20153164 CCAAAACTCCTTCAAAAAAAATTTAAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCGTGAAA
651 CCAAAACTCCTTCAAAAAAAATTT-AAAAAATCTCGAACCGTAAAAAGTTTC-AAAATCGTGAAA
* *
20153229 AATAGAAAACGAGTAGTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
714 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
*
20153294 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACC
779 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
20153359 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCTCGG
844 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC-CTG
* * * *
20153415 CCGCCTGCCCGTTCGTTTCGGCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATTA
1 -C-CC-GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCA
* * * * *
20153479 GACCAGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGA
63 GACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* ** * * * * *
20153544 CATGCGCATCCCTTCCCTCTAGCCGGCTGAGCGCTCGTACTCTCGTTTCGTGGGTTGACTTAGGC
128 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * **
20153609 ATATGGAGTTCATTCCTAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
193 ATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
** * *
20153674 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTGGCATTTTTCTTTGCCGGGGCA
258 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * *
20153739 CCATCGTTGGAGCATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC
323 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * *
20153804 GGGGAGGGTGTTCGCATAAGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCTTAT
388 -GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
20153869 CCCTCATGAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGC
451 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
20153934 TAGAAGCCATGAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACT
516 CAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACT
* * * * *
20153999 TCGAGTTTTTTGCTCAATTTTTTTATGCATGCCAACAAAAATACAAGGATCTCTTCTACCAAG-T
581 TCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
20154063 TTGCGGCCAAAACTCCTTCCACAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATC
646 TTG-GGCCAAAACTCCTT-CAAAAAAAATTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAATC
20154128 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
708 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
* *
20154193 TGAACTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCAAC
773 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCAC
* * * **
20154256 CTA-TACCCTATCGATCAACGGCTTGCGCATACCGTCTCTCTGGTAGGCATAGT----GCCTG
836 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTG
* * *
20154314 CCCGCCCACTCGTTTCGTCGATTGGGTTAGGCATACGGCA-TTCATTCCCAGTCTAAGATCAGAC
1 CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCAGAC
** * ** * * * * * *
20154378 CAGACTGAGGGTTGTGGTAGTAGGATTCG-TAGCACGTAAAGGGGGACCCGATCGACCCCCGGCT
66 CAGACCAAGGGTTGCGACAGCAGGA-TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * ** * * * * *
20154442 TGTGCATCCTGCCCCTC-GGTCGGTTGAGCACCCGCACGCTCGTTCCATGCGCTGACTTAGGCAT
130 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
20154506 ACGGAGTTCATTCGC-AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACC-GAACTG
195 ACGGAGTTCATTC-CAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAG-ACCG
** * *
20154569 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
258 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
20154634 CCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCTTTGGGGTTCCGGCGATCGGGGGGTCC
323 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
20154699 GGGG
388 GGGG
20154703 TGGGTGTGAG
Statistics
Matches: 1948, Mismatches: 216, Indels: 53
0.88 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 4 0.00
895 203 0.10
896 112 0.06
897 19 0.01
898 461 0.24
899 4 0.00
900 336 0.17
901 12 0.01
902 336 0.17
903 2 0.00
904 52 0.03
905 392 0.20
906 14 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGG
GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAA
GCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG
CCAAAACTCCTTCAAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTG
Found at i:20153643 original size:26 final size:26
Alignment explanation
Indices: 20153607--20153659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20153597 GTTGACTTAG
* *
20153607 GCATATGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
20153633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
20153659 G
1 G
20153660 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:20154531 original size:26 final size:26
Alignment explanation
Indices: 20154502--20154554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20154492 GCTGACTTAG
* *
20154502 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20154528 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20154554 G
1 G
20154555 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20156808 original size:26 final size:26
Alignment explanation
Indices: 20156778--20156830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20156768 GTTGACTTAG
*
20156778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20156804 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20156830 G
1 G
20156831 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20157401 original size:898 final size:889
Alignment explanation
Indices: 20155023--20157829 Score: 2825
Period size: 898 Copynumber: 3.1 Consensus size: 889
20155013 ATTGGCTTAT
* * * * * * *
20155023 GCATACGGAGTTCATTCCCAGTCTAAGATCA-AACCGGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCC-AACCAAGGGTTGCGGCAGCACATACTGG
* * * * *** * *
20155087 GCCCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCA-TCGTCGGAGCATCACCGGA
65 GCTCGAGCACGTGCTGGTGTCGCATTTCTCTTAACCGGGGCACCACTCG-C-TAG-ATAACC-G-
* ** * * *
20155151 GAACCTGACCGGCGGCATTGGGGTTTTGACGATTAGGGGGGCCGGGGGGGTGTGCGCAAAT-GAT
125 GAACCTGA-C-GCGACATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGGACATGGA-
* * * * *
20155215 GTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCACACCTCGAGAACT
186 GTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * * *
20155280 GACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAATAGCC-----A-----T--
251 CACAACCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* * *
20155333 --T----ACACTTTTTTCAAATGGTCACAAATCTTGTACAGTTTGAGTTTTTAGTTGAATTTTTT
316 AATGAGGACACTGTTTTCAAATGGACACAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTT
* * *
20155392 TTTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
381 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAA
* *
20155457 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC-T-
445 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20155520 TTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20155585 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTG
575 CATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * *
20155650 CGCATCCCGTCTCTCTGGTCG-GTGCAGTGCACGCCCGGTCGCCCGCTCGTTTCGTCGGTTGGCT
639 CGCATCCCATCTCTCTGGCCGAGT--AGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCT
* * *
20155714 TAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCGAACCGGGGGTTACGACAGCAGGATCT
702 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGACAGCAGGATCG
* * * ** *
20155779 GCAGTACACAGAGGGGGACCCGATTGATCCCCGGTTTGTGCATCCCGCCCCTCTGGCCTGCTGAG
767 GCAGCACACAGAGGGGGACCAGACTGATCCCCGGCATGCGCATCCCGCCCCTCTGGCCTGCTGAG
* ** ** *
20155844 CGCCCGCATGCTCGTTTAATGGGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAA
832 CACCCGCACACTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
20155902 GCTTACGGAGTTCATTCCCAATGTAAGATTAGATCGGATCAAGGGTTGCGGCAGCACATACTGGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCCAACCAAGGGTTGCGGCAGCACATACTGGG
* * *** * *
20155967 CTCGGGCACGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTATATTACCGGAGA
66 CTCGAGCACGTGCTGGTGTCGCATTTCTCTTAACCGGGGCACCA-C-TCGCTAGATAACC-G-GA
* ** * *
20156032 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGTACATGGTGTGT
127 ACCTGA-C-GCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGGACATGGAGTGT
*
20156097 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
190 GATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
20156162 CCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
255 ACCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * * *
20156227 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTAAATTTATTTGT
320 AGGACACTGTTTTCAAATGGACAC-AAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
20156292 TCATGCAAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAATACTCCTTCCAAAAAAA
384 GCATGCCAACAAAAATACAAGGATCATGTCTACCA-ATTTGGGGCCAAAACTCCTTCCGAAAAAA
20156357 TTTTAAAAAATCTCGAACC-TCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
448 TTTTAAAAAATCTCGAACCGT-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20156421 GCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
20156486 TTGGCACT-C-GAAAATATGAAGATATGCCTAAACCAACCTACCACCCTATCGATCCACAACTTG
577 TTGGCA-TGCAG-AAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTG
* *
20156549 CGGATCCCATCTCTCTGGCTGAGTAGTGCCCGCCCGCCCGCCCACACGCTCGTTTCATCGGTCGG
639 CGCATCCCATCTCTCTGGCCGAGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTTCATCGGTCGG
* * * *
20156614 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTATGGCAGCAGGAT
700 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGACAGCAGGAT
** *
20156679 CGGCAGCACGTAGAGGGGGACTCAG-CTGATCCCCGGCATGCGCGTCCCGCCCCTCTGGCC-GAC
765 CGGCAGCACACAGAGGGGGAC-CAGACTGATCCCCGGCATGCGCATCCCGCCCCTCTGGCCTG-C
*
20156742 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 TGAGCACCCGCACACTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
20156804 GCATACAGATTTCATTCCCAGTCTAAGATCGGA-CCAACCGAGGG-TGCGGTAGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCCAACCAAGGGTTGCGGCAGCACATACTGGG
** * *
20156867 CTCGAGCATTTGCTGGTG-CGCATTTCT-TTAACCGAGAGTCAGCA-T-GCTAGAGTAACC-G-A
66 CTCGAGCACGTGCTGGTGTCGCATTTCTCTTAACCG-G-GGCACCACTCGCTAGA-TAACCGGAA
* ** *
20156926 CCTGA-TCGACATTGGGG-TCCGACGATCGGGGGTTC-TGGGGGTGTGCGCGACAT-GAGTGTGA
128 CCTGACGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG-GACATGGAGTGTGA
*
20156987 TGGCCT-CGTGGTACATT-GCCCTGTATATTGGCCCCCTATCGCCATCAATCAAACTTTGA-AAC
192 TGG-CTGC-TGGTAC-TTGGCCCT-TATATTGGCCCCCTATC-CC-TC-ATCAAACCTTGAGAAC
*
20157049 TCACAACCTCTTAAAGAGCATTTGAGATTTAAGCAGG-TTGCTGCC-GATCGAG-CATTAAAGTG
250 TCACAACCCCTTAAAGAGCATTTGAGATTTAA-CAGGTTTGCTGCCAG-T--AGCCATTAAAGTG
* * * *
20157111 TCTAAAATGGGGAACACTGTTTTCGACAGTGGACACAAATCTCTGTACACTTTGAGTTTTAAGCT
311 TCTAAAATGAGG-ACACTGTTTTC-A-AATGGACACAAATCT-TGTACAGTTTGAGTTTTTAGCT
20157176 GACACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCACATTTGGGGCCAAAAC
372 GA-A-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA-ATTTGGGGCCAAAAC
* * * *
20157241 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGGTTCAAAAATTGTGAAAAATAGAA
434 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAA
* *
20157306 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGC
499 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
20157371 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGA
564 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGA
*
20157436 TCCATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCCCGGCTCGTCCGCCCACCCGCC
628 TCCACGGCTTGCGCATCCCATCTCTCTGGCCGA-GTAGTG--CCC-G--C--CCG----CCCG--
* * * * * * * * * *
20157501 CTCCCACTCGTTTCGTCGGTTGGCTTCGACATATGAAGTTCATTCCCAGTCTAAGATCGGACAGG
679 --CCCGCTCGTTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGA
*** * ** * * * * * * * *
20157566 TTTGAGGGTTGCGGTAGCAGAATCGACAGTACACAAAGGGGGACCCGACTGATCCTCGACTTGCG
742 ACCGAGGGTTACGACAGCAGGATCGGCAGCACACAGAGGGGGACCAGACTGATCCCCGGCATGCG
** * * * * ** *
20157631 CAAACCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGATTCCCAGTCTAAG
807 CATCCCGCCCCTCTGGCCTGCTGAGCACCCGCACACTCGTTTAATGGGTTGA----C--T-TAGG
* * * * *
20157696 TATACGAAGTTCATTTCTAGTATAA
865 CATACGGAGTTCATTCCCAGTCTAA
* * * * *
20157721 GCATAC-GAAGTTCATTCCCAGTCTAAGATC-GAAT-CAGACCGAGGATTGTGGCAGCACATGCT
1 GCATACAG-AGTTCATTCCCAATCTAAGATCAG-ATCCA-ACCAAGGGTTGCGGCAGCACATACT
* * * * * * *
20157783 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA
63 GGGCTCGAGCACGTGCTGGTGTCGCATTTCTCTTAACCGGGGCACCA
20157830 TCGTCGGAGA
Statistics
Matches: 1630, Mismatches: 205, Indels: 146
0.82 0.10 0.07
Matches are distributed among these distances:
878 133 0.08
879 131 0.08
880 3 0.00
881 1 0.00
882 3 0.00
883 1 0.00
888 23 0.01
889 30 0.02
890 29 0.02
891 3 0.00
892 43 0.03
893 41 0.03
894 13 0.01
895 7 0.00
896 55 0.03
897 155 0.10
898 280 0.17
899 152 0.09
900 39 0.02
901 12 0.01
902 206 0.13
903 2 0.00
904 1 0.00
906 3 0.00
909 2 0.00
910 144 0.09
911 2 0.00
912 2 0.00
914 1 0.00
916 3 0.00
917 53 0.03
918 7 0.00
919 37 0.02
920 8 0.00
921 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGATCCAACCAAGGGTTGCGGCAGCACATACTGGG
CTCGAGCACGTGCTGGTGTCGCATTTCTCTTAACCGGGGCACCACTCGCTAGATAACCGGAACCT
GACGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGGACATGGAGTGTGATGGC
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCT
TAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACA
CTGTTTTCAAATGGACACAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCATGTCTACCAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
CTCTGGCCGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGACAGCAGGATCGGCAGCACACAGAGG
GGGACCAGACTGATCCCCGGCATGCGCATCCCGCCCCTCTGGCCTGCTGAGCACCCGCACACTCG
TTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20157747 original size:26 final size:26
Alignment explanation
Indices: 20157682--20157747 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
20157672 TCGTGGGTTG
*
20157682 ATTCCCAGTCTAAGTATACGAAGTTC
1 ATTCCCAGTCTAAGCATACGAAGTTC
* * *
20157708 ATTTCTAGTATAAGCATACGAAGTTC
1 ATTCCCAGTCTAAGCATACGAAGTTC
20157734 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
20157748 ATCGAATCAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
ATTCCCAGTCTAAGCATACGAAGTTC
Found at i:20158435 original size:26 final size:26
Alignment explanation
Indices: 20158399--20158451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20158389 GTTGACTTAG
*
20158399 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20158425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20158451 G
1 G
20158452 ATCGGACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20159324 original size:26 final size:26
Alignment explanation
Indices: 20159294--20159346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20159284 GTTAACTTAG
20159294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20159320 GCATACGGAGTTGATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20159346 G
1 G
20159347 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20159653 original size:899 final size:896
Alignment explanation
Indices: 20157845--20163504 Score: 7051
Period size: 899 Copynumber: 6.4 Consensus size: 896
20157835 GGAGAACCTG
* * *
20157845 ATGGGGACACTTTTTTCAAAAGGTAACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
20157910 TTTGCATGCTAAAAAAAATA-AAGGGATCGCGTCTACCAAGTTTAGGGCCAAAAATCCTTCCAAA
66 TGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** *
20157974 AAAATTTAAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGT
130 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
* *
20158039 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTACTAGCCATAAAAATG
195 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
20158104 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
260 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
20158169 GCGCATCCCGTCTCTCTGGCCAGCGT-GTGCCCGCTCGCCCGCCTGCCCCCTCGTTTCGTCGGTT
325 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCTGCCCGCTCGTTTCGTCGGTT
* * ** * *
20158233 GGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATTGGACCAGACCAAGGGTTACAGCAGCAAG
386 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAG
* * * *
20158298 AT-GGACAGCAAGCAG-AGGGGGACTCGGTCGATCCCCGGCTTGCGCAACCCGCCCCTCTGGCCG
451 ATCGG-CAGC-A-CGGTAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
20158361 ACTGAGCACCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
513 ACTGAGCACCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20158425 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACATGATCGAGGGT-GCCGGCAGCACATTCTGG
577 GCATACGGAGTTCATT-CCAGTCTAAGATCGGAC-TGACCGAGGGTAG-CGGCAGCACATGCTGG
* * * * * *
20158489 GGTC-GGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGAGCACCATCGCCGGTGCATCGTCGGAG
639 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
20158553 AACCTGACCGACGGAATTGGGG-TTCTGACGATC-GGGGGGCTGGGGGCTGTGCGCACATGATGT
704 AACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
20158616 GTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCA
768 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
20158681 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAA
833 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20158745 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
20158810 TGTGCATGCCAA-AAAAATAGAAGGATCATGCCTACCAATTTTGGGGCCAAAACACCTCCCGAAA
66 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * * * *
20158874 AAATTTAAAAAAATCCCTAACTGAAAAAAGCTTCAAAAATCGTGAAAAATAGAAAACAAATCGTC
131 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
*
20158939 TTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
196 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
20159004 CATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATACATGGCTTG
261 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
20159069 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTTCCCGCTCGTTTCGTCGGTTGGCTT
326 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * **
20159134 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTGTGGCAGCAAGATCGG
391 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGG
* * *
20159199 CAGCACGGTAGGAGGACCCAAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
456 CAGCACGGTAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
* * *
20159264 CCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
521 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
20159329 GTTGATTGCCAGTCTAAGATCGGACTGGACCGAGGGCTAG-GGCAGCACATGCTGGGCTCGGGCA
586 GTTCATT-CCAGTCTAAGATCGGACT-GACCGAGGG-TAGCGGCAGCACATGCTGGGCTCGGGCA
* *
20159393 TGTGCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
648 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
20159458 GGCGGCATTGGGGTTTCGGTGATCAGGGGGGCCGAGGGGCGTGTTCGCACATGAGGTGCGATGGG
713 GACGGCATTGGGGTTTCGGCGATCGGGGGGGCCG-GGGG-GTGTGCGCACATGATGTGCGATGGG
*
20159523 TGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
776 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
20159588 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAATGTCTAAA
841 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * **
20159644 ATAGGGACACTTTTTTCAAATGGTAACAAAATCTTATACACTTCGAGTTTTTAGCCAAATTATTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* * *
20159709 TT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAAATCCTTCCAAA
65 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
20159773 AAAATTTAAAAAAATCCCGAACCGTAAAAAGGTTT-GAAAATTATGAAAAATAAAAAACGAGTCA
130 AAAATTTAAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAAAAAACGAGTCA
*
20159837 TCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
194 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
20159902 GGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTGCCACCCTATCGATCCACGGCT
259 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
20159967 TGCGCATCCCGTCTCTCTGGCCGGCGTTGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCGGT
324 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-TGCCCGCTCGTTTCGTCGGT
* * * *
20160032 TGGCTTAGGCATAAGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAGATCGAGGGTT-TGGT
385 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-C----CGAGGGTTACGGC
* ** * * * *
20160096 AGCAAGATCGGTAGCACGCAAAGGAGGACCCGATCGATCCCCGACTTGCGTATCCCGCCCCTTTG
445 AGCAAGATCGGCAGCACG-GTAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
20160161 GCCGGCTTACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
509 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
20160226 TAAG-AT-C--A----A----A--C------CGGACT----GAGGGTTGTGGCAGCACATGATGG
574 TAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACTGACCGAGGGTAGCGGCAGCACATGCTGG
** * * * *
20160267 GCTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCAGAACATCGTCGGAG
639 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
20160332 AACCTGATCGATGGCATTGGGGTTTCGGTGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTG
704 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
20160397 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACATCGAAAACTCAC
769 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20160462 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
834 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20160525 ATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
20160590 TGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTAGGGCCAAAACTCCTCCCGAAA
66 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
20160655 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAACATTGTGAAAAATAAAAAATGAGTTATC
131 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
* *
20160720 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCTATAAAAATGG
196 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
20160785 CATTGGCACACAAAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
261 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * * * *
20160850 CGCATCCCGTCACCCTGGATGGCGTAGTGCCCGCCTGCCCGCCCGTTCGTTTCGTCAGTTAGCTT
326 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
20160915 AGGTATACGGAGTTCATTCCCAATCTAAGATCAGA-CTGAACCGTGGGTTACGGAAGCAGGATCA
391 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAAGATCG
* * * * * * * * *
20160979 GTAGCAC-ATAGATGGGGACTCGACCGATCCTCGACTTGCTCATCCTGGCCCTCTGGCCGACTGA
455 GCAGCACGGTAG--GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * ** *
20161043 GCGCCTGCACGCTCGTTTCGTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCTAC
518 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * * *
20161108 GGAGTTCATTCCTTGTCTAAGATCGAACCGGACCAAAGGTTGCGACAGCACATGCTGGGCTCGAG
583 GGAGTTCATTCC-AGTCTAAGATCGGA-CTGACCGAGGGTAGCGGCAGCACATGCTGGGCTCGGG
* * * * *
20161173 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGA
646 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
** * * *
20161238 CCGGTGGCATTGGGG-TTCTGACAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGG
711 CCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* **
20161302 GTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTAAGAACTCACACCCCC
775 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
20161367 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
840 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20161424 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCCGAATTTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
20161489 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCTTTCCGAAA
66 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
20161554 AAAGTTT-AAAAAATCCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
131 AAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
* *
20161618 CTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTATAAGCCATAAAAATG
195 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
20161683 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTT
260 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20161748 GCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCTCGCCTGCCCGCTTGTTTCATCGGTTGGCT
325 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
20161813 TTGGCATACAGAGTTCATTCCCTGTCTAAGATCAGACCGGACCAAGGGTTATGATC-GTAGGATC
390 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-GCAGCAAGATC
** * * * * * * * * *
20161877 AACCGTAC-GTAGAGGGAGACTCGATCGATCCCTGGCTTACGCATGCTGCCCCTATGGCCTG-TT
454 GGCAGCACGGTAG-GGG-GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACT
* * * *
20161940 GAGCACCCACACGCTTGTTTTGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
516 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
20162005 ACGAAGTTCATTCCCAATCTAAGATCAGATCGGACAGAGGGTTA-CGACAGCACATGCTGGGCCC
581 ACGGAGTTCATT-CCAGTCTAAGATCGGA-CTGACCGAGGG-TAGCGGCAGCACATGCTGGGCTC
* ** * * * **
20162069 AGGCATGCACTGGTGCCACATTTTTTTTCATCGGGGCACCATCGTCGGAGTATCATCGGAGAACC
643 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * ** * *
20162134 TGACC-AGCAGCATTGGGGTTCCACCGATCGGGGGGGCCAGGGGGTGTGCGCCCATGATGTGCGA
708 TGACCGA-CGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
20162198 TGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACC
772 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
20162263 TCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAA
837 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20162323 ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * *
20162388 TTATGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
65 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
20162453 AAAA-TT-------T---------TAAAAAGTTTCGAAACTCATGAAAAATAGAAAACGAGTCAT
130 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
* * *
20162501 CTTGCCATGAAACTTCACGTGAAGACTTAAGGGACTATTGCATGAATTTACAAGCCATAAAAATG
195 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20162566 GCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTT
260 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*** * ** *
20162631 GAATATCCCGTCTCTCTGGCCGGCGTTGTTTCCGCCCG-CTCGCCCGCTCGTTTCGCCGGTTGGC
325 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
20162695 TTAGGCATACGGAGTTAATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATT
389 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATC
* * * * * *
20162760 GGCAACACGCAG-AGGGGGATCCG-GCTGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCT
454 GGCAGCACG--GTAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
20162823 GAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
516 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
20162887 -C---G---A----A-TC--AGA-C---C-GA--G-GGTTA-CAGCAGCACATGCTGGGCTCGGG
581 ACGGAGTTCATTCCAGTCTAAGATCGGACTGACCGAGGGTAGCGGCAGCACATGCTGGGCTCGGG
* ** * * * * * *
20162929 CATGTGTTGGTTTCGTATTTTTCTTTACCGAGGCACCATCGTTGGGGCATCGCCGGAGAACCTGA
646 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
20162994 CCGACGGCATTAGGGTTCCGGTGATCGGGGGGGACGGTGGGGGTGTGAGCACATGATGTGCGATG
711 CCGACGGCATTGGGGTTTCGGCGATCGGGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATG
* *
20163059 GTTGCTGGTACTTGGCCTTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
774 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
20163123 CTTAAAGAGCAATTGAGATTTTATAGGCTTGCTGCCAGGAGCCATTAAAGTTTCTGAA
839 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20163181 ATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
1 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
20163246 TGTGCATGCCAACAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
66 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
20163311 AATTTTGAAAAAATCTCGAACC-TCAAAAATTTTCAAAAATTATGAAAAATAAAAAACGAGTCAT
131 AAATTTAAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
*
20163375 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
195 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
20163440 GCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
260 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
20163505 AGGCATACAG
Statistics
Matches: 4144, Mismatches: 519, Indels: 220
0.85 0.11 0.05
Matches are distributed among these distances:
857 164 0.04
858 148 0.04
859 50 0.01
861 2 0.00
862 1 0.00
865 1 0.00
866 1 0.00
867 3 0.00
869 2 0.00
870 1 0.00
871 3 0.00
872 7 0.00
873 113 0.03
874 157 0.04
875 2 0.00
876 3 0.00
877 56 0.01
878 2 0.00
879 1 0.00
880 9 0.00
881 453 0.11
882 13 0.00
883 458 0.11
884 3 0.00
885 2 0.00
886 1 0.00
888 7 0.00
892 1 0.00
894 8 0.00
895 159 0.04
896 168 0.04
897 15 0.00
898 13 0.00
899 1505 0.36
900 413 0.10
901 4 0.00
902 1 0.00
903 1 0.00
904 60 0.01
905 2 0.00
907 1 0.00
908 22 0.01
909 108 0.03
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (896 bp):
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGG
CAGCACGGTAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCAGTCTAAGATCGGACTGACCGAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
Found at i:20161115 original size:26 final size:26
Alignment explanation
Indices: 20161079--20161128 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20161069 GACTTAGGCA
20161079 TACGGAGTTCATTCCCAGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
**
20161105 TACGGAGTTCATTCCTTGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20161129 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:20162012 original size:26 final size:26
Alignment explanation
Indices: 20161975--20162027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20161965 GTTGAGTTAG
* *
20161975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20162001 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20162027 G
1 G
20162028 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20165244 original size:26 final size:26
Alignment explanation
Indices: 20165213--20165265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20165203 GTTGACTTAG
*
20165213 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20165239 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20165265 G
1 G
20165266 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20167120 original size:26 final size:26
Alignment explanation
Indices: 20167091--20167142 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20167081 TTCACTTAGA
20167091 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
*
20167117 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
20167143 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:20168321 original size:876 final size:875
Alignment explanation
Indices: 20166279--20168484 Score: 2744
Period size: 876 Copynumber: 2.5 Consensus size: 875
20166269 GCACATGTTT
* * *
20166279 TGGGCTCGGGCATGTGCTGGTACACGAGCA-TTTTCTTTGTCGGGGCACCATCGTCGAAGCATCG
1 TGGGCTCGGGCATGTGCTGGTGC-C-A-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * *
20166343 C-GAGAA-CTGACCCGACGACATTGGGGTTCCAACGATC-GGGGGCCGGAGGGGTGTGTGCGCAC
63 CGGAGAACCTGA-CCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGG-GGGG-GTGTGCGCAC
*
20166405 AATGATGTTGAGATGGGTGCTGGTAACTTGGCGCTTATAGTGGCCCCCTAAT-CCTCTATCAAAC
125 -ATGATG-TGCGATGGGTGCTGGT-ACTTGGCGCTTATAGTGGCCCCCT-ATCCCTC-ATCAAAC
* *
20166469 CTCGAG-A-TCGACACT-CCTTAAAGGGCATTTCAAGATTTTACA-GTTTACTGCCAGTAGCCGT
185 CTCGAGAACTC-ACACTCCCTTAAAGAGCATTTC-AGATTTTACAGGTTTACTGCCAGTAGCCAT
* *
20166530 TAAAGTG-CTGAAATGGGGACATTTTTTTCAAAATGGTC-CACAAATCTTGTACAC-TCGAGTTT
248 TAAAGTGTCTGAAATGGGGACACTTTTTTC-AAAT-GTCACA-AAATCTTGTACACTTTGAGTTT
* * ** * * * *
20166592 TTAGCTGAATTTTTTGTTTGCATACCAAC-AAAATATGAGGATCACGTCCACCAAATTTGTTGCC
310 TTAGCTGAATTTTTT-TATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCC
** **
20166656 AAAACTCCTTCCCGAAAAATTTTAAAAAAATCTCGAACCCCAGAAAAGTTTCAAAAATCATGAAA
374 AAAACTCCTTCCAAAAAAATTTT-AAAAAATCTCGAA--CCA-AAAAGTTTTGAAAATCATGAAA
20166721 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTATATGAATT
435 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTATATGAATT
*
20166786 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACTACC
500 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * *
20166851 CTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAATGCCTGCCCATCTGCCCGAC
565 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAAAGGCCCCCCCACCCGCCCGAC
* *
20166916 CACTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
630 CACTAGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
** * * *
20166981 GCAGTAGGATTGGCAGCACGCAGAGGGGAACCCGACCGATCCCCAGCTTGCGCATTCCGGCCCTC
695 GCAACAGGATCGGCAGCACGCAGAGGGGAACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTC
*
20167046 TGGCTGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTCACTTAGACATACGGAGTTCATTCCCAA
760 TGGCCGACTGAGCGCCCGCACGCTAGTTTCGTGGG----CTTAGACATAC-GAG-TCATT--C-A
* * *
20167111 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACATG
816 TC--AG-AT---GAGTTCATTCCCAGTCTAAGATCGCACCGAACCAAGGGTTGCAGCAGCACAAG
20167176 C
875 C
* *
20167177 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCG
1 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CG
* * * * *
20167242 GAGAACCTAACTGGCGGCATTGTGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCCCACATGA
65 GAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGA
* * * * *
20167307 TGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCTCTAATCAAACCTCGAGAAC
129 TGTGCGATGGGTGCTGGTACTTGGCGCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * **
20167372 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
194 TCACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
*
20167437 AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATCTT
259 AAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* * *
20167502 TTTATGCATGCCAACAAAAATACAAGGATCACATCTAAGAAGTTTGGGGCCAAAACTCCTTCCAA
323 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAACTCCTTCC-A
* *
20167567 AAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
387 AAAAAATTTTAAAAAATCTCGAACC-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
* * *
20167632 TCTTGTCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAAT
451 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTATATGAATTTACAAGCCATAAAAAT
** * * *
20167696 GGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCATGGCT
516 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
20167761 TGCGCATCCCGTCTCTCTGGCCGGC-AAAGGGGCCCCCCCGCCCGCCCG-CCTGCTCGTTTCGTC
581 TGCGCATCCCGTCTCTCTGGCCGGCGAAA--GGCCCCCCCACCCGCCCGACC-ACTAGTTTCGTC
* * * * *
20167824 GGTTGGCATAGGTATACGGGGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAA
643 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCA-------G-CAA
* ** * *
20167889 CAGGATCGGCAGCACGCAGAAGGGG-ACCTGGTCGATCCCCGGCTTGCGTATCCCGCCCCTCTGG
699 CAGGATCGGCAGCACGCAG-AGGGGAACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
* * *
20167953 CCGACTGAGCGCCCGTACGCTCGTTTCGTGGG-TT-GACTTA-G-G-CA-T-A-C-G-T-AGTTC
763 CCGACTGAGCGCCCGCACGCTAGTTTCGTGGGCTTAGACATACGAGTCATTCATCAGATGAGTTC
* * *
20168007 ATTCCCAGTCTAAGATCGCACCGAACCGAGGGTTTCGGCAGCACAAGC
828 ATTCCCAGTCTAAGATCGCACCGAACCAAGGGTTGCAGCAGCACAAGC
* * *
20168055 TGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTG
1 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-G
20168120 GAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGAT
65 GAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
20168184 GTGCGATGGGTGCTGGTACTTGGCGCTTATAGTGGCTCCCTATCCCTCATCAAACCTCAAGAACT
130 GTGCGATGGGTGCTGGTACTTGGCGCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
20168249 CACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGA
195 CACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGA
*
20168314 AATGGGGACACTTTATTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGC-GAAATTTT
260 AATGGGGACACTTTTTTCAAATG-TCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-AATTTT
* * **
20168378 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAACTCCTTCTGA
323 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAACTCCTTCCAA
*
20168443 AAAAATTTTAAAAAATCTTGAACTACAAAAAGTTTTGAAAAT
388 AAAAATTTTAAAAAATCTCGAAC--CAAAAAGTTTTGAAAAT
20168485 GGCATTGGCA
Statistics
Matches: 1149, Mismatches: 124, Indels: 92
0.84 0.09 0.07
Matches are distributed among these distances:
875 24 0.02
876 269 0.23
877 10 0.01
