Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 113 of 117
Found at i:20284023 original size:12 final size:12
Alignment explanation
Indices: 20284006--20284036 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
20283996 GTGCTAGTAC
20284006 TTGGCCCTTATA
1 TTGGCCCTTATA
20284018 TTGGCCCTTATA
1 TTGGCCCTTATA
20284030 TTGGCCC
1 TTGGCCC
20284037 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:20284711 original size:26 final size:26
Alignment explanation
Indices: 20284681--20284730 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20284671 TACTTAGGCA
20284681 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
20284707 TACGGAGTTCTTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20284731 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:20285612 original size:26 final size:26
Alignment explanation
Indices: 20285576--20285628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20285566 GTTGACTTAG
*
20285576 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20285602 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20285628 G
1 G
20285629 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20285871 original size:898 final size:897
Alignment explanation
Indices: 20282013--20286867 Score: 6369
Period size: 898 Copynumber: 5.4 Consensus size: 897
20282003 AGGCATACAA
* * * * * *
20282013 AGTTTATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGAACATTCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** *
20282078 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTC-GAACATTGCCGGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * * *
20282142 GACGGCCTTGGGGTTCCGACGATCAAGGGGGCCGGGGGGTGTGAGCACATGATATGTGATGGGTG
131 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20282207 CTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA-CCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
20282271 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* ** **
20282336 TTTATCAAATGGTCACAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTCAGCATGCC
325 TTTTTCAAATGGTCAC-AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
20282401 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
389 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
20282466 AAATCTCGAACAATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
454 AAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
20282531 ACTTCACGAGATGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
20282596 CAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCATCCCGT
584 CAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
20282661 CTCTCTAGCCGACGTAGT-GCTCGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTTTA-GC
649 CTCTCTGGCCGACGTAGTGGC-CGCCCGCCCGCCCA----CTCGTTTCGTCGGTTGGC-TTAGGC
* * ** * ** * * * * *
20282724 ATACGGAGCTCATTCATAGTCTAAGATCGGACCAAACCGAGGGTTGCAGTAGCAAGACCGACAGC
708 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGC
* * * *
20282789 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGTCTGTGCGCCC
773 ACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
20282854 GCCCGCTCGTTTCGTGGGTTGACTTGGGCAAACGAAGTTCATTCCCAATCTAAGCATACGA
837 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * ***
20282915 AGTTCATACCTAGTCTAAGATCGGATCGGACCGGACCGAGGGTTGCGATGGCACATGCTGGGCTC
1 AGTTCATTCCCAGTCT-A-A---GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
20282980 GGGCATATGCTGGTGCCGTATTTTTCTTCGCCTGGGTACCA---T-----CATCA---GAGAACC
61 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * *
20283034 TGACCGGCGGCATTGCGGTTCCTACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
126 TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
*
20283099 TGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
189 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
20283164 CCCTTAAA-AGC-TTTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
254 CCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
20283227 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATG
318 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* *
20283292 CATGCCAAAAAAAATAAAAGGATCACGTCCACCAA----GGGGCCAAAACTCCTTCCGAAAAAAT
383 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
20283353 TTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGTCGTCTTGC
448 TTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
20283418 CATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
20283483 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
578 GGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
20283548 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCACTCGTTTCATCGGTTGGTTTAGGC
643 TCCCGTCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
** * * * * *
20283613 ATACAGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAAGGTTGTGGCAGGAGGATCGGTAGC
708 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGC
* * * *
20283678 ACGCAGAGGGGGACCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGTGCCT
773 ACGCAGAGGGGGACCCGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * * * *
20283743 GCACACTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGCCAAACCGTATGG
837 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * *
20283804 AGTTCATTCCCAGTCTAAGATCGAAGTGGACCGAGGATTGCAGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * * * *
20283869 TGTGTTGGTGTTGCATTTTTCTTCG-CTAGGGCAACATCGTCAGAGCATCATCAGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * *
20283933 CGGCGGCATTGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
130 CGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-GG-
* * *
20283998 GCTAGTACTTGGCCCTTATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAA
192 G-T-G--C-TGG----TA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
20284063 TCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTA
247 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
20284128 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
312 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTT
** *
20284193 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCTG
376 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
20284258 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
441 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* *
20284323 GTCTTGCCATAAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAA
506 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
20284388 TGGCATTGGCACGTTGAAATATGAAGATGTGCCTAAAC-CAACCTACCAACCTATGGATCCATGG
571 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACAC-ACCTACCACCCTATCGATCCACGG
* * * * * * * *
20284452 CTTGTGTATCCTGTCTCTCTGGCCGTCGTAGT----GCCCGCTCG-CCAGGTCGTTTCGTCAGTC
635 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCA-CTCGTTTCGTCGGTT
* ** * * * * ** * *
20284512 GACTTATTCATATGGAGTTCATTCCTAGTCTATGGT-TGAACTAGACCGAGTGTTGCGGCAGTAG
699 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAG
* * ** * * *
20284576 GATCGATAGCACGCAGTGGGGGACTCGATCGATCCCTGGCTTGCGCATCCCGCCCATCCGACCGG
763 GATCGATAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
20284641 CTGAGCGCCCGTACGGTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
827 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
20284706 TTACGG
892 ATACGG
* * * *
20284712 AGTTCTTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
20284777 TGTGCTGGTG-TGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* *
20284841 GACGGCATTGGGGTTCCCG-CGATCGGGGGAGCCGGGGGGTGTTCGCACGTGATGTGCGATGGGT
131 GACGGCATTGGGGTT-CCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20284905 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
20284970 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCAAAATGGGGACA
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACA
* * *
20285034 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATATTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
20285099 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAA
388 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** *
20285164 AAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
453 AAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
20285229 AACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
20285294 GCAAAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAACCCG
583 GCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
20285359 TCTCTCTGGCCGGCGTAGTGGCCGCCCGCCTGCCCACTCGTTTGGTCGATTGGCTTAGGCATATG
648 TCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATG
* * * *
20285424 GAATTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATAGCAGGCA
713 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * *
20285489 GAAGGGGACCCGGCTGATCCTCGGCTTACGCATCCCACCCCTCTGGTCGGTTGAGCGCCCGCACG
778 GAGGGGGACCCGGCCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
20285554 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGG
842 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
20285610 AGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
20285675 TTTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * *
20285740 GGCTGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGTGTGCACACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20285804 GTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
20285869 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
20285934 TTTTTCAATTGGTCACAAAATCTTGTACACTT-AACGTTTTTAGCTGATTTTTTTTGTGCATGCC
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAA-GTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20285998 AACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
389 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
20286063 AAATCTCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
454 AAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
20286128 ACTTCATGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAAG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * * *
20286193 TAAAAATATGAAGATGTGCCTAAACAGACCTACCACCCTATCGATCCACAGCTTGCGCTTCCCAT
584 CAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
20286258 CTCTTTGGCCGACTTAGTGGCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGG
649 CTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGG
* * *
20286323 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAG
714 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAG
* * * * ** * * * *
20286388 AAGGAGACCCGGCCGATCCTTGACTTATGCGTCCTGCGCCTCTGGCCGGCTGAACGCCCGCACGC
779 AGGGGGACCCGGCCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
20286453 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGA
843 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * **
20286508 AGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCCAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20286573 TGTGCTAGTTGCAGCATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCACCAGAGCATCGTCG
66 TGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT--------CA-C--CG
* * * *
20286638 GAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGTGGGGCC-GGGGGTGTACGCACATAAT
119 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGAT
* * * *
20286702 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCGCTTATCCCTCATCAAATCTCGAGAACT
183 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
20286767 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGA
248 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
20286832 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
20286868 AAAAAATCCC
Statistics
Matches: 3484, Mismatches: 394, Indels: 142
0.87 0.10 0.04
Matches are distributed among these distances:
883 1 0.00
884 65 0.02
887 2 0.00
888 7 0.00
889 183 0.05
892 5 0.00
893 243 0.07
894 294 0.08
895 208 0.06
896 3 0.00
897 113 0.03
898 1134 0.33
899 125 0.04
900 12 0.00
901 4 0.00
902 13 0.00
903 2 0.00
904 3 0.00
905 3 0.00
906 63 0.02
907 270 0.08
908 293 0.08
909 2 0.00
910 212 0.06
911 1 0.00
912 223 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAG
GGGGACCCGGCCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:20286504 original size:26 final size:26
Alignment explanation
Indices: 20286474--20286526 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20286464 GTTGACTTAG
*
20286474 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20286500 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20286526 G
1 G
20286527 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20287318 original size:26 final size:26
Alignment explanation
Indices: 20287282--20287334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20287272 GTTGACTTAG
*
20287282 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20287308 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20287334 G
1 G
20287335 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20288213 original size:26 final size:26
Alignment explanation
Indices: 20288184--20288234 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20288174 GTTGACTTAG
*
20288184 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20288210 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
20288235 GATCAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20290532 original size:897 final size:895
Alignment explanation
Indices: 20286860--20291747 Score: 6232
Period size: 898 Copynumber: 5.5 Consensus size: 895
20286850 AAATGGTCAC
* * ** *
20286860 AAAATCTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
20286925 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAAAG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
20286990 GCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCAACGGCTT
131 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20287055 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCGGCCCGCCTGCCCGCTCGTTTCGTC-GATTGGC
196 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAG-TTGGC
* ** * * *
20287119 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATT
260 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATC
* * * * * * * * * *
20287184 GGCAGCACACAGAAGGTGACCAGGTCGATTCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTCA
325 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
20287249 GTGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAC
390 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATAC
* * * * ** * * * *
20287314 GGAGTTCATTCCCAGTCTAAGATCGAACCAGTCTGAGGGTTCCGACAGCACATGTTGGGCTCAGG
454 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
20287379 CATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGA
519 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
20287444 CCGACGCCATTGGGGTTCCGACGATCGAGGGGGCCGGGAGGGTTTGCGCACAAGATGTGCGATGG
584 CCGACGGCATTGGGGTTCCG-CGATCG-GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGG
* * *
20287509 GTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGGACT--CATCCCC
646 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
20287572 TTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTTAAATGGGGAC
711 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
20287637 ACTTCTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTGTGCATG
776 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TTTTTGTGCATG
* * *
20287702 CCAAAAAAAATAAAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAA
840 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
20287758 AAAATTTTAAAAAATCCTGAACCATAAAAAG-TTTGAAAAATCATGAAAAATAGAAAACGAGTCA
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACGAGTCG
*
20287822 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20287887 GGCATTGGCAAACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCT
130 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
20287952 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTTGTCAGT
195 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCAGT
* * **
20288017 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGACCAAGGGTTGCGATAGCAG
256 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAG
* * * *
20288082 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGG
321 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
* * *
20288147 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAATCTAAGC
386 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGC
* ** ** * *
20288212 ATACGGAGTTCATTCCCAGTCT-AGATCAAATTGGACCAAGGGTTGCGACAGCACATGCTGGGTT
450 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
20288276 CAGGCATGTGCTGGTGCCGCAGTTTTCTTCACCGAGG---CA-C-T------ATCGCCGGAGATC
515 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * * *
20288330 CTGACCGGCGACATTGGAGTTCCGGCGATCCGAGGGGGCCGGGGGGTGTTCGCACAAGATGTGCA
580 CTGACCGACGGCATTGGGGTTCC-GCGAT-CG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCG
** ** *
20288395 ATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCTGTCATCGAACCTCGAGAACTCACAC
642 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
**
20288460 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCCATTAAAGTGTCTGAAATGG
707 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
20288525 GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTAAAATTTTTTGT
772 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCT-AAATTTTTTGT
* *
20288589 GCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACACCTTCTGAA
835 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
20288650 AAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
20288715 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
20288780 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGACTT
131 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
20288845 ACGCATCCCG--TCTCT------C----T----G---GCCCGCCCGCTCGTTTCGTCAGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
* * * * * * *
20288891 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCA
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCG
* ** * * * * * ** *
20288956 ACAGTGCACAGAGGGGGACCCGATCGATCCCCGACTTGCACATCCTGCCCCTCTGGCTAGTTGAG
326 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
20289021 TGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCGTACGGAGTTCATTCCCAGTCCTAGCATACA
391 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAGCATACA
* *
20289086 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGC
455 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * *
20289151 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGTCGGAGCATCGCCAGAGAACCTAAC
520 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * *
20289216 CGACGGCATTGGGGTTTCGGTGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGT
585 CGACGGCATTGGGG-TTCCGCGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20289281 GCTGGTACTTGGCCCTTATATTGGCCCCATAT-CCTCATCAAACCTGGAGAACTCACACCCCCTT
648 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
20289345 AAAGAGCATTGGAGATTTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTCTTACACGGGGACAC
713 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20289410 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG-TCAAATTTTTTTTTGCATGC
778 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAA-TTTTTTGTGCATGC
* * * * ***
20289474 CAACAAAAATACAAGAATCATGTCTACCAAGGTTATAGCCAAAACTCCTTCTGAA
841 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
20289529 AAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
20289594 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
20289659 GTATTGGCACACAGAAATACGAAGATGTGCCTAATCCCACCTACCACCCTATCAATCCACGGGTT
131 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * *
20289724 GCGCATCCCGTCTCTCAAGCCGACGTAGTGCCCGCCCGTCCGTCTGCTCGTTTCGTCAGTTGGCT
196 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
* * * * * * *
20289789 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACAAAGGGTTGCAGCAGTAAGATCG
261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCG
* * * * * * *
20289854 ACAGCATGCAGAAGGGGACCCGATCGATCCCCGTCTCACGCATCCCGCCGCTCTGGTCGGCTGAG
326 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* *
20289919 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCTAGCATATA
391 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAGCATACA
* *
20289984 GAGTTCGTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGTACATGCTGGGCTCGGGC
455 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
20290049 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTAAC
520 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
** *
20290114 CGGTGGCATTGGGGTTCCTGTGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTG
585 CGACGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
20290178 CTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
649 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
20290243 AAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
714 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20290308 TTTTTCAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTAAATTTATTTGTGCATGCCA
779 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT-TTTGTGCATGCCA
20290373 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
843 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
20290426 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
20290491 CTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20290556 GCATTGGCATGA-AAAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGCCT
131 GCATTGGCA-CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * *
20290620 CACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGT
195 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCAGT
* * * ** * *
20290685 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAAACTGAGGGTTGCGGTAGTAG
256 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAG
* * * *
20290750 GATCGGCAGCACGCAGAGGGGGACCCGATTGATCTCCAGCTTACGCATCCCGCCCCTCTAGCCGG
321 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
* * *
20290815 CTGAGCGCCTGCACGCTCATTT--T--G-TG-----GG--T--TGA---C-TT---AG--T--CA
386 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCA
* *
20290855 TACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
451 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* *** * *
20290920 GGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGGACCATC-CAGGAGAACC
516 GGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
*
20290984 TGACCGACGGCATTGGGGTT-CGACGATCGGGGGGGCC-GAGGGTGTGCGCACATGATGTGCGAT
581 TGACCGACGGCATTGGGGTTCCG-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
20291047 -GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAAATCACA-CC
644 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* ** * * * ** * *
20291110 CCTTAAAAAGTGTTTGGGATTCTATAGGTTTATTACCAGTAGCCATTAAAGTGTTTGAAATGGGG
709 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
20291175 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGC-AGAATGTTTTTGTGC
774 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTA-AAT-TTTTTGTGC
* * * ** * *
20291239 ATGCCAACAAAAATACAAGCATTACGTCTAATAAGTTTGGGCCCAAAAATCCTTCTGAA
837 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* ** * * *
20291298 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
1 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
20291363 CTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
20291428 ACATTGGCACCGCAAAAATATGAAGATGTGCCTAAACCCGCCTACCACACTATCGATCCACGACT
131 GCATTGGCA-CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
20291493 TGAGCATCCCGTCTCTC-AGCCGACGTAGTGCCCGCCCGCCCACCTGCCAGGTCGTTTCATCGGT
195 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCAGT
* ** * * ** * *
20291557 CGGCTTATTCATATGGAGTTCATTCCCAGTCTAAAATCGGATTGGATCAAGCGTTG-GGCAGCAG
256 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAG
* * * * * * *
20291621 GATCGGTAGCACGCAGTGGGGGACCCGGTCGATCCCCGGCTCATGCATCCTGCTCCTCTGGCCGG
321 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
20291686 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
386 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20291748 AGATCCGACC
Statistics
Matches: 3481, Mismatches: 419, Indels: 183
0.85 0.10 0.04
Matches are distributed among these distances:
869 207 0.06
870 70 0.02
871 83 0.02
872 373 0.11
873 129 0.04
874 57 0.02
875 113 0.03
876 2 0.00
877 1 0.00
878 4 0.00
879 379 0.11
880 63 0.02
881 36 0.01
882 3 0.00
883 3 0.00
884 2 0.00
885 2 0.00
887 3 0.00
888 1 0.00
889 3 0.00
890 111 0.03
891 18 0.01
892 361 0.10
893 8 0.00
894 1 0.00
895 1 0.00
896 66 0.02
897 408 0.12
898 543 0.16
899 1 0.00
901 211 0.06
902 217 0.06
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (895 bp):
AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATACAG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GACGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
Found at i:20291935 original size:26 final size:26
Alignment explanation
Indices: 20291899--20291949 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20291889 TTCACTTAGG
20291899 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
* *
20291925 CATACGGAGTTCATTTCCTGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20291950 GATTAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:20292823 original size:26 final size:26
Alignment explanation
Indices: 20292793--20292845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20292783 GTTGACTTAG
20292793 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20292819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20292845 G
1 G
20292846 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20294574 original size:903 final size:895
Alignment explanation
Indices: 20291840--20296388 Score: 5529
Period size: 903 Copynumber: 5.1 Consensus size: 895
20291830 CATCGTCGGA
* * ** ** * * *
20291840 GCATCTCGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTCATTTTGTGGGTTCACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGAGTTGACTTAGGCATACA
* * * ** *
20291905 GAGTTCATTCCCAGTCTAACCATACGGAGTTCATTTCCTGTCTAAGATTAGATCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGT
* ** * * *
20291970 TGC-GATAGCACAACCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCAT
131 TGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAC
** * * * * * *
20292034 CGTCGGAGCATCGCCGGAGAACCTGACCGGCGACGTTGGGGTTCCGACGATCGGGGGGACTGCGG
195 CACCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGG
* *
20292099 GGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCA
259 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
20292164 CCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAG
324 CCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
20292229 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATATTGTACGCTTCGAGT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * **
20292294 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACAAAGTTT-GTTC
454 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
20292358 CAAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAGA
519 C-AAAACTCC-TTCCAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTTAAAAATCGTGAAA
* * *
20292423 AATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGCGAAGGCTTAAGGGACCATTGTATGATTT
581 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
20292488 TACAAGCCATAAAAATGGCATTGGCATGTATAAATATGAAGATGTGCCTAAACCCACCTATCACC
646 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
20292553 CTATCGATCCATGACTTGCGCGTCCCGTCTCTCCGACCGGCATAGTGCCCG--CCCG-CT---TG
711 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCTCCCT-
* *
20292612 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAG
775 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * * * ** * *
20292677 GGTGGCGGCAACAGGATCGGCAGCACACAGAGGGTGACCCAG-TCAATCCCCGGCTTGC
840 GGTTGCAGCAGCAGGATCGACAGCACGTAGAGGG-GACCCAGCT-GAT-CCCTGCTTGC
* * * *
20292735 GCATCCCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCAT-AGGTTGACTTAGGCATAC
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGA-GTTGACTTAGGCATAC
*
20292799 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
65 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGG
* * * * *
20292864 TTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCTGGGCACCAT
130 TTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAC
* * * *
20292929 CGCCGGAGCATCGCTAGAGAACCTGACCGACGGTATTGGGGTTCCG-TCGATCGGGGGGGCCGGG
195 CACCGGAGCATCGC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGAT-GATCGGGGGGGCCGGG
*
20292993 CAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
258 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
20293058 CATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
322 CACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
20293123 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
387 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* ** * *
20293188 GTTTTTGGCTGAATTTTTTTGTGCATGCCAACTAAAATACAAGGATCATGTCTACCGAGTTTGGG
452 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * * *
20293253 GCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACTGAACCGTAAAAAGTTTTGAAAATCGTGAAA
517 GCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTAAAAATCGTGAAA
* *
20293318 AATAGAAAACGAGTCGTCTTGCCATGAAGCTTTA-GTGAAGGCTTAAGGGACCATTGTATGAATT
581 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* **
20293382 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCATATACCACC
646 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
20293447 CTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCAGCT
711 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGTC-TCC
*
20293512 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CT
773 CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-
* * * * * *
20293576 GAGGGCTACAGTAGTCA-GATCGGCAGCACATAGAGGGGGACCCAGCCGATCCCTGGCTTGC
837 GAGGGTTGCAGCAG-CAGGATCGACAGCACGTAGA-GGGGACCCAGCTGATCCCT-GCTTGC
* * * * * * * *
20293637 CCATCCCGCCCCTCTGGCCGGCTGCGCGCCCGCACGCTCATTTCGTCAGTTTACTTAGGCGTATA
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGAGTTGACTTAGGCATACA
* *
20293702 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGATCAGACTGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGT
* * * * * **
20293767 TACAGCACCACATACTTGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAAGGCACCACC
131 TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCACC
** * *
20293832 ACCGGAGCATCGTCGGAGAACCTGACCAACAGCATTGTGGTTCCGATGATCGGGGGGGCCGGGGG
196 ACCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG
* * * * *
20293897 GTGTGCGCGCGTGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCTTATGCCTCAC
260 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAC
* * *
20293962 CAAATCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGC
325 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
20294027 CTTTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTC
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
20294092 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCC
455 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
20294157 AAAACCCCTTCCGAAAAAATTTTAAAAAATCACAAACCACAAAAAGTTTTGAAAATCGTGAAAAA
520 AAAACTCCTTCC-AAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAA
* *
20294222 TAGAAAACGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
20294287 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
20294352 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGTCCACCCGTCCTCCCT
713 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGT-CTCCCT
* * * *
20294417 CTCGTTTCGTCGGTTGGCTTAGGCACACTGAGTTCATTCCCATTCTAAGATCAAACCGGATCGAG
775 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * *
20294482 GGTTGCAGCAGCAGGATCGATAGCACGTAGTTGGGGACCCGGCTGATCCTCTGCTTGC
840 GGTTGCAGCAGCAGGATCGACAGCACGTAG-AGGGGACCCAGCTGATCC-CTGCTTGC
* * * * ** * * **
20294540 GTATCACGCCCCTCTCGCCGGCTGAGCACCCGCACACTTGTTTCATGGGTTGACTTAAGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGAGTTGACTTAGGCATACA
* * *
20294605 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGT
* * * *
20294670 TGC-GATAGCGCATGCTGGGCTGGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCAT
131 TGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA-
* * * *
20294734 CGA-CGGAGCATCGTCGGAGAACCTAACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
194 CCACCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGG
* * * * **
20294798 TGGTGTACGCGCGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCATTATCCCTC
258 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
20294863 ACCAAATCTTGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
