Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 114 of 117
Found at i:20405058 original size:26 final size:26
Alignment explanation
Indices: 20405022--20405109 Score: 176
Period size: 26 Copynumber: 3.4 Consensus size: 26
20405012 TAACCCTCGA
20405022 AATGAACTCCGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACTGGG
20405048 AATGAACTCCGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACTGGG
20405074 AATGAACTCCGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACTGGG
20405100 AATGAACTCC
1 AATGAACTCC
20405110 ATAGGCCTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACTGGG
Found at i:20406870 original size:26 final size:26
Alignment explanation
Indices: 20406834--20406886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20406824 CCAGTTTGAT
*
20406834 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20406860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20406886 C
1 C
20406887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20407766 original size:26 final size:26
Alignment explanation
Indices: 20407737--20407789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20407727 CCGGTCCGAT
*
20407737 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
20407763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
20407789 C
1 C
20407790 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:20408654 original size:26 final size:26
Alignment explanation
Indices: 20408618--20408670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20408608 CCAGTCTGAT
20408618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20408644 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20408670 C
1 C
20408671 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20409664 original size:26 final size:26
Alignment explanation
Indices: 20409613--20409665 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20409603 CCGGTCTGAT
* *
20409613 CTTAGACTGGCAATAAACTTCGTATG
1 CTTAGACTGGCAATAAACTCCATATG
* *
20409639 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATAAACTCCATATG
20409665 C
1 C
20409666 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCATATG
Found at i:20411422 original size:26 final size:26
Alignment explanation
Indices: 20411393--20411443 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20411383 GATCCGATCT
20411393 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
20411419 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
20411444 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:20412319 original size:26 final size:26
Alignment explanation
Indices: 20412289--20412341 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20412279 CCGATCCAAT
20412289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20412315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20412341 C
1 C
20412342 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20414136 original size:26 final size:26
Alignment explanation
Indices: 20414085--20414137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20414075 CTGGTCCGAT
*
20414085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20414111 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20414137 C
1 C
20414138 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20414307 original size:899 final size:898
Alignment explanation
Indices: 20403400--20416952 Score: 13684
Period size: 898 Copynumber: 15.1 Consensus size: 898
20403390 TGTGCTGTCA
* * * * *
20403400 CAACCCTCGGTCCGGTC-CAGTCTTAGACTGGGAATGAACTCCCTATGCCTCAGCCAACCGATGA
1 CAACCCTCGGTCCTGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * * *
20403464 AATGA--------GCGGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCAAGCCATGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
20403521 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
20403586 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
20403651 TATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* * * *
20403716 CTGGCCCTAAACTTGGTAGATGTGATCCTTGTATATTTT-TT-GCTGTGCACAAAAAAATTCAGC
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGC-ATGCACAAAAAAATTCAGC
* *
20403779 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20403844 AATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20403909 TTTGATGAGGGATAGGGGG-CAAT-TAAGGGCCAAGTAACCAGCACTCATTCGCACATCATGTGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCA-TCGCACATCATGTGC
* * *
20403972 GCACACCCCCCGG-CACCCCGAATCGTCGG-ACCCCAATGCCACC-ATTGTCAGGTTCTCCGACG
581 GCACCCCCCCCGGCCCCCCCG-ATCGTCGGAACCCCAATGCCGCCGA---TCAGGTTCTCCGACG
* * * ** *
20404034 ATGCTCCGACGAT-GTG-CCCGAGAAGAAAATTTCTACACCAG-ACATGCCCGAGCCCATCATGT
642 ATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** ** *
20404096 ACTGTTCGCAACCCTCGAT-CGGT-CGATCTTAGACTGGGAGGGAACTCCGTATGCTTAGGCTGG
707 GCT-ACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
20404159 GATTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCACGCCGGCCAGAG
771 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAG
* * * * *
20404224 GGGCGGGATGCGCCAGCCTGGGGCTCGAT-GGGTCCCCCTCTACGTGCTGGCGATCCTG--GCCC