878 137 0.12
882 1 0.00
884 1 0.00
887 1 0.00
888 1 0.00
892 1 0.00
893 4 0.00
894 131 0.11
895 174 0.15
896 119 0.10
897 102 0.09
898 70 0.06
899 9 0.01
900 9 0.01
903 1 0.00
904 80 0.07
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGG
AGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCGCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACTCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
ATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAACTCCTTCCAAAAA
AATTTTAAAAAATCTCGAACCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTATATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGAAAGGCCCCCCCACCCGCCCGACCACTAGTTTCGTCGGTTGGCA
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAGCAACAGGATCGGCAGCACGC
AGAGGGGAACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTAGTTTCGTGGGCTTAGACATACGAGTCATTCATCAGATGAGTTCATTCCCAGTCTAAGATCG
CACCGAACCAAGGGTTGCAGCAGCACAAGC
Found at i:20168802 original size:26 final size:26
Alignment explanation
Indices: 20168766--20168818 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20168756 GTTGACATAG
20168766 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
20168792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20168818 G
1 G
20168819 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20170274 original size:26 final size:26
Alignment explanation
Indices: 20170238--20170290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20170228 GTTGACTTAG
20170238 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20170264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20170290 G
1 G
20170291 ATTAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20171576 original size:906 final size:897
Alignment explanation
Indices: 20168941--20172174 Score: 3812
Period size: 906 Copynumber: 3.6 Consensus size: 897
20168931 TGAAAAATAG
* *
20168941 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * **
20169006 TTTACAAGCCACAAAAATGGCATTGGTACGTAGAAATATGAAGATGCACCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
20169071 CCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCC-CCATATCC
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCC--ATCC
* * *
20169135 GCCCGCTCGTTTCGTC-AGTCGGCTTAGGCATACGAATTTCATTCCCAGTCTTAGAGGATCAGAA
194 GCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TA-A-GATCAG-A
** * * * *
20169199 TTAGA-C-AAGGTTATG-GGTAGCAAGGATTCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCC
254 CCAGACCAAAGG-T-TGCGGCAGC-AGGATT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * *
20169260 AGCTTGACGCAATTCCCGCCCCTCTGGCCAGCTAAGCGCGCCTGCATGCTCGTTTTCGTGGGTTG
315 AGCTTG-C-CCA-TCCCGCCCCTCTGGCCGGCTGAGCGC-CC-GCACGCTCG-TTTCGTGGGTTG
*
20169325 ACTTAGGCGATACGGAGTTCATTCCTCCAGTCTAAGCATACGGAGGTTTCATT-CCAGTCTAATA
374 ACTTAGGC-ATACGGAGTTCATT-C-CCAGTCTAAGCATACGGA-G-TTCATTCCCAGTCTAAGA
* * * * * * * * **
20169389 TCAGACCAAACGAGGGTTGCGAC-GCAC-AGCTGGGCACGGACATTTGCTGGTGTTGCATTTTTT
434 TCAGACCGACCGAGGGTTACGGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTGCCGCA-TTTTT
** * * *
20169452 CTTCGTCGGGTCACCATCGTCGGAGCGATCGTTGGAGAACCTGA-CGAACGGCATTGGGGTTCCG
498 CTTCACCGGGGCACCATCGTCGGAGC-ATC-TCGGAGAACCTGACCG-GCGGCATTGGGGTTCCG
* * * *
20169516 ACGATCGGGGGGGGCTTGGGGGGGTGTTAACGCACATGATGGGTCGATGGTGCTGGT-GTTGG-C
560 ACGATC-GGGGGGGC-CGGGGGGGTG-T-GCGCACATGATGTG-CGATGGTGCTGGTACTTGGCC
* * * * *
20169579 CTTATTATTGGACCA-TATCCC-AATGC-AACATCGAGAACTCACACCCCCTTAAAAAACA-TTG
620 CTTA-TATTGGCCCACTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
20169640 AGGAGTGTTTATCAGG-TTGCTGCCAATGAAGCCAATTAATAGT-TCTGAAATGGGGACACTTTT
683 A-GA-T-TTTA-CAGGTTTGCTGCC-A-GTAGCC-ATTAA-AGTGTCTGAAATGGGGACACTTTT
* *
20169703 TTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTTAATTTTTTTGTGCATGCCAAAA
740 TTCAAATGGTCACAAAATCTTGTACACTTTGA-GTTTTAGCTGAATTTTTTT-TGCATGCC--AA
* * *
20169768 AAAAAATACAAGGATCACATCTACCAAGTTTT-GGGCCAAAACTCTTTCCAAAAAAAATTTAAAA
801 AAAAAATACAAGGATCACGTCTACCAA-TTTTGGGGCCAAAATTCCTTCC-AAAAAAATTTAAAA
*
20169832 AATCCCGAACCGTAAAAAGTTTCAAAAATCTTGA
864 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
20169866 AAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
20169931 TTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
20169996 CCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----ACCCG-C--CCGC
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCATCCGC
** * * *
20170054 CTACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
196 CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * ** ** *
20170119 GAGGGTTACGGCAGCAGGATTGGCAGCACATAGAGGTAGACCCGACCGATCCCCAGCTTGCGCAT
261 AAAGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCCCAT
* * * * * ** *
20170184 CTCGCCCCTCTGGCCGACTGATCGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGT
326 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * **
20170249 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCGGACCAAGGGTTGTG
391 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTACG
* * *
20170314 GCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCA---T--
455 GCAGCACAAGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCG
*
20170374 ---CA-C-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGAGGGTA
520 GAGCATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTG
* * * *
20170433 TGTGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAA
584 TGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAA
* *
20170498 ACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCAT
648 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
20170563 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTGTTT
713 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT-TTT
* * *
20170628 ACCTGAATTGTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAA
777 AGCTGAATT-TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAA
*
20170693 ATTCCTTCCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
841 ATTCCTT-CCAAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
20170752 AAAATAGAAAACGAGTCAACTTGCCATAAAACTTCACGTGCAGCCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
20170817 TTTACAAGCCATAAATATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAATCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
20170882 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGCCCGCC-TGGCC
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCAT--CC
* * *
20170946 GCCCGCTCGTTTCATCGATTGGCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA
194 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
20171011 CCAAAGGTTGCGGCAGCAGGATTGGCAACACGCAGAGGGGGAGCCGCCCAATCCCCAGCTTGCCC
259 CCAAAGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCCC
* * *
20171076 ATCCCGCCCATCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
324 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** *
20171141 GTTCATTCCCAATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCGCATCGAGGGTTA
389 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTA
* * * *
20171206 CGGCAGCGCAAGCTAGGCTCAGGCATATGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGT
453 CGGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
* * * * * *
20171271 CGGAGCATCATCGGAAGAACCTAACCGGCGACATTGGGGATCCGGCCATCGGGGGGGCCGGTGGG
518 CGGAGCATC-TCGG-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
20171336 GTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCAT
581 GTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCAT
* *
20171401 CAAACCTGGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
645 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
20171466 CATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGACACAAAATCTTGTACACTTTGAGTT
710 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* * * * * *
20171531 TGAAGATGAAATTTTTTTTGCATGCCAACAAAAATACAGGGATCACGTTTACCAAGTTTGGGGCC
775 T-TAGCTG-AATTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCC
**
20171596 -AAATCTCCTTCTGAAAAAATTTAGAAAAATCCCGAACCGT-AAAAGTTTCAAAAATCGTGA
838 AAAAT-TCCTTCCAAAAAAATTTA-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * * **
20171656 AAAGTAGAAAACAATTCATCTTGCCATGAAACTTTACGTGAAGAATTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
20171721 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATGTGAAGATGTGCCTTAAGCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
20171786 CCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGTCGTAGTGCCCCCCCTCCCGTCCC
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCC-GCCAT--C
* * * * ***
20171851 CCCCCGCTCGTTTGCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGATTG
193 CGCCCGCTCGTTT-CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
20171916 GACCACAGGTTGCAGCAGTAGGATCGGCAGCACGCAGATGGGGACCCAACCGATCCCCAGCTTGC
257 GACCAAAGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
* * * *
20171981 ACATCCCGCTCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
322 CCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
20172046 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGACGGT
387 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGT
* * * * * **
20172111 TACGGAAGCACATGCTGGGCTCGGGCATGTGATGGTGTCGCATTTTTCTTCAATGGGGCACCAT
451 TACGGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
20172175 TGCCAGAGAA
Statistics
Matches: 1991, Mismatches: 262, Indels: 130
0.84 0.11 0.05
Matches are distributed among these distances:
884 4 0.00
885 48 0.02
886 209 0.10
887 71 0.04
888 12 0.01
889 24 0.01
890 33 0.02
891 25 0.01
892 31 0.02
893 38 0.02
894 277 0.14
895 1 0.00
896 1 0.00
897 2 0.00
902 9 0.00
903 17 0.01
904 217 0.11
905 55 0.03
906 312 0.16
907 298 0.15
908 9 0.00
909 1 0.00
910 21 0.01
911 1 0.00
912 23 0.01
913 20 0.01
914 12 0.01
915 4 0.00
916 2 0.00
917 44 0.02
921 5 0.00
925 165 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCATCCGC
CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
AAAGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCCCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTACGG
CAGCACAAGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
AGCATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAGCT
GAATTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAATTCC
TTCCAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
Found at i:20172068 original size:26 final size:26
Alignment explanation
Indices: 20172039--20172091 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20172029 GTTGACTTAG
20172039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20172065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20172091 G
1 G
20172092 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20172640 original size:26 final size:26
Alignment explanation
Indices: 20172604--20172656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20172594 GTTGACTTAG
**
20172604 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20172630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20172656 G
1 G
20172657 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20172825 original size:26 final size:26
Alignment explanation
Indices: 20172789--20172841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20172779 GTTGACTTAG
20172789 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20172815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20172841 G
1 G
20172842 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20173716 original size:26 final size:26
Alignment explanation
Indices: 20173686--20173738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20173676 GTTGACTTAG
*
20173686 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
20173712 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20173738 G
1 G
20173739 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20178274 original size:58 final size:58
Alignment explanation
Indices: 20178178--20178470 Score: 410
Period size: 58 Copynumber: 5.0 Consensus size: 58
20178168 CTTGTGTAGC
*
20178178 GAAAATTGATACTTTCAACTTTTCCCAAAAATACTTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAAG
*
20178236 GAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAAG
* * * **
20178294 AAAAATTGATACTTCCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAG
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAAG
***
20178354 GAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAAG
*
20178412 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTT-ATTTTTA
20178471 TTTAAAGAAA
Statistics
Matches: 207, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
57 2 0.01
58 114 0.55
59 38 0.18
60 46 0.22
61 7 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAAG
Found at i:20178374 original size:118 final size:117
Alignment explanation
Indices: 20178179--20178467 Score: 429
Period size: 118 Copynumber: 2.5 Consensus size: 117
20178169 TTGTGTAGCG
* **
20178179 AAAATTGATACTTTCAACTTTTCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATT
* * *
20178243 GATACTTTCAACTTTTCC-CAAAAAATATTTTTTTGGAAATTTATTTTTAAGA
66 GATACTTTCAACTTTTCCTC-AAAAACACTTTTTTGAAAATTTATTTTTAAGA
* *
20178295 AAAATTGATACTTCCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAAT
* *
20178360 TGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTATTTTTAAGG
65 TGATACTTTCAACTTTTCCTCAAAAACACTTTTTTGAAAATTTATTTTTAAGA
*
20178413 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
20178468 TTATTTAAAG
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
116 23 0.15
117 23 0.15
118 97 0.62
119 13 0.08
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAACACTTTTTTGAAAATTTATTTTTAAGA
Found at i:20178497 original size:14 final size:14
Alignment explanation
Indices: 20178478--20178507 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
20178468 TTATTTAAAG
*
20178478 AAAATAGAATAATA
1 AAAATAGAAAAATA
20178492 AAAATAGAAAAATA
1 AAAATAGAAAAATA
20178506 AA
1 AA
20178508 GAAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20178512 original size:17 final size:17
Alignment explanation
Indices: 20178473--20178512 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
20178463 GATTTTTATT
*
20178473 TAAAGAAAATAGAATAA
1 TAAAGAAAATAGAAAAA
20178490 T--A-AAAATAGAAAAA
1 TAAAGAAAATAGAAAAA
20178504 TAAAGAAAA
1 TAAAGAAAA
20178513 GTAAAACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 12 0.63
15 1 0.05
16 1 0.05
17 5 0.26
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (17 bp):
TAAAGAAAATAGAAAAA
Found at i:20178616 original size:8 final size:8
Alignment explanation
Indices: 20178573--20178632 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
20178563 CTAATCTAAT
20178573 AAATAAAA
1 AAATAAAA
*
20178581 AAA-AAAC
1 AAATAAAA
*
20178588 AAATAAAC
1 AAATAAAA
20178596 AAATAAATGA
1 AAATAAA--A
20178606 AAATAAAA
1 AAATAAAA
20178614 AAATTCAAAA
1 AAA-T-AAAA
20178624 AAA-AAAA
1 AAATAAAA
20178631 AA
1 AA
20178633 CCTGGAGCGG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
7 12 0.27
8 18 0.40
9 1 0.02
10 14 0.31
ACGTcount: A:0.82, C:0.05, G:0.02, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:20178987 original size:20 final size:20
Alignment explanation
Indices: 20178962--20179011 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
20178952 CGATTGAAGA
* * *
20178962 TTCATCGGATTCTGGGTTTT
1 TTCATCGAAATCTAGGTTTT
20178982 TTCATCGAAATCTAGGTTTT
1 TTCATCGAAATCTAGGTTTT
*
20179002 TTCACCGAAA
1 TTCATCGAAA
20179012 GTTCACCGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (20 bp):
TTCATCGAAATCTAGGTTTT
Found at i:20179601 original size:23 final size:24
Alignment explanation
Indices: 20179574--20179658 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 24
20179564 ATTAACAGAT
* *
20179574 AATATAATAAGATAAATCA-AAAA
1 AATATAATAAGAAAAATAATAAAA
* *
20179597 AATATTACAAGAAAAATAATAAAA
1 AATATAATAAGAAAAATAATAAAA
* *
20179621 AATAATAATAATAATAAATGAATTATAA
1 AAT-ATAATAAGAA-AAAT-AA-TAAAA
*
20179649 TATATAATAA
1 AATATAATAA
20179659 ATATAGAACT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 15 0.31
24 7 0.15
25 7 0.15
26 4 0.08
27 9 0.19
28 6 0.12
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (24 bp):
AATATAATAAGAAAAATAATAAAA
Found at i:20179671 original size:24 final size:23
Alignment explanation
Indices: 20179622--20179671 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
20179612 ATAATAAAAA
*
20179622 ATAATAATAATAATAAATGAATT
1 ATAATAATAATAATAAATGAACT
*
20179645 ATAATATATAATAA-ATATAGAACT
1 ATAATA-ATAATAATAAAT-GAACT
20179669 ATA
1 ATA
20179672 TAAATAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (23 bp):
ATAATAATAATAATAAATGAACT
Found at i:20179725 original size:24 final size:23
Alignment explanation
Indices: 20179671--20179747 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 23
20179661 ATAGAACTAT
* *
20179671 ATAAATAAAATACATATAAATATTA
1 ATAAA-AAAATAAATAT-AATAATA
*
20179696 ACAAAAAAATAAATA-AATAAATA
1 ATAAAAAAATAAATATAAT-AATA
* *
20179719 AGTAAAAATATACATATAATAATA
1 A-TAAAAAAATAAATATAATAATA
20179743 ATAAA
1 ATAAA
20179748 TGATAAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 3 0.07
23 8 0.19
24 25 0.58
25 7 0.16
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (23 bp):
ATAAAAAAATAAATATAATAATA
Found at i:20179975 original size:1 final size:1
Alignment explanation
Indices: 20179964--20180030 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
20179954 AACATTGTCA
* * * * * * * * *
20179964 TTTTTTGTTTTTTTTGTGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTGTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
20180029 TT
1 TT
20180031 ACCAAAGCTC
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (1 bp):
T
Found at i:20180027 original size:7 final size:7
Alignment explanation
Indices: 20179964--20180015 Score: 72
Period size: 7 Copynumber: 7.6 Consensus size: 7
20179954 AACATTGTCA
20179964 TTTTTTG
1 TTTTTTG
20179971 TTTTTT-
1 TTTTTTG
*
20179977 TTGTGTT-
1 TT-TTTTG
20179984 TTTTTTG
1 TTTTTTG
20179991 TTTTTTG
1 TTTTTTG
20179998 TTTTTTG
1 TTTTTTG
20180005 TTTTTTG
1 TTTTTTG
20180012 TTTT
1 TTTT
20180016 GTTTTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 5 0.12
7 36 0.88
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTTTG
Found at i:20180169 original size:42 final size:42
Alignment explanation
Indices: 20180037--20180335 Score: 462
Period size: 42 Copynumber: 7.1 Consensus size: 42
20180027 TTTTACCAAA
* * * *
20180037 GCTCCTATAAACAGAGGCTCAATGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
*
20180080 GCTCCTCTAAACAGAGGCACCATGACTTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
20180121 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
20180163 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
20180205 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAATAAATT
*
20180247 GCTCCTCTAAACAGAGGCACCATGAC-TTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
20180288 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
20180330 GCTCCT
1 GCTCCT
20180336 TGACAATCAT
Statistics
Matches: 241, Mismatches: 11, Indels: 9
0.92 0.04 0.03
Matches are distributed among these distances:
41 75 0.31
42 140 0.58
43 23 0.10
44 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:20181612 original size:17 final size:17
Alignment explanation
Indices: 20181587--20181629 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
20181577 ATCTATTTTT
*
20181587 TTTCATTTTCTCATTTC
1 TTTCTTTTTCTCATTTC
**
20181604 TTTCTTTTTCTTTTTTC
1 TTTCTTTTTCTCATTTC
20181621 TTTCTTTTT
1 TTTCTTTTT
20181630 TTTTCCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCTTTTTCTCATTTC
Found at i:20181618 original size:7 final size:7
Alignment explanation
Indices: 20181584--20181650 Score: 57
Period size: 7 Copynumber: 9.1 Consensus size: 7
20181574 TGAATCTATT
20181584 TTTTTTC
1 TTTTTTC
*
20181591 ATTTTCTC
1 -TTTTTTC
20181599 ATTTCTTTC
1 -TTT-TTTC
20181608 -TTTTTC
1 TTTTTTC
20181614 TTTTTTC
1 TTTTTTC
20181621 TTTCTTT-
1 TTT-TTTC
20181628 TTTTTTCC
1 TTTTTT-C
20181636 TTTTTTC
1 TTTTTTC
*
20181643 TCTTTTC
1 TTTTTTC
20181650 T
1 T
20181651 CATTTTTCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
6 7 0.14
7 22 0.43
8 19 0.37
9 3 0.06
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTTC
Found at i:20181633 original size:22 final size:21
Alignment explanation
Indices: 20181582--20181643 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 21
20181572 TTTGAATCTA
*
20181582 TTTTTTTTCATTTTCTCATTTCT
1 TTTTTTTTC-TTTTTTC-TTTCT
*
20181605 TTCTTTTTCTTTTTTCTTTCT
1 TTTTTTTTCTTTTTTCTTTCT
20181626 TTTTTTTTCCTTTTTTCT
1 TTTTTTTT-CTTTTTTCT
20181644 CTTTTCTCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 12 0.34
22 15 0.43
23 8 0.23
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTTTCTTTTTTCTTTCT
Found at i:20181656 original size:17 final size:17
Alignment explanation
Indices: 20181581--20181657 Score: 57
Period size: 17 Copynumber: 4.4 Consensus size: 17
20181571 ATTTGAATCT
*
20181581 ATTTTTTTTCATTTTCTC
1 ATTTTTTCTC-TTTTCTC
*
20181599 ATTTCTTTCT-TTTTCTT
1 ATTT-TTTCTCTTTTCTC
* * *
20181616 TTTTCTTTCTTTTTTTTTC
1 ATTT-TTTC-TCTTTTCTC
*
20181635 CTTTTTTCTCTTTTCTC
1 ATTTTTTCTCTTTTCTC
20181652 ATTTTT
1 ATTTTT
20181658 CATCCATTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
17 26 0.55
18 9 0.19
19 12 0.26
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (17 bp):
ATTTTTTCTCTTTTCTC
Found at i:20185583 original size:57 final size:58
Alignment explanation
Indices: 20185519--20185810 Score: 376
Period size: 58 Copynumber: 5.0 Consensus size: 58
20185509 TCTTGTGTAG
20185519 GGAAAATTGATACTTTCAAC-TTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
20185576 GGAAAATTGATACTTTCAACTTTTCCCAAAAA-ATACTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAA
* * **
20185634 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
*** ** *
20185694 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTAAAAAAATT-TTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
20185751 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTT-ATTTTTA
20185811 TTTAAAGAAA
Statistics
Matches: 200, Mismatches: 25, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
56 1 0.00
57 58 0.29
58 63 0.31
59 32 0.16
60 40 0.20
61 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:20185765 original size:117 final size:117
Alignment explanation
Indices: 20185519--20185807 Score: 415
Period size: 117 Copynumber: 2.5 Consensus size: 117
20185509 TCTTGTGTAG
* **
20185519 GGAAAATTGATACTTTCAAC-TTTCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAA
* *** *
20185582 TTGATACTTTCAACTTTTCCCAAAAAATACTTTTTTGGAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTAAAAAAATTATTTTTAA
*
20185634 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCC-TAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
*
20185699 ATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTAAAAAAATT-TTTTTAA
65 ATTGATACTTTCAACTTTTCC-CAAAAAACACTTTTTAAAAAAATTATTTTTAA
*
20185751 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 GGAAAATTGATACTTTCAACTTTT-CCTAAAAATATTTTTTTT-GAAAATTTGATTT
20185808 TTATTTAAAG
Statistics
Matches: 157, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
115 20 0.13
116 5 0.03
117 69 0.44
118 62 0.39
119 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAA
TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTAAAAAAATTATTTTTAA
Found at i:20185861 original size:29 final size:27
Alignment explanation
Indices: 20185813--20185872 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 27
20185803 GATTTTTATT
20185813 TAAAGAAAATAGAATAAAAAATTGAAAAA
1 TAAAGAAAATAGAATAAAAAA-T-AAAAA
20185842 TAAAGAAAAGTA-AA-ACAAAAATAAAAA
1 TAAAGAAAA-TAGAATA-AAAAATAAAAA
20185869 TAAA
1 TAAA
20185873 ATTAAGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
27 9 0.31
28 2 0.07
29 16 0.55
30 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (27 bp):
TAAAGAAAATAGAATAAAAAATAAAAA
Found at i:20185882 original size:17 final size:16
Alignment explanation
Indices: 20185860--20185899 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20185850 AGTAAAACAA
*
20185860 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
20185876 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
20185893 AAATAAA
1 AAATAAA
20185900 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:20186967 original size:24 final size:24
Alignment explanation
Indices: 20186940--20187089 Score: 62
Period size: 27 Copynumber: 5.9 Consensus size: 24
20186930 ATTACAAGAA
20186940 AAATAAAAAATAATAATAATAAAT
1 AAATAAAAAATAATAATAATAAAT
*
20186964 AAATTATAATATATAATAA-ATATAGAACT
1 AAA-TA-AA-AAATAATAATA-ATA-AA-T
* *
20186993 ATAT-AAAAA-AATAACATATAAAT
1 AAATAAAAAATAATAATA-ATAAAT
20187016 ATTAATAGAAAAAT-A-AATAAATAAAT
1 A--AATA-AAAAATAATAAT-AATAAAT
*
20187042 AAGTAAAAATATACATTTAATAAT-AAT
1 AAATAAAAA-ATA-A--TAATAATAAAT
*
20187069 AAATAATAAATACATAA-AATA
1 AAATAAAAAATA-ATAATAATA
20187090 CAAAAGAAAA
Statistics
Matches: 98, Mismatches: 8, Indels: 40
0.67 0.05 0.27
Matches are distributed among these distances:
23 9 0.09
24 18 0.18
25 11 0.11
26 20 0.20
27 28 0.29
28 6 0.06
29 6 0.06
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (24 bp):
AAATAAAAAATAATAATAATAAAT
Found at i:20186972 original size:17 final size:17
Alignment explanation
Indices: 20186941--20187077 Score: 67
Period size: 17 Copynumber: 7.9 Consensus size: 17
20186931 TTACAAGAAA
20186941 AATAAA-AAATAATAAT
1 AATAAATAAATAATAAT
*
20186957 AATAAATAAATTATAAT
1 AATAAATAAATAATAAT
*
20186974 -ATATAATAAATATAGAACT
1 AATA-AATAAATA-ATAA-T
* *
20186993 ATATAAAAAAATAA-CAT
1 A-ATAAATAAATAATAAT
20187010 -ATAAATATTAATAGA-AA-
1 AATAAATA--AATA-ATAAT
20187027 AATAAATAAATAAATAAGT
1 AATAAATAAAT-AATAA-T
*
20187046 AA-AAATATACAT-TTAAT
1 AATAAATA-A-ATAATAAT
20187063 AAT-AATAAATAATAA
1 AATAAATAAATAATAA
20187078 ATACATAAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 36
0.68 0.06 0.26
Matches are distributed among these distances:
15 8 0.09
16 17 0.18
17 31 0.33
18 21 0.22
19 5 0.05
20 9 0.10
21 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AATAAATAAATAATAAT
Found at i:20186974 original size:14 final size:14
Alignment explanation
Indices: 20186941--20187077 Score: 52
Period size: 14 Copynumber: 9.4 Consensus size: 14
20186931 TTACAAGAAA
*
20186941 AATAAAAAAT-AAT
1 AATAATAAATAAAT
20186954 AATAATAAATAAAT
1 AATAATAAATAAAT
*
20186968 TATAATATATAATAAAT
1 AAT-A-ATA-AATAAAT
* * *
20186985 ATAGAACTATATAAAAA
1 A-ATAA-TAAAT-AAAT
* *
20187002 AATAACATATAAAT
1 AATAATAAATAAAT
*
20187016 ATTAATAGAA-AAAT
1 AATAATA-AATAAAT
20187030 -A-AATAAATAAAT
1 AATAATAAATAAAT
20187042 AAGTAA-AAATATACATTT
1 AA-TAATAAATA-A-A--T
20187060 AATAAT-AATAAAT
1 AATAATAAATAAAT
20187073 AATAA
1 AATAA
20187078 ATACATAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 34
0.67 0.09 0.24
Matches are distributed among these distances:
11 2 0.02
12 8 0.09
13 16 0.17
14 22 0.23
15 10 0.11
16 11 0.12
17 21 0.22
18 4 0.04
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (14 bp):
AATAATAAATAAAT
Found at i:20187979 original size:26 final size:26
Alignment explanation
Indices: 20187943--20187995 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20187933 GTTGACCTAG
20187943 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20187969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20187995 G
1 G
20187996 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20188884 original size:26 final size:26
Alignment explanation
Indices: 20188848--20188900 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20188838 GTTGACTTAG
20188848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20188874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20188900 G
1 G
20188901 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20189328 original size:904 final size:905
Alignment explanation
Indices: 20187207--20189776 Score: 3872
Period size: 903 Copynumber: 2.8 Consensus size: 905
20187197 GTCTACAGGT
* *
20187207 AGGATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGCGATGGCTGCT
1 AGGATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
20187272 GGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
20187336 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
20187401 TTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
20187466 AAAAATAAAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * * *
20187531 TCCTGAACCGCAAAAAGTTTCCAATATCATGAAAAATTGAAAACGATTCGTCTTGCCATGAAACT
325 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
20187596 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAA
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * ** **
20187661 AAATATGAAGATGTCCCTAAACCCACCAATAACCCTATCGATCCACAGCTTGCGCATCAAGTCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * * *
20187726 TCTGGCCGGCCTAGTGACCGCCCGCC-CGC-CCT-CCCGCTCGTTTCGTCGGTTGGCTTATGCAT
520 TCTGGCCGGCATAGTGCCCGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
20187788 ACGGAGTTCATTCCTAGTCTAAGATCACACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGGAC
585 ACGGAGTTCATTCCTAGTCTAAGATCACACCAGACCAAGGGTTGCGGCAGCAAGATTGGTAGCAC
* * *
20187853 GCAGAGGGGGACCCGGTTGATCCCCCGCCTGCGCATCCCGCCCTTCTGGCCAGCTGAGCGCCCGC
650 GCAGAGGGGGACCCGGCTGAT-CCCCGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGC
* * *
20187918 ACGCTCGTTTCGTGAGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCA
714 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
20187983 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACAAGTTGGGCTTGGGCATGTGCT
779 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACAAGCTGGGCTCGAGCATGTGCT
* * * *
20188048 GGTGCCGCATTTTTCTTCGTCGACGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
844 GGTGCCGCATTTTTCTTCGACGACGCACCATCGACGGAGCATCGTCGGAGAACATGACCAGC
20188110 -GGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGC
1 AGG-ATTG-GGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
20188173 TGGTACTTAGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
20188238 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
20188303 TTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
20188368 CAAAAATACAAGGATCATTTCTACCTATTTTGGAGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
20188433 ATCCCGTACCGTAAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAAC
324 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
20188498 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
20188563 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* *
20188628 CTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
519 CTCTGGCCGGCATAGTGCCCGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
*
20188693 TACGGAGTTCATTCCTAGTCTAAGATCACACCTGACCAAGGGTTGCGGCAGCAAGATTGGTAGCA
584 TACGGAGTTCATTCCTAGTCTAAGATCACACCAGACCAAGGGTTGCGGCAGCAAGATTGGTAGCA
* * * * *
20188758 CGCAGAGGGGGACCCGGCCGATCCCCGGTTGCGCAT-CCGACCCCTCTGGCCGGCTGAGGGCCCA
649 CGCAGAGGGGGACCCGGCTGATCCCCGCTTGCGCATCCCG-CCCTTCTGGCCGGCTGAGCGCCCG
20188822 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
713 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
20188887 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGC
778 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACAAGCTGGGCTCGAGCATGTGC
* * *
20188952 TGGTGCCGCATTTTTCTTCGACGAGGCACCATTGACGGAGCATCG-CTGGAGAACATGATCAGC
843 TGGTGCCGCATTTTTCTTCGACGACGCACCATCGACGGAGCATCGTC-GGAGAACATGACCAGC
* *
20189015 AGGATTGGGATTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGAGCGATGGGTGCT
1 AGGATTGGG-TTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
20189078 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
20189143 GAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
20189208 TTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
20189273 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
260 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
20189338 TCCCGAACCACAAAAAATTTCAAAAATCGTAAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
325 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * * * *
20189403 TCACGTGAAGGCTGAAGGCACCATTCTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGCAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
** * * ** *
20189468 AAATATGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCTATAGCTTGTACATCCCATCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * *
20189533 TCTGGCCGGCATAGTGCCTG--C-CCGCCCGTCC-GCCCGCTCATTTCGTCGATTGGCTTAGGCA
520 TCTGGCCGGCATAGTGCCCGCCCGCCGCCCG-CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *** * * * * *
20189594 TATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGTAGGATTGATGGCA
584 TACGGAGTTCATTCCTAGTCTAAGATCACACCAGACCAAGGGTTGCGGCAGCAAGATTGGTAGCA
* * * *
20189659 CGTAGAGGGGGACCCAGCTGATCCCCGACTTGCGCATCCCGCCCTTCTAGCTGGCTGAGCGCCCG
649 CGCAGAGGGGGACCCGGCTGATCCCCG-CTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCG
* * *
20189724 TACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
713 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20189777 ATCAGACCGG
Statistics
Matches: 1505, Mismatches: 148, Indels: 29
0.89 0.09 0.02
Matches are distributed among these distances:
901 114 0.08
902 106 0.07
903 500 0.33
904 452 0.30
905 223 0.15
906 110 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
AGGATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
CTGGCCGGCATAGTGCCCGCCCGCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCTAGTCTAAGATCACACCAGACCAAGGGTTGCGGCAGCAAGATTGGTAGCACG
CAGAGGGGGACCCGGCTGATCCCCGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACAAGCTGGGCTCGAGCATGTGCTGG
TGCCGCATTTTTCTTCGACGACGCACCATCGACGGAGCATCGTCGGAGAACATGACCAGC
Found at i:20190540 original size:26 final size:26
Alignment explanation
Indices: 20190486--20190541 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20190476 GGGGTTGACT
**
20190486 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACGGAGTTCATTCCCAGAC
20190512 TAAGCATACGGAGTTCATTCCCAGAC
1 TAAGCATACGGAGTTCATTCCCAGAC
20190538 TAAG
1 TAAG
20190542 ATTGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGAC
Found at i:20191875 original size:746 final size:738
Alignment explanation
Indices: 20190807--20192145 Score: 1930
Period size: 746 Copynumber: 1.8 Consensus size: 738
20190797 TGCTGGCAGT
* * *
20190807 AGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGA
1 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
20190872 GTTTTTAGCTGAATTTTTTTGTGCATGTCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
66 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGG
*
20190937 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAATTTCAAAAATCGTAAA
131 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAATTTCAAAAATCGTAAA
* *
20191002 AAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGCACCATTCTATGAAG
196 AAATAGAAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTGAAGGCACCATTCTATGAAG
* * *
20191067 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAT
261 TTACAACCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
20191132 TCTATCGATCTATAGCTTGTACATCCCATCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGTCCGC
326 CCTATCGATCCATAGCTTGCACATCCCATCTCTCTGGCCGGCATAATG-CT---CG--C--CCGC
* ** * *
20191197 CCGCTCATTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACC
383 CAGCTCATTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATTAGACCAGACC
*** * * * ** * * * * *
20191262 -AAGGGTTGCGGTAGTAGGATTGATGGCACGTAGAGGGGGACCCAGCTGATCCCCGACTTGCGCA
448 GAA-GGCAACAGCAGTAGGATCGACAGCACGAAGAGGGGGACCCAACCGATCCACGACTTGCACA
* * * *
20191326 TCCCG-CCCTTCTAGCTGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGA
512 TCCCGCCCCTT-TAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
20191390 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATACTGGGCTCGGGCAT
576 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATACTGGGCTCGGGCAT
20191455 GTTCTGGTGTCATATTTTTCTTCACCGGGGCACCACCGCTGGAGAACCTGACCTGCAGAATTTGG
641 GTTCTGGTGTCATATTTTTCTTCACCGGGGCACCACCGCTGGAGAACCTGACCTGCAGAATTTGG