323 ACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
20294928 GCCTTTAAAGTGTCCGAAATGGGGACACCTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
**
20294993 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGATG
453 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
20295058 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
518 CCAAAACTCCTTCC-AAAAAATTTTAAAAAA-TCCGAACCGCAAAAAGTTTTAAAAATCGTGAAA
* * * *
20295123 AATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCGTTGTATGAATT
581 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
20295188 TACAAGCCACAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
646 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
20295253 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCTGTCTGCT
711 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CC-GTCT-CC
* * * * ** *
20295318 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCCAAGATCGGATAGGATTG
773 CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
* * * ** * *
20295383 AAGGTTGC-GATAGTAGGATC-AGCAGCGTGTAGAGTGGGA--CAGGGTCGATCCCTGGCTTGT
838 AGGGTTGCAG-CAGCAGGATCGA-CAGCACGTAGAG-GGGACCCA-GCT-GATCCCT-GCTTGC
* * * * * * * * * *
20295443 GAATCCCGCCACTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGTGTTAACTTCGACATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGAGTTGACTTAGGCATACA
20295508 GAGTTCATTCCCAGTCTAAG-ATA--G-G---------A--C------CGGATC--A--GA-GGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGT
* * * * * **
20295547 TGCGGTAGCACAAGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG------C
131 TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCACC
* * *
20295606 ACC--ATCA-C-CGGAGAACCTGACTGGCGGCATTGGGG-TCCGGTGATCGGGGGGG--GGGGGG
196 ACCGGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGG
* * *
20295664 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCGCTATCCCTCATC
261 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACC
* *
20295729 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCA
326 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
20295794 ATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAAAGGTCACAAAATCTTGTACACTTCGAGTTT
391 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * ***
20295859 TTAGCTGAATTTTTTTATGCTTGCCGAAAAAAATACAAGGATCACATCTTCCAAGTTTGGGTTGA
456 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
20295924 AAACTCTTTCCAGAGAGATTTTAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCATGAAAAAT
521 AAACTCCTTCCA-AAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAAT
* *
20295989 AG-AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
20296053 AAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTTCCTGAACCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * ** **
20296118 TCGATCCACGGCTTGCACATCCCGTCTCTCAAGCCTACGTAGTGCCCG--CCCGTCTACCCGTTC
714 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCT-CCC--T-
* * * * *
20296181 GCTCATTTCGTCGATTGGCTGAGG-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
775 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
* * * * * * * * ** *
20296245 GGGTTACGGCAGCAGGGTTGATAGCACGCAGAGGGGGACCCAACCGATCCCCAACTTAC
839 GGGTTGCAGCAGCAGGATCGACAGCACGTAGA-GGGGACCCAGCTGAT-CCCTGCTTGC
*
20296304 GCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATCGA-TTGACTTAGGCATAC
1 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCAT-GAGTTGACTTAGGCATAC
*
20296368 -GAAGTTTATTCCCAGTCTAAG
65 AG-AGTTCATTCCCAGTCTAAG
20296389 ATCGCACCGA
Statistics
Matches: 3200, Mismatches: 395, Indels: 152
0.85 0.11 0.04
Matches are distributed among these distances:
858 6 0.00
859 2 0.00
860 2 0.00
861 130 0.04
862 188 0.06
863 295 0.09
865 15 0.00
866 26 0.01
868 1 0.00
869 3 0.00
870 1 0.00
871 1 0.00
877 51 0.02
878 3 0.00
880 1 0.00
882 5 0.00
888 1 0.00
890 1 0.00
894 133 0.04
895 274 0.09
896 261 0.08
897 3 0.00
898 4 0.00
899 2 0.00
900 1 0.00
901 274 0.09
902 400 0.12
903 1108 0.35
904 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGAGTTGACTTAGGCATACA
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGT
TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCACC
ACCGGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCTCCCTCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC
AGCAGCAGGATCGACAGCACGTAGAGGGGACCCAGCTGATCCCTGCTTGC
Found at i:20294625 original size:26 final size:26
Alignment explanation
Indices: 20294595--20294650 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20294585 TGGGTTGACT
* *
20294595 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20294621 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20294647 TAAG
1 TAAG
20294651 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:20297742 original size:26 final size:26
Alignment explanation
Indices: 20297712--20297764 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20297702 GTTGACTTAG
*
20297712 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20297738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20297764 G
1 G
20297765 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20299296 original size:26 final size:26
Alignment explanation
Indices: 20299266--20299317 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20299256 TTAACGTGGC
20299266 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
20299292 CATACGGAGTTCATTCCGAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20299318 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20300197 original size:26 final size:26
Alignment explanation
Indices: 20300161--20300213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20300151 GTTGACTTAG
*
20300161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20300187 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20300213 G
1 G
20300214 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20301100 original size:26 final size:26
Alignment explanation
Indices: 20301064--20301113 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20301054 GTTGACTTAG
20301064 GCATACGAAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
20301090 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
20301114 AAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:20302002 original size:26 final size:26
Alignment explanation
Indices: 20301966--20302018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20301956 GTTGACTTAG
*
20301966 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
20301992 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20302018 G
1 G
20302019 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20302899 original size:26 final size:26
Alignment explanation
Indices: 20302870--20302922 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20302860 GTTGACTTAG
20302870 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20302896 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20302922 G
1 G
20302923 ATCCCGAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20303376 original size:26 final size:26
Alignment explanation
Indices: 20303337--20303389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303327 GTTGACGTAG
20303337 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
20303363 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
20303389 G
1 G
20303390 ATCAAACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:20304261 original size:26 final size:26
Alignment explanation
Indices: 20304232--20304284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20304222 GTTGACGTAG
20304232 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
20304258 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20304284 G
1 G
20304285 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20305170 original size:26 final size:26
Alignment explanation
Indices: 20305130--20305185 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20305120 TGGGTTGACT
20305130 TAAGCATACGAAGTTCA-TTCCTAGTC
1 TAAGCATACGAAGTTCATTTCC-AGTC
*
20305156 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGAAGTTCATTTCCAGTC
20305182 TAAG
1 TAAG
20305186 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTTCCAGTC
Found at i:20305554 original size:902 final size:898
Alignment explanation
Indices: 20302935--20307555 Score: 6289
Period size: 904 Copynumber: 5.1 Consensus size: 898
20302925 CCCGAACAGC
* * * *
20302935 AAAAAGTGTCAAAAATCGCGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCATGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20303000 CTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
20303065 TGTGCCTAAACTCACTTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTATGGTCGGTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTG
* * *
20303130 TAGTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCC
196 TAGTGCCCGCCCGCC-G-CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
** * ** *
20303195 TAGTCTAAGATTAGACCGAACCGAGGGTTGCG-GTAG-AAGGATCGCCAGCATGCAGAGGGGGAC
259 TAGTCTAAGATCGGACCGGACCGAGGGTTGCGAG-AGCAA-GATCGATAGCACGCAGAGGGGGAC
* * * * **
20303258 CCAACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTTGAGCGCCCGCAATCTCGTTTC
322 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCGTTTC
* * * * * *
20303323 GTGGGTTGACGTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTA
386 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
* * * ** * * *
20303388 AGATCAAACCGCACTGAGGGTTGCGATAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGCATT
451 AGATCAGACCGGAC-GAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATT
** * * * *
20303453 TTTCTTCAACAGGGCACCATCACCGGAGCATCACCGAAGAACCTGATC-A-GCGACATTGGGGTT
515 TTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATG-G-CATTGGGGTT
* **
20303516 TCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
578 CCGACGATCGGGGGGG-TTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
20303581 TTATATTGGCCCTCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
642 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
20303646 TTTTACGGGTTTGCTACCAGTAGCCGTTAAATTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
707 TTTTACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
20303711 ACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTGTTTGTGCATACCAAAAAAAATACAAGG
772 ACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * *
20303776 ATCATGTCTCCCAAGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCACGAACCT
837 ATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCT
* ** *
20303839 CAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTTCACGTGAAG
1 -AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
20303903 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** *
20303968 ATGTGCCTAAACCCACCTACCACCCTATCGATCTGCGGCTTGCGCATCACGTCTCTCTGGCCGGT
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
* * * *
20304033 GTAGTGCCCG--C-CCG-C-CC-ACTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCAC
195 GTAGTGCCCGCCCGCCGCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAT
* * ** * * *
20304092 AGTCTAAGATCGGACCGGATCAAGGGTCACCGTAG-G-AGGATCGGTAGCACGTAGAGGGGGACC
260 AGTCTAAGATCGGACCGGACCGAGGGT-TGCG-AGAGCAAGATCGATAGCACGCAGAGGGGGACC
* * * *
20304155 TGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCAT
323 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
*
20304220 GGGTTGACGTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
388 GGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * * * * * *
20304284 GATCGGACTGAACCGAGGGTTGCGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCAC-TTT
452 GATCAGACCGGA-CGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTT
* * * **
20304348 TTCTTCACCGGGGCACCATCGCAGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCCG
516 TTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCG
* *
20304413 ACGATCGAGGGGGTCTGGGGGGTGTGCGCACATGATGTGCCATGGGTGCT-GTACTTGGCCCTTA
581 ACGATCGGGGGGGT-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
20304477 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
645 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
20304542 TACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
710 TACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * * * * *
20304607 AAATCTTGCACAGTTCGAATTTTTGGCTAAATATTTTTGTGCATGCCAACAAAAATACAGGGATC
775 AAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** * *
20304672 TGGTCTACCAAGTTCGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGT
840 ACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-T
* * *
20304733 AAAAAGTTTCAAAAATGGTGAAAGATAGAAAACGAGTTGTCTTG-CATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
20304797 CTTAAGGGACCATTGTATGAACTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * **
20304862 TCTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTG
* *
20304927 TAGTGCCCGCCCGTCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
196 TAGTGCCCGCCCG-CCGC-CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
* **
20304992 TAGTCTAAGATCGGACCGGACCTAGGGTTGCGAGAGCAAGATCGATAGCACATAGAGGGGGACCC
259 TAGTCTAAGATCGGACCGGACCGAGGGTTGCGAGAGCAAGATCGATAGCACGCAGAGGGGGACCC
* * * * * *
20305057 GGCCGATCCCCGGCTTACGCGTCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGTG
324 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * * *
20305122 GGTTGACTTAAGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGA
389 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
*
20305187 TCAGACCGGATCGAAGGTTACGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTT
454 TCAGACCGGA-CGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTT
*
20305252 CTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGAC
518 CTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGAC
* * * *
20305317 TATCGGGGGGGTTGGAGGGGTTTGCGCACACGATGTGCGATGGGTGCTGGTACCTGGCCCTTATA
583 GATCGGGGGGGTTGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
20305382 TGGGCCCCCTATCCCTCAT-AAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTA
647 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
20305446 CAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
712 CAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
20305511 ATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
777 ATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * ** *** *
20305576 GTCTACCAAGTTTGGGGCAAAAATTTTTTTGAAAAAATTTTAAAAAATCCCAAACCTT
842 GTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-T
* * * *
20305634 AAAAAGTTTCAAAAATTGTGAAAAATATAAAACGAGTTGTCTTGCCATGAACCTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** * * *
20305699 CTTAAGGGACCATTGTATGGGTTTACAAGCCATAAAAATGGTATTGGCACGCAAAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
**
20305764 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAAGCATCCCGTCTCTCTGGCCGGTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTG
* * *
20305829 TAGTGCTCGCCCGCCTGCCAGCCTGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCA
196 TAGTGCCCGCCCGCC-GCC-GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
* * * * *
20305894 TAGTCTAAGATCGGACCAGACCTAGGGTTGCGAGAACAAGATTGACAGCACGCAGAGGGGGACCC
259 TAGTCTAAGATCGGACCGGACCGAGGGTTGCGAGAGCAAGATCGATAGCACGCAGAGGGGGACCC
* * *
20305959 GACCGATCCCCGGCTTACGCGTCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATG
324 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* *
20306024 GGTTGACTTAGGCATACGATGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
389 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
20306089 TCAGACCGGATCGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTT
454 TCAGACCGGA-CGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTT
* * * * *
20306154 CTTTGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTTCCGGC
518 CTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGAC
* * *
20306219 TATCGGGGGGGTTGAGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACCTGGCCCTTATA
583 GATCGGGGGGGTTG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* **
20306284 TGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTTCCTTAAAGAGCATTTGAGATTTTA
647 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
20306349 CAGGTTTGCTGCCATAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
712 CAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
20306414 ATCTTGTACACTTCAAGTTTTTAGTTGAAATTTTTTGTGCATGCCAACAAAAATACAGGGATCAC
777 ATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
**
20306479 GTCTACCAAGTTTGGGGCCAAAACT-CTTTAAGAAAAAATTTTAAAAAATCCCGAACCT
842 GTCTACCAAGTTT-GGGCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCCGAACCT
** *
20306537 GAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAG
1 -AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
20306602 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCATGCAGCAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
**
20306667 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGCATCCCGTCTCTCTGGCCGGT
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
** * * * *
20306732 AAAGCGCCCGCCTGGCCACCCGCCTGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTC
195 GTAGTGCCCGCC-CGCC-GCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** * * * * *
20306797 -TCAGTCTAAGATCAAATTGGATCGAGCG-T-CGTAGCAGCAGGATCGATAGCATGCAGAGTGGG
258 AT-AGTCTAAGATCGGACCGGACCGAGGGTTGCG-AG-AGCAAGATCGATAGCACGCAGAGGGGG
* * * * * * *
20306859 ACCTGACCGATCTCTGGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCACCTGCACGCTCATTT
320 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
** * * *
20306924 CATGTTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGGTCATTCCCAGTCT
385 CATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
* * * * *
20306989 AAGATCAGACCGGACCAAGGTTTGCGGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCAT
450 AAGATCAGACCGGACGAAGG-TTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACAT
* * * *** * *
20307054 TTTTCTTTGCCGGGGCACTATCGTCGGAGCATCGTTGGAGAACCTGACCGGTGGCATTGGGTTTC
514 TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTC
* *
20307119 CGTCGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
579 CGACGATCGGGGGGG-TTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
20307184 TATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAAGAGCAATTGAGAT
643 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
20307249 TTTACAAGTTTGCAACGAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
708 TTTACAGGTTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
20307314 CAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
773 CAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
20307379 TCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAATATCCCGGACCGC
838 TCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-T
* * *
20307442 AAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGGGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
20307507 CTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
20307556 GTAGGACTGA
Statistics
Matches: 3318, Mismatches: 356, Indels: 85
0.88 0.09 0.02
Matches are distributed among these distances:
892 4 0.00
893 420 0.13
894 102 0.03
895 130 0.04
896 116 0.03
897 9 0.00
898 1 0.00
899 4 0.00
900 6 0.00
901 337 0.10
902 854 0.26
903 228 0.07
904 1055 0.32
905 52 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTG
TAGTGCCCGCCCGCCGCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCATA
GTCTAAGATCGGACCGGACCGAGGGTTGCGAGAGCAAGATCGATAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTT
CGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGAT
CGGGGGGGTTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTACCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCT
Found at i:20306065 original size:26 final size:26
Alignment explanation
Indices: 20306035--20306087 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20306025 GTTGACTTAG
*
20306035 GCATA-CGATGTTCATTCCTAGTCTAA
1 GCATATCGA-GTTCATTCCCAGTCTAA
*
20306061 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATTCCCAGTCTAA
20306087 G
1 G
20306088 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATCGAGTTCATTCCCAGTCTAA
Found at i:20306969 original size:26 final size:26
Alignment explanation
Indices: 20306939--20306991 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20306929 TTTGACTTAG
* *
20306939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
*
20306965 GCATATAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
20306991 G
1 G
20306992 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:20307701 original size:26 final size:26
Alignment explanation
Indices: 20307671--20307723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20307661 GTTAACTTAG
20307671 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20307697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20307723 G
1 G
20307724 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20308265 original size:720 final size:726
Alignment explanation
Indices: 20306856--20308280 Score: 2099
Period size: 720 Copynumber: 2.0 Consensus size: 726
20306846 CATGCAGAGT
* * * * * *
20306856 GGGACCTGACCGATCTCTGGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCACCTGCACGCTCA
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCACTCTGGCCCGCTGAGCACCCGCACGCTCA
** * * *
20306921 TTTCATGTTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGGTCATTCCCAG
66 TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGGTCATTCCCAG
* * * * *
20306986 TCTAAGATCAGACCGGACCAAGGTTTGCGGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCG
131 TCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAATGCTAGGCTTGGGCATGTGCTGGTGCCG
* * * *
20307051 CATTTTTCTTTGCCGGGGCACTATCGTCGGAGCATCGTTGGAGAACCTGACCGGTGGCATTGGGT
196 CATTTTTCTTTGCCGGGGCAC--TCATC-G-GCA-C--TGAAGAACCTGACCGGCGGCATTGGGG
*
20307116 TTCCGTCGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
254 TTCCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
20307181 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAAGAGCAATTGA
319 CCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGA
*
20307246 GATTTTACAAGTTTGCAACGAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
384 GATTTTACAAGTTTGCAACCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
20307311 TCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
449 TCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
* * ** *
20307376 GGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAATATCCCGGACCG
514 AGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCC
* *
20307441 CAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGGGAAG
579 CAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGGGAAG
*
20307506 GCTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA-GTAGGACTGAGGGT
644 GCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGGACTGAGGGT
20307570 TGCGGCAGCACGCACAGG
709 TGCGGCAGCACGCACAGG
* * * ** *
20307588 GGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCCGCTGAGTGCCCGCACGCTCG
1 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCACTCTGGCCCGCTGAGCACCCGCACGCTCA
* *
20307653 TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG
66 TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGGTCATTCCCAG
* * * *
20307718 TCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAAATGCTGGGCTTGGGCATGTGCTGGTGCCG
131 TCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAATGCTAGGCTTGGGCATGTGCTGGTGCCG
*
20307783 CATTTTTCTTTGCCGGGGCAC-CATC-GC-C-GAAGAACCTGATCGGCGGCATTGGGGTTCCGAC
196 CATTTTTCTTTGCCGGGGCACTCATCGGCACTGAAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *
20307844 GATCGGGGGGGTC-GGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
261 GATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
20307908 TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTA
326 TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTA
* ** * * *
20307973 CAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAA
391 CAAGTTTGCAACCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * **
20308038 ATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTATTAAAATACAAAGATCA
456 ATCTTGTACACTCT-GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAAGATCA
* *
20308102 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCCAAAAA
520 CGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCCAAAAA
** * *
20308167 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
585 GTTTCAAAAATCGTCAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGGGAAGGCTTAA
* * **
20308232 GGGATCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGTAG
650 GGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
20308281 AAATATGAAG
Statistics
Matches: 621, Mismatches: 70, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
719 1 0.00
720 382 0.62
721 44 0.07
724 1 0.00
726 2 0.00
729 3 0.00
732 188 0.30
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (726 bp):
GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCACTCTGGCCCGCTGAGCACCCGCACGCTCA
TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGGTCATTCCCAG
TCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAATGCTAGGCTTGGGCATGTGCTGGTGCCG
CATTTTTCTTTGCCGGGGCACTCATCGGCACTGAAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTA
CAAGTTTGCAACCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTCTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAAGATCAC
GTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCCAAAAAG
TTTCAAAAATCGTCAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGGGAAGGCTTAAG
GGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGGACTGAGGGTTGCGGCA
GCACGCACAGG
Found at i:20310393 original size:26 final size:26
Alignment explanation
Indices: 20310356--20310408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20310346 GTTGACTTAG
20310356 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
20310382 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20310408 G
1 G
20310409 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20310789 original size:899 final size:898
Alignment explanation
Indices: 20307575--20312808 Score: 7341
Period size: 896 Copynumber: 5.8 Consensus size: 898
20307565 AGGGTTGCGG
* * * * * *
20307575 CAGCACGCACAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCCGCTGAGT
1 CAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
20307640 GCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
20307705 AGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAAATGCTGGGCTTGGGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * *
20307770 TGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCA---TC---G---C--CGAAGAACCTGATC
196 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * *
20307824 GGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTTCGCACATGATGTGCGATGGGTG
261 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20307889 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACTCCCCCTTA
325 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
20307954 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACT
390 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
20308019 TTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCT
455 TTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * * *
20308084 ATTAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
520 AGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* **
20308149 AATCCCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
585 AATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* ** *
20308214 CTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGT
650 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
*
20308279 AGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
715 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
20308344 TTTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGA
780 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * *
20308409 GTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATAGCAGGATCGA
845 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGA
* * *
20308463 CAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCC-ACCCTCTGGCCGGCTGAGC
1 CAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
20308527 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGA
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
20308592 AGTTCATTCCCAATCTAAGATTGGATCAGACCAAGGGTTACAGCAGCACATGCCGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* ** ** *
20308657 AGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATAATCAGAGAACCTGACC
196 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
20308722 -AGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGTGGGGTGTGCGCACA-GAATGTGGGATG
261 GA-CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGGTGTGCGCACATG-ATGTGCGATG
* *
20308785 GGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
321 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
20308850 CTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
386 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
20308915 CACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATGTTTTTGTGCAT
451 CACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
20308980 GCCAAGAAAAATACAAGGATAACGTCTACCATGTTTGGGGCCAAAACTCCAT-CAAAAAAATTTT
516 GCCAAGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTT
* * ** * *
20309044 TCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG-AAAGTAGAAAACGAGTCGTCTTGCCA
580 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
*
20309108 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG
645 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
20309173 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
710 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
20309238 CCGTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
775 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
20309303 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATTGG
836 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGA
* * * *
20309366 CAGCACA-CAGAGGGGGACCCGGCCGATCCTCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAG
1 CAGCA-AGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
20309430 CACCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGCAGAGG
65 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
20309495 GAGTTCATTTCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGTAGCACATGCCGGGCTCGGGC
130 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * * *
20309560 AAGTGCTGGTGCCGCATTTTTCTTTCGTCGGGGCACCATCGTCGGAGCGTCGTCAGAGAACCTAA
195 ATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * *
20309625 CCGGCGACATTAGGGTTCCGACGATC----GG--GTGGGGTGTGCGCACATGATGTGCGTTGGGT
259 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20309684 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
20309749 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20309814 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * **
20309879 AAGAAAAATACAAGGATAACGTCTACCATGTTTGGGGCCAAAACTTCATCAAAAAAAAGTTTTTC
519 AAGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTTAA
* * ** *
20309944 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAATAATAGAAAACGAGTTGTCTTGCCATTA
583 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * *
20310009 AACTTCATGTGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAC
648 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * *
20310074 ACAGAAATACGAAGATGT-CCGTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCC
713 GTAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * *
20310138 GTCTCTCTGGCCGGTGTAGTGCCTACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGGATAC
777 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
20310203 GAAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGTAGTAGGATCGA
842 GGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGA-TAGCAGGATCGA
* ** * * * *
20310260 CATCAAGCAGAGGGGGACCCAACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGT
1 CAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
20310325 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
20310390 AGTTCATTCCTAGTCTAAGATCAGACAAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* ** *
20310455 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCACCGGAGCATCGTCGGAGAACCGGACC
196 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * *
20310520 GATGGCATTGGGGTTCCGACTATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