835 GGGCGGGATGCGCAAGCC-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* ** *** * * *
20404286 CAAACCTTTGTTAAGTCCGATCTTAGACCTAGGAATAGAACTTCCGTATGCCTACGTCCAACCGA
1 CAACCCTCGGTCCTGTCTGATCTTAGA-CTGGGAAT-GAAC-TCCGTATGCCTAAG-CCAACCGA
* * * *
20404351 GCGAAAAGTGCGGGCGGGCCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGTTGCGCAAGC
62 -CG-AAA---CGAGCGGG-CGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
20404416 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTT-TCATGAGCGAATGCCAT
121 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCAT
* * *
20404480 TTTTATGGCTTGTAAATTCACACAATGGACCCTTAAGCCTTCGCGTGAAGTTTCAT-GCAAGACG
185 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
20404544 ACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACAGTTCAGGATTTTTTAAAATTTTTTC
250 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*
20404609 GAAAAGGAGTTTTGGCCCCAAACTTGGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAA
315 G-AAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20404674 ACAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGAGCATTTG-AAAAAGTGT-CCCATTT
378 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TT
* * *
20404737 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATTCCTGAAATGCTC-TTAAGGGAGTG
442 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-T-CTCAAATGCTCTTTAAGGGGGTG
* * *
20404801 TGAGTTCTCGAGTTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
505 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
20404866 AAATCATGTGCGCACACCCCCCTGGCCCCCCCGATCATCGGAACCCCAATGCTGTCGGTCAGGTT
570 ACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTT
* * *
20404931 CTTCGGCGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
634 CTCCGACGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* **
20404996 CCAGCACGTGCTGCCGTAACCCTCGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
698 CCAGCA--TG-TG-C-T-A--C-CG----CAAC-CC---T-C---GA-TCCG---G---TCCG-A
* *
20405061 TGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATAGGCCTAAGTCAAC
734 T-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
20405126 CCACGAAAGGAGCTTGCGGAC-CTCAGT-CGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGG
798 CCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * *
20405189 TCGGGTCCCCCTCTGCATGCT-ACTGATCATGCTACCG
862 TCGGGTCCCCCTCTGCGTGCTGAC-GATCCTGCTGCCG
* * * * * * *
20405226 TAACCCTTGAT-TTGGTC-CAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACA
1 CAACCCTCGGTCCT-GTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** * **
20405289 AAACGAGCGGGAGGGCGAGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCACG
64 AAACGAGC----GGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
20405354 GATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
20405419 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCG
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * * ** *
20405484 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCGATATTTTTTAAAATTTTTTTGAAAG
255 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* * * * * *
20405549 GACTTTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAATATTT
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
20405614 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACAC
385 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20405679 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20405744 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCACCGCACATCATGTG
515 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * * ** *
20405809 TGCACACCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCC-ACGGTCAAGTTCTTTGATGATG
580 CGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
* * * * *
20405873 CTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCACCATGTTC
645 CTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
20405938 TACCGTAA-CC-C--T-C-G---G----T---CT--G---G---TCCG-AT-CTGAGACAGGGAA
709 TACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
20405977 TGAACTCTGTATGCTTAAGTCAACCCACAAAACGAGCGT-CTGAGCGCTCAGT-CGGCCAGAGGG
774 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCA-TCCGGCCAGAGGG
* * * * * *
20406040 GTGGGATGCGCAAGTCGGGGATCGATCGGGTGCCCCTCTGCGTGCTGCCGATCCTGCAGCTG
837 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* * *
20406102 CAACCCTTC-ATCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATG
1 CAACCC-TCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
20406165 AAATGA----GCGGACGGGTGGGCACCACGTCGGCCAGAGAGACGTGATGCGCAAGCCGTGGATC
64 AAACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
20406226 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* * *
20406291 TTGTAAGTTCATAAAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
20406356 CCATTTTTCATGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTAG-AAGGAGT
259 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * *
20406420 TTCGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCATAAAAAAA-TCAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
20406484 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20406549 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20406614 TTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--