20191520 GTTCCGGCGATCGGGGGGGCCGGGGGGGCCAAC
706 GTTCCGGCGATCGGGGGGGCCGGGGGGGCCAAC
* * *
20191553 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATGTTGTACATTTCGA
1 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
20191618 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGG
66 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGG
* * * ** * ** * *
20191683 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCCAAACCGCAAGGAGTTTTGAAAATTGTGAA
131 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAATTTCAAAAATCGTAAA
* *
20191748 AAATAGAAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTTG-AGGGACCATTGTATGAA
196 AAATAGAAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGC-TGAAGGCACCATTCTATGAA
* *
20191812 -TTCACAACCCGTAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACC
260 GTT-ACAACCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * ** *
20191876 ACCCTATCGATCCATGGCTTGCGCATTCTGTCTCTCTGGCCGGCGTAATGCTCGCCCGCCAGCTC
324 ACCCTATCGATCCATAGCTTGCACATCCCATCTCTCTGGCCGGCATAATGCTCGCCCGCCAGCTC
* * *
20191941 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATTAGACCGGACCGAAGGC
389 ATTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATTAGACCAGACCGAAGGC
* *
20192006 AACAGCAGTAGGATCGACAGCATGAAGAGGGGGACCCAACCGATCCACGACTTGCACATCCTGCC
454 AACAGCAGTAGGATCGACAGCACGAAGAGGGGGACCCAACCGATCCACGACTTGCACATCCCGCC
*
20192071 CCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
519 CCTTTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
20192136 CCAGTCTAAG
584 CCAGTCTAAG
20192146 CATATGGAGT
Statistics
Matches: 521, Mismatches: 68, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
738 178 0.34
739 7 0.01
740 1 0.00
742 2 0.00
745 4 0.01
746 327 0.63
747 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (738 bp):
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGG
GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAATTTCAAAAATCGTAAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTGAAGGCACCATTCTATGAAG
TTACAACCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCATAGCTTGCACATCCCATCTCTCTGGCCGGCATAATGCTCGCCCGCCAGCTCAT
TTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATTAGACCAGACCGAAGGCAA
CAGCAGTAGGATCGACAGCACGAAGAGGGGGACCCAACCGATCCACGACTTGCACATCCCGCCCC
TTTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTTCTGGTGT
CATATTTTTCTTCACCGGGGCACCACCGCTGGAGAACCTGACCTGCAGAATTTGGGTTCCGGCGA
TCGGGGGGGCCGGGGGGGCCAAC
Found at i:20192168 original size:25 final size:26
Alignment explanation
Indices: 20192119--20192170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20192109 GTTGACTTAG
20192119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20192145 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20192170 G
1 G
20192171 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20193675 original size:26 final size:26
Alignment explanation
Indices: 20193623--20193675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20193613 GTTCACTTAG
* * *
20193623 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20193649 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20193675 G
1 G
20193676 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20194395 original size:26 final size:26
Alignment explanation
Indices: 20194359--20194411 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20194349 GTTTGCTTAG
20194359 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20194385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20194411 G
1 G
20194412 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20195088 original size:26 final size:26
Alignment explanation
Indices: 20195058--20195110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20195048 GTTGACTTAG
20195058 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
20195084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20195110 G
1 G
20195111 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:20195986 original size:26 final size:26
Alignment explanation
Indices: 20195946--20195998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20195936 GTTGACCTAG
20195946 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
20195972 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
20195998 G
1 G
20195999 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:20196871 original size:26 final size:26
Alignment explanation
Indices: 20196842--20196894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20196832 GTTCACTTAG
*
20196842 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20196868 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20196894 G
1 G
20196895 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20197771 original size:26 final size:26
Alignment explanation
Indices: 20197735--20197787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20197725 GTTGACTTAG
*
20197735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
20197761 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
20197787 G
1 G
20197788 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:20198691 original size:26 final size:26
Alignment explanation
Indices: 20198639--20198691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20198629 GTTGACTTAG
* * *
20198639 GCATACAAAGTTCATTCTCGGTTTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
20198665 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20198691 G
1 G
20198692 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20198785 original size:904 final size:900
Alignment explanation
Indices: 20194550--20204754 Score: 13241
Period size: 904 Copynumber: 11.4 Consensus size: 900
20194540 ACGCACATGA
*
20194550 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCATAAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* *
20194615 ACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT-AAAAAGTTT
** * * *
20194679 GGAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTTAGGTGAAGGCTTAAGGGA
130 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
20194744 CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
20194809 ACCCACCTACCA-CCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCAGCGTAGT--G-C
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCC
** * * * * * *
20194870 -TTCA-CT--CACTTGTTTCGTTGGTTAGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCA
325 GCCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
20194931 GACTGGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAGGGGGA-CCGGTCGATCCCCGA
390 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* ** * * * *
20194995 CTTGCGCATCCCACCATTTTGGTCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
455 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
20195060 ATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-CCT
520 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-
* * * *
20195124 GAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTT-GACCGGGG
584 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGG
* * * * * * *
20195188 AACCATCGCCTGAGTATCACCGGAGAACCTGACTGGCGACATTGGGGTTCC-AGCGATCGGAGGG
648 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGG
*
20195252 GCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
712 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
20195316 ATCCCTCATCAAACCTCAAGAGCTCACACCACCTTAAAGAGCATTTAAGATTTTACAGGTTTGCT
777 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
20195381 ACCAGTAGCCATTAAAGGGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
842 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20195440 TGTACACTTCGAGTTTTTAGCTGAATTTATTTATGCATGCC-AAAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * * *
20195504 ACCAAGTTTGGGGCCAAAAC-CCCTCTGAAAAAATTTTAAAAAAT-ATCGAATCGGAAAAAGTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTT
** * ** * *
20195567 TGAAAATCGTGAAAAATAAAAAATAAGTCGTCTTGCCGTGAAACTTCACGTG-ATGCTTAAGGGA
130 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * ***
20195631 CCAATATATGAATTTACAAGCCTTGAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
20195696 ACCCACCTACCACCCTATCGATCCACGGCTTGCGTAACCCGTCTCTCTGGTCGGCATAGTGC-CC
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCC
* * **
20195760 G-----CT--CGCTCGTTTCGTCGGTTGGCTTAGGCCTACGGAGTTCATTCCCAATCTAAGATTG
325 GCCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * ** * * *
20195818 GATTGGACCAAGGGTTACGGTAGTGGGATCGACAGCATGCAGAGGGGGACCCGGTCGATCCCTGG
390 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * *
20195883 CTTGCGCATCCCGTCGCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGC
455 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
20195948 ATACAGAGATCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
520 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** * *
20196013 AGGGTTGCGACAGCACATGCTGGGCTCGACCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCA
585 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * * ** * * * * *
20196078 CCATCACCGGATCGTTGCTGTAGAACCTTACCGGCGGCCTTGGGGTTCCGACGATCGAGGGGGCC
650 CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * * * *
20196143 GTGGGTGGTGTGAGCACATGATATGCAATGGGTGCTGGTACTTGGCCCCTATATTAGCCTCCTAT
715 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
20196208 CCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
779 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
20196273 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCCAATGGCCACAAAATCT
844 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20196330 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATATAAGGAT--CGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * *
20196392 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAATAT-C-GAACTGCAAAAAGTA
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA-AA-ATCCTGAACCGTAAAAAGTT
* * *
20196455 TCAAAAATCATGAAAAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
129 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
20196520 ACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
194 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
20196585 AACCCACCTACCACCCTAT-GATCCACGGCATGCGCATCCTGTCTCTCTAGCCGGCGTAGTGCTC
259 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C
* *
20196649 GCCCGCCCA--T-ACGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
322 G-CCGCCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
20196710 ATC-GAACTAGACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCAGAGGGGGACCTGGTCGATT
386 ATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATC
* * * * *
20196774 CCCGGCTT-CTGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCACACTCGTTTCATGGGTTCAC
450 CCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * * *
20196838 TTAGGCATACGAAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACT
514 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
20196903 GGACCGAGGGTTGCGGTAGCACAT-CTTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGC
579 GGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
20196967 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACTTGACCGGAGGCATTTGGGTTCCGACGATCGG
643 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * * * * * * * * *
20197032 GGGGACTGGTGGGGTGTGCGCACCTGATGTGCAATGTGTGATGGTTCTTGGACTTTATATTGGCC
708 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
20197097 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTT
773 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
20197162 TGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCT
838 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20197225 TGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
20197290 ACCGAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTATAAAAAAT-CTCGAACCGTAAAATGTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTT
20197354 CAAAAATCGTGAAAAATAGAAAACGA---GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
130 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** * *
20197416 CCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
20197481 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGC-CC
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCC
*
20197545 GCCC-GC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
325 GCCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * * *
20197607 GACCGGATCGAGGGTTGAGATAGCAGGATTGACAGCATGTAGAGGGGGACCCGGTCGATCCCCGG
390 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * *
20197672 CTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGC
455 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
20197737 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACC-AACCT
520 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-
* * * * * *
20197801 GAGGGCTACGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGG
584 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG
* * *
20197865 CACCAT--TACAGGAGCATCACCGGAGAACCTGACCAGCGGCATTAGGGATCCGACGATCGGGGG
648 CACCATCGT-C-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * * * * *
20197928 GGCCGGGGGGGAGTGCGCACATAATGTGTGGTGGGTGCTGGTAATTGGCCCTTATATTGTCCCCC
711 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
20197993 TATCTGTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
776 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
20198058 TGCCAATAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCGCAAAATTT
841 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
20198118 TGTACACTTCGAGTTCTTAGCTAAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
20198183 ACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAGAAAATGCTGAACCGTAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* *
20198248 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGGC
131 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* **
20198313 CATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* ** *
20198378 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCGTGTCTCTCTGGTCGGCGTAGTGCCCGC
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CGC
* *
20198443 CTGCCCACCTGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
324 C-GCCCACCTGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
20198508 TCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGTACCCGATCGATCCC
387 TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCC
* * ** * * *
20198573 CGACTTGCGTATTTCGCCCCTCTGGCCTGCTGAGTGCCCGCACTCTCGTTTCGTGGGTTGACTTA
452 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
** * * * * *
20198638 GGCATACAAAGTTCATTCTCGGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA
517 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
** * * *
20198703 TAGAGGGTTACGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
582 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
20198768 GCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCAGGGGG
647 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * *
20198833 GCCGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCT
712 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
20198898 ATCCCTCGTCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
777 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
20198963 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCT
842 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCT
* *
20199023 TGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* *
20199088 ACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
20199152 AAAAATCGTGAAAAATAGAAAACGAGTCGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
131 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
20199217 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAA
* * * ** *
20199281 ACCCACCTACCACGCTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACATAGTGCCTG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-G
* * * * * * * *
20199346 CCCGCCTACCCGCATGCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTGCATTCCTAGT-AAAC
323 -CCGCCCACCTGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-
* * * * * ** * * *
20199410 TATTAGACC-GAACGAAGGGTTACGACAGCAGGATCGGTAGTACGTAGAGGGGGACCCGACCGAT
385 GATCAGACCGGACCG-AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGAT
* * * * * *
20199474 CCTCGGCTTGCACATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGAC
449 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
20199539 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-TGAAGATCGGAC
514 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGAC
* * * ** *
20199603 CAGACCGACGGTTGCGGCAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTTCGT
578 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* ** *
20199668 CGGGGCACCA---TC--A-C--CA---GAGAACCTGACTGATGGCATTGGGGTTCCGGCGATC--
643 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * *
20199720 GGGGTCCTGGGGGGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTT-GCCCTTATATTGGCC
708 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
20199784 GCCTATCCCTCATGAAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
773 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
20199849 TGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCG
838 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20199912 TGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* *
20199977 ACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAGATTTTAAAAAAT-CTCGAACCGTAAAAAGTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTT
* * *
20200040 AAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGA
130 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
20200105 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
20200170 ACCCACCTACCACCTTATCGATCCACGGCTTGCGCCTCCTGTCTCTCTGGCCGACGTAGTGC-CC
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCC
* * *
20200234 GCCC-GCT--CGTTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
325 GCCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** ** ** * * **
20200296 GACCGGATCGATGGTTGCCACAGCACAATCGGTACCACGCAGAGGGGGACCCGACCGATCCCCAA
390 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * *
20200361 CTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGC
455 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
20200426 ATACGGAGTTCATTCCCAGTCTAATCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCG
520 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
20200491 AGGGTTGCAGTAGCACTTGCTGGGCT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
585 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * ** * *
20200555 CCATCGTCGGAGCATCACCAGAGAACCTCACCGACGGCATTGGGGTTCCGGTGATTGGAGGGGCC
650 CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* ** *
20200620 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTCTCCCCTTATC
715 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
20200684 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGTC
780 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
20200749 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
845 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
20200805 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
20200870 ACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* * *
20200935 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGAC
131 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
20201000 CATTGTATGAATTTACAAGCCATAAAAATGGCAATT-GCATACAGAAAGATGAAGATGTGCCAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * *
20201064 ACCCACCTACCCCCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCATATTGC-CC
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCC
* ** * * *
20201128 GCCCGCCTGCCCGCTCGTTTCGTCAATTGGCTTAGGCACACGGAGTTCATTCTCAGTCTAAGATT
325 GCCCACCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * *
20201193 GGACCAAACAC-AAGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-CTGATCCC
389 AGACCGGAC-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCC
*
20201256 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTA
452 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * **
20201321 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCTTAGTCTAAGATCGGACCGGA
517 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* ** * * *
20201386 CCGAGGGTTACGATAGCACATG-TGGGCTCGGGCATGTGCTGGTGTCGCATTCTTCTTCGTTGGG
582 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
20201450 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGG
647 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
20201515 GCC-TGGGGGTGCGCGGACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTTGG-CCCC
712 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCC
*
20201578 TATCCCTCATCAAACCTCGAGAACTCAC-CCTGCCCTTAACGAGCATTTGAGATTTTACAGGTTT
776 TATCCCTCATCAAACCTCGAGAACTCACACC--CCCTTAAAGAGCATTTGAGATTTTACAGGTTT
20201642 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
839 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * **
20201704 TGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * * *
20201769 ACGAAGTTTTGGCCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAA-C-TACAAAACATT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTA-AAAA-GTT
** * * * *
20201832 TCAAAAATTATGAAAAACATAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
129 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* **
20201897 ACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACACAGAATATATGAAGATGTGCCT
194 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA-ATATGAAGATGTGCCT
* * * * *
20201962 AAACCCATCTACCACCCTATCGATCGACGGCTTGCGCGTCCCGTCTCTTTGGCCGAC-TAGTGC-
258 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCG
* * * *
20202025 CCGCCCGCCTGTCCACTCGTTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGA
323 CCGCCCACCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * * *
20202090 TCGGATCAGACCAAGGGTTACGGTAGCAGGATCGACAGCGCGTAGCGGGGGACCCGGTCGATCCT
387 TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCC
* * ** * *
20202155 CGGCTTGTGCATCTCGCCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGACATA
452 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * *
20202220 GGCATATGAAATTCATTCCCCGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
517 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * *
20202285 CTGAGGGTTGCAGCAGCATATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGG
582 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
*
20202350 TG-ACCA---T-----CAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATC-GGGG
647 -GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
** *
20202402 GGCC-GGGGGGTGTAAGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCC
711 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
20202466 TATCCCTCATTAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGC
776 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
20202531 TGCCAGTAGCCAATAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCT
841 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20202591 TGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCAAAAAAAAAAATACAAGGATAACGT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC--CAAAAAAAATACAAGGATCACGT
* * *
20202655 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTT
64 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
**
20202720 TCAAAAATCGTGAAAAATAGAAAATTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
129 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
20202785 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
194 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
20202850 AACCCACCTACCACGCTATCGATCCACGGCTTGTGCATCGCGTCTCTCTGGCCGACGTAGTGC-C
259 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGC
* *
20202914 CGCCCGCCTGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
324 CGCCCACCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
20202979 CAGACAGGACCGAGGGTTGCGGCAACAGGATC-ATCAGCACACAGAGGGGGACCCGACCGATCCC
388 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * * * *
20203043 CGGCTTGCGCATCCCACCCCTCTGGTCGACGGAGTGCCCGCATGCTCGTTTCGTGGATTGACTTA
452 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
20203108 GGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
517 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * **
20203173 GCGAGGGTTAC-G--G--CA-GCTGGGCTCAGGCATGTGCTGGTGCTGCATTTCTCTTCACCGGG
582 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
20203232 GCACCATCGTC---G----A----AGAAGCTGATCGACGGCATTGGGG-TCCTACAATCGAGGGG
647 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* *
20203285 GCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
712 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
20203350 ATCCTTCATCAAACCTCGAGAACTCACA-CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCT
777 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
20203414 GCCAGTAGCAAATAAAGTGTCTGAAATGGGG-CTACTTTTTTCAAATGGTCACAAAATCT
842 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
20203473 TGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCACGCTAACAAAAATACAAGGATCATGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
20203538 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
20203603 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
131 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * * * *
20203668 CATTGCATGAATTTACAACCCCTAAAAATGGTATTGGCAGGCAGAAATATGAAGATGTTCGTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
20203733 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGC-CGG
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCG
* * *
20203797 CCCGTCC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
326 CCC-ACCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * *
20203861 GGACAGGACTGAGGGTTGCGGCAACAAGACCGGCAGCATGCAGAGGGGGACCCAACCGATCCCCG
389 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* *
20203926 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGG
454 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
20203991 CATAAGTAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCTGACCGGATC
519 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * *
20204056 AAGGGTTGTGGCAGCAGATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGC
584 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * ** * *
20204121 ACCATCACCGAAGCATCACCGGAGAACCTGAATGGCGGCATTGGGGTT-CTAGCGATCAGGGGGG
649 ACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGG
* * * *
20204185 CCGGGGCGGTGTGTGCGCATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
713 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * *
20204250 TCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTG
778 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
20204315 CCAGTAGCAATTAAAGTGTCAGAAATGGGGACACTTTATTCAAATGGTCACAAAATCT
843 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20204373 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCGAAAAAAATACAAGGATCACGTC
1 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* *
20204438 TACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCT-AACCGTAAAAAGTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTT
** * * *
20204502 TTGAAAATCATGAAAAATA-AAACACGAGTCATCTTGCCATGATACTTCACGTGAAGGCTTAAGG
129 TCAAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
20204566 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
193 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * * *
20204631 AATCCCATCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTTGCCGGAGTAATGC-
258 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCG
* *
20204695 CCG---ATC-GCCTGCTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
323 CCGCCCACCTGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20204755 CATACGGAGT
Statistics
Matches: 8175, Mismatches: 984, Indels: 305
0.86 0.10 0.03
Matches are distributed among these distances:
880 38 0.00
881 736 0.09
882 203 0.02
883 91 0.01
884 2 0.00
885 8 0.00
886 9 0.00
887 405 0.05
888 864 0.11
889 512 0.06
890 468 0.06
891 77 0.01
892 90 0.01
893 824 0.10
894 230 0.03
895 310 0.04
896 507 0.06
897 98 0.01
898 507 0.06
899 635 0.08
900 223 0.03
901 267 0.03
902 1 0.00
903 11 0.00
904 976 0.12
905 82 0.01
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCG
CCCACCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
Found at i:20200461 original size:26 final size:26
Alignment explanation
Indices: 20200425--20200475 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200415 TTGACTTAGG
20200425 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
* *
20200451 CATATGGAGTTCATTTCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20200476 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:20201351 original size:26 final size:26
Alignment explanation
Indices: 20201322--20201374 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20201312 GTTGACTTAG
*
20201322 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
* **
20201348 GCATACGGAGTTAATTCTTAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
20201374 G
1 G
20201375 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:20202251 original size:26 final size:26
Alignment explanation
Indices: 20202221--20202273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20202211 GTTGACATAG
*
20202221 GCATATGAAATTCATTCCCCGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
* *
20202247 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
20202273 G
1 G
20202274 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATGAAATTCATTCCCAGTCTAA
Found at i:20203138 original size:26 final size:26
Alignment explanation
Indices: 20203109--20203161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20203099 ATTGACTTAG
*
20203109 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20203135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20203161 G
1 G
20203162 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20204020 original size:26 final size:26
Alignment explanation
Indices: 20203990--20204042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20203980 GTTGACTTAG
* *
20203990 GCATAAGTAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
20204016 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20204042 G
1 G
20204043 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20204764 original size:26 final size:26
Alignment explanation
Indices: 20204728--20204780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20204718 GTTTGCTTAG
20204728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20204754 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20204780 G
1 G
20204781 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20205483 original size:26 final size:26
Alignment explanation
Indices: 20205454--20205504 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20205444 TTGACTTAGG
*
20205454 CATATGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
20205480 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20205505 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:20206378 original size:26 final size:26
Alignment explanation
Indices: 20206342--20206394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20206332 GTTGACTTAG
*
20206342 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20206368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20206394 G
1 G
20206395 ACTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20207235 original size:26 final size:26
Alignment explanation
Indices: 20207199--20207254 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20207189 TGGGTTGACT
20207199 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
*
20207225 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
20207251 TAAG
1 TAAG
20207255 ATCAGACTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:20208107 original size:26 final size:26
Alignment explanation
Indices: 20208070--20208122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20208060 GTTGACTCAG
* *
20208070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
20208096 GCATACGAAGTTCACTCCCATTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
20208122 G
1 G
20208123 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:20209002 original size:26 final size:26
Alignment explanation
Indices: 20208972--20209024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20208962 GTTGACTTAG
*
20208972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20208998 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20209024 G
1 G
20209025 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20211338 original size:898 final size:896
Alignment explanation
Indices: 20209427--20212268 Score: 4036
Period size: 901 Copynumber: 3.2 Consensus size: 896
20209417 TTGGGACCGT
* * *
20209427 AAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
20209492 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATGCAAAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * * *
20209557 TGTGTCTAAACCCACCTACCACCGTATCAATCCACCGCTTGCGCATTCCGTCTCTCTGGCCGGTG
131 TGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * ** *
20209622 TAGTGCCCGCCCACCCACCCGCTCGTTTCATCGACCGGCTTAGGCATATGGAGTTCATTCCCAGT
196 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** ** * *
20209687 CTAAGATCACACCAGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACC
260 CTAAGATCAAACCAGAATGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACC
** * * * * *
20209752 GATCATCGGCTTGTGCATCCCACCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTT
325 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTT
* * * *
20209817 GACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATGGG
390 GACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* ** *
20209882 ACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCATGTGCTAATGCTACATTTTTCTTC
454 ACCGGACCGAGGGTTGCGACAGCACATGCT-GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTC
* * * * * * *
20209947 GTCAGGGCACCATCGTCGGAGCATCGTCGAAGAACTTGACTGGCGGCACTGGGGTTCGGACGATC
518 GCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-
* * *
20210012 GGGGGGGTCGGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTG
582 TGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
*
20210077 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
646 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
* * *
20210142 GTTTACTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACC
711 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
20210207 TTGTACACTTCAAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCATGTC
776 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
* *
20210272 TACCAAGTTTGGGGCCAAAAC-TCATT-TCGAAAAAATTTTAAAAAATCTCGAACCGC
841 TACCAAGTTTGGGGCCAAAACTTC-TTCT-GAAAAAATTTTAAAAAATCCCGAACCTC
* * * * *
20210328 AAAAAGTTTCGAAAATCGTGAAAAATTGAAAACGAGTCGACTTGCCATGAAACTTCACGTGCAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * **
20210393 CTTAAGTGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
*
20210458 TGTGACTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
20210523 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
196 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * *
20210588 CTAAGATCAAACCAGATTGAGGGTTGCAGCAGTAGGATCAACATCACGCAGAGGGGGACTCGGCC
260 CTAAGATCAAACCAGAATGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACC
*
20210653 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTT
325 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTT
*
20210718 GACTTAGGCATAGGCAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGG
390 GACTTAGGCATAGG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
20210783 ATCGGACCGAGGGTTGCAACAGCACATGCTGGCCTCGGGCATGTGCTGGTACCGCATTTTTCTTC
454 ACCGGACCGAGGGTTGCGACAGCACATGCTGG-CTCGAGCATGTGCTGGTGCCACATTTTTCTTC
*
20210848 GCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATT
518 GCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATT
* * *
20210913 AGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATACTGGC
583 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
** * **
20210977 CCCCTATCCCTCATCAAACCTTGACAACTCACACCCCTTTAAAGAGTTTTTGAGATTTTACAGGT
648 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGT
20211042 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
713 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
20211107 GTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACACGGATCACGTCTA
778 GTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
*
20211172 CCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAATCCCGAACCTC
843 CCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAACCTC
* *
20211226 AAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20211291 CTTAAGGGACCATTGTATGAATTTTCAAGGCATAAAAATGGCATTGGCATGCAGAAATGTGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
20211356 TGT-ACCTAAACCCACCTACCACCCTATCGGTCCACGGCCTGCGCGTGCCGTCTCTCTGGCCGGC
131 TGTGA-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* ** *
20211420 ATAGT----GCCCGCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
195 GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAG
*** * * * * * *
20211481 TCTAAGATTGGACCAAACCAT-A-GGTTACAGTAGTAGGATCGGTAGCACGTATAGGGGGACCCG
259 TCTAAGATCAAACCAGA--ATGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
* * *** * * * *
20211544 ACCGATCCCTGGCTTGCGCATCTCGCATGTCTGGCTGGCTGAG-TGCCTGCACGCTCGTTTCAAG
322 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCT-CCCGCACGCTCGTTTCATG
* ** * *
20211608 GGTTTACTTAGGCATACGGAGTTCATTTGCAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGA
386 GGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
20211673 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCCACATTTTT
450 TCGGACCGGACCGAGGGTTGCGACAGCACATGCTG-GCTCGAGCATGTGCTGGTGCCACATTTTT
* * ** * * *
20211738 CTTCGCCAGGGTACAATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGGC
514 CTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
20211803 GATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATA
579 GATTGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
*
20211868 TTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
643 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
* *
20211933 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGCCACAAA
708 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
20211998 ATCTTGTACACTTTAAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCGC
773 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* *
20212063 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTC
838 GTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAACCTC
*
20212122 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
20212187 CTTAAGGGACCATTCTATGAA-TTAGCAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAG
66 CTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
20212251 ATGTG-CTTAAACCCACCT
130 ATGTGAC-TAAACCCACCT
20212269 CATCCTGCCC
Statistics
Matches: 1734, Mismatches: 191, Indels: 37
0.88 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 327 0.19
895 8 0.00
896 417 0.24
897 1 0.00
898 451 0.26
899 10 0.01
900 8 0.00
901 510 0.29
902 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAAACCAGAATGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGACAGCACATGCTGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCC
AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAACCTC
Found at i:20211666 original size:26 final size:26
Alignment explanation
Indices: 20211619--20211671 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20211609 GTTTACTTAG
* ** *
20211619 GCATACGGAGTTCATTTGCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20211645 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20211671 G
1 G
20211672 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20213367 original size:26 final size:26
Alignment explanation
Indices: 20213337--20213392 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20213327 TGAGTTGACT
*
20213337 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
20213363 TAAGCATACGAAGTTCATTCCCTGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
20213389 TAAG
1 TAAG
20213393 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:20215176 original size:26 final size:26
Alignment explanation
Indices: 20215140--20215192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20215130 GTTGACTTAG
*
20215140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
20215166 GCATAAGGAGTTCATTGCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20215192 G
1 G
20215193 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20215271 original size:895 final size:888
Alignment explanation
Indices: 20212465--20215318 Score: 3883
Period size: 901 Copynumber: 3.2 Consensus size: 888
20212455 GTTGACTTAG
* * * ** *
20212465 GCATACAGCGTTCATTCCCAATCTAAGCATACGGAGTGGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGATCGAGGGTTGCGGCAGCACATGCTG
*
20212530 GGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCA-CTGGGGCACCATCAC-GGGAGCATCGCCG
64 GGCTCGGGCATGTGCTGGTGCCT-ATTTTTCTTCATC-GGGGCACCATCACTCGGAGCATCGCCG
* * *
20212593 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGTCGGGGG-GTGTGCGCACATGA
127 GAGAACCTGACCGGCGGCATTAGGGTTCCG-CGATCGGAGGGGCCGGGGGCGTGTGCGCACATGA
*
20212657 TGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAAC
* *
20212722 TCACACACCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
256 TCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
20212787 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
20212852 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAAATCCTTCCGA
385 TTTGTGCATGCCAACAAAAATAC-AGGATCACGTCTAACAAGTTTGGGGCC-AAAATCCTTCCAA
* * *
20212917 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
448 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
20212982 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20213047 GGCTTTGGCACTCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCACT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
* * * *
20213112 TGCGCATCCCGTCTCTTTGGCCGGTGTAGTGGCCGCCCGCCTGCCCGCTCATTTCGTCAGTTGGC
642 TGCGCATCCCGTCTCTATGGCC-G-G-CGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCAG-TGGC
* * *
20213177 TTAGGCATACTGAGTTCATTCCTAGTCTAAGATTAGACC-AGACCGAGGGTTGTCGCAGTAGGAT
703 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGA-ACCGAGGGTTG-CGCAGCAGGAT
* * * * ** *
20213241 TGGCAGCACATAGAGGGGGACCCGACCAATCCTCGACTTACGCATCCATCCCCTCTGGCCGGCTG
766 CGGCAGCACA-A-AGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTG
* * *
20213306 AGCGCCCGCACGTTCATTTCATG-A-GTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
829 AGCGCCCGCACGCTCGTTT--TGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20213366 GCATACGAAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20213431 CTCGGGCATGTGCTGGTGCCGCTTTTTTTCTTCATCGGGGCACCATC-GTCGGAGCATCGCTGGA
66 CTCGGGCATGTGCTGGTG-C-CTATTTTTCTTCATCGGGGCACCATCACTCGGAGCATCGCCGGA
* * * *
20213495 GAACCTGATCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGCGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTAGGGTTCC-GCGATCGGAGGGGCCGGGGGC-GTGTGCGCACATGAT
*
20213559 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACT
20213624 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
20213689 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACTCTTCGATTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
20213754 TTGTGCATGCCAACAAAAATACCAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAA
386 TTGTGCATGCCAACAAAAATA-CAGGATCACGTCTAACAAGTTTGGGGC-CAAAATCCTTCCAAA
* * *
20213819 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAATAAA-AGAAAACAAGTCG
449 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA-AAATAGAAAACGAGTCG
20213883 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCG-CCATTGTATGAATTTACAAGCCATAAAAA
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAA
*
20213947 TGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGG
577 TGGCATTGGCACT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
* * *
20214011 CTTGTGCATCCCGTCTCTATGGCCGACGTAGTGCCCGCCCGTCCGCCTGCCCGCTCGTTCCGTCA
640 CTTGCGCATCCCGTCTCTATGGCCGGCGT-G-G-CCGCCCG--C-CC-GCCCGCTCGTTTCGTCA
* *
20214076 GTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGAA-CGAGGGTTGCGACAG
698 GT-GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACC-GAACCGAGGGTTGCG-CAG
* **
20214140 CAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCCAGC
760 CAGGATCGGCAGCACA-A-AGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
* * * * * * *
20214205 CGGTAGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCTCAATCTA
823 CGGTTGAGCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20214270 A
888 A
* * * * *
20214271 GCATACGGAGTTCATTCCCATTCTCAGATC-AAGCCAGATCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCACATGCTGG
** *
20214335 GCTCGGGCATGTGCTGGTGACGC-ATTTTTCTTCGCCGGGGCACCATCACT-GGAGCATCGCCGA
65 GCTCGGGCATGTGCTGGTG-C-CTATTTTTCTTCATCGGGGCACCATCACTCGGAGCATCGCCGG
* * *
20214398 AGAAGCTGACCGGCGGCATTAGGGTTCCAGCGATCGAAGGGGCCGAGGGGCGTGTGCACACATGA
128 AGAACCTGACCGGCGGCATTAGGGTTCC-GCGATCGGAGGGGCCG-GGGGCGTGTGCGCACATGA
* * * * *
20214463 TGTGCGATGGGTGCAGGTACGTGGCCCTTATATTGG-CCCTTTATTCCTCATCAAACATCGAGAA
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCC-CTATCCCTCATCAAACCTCGAGAA
*
20214527 TTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
20214592 AAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
20214657 TTTGTGGAAGCCAACAAAAATACAGGGATCACGTCTAAGAAGTTTGGGACCAAAACCCTTCCAAA
385 TTTGTGCATGCCAACAAAAATACA-GGATCACGTCTAACAAGTTTGGGGCCAAAATCCTTCCAAA
* * * *
20214722 AAAATTTCAAAAAATCCCGAACCGGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGT
449 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
20214787 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20214852 GCATTGGCACATAGAAATATGAAGATGTGCATAAACCCACCGACCACCCTAAT-GATCTATGGCT
579 GCATTGGCAC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCATGGCT
* * * * **
20214916 TGCGCATCCCATCTCTCTGGCCGGCGTGG-TGCCCGCCCGCCCGTTCGTTTTATCAGCTGGCTTA
642 TGCGCATCCCGTCTCTATGGCCGGCGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCAG-TGGCTTA
* * * *
20214980 GGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGC
706 GGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGC-GCAGCAGGATCGGC
* ** * *
20215045 AGCATGCAAAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGGG
770 AGCA--CAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCG
20215110 CCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20215166 GCATAAGGAGTTCATTGCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* **
20215231 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCATCA-TCGGAGCATCGTTGGAG
66 CTCGGGCATGTGCTGGTGCC-TATTTTTCTTCATCGGGGCACCATCACTCGGAGCATCGCCGGAG
20215295 AACCTGACCGGCGGCATTAGGGTT
130 AACCTGACCGGCGGCATTAGGGTT
20215319 TTTAGCTGAT
Statistics
Matches: 1735, Mismatches: 172, Indels: 98
0.87 0.09 0.05
Matches are distributed among these distances:
893 1 0.00
894 5 0.00
895 304 0.18
896 6 0.00
897 3 0.00
898 2 0.00
899 61 0.04
900 78 0.04
901 484 0.28
902 10 0.01
903 210 0.12
904 237 0.14
905 327 0.19
906 6 0.00
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCTATTTTTCTTCATCGGGGCACCATCACTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTAGGGTTCCGCGATCGGAGGGGCCGGGGGCGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAGGATCACGTCTAACAAGTTTGGGGCCAAAATCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
CGTCTCTATGGCCGGCGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCAGTGGCTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGCAGCAGGATCGGCAGCACAAAGGG
GGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGT
TTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20216724 original size:26 final size:26
Alignment explanation
Indices: 20216688--20216740 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20216678 GTTGACTTAG
20216688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20216714 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20216740 G
1 G
20216741 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20217562 original size:894 final size:895
Alignment explanation
Indices: 20215316--20222335 Score: 8228
Period size: 894 Copynumber: 7.9 Consensus size: 895
20215306 CGGCATTAGG
* * * *
20215316 GTTTTTAGCTG-ATTTTTTTGTGCAACCCAACAAAAATACGAGGATCATGTCTACCATGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
20215380 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTCGAAAATCGTGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* * *
20215445 AAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAC
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
20215510 TTACAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
20215575 CCTATCGTTCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGAGTAGTGCCCCCCGCCCACCCGCT
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-GTAGTGGCCCCCGCCCGCCCGCT
* * * * * * ***
20215640 CGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCAGTCCCAATCTAAGATCAGATCGGATTGAGGG
324 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * * * * * *
20215705 CTGCGGCAGTAGGACCGACAGCATGCAGACGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCG
389 TTGCAGCAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGATCGATCCCCGACTTGCGCATCCCG
* *
20215770 CCCCTCTGGCCGGCTGCGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
453 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
20215835 TCCCAGTCTAAG-AT-C-G-G---------A--C-AA-A----ACC-G----AGGGTTACGGTAG
518 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTACGGTAG
*
20215874 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTA--GA
583 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-C-ACGGA
** * * * ** *
20215937 GCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCAGAGATTGGGGGGCTAGGGGGTGTGCG
646 GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCA
*
20216002 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCT
711 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
20216067 CGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAA
776 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* ** * *
20216132 GTCTCTGAAATGGGGACACCATTTTCCAATGGTCACAAAATCTTGTACACTTTGA
841 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * * * * *
20216187 GTTTTTATCTTAAGTTTTTTGTCCATGCCAAAAAAAATGCACGGATCACCTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * ** **
20216252 GCCAAAACTCCTTCCAAAAAAATTTCAAAAATTCCCAAACTACAAAAAGTTTCAAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* *
20216317 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
20216382 TTACAAGCCAAAAAAATGGCATTGGCACT-CACAAATATGAAGATGTGCCTAAACCCACCTACCA
196 TTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** * *
20216446 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGCC-G-ACGTGGTGCCCGCCCGTCCGTT
260 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTA-GTGGCCCCCGCCCGCCCGCT
* ** *
20216509 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTGGTAC-AAGATCAGACCAGACCGAGG
324 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCAAGG
* * * * * *
20216573 GTTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCTGGTCGATCCTCGACTTGCGCATCCCG
388 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCG
* ** * * *
20216638 CCCCTTTGGCCGGTTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
453 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
20216703 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGGTAG
518 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTACGGTAG
*
20216768 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCACGGAGC
583 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCACGGAGC
* * * * *
20216833 ATCGCTAGAGAACTTGATCGACGGCATT-GGGTTCTAGCGATCGGGGGTGCCGGGGGGCGTGCAC
648 ATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGG-GCCGGGGGGTGTGCAC
* * *
20216897 ACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCACCAAACCTC
712 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
20216962 AAGAATTTACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAG
777 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
20217027 TGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
842 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
20217081 GTTTTTAGCTGAATTTTTTTGTGGAAGCCAAAAAAAATACAAGGATCACGTCTAAGAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * **
20217146 ACCAAAACCCCTTCCGAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* *
20217211 AAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
20217276 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
20217341 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGT-GTGGTCCCCGCCCACCCGCTCG
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTAGTGGCCCCCGCCCGCCCGCTCG
* *
20217405 TTTCATCAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCATA-GGT
326 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGT
* * *
20217469 TACAGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCC
390 TGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCC
* * *
20217534 CTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTC
455 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * * *
20217599 CCAGTCTAAGCAGATGGAGTTCGTTCCCAGTCTAAGATCGGACCATACCAAGGGTTACGGCAGCA
520 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTACGGTAGCA
* * ***
20217664 CATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCAT
585 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCACGGAGCAT
* * * * * * *
20217729 TGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGAGCCAGGGGGTGTGCGCACA
650 CGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACA
* * * *
20217794 AGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCACACCTCCAG
715 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
*
20217859 AACTCACA-CCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
780 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
20217923 CTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTAGACTTCGA
845 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* ** * * * * *
20217974 GTTTTCTA-CTGAATTTTTTTATGCATTCCAACAAAAATACGAGGATAACATCTACCTAGTTTAG
1 GTTTT-TAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
20218038 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTT-AGAAATCGTG
65 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGA-AAATCATG
*
20218102 AAAAATAAAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
129 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
20218166 ATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
194 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
20218231 ACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGACCACCCGTCC
259 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG--TAGTG---G-CC-CCCGCCC
* * *
20218296 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCAGA-CTGA
317 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-
* ** * * * * * *
20218360 ATCAAGGGTTGCAATAGTAGGATCAGTAGCACGTAGACGGGGACCCGATCGATCCCC-AGCTTAC
381 ACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGA-CTTGC
* ** *
20218424 GCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACG
445 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
20218489 GAGTTCATTCCTAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATC-AAGCC-GAATGAAGG
510 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAG-ATCAAGG
* * * **
20218552 GTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCA
573 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
** * ** *
20218617 TCGTCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCTTGCGATCGGGGGGGCCCGA
638 TCCACGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATC-GGGGGG-CCGG
* * * *
20218682 GGGGTGTGCGCACTTGATGTGCGATGGCTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCT
701 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
20218747 CATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
766 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
20218812 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGA
831 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
20218877 GTTTTTAGCT-AATTTTTTTGTGCAAGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * ** * * * *
20218941 GCGAAAACTCTTTTCGAAAAAATTTAAAAAAATCTTAAACTGTATAAAGTTTTGAAAATCGTGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* *
20219006 AAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAC
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
20219071 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATCTGCCTAAACCCACCTACCAT
196 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * ** * *
20219136 CCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCTGG-CGTGGTGCCCACCCGCCCGTTCG
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTAGTGGCCCCCGCCCGCCCGCTCG
* * * *
20219200 TTTCATCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCAAAGATCAGACTAGACCAAGGGTT
326 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
* * ** *
20219265 GCAACTGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
391 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCC
* * * * *
20219330 CTCTGGCCGACTGAGCACTCACACGTTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCA-T--
456 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * **
20219392 ---TC----C---C--AG-----T--C--TC-AA-ATCGGACCAGA-CTGAGGGTTACGGAATAA
521 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-AAGGGTTACGGTAGCA
* * ** * * *
20219433 CATGCTGGGCTTGAGCATGTGCTGGTATCGTATTTTTCTTCGCCGAGGCACCAT-CACTGGAGCA
585 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCAC-GGAGCA
*
20219497 TCGTC-GAAGAACCTGACC-AGCGGCATTGGGGTTCCAGCGATCGGCGGGGCCGGGGGGGGTGTG
649 TCGCCAG-AGAACCTGACCGA-CGGCATTGGGGTTCCAGCGATCGG-GGGGCC--GGGGGGTGTG
*
20219560 CACACATGATGTGC-AGTGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
709 CACACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
20219624 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
773 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
20219689 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
838 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
20219747 GTTTTTAGCTAAATGTTTTTGTGAAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** *
20219812 GTAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* *
20219877 AAATAGAAAACGAGTCATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
20219942 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * *
20220007 CCTATCGATCCGTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCTC
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-GTAGTGGCC-CCCGCCCG--C-C
* * *
20220072 GCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGACC-GAA
320 -CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAG-A
* * * * * * *
20220135 TCAAGGGTTGCAGCAGCATGATCAGCAGCACACAGTGGGGGACCCGACCGATCCTCGACTTGCGC
382 CCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
* * * *
20220200 ATCCCACCCCTCTGGCCGACTGAGTGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGA
447 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
20220265 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCGGA-CTGAGGGT
512 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGATC-AAGGGT
* * * * * *
20220328 TTCGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGACGTATTTTTCTTCATCGGGGCACCATC
575 TACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * **
20220393 GC-CGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCC-GACGGCCGGGGGGCCGACG
640 -CACGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGCCG--G
* *
20220456 GGGTGTGCGCACAAGATGTGTGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
701 GGG-GTGTG--C---A------CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * *
20220521 ACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGGGCATTTAAGATTTTACAGG
754 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
20220586 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGAC-TTTTTCAAATGGTCACAAAATCT
819 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
20220650 TGTACACTTCGA
884 TGTACACTTCGA
* * * *
20220662 TTTTTTAGCTGAATTTCTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
20220727 GCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* * * * *
20220792 AAATAGAAAACGAGTCATTTTGCCATGAAACGTCACGCGAAGGCTTAAGGGACCATTGTGTGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
20220857 TTGCAAGCCATAAAAATGGCATTGGC-TCTCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
196 TTACAAGCCATAAAAATGGCATTGGCATGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
20220921 CCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCG
260 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-GTAGTG---G-CC-CCCGCCCG
* ** * **
20220986 CCTGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGACTGGAC
318 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
20221051 TGAA-GGTTGC-GACAGCAGGATCAGCACCACTCAGAGGGGGACCCGGTCGATCCTCTG-CTTGC
383 -CAAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-CCGACTTGC
* * *
20221113 GCATCCCGCCCCTCTGGCCAACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACG
445 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
20221178 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGCATACAGAGTTCATTCCTA
510 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C--
**
20221243 GTCTAAGATCAGACCTGACCAATGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGAT
563 --C--AGATCA-A---G------GGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
20221308 GCATTTTTATTCGTCGGGGCACCAT--------CATCG-C--AGAACCTAACCTG-CGGCATTGG
614 GCATTTTTCTTCGTCGGGGCACCATCCACGGAGCATCGCCAGAGAACCTGACC-GACGGCATTGG
* * * * * *
20221361 GGTTCC-GACGGTCGGGGGGGTCGGCGGGGTGTGCACTCATGATTTGCAATGGGTGCTTGTACTT
678 GGTTCCAG-CGATC-GGGGGGCCGG-GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
* *
20221425 GGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGGGCATT
740 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * * *
20221490 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCTGAAGTGGGGACACTTTTTTCAAC
805 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
20221555 TGGTCACAAAATCTTGTACACTTCGA
870 TGGTCACAAAATCTTGTACACTTCGA
* * * *
20221581 GTTTTTAGCTGAATTTTTTTGTGCACGCGAACAAAAATACAAGGATCACATCTACCAAGTTTAGG
1 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
20221646 GCTAGAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACAGCGAAAAGTTTTGAAAATCATGAA
66 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
* *
20221711 AAATAGAAAACGAGACGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
20221776 TTACAAGCCATAAAAATAGCTTTGGCATGGAGAAATATGAAGATGTACCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
20221841 GCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCAACGTAGT-------GCCCGCCCGCT
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC--GGTAGTGGCCCCCGCCCGCCCGCT
* ** * *
20221899 CGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGG
324 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * *
20221964 TT------------TCGGCAGCACGCAGAGGGGGACCC-ATTCGATCCCCGACTTACGCATCTCA
389 TTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCG
* * * *** *
20222016 CACCAT-TGGCCGACTGAGCGCTCGCACGCTCGTTTCATAATTTGACTTGGGCATACGGAGTTCA
453 C-CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * * * *
20222080 TTCCCAATCTAAGCATACAGAGTCCATTCCTAATCTAAGATCGGACCGGATCGAGGGTTGCGGCA
517 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTACGGTA
* * * *
20222145 GAACATGCTGGGCTTGGGCATATGCTGGTGCCGTATTTTTCTTCGTCGGTGG-ACCAT------A
582 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GGCACCATCCACGGA
* * * * *
20222203 G--TCG---GAGAACCTGACTGACAGAATTGGGGTTCCAGTGATC-----G--GGGGGG-CTG--
646 GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCA
** * * *
20222253 CACATGATGAACGATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCCCACATCAAACCG
711 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-
*
20222318 T-GAGAACTCACACCCCCT
775 TCAAGAACTCACACCCCCT
20222336 CATTTCGTCA
Statistics
Matches: 5340, Mismatches: 625, Indels: 382
0.84 0.10 0.06
Matches are distributed among these distances:
857 70 0.01
858 1 0.00
859 2 0.00
860 4 0.00
861 2 0.00
863 1 0.00
868 112 0.02
869 285 0.05
870 206 0.04
871 272 0.05
872 256 0.05
873 3 0.00
874 3 0.00
875 9 0.00
877 1 0.00
878 4 0.00
879 168 0.03
880 3 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 5 0.00
888 1 0.00
889 6 0.00
890 1 0.00
891 1 0.00
892 152 0.03
893 241 0.05
894 957 0.18
895 317 0.06
896 4 0.00
897 1 0.00
898 1 0.00
899 7 0.00
900 330 0.06
901 6 0.00
902 198 0.04
903 258 0.05
904 13 0.00
905 109 0.02
906 6 0.00
907 71 0.01
910 1 0.00
914 2 0.00
915 517 0.10
916 147 0.03
917 5 0.00
918 136 0.03
919 316 0.06
920 2 0.00
924 1 0.00
925 1 0.00
927 1 0.00
929 6 0.00
930 33 0.01
931 11 0.00
932 3 0.00
933 4 0.00
935 1 0.00
941 60 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTAGTGGCCCCCGCCCGCCCGCTCG
TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCC
CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTACGGTAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCACGGAGCATC
GCCAGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
Found at i:20218518 original size:26 final size:26
Alignment explanation
Indices: 20218482--20218534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20218472 GTTGACTTAG
* *
20218482 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
20218508 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
20218534 G
1 G
20218535 ATCAAGCCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:20220286 original size:26 final size:26
Alignment explanation
Indices: 20220256--20220308 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20220246 GTTGACTTAG
20220256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20220282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20220308 G
1 G
20220309 ATCAGGCCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20220480 original size:13 final size:13
Alignment explanation
Indices: 20220459--20220490 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
20220449 GCCGACGGGG
20220459 TGTGCGCACAAGA
1 TGTGCGCACAAGA
*
20220472 TGTGTGCACAAGA
1 TGTGCGCACAAGA
20220485 TGTGCG
1 TGTGCG
20220491 ATGGGTGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (13 bp):
TGTGCGCACAAGA
Found at i:20221210 original size:26 final size:26
Alignment explanation
Indices: 20221174--20221249 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
20221164 GACTTAGGCG
20221174 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
20221200 TACGGAGTTCATTCCCAGTCTGAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
20221226 TACAGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20221250 ATCAGACCTG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20222096 original size:26 final size:26
Alignment explanation
Indices: 20222066--20222118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20222056 TTTGACTTGG
* *
20222066 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTCCATTCCCAATCTAA
*
20222092 GCATACAGAGTCCATTCCTAATCTAA
1 GCATACAGAGTCCATTCCCAATCTAA
20222118 G
1 G
20222119 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAATCTAA
Found at i:20222645 original size:159 final size:159
Alignment explanation
Indices: 20222350--20222701 Score: 472
Period size: 159 Copynumber: 2.2 Consensus size: 159
20222340 TCGTCAATTG
* ** * *
20222350 GGCTTAGGCATATGGAGTTCATTCTGAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGG
1 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
** * * * * * * *
20222415 ATTGGCAGCACGCAGAAGGGGACCCAGCTGATCCCTGTCTTGTGCATCTCGCCCTTCTGGCCGGT
66 ATCCGCAGCACACAGAAGGGGACCCAACTGATCCCCGGCTTATGCATCTCACCCTTCTGGCCGGC
* *
20222480 TGAGCACCCGCACGCTCGTTTCATCGGTT
131 TAAGCACCCGCACGCTCATTTCATCGGTT
* *
20222509 GGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGG
1 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
* *
20222574 ATCCGTAGCACACAGAGGGGGACCCAACTGATCCCCGGCTTATGCATC-CTACCCTTCTGGCCGG
66 ATCCGCAGCACACAGAAGGGGACCCAACTGATCCCCGGCTTATGCATCTC-ACCCTTCTGGCCGG
* *
20222638 CTAAGCACCCGCACGCTCATTTCGTGGGTT
130 CTAAGCACCCGCACGCTCATTTCATCGGTT
* *
20222668 GACTTAGGCATACGGAGTTCTTTCCCAGTCTAAG
1 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20222702 CATACGGAGT
Statistics
Matches: 167, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 1 0.01
159 166 0.99
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
ATCCGCAGCACACAGAAGGGGACCCAACTGATCCCCGGCTTATGCATCTCACCCTTCTGGCCGGC
TAAGCACCCGCACGCTCATTTCATCGGTT
Found at i:20222711 original size:26 final size:26
Alignment explanation
Indices: 20222675--20222727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20222665 GTTGACTTAG
**
20222675 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20222701 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20222727 G
1 G
20222728 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:20223600 original size:25 final size:26
Alignment explanation
Indices: 20223566--20223617 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20223556 GTTGACTTAG
20223566 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20223591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20223617 G
1 G
20223618 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20225016 original size:874 final size:873
Alignment explanation
Indices: 20222492--20225238 Score: 3279
Period size: 890 Copynumber: 3.1 Consensus size: 873
20222482 AGCACCCGCA
* *
20222492 CGCTCGTTTCATCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * *
20222557 AGGGTTGTGGCAGCAGGATCCGTAGCACACAGAGGGGGACCCAACTGATCCCCGGCTT-ATGCAT
66 AGGGTTGCGGCAGCA--A--C---G----CAGAGGGGGACCCAGCCGATCCACGGCTTGA-GCAT
** * * *
20222621 CCTACCCTTCTGGCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
119 CCCGCCCCTCTGGCCGACTGAGCACCCGCACG--C--TTC---GGTT-A-TT--G-ATA-GGAGT
* * ** * * * *
20222686 TCTTTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATC-GAATTGGACCGA-GGGTT-
171 TCATT---A-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGACAGATTC
* * * * * ** * * * *
20222748 GCAGCAGCACATACTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCA
231 G-A-CAACACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGAACCATCG
* ** ** * * *
20222813 TCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGG
294 CCAAAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCC--GGGG
* ** * * *
20222878 GTGTGCGCACATGATGTGCGAAAGGTGCTGGTACTTGGCCCATATATTTGCCCCCTATCCCTCAT
357 GTGTGCGCACATGATGTGTGATGGGTGCAGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCAT
*
20222943 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
422 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * ** *
20223008 CATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCCAGTT
487 CATTAAAGTGTCTGAAATGGGGACA-CTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTT
* * ** *
20223073 TTTAGCTGAATTTTTTTGTGCCTGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGTTCC
551 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
* * *
20223138 AAAACTCCTTCTGAAAAAATTTTAAAAAATACCGAATTGTAAAAA-TTTCAAAAATCGTGAAAAA
616 AAAACTCCTTCCGAAAAAATTTTAAAAAATACTGAATTGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
20223202 TAGAAAACGAGTCGTCTTGCAAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
681 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
20223267 CAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
746 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ***
20223332 ATCGATCCACAGCTTGCGTATCCCGTCTCTCTAGCCGACGTAGTGTTTGCCTGCCCGCCCACC
811 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGCCCACC
* * * * * *
20223395 CGGTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