261 GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
20310585 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
326 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
20310650 AGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATAGGGACACTT
391 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
20310715 TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
456 TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
20310780 GAAAAATACAAGGATAACGTCTACCATGTTTGGGGCCAAAACTCCGT-CAAAAAATTTTTTAAAA
521 GAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-ATTTTAAAA
** *
20310844 AATCCCGAACCACAAAAA-TTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAA
585 AATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* * * *
20310908 CTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCACAAGAATGGCATTGGCACAT
650 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* *
20310973 AGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGTC
715 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
20311038 TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGA
780 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
20311103 GTTCATTCCAAGTCTAAGATCAGACCAAATCGAGGGTTGCGATAGTAGGATCGA
845 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGA
* * ** * * * **
20311157 CAGCACGCAGAAGGAAAGCCAGTCC-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTAGCTGAG
1 CAGCAAGCAGAGGGGGA-CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
20311221 CGCCCGCACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
65 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * ** *
20311286 GAGTTCATTCCCAATCTAAGAT-TGACCGGACCGAGGGTCGCAGCAGCACATGCTGGGCTCGGGC
130 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* **
20311350 ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGGT-GGAGAACCTGA
195 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GTCGGAGAACCTGA
* * * * * *
20311414 TCGACAGCATTGGCGTTCTGACAATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
259 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20311479 GCTCGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
20311544 AAAGAGCATTTGAGATTTTACAAGTTTGTTACCAGTAGCCATTAAAGTGTCTGAATTGGGGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
20311609 TTTTTTCAAATGGTCACAGAATCTTGTACATTTCGAGTTTTTAGCTGAATTGTTCTGTGCATGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * * * *
20311674 AACAAAAATTCAAGGATCACGACTACCAAGTTTGAGGCCAAAATTTCTTCCGAAAAAATTTTAAA
519 AAGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
** *
20311739 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
584 AAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
20311804 ACTTCACATGAAGTCTTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
649 ACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
20311869 GCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCATCCCA
713 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * ** *
20311934 TCTTTATGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCACTCGTTTTATCGGTTGGTTTAGGCA
778 TCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
20311999 TATGGAGGTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGCAAGATCGA
839 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGA
* * * ** *
20312059 CAACATGTAGAGCAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCTCGGCTGAG
1 CAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAG
** * *
20312123 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACA
65 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * ** * *
20312188 GAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGTGTTACGATAGCACATGCTAGGCTCGAGC
130 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * *
20312253 ATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCG-CTGGAGAACCTGA
195 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGA
* * * **
20312317 CCGGCGACATTGGGGTTCCGATGATCGGGGGATCGGGGGGTGTGCGCACATGATGTGCGATGGGT
259 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20312382 GCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
20312447 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20312512 -TTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTAAGCTGAATTTTTTTGTGCATGC
454 TTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
20312575 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
518 CAAGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * *
20312640 AAAATCCTGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
583 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * * *
20312705 AACTTCACGTGAAAGCTGAAGGGACCATTGCATGAATTCACAAGCCATAAAAATGGCATTGGCAC
648 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
20312770 TTAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
713 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
20312809 AACCGAGGGT
Statistics
Matches: 3876, Mismatches: 416, Indels: 95
0.88 0.09 0.02
Matches are distributed among these distances:
887 161 0.04
888 43 0.01
890 2 0.00
893 59 0.02
894 264 0.07
895 1 0.00
896 657 0.17
897 502 0.13
898 366 0.09
899 449 0.12
900 290 0.07
901 88 0.02
902 390 0.10
903 389 0.10
904 154 0.04
905 61 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CAGCAAGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
GAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGA
Found at i:20311283 original size:26 final size:26
Alignment explanation
Indices: 20311253--20311305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20311243 GTTGACTTAG
*
20311253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20311279 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20311305 G
1 G
20311306 ATTGACCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20313858 original size:26 final size:26
Alignment explanation
Indices: 20313829--20313881 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20313819 ATTGACTTAG
20313829 GCATACGAAGTTC-ATTCCCAGTATAA
1 GCATACGAAGTTCAATT-CCAGTATAA
* * *
20313855 GCATATGGAGTTCAATTCCAGTCTAA
1 GCATACGAAGTTCAATTCCAGTATAA
20313881 G
1 G
20313882 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATTCCAGTATAA
Found at i:20314778 original size:26 final size:26
Alignment explanation
Indices: 20314747--20314802 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20314737 TGGGTTGACT
*
20314747 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
* *
20314773 TAAGCATACAAAGTTCATTGCCAGTC
1 TAAGCATACAAAGTTCATTCCCAATC
20314799 TAAG
1 TAAG
20314803 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:20316644 original size:159 final size:159
Alignment explanation
Indices: 20316348--20316706 Score: 479
Period size: 159 Copynumber: 2.3 Consensus size: 159
20316338 CCTGCCCGCC
* *
20316348 CGCTCGTTTCGTCGGTTGAGTTAGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCAGACCG
*
20316413 AAGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATC
66 AAGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATC
* *
20316478 TCACCCCTCTGGGC-GGCTGAGCGCACGTA
131 CCACCCCTCT-GGCTGGCTGAGCGCACGCA
* * *
20316507 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCCAAGATCAG-ACCAGACC
* * ** * * * * **
20316571 GAGGGTTGCTACAGCAAGATCGGTAGCATGTAGAGGGGGATCCGATCGATCCCCGGCTTGTGCAT
65 GAAGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACAT
* * *
20316636 CCCGCCCCTCTGGCTGGCTGAGTGCCCGCA
130 CCCACCCCTCTGGCTGGCTGAGCGCACGCA
* *
20316666 CGCTCGTTTCGTGGTTTGACTTAGGCATATGGAGTTCATTC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
20316707 ATAATCTAAG
Statistics
Matches: 175, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
158 4 0.02
159 171 0.98
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCAGACCG
AAGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATC
CCACCCCTCTGGCTGGCTGAGCGCACGCA
Found at i:20316727 original size:26 final size:26
Alignment explanation
Indices: 20316698--20316768 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
20316688 AGGCATATGG
*
20316698 AGTTCATTCATAATCTAAGCATACGA
1 AGTTCATTCACAATCTAAGCATACGA
* *
20316724 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCACAATCTAAGCATACGA
* *
20316750 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCACAATCTAAG
20316769 ATTGGACCGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
AGTTCATTCACAATCTAAGCATACGA
Found at i:20317651 original size:26 final size:26
Alignment explanation
Indices: 20317615--20317667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20317605 GTTGACTTAG
20317615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20317641 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20317667 G
1 G
20317668 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20318569 original size:133 final size:133
Alignment explanation
Indices: 20318325--20318578 Score: 350
Period size: 133 Copynumber: 1.9 Consensus size: 133
20318315 GCCCGCTCGT
* * * *
20318325 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGACTGGATCGGACTGAAG
1 TCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGACTGGACCGAACTCAAG
* **
20318390 GTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGGCGCCCATA
66 GTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGGCGCCCATA
20318455 CGC
131 CGC
* * *
20318458 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGAAC-CAA
1 TCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGACT-GGACCGAACTCAA
* * * *
20318521 GGGTTGCTACAGCAGGATCTATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTG
65 -GGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTG
20318579 TGCATCCCGG
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
132 3 0.03
133 102 0.97
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (133 bp):
TCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGACTGGACCGAACTCAAG
GTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGGCGCCCATA
CGC
Found at i:20318677 original size:26 final size:25
Alignment explanation
Indices: 20318639--20318717 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
20318629 GTTGACTTAG
20318639 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
*
20318665 GGATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
20318691 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
20318717 G
1 G
20318718 ATCGGACTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 46 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20319495 original size:26 final size:24
Alignment explanation
Indices: 20319449--20319531 Score: 105
Period size: 26 Copynumber: 3.3 Consensus size: 24
20319439 TGACTTAGGC
20319449 ATACGGAGTTCATTCCTAGTCTAAAG
1 ATACGGAGTTCATTCC-AGTCT-AAG
*
20319475 ATACGGAGTTTATTGCCAGTCTAAG
1 ATACGGAGTTCATT-CCAGTCTAAG
20319500 CATACGGAGTTCATTCCCAGTCTAAG
1 -ATACGGAGTTCATT-CCAGTCTAAG
20319526 AT-CGGA
1 ATACGGA
20319532 CTGGACCGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 4 0.08
25 5 0.10
26 41 0.79
27 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
ATACGGAGTTCATTCCAGTCTAAG
Found at i:20320030 original size:808 final size:808
Alignment explanation
Indices: 20318474--20320088 Score: 2827
Period size: 808 Copynumber: 2.0 Consensus size: 808
20318464 CATGGGTTGA
20318474 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTACAGCAGGAT
* * * * * *
20318539 CTATAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGGTCCTTTTGGTTGGCT
66 CGATAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTATGCATCCCGGCCCTTCTGGCTGGCT
* *
20318604 GAGTGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGGAT
131 GAGTGCCCGGACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAAGAT
*
20318669 ACGGAGTTCATTGCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
196 ACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
* *
20318734 GGTTGCGGTAGCACATGCTAGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTCATCGAGGCACCA
261 GGTTGCGGTAGCACATGCTAGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCA
* *
20318799 TCGCCGGAGCATCGCCGGAGAACCTGACTAGAGGCATTGGCGTTCCGGCGATCGGGGGGGTCGGA
326 TCGCCGGAGCATCACCGGAGAACCTGACTAGAGGCATTGGCGTTCCGGCGATCGGGGGGGCCGGA
* *
20318864 GAGGGGGTTGTCCGCACATGGCGTGCGATGGGTGCTGGTACTTGGACCTTATATTCGCCCCCTAT
391 GAGGGGGTTGTCCACACATGACGTGCGATGGGTGCTGGTACTTGGACCTTATATTCGCCCCCTAT
* *
20318929 CCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
456 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
*
20318994 CAGTAACCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACT
521 CAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
20319059 TCGAGTTTTTAGTTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
586 CCGAGTTTTTAGTTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
20319124 GGGGCCAAAACTCCTTCCGAAAAAAGATTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
651 GGGGCCAAAACTCCTTCCGAAAAAAGATTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
20319189 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
716 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
20319254 AATTTACAAGACATAAAAATGGCATTGG
781 AATTTACAAGACATAAAAATGGCATTGG
* *
20319282 CTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACCAAGGGTTGCTACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTACAGCAGGAT
*
20319347 CGGTAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTATGCATCCCGGCCCTTCTGGCTGGCT
66 CGATAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTATGCATCCCGGCCCTTCTGGCTGGCT
*
20319412 GAGTGCCCGGATGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAAGAT
131 GAGTGCCCGGACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAAGAT
*
20319477 ACGGAGTTTATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
196 ACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
* * *
20319542 GGTTGTGGTAGCACATGCTGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA
261 GGTTGCGGTAGCACATGCTAGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCA
* * * *
20319607 TCGTCGGAGCATCACCGGAGAACCTGACTGGAGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
326 TCGCCGGAGCATCACCGGAGAACCTGACTAGAGGCATTGGCGTTCCGGCGATCGGGGGGGCCGGA
* *
20319672 GAGGGGGTTGTCCACACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTG-CCCCTAT
391 GAGGGGGTTGTCCACACATGACGTGCGATGGGTGCTGGTACTTGGACCTTATATTCGCCCCCTAT
*
20319736 CCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
456 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
* *
20319801 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
521 CAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
20319866 CCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
586 CCGAGTTTTTAGTTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* **
20319931 TGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCA
650 TGGGGCCAAAACTCCTTCCGAAAAAAGATTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
20319996 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTAT
715 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
20320061 GAATTTACAAGCCATAAAAATGGCATTG
780 GAATTTACAAGACATAAAAATGGCATTG
20320089 CCACATAGAA
Statistics
Matches: 763, Mismatches: 43, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
807 147 0.19
808 616 0.81
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (808 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTACAGCAGGAT
CGATAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTATGCATCCCGGCCCTTCTGGCTGGCT
GAGTGCCCGGACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAAGAT
ACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
GGTTGCGGTAGCACATGCTAGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCA
TCGCCGGAGCATCACCGGAGAACCTGACTAGAGGCATTGGCGTTCCGGCGATCGGGGGGGCCGGA
GAGGGGGTTGTCCACACATGACGTGCGATGGGTGCTGGTACTTGGACCTTATATTCGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
CAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
CCGAGTTTTTAGTTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAAGATTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGACATAAAAATGGCATTGG
Found at i:20321306 original size:26 final size:26
Alignment explanation
Indices: 20321276--20321326 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20321266 TAACTTAGGA
*
20321276 ATACGGCGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
20321302 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20321327 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20321491 original size:900 final size:898
Alignment explanation
Indices: 20319475--20325546 Score: 7736
Period size: 900 Copynumber: 6.8 Consensus size: 898
20319465 TAGTCTAAAG
* * * *
20319475 ATACGGAGTTTATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
* * * *
20319540 AGGGTTGTGGTAGCACATGC-TGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
66 AGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * *
20319604 CCATCGTCGGAGCATCACCGGAGAACCTGACTGGAGGCATTGGGGTTCCGGCGATCGGGGGGGCC
131 CCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * * * *
20319669 GGGGAGGGGGTTGTCCACACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCT
195 --CG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
* *
20319734 ATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
20319799 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
20319864 CTCCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
386 ATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ** *
20319929 TTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAAT
451 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
* *
20319994 CATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
20320059 ATGAATTTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
20320124 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGCAGAGCCCACCCGCCC
646 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* *
20320189 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCGGA
711 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* ** ** * ** *
20320254 CCGAGGGTTACGATAGTAGGATCGATAGCACACAGAGGGGAACCCGATTGATC-CTCGGCTTACG
776 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCT-GGCTTGCG
* *
20320318 CATCCTGCCCCTCTGGCCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
840 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
20320377 AAATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TTTCACAGTTTAAGATCGGACCGAACC
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTC-CAGTCTAAGATCGGACCGGACC
* * * * *
20320441 GAGGGTTGCAGCAGCATATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGC
65 GAGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
20320506 ACCATTGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCC-AGCGATCGGGGGGC
130 ACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGA-CGATCGGGGGGC
*
20320570 CCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTA
194 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
* * * *
20320635 TCCCTCATCAATCCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAGAGGATTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
20320700 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCCAATGGTCACAAAATCTTGTACAA
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
* * * ** * *
20320765 TTTGCGTTTTTAGCTGAATTTTTTTGTACATGCCAACAATGATAAAAGGATCACATCTACCAAGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * * *
20320830 TTGTTGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATT
452 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* * * * *
20320895 GTGAAAAATAAAAAACGAGTCGTCTTGCCCTGAAACTTCACGAGAAGGCCTAAGGGACCATTGTA
517 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
20320960 TGAATTTGCAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCTCCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20321025 ACCACCTTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG
647 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
20321090 TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCTGAC
712 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * *
20321155 CGAGGGTTGCAGCAGCAGAATCGGTAGCACACAGAGGGGGACCC-AGTCGATCTCTGGCTTGCGC
777 CGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCTCTGGCTTGCGC
* * * * * * * *
20321219 GTCCCGCCCCT-AGGCTGGCTGAGCGCTCGCATGCTCGTTCCGTGGGTTAACTTAGGA
841 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
20321276 ATACGGCGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
* * *
20321341 AGGGTTGTGGCAGCACATGCTTGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
20321406 CCATCGTCAGAGCATCGCCAGAGAACCTGA-TCGGCTGCATTGGGGTTTCGACGATTGGGGGGCC
131 CCATCGTCGGAGCATCGCCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* **
20321470 CGGTGGGGTTGTGCACACATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 CGG-GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
* *
20321535 TCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGAATTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
20321600 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
*
20321665 TTCGAG------GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
20321724 TTGGGGCC-AAACGTCCTTCCCGAAAAAAGTTTAAAAAA-CTCG-ACCGTAAAAAAAGTTTC-GA
452 TTGGGGCCAAAAC-TCCTT-CTGAAAAAATTTTAAAAAATCCCGAACC--ACAAAAAGTTTCAAA
* **
20321785 AATCATGAAAAATAGAAAACGAGTCGTCTAGCCATTGAAACTTCACGTGAA-GCTTAAAAGACCA
513 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCA
* ***
20321849 -TGTTATTAAATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATAT-AAGATGTGCACTAA
577 TTG-TA-TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC-CTAA
* * * *** * *
20321912 ACCTA-CTACCACCCTATCCAT-CACGACTTGCATGTCCCGTCTCTCTGGTC-GCGGA-TGCCC-
639 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
20321972 ACCGCCCCGCCCACTCATTT-TTGCGGTTGGCTTAGGCATACAGA-TTCATTCCCAGTCTAAGAG
704 CCCG-CCCGCCCGCTCGTTTCGT-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
20322035 CAGACCGGACC-ACGGTAGCAGCAGTAGGATCGGCAGCACATAGAGGGGAACCCGACCGATACTC
767 CAGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CTC
* * * * * *
20322099 -GACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGTGCCCACACGTTCATTTCGTGGGTTGACTTA
831 TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
20322163 GGC
896 GGC
* * *
20322166 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCTAGTCTAAGATCAGAACGGACC
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCC-AGTCTAAGATCGGACCGGACC
* * * * * * * **
20322230 AAGGGTTACGGTAGCACATGCTAGGCTCGAGCATCTGCTGGTGCTGCATTTTTCTTCACCGGGGC
65 GAGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * ***
20322295 ACCATCGCCAGAGCATCGCCAGAGAACCTGACTGGCGATTTTGGGGTTCCGACGATCGGGTGGG-
130 ACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG-GGGC
* * *
20322359 CCGGTGGCGCGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
194 CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
* *
20322424 TCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
** *
20322489 CCAGTAGCCATTAAAACGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
* **
20322553 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATGAAGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * **
20322618 TTGGGGCCAAACCTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
452 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* *
20322683 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
517 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
20322748 TGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* **
20322813 AACACCCTATCGATCCACGGCCAGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCTCG
647 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---CC-CG
* * * * * *
20322878 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCCTTCCCTGTCTAAGATTAGACT
708 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * *
20322943 GG-CTGAGGGTTGCGGCAGTAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTG
773 GGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCTGGCTTG
*
20323007 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGC
838 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * * *
20323068 ATATGAAGTTCATTCCCAGTCTCAGCATACAGAGTTCATTCCCAGTCTAACATTGGACCGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
* * *
20323133 AGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** ** * * *
20323198 CCATCGTCGGAGCATCGCAAGAGCCCCTGACAT-GCGGCATT-GGGTTCTGGCGATCGGGGGGGC
131 CCATCGTCGGAGCATCGCCGGAGAACCTGAC-TGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* *
20323261 CGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATT
195 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* * * * *
20323326 GCTCATAAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
20323391 AGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGATCACAAAATCTTGTATAGTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATT
* * * *
20323456 TGAGTTTTTAGCTGAAATTTTTTGTGCATGCGGAA-AAAAATACAAGGATCACGTCTACCAACTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
20323520 TGGGACCAAAAGTCGTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAATTTTCAAAAATCA
453 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA
** *
20323585 TGAAAAATAGAAAACGAGTCGTCTTGCCATGCGACTTCACGTGAAGGCTTAAGGGGCCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
20323650 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* **
20323715 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGATGTAGT--------GCCCGC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * * * *
20323772 CCGCTCGTTTTGTCGATTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACT
713 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
** ** ** * * * *
20323837 GAGGGTTG-GGTGGTAGGATTAGCAGCATGCAGAGAGGGACTCGACCAATC-CTCGGCTTGTGCA
778 GAGGGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCT-GGCTTGCGCA
* * *
20323900 TCCCGCCCCTCTGGCCGGCTAAGCGCTCGCACGCTCGTTTAGTGGGTTGACTTAGGC
842 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
20323957 ATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
* ** * *
20324022 AGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* ** * * *
20324087 CCATCG-CTGGAGCATCGTCGGAGAACCTGACCAGCGGTATTGGGGTTGC-AGCGATCGGGGGGG
131 CCATCGTC-GGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGA-CGATCGGGGGGC
* * * *
20324150 CCGGGGGCGTGTGCGCACATTATGTGCAATGGGTGCTGGTACTTGGCTCTTATATCGGCCCCTTA
194 CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TA
* * *
20324215 TCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACCGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
20324280 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
* * * * * *
20324345 TTAGAATTTTTAGCTGAATGTTTTTGTGCATGCCAATAAAAATACGAGGATCACGTCTACCAGGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * **
20324410 TTGGGGTGAAAACTCCTT-TCGGAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAAT
452 TTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
* *
20324474 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCGTTGT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
20324539 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAGCCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * *
20324604 TACCACCCTATCGATCCACGACTTACGCAT-CCGTCTCTCTGGCCGGCGCAGTGCCCGCCCACAC
646 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-C
* * * * *
20324668 GTCCTCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAAATCAGAC
707 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
20324733 CGGACCAAGGGTTGCGGCTAGGCAGGGATCTGGCAGCACGCAAAGGGGCGACCC-AGCCAATCTC
772 CGGACCGAGGGTTGCGGC-A-GTA-GGATC-GGCAGCACACAGAGGGG-GACCCGA-CCGATCTC
* * *
20324797 AAT-ACTTGCGCAT-CCGTACCCCTCTGGCCGACTGA-CGCGCCGCACGCTTGTTTCGTGGGTTG
831 --TGGCTTGCGCATCCCG--CCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCGTGGGTTG
*
20324859 ACTCAGGC
891 ACTTAGGC
* * * * *
20324867 ATACGAAGTTCAATT-CCAGTTCTAAGTATACGG-GTGC-TTTCCAATGTCTAAGATCAGTACCA
1 ATACGGAGTTC-ATTCCCAG-TCTAAGCATACGGAGTTCATTTCC-A-GTCTAAGATC-GGACCG
* * * * *
20324929 GACCGAAGGGTTGCGACAGCAACATGC-TGGGTCAGG-ATGTGCTGGTGGTCGCA-TTCTCTTCA
61 GACCG-AGGGTTGCGGCAGC-ACATGCTTGGCTCGGGCATGTGCTGGT-GCCGCATTTTTCTTC-
* * * *
20324991 CTGGGGGCACCATCGTCGGAGGCATCGCCGGAGAACCTGACGGGCGGCATTGGGGTTCCGGCGAT
122 GTCGGGGCACCATCGTCGGA-GCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGAT
*
20325056 CGAGGGGG-CCAGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
186 CG-GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
20325119 GCCCACTATCCCACATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAG
250 GCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
20325184 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAACTGGTCACAAAATC
314 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
20325249 TTGTA-AACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
379 TTGTACAA-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * ** *
20325313 CTACCAAGTCTGGGGCCAAAACTCCTT-TCAAAAAAATTTTAAAAAATCCCCAACCGTAAAATGT
443 CTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGT
* * *
20325377 TTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
507 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
20325442 CACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
572 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
20325507 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
637 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
20325547 GTACCCCTCT
Statistics
Matches: 4485, Mismatches: 575, Indels: 209
0.85 0.11 0.04
Matches are distributed among these distances:
888 45 0.01
889 495 0.11
890 294 0.07
891 461 0.10
892 4 0.00
893 121 0.03
894 259 0.06
895 117 0.03
896 4 0.00
897 5 0.00
898 2 0.00
899 252 0.06
900 858 0.19
901 375 0.08
902 409 0.09
903 93 0.02
905 2 0.00
906 4 0.00
907 14 0.00
908 13 0.00
909 16 0.00
910 60 0.01
911 26 0.01
912 456 0.10
913 43 0.01
914 52 0.01
915 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCTCTGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
Found at i:20322200 original size:26 final size:26
Alignment explanation
Indices: 20322164--20322216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20322154 GTTGACTTAG
20322164 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
20322190 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20322216 G
1 G
20322217 ATCAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20323991 original size:26 final size:26
Alignment explanation
Indices: 20323955--20324007 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20323945 GTTGACTTAG
*
20323955 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20323981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20324007 G
1 G
20324008 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20326895 original size:707 final size:710
Alignment explanation
Indices: 20325013--20327015 Score: 2722
Period size: 722 Copynumber: 2.8 Consensus size: 710
20325003 TCGTCGGAGG
* * * *
20325013 CATCGCCGGAGAACCTGACGGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGT-CG
1 CATCGTCGGAGAACCTGACCGGCGG-ATTGGGGTTTCGACGATCGAGGGGGCCAGGGGGTGTGCG
* * *
20325077 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCACATCAAACCT
65 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
20325142 CGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
20325207 GTGTCTGAAATGGGGACACTTTTTTCAACTGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
20325272 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTCTGGGGCCAAAACAC
* * * * * *
20325337 CTTTCAAAAAAATTTTAAAAAATCCCCAACCGTAAAATGTTTCAAAAATCGTTAAAAATAGAAAA
325 C-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
20325402 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCTA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
20325467 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *** **** *** * *
20325532 CACGGCTTGCGCAT--CGTACCCCTCTGGCCGGCTGAGTGCTCGTAGGCTCGTTTCGTGGGTTGA
519 CACGGCTTGCGCATCCCGT--CTCTCTGGCCGGCT-AGTGCCCGCCCGC-CCACCCGCCCGCTCA
*
20325595 CTTAGCCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCAGAC
580 CTTAG-C-TAC--AG-T-ATTCCCA-TCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGAC
* * **
20325660 AGGACCGAGGGTTACGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
638 AGGACCGAGGGTTACGACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCAC
20325725 CGGGGCAC
703 CGGGGCAC
* ** * * * * * **
20325733 CATCGTCGGAGAACTTGACCGATGACATTGGGG-TTCTAGCGATCGGGGGGGTCGGGGGGCTACG
1 CATCGTCGGAGAACCTGACCGGCG-GATTGGGGTTTCGA-CGATCGAGGGGGCCAGGGGG-TGTG
*
20325797 CGCACATGATGTGCGATGGGTACTGGTACTTGAG-CCTTATATTGGCCCCCTAACCCTCATCAAA
63 CGCACATGATGTGCGATGGGTACTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