* * * * * * * *
20406679 CACCTCCCCCCGGGCACCCCCGATCGTAGGAACCCAAATGTCGTCGGTCAAGTTCTCCGATGATG
582 CACC-CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
* * * *
20406744 CTCCGACGATGGTCCCCCG-GTGAGAAAAATGCGACACCAGCACATGCCCGAGCCCATCATGTGC
645 CTCCGACGATGGTGCCCCGCG-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * ** *
20406808 TGA-CGCAACCCTCCATCCAGTTTGATCTTAGACTGGGAATGCACTCCGTATGCTTAGACTGGGA
709 T-ACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
20406872 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT-CGGTCGGAGGG
773 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGG
* * * * * * * * *
20406936 GCGGGATGCGCAAGACGCGGATTGATCGGGTCCCCATCTGCTTGCTGCCTATCCTACTGCCA
837 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* * *
20406998 CAACGCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
1 CAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
20407062 AACGAGCGGGCGGACGGGTGGTCAGGC-ACTATGCCGACCAGAGAGACGGGATGCGTAAGCCATG
65 AACGAGCGGGCGGGCGGGCGGGCA--CTAC-AT--CGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
20407126 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * *
20407191 TGGCTTGTAAATTCATACAATGGTCGCTTAGGACTTCACGTGAAGTTTCATGGCAAGACGACTCG
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* **
20407256 TTTTTTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAA
255 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAA
* * * * * * *
20407321 -GAGTTTTGGCCCTAAACTTGGTAGACGTTATCCTCGTATTTTTGTTGGAATCCATAAACAAATT
319 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
20407385 CAGC-AGAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
384 CAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
20407449 ACTTTAATGGCTACTGGCAGTAAACTTGCAAAGTCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
448 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
20407514 GGAGGTGTGATG-GGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTT
513 CGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * * * *
20407578 GTGCGCACAGCCCCTGGCTCCCCCGATTGCCGGAACCCCAATGCCGCC-AGTCAGGTTCTCTGAC
577 GTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGAC
*
20407642 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
641 GATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
20407707 GTGCTACCGTAAACCTC-AGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACT
705 GTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
20407771 GGGAATGAACTCTGTATGCCTAGGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
769 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAG-
* * * *
20407836 AGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTGCT
833 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCC
20407901 G
898 G
* * * * * * *
20407902 CAACCCTTGGTTCGGTCTGATCTTAGACT-GGAACGAACTCCGTATGCCTAAGCCAACTGATGTA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
20407966 ACGA--------GCGGGC-GG------A-CGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
20408015 TAGAGTGGCAGGTGGCTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* *
20408080 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
20408145 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTGAAATTTTTTCGAAAGGGGTTT
261 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* ** * * * * *
20408210 TGGTCCCAAACTTCTTAGACATGATCCTTATATTTTTTTTGGCTTCCACAAAAAAATTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
20408275 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
20408340 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTT
456 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
20408405 GATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGTACCCATCGCACATCACGTGCACA-C
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACC
* * * * * * * ** *
20408469 ACCCCCAG-TCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAAGTTCTCTGGTGATGCTCCGT
586 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGA
* * * * *
20408533 GGATGGTACCCCGACGAAGAAAAATGTGGGC-CCAGCACATGCCCGAGCCCAGCATGTGTTGCCG
651 CGATGGTGCCCCG-CGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * * *
20408597 CAACCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAAC
714 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
20408662 TTCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGAGAT
779 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGAT
* * * * * * * * *
20408727 ACGGAAGCCGAGGATCGACCGGGTCCCCCTTTGAGTGCTGCCGATCCTACTGTCG
844 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* * * * * * *
20408782 CAACCCTCAGTCCGGTCTGATCTTATACTGAGAATGAACTCTGTATGCCTAAGCCAACGGACAAA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * **
20408847 ACGAATGGGCGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGA
66 ACG-A---GCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * * *
20408911 TCGATAGGGTGGTAGATAGCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCGTTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
20408976 GCTAGTAAATTCATACAATGG-CGCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGT
192 GCTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
20409040 TTTCTTTTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTAAAAATTTTTTTCG-AAG
256 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAG
* * *
20409104 GAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTA
320 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * * *
20409169 AGCT-AAAACTCAAAGAGTACAAGATTTTGTGACCGTTTGAAAAAGGTGTCCCCACTTAAGACAC
385 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
20409233 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGTGTGTGAGTTCTCG
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20409298 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACAT--T-TT
515 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** ****** ** ** * *** **** * ** * *
20409360 CAAAACTTTTTACGG--TTCAGGAT-TTTTTAA----AATTTTTTCGGAAGGAGTTTTGGCCCCA
580 C-GCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA-TGCCGCCG-ATCAG-GTT--CTCC-
* * * * * * * ** * * *
20409418 AAC-CTGGT-AGACG-TGATGGCCC-C-ATTGTACATCATG-TG---C-GCACATCCCTCCAGCC
638 GACGATGCTCCGACGATGGTGCCCCGCGA-AG-A-AAAATGCGGCACCAGCACATGCC-CGAG-C
** ** * * * * * *
20409473 CCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTTCGA-C-GATGCTCTGGCG-ATGGT
698 CCAGC-AT-GT-GCTACCGCAA--CCCTCGATCCGG-TC--CGATCTTA-G-ACTGG-GAAT-GA
* * * * *** * * * * ** *
20409535 GCCCCGGCGAAGAAAAATAC-GGTACCA-GCACATGCCCG-A-GCCCAACATGTGC-TGCCGC-A
751 ACTCC-G-TATG-CTTAGACTGGGA--ATGAAC-T--CCGTATG-CCTA-A-GT-CAACCCACGA
** * * * * * * * **** * ** *
20409594 AAC-CTCTGTCCGGTCTGATCTTAGACTGGCAATAAACTTC-GTATGC-TTAGACTGGGAATGAA
804 AACGAGC-GTGCGGGC-G--CTCA-TCCGGCCA-GAGGGGCGGGATGCGCAAG-CCGGG---G-A
* ** * * * * * *
20409656 CTCCATATGCCTAAGTCAACCCAC-GAAACGAGC-GTACGGGCACTCAAACGAGCAGAGGGTCGG
858 -T-C-GAT--C-GGGTC-CCCCTCTG---CGTGCTG-AC--G-A-TC---C-TGC----TG-C-C
20409719 G
898 G
* *
20409720 TCCCCCTCTACGTGCTGCCGATCCTGTAGACGCAACCTTAGTGCCGATCTGATCTTAGACTGGGA
1 -CA------A----C--CC--T-C----G--G--TCC----T---G-TCTGATCTTAGACTGGGA
* * * * * *
20409785 ATGAACTTCGTATGTCTAAGCCAACCGACGAAATGAGCAGGTCCGGCGGGTGGGCGGGTACTACG
34 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G---GGCGGGCGGGCGGGCACTACA
* **
20409850 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGCACATC
94 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
20409915 TCCGTATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
159 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * ** *
20409980 TTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTTTTTTTCAGGATTTTCAAAACTTTTTCC
224 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * *
20410045 TGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
289 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * **
20410110 TGTATTTTTGTTCGCATGTACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTACGAC
354 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
20410175 CATTTGAATAAAGTGTCCCCATTTCATACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCT
419 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
20410240 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
484 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
20410305 CCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCGCCCTGATCGTCAGAAC
549 CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAAC
* *
20410370 CCTAATGCCGCC-ATTCAGGTTCTCCGACGATGCTTC-AGCGATGGTGCCCCGACGAAGAAAAAT
613 CCCAATGCCGCCGA-TCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCG-CGAAGAAAAAT
* * * * * * *
20410433 ACGACACCAGTACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTTGATCCAGTCTGATCTTAG
675 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAG
* * * *
20410498 ACTGCGAATGAACTCCGTATGCTTAGACTGGGAACGAACTGCTTATGCCTAAGTCAACCCACGAA
740 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * ** * * ** * **
20410563 ATGAGCGTGCCGATGCGCAGCCGGCCAGAGGGGCGGGATGCTTAAGCCGGAGATCGGCCGGGTCC
805 ACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * ** *
20410628 CCCTCTGCGTGCTGCCAATCCTATTGCTG
870 CCCTCTGCGTGCTGACGATCCTGCTGCCG
** * * *
20410657 CAACCCTCAATCCTGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * ** * * *
20410722 ATGAGCGGGTGGGCGGGTGAGCATTACGCCGGTCGGAGAGATGGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
20410787 TAGGGTGGTAGGTGGGTTTACGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
20410852 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * *
20410917 ATTTTTCAC-CTTTTTCAAAACTTTTTGCTGTTCGGGATTTGTTAAAATTTTTTCGGAAGGATTT
261 ATTTTTCACGATTTTT-GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* * *
20410981 TTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTAGCGTGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20411046 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAC
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
20411111 TGGCTACTGGTAGCAAACCTATAAAATATCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20411176 TGATGAGGGACAGGGGGCCAATATAAGGGCCAA-TACCAGCACCCATCGCACATCATCTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
20411240 ACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCACCTG-TCAGGTTCTCCGACGATGCTCC