20223460 AGGGTTGCGGCAGC-ACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCGTCCCGCCCCTCTG
66 AGGGTTGCGGCAGCAACGCAGAGGGGGACCCAGCCGATCCACGGCTTGAGCATCCCGCCCCTCTG
* *
20223524 GTCGACTGAGCGCCCGCACGCTTGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCAATCT
131 GCCGACTGAGCACCCGCACGC----TTC---GGTT-A-TT--G-ATA-GGAGTTCATT---ATCT
* * *
20223589 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGACAGATTCGGCAGCACATGCTG
180 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGACAGATTCGACAACACATGCTG
* * * ** ***
20223654 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATTGTCGGA
245 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGAACCATCGCCAAAGCATCACCGGA
* *
20223719 GAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGATGGGGTGTGCGCACGTGATG
310 GAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCG--GGGGTGTGCGCACATGATG
* * *
20223784 TGTGATGAGTGCCGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTC
373 TGTGATGGGTGCAGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
20223849 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
438 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
20223914 ATGGGGACACTTTTTTCAAAT-GTTCACAAAATCTTGTACACTTCGA-TTTTTCAGCTGAATTTT
503 ATGGGGACAC-TTTTTCAAATGGTT-ACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTT
* * ** * *
20223977 TTTGCGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCTAAAAATCCTTCCAA
565 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGA
* ** * * *
20224042 AAAAATTTTAAAAAATCCTGAACCGCATAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAGTCG
630 AAAAATTTTAAAAAATACTGAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
20224107 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
695 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20224172 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCT
760 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
20224237 TACGCATCCCGTCTCTCTGGTCGACCTAGTGCCCGCCCGCCCGCCCTCC
825 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGCCCACC
** * *
20224286 CATTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
20224351 AGGGTTGCGGCAGCAGGATCGATAGCATGTAGAAGGGGACCC-GACCGATCCACGGCTTGAGCAT
66 AGGGTTGCGGCAGCA--A-C----GCA-G-AG--GGGGACCCAG-CCGATCCACGGCTTGAGCAT
** * * * *
20224415 CTTGCCCCTCTGGCCGGCTGAGCACCTGCACGC-TC-GTT-TT-AT-GG-GTTGA-T-T-TAGGC
119 CCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTTCGGTTATTGATAGGAGTTCATTATCTAAGC
* * ** * *
20224471 ATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGGCTGA-GGGTTGCGACAACACATGCTGGGC
184 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGACAGATT-CGACAACACATGCTGGGC
** * * * * *
20224535 TCTTGCTTGTGCT-GTGTCATATTTTTCTTTGCCGGGGAACCATCGCCAAAGCATCACCGGAGAA
248 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGAACCATCGCCAAAGCATCACCGGAGAA
** * * *
20224599 CCTGACCGACGATGTTGGGGTTCCGGCAATCGAGGGGGTCGGGGGTGTGCGCACATGATGTGTGA
313 CCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGTGA
* * *
20224664 TGGGTGCAGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACC
378 TGGGTGCAGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
20224729 CCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGG
443 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
20224794 GACACTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
508 GACACTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
20224859 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTT
573 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTT
*
20224924 TAAAAAAT-CTGGAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
638 TAAAAAATACT-GAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
20224988 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTG
702 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
20225053 GCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
767 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
20225118 CCCGTCTCTCTGGTCG-CGTAGTGCCCGCCTGCCCACCCGCC
832 CCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGCCCACC
* **
20225159 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGACTAGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
20225224 AGGGTTGCGGCAGCA
66 AGGGTTGCGGCAGCA
20225239 CTTGCTGGGC
Statistics
Matches: 1624, Mismatches: 191, Indels: 88
0.85 0.10 0.05
Matches are distributed among these distances:
873 96 0.06
874 302 0.19
875 157 0.10
877 77 0.05
878 65 0.04
879 1 0.00
883 1 0.00
884 4 0.00
885 2 0.00
887 2 0.00
888 1 0.00
889 8 0.00
890 410 0.25
891 358 0.22
892 1 0.00
894 4 0.00
895 2 0.00
898 3 0.00
899 3 0.00
900 2 0.00
901 2 0.00
902 1 0.00
903 122 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCAACGCAGAGGGGGACCCAGCCGATCCACGGCTTGAGCATCCCGCCCCTCTG
GCCGACTGAGCACCCGCACGCTTCGGTTATTGATAGGAGTTCATTATCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGAACTGACAGATTCGACAACACATGCTGGGCTCGGGCATGTGCT
GGTGCCACATTTTTCTTCGCCAGGGAACCATCGCCAAAGCATCACCGGAGAACCTGACCGACGAC
ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGTGATGGGTGCAGGTAC
TTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAA
ATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATACTGA
ATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
CGACGTAGTGCCCGCCTGCCCGCCCACC
Found at i:20227025 original size:26 final size:26
Alignment explanation
Indices: 20226996--20227048 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20226986 GTTGACTTAG
*
20226996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20227022 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20227048 G
1 G
20227049 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20228761 original size:26 final size:26
Alignment explanation
Indices: 20228725--20228777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20228715 GTTGACTTAG
20228725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20228751 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20228777 G
1 G
20228778 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20233171 original size:26 final size:26
Alignment explanation
Indices: 20233135--20233187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20233125 GTTGACTTAG
*
20233135 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20233161 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20233187 G
1 G
20233188 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20234055 original size:906 final size:904
Alignment explanation
Indices: 20229639--20245338 Score: 17471
Period size: 899 Copynumber: 17.8 Consensus size: 904
20229629 AGGCACACGG
* *
20229639 AGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAACACATGCTGGGCACGGGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
20229703 ATGTGCTGGTGCCGTATTTATCTTCATCGGGGCAGCATCGACGGAGCATCGTCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
20229768 TGGCGGCATTAGGGTTCCGACGATTGGGGGGGTCGGGGGGGTATGCGCACATGATGTGCTATGGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
20229833 TCCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-GAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
20229897 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
20229962 C--TTTTCAAATGGTCACGAAATCTTGTACACTTCTAG-TTTGAGCTGAATTTTTTTGTTGCAAG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATG
** * ** * *
20230024 TGAAC-AAAATACAAGGATCACGTCTAGCATCTTTGGGGCCAAAAATCCTTTCAAAAAAATTTT-
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * *
20230087 TAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
20230152 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTAGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
20230217 TGCA-AAGATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
583 TGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
20230281 CGTCTCTCTGGTCGGCGTAGTGCCAG--C-CCGCCTGCCCG--TCCG---C-TCGG--GGC-T--
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
20230332 GC--AC---GCTCATT---TGTCTACAGACCGAACC-G---GAGGATT----TAGCAAGATCGGT
712 GCATACGGAGTTCATTCCCAGTCTA-AGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
20230381 AGCATGCA-AAGGGGACCCGACCGATTCC-AGC-TGCGCATCCTGCCCCTCT-GCCGGATTTGA-
776 AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG--CTGAG
* * * * *
20230441 TGCCGGCAC-CCCGTTTCGTTCTGGTTGACTTAGGCATAC-GA-TTCATTCCCAGTCTAAAC-TA
839 CGCCCGCACGCTCGTTTCG-T-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
20230502 TTGG
902 -CGA
* **
20230506 AGTTCATTCCTAGTCTAAGATCGGACCA-GA---AGGGTTTATGGCAGCACATGCT-GGCTC-GG
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGG
* **
20230565 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGGCACCATCACCGGAAGCATCGCCGGAGAACC
64 CATGTGCTGGTGCCGCATTTTTCTTCGTC--GGGGCACCATCGTCGG-AGCATCGCCGGAGAACC
* * * *
20230630 TGACTGGCCGGCATTGGGGTTCC-ACGAT--GGGGGGCCGCGGGGGTGTTGCACACATGATGGTG
126 TGAC-CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGTG-TGCGCACATGAT-GTG
* *
20230692 CGAT--GTGCTCGTACTTGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGGAGAACTC
187 CGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTC
**
20230755 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20230820 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTAGGTGAATTATT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTT
* * * *
20230885 TTGTGCATTCCAA-AGAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGA
379 TTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *
20230949 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTT
443 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTC
* *
20231013 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAAAAAAA
507 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
20231078 TGGCACTGGAATGCTA-AAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGG
572 TGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
20231142 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGTCCG-C-TCGTTCCCT
636 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGT
** ** * * * * **
20231205 CAATTGGCTTAGGTGTACGGAGTTCTTTCCCAGTCTAAGAT-TAGACCAGACTAAGGGTTACGAT
700 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGC
* ** * * * * *
20231269 AGCAGGAT-GGACAGTACATAGAGGGGGACCC-AGTCGATCCCCGGCTTGTGCGTCCTGCCCCTC
764 AGCAGGATCGG-CAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTC
* * * * * *
20231332 TGGCTGGCTGAGTGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAG
827 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
20231397 --T---C-T---A
892 TCTAAGCATACGA
* *
20231401 AG---A-T--C-G-----GA-C---CA-GACCGAGGGTTGCGGCAACACATGCTGGGCACGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
20231449 TGTGCTGGTGCCGTATTTATCTTCATCGGGGCAGCATCGACGGAGCATCGTCGGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
20231514 GGCGGCATTAGGGTTCCGACGATTGGGGGGGTCGGGGGGGTATGCGCACATGATGTGCTATGGGT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20231579 CCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-GAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
20231643 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * **
20231708 --TTTTCAAATGGTCACGAAATCTTGTACACTTCTAGTTTTGAGCTGAATTTTTTTGTGCAAGTG
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
20231771 AACAAAAATACAAGGATCACGTCTAGCATGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTTAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* *
20231836 AAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20231901 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTAGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
20231966 CA-AAGATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
585 CAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
20232030 TCTCTCTGGTCGGCGTAGTGCCAGCCCGCCTGCCCGTCCG-C-TCGTTTCGTCGGTTGGCTTAGG
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * *
20232093 CATATGGGGTTCATTTCTAGTCTAAGA-CCAGACCAGACCGAGGATTGCAGCAACAGGATCGGCA
713 CATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
20232157 GCACGCAAAGGGGGACCCGATCGATCTCC-GGCCTGCGCATCCTGCCCCTC-GGCCGGCTGAGCG
777 GCACGCAGAGGGGGACCCGACCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
20232220 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGTATATGG
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGA
* ** * *
20232284 AGTTCATTCCCAGTCTAAGATCGGACCGGAAAGAGGGTTACGGCAGCACATGCTGGGCTCCGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** *
20232349 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * *
20232414 GGCGGCATTGGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
131 GACGGCATTGGGG-TTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20232479 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
20232544 AAAGTA-CATTTCAGATTTTGCAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTAAAATGGGAACA
260 AAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
20232608 CTTTTTTGAAATGGTCACAAAATCTTGAATGCTTCGAGTTTTTAGCTGAATATTTTTT-TGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATG
* *
20232672 CCAACAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * * * *
20232737 AAAAATCTCAAACCGTAGAAAGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20232802 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
20232867 TGC------------A---G---AAACCCACCTACCACCTTATCAATCCACGGCTTGCGCATCTC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
20232914 GTC-CTCTGGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCCG-C-TCCTTTCATCGGTTGGCTTCG
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
20232976 GCATACGGAGTGCATTCCCAGTCTAAGATTGAACC-GAACCGTGGGTTGTGGCAGTAGGATCGGT
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGC
** * * * *
20233040 AGCTTGCAGAGGGGGACCCGACCGAT-TCTCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGC
776 AGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
20233104 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
20233169 AGTTCATTCCCAATCTAAGATCGGACAGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
20233234 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * *
20233299 GACGACATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTGGGCGCACATGATGTGAGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20233364 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
20233429 AAGAGCATTTGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
20233494 TTTTTCAAATGGTCACAAAATCTTGTACGCTCCGAGTTTTTAGCTGAATATTTTTGTGCATACCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
20233559 ACAAAACTACAAGGATCACGTCTACCAAGTTTGGGGTC-AAACTCCTTTCGAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * *
20233623 AATGCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAA
456 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
20233688 CTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGC
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
20233753 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGTCTTGCGCATCCCGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
20233818 TCTCTGGCCGGCGTAGGGCCCGCCCGTCCGCCCGCCCGCCTGTTCGTTCCATCAGTTGGCTTAGG
651 TCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCC--TTCGTTTCGTCGGTTGGCTTAGG
* ** * * *
20233883 CATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACTGAGAGTTGCAGCAGTAGGATCGGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * ** *
20233948 CACGTAGAAGGGGATCTGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
778 CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
20234013 CGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * *
20234075 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATACTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** * *
20234140 TTTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * ** * *
20234205 GACGACATTGAGGTTCC-AGCGATTGGGGGGACCGGGGGGGTGTGCGCACTTGATGTACGATGGG
131 GACGGCATTGGGGTTCCGA-CGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
20234269 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
20234334 TAAAGAGTATTTCAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
20234399 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGAGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
20234464 CAACAAAAATACAATGATCACATCTACCAAGTTTGGGGACAAAACTCC-TTCTGAAAAAATTTTA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTA
* * * *
20234528 AAAAATCTCGAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
20234593 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
20234658 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATACAC-GCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
20234722 GTCTCTCTGGTCGGCGTAGTGCCCG--C-CCACCCGCCTG-C-TCGTTTCTTCGGTTGGCTTAGG
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
20234782 TATACGGAGCTCATTCCCAGTCTAAGATCGGACC-GAACTGAGAGTTGTGGCAGCAGGATCAAG-
713 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATC-GGC
* ** *
20234845 AGCACGCAGAGGGGGACCCGACCGAT-CCTCGGCTTACGCATCCCAACCCTCTGGCCTGCTGAGC
776 AGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
20234909 GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * *
20234974 AGTTCATTCCTAATCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
20235038 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT-------T----GGAGAATCTAAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * *
20235092 CGATGGCAGTGGGGTTCCGACGATCGGGGGGGTC-GGGGGTG-GCGCACATGTTGTGTGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20235155 GCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20235220 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
20235285 TTTTTTCAAATGATCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCT
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
20235350 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAAATTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
** * * *
20235415 AAATGTCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** *
20235480 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTTTCAAG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
20235545 CAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTACGCATCTCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* **
20235610 CTCTATGGCCGAG-GTAGTGCCCG--C-CCGCCCGCCAACTCTT--TTT-GTCGGTTGGCTTAGG
650 CTCTCTGGCCG-GCGTAGTGCCCGCCCGCCGCCCGCCCGC-CTTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
20235668 CATACGGAGTTCATTCCCAATCTAAGAAT-GGACCAGACCGAGGTTTGCAGTAGTAGGATCGGCA
713 CATACGGAGTTCATTCCCAGTCTAAG-ATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
20235732 GCACGCAGAGGGGGAACCGATCGATCCTTGGCTTGCCCATCCCACCCTTCTGGCCGGCTGAGCGC
777 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
20235797 CCGCACGCTCATTTCGTAGTTTGACTTAGGCAAACGGA----ATT--CA-T-T---C---C--
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
20235844 ---T-A-----AG-CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** ** **
20235899 TGTGGTGGTGCCATATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAGAAGTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* *
20235953 GACGGCATTGAGGTTCCGACGATC-GGGGGGTCGGGGGGCTGTGCGCACATAATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * *
20236017 GCTGGTACTTGGCCCTCACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
20236082 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* ** * * *
20236147 -TTTTTAAAATCATCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGAGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20236211 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * *
20236276 AAATCCCGAACAGTATAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20236341 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCAGG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * **
20236406 CAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGACTTGCGCATTTCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
20236471 CTTTCTGACCGGCGTAGCGCCAGCCCGCCCGCCCACCTGCCCGCCCGCCTGCTCGTTTCATCGGT
650 CTCTCTGGCCGGCGTA--G--TGCCCGCCCG----CC-GCCCGCCCGCCT--TCGTTTCGTCGGT
* * * * *
20236536 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGGTCAGAA-CAGACTGATGGTTGTGGCAACA
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTGCGGCAGCA
* ** * *
20236600 GGATCGACAGCACATAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGTCCCTCTGGCCG
768 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
20236665 GCT-ATGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGGAGATGGAGTTCATTCCCAGTCTAA
833 GCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20236729 GTATACGG
897 GCATACGA
* * * *
20236737 AGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGACATCACATGCTTGGCTCGCGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * *
20236801 ACGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATTGTCGGAGCATCGCCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * ** *
20236866 CGGCGGCATTGGGGTTCCGATGATCGAGGGGGTCGGGGGGTGTGCGCTTATGATGTGCGTTGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
20236931 GCTGGAACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
20236996 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
20237061 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
20237126 AA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATTTTAA
390 AACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-A
* * * * **
20237190 AAAAATCCCGAACCGCAAAATGTTTTAAAAATCATGAAAAATAGAAAACGAGTCACCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * * *
20237255 AAACTTCACGTGACGGCCTAACGTACCATTGTATGATTTTACATGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
20237320 TGCAAAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * * * * *
20237385 GTCTCTCTTTCCGACGTAGCGCCCGCCCATCCGCCCGTCTG-C-TCGTTTCGTCGATTGGCTTAG
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAG
* * * * * *
20237448 GCAAACGGAGTTCATTTCCCTGTCTAAGATC-ATACCAGACCGAAGGTTGTGGCAGCAGGATCAG
712 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * * * *
20237512 CAGTACGCAGAAGGGGATCTGACCTATCCCCGGCTTGCGCATCCCACCCCTTTGGCTGACTGAGC
775 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** *
20237577 GCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
** * * **
20237642 AGTTCATTCCCAGTCTAAGATCGGACTTGATCGAGGGTTACGATAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * *
20237707 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCTTCGCCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * ** * * *
20237772 GGCGGCATTAGGGTTTTGACGATCAGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* **
20237837 GCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
20237902 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
20237967 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTTCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
20238032 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCCAAAACAA-TTTAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA-AATTTTAA
* ** * *
20238095 AAAACTCCTGAACCGTAAAAAGTTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
454 AAAA-TCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
20238160 GAAACTTCACGTGAAGGCTTAACGGACCGTTGTATGAATTTACAAGCCATAAAAATTGGCATTGG
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGG
* * *
20238225 CACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
20238290 CCGTCTCTCTAGTCGGTGTAGTGCCC-ACCGCCCGTCCGTCCG-C-TCATTTCGTCGGTTGGCTT
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTT
* * * ** * *
20238352 AGGCATACGGAATTCATTCCCAGTATAAGATC-AGACC-GAACTGAGGGTTACTACAACAGGATT
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACTGAGGGTTGCGGCAGCAGGATC
* *
20238415 GGCAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
773 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
20238480 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGCATA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATA
20238544 GCG-
902 -CGA
* * * *
20238547 AGTTCATTCCCAGTCTATGATCGGACCA-GACCGAGGGTTGCGGCAACACCTGCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** *
20238611 ATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATC-TCGGAGGATCAACGAAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * *
20238674 TCGGCGGCATTGGGGTTCCGACGATTGGGAGTGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
129 CCGACGGCATTGGGGTTCCGACGATCGGG-GGGGTCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
20238739 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCT
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
20238804 TTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCCATTAAACTGTCTAAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
20238869 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
20238934 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTT
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTT
* * * *
20238998 AAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCAT
452 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
20239063 GAAACTTCAGGTGAAGGCTTAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGTATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
20239128 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
20239193 CGTCTCTCTGGTCGGCGTAGTGCCCG--C-CTGCCCGTCCG-C-TCGTTTCGTCGGTTGGCTTAG
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAG
* * * *
20239253 GCATACAGAGTTCATTCCAAGTCTAAGATC-AGACCAGA-TAAAGGGTTGCGGCAGCAGGATTGG
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACT-GAGGGTTGCGGCAGCAGGATCGG
* * * * * ** * *
20239316 CGGGATGTAGAGGGGGACCCGACCGATCTCC-GACTTGCATATCCTGCCCCTCTGGCCGACTGAG
775 CAGCACGCAGAGGGGGACCCGACCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
20239380 TGCCCGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACG
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
20239445 G
904 A
* ** * * *
20239446 AGTTCATTCCCAGTCTAAGATTGGATGGGACCGAGGGCTGCGGTAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20239511 TGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCG-CTGGAGCATCGTCGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC
** * * *
20239575 CGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCATATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20239640 GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
20239705 AAAGAGCATTTGAGATTTTGCAGGCTTCCTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20239770 TCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * **
20239835 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTTGAAAAAATTAAAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* **
20239900 AAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
20239965 ACTTGACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGAATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * * *
20240030 CAAAAATATTAAGATGTTCCTAAACACACCTACCACCCTATCGATCCACGGCTTACGCAACCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
20240095 CTCTCTGGTCGGCATAGTGCCCG--C-CCGCCCGCCC-TC-TCGTTTCATCAGTTGGCTTAGGCA
650 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * * * * *
20240155 TACGGAGTTCATTCCCAGTCCAAAATTGGATCGGAC-CAGGGGTTGCGGTAGCAAGATTGACAGC
715 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGA-GGGTTGCGGCAGCAGGATCGGCAGC
* * * * **
20240219 ACGTAGAAGGGGACCCGATCGAT-CCTCGGCTTGCGCATCCCGCCCTTCTGGCCGAATGAGCGCC
779 ACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
20240283 CGCACGCTCGCTTCGTGGGTTGAC-----C-TA--G-G--CA-T---A---T--G-----G-
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * **
20240319 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACGGCACATGCTGGGCTCGAACA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * * * *
20240384 TGTGCTGGTGCCGTATTTTTAATC-ACTGGGGCACCATCATCGGAGCATTGCCGAAGAACCTAAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * *
20240448 CGACGGCCTTGGGGTTCCGACGATCGAGGGGGT-GGGGGGTGTGAGCACATGATATGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * * *
20240512 GTTGGTACTTGGCCCTTACATTGG-CCCCTATCCCTCATGAAACCTCAAAAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
20240576 AAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
20240641 TTTTTTCAAATGGTCACAAAAGTCTTGCACACTTTGAGATTTTAGCTGAATTTTTTTATGCATGC
325 TTTTTTCAAATGGTCACAAAA-TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
20240706 CAATAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAATATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * *
20240770 AAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
20240835 AACTTCATGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-
* * * *
20240900 T-TAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * * * *
20240964 GTCTCTTTGGCCGACGTAGTGCCCGCTTGCCCGCCCCCCCG-C-TCATTTCGTCGGTTGGATCA-
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAG
* ** * * * * **
20241026 G-ATTAAGG-GTT-A--CGGTAG-C-AGGATCAGTAGCACG-CAGA-GG--G-GG-A-CCCGATC
712 GCA-TACGGAGTTCATTC-CCAGTCTAAGATC-GAACCA-GACTGAGGGTTGCGGCAGCAGGATC
* * *** * * * ** *
20241077 -G-ATC-C-CTG-GCTTG-CGC-ATCCCATCGCTCTGGC-TG-G--T--TG----AAT-GCCCGC
773 GGCAGCACGCAGAGGGGGACCCGA-CCGATC-C-CTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
20241124 --A--------A-GCTCGTTTCGTGGGATGACTAAGGCATACGGAGTTCATTCCCAG--T--G--
835 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
20241172 T---A
900 TACGA
* * ** * *
20241174 AG---A-T--C-G-----GAT----CA-GACCAATGGTTATGGTAGCACATACTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
20241222 TGTGCTGGTGCCGTATTTTTCTTCATCAGGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* *
20241287 -AGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GA-CGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
20241351 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20241416 AAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
20241481 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATTCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20241546 AACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAATATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * *
20241610 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
20241675 ACTTCATGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACC
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
20241739 CAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** ** * * * *
20241804 CTCTCTGGCCAACGTAGCACCCGTCTGCC-CAC-CCC-CC-AC---TCGT---TT--C----G--
650 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGGCA
* ** * *
20241851 T-C--A--T--TT----G-----GATCG-----GACCGAGGGTAACGACAGCAGGATCGGTAGCA
715 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * *
20241895 TGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCGCTCTGGCCGGTTGAGCTCCCG
780 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
20241960 CAAGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-CG-
845 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
*
20242017 -G---A---CC-G-----GA-C---CA--A-C---GGTTACGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * * * *
20242059 TGTGTTGGTGCCATATTTTTCTTCATTGGGGCACCATTG-CAGGAGCATCGTCGAAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC
* * * *
20242123 CGGCGGCATTAGGGTTCCGACAATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGG
*
20242187 TGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
20242252 TAAAGAGCATTCGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGAC
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGAC
*
20242316 ACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
20242381 CCAAAAAAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAACTCCATTGGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * *
20242446 AAAAATCCCGGACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT-CCAAT
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-AT
* * *
20242510 GAAACTTCACGTGAAGGCGTAAGAGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
20242575 ATGAAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
20242640 CGTCTCTCTGGCCGACGTAATGCCCGCCCGTCCGCCCGCCCG-CTT-GTTTCATCAGTTGGCTTA
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTA
* * * * * *
20242703 GGCATACAGAGTTCATTCCTAGTCTAAGAT-TAGACCAGACCGAGGGTTGTGACAGCAGGATCGG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
20242767 CAGCACGTAGAAGGGGACCCGGCCGAT-CCTCGGCTTGCACATCCCACCCCTTTGGCCGACTGAG
775 CAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
20242831 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAATCTAAGCATACG
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
20242896 G
904 A
* * * * * *
20242897 AGTTCATTCCCAGTCTAAGATCGAACCA-GACCAAAGGTTACGGTAGCACATGCTGGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
20242961 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* ** *
20243026 CGACGGCATTAGGGTTCCGGTGATC-GGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
**
20243090 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
20243155 AAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCGTTAAAGTGTCTGGAATGGGAACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
20243220 TTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTTAGCTGAATGTTTTTATGCATCCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * * * *
20243285 AACAAAAATACAGGGATCACATCTGGCAAGTTTGGGGCCCAAACACCTTCCAAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * * *
20243350 AAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAATACGAGTCGTCTTGCCGTGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20243415 ACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*** * * *
20243480 CAGAAATATGAAGATGTGCCTAAACCCACCTACTGTCCTATCAATCCATGGCTTGTGCA-----T
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * *
20243540 C-C-C--GCC--C---GT---------CCGCCCG-CCAAC-TCATTTCGTCGGTTGGCTTGGGCT
650 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * **
20243585 TACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAATAGGAT-GGACAGC
715 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGG-CAGC
* * * * * * * *
20243649 ACGTAGAGGGGGACCC-AGTCGATCCCCGACTTGCCCATCCCACCCCTTTGGCTGGCTGAGCGCC
779 ACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
20243713 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
20243772 A----A----C---C--AGA-C---C--GA--GA--GTTGCGGCAGCACATGTTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * *
20243814 TGTACTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * *
20243879 GATGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCGCATATGATGTGCGATGGGTT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20243943 TTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * * *
20244008 AAGTGCATTTGAGATTTTACAAGTTTGCTGCCAATTGCCATTAAACTGTCTAAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * **
20244073 TTTTTCAAGTGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGTGA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * * *
20244138 AAAAAAATATGAGGACCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAGAAAATTTAAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
** * * *
20244203 AATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAATACGAGTCGTCTTGCCGTGAAA
456 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
20244268 CTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTT
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
20244333 AGAAATATGAAGATGTACCTAAACCCACCTACCGCCCTATCAAT-C-C-G--T--G------G--
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
20244383 -CT-T-G-C-GC--A-T-CCCGCCCGTCCGCCCGCCAG-C-TCATTTCGTCAGCTAGCTTAGGCT
651 TCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * **
20244437 TACGTAGTCCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACAGCAGCAAGATCGATAGCA
715 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
** *** * *
20244502 CGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTTAGCGCCCG
780 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
20244567 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C--
845 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