20325861 CTTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCTATT
127 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
20325926 TAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
192 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
20325991 GCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACATCTACCAACACTGGGGCCAAAA
257 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTCTGGGGCCAAAA
** *
20326056 TGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGA
322 CACCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
20326121 AAACAAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTTTATGAATTTACAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
20326186 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CTGACCACCCTATC
451 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATC
* * * *
20326250 GATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCACCCACCCGCCCGCTC
515 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAGTGCCCGCCCGCCCACCCGCCCGCTC
* * * * **
20326315 ATTTTG-T-C-G-ATTCGC-T-TAGGCATACGGAGTTCATTCCCAGTTTAA-ATCAGACTA-GAC
579 ACTTAGCTACAGTATTCCCATCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGAC-AGGAC
* * *
20326372 TGAGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
643 CGAGGGTTACGACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
20326437 CAC
708 CAC
* * *
20326440 CATCGTCGGAGAACCTGACCGGCGGATTGGGGTTTCGATGATCAAGGGGGCCACCGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGGCGGATTGGGGTTTCGACGATCGAGGGGGCCA-GGGGGTGTGCG
*
20326505 CACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
20326570 CGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
20326635 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
20326700 GAATTTCTTTT-TGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGTCCAAAAC
260 GAATTT-TTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAACTCTGGGGCCAAAAC
* * *
20326764 ACCTTCCAAAAAGTTTTAAAAAAATCCCGAACCACAAAAACTTTCAAAAATCATGAAAAATAGAA
323 ACCTTCCAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
20326829 AATGAGTCGTCTTACCGTGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
387 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
20326894 CATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGA
452 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
20326959 TCCATGGCTTCCACATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGC
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAGTGCCCGCCCGCCCACCCGC
20327016 TTGTTTCATC
Statistics
Matches: 1128, Mismatches: 137, Indels: 49
0.86 0.10 0.04
Matches are distributed among these distances:
705 1 0.00
706 227 0.20
707 353 0.31
708 28 0.02
709 1 0.00
711 5 0.00
714 1 0.00
717 1 0.00
718 1 0.00
719 2 0.00
720 43 0.04
721 15 0.01
722 445 0.39
723 2 0.00
724 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (710 bp):
CATCGTCGGAGAACCTGACCGGCGGATTGGGGTTTCGACGATCGAGGGGGCCAGGGGGTGTGCGC
ACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTCTGGGGCCAAAACACC
TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGCCCGCCCGCCCACCCGCCCGCTCACTTAGC
TACAGTATTCCCATCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACAGGACCGAGGGTT
ACGACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
Found at i:20327270 original size:26 final size:26
Alignment explanation
Indices: 20327195--20327273 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20327185 GTTGACTTAG
*
20327195 GCATACGGAGTTCATTCCCAGTCGAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20327221 GCATACGGATTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20327247 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20327273 G
1 G
20327274 ATCGGACCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20328150 original size:26 final size:26
Alignment explanation
Indices: 20328114--20328166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20328104 GTTGACTTAG
*
20328114 GCATAAGGAGTTCATTCGCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
* *
20328140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
20328166 G
1 G
20328167 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:20329486 original size:890 final size:887
Alignment explanation
Indices: 20326342--20330045 Score: 4720
Period size: 890 Copynumber: 4.1 Consensus size: 887
20326332 AGGCATACGG
* * *
20326342 AGTTCATTCCCAGTTTAA-ATCAGACTA-GACTGAGGGTTGCGGCAGCACATGTTGGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCAGAC-AGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
20326405 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGCGG-ATTG
65 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTG
* * * * *
20326469 GGGTTTCGATGATCAAGGGGG-CCACCGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACT
130 GGGTTCCGACGATC-AGGGGGTCGA--GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
*
20326533 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCAT
192 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
20326598 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
257 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
20326663 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTTTGCATGCCAAAAAAAAA
322 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGTG-TTGCC-AAAAAAAA
* * * *
20326728 TACAAGGATCACGTCTACCAATTTTGGGTCCAAAACACCTTCC-AAAAAGTTTTAAAAAAATCCC
384 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCC
** * * * * *
20326792 GAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCGTGAAACTTCAC
448 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
20326857 GCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAAT
513 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
20326922 ATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTCCACATCCCGTCTCTCTA
578 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
* * *
20326987 GCCGGCATAGTG-CC-CGCCCGCCCGCCCGCTTGTTTCATCGGTAGGCTTAGCCATACAGAGTTC
643 GCCGGCGTAGTGTCCACGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTC
* * ** * * * * * * * * *
20327050 ATTCCCAGTTTAAGATTGGATCGGATCGAGGATTGCGGCAGTAGGAACAGTAGCATGCAGAGGGG
708 AATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * ** *
20327115 GACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCGT-TGGCCGACTGAGTGCCCGCACGCTCG-
773 GACCCAGTCGATCCCCGGCTTGCGCATCCCACCCC-TCTAGCCGGTTGAGCGCCCGCACGCTCGT
* *
20327178 TTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACGGATTTCATTCCCTGT
837 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-----C-TA---A--GCA--------
20327243 CTAAGCATA
883 -T-A-CA-A
* * **
20327252 TGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGTTAGCACATGCTGGGCTCG
1 ---AGTTCATTCCCAGTCTAAGATCAGACAGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
20327316 GGCATCTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGT-GGAAGCATTGCCGAAGAACC
62 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGG-AG-A--ACC--TG-ACC
* ** * * * * * *
20327380 AGACCGGCGACGTTGCGGTTCCGGTGATCGGGGGAGCCG-GGGGCTGTACGCATATGATGTGTGA
120 AG--CGGC-A--TTGGGGTTCCGACGATCAGGGG-GTCGAGGGG-TGTGCACACATGATGTGCGA
** * * *
20327444 TGGGTATTGGTACTTGGCCCTTATATTAGCCTCCTATCCCTCAGCAAACCTCGAGAACTCACACC
178 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
20327509 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGG
243 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
20327574 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTCA-TTGAATTTTTTTTTC
308 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAA-TTTTTTGTG
*
20327638 TTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
371 TTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** *
20327703 TAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCC
436 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
20327768 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
501 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
20327833 GCATGTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-GGCATGCGTAT
566 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
* * * * *
20327897 CCCGTCTCTCTGGCTGGCGTA------ATGCCCGCCCACCCACTTGTTTCGTCGGTTGGCTTAGG
631 CCCGTCTCTCTGGCCGGCGTAGTGTCCACGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGG
* * * ** * *
20327956 CATACAGGGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGCTTGCGGTAGCAGGATCGGCAG
696 CATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
20328021 CACACAGAGGGGGACCCAGTCCATCCCTGGCTTGCGCATCCTACCCCTATAGCCGGTTGAACGCC
761 CACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAGCGCC
* * * * **
20328086 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCGCAATCTAAGCATACGG
826 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
*
20328148 AGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
20328213 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATTGCCAGAGAACCTGACT
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT---C---G---T--CGGAGAACCTGACC
* * *
20328278 GGCGGCATTGGGGTTCC-AGCGATCGGTGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGG
120 AGCGGCATTGGGGTTCCGA-CGATCAG-GGGGTC-GAGGGGTGTGCACACATGATGTGCGATGGG
* * *
20328342 TGTTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCT
182 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
20328407 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTACAGTGTCTGAAATGGGGATA
247 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
20328472 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGTGCTTGC
312 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTG-TTGC
* * *
20328537 CAAAAAAAATACAAGGACCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
375 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
20328602 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
440 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
20328667 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
505 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
20328732 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
570 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
** *
20328797 TCTCTCTGGCCGATGTAGTGCTCGCACGCCCGCCCTCCCGCTTGTTTCATCGGTTTGG-TTAGGC
635 TCTCTCTGGCCGGCGTAGTG-TC-CACGCCCGCCCGCCCGCTTGTTTCATCGG-TTGGCTTAGGC
* * * * **
20328861 ATACAGAGTTCAATCCCTGTCTAAGATCAGACCAGACCGTGGGTTACGGCAGCGGGATCGGCAAA
697 ATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
20328926 ACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCCCCC
762 ACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAGCGCCC
* *
20328991 GCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACAA
827 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* * * *
20329052 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20329117 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCAGTGGCATTGG
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGG
*
20329182 GGTTCCGACGATC-GGGGGTCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGCACTTGGC
131 GGTTCCGACGATCAGGGGGTCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
20329246 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAGCATTTGA
196 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
20329311 GATTTTATAGGTTTGCTTCCAGTAGCCTTTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
261 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
20329376 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGTGTGCCAAAAAAAATACAA
326 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGT-TGCCAAAAAAAATACAA
* * * * * *
20329441 AGATCACTTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAAATCTCGAACTG
389 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
*
20329506 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG-CGTTGCCATGAAACTTCACGTGAA
454 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAA
*
20329570 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAA
518 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
20329635 GATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCAGG
583 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
20329700 CGTGGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
648 CGTAGTG-TC-CACGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAAT
* ** * * * *
20329765 CCCAGTCTTAGATCAGACCAGACCGAATGTTGCAGCAGCAAGATCGGTAGTACGCAGAGGGGGAC
711 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * *
20329830 CCAGTCGATCCCTGGCTTGCGCATCCCACCCCTCTAGTCGGTTGAGCGCCCGCACGCTCATTTCA
776 CCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCG
* * *
20329895 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAG
841 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* * * ** * * *
20329942 AGTTCATTCCCAATATAAGATCGGACAAAACTGAGGGTTACGACAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
20330007 TGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCG
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG
20330046 CCAGAGCATC
Statistics
Matches: 2456, Mismatches: 275, Indels: 143
0.85 0.10 0.05
Matches are distributed among these distances:
889 6 0.00
890 753 0.31
891 9 0.00
892 1 0.00
893 145 0.06
894 196 0.08
895 243 0.10
896 31 0.01
897 1 0.00
898 5 0.00
899 3 0.00
901 3 0.00
902 1 0.00
903 1 0.00
904 289 0.12
905 5 0.00
908 2 0.00
910 1 0.00
913 22 0.01
914 78 0.03
915 1 0.00
917 3 0.00
918 143 0.06
919 36 0.01
920 4 0.00
922 28 0.01
923 212 0.09
924 17 0.01
925 196 0.08
926 20 0.01
927 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
AGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCAGCGGCATTGG
GGTTCCGACGATCAGGGGGTCGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGTTGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGTCCACGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAATCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGT
CGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
Found at i:20329960 original size:26 final size:26
Alignment explanation
Indices: 20329908--20329960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20329898 GTTGACTTAG
* *
20329908 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATATAA
*
20329934 GCATATAGAGTTCATTCCCAATATAA
1 GCATACAGAGTTCATTCCCAATATAA
20329960 G
1 G
20329961 ATCGGACAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:20330667 original size:26 final size:26
Alignment explanation
Indices: 20330637--20330688 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20330627 GTTGACTTAG
*
20330637 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20330663 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20330689 TATCGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20330785 original size:729 final size:727
Alignment explanation
Indices: 20329387--20331579 Score: 3058
Period size: 729 Copynumber: 3.0 Consensus size: 727
20329377 CACAAAATCT
* * * *
20329387 TGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGTG-TGCCAAAAAAAATACAAAGATCACTTC
1 TGTACACTTCGATTTTTTAGC-AAAATTTTTT-TGTGATGCCAAAAAAAATACGAAGATCACGTC
* ** *
20329451 TACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTT
64 TACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTT
** * * *
20329516 CAAAAATCGTGAAAAATAGAAAATGAGTCG-CGTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
129 TGAAAATCGTGAAAAATAGAAAACGAGTCGTC-TTGCCATAAAACTTCACGTGAAGGCTTAAAGG
* ***
20329580 ACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTA
193 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
* * * * ** * * * *
20329645 AACCTACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCAGGCGTGGTGCTC
258 AACCCACCTACCACACTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGTGTGGAGCCC
* * *
20329710 GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTA
323 GCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAA
* ** * * ** * * * *
20329775 GATCAG-ACCAGACCGAATGTTGCAGCAGCAAGATCGGTAGTACGCAGAGGGGGACCCAGTCGAT
388 GATC-GCACGA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGGTCGAT
* * * * * * * *
20329839 CCCTGGCTTGCGCATCCCACCCCTCTAGTCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
451 CCC-CGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTTGAC
* *
20329904 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAATATAAGATCGGACA
515 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATATAAGATCGAACA
* * * * * *
20329969 AAACTGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTC
580 AGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC
* * *
20330034 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAG
645 GGGGCACCATCGACGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAG
20330099 GGGGCCGGGAGGGTGTGC
710 GGGGCCGGGAGGGTGTGC
* *
20330117 TGTACACTTCGATTTTTTAGCAAAATTTTTTTGTGCATGCCAAAAAAAATACGAGGATAACGTCT
1 TGTACACTTCGATTTTTTAGCAAAATTTTTTTGTG-ATGCCAAAAAAAATACGAAGATCACGTCT
* **
20330182 ATCAAGTTTGGGGCCAAAACACCAACCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTT
65 ACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTT
* *
20330247 GAAAATTGTCAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGAC
130 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGAC
20330312 CATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* *
20330376 CCCACCTACCACGCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGTGTAGAGCCCGC
260 CCCACCTACCACACTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGTGTGGAGCCCGC
* * * *
20330441 CCGCCCACCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGA
325 CCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA
* * *
20330506 TCGCATCGAACTGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGGCCGATCCC
390 TCGCA-CGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGGTCGATCCC
* *
20330571 CAGCTTGCGCATCCCGCCCTTTTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTTGACTTA
454 C-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTTGACTTA
* * *
20330636 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAATATCGAACAAGA
518 GGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATATAAGATCGAACAAGA
*
20330701 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
583 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* * *
20330766 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGG
648 GCACCATCGACGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGG
*
20330831 GTCGGGAGGGTGTGC
713 GCCGGGAGGGTGTGC
*
20330846 TGTACACTTTGATTTTTTAGCAAAATTTTTTTGTGGATGCCAAAAAAAATACGAAGATCACGTCT
1 TGTACACTTCGATTTTTTAGCAAAATTTTTTTGT-GATGCCAAAAAAAATACGAAGATCACGTCT
20330911 ACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTT
65 ACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTT
20330976 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGAC
130 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGAC
20331041 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* * *
20331106 CCCACCTACCACACTATCGATCCACGGCTTATG-A--ATGTCTCTCTGGCCGGCATAAAGCCGGC
260 CCCACCTACCACACTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGG--T---G-TGG-
* * *
20331168 CCGCCCGCCCGCCCGCCCGCCCGCTAGTTTCATCGACTGGCTTAGGCATACGGAGTTCATTCTCA
318 -AGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCTCA
* * *
20331233 GTCTAAGATCACACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAAGGGGACCCGG
382 GTCTAAGATCGCA-CGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGG
* *
20331298 TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCACACGCTCGTTTCGTGGG
446 TCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGG
* * * * *
20331363 TTGACTTAGGCATA-TGCTGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGAT
510 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATATAAGAT
* * * **
20331427 C-AGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
574 CGA-ACAAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * * *
20331491 GTTCGCCGGGGCGCCATC-ACTGGAGCATCGTTGGAGAACCTGACCCACGGCATTGGGGTTCTGA
638 CTTCGCCGGGGCACCATCGAC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
20331555 CAATCGGGGGGGCCGGG-GGTTGTGC
702 CGATCGAGGGGGCCGGGAGGGTGTGC
20331580 GCACATGATG
Statistics
Matches: 1303, Mismatches: 140, Indels: 36
0.88 0.09 0.02
Matches are distributed among these distances:
727 15 0.01
728 5 0.00
729 660 0.51
730 256 0.20
731 1 0.00
732 1 0.00
733 1 0.00
734 11 0.01
735 353 0.27
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (727 bp):
TGTACACTTCGATTTTTTAGCAAAATTTTTTTGTGATGCCAAAAAAAATACGAAGATCACGTCTA
CCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTG
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACACTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGTGTGGAGCCCGCC
CGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGAT
CGCACGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGGTCGATCCCCG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATATAAGATCGAACAAGACCG
AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCA
CCATCGACGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC
GGGAGGGTGTGC
Found at i:20331175 original size:4 final size:4
Alignment explanation
Indices: 20331166--20331191 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
20331156 CATAAAGCCG
20331166 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
20331192 TAGTTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:20331410 original size:26 final size:26
Alignment explanation
Indices: 20331372--20331424 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20331362 GTTGACTTAG
* *
20331372 GCATATGCTGTTCATTCCTAGTCTAA
1 GCATATGCAGTTCATTCCCAGTCTAA
* *
20331398 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGCAGTTCATTCCCAGTCTAA
20331424 G
1 G
20331425 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATGCAGTTCATTCCCAGTCTAA
Found at i:20333544 original size:698 final size:719
Alignment explanation
Indices: 20332609--20334378 Score: 2299
Period size: 734 Copynumber: 2.5 Consensus size: 719
20332599 AAAGTGTCTG
* *
20332609 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
20332674 ACGTCTTCCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAACCCGAACCCCAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-GAAAAATTTTAAAAAATCCCGAACCGCAAAA
20332739 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
130 AGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
20332804 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
194 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
** * *
20332869 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTTTCGTCGGCGTAGT
259 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGT
* * *
20332934 GCC-CAC-C-CG-C-TCGTTTCGTCAGTTGACTTAGGC-ATACGAAGTTCATTCCCA-ATCTAAG
324 GCCTCACGCTCGCCGTCGGTTCG-CAGGTGACTTAGGCGATACGAAGTTAATTCCCAGATCTAAG
* *
20332992 -ATAG-G-A-CT-GGACT-G-AG-GG-TT-A-CAATAGCACATGCTAGGCTCAGGCATGTGCTGG
388 AACAGAGTATCTAGGACTAGAAGCGGATTGAGCAACAGCACAT-CTAGGCTCAGGCATGTGCTGG
* * * * * *
20333046 TGCCATATTTTTC-TTCGCCGGGGCA-CCATCCTCGGAGCATCGTCGGAGAACCTGACCGACGGC
452 TGCCACATTTTTCTTTC-CC-GGGAAGCCATCCTCGAAGCATCATCAGAAAACCTGACCGACGGC
*
20333109 ATTGGGGTT-TCAACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGCCAATGGGTGCTGG
515 ATTGGGGTTCT-AACGATCGAGGGGGCCGGGGGGTGTGCGCACAAGATGTG-CAATGGGTGCTGG
*
20333172 TACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
578 TACGTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGA
* * *
20333237 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTGAAATG-GGACACTTTT
642 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCAGAAATGAGGACAATTAT
20333300 TTCAAATGGGCAC-
706 TTCAAATGGGCACA
** * *
20333313 AAATCTTGTACACCACGAG-TTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAGGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
20333377 ACGTCTACCAAGTTT-AGGCCAAAAATCCTTCCGAAAAATTTTAAAAAATCCCCAACCGCAAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
20333441 GTTTCAAAAT-GTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAG
131 GTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
20333504 GAGACCATTGTATGAA-TTACCAGCCATAAAAATGGCATTGGCACATAGAAATATG-AGATGTGC
196 G-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
20333567 CTAAACCCACCTACCACCCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTTGGCCGG-GTAG
260 CTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGTGCATCCCGTCTCT-TTGGCCGGCGTAG
* * * * * *
20333631 TGCCTTGCTCGCTCGCCCGGTCGGTTCGCTGGTGGCTTAGGCGATATGGAGTTAATTCCCAGGTC
323 TGCC-T-CACGCTCG-CC-GTCGGTTCGCAGGTGACTTAGGCGATACGAAGTTAATTCCCAGATC
* **
20333696 TAAGCAACAGAGTTCATTTCTCTAGGTCTAAGATCAGACCGGATTGAGGTTGCGGCAGCACATCT
384 TAAG-AACAGAG-T-A----TCTAGGACT-AGA--AG--CGGATTGA----GCAACAGCACATCT
* * * * *
20333761 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCTCGGGAAGCCATCGTCGAAGCATCATCAG
433 AGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTCCCGGGAAGCCATCCTCGAAGCATCATCAG
* * * * *
20333826 AAAACCTGACTGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGTGTGCGCACAAGATG
498 AAAACCTGACCGACGGCATTGGGGTTCTAACGATCGAGGGGGCCGGGGGGTGTGCGCACAAGATG
* * *
20333891 TGCGATGGGTGCTGGTACGTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
563 TGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTC
*
20333956 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAA
628 ACACCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAA
*
20334021 TGAGGACAATTATTTCAAATGGTCACA
693 TGAGGACAATTATTTCAAATGGGCACA
* * *
20334048 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGTATGCCAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
20334113 GCGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAA
* * * * * *
20334178 AGTTTAAAAAATCATGAAAAATAGAAAACGAAGTCATCTTGGCAAGAAACTTGACGTGAAGGCTT
130 AGTTT-CAAAATCGTGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* **
20334243 AAGGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
193 AA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
20334308 TGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCATGCCGTCTCTCTGGCCGGCGTA
257 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTA
20334373 GTGCCT
322 GTGCCT
20334379 GCCCACCCGC
Statistics
Matches: 922, Mismatches: 85, Indels: 80
0.85 0.08 0.07
Matches are distributed among these distances:
697 24 0.03
698 119 0.13
699 31 0.03
700 5 0.01
701 35 0.04
702 17 0.02
703 57 0.06
704 17 0.02
705 1 0.00
706 11 0.01
707 22 0.02
708 6 0.01
710 3 0.00
711 1 0.00
714 1 0.00
719 2 0.00
720 4 0.00
722 1 0.00
725 2 0.00
728 2 0.00
729 2 0.00
730 1 0.00
733 64 0.07
734 159 0.17
735 57 0.06
736 55 0.06
737 16 0.02
738 34 0.04
739 5 0.01
740 10 0.01
741 5 0.01
742 53 0.06
743 76 0.08
744 24 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (719 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATTTTAAAAAATCCCGAACCGCAAAAA
GTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGC
CTCACGCTCGCCGTCGGTTCGCAGGTGACTTAGGCGATACGAAGTTAATTCCCAGATCTAAGAAC
AGAGTATCTAGGACTAGAAGCGGATTGAGCAACAGCACATCTAGGCTCAGGCATGTGCTGGTGCC
ACATTTTTCTTTCCCGGGAAGCCATCCTCGAAGCATCATCAGAAAACCTGACCGACGGCATTGGG
GTTCTAACGATCGAGGGGGCCGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACGTGGC
CCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTCGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGAGGACAATTATTTCAAATGGG
CACA
Found at i:20334615 original size:26 final size:26
Alignment explanation
Indices: 20334578--20334630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20334568 GTTGACTTAG
* *
20334578 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20334604 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20334630 G
1 G
20334631 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20336379 original size:26 final size:26
Alignment explanation
Indices: 20336343--20336395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20336333 GTTGACTTAG
*
20336343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20336369 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20336395 G
1 G
20336396 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20337284 original size:26 final size:26
Alignment explanation
Indices: 20337250--20337299 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20337240 TGACTTAGGC
*
20337250 ATACGGAGTTCATTCCCAGTCTAACA
1 ATACAGAGTTCATTCCCAGTCTAACA
20337276 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
20337300 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAACA
Found at i:20338182 original size:26 final size:26
Alignment explanation
Indices: 20338149--20338204 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20338139 TTGGTTGACT
20338149 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
* *
20338175 TAAGCATACGGAGTTCATTGCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
20338201 TAAG
1 TAAG
20338205 ATTGTACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:20338472 original size:136 final size:136
Alignment explanation
Indices: 20338228--20338481 Score: 395
Period size: 136 Copynumber: 1.9 Consensus size: 136
20338218 GAGGGTTGCA
* ** * *
20338228 GCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCG
1 GCAGCACATGCTGGGCTCAGACATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
* *
20338293 GAGCATCGTCGTAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGACCAGACAGAGA
66 GAGCATCGCCGTAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGACCAGACAGAGA
20338358 TTTAGG
131 TTTAGG
* *
20338364 GCAGCACATGCTGGGCTCAGACATATGCTGGTGCCACATTTTTCTTCGTCGTGGCACCATCGTCG
1 GCAGCACATGCTGGGCTCAGACATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
20338429 GAGCATCGCCAG-AGAACCTGACCGGCGGCATT-GAGGTTCCGACGATCGGGGGG
66 GAGCATCGCC-GTAGAACCTGACCGGCGGCATTAG-GGTTCCGACGATCGGGGGG
20338482 GCCGGGGGGT
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
135 1 0.01
136 105 0.98
137 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (136 bp):
GCAGCACATGCTGGGCTCAGACATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
GAGCATCGCCGTAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGACCAGACAGAGA
TTTAGG
Found at i:20339890 original size:4 final size:4
Alignment explanation
Indices: 20339881--20339910 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
20339871 CCGATGTAGT
*
20339881 GCCC GCCC GCCC GCCT GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
20339911 TCGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:20339901 original size:16 final size:16
Alignment explanation
Indices: 20339880--20339910 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
20339870 GCCGATGTAG
20339880 TGCCCGCCCGCCCGCC
1 TGCCCGCCCGCCCGCC
20339896 TGCCCGCCCGCCCGC
1 TGCCCGCCCGCCCGC
20339911 TCGTTTCGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.68, G:0.26, T:0.06
Consensus pattern (16 bp):
TGCCCGCCCGCCCGCC
Found at i:20340122 original size:26 final size:26
Alignment explanation
Indices: 20340091--20340143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20340081 GTTGACTTAG
*
20340091 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
20340117 GCATATAGTGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
20340143 G
1 G
20340144 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:20340564 original size:893 final size:881
Alignment explanation
Indices: 20338344--20341163 Score: 3591
Period size: 903 Copynumber: 3.2 Consensus size: 881
20338334 ACGATCGGGG
* * * * * *
20338344 GGACCAGACAGAGATTTAGGGCAGCACATGCTGGGCTCAGACATATGCTGGTGCCACATTTTTCT
1 GGACCAAACAGAGGTTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
20338409 TCGTCGTGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGA
66 TCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGA
20338474 TCGGGGGGGCCGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
131 T-------G-CGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
20338539 GCCCCCTATCCCTCATCAAACCTCGAGAACTCCACCCCCTTAAAGAGCATTTGAGATTTTACAAG
188 GCCCCCTATCCCTCATCAAACCTCGAGAACTCCACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
20338604 TTTGCTGCCAGTCGCCATTAAAGTATCTTAAATGGGGACAATTTTTTAAATGGTCACAAAATCTT
253 TTTGCTGCCAGTCGCCATTAAAGTATCTTAAATGGGGACACTTTTTTAAATGGTCACAAAATCTT
* *
20338669 GTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
318 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
20338734 CCAAGTTTGGGACCAGAACTCCTTCCGAAAAAAATTTTAAAAAATCTCGAGCCGCAAAAAGTTTT
383 CCAAGTTTGGGACCAAAACTCCTTCCG------A----AAAAAATCTCGAGCCGCAAAAAGTTTC
* * * * *
20338799 AAAAATCATGAAACATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGATGGCTTATGAGAC
438 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
20338864 CGTTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