585 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC-GATCAGGTTCTCCGACGATGCTCC
* * * * * ***
20411304 GATGATGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCTAGCATGTGCTGTT
649 GACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * * * * *
20411369 GTAACCATCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAGACTGGGAATGAA
713 GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
20411434 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTTCGT-CGGCCAGAGGGGCGGG
778 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCATCCGGCCAGAGGGGCGGG
* ** * * * * ** *
20411498 ATGCGCAAGCAGGGGATCGGCCGGGTCCTCCTTTACGTGCTGCCGATCCTATTGTCG
842 ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* * * * * *
20411555 TAACCCTCAGTCCTGTCTAATTTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
20411620 ACGAGCGGGCAGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
20411685 TAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
*
20411750 GTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
20411815 ATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTGTTAAAATTTTTTCGAAAGGAGTTT
261 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
20411880 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA-AAAAAAAGTTCAGCTA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTA
* * * * *
20411943 AAAGCTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAAACACTTTAT
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
20412008 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGCTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20412073 TGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
20412138 ACCCCTCCGG-CCCCCCGTTCGTTGGAACCCCAATGCCGCCGATCAGCTTCTCCGGCGATGCTCC
585 -CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCC
* * **
20412202 GACGATGGTGCCCCAGCGAAGAGAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTC
649 GACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
20412267 GCAACCCTCGCTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
713 GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
20412332 CTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCAGGCGCTCATCCGACCAGAGGGGCGAGA
778 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGA
* * * * **
20412397 TGCGCAAGCTGGGCATCGGTCGGGTCCCCCTCTGTGTGCTGAC-ATTCCTATTGCCG
843 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGA-TCCTGCTGCCG
* * * * * *
20412453 TAACCCTCGATCTTGT-TCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGA
1 CAACCCTCGGTCCTGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
20412517 AACGAGCGGGCAGGCAGGCGGGCACTACATTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
20412582 ATAGCGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
20412647 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
20412712 TATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTGTTAAAATTTTTTCGAAAGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
*
20412777 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTATGCA-AAAAAAAGTTCAGCT
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCT
* * *
20412840 AAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTTAGACACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
20412905 TTGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCTTCAA-GGGCTGTGAGTTCTCGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
20412969 TTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCAG-ACATTATGTGCGC
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGC
* * * * **
20413033 ACACCCCCCC-GACCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT
583 AC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCT
* ** * * *
20413097 CCGACGATGGTGCCCCGGGAAAGAAAAATATGGTACCAGCACATGCCCGAGCCCAGCATGTTCTG
647 CCGACGATGGTGCCCCGCG-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * ** * * * *
20413162 CTGCAACCCTCGGTCCAATCTGACCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATG
711 CCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
20413227 AACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAACCGGCCAGAGGGGCGA
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGG
* * * * * ** *
20413292 GATGCGCAAGCTGGGGATCGGTCGGGTCCCTCGCTACGCACT-ACCGATCCTGCTGCCA
841 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGA-CGATCCTGCTGCCG
* * *
20413350 TAACCCTTGGT-CTGATCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
20413414 AACGAGCGTGCGGGCGGGTGGGCAGTATATCGACCAGAGAGACGGGATGCACAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** **
20413479 ATAGGGTGGTAGAAGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* *
20413544 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCATTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
20413609 TATTTTTCATGATTTTTGAAACTATTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
** *
20413674 TTCCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20413739 AAAACTAGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20413804 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20413869 TGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * **
20413934 CCCCCCCGGCCCCCCCGATCGTCGAAACCCCAAAGCCGCCGATCAGCTTCGCTGGTGATGCTCCG