20244623 -G---A-----A--CT-AGA-C---C---A---AGGGTTACGGCAGCACAT-CTGGGGTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20244665 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCTTCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
20244730 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTTGTGTGCATATGATGTGAGATGGGT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG-TGTGCGCACATGATGTGCGATGGGT
* *
20244794 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTC-ATGAACTCACACCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCT
* * * *
20244858 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATTGCCATTAAACTGTCTGAAATGGGGATA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
20244923 CTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * ** * *
20244988 CAACAAAAATACAAGGACCACGTCTGCCAAGGTTGGATCCAAAACTCCTTCCGAAAAAATTTAAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * * *
20245053 AAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAATACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
20245118 AACTGCGCGTGATGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** * *
20245183 AAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
20245248 TCTCTCTGGTCGACGTAGTGCCCGCCCTTCCGCCCG-CCGAC-TCATTTCGTCGGTTGGCTTAGG
649 TCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGG
20245311 CATACGGAGTTCATTCCCAGTCTAAGAT
713 CATACGGAGTTCATTCCCAGTCTAAGAT
20245339 TAGACCAGAT
Statistics
Matches: 12772, Mismatches: 1559, Indels: 995
0.83 0.10 0.06
Matches are distributed among these distances:
804 1 0.00
805 3 0.00
806 2 0.00
809 1 0.00
810 2 0.00
811 9 0.00
812 1 0.00
813 2 0.00
814 1 0.00
815 7 0.00
816 5 0.00
817 7 0.00
818 2 0.00
819 1 0.00
822 1 0.00
824 1 0.00
825 1 0.00
826 4 0.00
828 1 0.00
829 2 0.00
832 4 0.00
835 5 0.00
836 13 0.00
837 392 0.03
838 347 0.03
839 357 0.03
840 122 0.01
841 4 0.00
842 15 0.00
843 7 0.00
844 2 0.00
845 4 0.00
846 1 0.00
847 3 0.00
848 3 0.00
849 7 0.00
850 4 0.00
851 111 0.01
852 1156 0.09
853 4 0.00
854 5 0.00
855 3 0.00
856 5 0.00
857 6 0.00
858 6 0.00
859 14 0.00
860 115 0.01
861 310 0.02
862 149 0.01
863 31 0.00
864 36 0.00
865 80 0.01
866 35 0.00
867 127 0.01
868 2 0.00
869 39 0.00
870 13 0.00
871 405 0.03
872 328 0.03
873 150 0.01
874 69 0.01
875 417 0.03
876 119 0.01
877 275 0.02
878 285 0.02
879 39 0.00
880 78 0.01
881 36 0.00
882 36 0.00
883 158 0.01
884 391 0.03
885 658 0.05
886 200 0.02
887 15 0.00
888 41 0.00
889 3 0.00
890 7 0.00
891 5 0.00
892 8 0.00
893 13 0.00
894 2 0.00
895 6 0.00
896 8 0.00
897 5 0.00
898 11 0.00
899 1173 0.09
900 238 0.02
901 145 0.01
902 580 0.05
903 534 0.04
904 390 0.03
905 558 0.04
906 714 0.06
907 376 0.03
908 193 0.02
909 2 0.00
910 1 0.00
912 8 0.00
914 189 0.01
915 125 0.01
916 187 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
AGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCCTTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
Found at i:20234070 original size:26 final size:26
Alignment explanation
Indices: 20234041--20234093 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234031 GTTAACTTAG
20234041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20234067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20234093 G
1 G
20234094 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20234977 original size:26 final size:26
Alignment explanation
Indices: 20234940--20234992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234930 GTTAACTTAG
* *
20234940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
20234966 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20234992 G
1 G
20234993 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20237639 original size:26 final size:26
Alignment explanation
Indices: 20237608--20237660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20237598 GTTGACTTAG
*
20237608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20237634 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20237660 G
1 G
20237661 ATCGGACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20238542 original size:26 final size:26
Alignment explanation
Indices: 20238513--20238563 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20238503 GTTGACTTAG
20238513 GCATA-CGAGGTTCATTCCCAGTCTAA
1 GCATAGCGA-GTTCATTCCCAGTCTAA
20238539 GCATAGCGAGTTCATTCCCAGTCTA
1 GCATAGCGAGTTCATTCCCAGTCTA
20238564 TGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATAGCGAGTTCATTCCCAGTCTAA
Found at i:20239449 original size:26 final size:26
Alignment explanation
Indices: 20239412--20239464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20239402 GTTGACTTAG
20239412 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
20239438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20239464 G
1 G
20239465 ATTGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20239639 original size:899 final size:898
Alignment explanation
Indices: 20228586--20245365 Score: 18206
Period size: 852 Copynumber: 19.0 Consensus size: 898
20228576 CGCTCATTTC
** * * * * * * * *
20228586 GTCTAAGATCAGACC-GAACTGAGGGTTGTGGTAGCAAGATCGGTAGCATGCAGAAGGGGACCCG
1 GTCTAAGATCAGACCAG-ACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
* * * * *
20228650 ACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCCCGTTTCGTTG
65 ACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
20228715 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** ** * *
20228780 CGGACCGGACCGAGGGTTATGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTC
194 CGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** ** ** * *
20228845 TTCGTCACGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTTCGACG
259 TTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
20228910 ATCGGGGGAGCCGAGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
324 ATCGGGGGGGCCG-GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
20228975 TTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
**
20229040 CAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
452 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
20229105 ATCTTGTACACTTCCAGTTTTTTAGCTGAATTATTTTGTGCATTCCAAAGAAAATACAAGGATCA
517 ATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
20229170 CATCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
581 CGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
20229234 AGTTTCAAAAATCAGGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTA
645 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * * *
20229299 AGGGACCACTGTATGAATTTACAAGCCAAAAAAATGGCACTGGAATGCTAAAATATGAAGATGTG
710 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
* * *
20229364 CCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
775 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
* * * ** * * *
20229429 GCCCACCCGTCCGCCCGTCCGCTCGTTCCCTCAATTGGCTTAGGCGTATGGAGTTCTTTCCCA
840 GCCC-GCC-T--GCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** *
20229492 GTCTAAGATTAGACCAGACTAAGGGTTGCGATAGCAGGA-TGGACAGCACATAGAGGGGGACCC-
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGG-CAGCACGTAGAGGGGGACCCG
* * * * * * * * * *
20229555 AGTCGATCCCCGGCTTGTGCGTCCTGCCCCTCTGGCTGGCTGAGTGCCCGCATGCTTGTTTCATG
65 A-CCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
20229620 GGTTGAC-T-----T----AG----------G-C--A-C--ACGGAGTTCATTCCCAGTCTAAGA
128 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
20229659 TCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCACGGGCATGTGCTGGTGCCGTATTTAT
193 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
20229724 CTTCATCGGGGCAGCATCGAC-GGAGCATCGTCGGAGAACCTGACTGGCGGCATTAGGGTTCCGA
258 CTTCACCGGGGCACCATCG-CTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * * *
20229788 CGATTGGGGGGGTCGGGGGGGTATGCGCACATGATGTGCTATGGGTCCTGGTACTTAGCCCTTAT
322 CGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
20229853 ATTGGCCCCCTATCCCTCATCAAACCTC-GGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
386 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
20229917 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC--TTTTCAAATGGTCACGA
451 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * ** *
20229980 AATCTTGTACACTTCTAG-TTTGAGCTGAATTTTTTTGTTGCAAG-TGAACAAAATACAAGGATC
516 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAAAAAAAATACAAGGATC
* ** * * * * *
20230043 ACGTCTAGCATCTTTGGGGCCAAAAATCCTTTCAAAAAAATTTT-TAAAATCCCAAATCGTAAAA
580 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
*
20230107 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
645 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
20230172 AGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTAGCATGCAAAGATATGAAGATGTG
710 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
*
20230237 CCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
775 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
* * * * * *
20230302 GCCAGCCCG-CC-T--GCCCG-TCCGCTCGG--GGC-T--GC--AC---GCTCATT---T
840 GCCCGCCTGCCCGTCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * * * * *
20230344 GTCT---A-CAGACC-GAACCGGAGGATT----TAGCAAGATCGGTAGCATGCA-AAGGGGACCC
1 GTCTAAGATCAGACCAG-A-CAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCC
* * * * * * *
20230399 GACCGATTCCAGC-TGCGCATCCTGCCCCTCT-GCCGGATTTGA-TGCCGGCAC-CCCGTTTCGT
64 GACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GA-CTGAGCGCCCGCACGCTCGTTTCG-
* * * *
20230460 TCTGGTTGACTTAGGCATACG-A-TTCATTCCCAGTCTAAAC-TATTGGAGTTCATTCCTAGTCT
126 T-GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCT
** * *
20230522 AAGATCGGACCAGA---AGGGTTTATGGCAGCACATGCT-GGCTC-GGCATGTGCTGGTGCCACA
189 AAGATCGGACCAGACCGAGGG-TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
20230582 TTTTTCTTCGTCGGGGGGCACCATCACCGGAAGCATCGCCGGAGAACCTGACTGGCCGGCATTGG
253 TTTTTCTTC-AC-CGGGGCACCATCGCTGG-AGCATCGCCGGAGAACCTGAC-CGACGGCATTGG
* *
20230647 GGTTCC-ACGAT--GGGGGGCCGCGGGGGTGTTGCACACATGATGGTGCGAT--GTGCTCGTACT
314 GGTTCCGACGATCGGGGGGGCCG-GGGGGTG-TGCGCACATGAT-GTGCGATGGGTGCTGGTACT
* *
20230707 TGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGGAGAACTCACACCCCCTTAAAGAGC
376 T-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGC
**
20230772 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTTTTTTC
439 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
20230837 AAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTAGGTGAATTATTTTGTGCATTCCAAAGAA
504 AAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
*
20230902 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATC
568 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATC
* * *
20230966 CTGAACCGTAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
632 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
20231031 ACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAAAAAAATGGCACTGGAATGCTAAA
697 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
*
20231096 ATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
762 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * ** **
20231161 TGGCCGACGTAGTGCCCACCCGTCCGCCCGTCCGCTCGTTCCCTCAATTGGCTTAGGTGTACGGA
827 TGGTCGGCGTAGTGCCC-GCC-T--GCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
*
20231226 GTTCTTTCCCA
888 GTTCATTCCCA
* * * ** * *
20231237 GTCTAAGATTAGACCAGACTAAGGGTTACGATAGCAGGA-TGGACAGTACATAGAGGGGGACCC-
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGG-CAGCACGTAGAGGGGGACCCG
* * * * * * * * * *
20231300 AGTCGATCCCCGGCTTGTGCGTCCTGCCCCTCTGGCTGGCTGAGTGCCCGCATGCTTGTTTCATG
65 A-CCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
20231365 GGTTGAC-T-----T----AG----------G-C--A-C--ACGGAGTTCATTCCCAGTCTAAGA
128 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
20231404 TCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCACGGGCATGTGCTGGTGCCGTATTTAT
193 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
20231469 CTTCATCGGGGCAGCATCGAC-GGAGCATCGTCGGAGAACCTGACTGGCGGCATTAGGGTTCCGA
258 CTTCACCGGGGCACCATCG-CTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * * *
20231533 CGATTGGGGGGGTCGGGGGGGTATGCGCACATGATGTGCTATGGGTCCTGGTACTTAGCCCTTAT
322 CGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
20231598 ATTGGCCCCCTATCCCTCATCAAACCTC-GGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
386 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
20231662 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC--TTTTCAAATGGTCACGA
451 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * ** *
20231725 AATCTTGTACACTTCTAGTTTTGAGCTGAATTTTTTTGTGCAAGTGAACAAAAATACAAGGATCA
516 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * * * * * *
20231790 CGTCTAGCATGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTTAAAAATCCCAAATCGTAAAAA
581 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
20231855 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
646 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
20231920 GGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTAGCATGCAAAGATATGAAGATGTGC
711 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
*
20231985 CAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG
776 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT-
* * * *
20232050 CCAGCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGGGTTCATTTCTA
840 ---GCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * * *
20232112 GTCTAAGACCAGACCAGACCGAGGATTGCAGCAACAGGATCGGCAGCACGCAAAGGGGGACCCGA
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* * * * * *
20232177 TCGATCTCCGGCCTGCGCATCCTGCCCCTC-GGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGG
66 CCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
20232241 TTGACTTAGGCATACGAGGTTCATTCCCAGTCTAAGTATATGGAGTTCATTCCCAGTCTAAGATC
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * *
20232306 GGACCGGAAAGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * *
20232371 TCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCCGACG
260 TCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTCCGACG
*
20232436 ATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
324 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
20232501 GGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGTA-CATTTCAGATTTTGC
389 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTAC
* * * * *
20232565 AGGTTTGCTGTCAGTAGCAATTAAAGTGTCTAAAATGGGAACACTTTTTTGAAATGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* ** * *
20232630 TCTTGAATGCTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAACAAAACTACAAGGATCAC
518 TCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * *
20232694 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAGAAAG
582 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
20232759 TTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
20232824 GGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGC------------A---G--
712 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* * * * *
20232872 -AAACCCACCTACCACCTTATCAATCCACGGCTTGCGCATCTCGTC-CTCTGGCCAGCGTAGTGC
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA--G-
* * * * * *
20232935 CTGCCCGCCCGCCCGCCCGCTCCTTTCATCGGTTGGCTTCGGCATACGGAGTGCATTCCCA
839 -TGCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* *** * * * * ** *
20232996 GTCTAAGAT-TGAACC-GAACCGTGGGTTGTGGCAGTAGGATCGGTAGCTTGCAGAGGGGGACCC
1 GTCTAAGATCAG-ACCAG-ACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCC
* * * * * *
20233059 GACCGATTCTCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTG
64 GACCGA-TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* *
20233124 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGA
128 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
20233189 TCGGA-CAGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
193 TCGGACCA-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * *
20233253 TCTTCGTCGGGGCACCATCG-TCGGAGCATCGCCGGAGAACCTGATCGACGACATTGGGGTTCCG
257 TCTTCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
20233317 GCGATCGGGGGGGTCGGGGGGTGGGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTAT
321 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
** * *
20233382 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGGGATTTT
386 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
20233447 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAA
451 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * * *
20233512 AATCTTGTACGCTCCGAGTTTTTAGCTGAATATTTTTGTGCATACCAACAAAACTACAAGGATCA
516 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * *
20233577 CGTCTACCAAGTTTGGGGTC-AAACTCCTTTCGAAAAAATTTTAAAAAATGCCGAACCGTAAAAA
581 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
20233641 GTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAA
646 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
20233706 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGC
711 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
* * * *
20233771 CTAAACCCACCTACCACCCTACCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGG
776 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG
* * * *
20233836 CCCGCCCGTCCGCCCGCCCGCCTGTTCGTTCCATCAGTTGGCTTAGGCATACGGAGTTCATTCCC
841 CCCG-CC-T--GCCCGTCCG-C---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
20233901 A
898 A
* ** ** * * * * * * *
20233902 ATCTAAGATC-GAACTGGACTGAGAGTTGCAGCAGTAGGATCGGCAGCACGTAGAAGGGGATCTG
1 GTCTAAGATCAG-ACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
** * * *
20233966 GTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGG
65 ACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
20234031 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * * * *
20234096 CAGACCGGACCGAGGGTTACGGTAGCACATACTGGGCTTGGGCATTTGCTGGTGTCGTATTTTTC
194 CGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * * * * * *
20234161 TTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACCGACGACATTGAGGTTCC-AGC
259 TTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
* * * * *
20234225 GATTGGGGGGACCGGGGGGGTGTGCGCACTTGATGTACGATGGGTGCTGGTACTTAGCCCTTATA
323 GATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
20234290 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGTATTTCAGATTTTA
387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
20234355 CAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
452 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
20234420 ATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGAGCATGCCAACAAAAATACAATGATCAC
517 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * * * *
20234485 ATCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCATAAAG
582 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
20234550 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ** *
20234615 GGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACACAGAAATATGAAGATGTGCC
712 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* *
20234680 TAAACCCACCTACCACCTTATCGATACAC-GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
** * * *
20234744 CCGCCCACCCG-CCTGCTCGTTTCTTCGGTTGGCTTAGGTATACGGAGCTCATTCCCA
842 CCGCCTGCCCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * ** *
20234801 GTCTAAGATCGGACC-GAACTGAGAGTTGTGGCAGCAGGATCAAG-AGCACGCAGAGGGGGACCC
1 GTCTAAGATCAGACCAG-ACAAAGGGTTGCGGCAGCAGGAT-TGGCAGCACGTAGAGGGGGACCC
* **
20234864 GACCGATCCTCGGCTTACGCATCCCAACCCTCTGGCCTG-CTGAGCGCCCGCACGCTCGTTTCGT
64 GACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCGT
* * * * *
20234928 GGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAATCTAAG
127 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * *
20234993 ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
192 ATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * * * *
20235058 TCTTCGTCGGGGCACCATCG-T------T----GGAGAATCTAACCGATGGCAGTGGGGTTCCGA
257 TCTTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
20235112 CGATCGGGGGGGTC-GGGGGTG-GCGCACATGTTGTGTGATGGGTGCTGGTACTTGGCCCTTAGA
322 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
20235175 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTA
387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
20235240 CAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAA
452 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
20235305 ATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCTAACAAAAATACAAGGATCAT
517 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * ** * *
20235370 GTCTACCAAGTTTGGGGCCAAAAATCATTTCGAAAAAAATTTAAAAAATGTCAAACCCTAAAAAG
582 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
20235435 TTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ** * * *
20235500 GGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTTTCAAGCAGAAATATGATGATGTGCC
712 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* * * * * *
20235565 TAAACCCACCTACCACCCTATCGATCTATGGCTTACGCATCTCGTCTCTATGGCCGAG-GTAGTG
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCG-GCGTAGTG
* * * *
20235629 CCCGCCCGCCCG-CCAACTCTTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
841 CCCGCCTGCCCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * * * * *
20235687 ATCTAAGAAT-GGACCAGACCGAGGTTTGCAGTAGTAGGATCGGCAGCACGCAGAGGGGGAACCG
1 GTCTAAG-ATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
* * * * * * * *
20235751 ATCGATCCTTGGCTTGCCCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTAG
65 ACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
20235816 TTTGACTTAGGCAAACG--G--AATT--CA-T-T---C---C-----T-A-----AG-CTAAGAT
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * **
20235855 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCCATGTGGTGGTGCCATATTTTTC
194 CGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** *
20235920 TTCACCGGGG---CA---C-----CATCGCCGGAGAAGTTGACCGACGGCATTGAGGTTCCGACG
259 TTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
20235974 ATC-GGGGGGTCGGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTCACAT
324 ATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
20236038 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTAC
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* **
20236103 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTAAAATCATCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20236167 TCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * *
20236232 TCTACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTATAAAGT
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
20236297 TTCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
20236362 GACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCAGGCAGAAATATGAAGATGTGCCT
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
* * ** * * *
20236427 AAGCCCACCTACCACCCTATCGATCCACGACTTGCGCATTTCGTCTTTCTGACCGGCGTAGCGCC
778 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG---GTCG--GCG-T
* * * *
20236492 AGCCCGCCCGCCCACCTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTC
837 AG--TGCCCG----CCTGCCCG---TCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
20236557 ATTCCCA
892 ATTCCCA
* * ** * * * * * * *
20236564 GTCTAAGGTCAGAACAGACTGATGGTTGTGGCAACAGGATCGACAGCACATAGAGGGGGACCCGG
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* * * *
20236629 CCGATCCCTGGCTTGCGCATCCCGTCCCTCTGGCCGGCT-ATGCGCCTGCACGCTCGTTTCATGG
66 CCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGA-GCGCCCGCACGCTCGTTTCGTGG
* * * * *
20236693 GTTGACTTAGGGAGATGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGAT
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
20236758 CGGACCAGACCGAGGGTTGCGACATCACATGCTTGGCTCGCGCACGTGCTGGTGCCGTATTTTTC
194 CGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
20236823 TTCACCGAGGCACCATTG-TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAT
259 TTCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * ** * * *
20236887 GATCGAGGGGGTCGGGGGGTGTGCGCTTATGATGTGCGTTGGGTGCTGGAACTTTGCCCTTATAT
323 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
20236952 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
20237017 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
20237082 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATTACAAGGATCACG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * *
20237147 TCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATTTTAAAAAAATCCCGAACCGCAAAATG
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAG
* ** * * *
20237212 TTTTAAAAATCATGAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCACGTGACGGCCTAAC
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
20237277 GTACCATTGTATGATTTTACATGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATCTGCC
712 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* * *
20237342 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-TTCCGACGTAGCG
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT-CGGCGTAGTG
* * * *
20237406 CCCGCCCATCCGCCCGTCTGCTCGTTTCGTCGATTGGCTTAGGCAAACGGAGTTCATTTCCCT
841 CCCG-CC-T--GCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCA
* * * ** * * * * *
20237469 GTCTAAGATCATACCAGACCGAA-GGTTGTGGCAGCAGGATCAGCAGTACGCAGAAGGGGATCTG
1 GTCTAAGATCAGACCAGA-CAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
* * * * ** *
20237533 ACCTATCCCCGGCTTGCGCATCCCACCCCTTTGGCTGACTGAGCGCCCATACGCTCATTTCGTGG
65 ACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
20237598 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * *
20237663 CGGACTTGATCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
194 CGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * **
20237728 TTCACCGGGGCACCATCGCCGGAGCTTCGCCGGAGAACCTGACCGGCGGCATTAGGGTTTTGACG
259 TTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
20237793 ATCAGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATAT
324 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
20237858 TGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
20237923 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20237988 TCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTTCATGCCAAAAAAAATACAAGGATCATG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
*
20238053 TCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAACAA-TTTAAAAAACTCCTGAACCGTAAAAA
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA-AATTTTAAAAAA-TCCCGAACCGTAAAAA
** *
20238116 GTTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
646 G-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * * * *
20238181 ACGGACCGTTGTATGAATTTACAAGCCATAAAAATTGGCATTGGCACGTAGAAATATAAAGATGT
710 AGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAAAAATATGAAGATGT
* *
20238246 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGTGTAG
774 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAG
* * * *
20238311 TGCCCACCGCCCGTCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCA
839 TG--C-CCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * ** * *
20238374 GTATAAGATCAGACC-GAACTGAGGGTTACTACAACAGGATTGGCAGCACGCAGAGGGGGACCCG
1 GTCTAAGATCAGACCAG-ACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
* * * *
20238438 ATCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGG
65 ACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
20238503 GTTGACTTAGGCATACGAGGTTCATTCCCAGTCTAAGCATA-GCGAGTTCATTCCCAGTCTATGA
129 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGA
* * * *
20238567 TCGGACCAGACCGAGGGTTGCGGCAACACCTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
193 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * ** * * *
20238632 CTTCGCTGGGGCACCATCTC-GGAGGATCAACGAAGAACCTGATCGGCGGCATTGGGGTTCCGAC
258 CTTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
20238696 GATTGGGAGTGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
323 GATCGGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
20238761 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCTTTAAAGAGCATTTGAGATTTTG
387 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
20238826 CAGGTTTCCTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAA
452 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
20238891 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
517 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
20238956 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG
582 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
20239021 TTTCAAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAG
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
20239086 GGACAACTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAAGATGTGCC
712 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
*
20239151 TAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
* *
20239216 CCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAA
842 CCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
20239273 GTCTAAGATCAGACCAGATAAAGGGTTGCGGCAGCAGGATTGGCGGGATGTAGAGGGGGACCCGA
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* ** * * *
20239338 CCGATCTCCGACTTGCATATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGGGGG
66 CCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
20239403 TTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*** * ** * *
20239468 GGATGGGACCGAGGGCTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * **
20239533 TCGTCGAGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGA
260 TCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
20239598 TCGGGGGGGCCAGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTG
325 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
20239663 GCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAG
390 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
20239728 GCTTCCTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATC
455 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
20239793 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
520 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * ** ** *
20239858 TACCATGTTTGGGGCCAAAACTCCTTTTGAAAAAATTAAAAAAAATCCCGAACCGCAAAAAGTTT
585 TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * * *
20239923 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGT
650 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
20239988 CCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGAATGCAAAAATATTAAGATGTTCCTAA
715 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
* * * *
20240053 ACACACCTACCACCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGGTCGGCATAGTGCCCG
780 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG
* * * * *
20240118 CCCGCCCGCCCTCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
845 CCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * * * * * *
20240172 GTCCAAAATTGGATCGGACCAGGGGTTGCGGTAGCAAGATTGACAGCACGTAGAAGGGGACCCGA
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* * * *
20240237 TCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGAATGAGCGCCCGCACGCTCGCTTCGTGGG
66 CCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
20240302 TTGAC-----C-TA-G--G--------CA---T----AT--GGAGTTCATTCCCAGTCTAAGATC
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * **
20240341 GGACCGGACCGAGGGTTGCGACGGCACATGCTGGGCTCGAACATGTGCTGGTGCCGTATTTTTAA
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
20240406 TCACTGGGGCACCATC-ATCGGAGCATTGCCGAAGAACCTAACCGACGGCCTTGGGGTTCCGACG
260 TCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * * * *
20240470 ATCGAGGGGG-TGGGGGGTGTGAGCACATGATATGCGATGGGTGTTGGTACTTGGCCCTTACATT
324 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
20240534 GG-CCCCTATCCCTCATGAAACCTCAAAAACTCACACCCCTTTAAAGCGCATTTGAGATTTTACA
389 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
20240598 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAG
454 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-
* * * * *
20240663 TCTTGCACACTTTGAGATTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * *
20240728 TCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCCTGAACTGTAAAAAGT
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *
20240792 TTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTGAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
20240857 GACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACT-TAAAAATATGAAGATGTACC
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCC
* * * *
20240921 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGC
777 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
*
20240986 CCGCTTGCCCG-CC-C-C----C--C------C----GC-T-C--A--T--TT--C-
842 CCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * ** * * ** * *
20241013 GTC---GGTTGGATCAGATTAAGGGTTACGGTAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* ** * * ** ** *
20241075 TCGATCCCTGGCTTGCGCATCCCATCGCTCTGGCTGGTTGAATGCCCGCAAGCTCGTTTCGT-GG
66 CCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
*
20241139 --GA--T--G---AC-----T-A-----AG-----GCATACGGAGTTCATTCCCAGTGTAAGATC
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** ** * *
20241179 GGATCAGACCAATGGTTATGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
20241244 TCATCAGGGCAGCATCG-TCGGAGCATCGTCGGAGAACCTGACC-AGCGGTATTGGGGTTCCGAC
260 TCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGAC
20241307 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
323 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
20241372 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
20241437 AGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
20241502 TCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATCACA
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * *
20241567 TCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCCCGAACCGCAAAAAGT
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
20241631 TTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTGAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
**
20241696 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACCCAAAAATATGAAGATGTGCCT
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
* * ** **
20241760 AAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGCACC
778 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
* * * *
20241825 CGTCTGCCC--AC-C-C----C--C------C--A--C-T-C-G-TTTC-GT--CA
843 CGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * ** * * * * *
20241854 -T-TTGGATCGGACC-G----AGGGTAACGACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGA
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* * * ** * * *
20241912 TCGATCCCTGGCTTGCGCATCCCACCGCTCTGGCCGGTTGAGCTCCCGCAAGCTCATTTCGTGGG
66 CCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
20241977 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * **
20242021 GGACCA-A-C---GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * * * * *
20242081 TCATTGGGGCACCATTGCAGGAGCATCGTCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACAA
260 TCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
20242146 TC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
325 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
20242210 GGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTATA
389 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
20242275 GGTTTACTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAAGGGTCACAAAA
454 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAA
*
20242339 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * * * *
20242404 TCTACCACGTTTGGGGCCAAAACTCCATT-GGAAAAAATTTTAAAAAATCCCGGACCGCAAAAGG
583 TCTACCAAGTTTGGGGCCAAAAATCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
20242468 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT-CCAATGAAACTTCACGTGAAGGCGTAA
647 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAA
* * *
20242532 GAGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATG-AAGAAATATTAAGATGTG
711 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA-AAATATGAAGATGTG
* * * *
20242596 CCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAAT
775 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