503 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATAGAAATATGAAGATGTGCCTAAA
*
20338929 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C-TG-A-----CG-T
566 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGTGTAGTGCCCGCC
* * *
20338985 AG-TGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
631 CGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
** * * *
20339049 GATTGGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGTACACAGAGGGGGACCCGACCGATC
696 GATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGATAGTACGCAGAGGGGGACCCGACCGATC
* **
20339114 CCCGGCTTGCGCGTCCCGCCCCTCTTTCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
761 CCCGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACT
* *
20339179 TAGGCATACGGAGTTCATTTTGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
825 TAGGCATACGGAGTTCA--TTCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGATC
* * * * * *
20339239 GGACCGAATAGAGGTTTACGGTAGCACATGCTAGGCTTAGGCATGTGCTGGTGCAGCATTTTTCT
1 GGACCAAACAGAGGTTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * *
20339304 TCGTCGGGGCACCATTGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCCACGA
66 TCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGA
20339369 TCAGGGGGGCCGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
131 T-------G-CGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
20339434 GCCCCCTA-CCCTCGTCAAACCTTGAGAACTCCACCCCCTTAAAGAGCATTTGAGATTTTACAGG
188 GCCCCCTATCCCTCATCAAACCTCGAGAACTCCACCCCCTTAAAGAGCATTTGAGATTTTACAGG
20339498 TTTGCTGCCAGTCGCCATTAAAGTATCTTAAATGGGGACACTTTTTTAAATGGTCACAAAATCTT
253 TTTGCTGCCAGTCGCCATTAAAGTATCTTAAATGGGGACACTTTTTTAAATGGTCACAAAATCTT
*
20339563 GTACATTTCGAGTTTTTAGCT-AACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
318 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
20339627 ACCAGGTTTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAGCCGTAAAAAGTTTC
382 ACCAAGTTTGGGACCAAAACTCCTTCCG---------AAAAAAATCTCGAGCCGCAAAAAGTTTC
* * **
20339692 AAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCGGGAAACTTCACGTGAAGGCTTAAGGGAC
438 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** *
20339757 CATTGTATGAATTTACAAGCCATAAAAATGGCATCAGAATGTAGAAATATGAAGATGTGCCTAAA
503 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--TAGAAATATGAAGATGTGCCTAAA
* *
20339822 CCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGC
566 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-TGTAGT----GC
*
20339887 CCGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
626 CCGCCCG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* *
20339952 GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGATAGTACGTAGAGGGGGACCCGA
690 GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGATAGTACGCAGAGGGGGACCCGA
* * * * * *
20340017 CAGATCCCCGGCTCGTGCATCCCGCCCCTCTAGCTGGCTGAGCGCCATCACGCTCATTTCATTGG
755 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCGCC-GCACGCTCATTTCGTGGG
* *
20340082 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATAGTGTTCATTCCCAGTCTAAGATC
819 TTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGATC
* * *
20340147 GGACCAAACAGAGGTTTATGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
1 GGACCAAACAGAGGTTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * ** * *
20340212 TCACCGGGGCACCATCACCGGAGCATTACCGGAGAACCTGACCGGTGGCATTGAGGTTCCGGCGA
66 TCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGA
*
20340277 T-TGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
131 TGCGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
20340341 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTG
196 TCCCTCATCAAACCTCGAGAACTC-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
20340406 CCAGTAGCCATTAAAGTAT-TTGGAATGGGGACACGTTTTTTCAAATGGACACAAAATCTTGTAC
260 CCAGTCGCCATTAAAGTATCTT-AAATGGGGACAC-TTTTTT-AAATGGTCACAAAATCTTGTAC
* *
20340470 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
20340535 GTTTGGGGCTAAAAGTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAA
387 GTTTGGGACCAAAACTCCTTCCG-----A----AAAAAATCTCGAGCCGCAAAAAGTTTCAAAAA
*
20340600 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTG
443 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** *
20340665 TATGAATTTACAAGCCATAAAAATTTCATTGGCATAGAAATATGAAGATGTGCCTAAAGCCACCT
508 TATGAATTTACAAGCCATAAAAATGGCATTGGCATAGAAATATGAAGATGTGCCTAAACCCACCT
*
20340730 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT--
573 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GTGTAGTGCCCGCCCGCTGC
20340793 ---------CG-T--TTT-GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
637 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
20340845 ATCGGACCAAGAGTTGCAGCAACAAGATCGGTAGCT-TGCAGAGGGGGACCCAACCGATCCCTGG
702 ACCAGACCGAGGGTTGCAGCAGCAAGATCGATAG-TACGCAGAGGGGGACCCGACCGATCCCCGG
* * *
20340909 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCCGCCGCACGCTCATTTCGTGGGTTGACTTAGGC
766 CTTGCGCATCCCGCCCCTCTAGCTGGCTGAG-CGCCGCACGCTCATTTCGTGGGTTGACTTAGGC
*
20340974 ATACGGAGTTCATTCCAGTCTAAGCATACGAAGTTCATTCCCAGT-TAAGATC
830 ATACGGAGTTCATTCCAGTCTAAGCATAAG-AGTTCATTCCCAGTCTAAGATC
** * * * * * *
20341026 GGACTGGACCA-AGGGTTGCGGCAGCACATTCTGGGCTCGGGCAGGTGCTGGTGCCGCATTTTTC
1 GGAC-CAAACAGAGGTTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * * *
20341090 TTTGCCTGGGCAGCATCGCCGGAGCATCGCCGGAGAACCTGATCGACGACATTGGGGTTCTGGCG
65 TTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACG
20341155 AT-CGGGGGG
130 ATGCGGGGGG
20341164 NNNNNNNNNN
Statistics
Matches: 1711, Mismatches: 175, Indels: 94
0.86 0.09 0.05
Matches are distributed among these distances:
879 119 0.07
880 30 0.02
881 160 0.09
882 8 0.00
884 1 0.00
885 2 0.00
891 1 0.00
893 185 0.11
894 202 0.12
895 185 0.11
896 4 0.00
897 14 0.01
899 65 0.04
900 23 0.01
901 145 0.08
902 7 0.00
903 215 0.13
904 2 0.00
906 2 0.00
907 3 0.00
908 152 0.09
909 186 0.11
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (881 bp):
GGACCAAACAGAGGTTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
TCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGA
TGCGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTCGCCATTAAAGTATCTTAAATGGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGACCAAAACTCCTTCCGAAAAAAATCTCGAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGTGTAGTGCCCGCCCGCTGCCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
TGCAGCAGCAAGATCGATAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
CCTCTAGCTGGCTGAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
AGTCTAAGCATAAGAGTTCATTCCCAGTCTAAGATC
Found at i:20341008 original size:25 final size:25
Alignment explanation
Indices: 20340972--20341022 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
20340962 GTTGACTTAG
*
20340972 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGT-TAA
20340997 GCATACGAAGTTCATTCCCAGTTAA
1 GCATACGAAGTTCATTCCCAGTTAA
20341022 G
1 G
20341023 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCCAGTTAA
Found at i:20342348 original size:26 final size:26
Alignment explanation
Indices: 20342312--20342363 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20342302 TGGTCTGATA
20342312 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
20342338 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20342364 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20343079 original size:26 final size:26
Alignment explanation
Indices: 20343043--20343095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20343033 CTTGTCTGAT
20343043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20343069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20343095 C
1 C
20343096 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20343964 original size:26 final size:26
Alignment explanation
Indices: 20343928--20343984 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
20343918 CCGATCCGAT
*
20343928 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20343954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20343980 CTTAG
1 CTTAG
20343985 GTCAACCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20347332 original size:26 final size:26
Alignment explanation
Indices: 20347296--20347348 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20347286 CTGGTCAGAT
20347296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20347322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20347348 C
1 C
20347349 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20349121 original size:26 final size:26
Alignment explanation
Indices: 20349078--20349130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20349068 CTAGTCTGAT
20349078 CTTAGACTTGGAAAGAACTCCGTATG
1 CTTAGACTTGGAAAGAACTCCGTATG
*
20349104 CTTAGAC-TGGAATTGAACTCCGTATG
1 CTTAGACTTGGAA-AGAACTCCGTATG
20349130 C
1 C
20349131 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGAAAGAACTCCGTATG
Found at i:20350908 original size:26 final size:26
Alignment explanation
Indices: 20350872--20350921 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20350862 GTCCGATGTT
20350872 AGACTAGGAATGAAC-TCTGTATGCTG
1 AGACTAGGAATGAACTTC-GTATGCTG
*
20350898 AGACTGGGAATGAACTTCGTATGC
1 AGACTAGGAATGAACTTCGTATGC
20350922 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTTCGTATGCTG
Found at i:20351810 original size:26 final size:26
Alignment explanation
Indices: 20351772--20351824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20351762 CTGGTCTGAT
20351772 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
20351798 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20351824 C
1 C
20351825 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20352722 original size:26 final size:26
Alignment explanation
Indices: 20352672--20352722 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20352662 CCGGTCCGAT
*
20352672 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACGCCGTATG
* *
20352698 CTTAGACTGGGAATGAACGCTGTAT
1 CTTAGACTGGAAATGAACGCCGTAT
20352723 TCCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACGCCGTATG
Found at i:20352915 original size:899 final size:896
Alignment explanation
Indices: 20346434--20354523 Score: 10056
Period size: 899 Copynumber: 9.0 Consensus size: 896
20346424 CCGGTCTGAT
*
20346434 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
20346499 CGGCCAGAGGTACGGGATGCGCAAGCC-GAGGATCGGCCGGGTCCCCATCTGCGTGCTGCCGATC
66 CAGCCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGACTGGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** * * **
20346563 TTGCCACCATAACCCTCGGTCCA-GTCTAATCTTAGACTGGGAATTAACTTAGTATGCCTAA-CC
130 CTACTACCGCAACCCTCGGT-CAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
20346626 AACCGACGAAACGAGCGGGTGGGCGGGCAAGG-ACTACGTCGGCCAGAGAGACGGGATGCGCAAG
194 AACCGACGAAACAAGCGGACGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * **
20346690 CCGTGGATCGATAGAGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
*
20346755 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
20346820 ACTCATTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
20346885 GGAAGGGGTTTTGGCCCCAAACTTGGTACACGTGATCCTCT-TATTTTTTTTGGCATGCACAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTTTTGGCATGCACAAAA
* * * *
20346949 AAACTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCTCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * * *
20347014 AAACACTTTAATGGCTACTAGCAGCAACCCTGTAGAATCTGAAATACTCTTTAAGGGGTTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * * *
20347079 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCATGTACCCGTACCCACCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
20347144 CATGTGCGCACACCCCCCCGGCCCCCCCGACCGTCGGAACCCCTATGCCGCCGGTCAAGTTCT-C
712 CATGTGCGCACA-CCCCCTGGGCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCC
* * *
20347208 --C-A-------ACGATGATGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
20347263 CATGTGCTGCCGTAACTCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATG
840 CATGTGCTG-CGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
* *
20347322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
20347387 C-GACCAGATGGGTGGGATGCGTAAGTCGGCGATCGACCGAGTCCCCCTCTGCATGCTGTCGATC
66 CAG-CCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
20347451 CTACTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAA
130 CTACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
20347516 ACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAAC-A---AGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20347581 AGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACACCGTCATATTTCTATGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
*
20347646 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * *
20347711 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
20347776 TTGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC--ACA
* *
20347841 AAAAAATTCAGCTAAAAACTCGACGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
20347906 TTTAGACATTTTAATGGTTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAA-GGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * * ** * *
20347970 GAGTTCTCGAGGTTTGATGAATGATATGGGGCCAATAAAAGGTTCAAGTACTAGCACCCATCACA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** * *
20348035 CATCATGTGCGGATGCCCCCCCT-GGCCCACCCGATCGTCGGAACCCCAAAACCACCGATCAGGT
709 CATCATGTGCGCA--CACCCCCTGGGCCC-CCCGATCGTCGGAACCCC-AATGCGCCGGTCAGGT
* ** * * * *
20348099 TCTCCAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCTCTAGCACATGCTCGAG
770 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
20348164 CCTAGCA--TG-TGC-T-A--C-C-GTAAC---CC--TC--AGTCT-G-AT---CT--G-AT-
835 CCCAGCATGTGCTGCGTAACCCTCGGT-CCGGTCCGATCTTAGACTGGAATGAACTCCGTATG
*
20348202 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * ** * * *
20348267 CTGCCAGAGGGGTGGGATGCGCAAG-TTGAGGATCGACTGAGTCCCCTTCTGTATGCTGTCAATA
66 CAGCCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGACTGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
20348331 ATGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20348396 ACCAACGAAACGAGCAAGCGGACGGGCGGGCAGGCACTCCGTCGACCAGAGAGACGGGATGCGCA
195 ACCGACG-AA--A-CAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20348461 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAAAGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* *
20348526 ATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
20348591 CTACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTGGGGATTTTTTTAATTTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
20348656 TCGAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTTGTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
20348721 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAAGTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20348786 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGAGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20348851 GTTCTCGAGGTTTGATGTGGGATAGTGGGCCAATATAAGGGCCGAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
20348916 TCATGTGCG-ACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATACTGCCCGTCAGGTTCTC
711 TCATGTGCGCACACCCCCTGGGCCCCC-CGATCGTCGGAACCCCAATGC-GCCGGTCAGGTTCTC
** * *
20348980 CGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAGAATGCGACACCAGCACAT-CCCGAGCCCA
774 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * *
20349044 GCGTGTGCTGTCGTAACCCTCGGTCTAGTCTGATCTTAGACTTGGAAAGAACTCCGTATG
839 GCATGTGCTG-CGTAACCCTCGGTCCGGTCCGATCTTAGAC-TGGAATGAACTCCGTATG
* * *
20349104 CTTAGACT-GGAATTGAACTCCGTATGCCTGAGTCAACCCACGAAACAAGCGTACGGGCGCT-AG
1 CTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
20349167 TCAGCCAGAGGGGCAGGATACGCAAGTCTGAGATTGGCTGGGTCCCCCTTTGCGTGCTGCCGATC
65 CCAGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
20349232 CTGCTACCGAAACCCTTGGTTC-GGTCTGATTTTAGACTGGGATTGAACTCCATATGCCTAAGCC
130 CTACTACCGCAACCCTCGG-TCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
20349296 AACCGACGAAACAAGCGGGA-GGGCGAGTGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCG
194 AACCGACGAAACAAGC-GGACGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
20349360 TAAGTCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTGTGCCAATG
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
* *
20349425 CCATTTTTATGGCTTGTAAATTCATACAA-CGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
20349489 GAACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTT-AAATT
384 G-ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * ** * *
20349552 TTTCCGAAAGGAGTTTTCAACCCCAAACCTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCA
448 TTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * *
20349617 TAAAAACATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
20349682 ATTTCAGACACTTTAATGGCTACTGGCAACAAACCGGTAAAATCCCAAATGCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** * *
20349747 GTGAGTTCTCAAGGTTTGATG-GGAGATAAGGGGCTGATATAAGAGCCAAGTACCAGCACCCATT
642 GTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
20349811 GCACATAATGTGCGCACGCCCCCCCGGCCCCCCCGATCG-CTGCAACCCCAATGCCGCTGGTCAG
706 GCACATCATGTGCGCAC-ACCCCCTGGGCCCCCCGATCGTC-GGAACCCCAATG-CGCCGGTCAG
* *
20349875 GTTCTCCGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCC
768 GTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
20349939 GAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
832 GAGCCCAGCATGTGCTG-CGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTA
20350004 TG
895 TG
* * * *
20350006 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
20350071 C-GACAAGAGGGGCGGCATGCACAAGCTGGGGATTG-GTCGGGTCCCCCTCTGCATGCCGCTGAT
66 CAG-CCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
20350134 CCTACCACC-CAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCC
129 CCTACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* **
20350198 AATCGAC--AA-AA-C-GA---GCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC
194 AACCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* **
20350255 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
* * *
20350320 TTTATGGCTTGTAAATTCATACAATGGCCCCTTATGCCTTCACGTGAAGTTGCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* **
20350385 CTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
20350450 GAATGAGTTTCGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACGAAAAG
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * * * **
20350515 ATTCAGCTAAAAACTCAAACTGCACAAGATTTTGTGATCATTTGAAAAAAACGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20350580 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
20350645 CTCGAGGTTTTATGAGCAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** *
20350710 TGTGCGCACAGCCCCC-GGCCCCCCCGATCGCCGGAA-CCCAATGC-CTCATGTCAGGGGCTCTT
714 TGTGCGCACA-CCCCCTGGGCCCCCCGATCGTCGGAACCCCAATGCGC-C-GGTCAGGTTCTC-C
* * * **
20350772 G-CGATGCTCAGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCTTAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
20350836 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATGTTAGACTAGGAATGAACTCTGTATG
840 CATGTGCTG-CGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
* * *
20350895 CTGAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20350960 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCG-GTCGGGTCCCCCTCTGCGTGCTGTCGATC
66 CAGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
20351024 TTACTACCGCAACCCTCAGCCA-GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20351088 ACTGACGAAACGAGCGGGCGGGCGAGGGGACGGGCACGACGCCGGCCAGAGAGACGGGATGCGCT
195 ACCGACGAAACAAGCGGACGGGC---GGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20351153 GGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* *
20351218 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
20351283 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** *
20351348 TTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * * *
20351413 AAATTTCAACTAGAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
**
20351478 CAGACGTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *** *
20351543 GTTCTCAAGGTTTGATGAAATATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
20351608 TCATGTGCGCACGCCCCATCGGCCCACCCGATCGTCGGAACCCCAAAAT-CGTCGGTCGGGTTCT
711 TCATGTGCGCACACCCCCTGGGCCC-CCCGATCGTCGGAACCCC--AATGCGCCGGTCAGGTTCT
** * * * * * ** * *
20351672 TTGGCGATGCTCTGGCAATAGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCC
773 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
20351737 AGCATGTGCTGTCGTAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
838 AGCATGTGCTG-CGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * * * *
20351798 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGTGGGCACTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
20351862 CAGGCCAGAGGGGCGAGATGCGCAAGTCGG-GTATCG-GTCGGGTCCCCCTCTATGTGCTGCCGA
66 CA-GCCAGAGGGGCGGGATGCGCAAGCCGGAG-ATCGACT-GGGTCCCCCTCTGCGTGCTGCCGA
* * * * * **
20351925 TCCTACTACTGCTACCCGT-GGTCCGGTCTGATCTTGGACTGGGAATAAACTCTATATGCCTAAG
128 TCCTACTACCGCAACCC-TCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * ***
20351989 CCAACTGACGAAATGAGTGGGCGGGCGGGTGGGCACTACGCCGCCCAGAGAGACGGGACATGCAA
192 CCAACCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * ***
20352054 GTCGTGGATGGATAGGGTGGTA-GTGGGTTTAGCCACATCTTCATATTTCTGCAAGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
20352118 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
20352183 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
20352248 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
20352313 AAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20352378 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
20352443 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
20352508 CATGTGTGCACAACCCCACTGGGCCCCCCGATCGTCGGAACCCCAATGCAGTCGGTCAGGTTCTC
712 CATGTGCGCAC-ACCCC-CTGGGCCCCCCGATCGTCGGAACCCCAATGC-GCCGGTCAGGTTCTC
* * * *
20352573 CGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCAA
774 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* **
20352638 GCATGTTCTGCAACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATG
839 GCATGTGCTGC-GTAACCCTCGGTCCGGTCCGATCTTAGACTGG-AATGAACTCCGTATG
* * * * * *
20352698 CTTAGACTGGGAATGAACGCTGTATTCCTAAGTTAACCCACGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20352763 CAGCC-TAGGGGCGGGATGCGCAAGCCGGAGATCGACTGAGTCCCCCTCTGTGTGCTACCGATCC
66 CAGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
20352827 TGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20352892 CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACACCAGCCAAAGAGATGGGATGCGCAAGCTG
196 CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20352957 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * *
20353022 TATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCTCGTGAAGTTTCAGGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * **
20353087 CGTTTTTTATTTTTCACGATTTTTGAAAGTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* ** * * * *
20353152 AGGATTTTTGGCAACAAACTTGGTAGACGTGATCCTTTTATCTTTGTTGGCATGTACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * * * * * *
20353217 TCAACTAAAAACTCAAATTGTACAAGATTTTGTGACCATTGGAAGAAAGTGTCCCCATTTAAAAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
** * * *
20353282 ACTTTAATGGCTACCAGCAGCAATCCTCTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
20353347 CGAGGATTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
20353412 TGCGCACA-CCCCTCGGCCCCCCCGATCGCCGGAACCCTAATTCCGCCAGTCCGATTCTCCGATG
716 TGCGCACACCCCCT-GGGCCCCCCGATCGTCGGAACCCCAA-TGCGCCGGTCAGGTTCTCCGACG
* * * * ** *
20353476 ATGCTCCAACAATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATA
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20353541 TGCTGCTGTAACCCTCGGTTCGGTCCGATCTTAAACTGTGAAAGAACTCCATATG
844 TGCTGC-GTAACCCTCGGTCCGGTCCGATCTTAGACTG-GAATGAACTCCGTATG
* * * * *
20353596 CTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGTTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
20353660 CAGGCCAGAGGGGCGATATGCGCAAG-CTGAGGATCGA-TCGGGTTCCCCTCTGCGTGCTGTCGA
66 CA-GCCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGACT-GGGTCCCCCTCTGCGTGCTGCCGA
** * * * * * * *
20353723 TCCTACTATTGTAACCCTCAGTCCGATCTGATCTTAGACAGGGAATGGACTCCGTATACCTAAGC
128 TCCTACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
20353788 CAACCGACGAAACGAGCGGGCGGGCGAGTGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAG
193 CAACCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
20353853 CCATGGATCAATAGGGTCGTAGGTGGGTTTAGGCATATCTTCTTATTTCTGTGTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
*
20353918 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
20353983 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAACTTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
20354048 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
20354113 AATTCAACTAAAAAATC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20354177 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20354242 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
20354307 CATGTGCGAACAACCCCCTCCCCGGCCCCCCTGATCGCCGGAACCCCAATGC-CTCTAGTCAGGT
712 CATGTGCGCAC-ACCCCCT---GGGCCCCCC-GATCGTCGGAACCCCAATGCGC-C-GGTCAGGT
* *
20354371 TCTCCGACGATGCTCCGACGATGGTGCTCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
770 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
20354436 -CCAGCATGTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATC
835 CCCAGCATGTGCTGC-GTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
*
20354499 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20354524 CCTTAGACTA
Statistics
Matches: 6233, Mismatches: 819, Indels: 285
0.85 0.11 0.04
Matches are distributed among these distances:
876 21 0.00
877 81 0.01
878 118 0.02
879 74 0.01
880 456 0.07
881 6 0.00
882 2 0.00
883 2 0.00
884 4 0.00
885 1 0.00
886 2 0.00
887 5 0.00
888 160 0.03
889 295 0.05
890 203 0.03
891 272 0.04
892 28 0.00
893 272 0.04
894 78 0.01
895 143 0.02
896 7 0.00
897 16 0.00
898 214 0.03
899 1183 0.19
900 930 0.15
901 836 0.13
902 252 0.04
903 382 0.06
904 142 0.02
905 3 0.00
906 45 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTACCGCAACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCTGGGCCCCCCGATCGTCGGAACCCCAATGCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTATG
Found at i:20354059 original size:24 final size:25
Alignment explanation
Indices: 20354003--20354060 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
20353993 TATTTTTCAT
*
20354003 GATTTTTGAAACTTTTTACGGTTCAG
1 GATTTTTGAAACTTTTTACGG-TAAG
* *
20354029 GATTTTTTAAACTTTTTTCGG-AAG
1 GATTTTTGAAACTTTTTACGGTAAG
20354053 GATTTTTG
1 GATTTTTG
20354061 GCCCCAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 9 0.32
26 19 0.68
ACGTcount: A:0.22, C:0.09, G:0.19, T:0.50
Consensus pattern (25 bp):
GATTTTTGAAACTTTTTACGGTAAG
Found at i:20354511 original size:26 final size:26
Alignment explanation
Indices: 20354473--20354549 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
20354463 CCAGTCTGAT
*
20354473 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
20354499 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
20354525 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
20354550 GCCTAAGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:20355300 original size:26 final size:26
Alignment explanation
Indices: 20355271--20355349 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
20355261 CCAGTCCGAT
* *
20355271 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20355297 CTTAGACTGGCAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATG
*
20355323 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20355349 C
1 C
20355350 CAAGTCAACC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20355698 original size:159 final size:160
Alignment explanation
Indices: 20355323--20355691 Score: 451
Period size: 159 Copynumber: 2.3 Consensus size: 160
20355313 ACTCCGTATC
* * *
20355323 CTTAGACTAGGAATGAACTCCGTATGCC-AAGTCAACCCACGAAACGAGCGTCCGAGCACTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * * *
20355387 CAGCCAGAAGGGTCGGGATGCATAAGCCAGGGATCGGTCGGGTCCCATTCTGTGTGCTACCGATC
66 CAGCCAGAAGGGGCGGGATGCACAAGCCAGGGATCGGCCGGGTCCCACTCTGCGTGCTACCGATC
*
20355452 CTACTGTAGCAACCCTTGGTCCGGTCCGAT
131 CTACTGTAGCAACCCTTGGTCCGATCCGAT
*
20355482 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGC
* ** * **
20355547 CGGCCAG-AGGGGCGGGATG-AGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGAT
66 CAGCCAGAAGGGGCGGGATGCA-CAAGCCAGGGATCGGCCGGGTCCCACTCTGCGTGCTACCGAT
* * *
20355610 CCTGCTGTCGCAA-CCTTCGGTCTGATCC-AGT
130 CCTACTGTAGCAACCCTT-GGTCCGATCCGA-T
* * * * * *
20355641 CTTGGACTGGGAATGAACTCTGTACGCCTAAGCCAACCGATGAAACGAGCG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
20355692 GGCGGGCAGG
Statistics
Matches: 181, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
158 6 0.03
159 137 0.76
160 38 0.21
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (160 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGC
CAGCCAGAAGGGGCGGGATGCACAAGCCAGGGATCGGCCGGGTCCCACTCTGCGTGCTACCGATC
CTACTGTAGCAACCCTTGGTCCGATCCGAT
Found at i:20356374 original size:26 final size:26
Alignment explanation
Indices: 20356345--20356397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20356335 CCAGTCCGAT
20356345 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
20356371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
20356397 C
1 C
20356398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:20357468 original size:26 final size:26
Alignment explanation
Indices: 20357432--20357510 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20357422 CCGATCCAAT
*
20357432 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20357458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
20357484 CTTAGATTATGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20357510 C
1 C
20357511 CTAAGTCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20357773 original size:159 final size:159
Alignment explanation
Indices: 20357494--20357852 Score: 486
Period size: 159 Copynumber: 2.3 Consensus size: 159
20357484 CTTAGATTAT
* * *
20357494 GAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
* * *
20357559 GGCAGGATGCACAAGTCGGGGATCGACCGGATCCCCCTCTACATGCTACCGATCCTGCTGT-AGC
66 GGCAAGATGCACAAGCCGGGGATCGACCGGATCCCCCTCTACATGCTACCGATCCTGCTATCA-C
*
20357623 AACCCTCGGTCCGATTCGATCTTAGACTGG
130 AACCCTCGGTCCGATCCGATCTTAGACTGG
* * *
20357653 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGTGCGCTCAGTCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
* * * * * **
20357718 GGCAAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCACA
66 GGCAAGATGCACAAGCCGGGGATCGACCGGATCCCCCTCTACATGCTACCGATCCTGCTATCACA
* * * * *
20357783 ACCTTCGGTCTGGTCCGATCTTGGACTTG
131 ACCCTCGGTCCGATCCGATCTTAGACTGG
* *
20357812 GAATGAACTCCGTATGCCTAACTCAACCGACGAAACGAGCG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
20357853 GGCGGGCAGG
Statistics
Matches: 175, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
159 174 0.99
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGG
GGCAAGATGCACAAGCCGGGGATCGACCGGATCCCCCTCTACATGCTACCGATCCTGCTATCACA
ACCCTCGGTCCGATCCGATCTTAGACTGG
Found at i:20358549 original size:26 final size:26
Alignment explanation
Indices: 20358520--20358572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20358510 CTGGTTCGAT
* *
20358520 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20358546 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20358572 C
1 C
20358573 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20359398 original size:907 final size:903
Alignment explanation
Indices: 20357643--20361251 Score: 4715
Period size: 898 Copynumber: 4.0 Consensus size: 903
20357633 CCGATTCGAT
*
20357643 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGTGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * *
20357708 CGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * * * *
20357773 TGCTATCACAACCTTCGGTCTGGTCCGATCTTGGACTTGGAATGAACTCCGTATGCCTAA-CTCA
131 TGCTACCACACCCTTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CA
* * * * * * *
20357837 ACCGACGAAACGAGCGGGCGGGCAGG-CAGGCAGGCACTACGCCGGCCAGGGTGACGGGATGCAC
195 ACCGACGAAATGAACGGGCGGGC-GGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
20357901 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
20357966 CATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-CCGTTTCATGGCAA