585 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCG
* * * * *
20413999 GCGATGATGCCCCAGCGAAGAGAAATGCGGCACTAGCACATGCCCGAGCCCAGCATATGCTACCG
650 ACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* *
20414064 CAACCCTCGCTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
714 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
** * * * * *
20414129 TCTATATGCCTAAGTCAATCCACGAAACGAGCGTACGGGCGCTCATCTGACCAGAAGGGCGGGAT
779 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGAT
* * * * * *
20414194 GCGCAAGCCGGGTATCGAACGGGTCCCCCTCTGCATGCTGACAATCCTGTTGCCA
844 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* **
20414249 CAACCCTCGGTCCTGTCTGATCTTAGACTGGTAATGAACTCTATATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
20414314 ATGAGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAACCATGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
20414379 TAGCGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTTATGGCT
* * * *
20414444 TGTAAATTCATGCAATGGTCCCTTAAGCCATCACATGAAGTTTCATGGCAAGACGACTTGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * * * *
20414509 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTGTTAAAATTTTTTTGAAAGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* *
20414574 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCTGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20414639 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTCAGACACTTTAT
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20414703 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * * *
20414768 TGATGAGGGATAAGGGGCCAATATAAGGGCCAACTACCATCACCTAACACACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
20414833 ACCCACTGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGG---T-------T-CTCCG
585 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCG
** * **
20414887 ACGATGGTGCCCCGGCGAAGAAAAATGTAGCACCAGCACATGACCGAGCCCAGCATGTGCTGTCG
650 ACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * *
20414952 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
714 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
20415017 TGCTTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGT-CGGCTAGAGGGGTGGGA
779 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGGGCGGGA
* * * * *
20415081 TGCGCAAGCCGGGGATCGACCGGTTTCCCCTCTACGTGCT-ACCGATCCTGCAGCCG
843 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGA-CGATCCTGCTGCCG
* * * * ** *
20415137 CAACCCTCGGTCCGGTATGATCTTAGACTAGGAATGAATTTTGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * * * *
20415202 ACAAGTGGGCGGGCGGGCGGGCGGGCACTACGCCAGCCATAGAGACAGGATGCGTAAGCCGTGGA
66 AC----GAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20415267 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTATGTGCCAATTCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
20415332 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGGCTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
20415397 TTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
*** *
20415462 GTTTTGGTAGCAAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20415527 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
20415592 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAATTCTTGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
20415656 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACAATTTCAAAA
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC-A--TC--AT
* **** **** ** ********* ** ****** * * * *
20415721 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACCTGGTAC-
577 GTGCGCACCCCCCCCG-GCCCCCCCGA--TCGTCGGAA-CCCCAAT-GCCGCC-GATCAGGTTCT
* * * * *** * * ** * * * * * **
20415784 ACG-TGATCCT-TGTATTTTTGATGGCATGC-ACAAAAAAATTCAGCTA--A--A-AAGTCAAAG
636 CCGACGATGCTCCG-A-CGATGGTGCCCCGCGA-AGAAAAATGCGGC-ACCAGCACATGCCCGAG
** * * * * * * * ** ** *** *
20415841 TATACAACATGTGC--GCACACCCCCCCAGGCC-CCCCGATCGTCGGAAC-CCCAATG--TTGCC
697 --CCCAGCATGTGCTACCGCAACCCTCGA-TCCGGTCCGATC-TTAG-ACTGGGAATGAACT-CC
* * ** * * * *** *
20415900 G-AT-C-AAGTTCTTCG-ATGATGCTCCGGGGATG-GT--G-C--CCCGAC-AAA-GAAAAATAC
756 GTATGCTTAG-ACTGGGAATGA-ACTCC--GTATGCCTAAGTCAACCC-ACGAAACG-AGCGTGC
* * * * * * * * * * * **
20415953 -GGCAC-CAGCACTTGCCCGA--GCCTAGCATGTGCCA-CC--GTAACCCTC-GGT-----TC-G
815 GGGCGCTCATC-C-GGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
*
20416004 -GT-C---CAAT-CT--TAGACCG
877 CGTGCTGACGATCCTGCT-G-CCG
* * * * * * *
20416020 GAA--AT-GAACTCC-GTATG--CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGATG
1 CAACCCTCG--GTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** * * * *
20416079 AAACGA----GCAGGCGGGCGGGCACTACGTCGGTAAGAGAGACGAGATTCGCAAGTCGTGGATT
64 AAACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * * *
20416140 GATAGGGTGGTAGATGTGATTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* *
20416205 TTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTATT-ATGGCAAGATGACTCGTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT-TTCATGGCAAGACGACTCGTTT
* * * * *
20416269 TCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAT
258 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG
* * *
20416334 TTTTGG-TCCAAACTTGGCAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGC
323 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
20416398 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
20416463 AATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCACTTTAAGGGCGTGTGAGTTCTTGAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20416528 TTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
20416593 A-CACCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTC
583 ACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTC
* * * *
20416657 CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC-AACCCTCGCATGTGCTG
648 CGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTA
* * *
20416721 CTGCAA-CC-C--T-CGGTCTGATC-----C----AAT---CT-C--A-----A-ATTGGGAATG
711 CCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
20416760 AACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCGTACGGGCACTCAGT-CGGCCAGAGGGGC
776 AACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGGGC
* * * * * * * *
20416824 AGGATGCACAAGCCGGGGATCGATCGCGTCCCCCTTTGTGTGCTGTCGATCCTGCCGTCG
839 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
* * * * * * *
20416884 CAACCCTTGGTCCAGT-TCAATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 CAACCCTCGGTCCTGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
20416948 AACGA
65 AACGA
20416953 ACGTGCGGCC
Statistics
Matches: 10620, Mismatches: 1580, Indels: 952
0.81 0.12 0.07
Matches are distributed among these distances:
840 4 0.00
841 1 0.00
842 6 0.00
843 5 0.00
844 2 0.00
845 2 0.00
846 3 0.00
847 13 0.00
848 15 0.00
849 6 0.00
850 1 0.00
851 8 0.00
852 2 0.00
854 1 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 9 0.00
861 16 0.00
862 24 0.00
863 7 0.00
864 15 0.00
865 11 0.00
866 201 0.02
867 61 0.01
868 269 0.03
869 7 0.00
870 229 0.02
871 324 0.03
872 3 0.00
874 2 0.00
875 48 0.00
876 123 0.01
877 7 0.00
879 43 0.00
880 83 0.01
881 241 0.02
882 18 0.00
883 440 0.04
884 6 0.00
885 2 0.00
886 21 0.00
887 10 0.00
888 282 0.03
889 13 0.00
890 18 0.00
891 305 0.03
892 165 0.02
893 13 0.00
894 13 0.00
895 29 0.00
896 209 0.02
897 860 0.08
898 1482 0.14
899 905 0.09
900 938 0.09
901 47 0.00
902 65 0.01
903 268 0.03
904 516 0.05
905 274 0.03
906 256 0.02
907 54 0.01
908 32 0.00
909 23 0.00
910 20 0.00
911 21 0.00
912 3 0.00
913 3 0.00
914 2 0.00
915 1 0.00
916 3 0.00
917 3 0.00
918 3 0.00
920 1 0.00
921 8 0.00
922 8 0.00
923 2 0.00
924 6 0.00
925 2 0.00
926 4 0.00
927 2 0.00
928 3 0.00
929 4 0.00
930 2 0.00
931 78 0.01
932 42 0.00
933 160 0.02
934 220 0.02
935 75 0.01
936 10 0.00
937 23 0.00
938 56 0.01
939 16 0.00
940 93 0.01
944 1 0.00
945 1 0.00
947 2 0.00
948 1 0.00
949 1 0.00
951 7 0.00
952 1 0.00
953 5 0.00
954 5 0.00
955 1 0.00
958 1 0.00
959 1 0.00
960 2 0.00
961 1 0.00
962 2 0.00
963 2 0.00
964 13 0.00
965 5 0.00
966 3 0.00
967 6 0.00
968 10 0.00
969 7 0.00
970 48 0.00
971 57 0.01
972 233 0.02
973 171 0.02
974 5 0.00
975 10 0.00
976 7 0.00
977 5 0.00
978 19 0.00
979 5 0.00
980 20 0.00
981 5 0.00
982 6 0.00
983 7 0.00
984 4 0.00
985 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACC
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCG
Found at i:20417014 original size:159 final size:160
Alignment explanation
Indices: 20416752--20417108 Score: 434
Period size: 159 Copynumber: 2.2 Consensus size: 160
20416742 AATCTCAAAT
* * * * **
20416752 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCGTACGGGCACTCAGTCGGCCA
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG-AAACGAACGTACGGCCACTCAACCGGCCA
* * * * *
20416817 GAGGGGCAGGATGCACAAGCCGGGGATCGATCGCGTCCCCCTTTGTGTGCTGTCGATCCTGCCGT
65 GAGGGGCAGGATGCACAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCGC
** * **
20416882 CGCAACCCTTGGTCCAGTTCAATGTTAGA-C
130 CGCAACCCTCAGTCCAGTCCAATCCTAGACC
* *
20416912 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGCCACTCAACCGGCCGG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGCCACTCAACCGGCCAG
* * *
20416977 AGGGGC-GAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTGC
66 AGGGGCAG-GATGCACAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCGC
**
20417041 CGCAACCCTCAGTCTGGTCCAATCCTAGACC
130 CGCAACCCTCAGTCCAGTCCAATCCTAGACC
* *
20417072 T-GGAATGAACTCTGTATGCCTAAG-CTAACCGATGAAA
1 TGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAA
20417109 TGAGCAGGCG
Statistics
Matches: 169, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
158 2 0.01
159 131 0.78
160 36 0.21
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (160 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGCCACTCAACCGGCCAG
AGGGGCAGGATGCACAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCGCC
GCAACCCTCAGTCCAGTCCAATCCTAGACC
Found at i:20417135 original size:159 final size:158
Alignment explanation
Indices: 20416752--20417169 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
20416742 AATCTCAAAT
* * * ** * ** *
20416752 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCGTACGGGCACTCAGTCGGCCA
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG-AAACGAACGGGCGGCCACT-AACCGGCCG