* * * * * *
20242661 GCCCGCCCGTCCGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCTA
840 GCCCG-CC-T--GCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * *
20242724 GTCTAAGATTAGACCAGACCGAGGGTTGTGACAGCAGGATCGGCAGCACGTAGAAGGGGACCCGG
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* * * *
20242789 CCGATCCTCGGCTTGCACATCCCACCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGG
66 CCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
20242854 TTGACTTAGGCATACGGAGTTCATTCGCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** *
20242919 GAACCAGACCAAAGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
*** * * * * **
20242984 TTGTCGGGGCACCATCG-TCGAAGCATCGTCGAAGAACCTGACCGACGGCATTAGGGTTCCGGTG
260 TCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
20243048 ATC-GGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
324 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
20243112 GGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
389 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
20243177 GGTTTCCTGCCAGTAGCCGTTAAAGTGTCTGGAATGGGAACACTTTTTTCAAATGGTCACAAAAT
454 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * * * *
20243242 CTCGTACACTTTGAGTTTTTAGCTGAATGTTTTTATGCATCCCAACAAAAATACAGGGATCACAT
519 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
** * * *
20243307 CTGGCAAGTTTGGGGCCCAAACA-CCTTCCAAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGT
584 CTACCAAGTTTGGGG-CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
20243371 TTCAAAAATCATGAAAAATAGAATACGAGTCGTCTTGCCGTGAAACTGCACGTGAAGGCTTAAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
20243436 GACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
*** * * *
20243501 AAACCCACCTACTGTCCTATCAATCCATGGCTTGTGCATCCCG-C-C-C--GTC--C-----G--
778 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
** * * * *
20243552 C-CC-G--C--CAACTCATTTCGTCGGTTGGCTTGGGCTTACGGAGTTCATTCCTA
843 CGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * **
20243602 GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAATAGGA-TGGACAGCACGTAGAGGGGGACCC-
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGG-CAGCACGTAGAGGGGGACCCG
* * * * * * *
20243665 AGTCGATCCCCGACTTGCCCATCCCACCCCTTTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTG
65 A-CCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
*
20243730 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A----C---C----A
128 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * **
20243777 ---GACC-GA--GA--GTTGCGGCAGCACATGTTGGGCTTGGGCATGTACTGGTGCCATATTTTT
193 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * * *
20243834 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGATGGCATTGGGGTTCCGAC
258 CTTCACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * **
20243899 GATC-GGGGGGTCGGGGGGTGTGCGCATATGATGTGCGATGGGTTTTGGTACTTGGCCCTTATAT
323 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
20243963 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGTGCATTTGAGATTTTAC
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * * * *
20244028 AAGTTTGCTGCCAATTGCCATTAAACTGTCTAAAATGGGGACACTTTTTTCAAGTGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * ** ** *
20244093 TCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGTGAAAAAAAATATGAGGACCACG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * ** *
20244158 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAGAAAATTTAAAAAAATCTTGAACCGCAAAAAGT
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *
20244223 TTCAAAAATCGTGAAAAATAGAATACGAGTCGTCTTGCCGTGAAACTGCACGTGAAGGCTTAAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** * *
20244288 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTTAGAAATATGAAGATGTACCT
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
* * **
20244353 AAACCCACCTACCGCCCTATCAATCCGTGGCTTGCGCATCCCG-C-C-C--GTC--C-----G--
778 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
* * * * * * * * *
20244404 C-CC-G--C--CAGCTCATTTCGTCAGCTAGCTTAGGCTTACGTAGTCCATTCCTA
843 CGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * ** * *
20244454 GTCTAAGATCGGACCAGACTGAGGGTTACAGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGG
1 GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
* ** * * *
20244519 TCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTTAGCGCCCGCACGCTCGTTTCGTGGG
66 CCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
20244584 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C---G---A-----A--CT---A--
130 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
20244629 -GACC--A---AGGGTTACGGCAGCACAT-CTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCT
195 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * *
20244687 TCGTCGGGGCACCTTCG-TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
260 TCACCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
20244751 ATC-GGGGGGCCGGGGGGTTGTGTGCATATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATAT
324 ATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
20244815 TGGCCCCCTATCTCTCATCAAACCTCATGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAC
388 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * * *
20244880 AGGTTTGCTGCCAATTGCCATTAAACTGTCTGAAATGGGGATACTTTTTTCAAAAGGTCACAAAA
453 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20244945 TCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGACCACG
518 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * ** * * * *
20245010 TCTGCCAAGGTTGGATCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAATCGTAAAAAGT
583 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * * * *
20245075 TTCAAAAATCGTAAAAAATAGAATACGAGTCGTCTTGCCATGAAACTGCGCGTGATGGCTTAAGG
648 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
20245140 GACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAAGAAATATGAAGATGTGC
713 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AA-AAATATGAAGATGTGC
* * *
20245203 CTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTGGTCGACGTAGTG
776 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG
*
20245268 CCCGCCCTTCCGCCCG-CCGACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
841 CCCG-CC-T--GCCCGTCCG-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* *
20245330 GTCTAAGATTAGACCAGATC-AAGGGTTGCGACAGCA
1 GTCTAAGATCAGACCAGA-CAAAGGGTTGCGGCAGCA
20245366 CATCCTGGGT
Statistics
Matches: 13675, Mismatches: 1711, Indels: 1006
0.83 0.10 0.06
Matches are distributed among these distances:
834 2 0.00
835 2 0.00
836 11 0.00
837 457 0.03
838 458 0.03
839 353 0.03
840 126 0.01
841 14 0.00
842 39 0.00
843 18 0.00
844 17 0.00
845 14 0.00
846 4 0.00
847 2 0.00
848 7 0.00
849 8 0.00
850 3 0.00
851 116 0.01
852 1197 0.09
853 4 0.00
854 2 0.00
855 6 0.00
856 4 0.00
857 8 0.00
858 3 0.00
859 11 0.00
860 115 0.01
861 302 0.02
862 149 0.01
863 32 0.00
864 42 0.00
865 82 0.01
866 36 0.00
867 132 0.01
868 6 0.00
869 40 0.00
870 7 0.00
871 409 0.03
872 333 0.02
873 344 0.03
874 103 0.01
875 393 0.03
876 136 0.01
877 280 0.02
878 388 0.03
879 110 0.01
880 230 0.02
881 42 0.00
882 37 0.00
883 157 0.01
884 390 0.03
885 660 0.05
886 204 0.01
887 6 0.00
888 37 0.00
889 1 0.00
890 8 0.00
891 2 0.00
892 3 0.00
893 7 0.00
894 2 0.00
895 3 0.00
896 11 0.00
897 10 0.00
898 15 0.00
899 1189 0.09
900 269 0.02
901 145 0.01
902 556 0.04
903 536 0.04
904 376 0.03
905 561 0.04
906 825 0.06
907 364 0.03
908 200 0.01
909 3 0.00
910 5 0.00
911 2 0.00
913 2 0.00
914 183 0.01
915 129 0.01
916 180 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GTCTAAGATCAGACCAGACAAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGA
CCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CACCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGC
CTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
Found at i:20242899 original size:26 final size:26
Alignment explanation
Indices: 20242863--20242915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20242853 GTTGACTTAG
*
20242863 GCATACGGAGTTCATTCGCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20242889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20242915 G
1 G
20242916 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20246148 original size:26 final size:26
Alignment explanation
Indices: 20246119--20246171 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20246109 GTTGACCTAG
20246119 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* * *
20246145 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20246171 G
1 G
20246172 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:20247060 original size:26 final size:26
Alignment explanation
Indices: 20247022--20247074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20247012 GTTGACTTAG
*
20247022 GCATACAATGTTCATTCCCAGTCTAA
1 GCATACAATGTTCATTCCCAATCTAA
20247048 GCATACGAA-GTTCATTCCCAATCTAA
1 GCATAC-AATGTTCATTCCCAATCTAA
20247074 G
1 G
20247075 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAATGTTCATTCCCAATCTAA
Found at i:20247510 original size:892 final size:889
Alignment explanation
Indices: 20245620--20251358 Score: 5976
Period size: 892 Copynumber: 6.4 Consensus size: 889
20245610 CCAGTAGCCA
*
20245620 TTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * *
20245685 TTGGGACCAAAACT-CTT--GAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTCCGAAAATA
66 TTGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
20245747 TTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20245812 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
20245877 ACCACCCTATCGATCCATGGCTTGCGCAACCCGTCTCTCTGGCCGACATAGTGCCCA--------
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGC
* * * * * * * *
20245934 CC-CAC--TCGTTTCATCGATTGGCCTCGGCATACGGAGTTCATTCCAAGTCTAAAATCGGATCA
325 CCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * ** ** **
20245996 GACCAAGGGTTGCAGCAGCAGGATCGATAGCACATAGAGGGGGACCAAGTTGATCCCCGACTTGC
390 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTTGC
* ** * *
20246061 GCATCCCGCCCCTTTGGCCGAATGAGCGCCCGCATGCTCATTTCGTGGGTTGACCTAGGCATACG
455 GCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
20246126 GAGTTCAATCCCAGTCTAAGCATATGGAGTTTATTCCCAGTCTAAGATC-AGACCGGACTGAGGG
519 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGG
* * *
20246190 TTGCGACAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
583 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA-
* * * * * * *
20246255 CGCATGAGCATTGCCGAAGAACCTTACCGGCGACCTTGGGGTTCCGGCAATCGAGGGGG-CGGGG
644 C-CAT---CA---CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGG
* * *
20246319 GGGTGTGAGCACATGATATGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTC
701 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
20246384 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTA
766 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
20246449 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
831 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
20246508 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * **
20246573 TTGGGGCCAAAAATCCTTCCAAAAAAACTTCAAAACATCCCAAACCGCAAAAAGTTTTGAAAATC
66 TT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
20246638 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* **
20246703 TGAATTTACAGGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * *
20246768 ACCACTCTATCGATCCACGGCTTGCGCATCCTATCTCTTTGGCCGGCGTAGAGCCCACCCGCCCG
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCG
* * *
20246833 CCCGCCCGTTAGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATC
324 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
*
20246898 AGACCGAGGGTTGCGGCAGCATGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTTG
389 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTTG
* * *
20246963 CGCATCCCGCCCCTCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
454 CGCATCCCGCCCCTCTGG-CGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
20247028 -AATGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGG
518 GGA-GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGG
* * * * *
20247092 GTTGC-AGCAGCACATGTTGGGTTCGGGCATGTG-TCGGTGCCGCATTTTTCTGC-ACAGGGGGA
582 GTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTC-GGGGCA
* * * * * * *
20247154 CCATCACCGGAGAACCTGACCAACAGCATTGAGGTTCTGACGTTTGGGGAGGCTGGGGGGGTGTG
644 CCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTG
* * *
20247219 CGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAAC
708 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
20247284 CTCGAGAA-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
773 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20247348 AAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGAACAC
838 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
20247400 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACATTTACCAAGG
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** *
20247465 TTGTGGCCAAAAGACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
66 TTG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * * *
20247530 GTGAAAAATAGAAAATGAGTCATCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
20247595 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20247660 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTGGTGCCCA--C-CCGC
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGC
* ** ** * ** *
20247722 CCGCTCGTTTCCAGTCTAAGATCGGACCGGACTGAGG-ACTACGGCAGTAGGA-TCGGCAG-C--
325 CCGCCCG-TT-C-GT-TTCG-TCGG-TTGG-CTTAGGCA-TACGG-AGT-TCATTC-CCAGTCTA
* *** * * ** * * * * * **
20247782 ACAT-AGAAGGGGACCCAGCCGATCCCCGGCTTGC-GCATC--CCGCCCCT----CTGG--CCGG
379 AGATCAG-ATCAGACCGAG--GGT-TGCGGC-AGCAGGATCGGCAGCACATAGAGGGGGACCCGG
** * * *** * * **** * * *
20247837 TTGAGCGCCCG---TACGC-T--CG-TTTTAT-G-GGTTGA-CTTAGGCATAC-GGTATTCACT-
439 CCGATC-CCCGACTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCCGCATGCTCGT-TTC-GTG
**** * * * *
20247890 CCCAGTC-TAAGCATATGGAGTTCATT--C---CT-A--AT-CTAAG---A-T--C-G-----GA
501 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * *
20247933 T-----CGGACCGAGGGTTGTGATAGCACATGCTGGGCTCGTGCCTGTGCTGGTGCCGCGTTTTT
566 TCGAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
20247993 CTTCGCCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGA
631 CTTCGTCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA
* * * *
20248057 TGATCGAGGGGGCCGGGGGGGGTTTGTGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTA
684 CGATCG-GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
20248122 TATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
747 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
20248187 TACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-
812 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
20248251 AAACCTTGTACAC
877 AAATCTTGTACAC
* * *
20248264 TTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
20248329 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAAATC
66 TT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * * *
20248394 GTGAAAAATAGAAAACAAGTCGACTTGCCATGAAACTTCACGTGCATGCTTAAGGGAACATTGTA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
20248459 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATCAAGATGTGCCTAAACCCACCT
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
20248524 ACCACCCTATCGATCCAGGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTG
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCC-G
** * * * *
20248589 CCCATCAGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGA-C
324 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * *** * * *
20248652 TGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGGGTACCTGGTCGATCCCCGACTT
389 -AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTT
* *
20248717 GTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
453 GCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
20248782 CGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGTCCAGACTGAG
517 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAG
* * *
20248846 GGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACA
581 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
** * * *
20248911 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGT
646 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
* * *
20248976 ACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTT
711 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
20249041 GAGAACTCACATCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
776 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
20249106 TGTCTGAAATGGGGACACTTTTTTCTAATGGTGACAAAATCTTGTACAC
841 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
20249155 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** **
20249220 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATC
66 TT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
20249285 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAACTTCACAGTGAATGTTTAAGGGACCATTG
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCAC-GTGAAGGCTTAAGGGACCATTG
*
20249350 TATGAATTTACAAGCCATAAAAAT-GCATCGGCATCATAGAAATTATGAAGATGTGCCT--ACCC
193 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAA-TATGAAGATGTGCCTAAACCC
* * * *
20249412 ACCTACCACCTTATCCGATCCACGGCTTGCACATCCC-TCTCTATTGGTCGGC-TCAGTTG-CC-
256 ACCTACCACCCTAT-CGATCCACGGCTTGCGCATCCCGTCTCT-CTGGCCGGCGT-AG-TGCCCA
* * * * * * * * *
20249473 TCCGCTTGTCTGCCCGCTTCGTTTCGTTGGTTAGCTGAAGGCACATATGGAGTTCATTCCTAG-C
317 CCCGC-CGCCCGCCCG-TTCGTTTCGTCGGTTGGCT-TAGG--CATACGGAGTTCATTCCCAGTC
* * * * * **
20249537 TAAGATCAGA-CTAGACCAAGGGTTG-GACAACAGGATAGGAACA-CACA-AAAGGGCAACCC-G
377 TAAGATCAGATC-AGACCGAGGGTTGCGGCAGCAGGATCGG--CAGCACATAGAGGGGGACCCGG
* * * * * * *
20249597 ACGATCCCAG-CTTGCGTAT-CCGCCCCTGT-GCGACTGAGCACCCGCTTGCTCGTTTCGGTGGG
439 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCCGCATGCTCGTTTC-GTGGG
* ** * *
20249659 TTTTTTCGACTAAGTTATACGGAGTTCATT-CCAGTCTAAGACCACACGGAGTTTCATTCCCAGT
503 ----TT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATACGAAG-TTCATTCCCAGT
* * * *
20249723 ATTAAGCATACGAAGTTCATTTTCAGTCTAAGACTGGACTGGACATAAGGTTTACTGGCAGCACA
560 -CTAAG-AT-CGAA---C-----C-G-----GAC----C--G-----AGGGTTGC-GACAGCACA
* * * **
20249788 TGCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCAACG
596 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAG-AAC-
* * *
20249853 TCGGAGAACCTGACCGTTCATTGGGGTTCCGACGATC-GGGGGCCGAGGGGGTGTGCGCACATGA
659 -C--TG-ACC-GA-CG-GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
*
20249917 TGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
717 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
20249981 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGT-TCTG
782 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
20250045 AAAT-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC
847 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20250086 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** *
20250151 TTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAAGC
66 TTGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
20250216 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20250281 TGAATTGACAAGCCAAAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20250346 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTCGTGCCCA-------C
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGC
* * * * * *
20250404 CCGTCCGTTCGTTTCGTCAGTTGGCTTAGTCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG
325 CCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * * * ** ** * * *
20250469 GACTGATGGTTGTGGCAGCAGGATTGATAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGC
390 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTTGC
* * * *
20250534 GCATCCCGCCCCT-TCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCGTAC
455 GCATCCCGCCCCTCT-G-GCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
20250598 GGAGTTCATTCCCAGTCCAAGCATAC-AGAGTTCTTTCCCAGTCTAAGATCAGAGCC-GATCGAG
518 GGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAG
* * * * *
20250661 GGTT-CTGATAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACTAGGGCA
581 GGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCA
* * *
20250724 CCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCTTTGGGGTTCAGGCGATCGGGGGGGCC
644 CCAT---C--A-C--CG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC
** * * * *
20250789 GAGGGGCATGTGCACAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTAT
697 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20250854 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
761 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
20250919 CAGTAGCCATGAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
826 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
20250983 TTTGAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCATGT
1 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
20251048 TTGGGACCAAAACTCCTTCCAAAAATATTTAAAAAAATCCCGTACCGTAAAAAGTTTCAAAAATC
66 TTGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
20251113 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAAGGACCATTGTA
130 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
20251178 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCATAAACCCACCA
195 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* *
20251243 ACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTG------C-CCGC
260 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGC
* *
20251301 CCG--C--TCGTTTTGTCAGTTGGCTTA-GCTATACGGAGTTCATTCCCAGTCTAAGATCAGA
325 CCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGA
20251359 CCGGATTGAG
Statistics
Matches: 4072, Mismatches: 544, Indels: 465
0.80 0.11 0.09
Matches are distributed among these distances:
852 58 0.01
853 3 0.00
855 1 0.00
857 4 0.00
858 11 0.00
859 4 0.00
860 9 0.00
861 22 0.01
862 5 0.00
863 39 0.01
864 370 0.09
865 100 0.02
866 10 0.00
867 3 0.00
868 8 0.00
869 5 0.00
870 2 0.00
871 2 0.00
872 3 0.00
873 3 0.00
875 6 0.00
876 12 0.00
877 19 0.00
878 16 0.00
879 11 0.00
880 7 0.00
882 3 0.00
883 3 0.00
884 2 0.00
885 2 0.00
886 4 0.00
887 5 0.00
888 136 0.03
889 21 0.01
890 208 0.05
891 396 0.10
892 526 0.13
893 275 0.07
894 138 0.03
895 55 0.01
896 78 0.02
897 342 0.08
898 23 0.01
899 8 0.00
900 8 0.00
901 3 0.00
902 5 0.00
903 324 0.08
904 2 0.00
907 1 0.00
909 1 0.00
912 1 0.00
914 1 0.00
915 7 0.00
916 4 0.00
917 11 0.00
918 26 0.01
919 42 0.01
920 33 0.01
921 25 0.01
922 14 0.00
923 8 0.00
924 5 0.00
925 21 0.01
926 7 0.00
927 63 0.02
928 20 0.00
929 79 0.02
930 44 0.01
931 175 0.04
932 8 0.00
933 11 0.00
934 97 0.02
935 49 0.01
936 19 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCC
CGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG
ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGACTTGCG
CATCCCGCCCCTCTGGCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
Found at i:20248806 original size:26 final size:26
Alignment explanation
Indices: 20248777--20248829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20248767 GTTGACTTAG
*
20248777 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20248803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20248829 G
1 G
20248830 ATCAGTCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20249660 original size:891 final size:886
Alignment explanation
Indices: 20247801--20251374 Score: 4134
Period size: 897 Copynumber: 4.0 Consensus size: 886
20247791 GGGACCCAGC
* * * * * **
20247801 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTTATGGGT
1 CGAT-CCCAGCTTGCGCATCCCGCCCCT-TAG-CGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
* * * *
20247866 TGACTTAGGCATACGGTA-TTCACTCCCAGTCTAAGCATATGGAGTTCATTCCTAATCTAAGATC
63 TGACTTAGGCATACGG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
20247930 GGAT-CGGAC-CGAGGGTT-GTGATAGCACATGCTGGGCTCGTGCCTGTGCTGGTGCCGCGTTTT
127 AGATCCAGACTCGAGGGTTACTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * *
20247992 TCTTCGCCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCAGCGGCATTGGGGTTCCGA
192 TCTTCGTCG-GG--GCA-C--C--A-CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * * * * *
20248057 TGATCGAGGGGGCCGGGGGGGGTTTGTGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTA
248 CGATCG-GGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
20248122 TATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
312 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
20248187 TACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-
377 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
20248251 AAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAGCAAAAATACAAGGATC
442 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
20248316 ATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
507 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * * * *
20248380 AAGTTTAAAAAATCGTGAAAAATAGAAAACAAGTCGACTTGCCATGAAACTTCACGTGCATGCTT
571 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** *
20248445 AAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATCAAGATGT
636 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* *
20248510 GCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCTGTCTCTCTGGTCGGCGT-A
701 GCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CTCTCTCTGGTCGGCGTCA
* *
20248574 GTGCCCGCCCGCCTGCCCATCAGC-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC-
764 GTGCCC-CGCG-CTG-CC--C-GCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
* * * * * *
20248637 AGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGGGTACCTG
823 AGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGAT-GG-AACACGCAGAGGGGAACC-C
*
20248702 GT
885 GA
* *
20248704 CGATCCCCGACTTGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
1 CGATCCCAG-CTTGCGCATCCCGCCCCT-TAGC-GGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
*
20248769 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
63 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
20248834 G-TCCAGACT-GAGGGTTAC-GATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
128 GATCCAGACTCGAGGGTTACTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
20248896 CTTCGTCGGGGCA-CA-ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
193 CTTCGTCGGGGCACCACATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * *
20248959 GCCCG-GGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCC
258 GCCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
20249023 TATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGC
323 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
20249088 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTGACAAAATCTTGTAC
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
20249153 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
453 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
**
20249218 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA
518 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
20249283 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAACTTCACAGTGAATGTTTAAGGGACCAT
583 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCAC-GTGAAGGCTTAAGGGACCAT
*
20249348 TGTATGAATTTACAAGCCATAAAAAT-GCATCGGCATCATAGAAATTATGAAGATGTGCCT-ACC
646 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAA-TATGAAGATGTGCCTAACC
* * *
20249411 CACCTACCACCTTATCCGATCCACGGCTTGCACATCCCTCTCTATTGGTCGGC-TCAGTTGCCTC
709 CACCTACCACCCTAT-CGATCCACGGCTTGCGCATCCCTCTCT-CTGGTCGGCGTCAG-TGCC-C
* * * *
20249475 CGCTTGTCTGCCCGCTTCGTTTCGTTGGTTAGCTGAAGGCACATATGGAGTTCATTCCTAG-CTA
770 CGC--G-CTGCCCGCTTCGTTTCGTCGGTTGGCT-TAGG--CATACGGAGTTCATTCCTAGTCTA
* * * * * * *
20249539 AGATCAGACTAGACCAAGGGTTG-GACAACAGGATAGGAACACACAAAAGGGCAACCCGA
829 AGATCAGACTGGACCGAGGGTTGCGGCAGCAGGAT-GGAACACGC-AGAGGGGAACCCGA
* * * *
20249598 CGATCCCAGCTTGCGTAT-CCGCCCCTGT-GCGACTGAGCACCCGCTTGCTCGTTTCGGTGGGTT
1 CGATCCCAGCTTGCGCATCCCGCCCCT-TAGCGGCTGAGCGCCCGCATGCTCGTTTC-GTGGG--
* ** * *
20249661 TTTTCGACTAAGTTATACGGAGTTCATT-CCAGTCTAAGACCACACGGAGTTTCATTCCCAGTAT
62 --TT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATACGGAG-TTCATTCCCAGT-C
* **
20249725 TAAGCATACGAAGTTCATTTTCAGTCTAAGACTGGACTGGACATAAGGTTTACTGGCAGCACATG
120 TAAG-AT-C--AG---A---TC---C--AGACT---C--G-----AGGGTTACTGATAGCACATG
* * * *
20249790 CTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCAACGTC
160 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GG--GCA-C--C--A-CATCGTC
**
20249855 GGAGAACCTGACC-G-TTCATTGGGGTTCCGACGATC-GGGGG-CCGAGGGGGTGTGCGCACATG
216 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGAGGGGGTGTGCGCACATG
**
20249916 ATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
281 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
20249980 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGT-TCT
346 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
20250044 GAAAT-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT
411 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
20250107 TTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCCA
476 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* ** *
20250172 AAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAAGCGTGAAAAATAGAAAACGAGTC
541 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
20250237 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCAAAAAAA
606 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
20250302 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
671 TGGCATTGGCACATAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGC
* * * *
20250367 TTGCGCATCCCGTCTCTCTGGCCAGCGTC-GTGCCCAC-C-C-GTCCG-TTCGTTTCGTCAGTTG
735 TTGCGCATCCC-TCTCTCTGGTCGGCGTCAGTGCCC-CGCGCTGCCCGCTTCGTTTCGTCGGTTG
* * * * *
20250427 GCTTAGTCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGATGGTTGTGGCAGCAGGA
798 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGA
* *
20250492 TTGATAGCACGCAGAGGGGGACCCGA
863 TGGA-A-CACGCAGAGGGGAACCCGA
* * * *
20250518 CCGATCCCTGGCTTGCGCATCCCGCCCCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
1 -CGATCCC-AGCTTGCGCATCCCGCCCCTT--AGCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
* * * *
20250583 TTGACTTAGGCGTACGGAGTTCATTCCCAGTCCAAGCATACAGAGTTCTTTCCCAGTCTAAGATC
62 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
20250648 AGAGCC-GA-TCGAGGGTT-CTGATAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
127 AGATCCAGACTCGAGGGTTACTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * *
20250710 TCTTC-ACTAGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCTTTGGGGTTCAG
192 TCTTCGTC-GGGGCACCA-CATC---G--TCG---GAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * * * *
20250774 GCGATCGGGGGGGCCGAGGGGCATGTGCACAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
247 ACGATCGGGGGGCCCGAGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
20250839 ATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
311 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
20250904 TTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCAC
376 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
20250969 AAAATCTTGTACACTTTGAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGAT
441 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
20251034 CACGTCTACCATGTTTGGGACCAAAACTCCTTC-CAAAAATATTTAAAAAAATCCCGTACCGTAA
506 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCCCGAACCGTAA
* *
20251098 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
570 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
20251163 GAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATG
635 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG
* * * * *
20251228 TGCATAAACCCACCAACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGT-
700 TGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-TCTCTCTGGTCGGCGTC
* * *
20251292 AGTG---C-C-C-GCCCGC-TCGTTTTGTCAGTTGGCTTA-GCTATACGGAGTTCATTCCCAGTC
763 AGTGCCCCGCGCTGCCCGCTTCGTTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCTAGTC
* **
20251349 TAAGATCAGACCGGATTGAGGGTTGC
827 TAAGATCAGACTGGACCGAGGGTTGC
20251375 AGCACCAGCA
Statistics
Matches: 2325, Mismatches: 232, Indels: 238
0.83 0.08 0.09
Matches are distributed among these distances:
880 4 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 5 0.00
887 3 0.00
888 58 0.02
889 5 0.00
890 201 0.09
891 185 0.08
892 102 0.04
893 204 0.09
894 133 0.06
895 39 0.02
896 77 0.03
897 318 0.14
898 12 0.01
899 5 0.00
900 6 0.00
901 1 0.00
902 9 0.00
903 170 0.07
906 1 0.00
909 1 0.00
910 2 0.00
912 2 0.00
913 1 0.00
914 1 0.00
915 7 0.00
916 4 0.00
917 11 0.00
918 26 0.01
919 42 0.02
920 34 0.01
921 28 0.01
922 14 0.01
923 9 0.00
924 5 0.00
925 21 0.01
926 7 0.00
927 50 0.02
928 22 0.01
929 77 0.03
930 43 0.02
931 178 0.08
932 7 0.00
933 8 0.00
934 100 0.04
935 45 0.02
936 20 0.01
937 1 0.00
938 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CGATCCCAGCTTGCGCATCCCGCCCCTTAGCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CCAGACTCGAGGGTTACTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCACATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCTCTCTCTGGTCGGCGTCAGTGCCCCGCGCTGCCCG
CTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGA
GGGTTGCGGCAGCAGGATGGAACACGCAGAGGGGAACCCGA
Found at i:20254411 original size:901 final size:899
Alignment explanation
Indices: 20251408--20257246 Score: 7542
Period size: 903 Copynumber: 6.5 Consensus size: 899
20251398 AGCATGATGT
* *
20251408 GCGATCGGGGCGGCCAGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGTCCCT
1 GCGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
20251473 TATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
63 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
20251538 TTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGGAATGGGAACACTTTTTTCAAATGGTCA
128 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
20251603 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCAAGCCAACAAAAATACAAGGA
193 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* ** * * *
20251668 TCACATCTA--ATTCTTTGGGGCCAAAACTCCTTCCAAAAAAATTATAAAAAATCCTGAACCATA
258 TCACGTCTACCAAGC-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATA
* * *
20251731 AAAAGTTTCAAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAAGGC
322 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
20251796 TTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
387 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
20251861 GTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGTGT
452 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGT
* * *
20251926 AGTGCCCGCTTTCCCGCCAGCCCGCTCGTTTCATC-AGTTGGCTTAGGCATACGAAGTTCATTCC
517 AGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * *
20251990 CAGTCTATGATCGGACCAGACCGATGGTTGCGGTAGCAGGATTGGCAGCTCACAGAGGGGGACCC
577 CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * * * * * *
20252055 GGCCGATCCTCGGCTTGCACATCCTGCCTCTCTGGCTGGTTGAGCGCCCGCACACTCGTTTCATA
642 GATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * **
20252120 GGTTAACTTACGCATACAGAGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCATAGTCTAAGA
707 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
20252185 TCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTT
772 TCAGACCGGACTGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * * * ** *
20252250 CTTCCCCGGGGCACCATCGCCGGAGCATAGCCGGAGAACCTAACTAGCGACATTGGGGTTCCG
837 CTTCATCGAGGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * *
20252313 GTGATCGGGCGGGCCGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTAT
1 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
20252378 ATTGGCCCCCTGTCCCTTATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGACATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
20252443 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-AGCA