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAC-TTTCATGGCAA
* **
20358030 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCTATTCAGGATTTTTTAAAATTT
388 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAA-TT
* *
20358095 TTTTC-GAAGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGAATTTTT-TTGGCACGAAC
452 TTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCAC
* *
20358158 AAAAAAATTCAGCTAAAAACTCCAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
20358223 TTTCAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
20358288 TGAGTTCTCAAGGTTTGAT-ACGGGATAGGGGGCTAATATAAGGGCCAAGTATCAGCACCCATCG
647 TGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAG
* * *
20358352 CACAACATGTGCGCACACCCACCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGATCAGG
711 CACATCATGTGCGCACA-CC-CCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCGATCAGG
* * * * *
20358417 TTCTTCGGC-ATGCCCCGACGATGGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGA
774 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * * *
20358481 GCCTAGCATGTGCTGCCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATG
839 GCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20358546 CTTAAACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * *
20358611 CGGCTAGAGGGGCGAGATGCGTAAGCCGAGGATCGGCCTGGTCCTCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
20358676 TGTTGCCATATCCCTT-GATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCACA-CCCTTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20358740 ACCGATGAAATGAACGGGTGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
195 ACCGACGAAATGAAC----GGGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
20358805 CGCAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTACATATTTCTGTGTGCCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* **
20358870 TGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATTAC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGC
* ** * *
20358935 AAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTCAAGATTTTTTTAAAA
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGA-TTTTTTAAAA
* * ** * * * *
20359000 TTTTTTTC-GAAAGAGTTTTGGCAACAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCATG
450 -TTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACG
*
20359064 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCC
514 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20359129 CCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
20359194 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAA
644 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
20359259 AGCACATCATGTGCGCACA-CCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGG
709 AGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCGATCAGG
* * *
20359323 TTGTCTGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
774 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * * * *
20359388 GCCCAGCATGTGCTGCCGTAACCCACGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
839 GCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20359453 CTTAGATTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * * *
20359518 CGG-CTGAGGGGTGGGATACGCAAGCTGGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCAATGC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * *** * * *
20359582 TGCTACCACAACCC-TC-AGTCCGGTTTGATCTTAGACTAGGAATGAACTCCATATGCCTAGGCC
131 TGCTACCAC-ACCCTTCGA-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
20359645 AACCGACGAAATG-A---GCGGGCGGGCGGGCAAGCACTACGTCGGCCATAGAGATGGGATGTGC
194 AACCGACGAAATGAACGGGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
20359706 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
20359771 CATTTTTTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
** * *
20359836 ACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTCTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* * ** *
20359901 TTCGGAAGGACTTCTT-GCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCACGCACA
454 TTCAGAAGGA-TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACA
**
20359965 AAAAAATTCAGCTAAAAACTCGGTGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20360030 TTCAGACACTTTAGTGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * **
20360095 GAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCCCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCA
* * * * * * *
20360160 CATCATGTGCGTACACCCCCCGGCCCCCCCAATCGTC-AGAACCCCAATACCGCCGGTTAGGTTC
713 CATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGA-AACCCCAATGCCGCCGATCAGGTTC
** * * ** * * ** *
20360224 TCCGATGATGCTTCGGCGATGGTGCCCTGACGAAGAAAAATACGGCACCGGCACAAGGTCGAGAC
777 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * * *
20360289 TAGCATGTGCTTCCGGAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATTGAACTCCATATG
842 TAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA-TGAACTCCGTATG
* * * * * * *
20360351 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACACATGGAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * ** * *
20360416 CGGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCGGGTCCCTCTCTGCTTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
20360481 TGTTGCTGCA-ACCTTTCG-TC-CAGTGCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TGCTAC--CACACCCTTCGATCTGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
20360543 CAACCGACG--A--AACGAGCGAGCGGACGGGCGGGCACTGCGTCGGCCAAAGTGACGGGATGCG
193 CAACCGACGAAATGAACGGGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * *
20360604 CAAGCCGTGGATCGATAGAGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * *
20360669 CCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAA
* *
20360734 GACGACTCGTTTTCTATTTCTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
388 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTT
* * *
20360799 TTTCAGAAGGATTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCATGCACA
453 TTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACA
* * *
20360864 AAAACATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20360929 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20360993 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATAGAA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCA
* * * * * *
20361058 CATCGTGTGCGCATAACATCCCCC-GACCCCTCCGATCGCCTG-ATCCCCAATGACGTCGATCAG
713 CATCATGTGCGC---ACACCCCCCGGCCCCCT-CGATCGCC-GAAACCCCAATGCCGCCGATCAG
* * * *
20361121 GTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGT-GCACCAGCACATGCTCG
773 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* * * *
20361185 AGCCTAGTATGTGCTGCTGTAACCCTTGGTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTAT
838 AGCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
20361250 G
903 G
20361251 C
1 C
20361252 CTAAGCCAAT
Statistics
Matches: 2354, Mismatches: 314, Indels: 79
0.86 0.11 0.03
Matches are distributed among these distances:
896 8 0.00
897 261 0.11
898 486 0.21
899 486 0.21
900 74 0.03
901 73 0.03
903 175 0.07
904 5 0.00
905 3 0.00
906 152 0.06
907 368 0.16
908 58 0.02
909 204 0.09
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
TGCTACCACACCCTTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAACGGGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACAT
CATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCG
GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGC
ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20359463 original size:26 final size:26
Alignment explanation
Indices: 20359427--20359482 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20359417 CTGGTCTGAT
20359427 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
20359453 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20359479 CTTA
1 CTTA
20359483 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20360799 original size:899 final size:897
Alignment explanation
Indices: 20357643--20361251 Score: 4743
Period size: 899 Copynumber: 4.0 Consensus size: 897
20357633 CCGATTCGAT
*
20357643 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGTGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * *
20357708 CGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
20357773 TGCTAT-CACAACCTTCGGTCTGGTCCGATCTTGGACTTGGAATGAACTCCGTATGCCTAA-CTC
131 TG-T-TGCACAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-C
* * * * *
20357836 AACCGACGAAACGAGCGGGCGGGCAGGCAGGCAGGCACTACGCCGGCCAGGGTGACGGGATGCAC
193 AACCGACGAAACGAGCGGGC-GG-A--CGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
20357901 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTTTACGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* **
20357966 CATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCCGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
20358031 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCTATTCAGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* *
20358096 TTTCGAAGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGAATTTTT-TTGGCACGAACAA
449 TTTCGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACAA
* *
20358160 AAAAATTCAGCTAAAAACTCCAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20358225 TCAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
20358290 AGTTCTCAAGGTTTGAT-ACGGGATAGGGGGCTAATATAAGGGCCAAGTATCAGCACCCATCGCA
644 AGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCA
* * * *
20358354 CAACATGTGCGCACACCCACCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCGATCAGGTT
708 CATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGCC-GAACCCCAATACCGCCGATCAGGTT
* * * * * *
20358419 CTTCGGC-ATGCCCCGACGATGGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
770 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * *
20358483 CTAGCATGTGCTGCCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATG
835 CTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20358546 CTTAAACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * *
20358611 CGGCTAGAGGGGCGAGATGCGTAAGCCGAGGATCGGCCTGGTCCTCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
20358676 TGTTGC-CATATCCCTTGA-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGTTGCACA-A--CCTTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
20358739 AACCGATGAAATGAACGGGTGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
193 AACCGACG--A--AAC----GAGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGAT
* * * *
20358804 GCGCAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTACATATTTCTGTGTGCCA
250 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* * **
20358869 ATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATTA
315 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** * *
20358934 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTCAAGATTTTTTTAAA
380 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGA-TTTTTTAAA
* * ** * * * *
20358999 ATTTTTTTCGAAAGAGTTTTGGCAACAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCATG
444 ATTTTTTTCGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACG
*
20359064 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCC
509 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20359129 CCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
574 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
20359194 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAA
639 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
20359259 AGCACATCATGTGCGCACA-CCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGG
704 AGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG-AACCCCAATACCGCCGATCAGG
* * * *
20359323 TTGTCTGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
768 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * * * *
20359388 GCCCAGCATGTGCTGCCGTAACCCACGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
833 GCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20359453 CTTAGATTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * * *
20359518 CGG-CTGAGGGGTGGGATACGCAAGCTGGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCAATGC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
** * *** * * *
20359582 TGCTACCACAACCCTCAGTCCGGTTTGATCTTAGACTAGGAATGAACTCCATATGCCTAGGCCAA
131 TG-TTGCACAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
20359647 CCGACGAAATGAGCGGGCGGGCGGGCAAGCACTACGTCGGCCATAGAGATGGGATGTGCAAGCCG
195 CCGACGAAACGAGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20359712 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
20359777 TTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
20359842 CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTCTAAAA-TTTTTTCGG
390 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTC-G
* ** *
20359906 AAGGACTTCTT-GCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAA
454 AAGGA-TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACAAAAAA
**
20359970 ATTCAGCTAAAAACTCGGTGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20360035 ACACTTTAGTGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * **
20360100 CTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCCCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCA
* * * * * *
20360165 TGTGCGTACACCCCCCGGCCCCCCCAATCGTCAGAACCCCAATACCGCCGGTTAGGTTCTCCGAT
713 TGTGCGCACACCCCCCGGCCCCCCCGATCG-CCGAACCCCAATACCGCCGATCAGGTTCTCCGAC
* * ** * * ** *
20360230 GATGCTTCGGCGATGGTGCCCTGACGAAGAAAAATACGGCACCGGCACAAGGTCGAGACTAGCAT
777 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCAT
* * * *
20360295 GTGCTTCCGGAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATTGAACTCCATATG
842 GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA-TGAACTCCGTATG
* * * * * * *
20360351 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACACATGGAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * ** * *
20360416 CGGCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGATCGGGTCCCTCTCTGCTTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
20360481 TGTTGCTGCAACCTTTC-GTCCAGTGCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGTTGC-ACAACC-TTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20360545 ACCGACGAAACGAGCGAGCGGACGGGCGGGCACTGCGTCGGCCAAAGTGACGGGATGCGCAAGCC
194 ACCGACGAAACGAGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20360610 GTGGATCGATAGAGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
20360675 TTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
20360740 TCGTTTTCTATTTCTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCA
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTC-
* * * *
20360804 GAAGGATTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAC
453 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACAAAAAA
* *
20360869 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
20360934 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20360998 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATAGAACATCG
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCA
* * * * *
20361063 TGTGCGCATAACATCCCCCGACCCCTCCGATCGCCTGATCCCCAATGA-CGTCGATCAGGTTCTC
713 TGTGCGC---ACACCCCCCGGCCCCCCCGATCGCC-GAACCCCAAT-ACCGCCGATCAGGTTCTC
* * *
20361127 C-AGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGT-GCACCAGCACATGCTCGAGCCT
773 CGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCT
* * * *
20361190 AGTATGTGCTGCTGTAACCCTTGGTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
20361251 C
1 C
20361252 CTAAGCCAAT
Statistics
Matches: 2357, Mismatches: 312, Indels: 77
0.86 0.11 0.03
Matches are distributed among these distances:
896 7 0.00
897 259 0.11
898 487 0.21
899 495 0.21
900 71 0.03
901 80 0.03
902 6 0.00
903 164 0.07
904 6 0.00
905 6 0.00
906 137 0.06
907 365 0.15
908 59 0.03
909 205 0.09
910 3 0.00
911 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
TGTTGCACAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTCGAA
GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCACGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGCCGAACCCCAATACCGCCGATCAGGTTCTCCGACGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGC
TGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20366231 original size:26 final size:26
Alignment explanation
Indices: 20366202--20366252 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20366192 GATCCGATCA
*
20366202 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
20366228 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
20366253 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:20367128 original size:26 final size:26
Alignment explanation
Indices: 20367092--20367144 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20367082 TCTGATCGAT
20367092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20367118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20367144 C
1 C
20367145 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20369810 original size:26 final size:26
Alignment explanation
Indices: 20369781--20369833 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20369771 CAGGTCCGAT
20369781 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20369807 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20369833 C
1 C
20369834 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20370558 original size:899 final size:898
Alignment explanation
Indices: 20365322--20373812 Score: 10635
Period size: 900 Copynumber: 9.5 Consensus size: 898
20365312 CCGGTCGGAT
* ** * *
20365322 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGCGTGCGGGGGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20365387 TAGCTGGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGCGCTGTCGATCT
66 -CGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
20365452 TGCTGCCACAACCCTCGGTCCGGTT-TGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCA
130 TGCTACCACAACCCTCGATCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20365516 ATCGACGAAATGAGCGAGCAGACGGGCGGGCGGGCACTACGTCGGCTAGAGAAACGGGATGCGCA
195 ACCGACGAAACGAGC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * ***
20365581 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTATGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
20365646 A-TTTTAGAGGCTTATAAATTCATGCGATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
321 ATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
20365710 ACGACTCGATTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTT
*
20365775 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
449 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
20365840 AAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20365905 TTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20365970 GAGTTTTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * *
20366035 CGTCATATGCGTACACCCCCTGGCTCCCCCGATCGGT-GAAACCCCAATGCCACTGGTCAGGTTC
709 CATCATGTGCGCACACCCCC-CGCCCCCCCGATC-GTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * ** *
20366099 TTCGGTGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACTAGCACATGCCCAAACC
772 TCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * * * * * *
20366164 CAGTATGTGTTCCCGCAACCCTCGATCTGATCCGATCATAGATTGGGAATGAACTCCGTATG
837 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20366226 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20366291 CGACCAGAGGGACGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
20366356 TGC-AGCCACAACCTTC-AGTCCGA-TCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGC
130 TGCTA-CCACAACCCTCGA-TCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
20366418 CAACCGACG-AA--A-CGAGCGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAG
193 CAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
20366479 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTG-ACATCTTCATATTTCTACGTGCCAATGCCA
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20366543 TTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20366608 GGCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * ** * *
20366673 TGAAAGGAGTGTGGGTCCCAAACTTTTTAGACGTGATCCTTCTATTTTTTTTGGCATGCAAAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
20366738 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20366803 CGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
20366868 TGCTCGAGGTTTGATGAGGGATAAGGGGCCAAAATAATGGCCAAGTACCAGCACCCATCGCACAA
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
20366933 CATGTGCGCAC-CCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGA
712 CATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
**
20366997 CGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CTGGAGCCCAGC
777 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGC
*
20367061 ATGTGCT-CCAGCAACCCTCGGTCTGAT-CGATCTTAGACTGGGAATGAACTCCGTATG
841 ATGTGCTGCC-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20367118 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
20367183 TGACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTTGTGCTGCCAATCC
66 CG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * *
20367248 TGCTGCCACAACCCTCGATTTG-GTCTGATCTTAGACTCGAAATGAACTCTGTATGCCTAAGCCA
130 TGCTACCACAACCCTCGATCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20367312 ACCGACGAAATGAGTG-GTCGGGCTAGCGGGCGGGCACTACGCCGGCTAGAGAGAGGGGA-GACG
195 ACCGACGAAACGAGCGAG-C-GG---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-CG
* *
20367375 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCAATG
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
20367440 CCATTTTCATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
20367505 GATGACTCGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTT
384 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
** * * * * * *
20367570 TTTTAGAAGGAGTTTTGGCCACAAACCTCGTAGACGTCATCCTTGTATTTTTTTTGGTATGCA-T
449 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
20367634 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCTAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20367699 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-T
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
20367763 CGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
644 -GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * *
20367828 ACATCATGTGCACACAGACCCCCGGCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAGGTTC
708 ACATCATGTGCGCACA-CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
20367893 T-C--C---G----G-CGATGGTGCCCCGACAAACAAAAATGCGGCACCAGCGCATGCCTGAGCC
772 TCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* ** * * *
20367947 CAGCATGTGCTGCCAC-ACCCATCGGTCCAGTCCAATCTTTGACTGGGAATGAACTTCGTATG
837 CAGCATGTGCTGCCGCAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20368009 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAG
* * * * *
20368073 TCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
65 -CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
20368138 CTGTTACCACAACCCTC-AGTCCG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CTGCTACCACAACCCTCGA-TCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
20368201 CAACCGACGAAACGAACGGGTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCG
193 CAACCGACGAAACG-A---GCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * ** *
20368266 TAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATT
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
20368331 CCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
20368396 GACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAAGTT
384 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
20368461 TTTCGGAAGGAGTTTTAGCACCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCATA
449 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
20368526 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20368591 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20368656 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTA-CAGGCACCCATCGC
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGC
* * * *
20368720 ACATCATGTGCGCACGCCCCCTTGGCCCTCCCGGTCGTCGGAACCCCAATGCCGCCGGTCAGGTT
708 ACATCATGTGCGCACACCCCC--CGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* ** **
20368785 CTCCGGTGATGCTCCGACGATGGTGCCCCAATC-AAGAAAAATGCGGCACCAGCACATGCCCAAG
771 CTCCGGCGATGCTCCGACGATGGTGCCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCTGAG
** * * *
20368849 CCCAGCATGCACTGCCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGTATGAACTCCGTATG
835 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20368913 CTTAGACTGGGAATGAACTCTC-TTTGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCGG
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** ** * * * * **
20368977 TGGGTTAGAGGGGCAAGATGCACAAGCTGGGGATC-AGTCGGGTCCCCCTCCGCGTACTGGTGAT
65 -CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
20369041 CTTGCTGCCACAGCCCTCGATCTGGA-TC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
128 CCTGCTACCACAACCCTCGATC-CGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
20369104 CCAACCGACG-AA--A-CGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
192 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
20369165 GCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCTAATACCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20369230 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
20369295 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTAAATTTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * *
20369359 CAGAAGGAGTTCTGGCCCCAAACTTAGTAGACGTGATCATTGTATTTTCTTTGGGATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
20369424 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20369489 AGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** * *
20369554 TTCTAGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTGCAACACCCATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
20369619 CATGTGCGCACACCCCCC-CAGCCCCCCTATCGTCGGAACCCCAATGTCC-CCGGTCATGTTCTT
712 CATGTGCGCACACCCCCCGC--CCCCCCGATCGTCGGAACCCCAATG-CCGCCGGTCAGGTTCTC
* * ** * *
20369682 TGGCGATGCTCTGGTGATGGTGTCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
774 CGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
* *
20369747 GCATGTGCTGCCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20369807 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCATGCAGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * * * * * * *
20369872 CGGCCCCCCGAGGCGGGTTGCACAAGCCGGAGATCGGTCGGGTCCCCCTCTGTGTACTGCCAATC
66 C-G-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
** *
20369937 CTGCTACTGCAACCCTCGATCCGATTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTACCACAACCCTCGATCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
20370001 AACCGACGAAATGAGCGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGC
194 AACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
20370066 CATGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGTTAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
20370131 TTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
20370196 CTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGAATTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
20370261 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAATAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * *
20370326 ATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20370391 ACACTTTAATTGCTACTGGAAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
**
20370456 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTACCAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * *
20370521 TGTGCGCACACCCCCCGCCCCCCCGATC-ACAGGAACCCCAATGCCATCGGTTAGGTTCTCCGAC
714 TGTGCGCACACCCCCCGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
*
20370585 GATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCT-AGCCCAGCA
778 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCTGAGCCCAGCA
* * * *
20370649 TGTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAACGAACGCTGTATG
842 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20370706 C-TAGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * * * * * * *
20370770 CCGACCAGAGCGACGGGATGCATGAGTCAGGGATCGACCGGGTCCCCCTCTGCATGCGGTCAATC
65 CCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * * *
20370835 CTATTGCTACAACCCTTTG-TCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGC
129 CTGCTACCACAACCC-TCGATCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
20370898 CAACTGACAAAACGAGC-AGACGGGCGGGCGGGCACTACGTCGGCCTA-AGAGACGGGATGCGCA
193 CAACCGACGAAACGAGCGAG-CGGGCGGGCGGGCACTACGCCGGCC-AGAGAGACGGGATGCGCA
* * * * *** ***
20370961 ACCCCTGGATTGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTATGTGCCAATAAT
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20371026 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
20371091 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *** * * * *
20371156 TCAGAAGGAATTTTGGCTATAACCTTGGTAGACATGATTCTTGTATTTTTTTTGGCATGCAAAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
20371221 AAAATT-TGACTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTT
516 AAAATTCAG-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
20371285 TAAGACACTTTAATAGCTACTGGCAACAAACCTATAAAATCTCCAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20371350 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
20371415 ATCATGTGTGCACACCCCCCCCGGCCCCCCGATCATCGAAACCCCAATGTCGTCGGTCAGGTTCT
710 ATCATGTGCGCACA--CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
20371480 CCGGCGATGCTCCGACGATGTTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCT
773 CCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* *
20371545 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
838 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20371606 CTAAGACTGGGAATGAACTCTGTACGCCTAATTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** ** *
20371671 CGACCAGAGGGGCAGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGCACTGTTGATCT
66 CG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
20371736 TGCTACCACCAACCCTCGATCTGGGTCTGATCTTAGGACTGGGAAATGAACTCCGTATGCCTAAG
130 TGCTACCA-CAACCCTCGATCCGATTCTGATCTTA-GACTGGG-AATGAACTCCGTATGCCTAAG
*
20371801 CCAACCGACG-AA--A-CGA----GCGGGC--G----A-----GCCAGAGAGACGGGATGCGTAA
192 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
20371847 GTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
20371912 TTTTTATGGCTTGTAAATTCATGCAATGGTCTCTTAAGCCTTCACGTGAAATTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * * *
20371977 AACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
**
20372042 C------------GG-------CTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
20372088 AATTTTAGCTAAAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * *
20372152 CAGACACTTTAATGGCTTTTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** ** *
20372217 ATTCTATAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTAACAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
20372282 TCTTATGCGAACACCCCCCGACCCCCTCGGATCGTCGGAACTCCAATGTCACCGGTCAGGTTCT-
711 TCATGTGCGCACACCCCCCG-CCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
20372346 C--CG--G-T-----GATAGTGCCCCGGTGAAGAAAACTACGGCACCAGCACATGCCTGAGCCCA
774 CGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
* * * * *
20372401 GCATGTGCTGTCGCAACCCTTGGTCTGATTCGATC-TAGACTGGGAATGAACTCTGTATG
839 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20372460 CTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
20372525 CGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCCTCTGCGTGCTGCCGATC
66 C-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCTCTGCGTGCTGCCGATC
* * * * *
20372590 TTGCTACCGCAACCCTC-AGT-CTAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CTGCTACCACAACCCTCGA-TCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
20372653 CAACTGAC-AAACCGAGCGGGCGGGCCGGCGGCCGGGCACTACGCCGGCCAGAGAGACGAGATGC
193 CAACCGACGAAA-CGAGCGAGCGGG-C-G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * **
20372717 GCAAGCCTTAGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTTTGCCAAT
253 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20372782 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
318 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20372847 AGATGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTGGTTCGGGATTTTTTAAAA-
383 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAAT
*
20372910 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCA
447 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * *
20372975 CAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
20373040 ATTTAAGACACTTTAGTGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGAT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
20373105 GTGAGTCCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
20373170 CACATCTTGTGCGCAAACCCTCCCGGCCCCCTCGATCGTCGGAACCCCAACGGCGCCGGTCAGGT
707 CACATCATGTGCGCACACCC-CCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
20373235 TCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAG
770 TCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAG
* * * * * *
20373300 CCCAGCATGTGCTGTCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG
835 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20373364 CTTAGACTGGGAATAAACTCCGTATGCCAAAGTCAACCCACGGAACGAGTGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * * * *
20373429 CGACCAGAAAGGCAGGATGCGCAAGCCGGAAATCAACCTGGTCACCCTCTGTGTGCTGCCGATCC
66 CG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
20373494 TGCTGCCACAACCCTC-AGTCCG-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 TGCTACCACAACCCTCGA-TCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
20373557 AACTGACAAAACGAACGAGCAGGCGGGCCGACACTACGTCGGCCAGAGAGACAGGATGCGCAAGC
194 AACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
20373622 CGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCC-TT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
20373686 TCTTATAGCTTTTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 T-TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
20373751 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTTGGTTCGGGATTTTTTAAGATTT
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTT
20373813 GTGACCATTT
Statistics
Matches: 6604, Mismatches: 810, Indels: 349
0.85 0.10 0.04
Matches are distributed among these distances:
851 31 0.00
852 7 0.00
853 10 0.00
854 125 0.02
855 99 0.01
859 1 0.00
860 2 0.00
861 2 0.00
862 2 0.00
863 3 0.00
864 7 0.00
865 7 0.00
866 250 0.04
867 1 0.00
869 1 0.00
873 9 0.00
874 188 0.03
884 1 0.00
885 196 0.03
889 4 0.00
890 63 0.01
891 471 0.07
892 668 0.10
893 161 0.02
894 207 0.03
895 639 0.10
896 412 0.06
897 16 0.00
898 578 0.09
899 790 0.12
900 819 0.12
901 60 0.01
902 11 0.00
903 187 0.03
904 565 0.09
905 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTACCACAACCCTCGATCCGATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20372465 original size:26 final size:26
Alignment explanation
Indices: 20372436--20372486 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20372426 TGATTCGATC
*
20372436 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATAAACTCTGTATGCT
*
20372462 TAGATTGGGAATAAACTCTGTATGC
1 TAGACTGGGAATAAACTCTGTATGC
20372487 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCTGTATGCT
Found at i:20373367 original size:26 final size:26
Alignment explanation
Indices: 20373338--20373390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20373328 CCGGTTCGAT
* *
20373338 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20373364 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20373390 C
1 C
20373391 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20374183 original size:26 final size:26
Alignment explanation
Indices: 20374145--20374197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20374135 CCGGTCCGAT
*
20374145 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
20374171 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
20374197 C
1 C
20374198 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:20375083 original size:26 final size:26
Alignment explanation
Indices: 20375045--20375097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20375035 CCTATCCAAT
*
20375045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20375071 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20375097 C
1 C
20375098 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20375981 original size:26 final size:26
Alignment explanation
Indices: 20375931--20375983 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20375921 CATGTTTGAT
* *
20375931 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
20375957 CTTAGACTGGGAATGAACACT-GTATG
1 CTTAGACTGGGAATGAAC-CTCGTATG
20375983 C
1 C
20375984 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCGTATG
Found at i:20376874 original size:26 final size:26
Alignment explanation
Indices: 20376838--20376890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20376828 CCGGTCTGAT
20376838 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20376864 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20376890 C
1 C
20376891 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20377370 original size:903 final size:900
Alignment explanation
Indices: 20373806--20383231 Score: 11964
Period size: 903 Copynumber: 10.5 Consensus size: 900
20373796 GGGATTTTTT
* *
20373806 AAGA-TTTGTGACCATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCA
1 AAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
20373870 AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGATTTGATGA-GGATAAGC
65 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
20373933 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGCGTACACCCCCCAGCCCCAC
130 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-C
* * *
20373998 CGATCATCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGCTCCAACGA
194 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-C--C--TG------CGA
* * * ** *
20374063 TGATGCCCCGACGAAGAAAAATGCTGCACTAGCACATGCTGGAGCCCAGCATGTGCTGTCGTAAC
248 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAC
* * * *
20374128 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCTG
313 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * ** *
20374193 TATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCCAGAGGGGTGGGACACCC
378 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * *
20374258 AAGCCGAGGATCGGTCGGGTCTCCTTCTATGTGCTACCGATCCTGCTGCCACAACCTTCGGT-TC
443 AAGCCGGGGATCGATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-
* * * *
20374322 GATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGA---GCGGGC
507 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGCGGGC
* * * * *
20374384 GGGCGGGCGGCCACTACGCAGTCCAGTGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
572 GGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
20374449 GGTCTGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCAT
636 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * **
20374513 ACAATGGTCCTTTAATCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATA
701 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
20374578 ATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAT
766 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
20374643 CTTGATAGACGTGATCCTTGTATTTTTGTTGGCAGGCACAAAAAAAATCAGCTAAAAACGT-GAA
831 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAA
20374707 GTGTAC
895 GTGTAC
* **
20374713 AAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTTGGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
20374778 ACCAGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
20374843 GCCAATATAAGGGACAAGTACCACCACCCATCGCACATCATGTGTGCACACCCCCCCCGGCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-CCCC
* * *
20374908 CCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCC
193 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTG-CGATGGTGCCCC
* **
20374972 AACGAAGAAAAATGTC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
257 GACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTC
** ** * *
20375036 CTATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTA
321 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
20375101 AGTGAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGTGGGATGCGCAAGTCGGG
386 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
20375166 GATCGACCGGGTCCCCTTCTGCCTGCTATCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATC
451 GATCGATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* * *
20375231 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACCAAACGAGT---GGGCAGGCGGGCG
516 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGCGGGC-GGGGGGCG
* * * * *
20375293 GCCACTACGCCGACTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTT
580 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
20375358 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
645 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
20375423 CCTTAATCCTTCACATGAAGTGTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
710 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
20375488 AC---TTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
775 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
20375550 CGTGATCCTTGTATTTCTTTTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTAC
840 CGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
20375612 AAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCA
* * *
20375676 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGGGTTCTTGAGGTTTGATGAGGGATAGGG
65 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
20375741 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCTCCC
130 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCC
* * * * * * * * *
20375806 CAATTGTCAGAACCTCAATGCTGTTGGTCAGGTTCT-C--CG--G----T--GATTGTCCCCCGG
194 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGA
* * * * **
20375860 TGAAGAAAAATGCGGCACC-GACACATGCTCGAACCCAGCATGTGCTGCCGCAACCCTCGGTCAT
259 CGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * * * *
20375924 GTTTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACACTGTATGCCTAAG
323 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
20375989 TCAACCCACGAAACGAGTGTGTGGGCGCTCAGCCGACTAGAGGGCCGGGATGCGCAAGTCGGGGA
388 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
20376054 TCGGTCGGGTCCTCC-TCTATGTGCTGCCGATCATGCTACTGCAACCCTCGATCTGATCTGATCT
453 TCGATCGGGTCC-CCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* *
20376118 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGCGGGCGGGCGGGTG
517 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---G-TGGCGGGCGGG-G
* * * * *
20376183 GGTGGGCTCTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGG
576 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
20376248 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCCTGTAAATTCATATAAT
641 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20376313 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
706 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
20376378 TAAAACTTTTTGCGGTTTGGGATGTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
771 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
20376443 TAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
836 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
20376508 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
20376573 ACTTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
20376638 GCCAATATAAGGGCCATGTACCAGCACCCATCGCATATCATGTGCTCACACCCCCCCGCCCCCTC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-C
* * * * * * *
20376703 GATTGCCGGAACCCCAAGGCCGTCGGTCAGGTTCTTCGGCAATGCTCATGCGATGGTGCCCCGAC
195 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGAC
* * * * ** * * *
20376768 AAAGAAAAATACGACACCGGCACATGCCTAAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGGT
260 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* * *
20376833 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGATTGAACTCCGTATGCCTAGGTC
325 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * *
20376898 AACCCACGAAATGAGCATGCGGGCACTCATTCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATA
390 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * * *
20376963 GGTCAGATCCCCTTCTACGTACTACTGATCCTGCTACCGTAACCCTCGATCTGGTCTGATGTTAG
455 GATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
* * * * * * *
20377028 ACAGGGAATAAACTCCATTTGCCTAAGTCAATCGACGAAACGAGTGGACGGGCGGGTGTGCGGGC
520 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGG-CGGGCGGG-GGGCGGGC
* * *
20377093 ACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * * *
20377158 CAGATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCATGTAAAATCATACAATGGTACGT
648 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * ** * *
20377223 TAGGCCGTCACGTGATGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCATGATTTTTGAAACA
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
20377288 TTTTGCGGTTAGGGATTTTTTTAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGACGT
778 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
20377353 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
843 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
20377411 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
20377476 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
20377541 GCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATAATATATGCACATACCCCCCGGCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT--CATGTGCGCACACCCCCCGGCCCCC
* * * * * *
20377606 TCGATCGTCGAAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCTACAATGGTGCCTCG
194 -CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCG
** * * * * * * *
20377671 GTGAGGAAAAATACGGCACCAGCACGTGCGCGAGCCCAGCATGTGATGCCGTAACCCTTGGTCTG
258 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * * *
20377736 GTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGATTGGGAATGAACTCCGTCTCCCTAAG
323 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
20377801 TCAACCCACGAAACGAGTGTGCAGGCGCTTAGCCGGCCAGAGGGACGGGATGCGCAAGCCGAGGA
388 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * * * * **
20377866 TCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGCCACAACCATCAGTCTGGTCTGGCCTT
453 TCGATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
* * * *
20377931 AGACTGGGAATGAACTTCTTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGGGGACTG
518 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGCGGGCGGGGGG-CGG
* *
20377996 GCACTACGCCGGCCAGAGAGACGGAATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
581 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
20378061 GGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
646 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
20378126 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTGAAA
711 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * *
20378191 CTTTATGCTGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGTCCCCAAACTTGGTAGAC
776 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
20378256 GTGATCCTTGTATTTTTTTTAGCATGCTCAAAAAAATTCATCTAAAAACTCGAAGTGTAC
841 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
**
20378316 AAGATTTTGTGATGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
20378381 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGAGAGTTCTCAAGGTTTGATAAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
20378446 GCCAATATGAGGGCCAAGTAACAGCACCCATCGCACATTATGTGCGCACAGCCCCCCGGCTCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * * **
20378511 AATCGTCGAAACCCCAATGCCGTCGGTCA---------A-AAT-CTCCGGTGATGGTGCCCCGGT
195 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGAC
* * * *
20378565 GAAGAAAAATACGGCACCACCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGT
260 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
*
20378630 CTGATCTTAG-CT-----T--A----G---G---A-A-T--GAAT---CT-CGTCTGCCTAAGTC
325 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
20378669 AACCCACGGAACGAGCGTGCGGGCGCTCAGCCAGCCAGAAGGGCGGGATGGGCAAGCCAGGGATT
390 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
20378734 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAAACCTTGGTCTGGTC-CATTCTTA
455 GATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA-TCTTA
* * * *
20378798 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAAAGAGTTGGCGGGC---GGGCAGGC
519 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGCGGGCGGGGGGCGGGC
* * * *
20378860 ACTAC-CTTGGCCAGAGAGACGAGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
583 ACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * ** * * *
20378924 GCACATCATCATATTTCTACTTGAAAATACCACTTTTATGGCTTGTAAATTCATACAATGATCCC
647 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
20378989 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAAC
712 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * ** * * * * *
20379054 TTTTTACAGTTTGACATTTTTTAAATTTTTTTTGAAATGATTTTTGGCCCCAAACTTGGTAGACG
777 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
20379119 TGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTAC
842 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20379178 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
20379243 ACCTATAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
20379308 TCCAATCTAAGGGCCAAGTACCAGCACCCATCACACAACATGTGCGC-CACCCCCCGACCCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCC
* ** * * *
20379372 GATCGTCGGAACCCCACTGCCACCGGTTAGATTCTCCGAC-A----------ATGGTACCCCGAC
195 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGAC
* * *
20379426 AAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
260 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* * * *
20379491 CTGATCTTAGATTAGGAATGAACTTCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
325 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * *
20379556 AACCAACGAAACGAGCGTGCGGGCACTCAGCAGTCCAGAGGGTTGGGATGCGTAAGCCGAGGATC
390 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * *
20379621 GATCGGGTCCCCCTCTGCGTGCTCCCGATCCTACTGCCGCAACCCTCGGT-TCGGTCTGATGTTA
455 GATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTA
* *
20379685 GACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGA---GCGGACGGGTGGGCGGGC
519 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGCGGGCGGG-GGGCGGGC
* * * *
20379747 ACTACGCCGACCTGAGAGACGGGATGCGCAAG-CGTGTATCGATAAGGTGGTAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
20379811 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
648 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
20379876 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
20379941 TTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGTCCCCAAACTTGATAGACAT
778 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
20380006 GATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATTCATCTAAAAACTCGAAGTGTAC
843 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20380064 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
20380129 ACCTGTAAAATCTGAAATGCTCTTTAAGAGGGTGTGAATTTTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
20380194 GCCAATATAAGGGCTAAGTACCAGCACCCATCACACATCAAGTGCGCACACCCTCCCGGTCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGG-CCCCC
* * * * *
20380259 CAATCG-CTGGAACCCCAATGTCGTAC-GTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCC
194 CGATCGTC-GGAACCCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCC
* * * * ** *
20380322 GACGAAGAAAAATGCCGCACCAGCAAATGCCCAAGCCCAGTATGTGCTATCGTAACCCTCGGTCT
257 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
20380387 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
322 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
20380452 GTCAACCCACGAAATGAGCATGCGGGTGCTCAACCGGCCAGAGGGGTGTGATGCGCAAGCCGAGG
387 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * **
20380517 ATCAACCAGATCCCCTTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCGGTCCAGT-TCGATC
452 ATCGATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATC
* * *
20380581 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGTGGACGGGC---GGGCG
516 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGG-CGGGCGGGGGGCG
* *
20380643 GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGAGTGGTAGGTGGG-TT
580 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
20380707 AGGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
645 A-GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
20380772 CCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTTTTTTTTTCACGATTTTTGA
709 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
20380837 AACTTTTTGCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGACCCCAAACTTGGTAG
774 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
20380902 ACATGATCCTTGTAGTTTTT-TTGGCACGCA-AAAAAATATTCAGCTAAAAACTCGGAGCGTAC
839 ACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTAC
20380964 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
20381029 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
20381094 GCCAATATAAGGGCCAAGTACCAGCACCCTTCACACATCATGTGCGCACA--------CCCCCCG
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * *
20381151 ATCGCCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGACGCTCCGGCGATGGTGCCCCGACG
196 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGACG
* * * * *
20381216 GAGAAAAATGTGGCACCAGCACATGCTCGAGCCAAGCATGTGCTGCCGTAACCCTCGGTCTGGTC
261 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
* * *
20381281 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
326 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
20381346 ACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGGGATGCGCAAGCCGAGAATCG
391 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * * ** * *
20381411 GCCGGGTCCCCCTCTGCAAGCTACCGATCCTGCTGCCGTAACCCAT-GGT-TCGGT-TCAATCTT
456 ATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCC-TCGGTCT-GGTCT-GATCTT
* * *
20381473 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCAG
518 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGCGGGCGGG-GGGCGG
* ** * *
20381538 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCAAGGATTGATAAGGTGGTAGGTGGGTTTA
581 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20381603 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTGGTAAATTCATACAACGGTCC
646 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20381668 CTTAAGCCTGCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTT-ACGATTTTTGAA
711 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTTGAA
* *
20381732 ACTTTTTGCGGTTTGGGA-TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA
775 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* **
20381796 CGTGATCCTTGTAGTTTTGTTGGCATGCA-AAAAAATATTCAGCTAAAAACTCGAAGCATAC
840 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTAC
* * * *
20381857 AAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGACAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * **
20381922 ACCTGCAAAATCTGAAATG-TATTTTAAAAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 ACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
20381986 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCC
130 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* * * * *
20382051 TCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTTTCCGACGATGCTCCGGTGATGGTGCCCCG
194 -CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCG
* * ** *
20382116 ATGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGCCGTAACCCTCTTTCCT
258 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * *
20382181 GTCCGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAAC-CCTGTATGCCTAA
323 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-GTATGCCTAA
* ** * * *
20382245 GTCAACCCACGAAATGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAGGCCGGAG
387 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** * * * * *
20382310 ATCGACCGGGTCCCCCTT-TGTGTGCTGCCAATCCTGTTGCCGCAACCCTTGGTCTGGTCTGGTC
452 ATCGATCGGGT-CCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* * * *
20382374 TTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGCGGGC
516 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGG-CGGGCGGG-GGGC
* * * *
20382439 TGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTT
579 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
20382504 TAGGCACATCTTCATATCTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
644 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
20382569 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGA
709 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * * **
20382634 AACTTTTTACGATTTGGGATTTTTAAAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACATCCTA
774 AACTTTTTGCGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
20382698 GATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
838 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20382761 AAGATTTCGTGACCATTTG--AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
20382824 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
20382889 GCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCTTCGGCTCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC-CCGGC-CCC
* * **
20382954 CCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTTTCCGGTGATGCT-CTGGCGATGGTGCCCC
193 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCT-GCGATGGTGCCCC
* * *
20383018 GACGAAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
257 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
* * *
20383083 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
322 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * * *
20383148 GTTAGCCCACGAAACGAATGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGTAAGCTGGGG
387 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
*
20383213 ATCGGTCGGGTCCCCTTCT
452 ATCGATCGGGTCCCCTTCT
20383232 GCCTGCATAC
Statistics
Matches: 7448, Mismatches: 906, Indels: 334
0.86 0.10 0.04
Matches are distributed among these distances:
860 7 0.00
861 109 0.01
862 448 0.06
863 3 0.00
866 164 0.02
867 3 0.00
869 1 0.00
870 6 0.00
872 1 0.00
873 2 0.00
874 1 0.00
876 1 0.00
879 1 0.00
880 2 0.00
881 1 0.00
883 9 0.00
884 1 0.00
885 2 0.00
886 687 0.09
887 199 0.03
888 40 0.01
889 3 0.00
890 334 0.04
891 6 0.00
892 88 0.01
893 265 0.04
894 377 0.05
895 11 0.00
896 251 0.03
897 112 0.02
898 74 0.01
899 521 0.07
900 795 0.11
901 101 0.01
902 174 0.02
903 1257 0.17
904 122 0.02
905 792 0.11
906 5 0.00
907 331 0.04
908 36 0.00
909 51 0.01
910 1 0.00
911 49 0.01
912 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCTTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGCGGGCGGGGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
Found at i:20379548 original size:26 final size:26
Alignment explanation
Indices: 20379496--20379548 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20379486 CCGGTCTGAT
* *
20379496 CTTAGATTAGGAATGAACTTCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
20379522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
20379548 C
1 C
20379549 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:20380431 original size:26 final size:26
Alignment explanation
Indices: 20380395--20380447 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20380385 CTGGTCTGAT
20380395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20380421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20380447 C
1 C
20380448 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20381314 original size:26 final size:26
Alignment explanation
Indices: 20381285--20381337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20381275 CTGGTCCGAT
*
20381285 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20381311 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20381337 C
1 C
20381338 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20383129 original size:26 final size:26
Alignment explanation
Indices: 20383091--20383143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20383081 CCGGTCCGAT
20383091 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20383117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20383143 C
1 C
20383144 CTAAGTTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20384301 original size:26 final size:26
Alignment explanation
Indices: 20384263--20384315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20384253 CCGGTCCGAT
*
20384263 CTTAGCCTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20384289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20384315 C
1 C
20384316 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20385168 original size:26 final size:26
Alignment explanation
Indices: 20385132--20385184 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20385122 CCAATCCAAT
20385132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20385158 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20385184 C
1 C
20385185 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20386046 original size:26 final size:26
Alignment explanation
Indices: 20386017--20386069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20386007 TCGGTCTGAT
*
20386017 CTTAGACTACGAATGAACTCTGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
20386043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
20386069 C
1 C
20386070 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:20386238 original size:26 final size:26
Alignment explanation
Indices: 20386202--20386254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20386192 CCGATTTGAT
*
20386202 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
20386228 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
20386254 C
1 C
20386255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:20386307 original size:185 final size:185
Alignment explanation
Indices: 20385993--20386413 Score: 574
Period size: 185 Copynumber: 2.3 Consensus size: 185
20385983 GCATGTGGTA
* * * ** * *
20385993 CCGCAACCCTCAGTTCGGTCTGATCTTAGACTACGAATGAACTCTGTATGCTTAGACTGGGAATG
1 CCGCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATG
* * * * *
20386058 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGACACTCAGCCGGCCAGAGGGGCGG
* * * ** *
20386123 GATGCGTAAGCCGGGGATC-GATCGGGTCCTCCTCTTTGTGCTGTTAATCCTGTTG
131 GATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
* * * *
20386178 CTGCAACCCTTTGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTACACTGGGAATG
1 CCGCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATG
*
20386243 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGCACTCAGCCGGCCAGAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGACACTCAGCCGGCCAGAGGGGCGG
* *
20386308 GATGCGCAAGCCGGGGTTCGGACGGGTCCCCCTCTATGTGCTGCCAATCTTGCTG
131 GATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
* * *
20386363 CCGTAACCCTTAGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGC
1 CCGCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
20386414 CTAAGCCAAC
Statistics
Matches: 203, Mismatches: 32, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
185 201 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (185 bp):
CCGCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGACACTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTATGTGCTGCCAATCCTGCTG
Found at i:20387124 original size:26 final size:26
Alignment explanation
Indices: 20387095--20387147 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20387085 TCGATCCGAT
20387095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20387121 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20387147 C
1 C
20387148 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20388016 original size:26 final size:26
Alignment explanation
Indices: 20387987--20388039 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20387977 CTGGTCCGAT
20387987 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
20388013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20388039 C
1 C
20388040 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20388149 original size:892 final size:884
Alignment explanation
Indices: 20386199--20388150 Score: 2694
Period size: 892 Copynumber: 2.2 Consensus size: 884
20386189 TGTCCGATTT
* *
20386199 GATCTTAGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
20386264 CCCACGAAACGAACATACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGTTCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATC-G
* * *
20386329 A-CGGGTCCCCCTCTATGTGCTGCCAATCTTGCTGCCGTAACCCTTAGTCTGATCTAATCTTAGA
129 ATCGGGTCCCCCTCTATGTGCTGCCAATCTTGCTGCTGTAACCCTCAGTCTGATCCAATCTTAGA
*
20386393 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGACGGGCACTACGCTG
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGACGGGCACTACGCCG
* *
20386458 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTC
259 GCCAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTC
* *
20386523 ATATTTCTATCTGCCAATGCCATTTTTGTGGCTTGTAAATTCGTACAACGGTCCCTCAAGCCTTC
324 ATATTTCTAGCTGCCAATGCCATTTTTATGGCTTGT-AA-T--T---A-GGTCCCTCAAGCCTTC
* *
20386588 ACATGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCTGGATTTTTAAAACTTTTTACGGT
381 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTGGATTTTTAAAACCTTTTACGGT
* * * * *
20386653 TTGGGATTTTTTAAAATTTTTTGGGAATGGGTTTTGCCCCAAGCATGGCTGGCGTGGTCCTTTTT
446 TTGGGATTTTTTAAAATTTGTTCGGAATGGGTTTTGCCCCAAACATGGCTGACGTGATCCTTTTT
* * *
20386718 TTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGGCCATT
511 TTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATT
20386783 TGAAAAAACGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
576 TGAAAAAACGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
20386848 TCCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
641 GCCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
20386913 CACCAGCACCCATTGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATTGCCGGAACCCCAAT
706 CACCAGCACCCATTGCACATCATGTGCGCACACCCCCCAGACCCCCCGATCGCCGGAACCCCAAT
* * *
20386978 GTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACC
771 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGAGGCACC
* * * * *
20387043 AGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCCTCGGTTCGATCC
836 AGCACATCCCCGAACCCAGCATGTGCTATCACAACCCTCAGTTCGATCC
20387092 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
20387157 CCCATGAAATGAGCGAGCGGGCGCTCAGCCGGCCAGGGGGGCGGGATGCACAATACGGGGATC-A
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-GCGGGGATCGA
* ** * * * *
20387221 TTCGGGTCACCCTCCGTGTGCTGCCGATCTTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAGA
130 -TCGGGTCCCCCTCTATGTGCTGCCAATCTTGCTGCTGTAACCCTCAGTCTGATCCAATCTTAGA
*
20387286 CT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGACGGGCGGGCGGGCGGGCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA--A-C-GA---GCGGGCGGACGGGCA
* * * * *
20387350 CTATGCCGGCTAGAGAGACAGGATGCGCAAGCCGTAGATCGCTGGGGTGGTAGGTGGGTTTAGGC
251 CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGTGGGTTTAGGC
*
20387415 ACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGT-A-T-GGTCCCTTAAGCCTT
316 ACATCTTCATATTTCTAGC-TGCCAATGCCATTTTTATGGCTTGTAATTAGGTCCCTCAAGCCTT
* * * **
20387476 CACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAT-GATTTTTGAAACCTTTTGGG
380 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TGGATTTTTAAAACCTTTTACG
*
20387540 GTTTGGGATTTTTTAAAATTTGTTCGGAA-GGAGTTTTGGCCCCAAACTTGG-TAGACGTGATCC
444 GTTTGGGATTTTTTAAAATTTGTTCGGAATGG-GTTTT-GCCCCAAACATGGCT-GACGTGATCC
*
20387603 TTGTATTTTTTT-CTGGCATGCACAAAAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGT
506 TT-T-TTTTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
20387667 GGCCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
569 GGCCATTTGAAAAAA-CGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
20387732 TCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATA
633 TCTCAAATGCCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
* * *
20387796 ATGGCCAAGTACCAGCACCCATCT-CACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCCG
697 AGGGCCAAGCACCAGCACCCAT-TGCACATCATGTGCGCACACCCCCCAGACCCCCCGATCGCCG
* * * **
20387860 GAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAA
761 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAAA
* * *
20387925 ATGCA-GCACCAGCACATCCCCGAACCCTGCATGTGCTGTCACAACCCTCAG-TCTGGTCC
826 ATG-AGGCACCAGCACATCCCCGAACCCAGCATGTGCTATCACAACCCTCAGTTC-GATCC
* *
20387984 GATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
20388049 CCCACGGAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGCTTGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGA
* * *
20388114 TCGAGTCCCCCTCTACGTGCT-CTCAATCCTGCTGCTG
130 TCGGGTCCCCCTCTATGTGCTGC-CAATCTTGCTGCTG
20388151 CNNNNNNNNN
Statistics
Matches: 935, Mismatches: 98, Indels: 53
0.86 0.09 0.05
Matches are distributed among these distances:
888 2 0.00
889 102 0.11
890 22 0.02
891 71 0.08
892 446 0.48
893 174 0.19
894 1 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 111 0.12
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (884 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGAT
CGGGTCCCCCTCTATGTGCTGCCAATCTTGCTGCTGTAACCCTCAGTCTGATCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGACGGGCACTACGCCGGC
CAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTAGCTGCCAATGCCATTTTTATGGCTTGTAATTAGGTCCCTCAAGCCTTCACATGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCTGGATTTTTAAAACCTTTTACGGTTTGGGATTTT
TTAAAATTTGTTCGGAATGGGTTTTGCCCCAAACATGGCTGACGTGATCCTTTTTTTTTTGCTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAACG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACC
CATTGCACATCATGTGCGCACACCCCCCAGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
AGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATCCC
CGAACCCAGCATGTGCTATCACAACCCTCAGTTCGATCC
Found at i:20393116 original size:26 final size:26
Alignment explanation
Indices: 20393080--20393132 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20393070 CCAATCCAAT
*
20393080 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20393106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20393132 C
1 C
20393133 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20394007 original size:26 final size:26
Alignment explanation
Indices: 20393978--20394030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20393968 CCGGTTTGAT
*
20393978 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20394004 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20394030 C
1 C
20394031 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20394645 original size:892 final size:892
Alignment explanation
Indices: 20391476--20395385 Score: 4822
Period size: 907 Copynumber: 4.4 Consensus size: 892
20391466 ACTCTGTATG
* * ** * * * *
20391476 CTTAGACAGGGAATGAACACCATATGCCTCAGTCAACCCACGAAACGAGCAGAT----GGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGGG
* * * *
20391537 CGGGCACTATGCCGGCCAGAGAAACAGGATGCGCATGCCATGGATCAATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
20391602 CTAGACACATCTTCATATTTCTGTTTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTG-TTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * **
20391667 TCCCTTAAGCCTTCACGTGGAGTCTCATGGCAAGATGACTTGTTTTCTATTTTCCAACATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
20391732 AAACTTTTTACGGTTCGAGACTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTA
260 AAACTTTTT--GGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTA
*
20391797 GACGTGATCCTTGTATTTTTGTTGG-ATGCACAAAAAAATTCAGGCT--AAACTC-ATAGTGT--
323 GACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGA-AGTGTAC
* *
20391856 -A-ATTTTGTG-CCA-TTGAAAAAAAGGGTCCCCATTTCAGACACTTTAATGGGCTACTGGCAGC
386 AAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGAAGC
* *
20391917 AAACACCTGTAAAATCTC-AATGCTCTTTAAGGGGGGTGTGAGTTCC-C-AGGTTTGATGAGGGA
449 -AA-ACCTGTAAAATCGCAAATGCTCTTTAA-GGGGGTGTGAG-TCCTCGAGATTTGATGAGGGA
** * *
20391979 TA-GGGGCCAA-ATAAGGGCCAAGTGCCACCACCCATCCGCACATCGTGTGCGCACACCCCCTCG
510 TAGGGGGCCAATATAAGGGCCAAGTTACAGCACCCAT-CGCACATCATGTGCGCACA--------
* * * *
20392042 GCCCCCCCGATC-CCGGAACCCCAATGCCGCCACCGGTTAGGTTCTCTGACGATGCTCCGGCGAT
566 -CCCCCCCGATCATCGGAACCCCAAT---GCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * * **
20392106 GGTGCCCCCGACGAGAAAAA-TGCGGCACCAGCACATG-CCGAGCCCAGGCATGTGCTGCGGCAA
627 GGTG-CCCCGACGAGAAAAATTACGACACCAGCACATGCCCAAGCCCA-GCATGTGCTGCCACAA
** * *
20392169 CCCCCGGT-CATGGTAT-CGATCTTAGA-TTGGAATG-ACT-CGTATTGCTTAGACTGGGAATGA
690 CCATCGGTCCA----ATCCAATCTTAGACTGGGAATGAACTCCGTA-TGCTTAGACTGGGAATGA
* ** * * *
20392229 A-TCCGTATGGCC-AAGTCAACCCATGAAACGAGAGTGCGGGCACTCAGCCGGCCAGAGGGGCGA
750 ACTCCGTAT-GCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAAAGGGGCAA
* * * * * *
20392292 GATGCGCAAGCTGGGGATCGATCTGGTCACCCTCTACGTACTGCCGATCCTGCTACCGCAACCCT
814 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTGCCAATCCTGCTACCGCAACCCT
* * *
20392357 CAGTCCGGTCCGAT
879 CGGTCCAGTCCAAT
*
20392371 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--AT------GCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGGG
* * *
20392428 CGAGCACTACGTCGGCCAGAGAGAC-GAGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTGGG
66 CGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
*
20392492 TTTAGGCACATCTTTATATTTCTACG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 TTTAGGCACATCTTCATATTTCT--GTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
20392556 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
193 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
** *** *
20392621 CAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGACAA-GAGTTTTCATCCCAAACTTG
258 TGAAACTTTTT--GGTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACATG
* * ** * * *
20392685 GTAGACGTGAACCTTGCATTTTT-TTGGGTTGTACAAAAAAATTGAGCTAAAAACTTGAAGTGTA
320 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
20392749 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTAGAAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCA
*
20392814 AACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGG
450 AACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGATTTGATGAGGGATAGGG
*
20392879 GGCCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC
515 GGCCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGCGCACA--------CCCCCC
* * * * *
20392944 CGATCGTCGGAACCGCAATGCCACCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGG
572 CGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * **
20393009 TGAGAAAAATTATGACACCAGCACATGCTTAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAA
637 CGAGAAAAATTACGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAA
* *
20393074 TCCAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGT
702 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
20393139 CAACCCACGAAACGAGCCTGCGGGCGCTTAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGAT
767 CAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGAT
* ** *
20393204 CGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGCTACCGCAATGCTCGGTCCAGTCTAAT
832 CGATCGGGTCCCCCTCTACATGCTGCCAATCCTGCTACCGCAACCCTCGGTCCAGTCCAAT
*
20393265 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGC-G-
* * * * * * *
20393330 CAGGTGGGCACTACACCGACCAGAGAGACGGGATACGCAAGCTATGGATCGATAGGGTGTTAGGT
64 --GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
*
20393395 GGGTTTAGGCACGTCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTG-TTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
20393460 ATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
* * * * * **
20393525 TTCGAAACTTTTTGCTATTTAGGATTTTTTAAAATTTTTACGCAAGGAGTTTTCACCCCAAACAT
256 TTTGAAACTTTTTG--GTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACAT
*
20393590 GGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
319 GGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
20393655 ACAAGATTTTATGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGC
* * * *
20393720 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTCCTCGAGGTTTGATGACGGATAGG
449 AAACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGATTTGATGAGGGATAGG
*
20393785 GGGCCAATATAAGGGCCAAG-TACCAGCACGCATCGCACATCATGTGCGCACA-CCCCCCGATCA
514 GGGCCAATATAAGGGCCAAGTTA-CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCA
* * * * *
20393848 TCGGAACCCTAGTGCTACCGGTCAGGTTCTCCGGCGATGCTCCGGCGCTGGTGCCCCAACGAAGA
578 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG-AGA
* * * * * ** * ** ***
20393913 AAAA-TGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTTCTGCAACCCTCGGTCCGGTTTGA
642 AAAATTACGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAATCCAA
* *
20393977 TCTTAGACTGGGTATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
707 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *** ** * ** *
20394042 CACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATAAGCAAGTCGGCAATCGACC
772 CACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGATC
*** * * * * * * *
20394107 GGGTCCCCCT-TGTGTGCTGTCAATCCTGTTGCCGCTACCCT-GAATCCGGTCCGAT
837 GGGTCCCCCTCTACATGCTGCCAATCCTGCTACCGCAACCCTCG-GTCCAGTCCAAT
* *
20394162 CATAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGG
*
20394226 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* **
20394291 TTTAGGAACATCTTCATATTTCTGTATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
20394356 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT
*
20394421 GAAACTTTTGTGGTTTGGGATTTTTTAAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGT
259 GAAACTTTT-TGGTTTGGGATTTTTT-AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGT
* *
20394485 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGCGTACA
322 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
20394550 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGAAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAA
*
20394615 CCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGG
452 CCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGATTTGATGAGGGATAGGGGG
*
20394680 CCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCC
517 CCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGCGCACA---------CCCCCCC
* * * * * **
20394745 GATCGTCGGAATCGCAATGCCACCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGGT
573 GATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* **
20394810 GAGAAAAATTATGACACCAGCACATGCTTAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAAT
638 GAGAAAAATTACGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAAT
* *
20394875 CCAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTC
703 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
20394940 AACCCACGAAACGAGCCTGCGGGCGCTTAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATC
768 AACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATC
* * ** *
20395005 GGTCGGGTCCCCCTCTACATGCTGCCAATCCTGCTACCACAATGCTCGGTCCAGTCTAAT
833 GATCGGGTCCCCCTCTACATGCTGCCAATCCTGCTACCGCAACCCTCGGTCCAGTCCAAT
* *
20395065 CTTAGATTGGGAATGAACTCTGTATGCCAAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGC-G-
* * * * * * *
20395130 CAGGTGGGCACTACACCGACCAGAGAGACGGGATACGCAAGCTATGGATCGATAGGGTGTTAGGT
64 --GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
*
20395195 GGGTTTAGGCACGTCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTG-TTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
20395260 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
* * *
20395325 TTTGAAACTTTTTGTGGTTCGGGA-TTTTTAAAACTTTTTTCGGAAGGAGTTTTGGTCCCAA
256 TTTGAAAC-TTTT-TGGTTTGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAA
20395386 GTACCAGCAC
Statistics
Matches: 2615, Mismatches: 322, Indels: 143
0.85 0.10 0.05
Matches are distributed among these distances:
890 10 0.00
891 270 0.10
892 294 0.11
893 298 0.11
894 203 0.08
895 93 0.04
896 58 0.02
897 142 0.05
898 229 0.09
899 7 0.00
901 7 0.00
902 227 0.09
903 86 0.03
904 5 0.00
905 2 0.00
906 254 0.10
907 397 0.15
908 33 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGAC
GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
TAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGATTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCATCGGAACC
CCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAGAAAAATTACG
ACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCATCGGTCCAATCCAATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCCTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
TCTACATGCTGCCAATCCTGCTACCGCAACCCTCGGTCCAGTCCAAT
Found at i:20394916 original size:26 final size:26
Alignment explanation
Indices: 20394880--20394932 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20394870 CCAATCCAAT
*
20394880 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20394906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20394932 C
1 C
20394933 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20396495 original size:26 final size:27
Alignment explanation
Indices: 20396443--20396495 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
20396433 CCGATCCCAT
*
20396443 CTTAGACTGGGAATGAAACTCTGTATG
1 CTTAGACTGGGAATGAAACTCTATATG
20396470 CTTAGACTGGGAATG-AACTCTATATG
1 CTTAGACTGGGAATGAAACTCTATATG
20396496 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCTATATG
Found at i:20398311 original size:26 final size:27
Alignment explanation
Indices: 20398259--20398311 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
20398249 CTGATCCCAT
*
20398259 CTTAGACTGGGAATGAAACTCTGTATG
1 CTTAGACTGGGAATGAAACTCTATATG
20398286 CTTAGACTGGGAATG-AACTCTATATG
1 CTTAGACTGGGAATGAAACTCTATATG
20398312 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCTATATG
Found at i:20398944 original size:914 final size:907
Alignment explanation
Indices: 20395649--20399134 Score: 5237
Period size: 914 Copynumber: 3.8 Consensus size: 907
20395639 ACGAGCGTGC
* * * * * * *
20395649 GCAAGCCGGGGATCGGCCGGGTCCTCTTCTGCGTGCTGTCGATCCTACTATCGTAAACCTCGATC
1 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGTCGGAACCCTCGATC
* * * * * * *
20395714 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACTGACGAAA-CAAGCAGGCG
66 CGGTCTAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAA-CGGGCG
* * * * * ** * * *
20395778 GGCG--GGCGGGTGGGCGGGCACTACGCTGGCCAGAGAGATAGGATGCGCAAGTCATGGATCGAT
130 GGCGCAGGCGAGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGATCGAT
20395841 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
195 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
*
20395906 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
260 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
20395971 TTTTTCACGATTTTTGAAACTTTTGTGGTTTGGGATTTTTTAAAAATTTTTTGAAAGGAGTTTTG
325 TTTTTCACGATTTTTGAAACTTTTGTGGTTCGGGATTTTTTAAAAATTTTTTGAAAGGAGTTTTG
20396036 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAA
390 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAA
20396101 ACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
455 ACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
20396166 CTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
520 CTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
20396231 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
585 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
**
20396296 CCCCACCCCCCCGATCGCCGGAACCCTAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGACGA
650 CCCCACCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
20396361 TGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTGCCACAAC
715 TGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTGCCACAAC
20396426 CCTTGGTCCGATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCT
780 CCTTGGTCCGATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCT
*
20396491 ATATGTCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTCAGCCGGCCAAAGGGGAGGGATGA
845 ATATGTCTAAGTCAACCCATGAAA-GAGCGTTCGGGCACTCAGCCGGCCAAAGGGGAGGGATGA
*
20396555 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTGCTGTCGGAACCCTCGATC
1 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGTCGGAACCCTCGATC
* * *
20396620 CGGTCTGATCTTAGAGTGGGAAAGAACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCGG
66 CGGTCTAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGG
20396685 GCAAGCAGGCGAGCGGGCGGGTTGGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGA
131 GC--GCAGGCGAGCGGGC--G--GGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGA
** *
20396750 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGACAATGCCATTTTTATG
190 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* * * *
20396815 GCTTGCAAATTCATACAATGTTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGACGACTCGTT
255 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20396880 TTCTATTTTTCATGATTTTTGAAACTTTTTATAGTTCGGTATTTTTT-AAAATTTTTTCGGAAGG
320 TTCTATTTTTCACGATTTTTGAAAC-TTTTGTGGTTCGGGATTTTTTAAAAATTTTTT-GAAAGG
** * * * * *
20396944 AGTTTTGGCAACAAACTTGGTAGACGTGGTCCTTGTATTTTTGTTGGTACGCACAAAAAAATTCA
383 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCA
* * * * *
20397009 GTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAAACACT
448 GCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20397074 TTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCAA
513 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* **
20397139 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATTGCACATCATGTGC
578 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
** * * * * *
20397204 GCACACCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATGCT
643 GCACACCCCCCACCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * *
20397269 CCGACGATGGTGCCCCGACGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTG
708 CCGACGATGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTG
** * * ** * * *
20397334 CCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGTATG-AACTCCT-TATGCTTAGATTGGGAA
773 CCACAACCCTTGGTCCGATCCCATCTTAGACTGGGAATGAAACT-CTGTATGCTTAGACTGGGAA
* * * * * * *
20397397 TGAACTCTGTATGCCTAAGTCAACCCACGAAAGAAGCGTGCGGGCACTCAGTCGGCCAGAGGGGC
837 TGAACTCTATATGTCTAAGTCAACCCATGAAAG-AGCGTTCGGGCACTCAGCCGGCCAAAGGGGA
*
20397462 GGGATAA
901 GGGATGA
* * * * ** * * *
20397469 GCAAGTCAGGAATTGGTCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTC-ACT
1 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGTCGGAACCCTCGA-T
* * * * * *
20397533 CTGATCTAATCATAGACTGGGAACGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGC-
65 CCGGTCTAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCG
* * *
20397597 GG-GCA---G-GCGGGCGGGCACTACGCCGACCA-AAGAGACGGGATGCGCAAGCCGTGGATCGA
130 GGCGCAGGCGAGCGGGCGGGCACTACACCGGCCAGAA-AGACGGGATGCGAAAGCCGTGGATCGA
* * * *
20397656 TAGGGCGGTAGGTGGGTTTAGGAACAGCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
194 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
*
20397721 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
259 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
20397786 ATTTTTCACGATTTTTGAAACTTTTGTGGTTTGGGATTTTTTAAAAATTTTTTGAAAGGAGTTTT
324 ATTTTTCACGATTTTTGAAACTTTTGTGGTTCGGGATTTTTTAAAAATTTTTTGAAAGGAGTTTT
20397851 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAA
389 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAA
20397916 AACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
454 AACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
20397981 GCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
519 GCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
20398046 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
584 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
**
20398111 CCCCCACCCCCCCGATCGCCGGAACCCTAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGACG
649 CCCCCACCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
20398176 ATGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTGCCACAA
714 ATGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTGCCACAA
*
20398241 CCCTTGGTCTGATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTC
779 CCCTTGGTCCGATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTC
20398306 TATATGTCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTCAGCCGGCCAAAGGGGAGGGATGA
844 TATATGTCTAAGTCAACCCATGAAA-GAGCGTTCGGGCACTCAGCCGGCCAAAGGGGAGGGATGA
*
20398371 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTGCTGTCGGAACCCTCGATC
1 GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGTCGGAACCCTCGATC
* * *
20398436 CGGTCTGATCTTAGAGTGGGAAAGAACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCGG
66 CGGTCTAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGG
20398501 GCAAGCAGGCGAGCGGGCGGGTTGGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGA
131 GC--GCAGGCGAGCGGGC--G--GGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGA
20398566 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
190 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
*
20398631 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
255 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
20398696 TTCTATTTTTCATGATTTTCGAAACTTTTTGCGGCTCGAGATTTTTT-AAAATTTTTTCGGAAGG
320 TTCTATTTTTCACGATTTTTGAAAC-TTTTGTGGTTCGGGATTTTTTAAAAATTTTTT-GAAAGG
* * *
20398760 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-ACATTT
383 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACA-ATTC
* **
20398824 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTCCCCATTTCAGACAC
447 AGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
20398889 TTTAATGGCTGCTGGCAGCAAACCTGT-AAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTCG
512 TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
** **
20398953 AGGTTTGATGATCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
577 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * *
20399018 CGCACACCCCCCAGCCCCCCCGATCGTCGGAA-CCTCAATGCCACCGGTCAGGTTCTCCGGCGAT
642 CGCACACCCCCCA-CCCCCCCGATCGCCGGAACCCT-AATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * *
20399082 GCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGACA-CAGCACGTGCCCGAG
705 GCTCCGACGATGATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAG
20399135 GTGAGCATGT
Statistics
Matches: 2304, Mismatches: 238, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
901 415 0.18
902 379 0.16
903 4 0.00
904 1 0.00
906 120 0.05
907 3 0.00
908 1 0.00
909 1 0.00
910 18 0.01
912 2 0.00
913 4 0.00
914 697 0.30
915 659 0.29
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (907 bp):
GCAAGACGGGGATCGACCGGGTCCCCTTCTGCATGCTGTCGATCCTACTGTCGGAACCCTCGATC
CGGTCTAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGG
GCGCAGGCGAGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTGTGGTTCGGGATTTTTTAAAAATTTTTTGAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAA
CTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
CCCACCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
GATGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCGAGCCAAGCATATGCTGCCACAACC
CTTGGTCCGATCCCATCTTAGACTGGGAATGAAACTCTGTATGCTTAGACTGGGAATGAACTCTA
TATGTCTAAGTCAACCCATGAAAGAGCGTTCGGGCACTCAGCCGGCCAAAGGGGAGGGATGA
Found at i:20399921 original size:26 final size:26
Alignment explanation
Indices: 20399892--20399944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20399882 CCAGTCCGAT
20399892 CTTAGACTT-GGAATGAACTCCATATG
1 CTTAGA-TTGGGAATGAACTCCATATG
*
20399918 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
20399944 C
1 C
20399945 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:20400220 original size:159 final size:159
Alignment explanation
Indices: 20399918--20400271 Score: 483
Period size: 159 Copynumber: 2.2 Consensus size: 159
20399908 ACTCCATATG
* * * * **
20399918 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCAAC
** * * *
20399983 CAGCCAGAAAGGTGGGATGCACAAGCCAGGGATCAGCCAGGTCCCTCTCTGCGTGCTGCTGATCC
66 CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
20400048 TACTACCAGAACCCTTGGTTCGGTCTGAC
131 CACTACCACAACCCTCGGTTCGGTCCGAC
* * *
20400077 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACAAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCAAC
* * * *
20400142 CGGCCAGAAGGGCAGGATGCACAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
* *
20400207 CACTGCCACAACCCTCGGTTCGGTCCGAT
131 CACTACCACAACCCTCGGTTCGGTCCGAC
*
20400236 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
20400272 ATCGACAAAA
Statistics
Matches: 169, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
159 169 1.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCAAC
CAGCCAGAAAGGCAGGATGCACAAGCCAGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
CACTACCACAACCCTCGGTTCGGTCCGAC
Found at i:20400563 original size:26 final size:26
Alignment explanation
Indices: 20400514--20400564 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20400504 CGGTCTGATC
**
20400514 TTAGATTGAGAATGAACTTTGTATGG
1 TTAGATTGAGAATGAACTCCGTATGG
*
20400540 TTAGATTGGGAATGAACTCCGTATG
1 TTAGATTGAGAATGAACTCCGTATG
20400565 CCCAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TTAGATTGAGAATGAACTCCGTATGG
Found at i:20401434 original size:26 final size:26
Alignment explanation
Indices: 20401405--20401457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20401395 CTGATTCGAT
*
20401405 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20401431 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20401457 C
1 C
20401458 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20402189 original size:26 final size:26
Alignment explanation
Indices: 20402160--20402212 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20402150 CTGGTCCGAT
20402160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20402186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20402212 C
1 C
20402213 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20402548 original size:26 final size:26
Alignment explanation
Indices: 20402519--20402571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20402509 CCGGTTTGAT
20402519 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20402545 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20402571 C
1 C
20402572 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20402643 original size:359 final size:347
Alignment explanation
Indices: 20401977--20402678 Score: 909
Period size: 359 Copynumber: 2.0 Consensus size: 347
20401967 GGGGCGAATA
* *
20401977 TAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCCTCGACCCCCCAATCGT
1 TAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCCCCGACCCCCCAATCAT
* * *
20402042 CAGAACCCTAATGCCGTCTGTCAGGTACTCCGACGATGCTGCCACTACGAAGAAAAATGCGGCAC
66 CAGAACCCCAATGCCGTCAGTCAGGTACTCCGACGATGCTGCCACAACGAAGAAAAATGCGGCAC
* * * *
20402107 TAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
131 CAGCACATGCCCAAGCCCAGCATGGGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
20402172 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
196 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCA
* * ** * ** *
20402237 TGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGACAGGTCCCCCTCTG
261 TGCAGGCACTCAACCACCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGACAGGTCCCCCTCTG
*
20402302 CGTGCTGCCGATCCTACTACCG
326 CGTGCTACCGATCCTACTACCG
* * * *
20402324 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCA
1 TAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCCCCGACCCC-CCAATCA
* * * * *
20402389 TCGGAACCCCAATGCTGTCAGTCAGGTTCTTCAACGATGCTCCGATGATGGTGCCCCAACGAAGA
65 TCAGAACCCCAATGCCGTCAGTCAGG----T-----A--CTCCGACGATGCTGCCACAACGAAGA
* ** * * ** **
20402454 AAAATGTGGCACCAGCACATGGTCGAGCCTAGCATGGGCTACTGCAACCCTCGGTCCGGTTTGAT
119 AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGGGCTACCACAACCCTCGGTCCGGTCCGAT
*
20402519 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
184 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
20402584 ACAAAATGAGCGTGCAGGCACTCAACCACCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGCCG
249 ACAAAACGAGCATGCAGGCACTCAACCACCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGACA
*
20402649 GGTCGCCCTCTGCGTGCTACCGATCCTACT
314 GGTCCCCCTCTGCGTGCTACCGATCCTACT
20402679 GCCGCAACCC
Statistics
Matches: 300, Mismatches: 43, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
347 53 0.18
348 27 0.09
352 1 0.00
357 1 0.00
359 218 0.73
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (347 bp):
TAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCAAACCCCCCCCGACCCCCCAATCAT
CAGAACCCCAATGCCGTCAGTCAGGTACTCCGACGATGCTGCCACAACGAAGAAAAATGCGGCAC
CAGCACATGCCCAAGCCCAGCATGGGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCA
TGCAGGCACTCAACCACCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGACAGGTCCCCCTCTG
CGTGCTACCGATCCTACTACCG
Found at i:20404159 original size:26 final size:26
Alignment explanation
Indices: 20404123--20404175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20404113 ATCGGTCGAT
20404123 CTTAGACTGGGAGGGAACTCCGTATG
1 CTTAGACTGGGAGGGAACTCCGTATG
* **
20404149 CTTAGGCTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAGGGAACTCCGTATG
20404175 C
1 C
20404176 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAGGGAACTCCGTATG
Done.