131 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-CA
*
20252507 AAATCTTGTACACTT-GAAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGAT
195 AAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * *
20252571 CACGTCTACCAAGTTTGGGACCAAAACTTCTTTCGAAAAAATTTTGAAAAATCCCGAACCACAAA
259 CACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAA
* ** *
20252636 ATGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
324 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
20252701 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGT
389 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
20252766 GCCTAAACCCACCTACCACCCTTTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAG
454 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAG
* *
20252831 TGCTCGCCCGCCCGTCCGCTCGCTCGTTTCGTC-AGTTTGCTTAGGCATACGGAGTTCATTCCCA
519 TGCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * * * *
20252895 TTCTATGTTCCA-ACCGAATCAAGGGTTGTGGCAGCAGGATCAGCAGTATGCAGAGGGGTACTCG
579 GTCTAAGAT-CAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * *
20252959 GTCGATCCTCAGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGG
643 ATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * **
20253024 ATTGACTTAGGCATATGAAGTAAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
708 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
20253089 CAGACCGAACCGTAGGTTGC-GACAGCACATGTTGGGCTCGGGCAAGTGCTGGTACCGTATTTCT
773 CAGACCGGACTGAAGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
20253153 CTTCGTCGGGGCACCATCTTCGGAGCATCA-TCGAAGAACCTGACCGACGGCATTGGGGTTCCG
837 CTTCATCGAGGCACCATCGTCGGAGCAT-AGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
** * **
20253216 GCGATCAAGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGACCGGTGCTGGTACTTGGCCCTTA
1 GCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
20253281 TATTGGCCCCCTCTCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTT
65 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
20253346 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCCCA
130 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
20253411 AAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATC
195 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
20253476 ACGTCTA-CAATG-TCTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAA
260 ACGTCTACCAA-GCT-TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAA
*
20253539 AAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
323 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
20253604 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
388 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * *
20253669 TGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTA
453 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTA
* * * * *
20253734 GTGCCCGCCCGTCTGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
518 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
*
20253799 AAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGA
583 AAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGA
** * * * ** * *
20253864 TCCTCACCTTGCACATCCCGTCCCTCTGGTCGATTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
648 TCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAA
*
20253929 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-TGACGTTCATTCCCAGTCTAAGATCAGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATCAGA
* * * *
20253993 TCGGACTGAAGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCAGGTGCCACATTTTTCTTCA
777 CCGGACTGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* *
20254058 TCGAGGCACCATCGTCGGAGCATAGTCGGAGAACTTGACCGGTGGCATTGGGGTTCCG
842 TCGAGGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * * *
20254116 ACGATCGGGGGGGCTGGGGGAGGTGTGCGCACACGACGTGCTATGGGTGCTGGTACTTGGCCCTT
1 GCGATCGGGGGGGC-CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
20254181 ATATTGGCCCCATATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATT
64 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
20254246 TTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
129 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
20254311 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGAT
194 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * ***
20254376 CATGTCTACCAAGCTTGGGGTCAAAACTCCTTCCGAGAAAATTTTAAAAAATCCCAAACTGCAAA
259 CACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAA
** * * * *
20254441 AAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCGCGTGAAGGCAT
324 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
20254506 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGT
389 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
20254571 GCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAA
454 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAG
* * *
20254636 T----GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
519 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * *
20254697 AGATCGGACTGGATCGAAGGTTGCAGTAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGAT
584 AGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
* * * * * * * *
20254762 CCCCGGCTTACGCATCCCGCCCCTCTAGCCGGCTGAACGGCCGCACGCTCATTTCGTAGGTTGAC
649 CCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * * *
20254827 ATAGGCAGACGTAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAAC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * ** * *
20254891 CAGAC-CAACGGTTGCGGCAGCACATGCTAGGCTCGGTAATGTGCTGGTGCCACATTTTTCTTCG
778 CGGACTGAA-GGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
**
20254955 TCGAGGCACCA---T-----C---GTCGGAGAACCTGACCGATGGCATTGGGGTTCCG
842 TCGAGGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * * *
20255002 TCGGTC-GAGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
1 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
20255066 ATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
20255131 ACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACA
131 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACA
* * * * * *
20255196 AAATATTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATACCAACAAAAATATAGGGATC
195 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
20255261 GCATCTACCAA-CTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCCGAACCATAAA
260 ACGTCTACCAAGC-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAA
* *
20255325 AAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
324 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
20255390 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA-AAATATGAAGATGT
389 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
20255454 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGTCGGCATAG
454 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAG
* *
20255519 TGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
519 TG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
20255584 TCTAAGATCAGACC-GAACAGAGGGTTAG-GGCAACATGATTGGCAACACGCAGAGGGGGACCCG
580 TCTAAGATCAGACCGGATC-GAGGGTT-GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * *
20255647 ATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
643 ATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * *
20255712 GTTAACTTAGGCGTATGCAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGAT
708 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * *
20255777 CGGATCGGATTGAGGGTTACAACAGCAGATGCTAGGCTCGGGCATGTGTTGGTGCCCCA--TTT-
773 CAGACCGGACTGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * *
20255839 TTC-T----------TCGTCGGAGCATCGTCAGAGAACCTGACCGGTGGCATTGGGGTTCCG
838 TTCATCGAGGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
20255890 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
1 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
20255955 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
20256020 ACAGGTTCGCTACCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
131 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
20256085 AATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCTAGCAAACATACAAGGATCA
196 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
20256150 CATCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
261 CGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAA
* * * ** *
20256215 GTTTTAAAAATCATGAAAAACAGAAAATAAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAA
326 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
20256280 GTGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
391 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * *
20256345 CGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT-TCCGTCTCTCTGGCCGACGTAGT
456 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT-CGTCTCTCTGGCCGGCGTAGT
*
20256409 GCCCACCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
520 G----CCCGCCCGCCCG--C-CC-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * * *
20256474 CAATCTAAGATCGGACCAGCCCAAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCC
577 CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * **
20256539 GATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCATGCACGCTCGTTTCGTG
642 GATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
20256604 GGTTAACTTAGGCATACAGAGTTGATTACCAGTCTAATCATACGGAGTTCATTCCCAATCTAAGA
707 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
20256669 TCAGACCAGA-TCAAGAGTTG-TGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTT
772 TCAGACCGGACTGAAG-GTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * ** * *
20256732 TTCTTCACCGAGGCACCATCGTCTGTGCATCGTCGGAGAACCTAACTAGCGACATTGGGGATCCG
835 TTCTTCATCGAGGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
20256797 GTGATCGGGTGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG-TAGGTACTTGGCACTTA
1 GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTA
* **
20256861 TATTGGCCCCCTATCCCTCA-CAAACCTCAAGAACTCACACCCCCAGAAAGAGCATTTGAGATTT
65 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
20256925 TATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACA
130 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
20256990 AAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAAGATC
195 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * * *
20257055 ATGTCTACAAAGTTTGGAGCCAAAAATCCTTCC-AAAAATATTTTAAAAAATCTCGAACCGTAAA
260 ACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCATAAA
20257119 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAG-GAAGGCT
324 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-GTGAAGGCT
* *
20257183 TAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-CAGAAATTTGAAGAT
388 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGAT
20257247 CCCCGGCTTG
Statistics
Matches: 4311, Mismatches: 538, Indels: 169
0.86 0.11 0.03
Matches are distributed among these distances:
880 1 0.00
883 220 0.05
884 236 0.05
885 7 0.00
886 36 0.01
887 1 0.00
888 273 0.06
889 247 0.06
890 5 0.00
891 252 0.06
892 9 0.00
893 243 0.06
894 3 0.00
895 3 0.00
896 6 0.00
897 278 0.06
898 2 0.00
899 12 0.00
900 316 0.07
901 458 0.11
902 238 0.06
903 534 0.12
904 469 0.11
905 18 0.00
906 327 0.08
907 117 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTG
CCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
TCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACTGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGA
GGCACCATCGTCGGAGCATAGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
Found at i:20256652 original size:26 final size:26
Alignment explanation
Indices: 20256616--20256666 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20256606 TTAACTTAGG
* *
20256616 CATACAGAGTTGATTACCAGTCTAAT
1 CATACAGAGTTCATTACCAATCTAAT
* *
20256642 CATACGGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATTACCAATCTAA
20256667 GATCAGACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTACCAATCTAAT
Found at i:20257347 original size:26 final size:26
Alignment explanation
Indices: 20257311--20257365 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
20257301 GTGGTTCACT
*
20257311 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAATC
20257337 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATTCCCAATC
20257363 TAG
1 TAG
20257366 ATCGATCAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAATC
Found at i:20258244 original size:26 final size:26
Alignment explanation
Indices: 20258214--20258266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20258204 GTTGACTTAG
*
20258214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20258240 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20258266 G
1 G
20258267 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20259156 original size:26 final size:26
Alignment explanation
Indices: 20259116--20259171 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20259106 GTTGACTTCT
20259116 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
20259142 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
20259168 TAAG
1 TAAG
20259172 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:20260065 original size:26 final size:26
Alignment explanation
Indices: 20260028--20260080 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20260018 GTTGACTTAG
*
20260028 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20260054 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20260080 G
1 G
20260081 ATTGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20261870 original size:26 final size:26
Alignment explanation
Indices: 20261840--20261895 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
20261830 ATTGACTTAG
*
20261840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20261866 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20261892 -CATA
1 GCATA
20261896 AGACCGGACC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20268115 original size:26 final size:26
Alignment explanation
Indices: 20268079--20268131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20268069 GTTGACTTAG
*
20268079 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
20268105 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20268131 G
1 G
20268132 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20269996 original size:159 final size:158
Alignment explanation
Indices: 20269699--20270066 Score: 432
Period size: 159 Copynumber: 2.3 Consensus size: 158
20269689 TCCGTTCGCT
** * * * ** *
20269699 CGCTCGTTTCGCCGGTTGGCTTAGCCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * ** **
20269764 AGGGTTGCGGTGGCAGGATCGGTAGTACGCAGAAGGGGACCCGACCGATCCCCGGCTTTTGCATC
66 AAGGTTGCGGTAGCAGGATCGGTAGCACGCAAAAGAAGACCCGACCGATCCCCGGCTTGCGCATC
* *
20269829 ATGCCCCTCTTGCTGCCTGAGCGCCCGCA
131 AT-CCCCTCTAGCCGCCTGAGCGCCCGCA
**
20269858 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * *
20269923 AAGGTTGCGGTAGTAGGATCGGTAGCGCGTAAAAGAAGACCCGATCGATCCCCGGCTTGCGCATC
66 AAGGTTGCGGTAGCAGGATCGGTAGCACGCAAAAGAAGACCCGACCGATCCCCGGCTTGCGCAT-
** * * *
20269988 CCAT-CCCTCTAGCCGGTTGGGTGCCTGCA
130 -CATCCCCTCTAGCCGCCTGAGCGCCCGCA
*
20270017 CGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
20270067 CACATGCTAG
Statistics
Matches: 177, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
159 174 0.98
161 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AAGGTTGCGGTAGCAGGATCGGTAGCACGCAAAAGAAGACCCGACCGATCCCCGGCTTGCGCATC
ATCCCCTCTAGCCGCCTGAGCGCCCGCA
Found at i:20273567 original size:26 final size:26
Alignment explanation
Indices: 20273531--20273583 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20273521 GTTGACTTAG
20273531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20273557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20273583 G
1 G
20273584 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20274456 original size:26 final size:26
Alignment explanation
Indices: 20274427--20274479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20274417 GTTGACTTAG
20274427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20274453 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20274479 G
1 G
20274480 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20275350 original size:26 final size:26
Alignment explanation
Indices: 20275314--20275370 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
20275304 GTGGGTTGAC
*
20275314 CTAACCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
20275340 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
*
20275366 GTAAG
1 CTAAG
20275371 ATCGAACCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:20277236 original size:889 final size:884
Alignment explanation
Indices: 20272419--20278448 Score: 6806
Period size: 889 Copynumber: 6.8 Consensus size: 884
20272409 GGACCCGATT
* * * * * * * * * *
20272419 GATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCTCTTTTCATT
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * ** * *
20272484 GGTTGGCTTAAGAATACGGAGTTCATTTCTAGTCTAAGATCAGACC-GAACTGAGGGTTATGGCA
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAG-ACCAAGGGTTACGGTA
* * *
20272548 ACAGGATCGGCAGCACGCAGAGGGGGA--C--CCG------GGCTTGCGCGTCCCT-CCCCTCTG
130 GCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTG
* * * * *
20272602 GCCGCCGAGCTCTCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
194 GCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
20272667 AAGCATATGGAGTTCATTCCCAATCGAAGATCGGATCGGACCGAGGGTT-CTGGCAACACATACT
259 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGCAGCACATGCT
* * ** *
20272731 GGGCTCGGGCATGTGCTGGTACCTTATTTTTCTTCGTCGGGGCA-C--CAT-----CA-C-CGAA
323 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCGGA
* * * * *
20272786 GAACTTAACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGGGGCTGTGCGCACATGATG
388 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
20272851 TGCGATGGGTGCTGGTACTTGGGCCTTATATCGGCCCCCTATCCCTCATCAAACCTCTAGAACGC
453 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
20272916 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGT-TCGA
518 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA
* *
20272980 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
582 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
20273045 TTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTTCGAA
647 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG--
*
20273110 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCT
710 --AA---TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
20273175 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
770 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20273240 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACTACTCTATC
835 GCATTGGCACGTAGAAATATGAAGATGTGCCT-AA--CACCTACCACCCTATC
* * * *
20273293 GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCACCCGCTCGTTC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCGCTCGTTT
* * *
20273358 CGTCGGTTGG-TTAGGCATACTGAGTTCATTCCCA-ATCTAAGATCAGACCAGATCGAGGGTTAC
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCAGACCAGACCAAGGGTTAC
* * * * * * *
20273421 GATAGCAGGAT-AGGCAGCACGCAGATGGGGACTCGGTCGATCCGCGGCTTGCGCATCCCGCACC
126 GGTAGCAGGATCA-GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCC
* * *
20273485 TCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCC
190 TCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
20273550 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGCACA
254 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * **
20273615 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGATGCA-C--CATC---G--T--
319 TGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCG
* * * *
20273670 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGAGGGGTCC-GGGGGGTGTGCGAACAT
384 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* * *
20273734 GATGTGCGATGGGTGCTGGTACTTCGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
449 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
20273799 ACTCACACTCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTC
514 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
20273864 TGAAATGGGGACAC-TTTTTCAAATGGTCTCTAAATCTTGTACACTTCGAGTTTTTAGTTGAATT
579 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
20273928 TTTTTCTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATTCTTCC
644 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
20273993 GAAAAAATTTTAAAAAATCTCGAGCCG-CAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAG
709 G----AA---TAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
20274057 TCTTCTTGCCATGAGACTTCACGTGAAGGCTTTAAGGGACCATTGTATGAATTTACAACCCATAA
766 TCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAA
20274122 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
830 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AA--CACCTACCACCCTATC
* *
20274180 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACATAGTGCCCGCCCGCTCGCCCTTCCGCCC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CG--C--CCG--C
** * * * *
20274245 GTTCGTTTCGTTAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
56 --TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAA
* * * * * * * * * *
20274310 GTGTTGCAGTAGCCA-AATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCAGCATGCGCATC
119 GGGTTACGGTAG-CAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
* * * *
20274374 CTGCCCCTCAGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
183 CTGCCCCTCTGGC-CGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
20274439 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
247 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * *
20274504 TAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGG
312 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGG
* * *
20274569 AGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGA
377 AGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGT
* * * * *
20274634 GCACACATGATGTGCGATGAGCGCTGGCACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAA
441 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
20274699 CCTCGAGAACTCACAGCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
506 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
20274764 AAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTA
571 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
20274829 GCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCGAAAA
636 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
20274894 CACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
701 CTCCTTCCG----AA---TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
20274959 AAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
759 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
20275024 CCCTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
824 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AA--CACCTACCACCCTATC
*
20275088 GATCGACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCTCGTTTCGTC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* * ** * * * *
20275149 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATGGTAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTACGGTAG
* * ** * *
20275214 CAGGTTCAGCAGCACGTAGA-TAGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
131 CAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
** * ** *
20275278 CGGCTGAGCGCCTACACGCTCGTTTCGTGGGTTGACCTAACCATACAGAGTTCATTCCCAGTCTA
196 C-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
20275343 AGCATACAGAGTTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGG
260 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
20275408 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCGCCATCACCGGAGCATCGCCGGAG
325 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCG-CGGAG
* *
20275473 AACCTGACCTG-CGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGTGTGCGCACATGATG
389 AACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
20275535 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAA-CTACGAGAACT
453 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACT
*
20275599 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
517 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* ** *
20275664 AATGGGGACACTTATTTCAAATGGGGACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAA-TTTT
582 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** *
20275728 TTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTTTGGCTAAAACTCCTTCCAAA
647 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC---
* * * * ** *
20275793 AAAATTTAAAAAAATCCCAAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
709 -GAA--T-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * * *
20275858 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGATCGTTGTATGAATTTACAAGTCATAAAAGTG
770 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
20275923 GCATTGGCATGTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATC
835 GCATTGGCACGTAGAAATATGAAGATGTGCC-TAA--CACCTACCACCCTATC
** * *
20275976 GATCCACGGCTTGCGCATCCCGTCTCTCT----G--GT-G-G---GCGGGCCTGCTCGTTTCATC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
** * * *
20276030 GGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGATCAGACCAAGGGTTATGGTAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTACGGTAG
* * * * * * *
20276095 CAGGATCGGTAGCACGCAGGGGGGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGT
131 CAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-
* * * *
20276160 CAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
195 CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * ** *
20276225 AGCGTACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCAACAGCACATGTTGG
260 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
20276290 GCTC-AGGCATGTGCTGGAGTCACATTTTACTTCGTCGGGGCACCATCATCAGAGCATCGCTGAG
325 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCGGAG
* * *
20276354 AACCTGACCGGCGACATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
389 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
20276419 CCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTTGATAACTCA
454 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
20276484 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
519 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20276549 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
584 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20276614 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCG-A-A
649 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAATA
* * * * *
20276677 AAAAATC-CTGAACTGTAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCCTGGCAT
714 AAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
20276741 TAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAGTTTACAAGCCATAAAAATGGCATTGGC
778 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
20276806 ATGCAGAAATATGAAGATGTGCCTAA-ACC-GCCACCCTATC
843 ACGTAGAAATATGAAGATGTGCCTAACACCTACCACCCTATC
* * *
20276846 GATCCACAGCTTGTGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCTCCCACCCGCTC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--------CCCGCTC
* *
20276911 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTAGACCAGACCAAGGGT
58 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGT
* * * * * * *
20276976 TGCGGCAGCAGGATCAGCAGCACACAGAGGGTGACCCAGCCGATTCTCGGCTTGCGCATCCTGCC
123 TACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCC
* * *
20277041 CCTCTGGCCTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCTTTC
188 CCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
20277106 CCAGTCTAAGCATACGAATTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCA
252 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * ** *
20277171 CATCCTGGGCTCGAGCATGTGCTGGGGCCACATTTTTCTTCATCGAAGCACCACCATCGGAGCAT
317 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCAT
* * * * *
20277236 CACCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCAGGGGGGTCGGAGGGGTGTGCGCA
382 C-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCA
*
20277301 C---A--T--GAT--GTGC----A-----CCCTTATACTGGCCCCCTATCCCTCATCAAACCTCG
446 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
20277348 AGAACCCTCACCCACTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
511 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
20277413 ATCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGA
576 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
20277478 ATTTTTTTGTGCATGCCAACAAATATACAAGGATCACATCTACCAAGTTTGGGGCCAAGACACCT
641 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
20277543 TCCTAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATGGAAAA-G
706 TCC----GAA---TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
20277607 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
764 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
20277672 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATC
829 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AA--CACCTACCACCCTATC
* * * * * * *
20277731 AATACACGGCTTACGCATCCCGTCTCTCTGG-C--C--A--GCCTGCCAGCCCGTTTGTTTCGTC
1 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* ** * * * * * *
20277789 GGTTGGGTTAGTTATACGGAGTT-ATTCACA-ATCTAAGATCAAATCGGA-CAATGGGTTATGGG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCAGACCAGACCAA-GGGTTACGGT
* * * * * * * ** *
20277851 AGCAAGATCAGCAACACACAGAGGGGGACTCGGTCGATTCCCAGCTTATGCATCGC-GCCACTCT
129 AGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CTGCCCCTCT
* * **
20277915 GGCCGGCTGATG-ACCTGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
193 GGCC-GCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
20277979 TCTAAGCATATGAAGTTCATTCCCAGCCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCGGAC
256 --T---C---T-AAG--CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
20278044 CAGACCGAGGGTTACGGTAGCATATGCTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTC-A
295 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * *
20278108 CTGGGGCACCATCGTTGAAACATCGTCGGAGAACCTGACTGACGGCATTGGGGTTTCGGTGATCG
360 C-GGGGCACCATCATCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
* * *
20278173 GGGGTGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTGG
423 GGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
20278238 CCCCTTATCCCTCATCATACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGG
487 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
20278303 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCTCTAAATCT
552 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20278368 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATTT
617 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
20278433 ACCAAGTTTGGGGCCA
682 ACCAAGTTTGGGGCCA
20278449 TCCCACCCCT
Statistics
Matches: 4444, Mismatches: 547, Indels: 290
0.84 0.10 0.05
Matches are distributed among these distances:
868 4 0.00
869 132 0.03
870 71 0.02
871 4 0.00
872 215 0.05
874 39 0.01
875 132 0.03
876 3 0.00
877 71 0.02
878 36 0.01
879 2 0.00
880 100 0.02
881 175 0.04
882 209 0.05
883 201 0.05
884 67 0.02
885 43 0.01
886 191 0.04
887 295 0.07
888 439 0.10
889 476 0.11
890 65 0.01
891 240 0.05
892 78 0.02
893 1 0.00
894 2 0.00
895 149 0.03
896 270 0.06
897 4 0.00
898 1 0.00
899 4 0.00
900 2 0.00
901 2 0.00
902 2 0.00
903 3 0.00
904 2 0.00
905 4 0.00
907 42 0.01
908 273 0.06
909 185 0.04
910 5 0.00
914 205 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCAAGGGTTACGGTAG
CAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
CGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAATAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
TAGAAATATGAAGATGTGCCTAACACCTACCACCCTATC
Found at i:20277995 original size:26 final size:26
Alignment explanation
Indices: 20277958--20278036 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20277948 GTTGACTTAG
*
20277958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
20277984 GCATATGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20278010 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20278036 G
1 G
20278037 ATCGGACCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20278880 original size:454 final size:459
Alignment explanation
Indices: 20278020--20278902 Score: 1321
Period size: 454 Copynumber: 1.9 Consensus size: 459
20278010 GCATACGTAG
* * * *
20278020 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCATATGCTAGGCTCGAGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTAGGCTCGAGCATG
** *
20278085 TGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATCGTTGAAACATCGTCGGAGAACCTGACTGA
66 TGCTGGTGCCACATTTTTCTTCACTGGGGCACCATC--TG----A-CG-CAGAGAACCTGACTGA
* * ** * *
20278150 CGGCATTGGGGTTTCGGTGATCGGGGGTGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
123 CGGCATAGGGGTTCCGACGATCGGGGGTGCCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTG
* *
20278215 CTGGTACTTGGCCCTTCTATTGGCCCCTTATCCCTCATCATACCTCGAGAACTCACACCCCCTTA
188 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* **
20278280 AAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCT
253 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAAT
* * *
20278345 TTTTTCAAATGGTCTCTAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
318 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
*
20278410 AAAAAAATACAAGGATCACATTTACCAAGTTTGGGGCCATCCCACCCCTCTGGCCGGTTGAGCGC
383 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCATCCCACCCCTCTGGCCGGTTGAGCGC
20278475 CCGCACGCTCGT
448 CCGCACGCTCGT
* * * *
20278487 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATACTGGGCTTGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTAGGCTCGAGCATG
* * *
20278552 TGCTGGTGCCACATTTTTCTTCGCTTGGGCACCATC-G-C-CAGAGAACCTGA-TCGGCGGCATA
66 TGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCTGACGCAGAGAACCTGACT-GACGGCATA
*
20278613 GGGGTTCCGACGATCGGGGG-GCC-GGGGGGGTGTGCGCACATGATTTGCGATGAGTGCTGGTAC
130 GGGGTTCCGACGATCGGGGGTGCCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTAC
*
20278676 TTGGCCCTTATATTGG-CCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
195 TTGGCCCTTATATTGGCCCCT-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
20278740 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAATTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTC
*
20278805 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
*
20278870 ATACAAGGATCACATCTACCAGGTTTGGGGCCA
389 ATACAAGGATCACATCTACCAAGTTTGGGGCCA
20278903 AAACTCCTTC
Statistics
Matches: 380, Mismatches: 34, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
453 4 0.01
454 246 0.65
455 4 0.01
456 35 0.09
458 1 0.00
464 1 0.00
467 89 0.23
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (459 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATACTAGGCTCGAGCATG
TGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCTGACGCAGAGAACCTGACTGACGGCATAG
GGGTTCCGACGATCGGGGGTGCCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACT
TGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACATCTACCAAGTTTGGGGCCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGC
TCGT
Found at i:20279380 original size:26 final size:26
Alignment explanation
Indices: 20279344--20279396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20279334 GTTGACTTAG
*
20279344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20279370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20279396 G
1 G
20279397 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20281145 original size:26 final size:26
Alignment explanation
Indices: 20281109--20281161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20281099 GTTGACTTAG
*
20281109 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20281135 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20281161 G
1 G
20281162 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Done.