* * * * *
20416817 GAGGGGC-AGGATGCACAAGCCGGGGATCGATCGCGTCCCCCTTTGTGTGCTGTCGATCCTGCCG
64 GAGGGGCGA-GATGCGCAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCG
* ** * **
20416881 TCGCAACCCTTGGTCCAGTTCAATGTTAGAC
128 CCGCAACCCTCAGTCCAGTCCAATCCTAGAC
*
20416912 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGCCACTCAACCGGCCGG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGGGCGGCCACT-AACCGGCCGG
* *
20416977 AGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTGCC
65 AGGGGCGAGATGCGCAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCGCC
**
20417042 GCAACCCTCAGTCTGGTCCAATCCTAGACC
130 GCAACCCTCAGTCCAGTCCAATCCTAGA-C
* * * * *
20417072 T-GGAATGAACTCTGTATGCCTAAG-CTAACCGATGAAATGAGCAGGCGGGCGGGCACTACGCCG
1 TGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGA--A--CGGGCGGCCACTA-ACCG
* * * * *
20417135 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
60 GCCGGAGGGGCGAGATGCGCAAGCCGGGGATCGAT
20417170 AAGGTGGTAG
Statistics
Matches: 216, Mismatches: 34, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
158 1 0.00
159 133 0.62
160 37 0.17
161 1 0.00
162 1 0.00
163 43 0.20
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (158 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGGGCGGCCACTAACCGGCCGGA
GGGGCGAGATGCGCAAGCCGGGGATCGATCGCGTCCCCCTCTGCGTGCTATCGATCCTACCGCCG
CAACCCTCAGTCCAGTCCAATCCTAGAC
Found at i:20417810 original size:26 final size:26
Alignment explanation
Indices: 20417762--20417812 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20417752 CGTCCGATCC
**
20417762 TAGAATGGGAATGAACTTTGTATGCT
1 TAGAATGGGAATGAACTCCGTATGCT
*
20417788 TAGACTGGGAATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCGTATGC
20417813 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCT
Found at i:20418630 original size:26 final size:26
Alignment explanation
Indices: 20418594--20418646 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20418584 CCGATCCGAT
* * *
20418594 CTTAGATTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20418620 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20418646 C
1 C
20418647 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20419533 original size:26 final size:26
Alignment explanation
Indices: 20419497--20419575 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20419487 CTGGTCTGAT
*
20419497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20419523 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20419549 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20419575 C
1 C
20419576 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20420463 original size:26 final size:26
Alignment explanation
Indices: 20420421--20420496 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
20420411 TCCGATCTTG
20420421 GACTGGGAATTAAACTCTGTATGCTTA
1 GACTGGGAA-TAAACTCTGTATGCTTA
*
20420448 GATTGGGAATAAACTCTGTATGCTTA
1 GACTGGGAATAAACTCTGTATGCTTA
* *
20420474 GACTAGGAATGAACTCTGTATGC
1 GACTGGGAATAAACTCTGTATGC
20420497 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 37 0.82
27 8 0.18
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (26 bp):
GACTGGGAATAAACTCTGTATGCTTA
Found at i:20421383 original size:26 final size:26
Alignment explanation
Indices: 20421347--20421399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20421337 CCTGTCCAAT
*
20421347 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20421373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20421399 C
1 C
20421400 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20422269 original size:26 final size:26
Alignment explanation
Indices: 20422240--20422292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20422230 CCGGTCCGAT
20422240 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20422266 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20422292 C
1 C
20422293 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20423074 original size:294 final size:294
Alignment explanation
Indices: 20422531--20423104 Score: 880
Period size: 294 Copynumber: 2.0 Consensus size: 294
20422521 GTGGTTGGTG
* *
20422531 GGTTTAGGCACGTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAAGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
20422596 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
66 TGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * * * *
20422661 TTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTCAGAAAGTGTTTTGGCCCCAAAATTG
131 TTGAAACATTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAAGAGTTGTGGCACCAAAATTG
* *
20422726 GTAGACATGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
196 GCAGACATAATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
*
20422791 CAAGATTTTTTGACCATTTGCAGAGTGGTAGCTA
261 CAAGATTTTGTGACCATTTGCAGAGTGGTAGCTA
* ***
20422825 GGTTTAAGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAAGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
20422890 TGGTCCCTCAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
66 TGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * *
20422955 TTGAAACATTTTATGGTTCGGGA-TTTTTTAGAATTTTTTCAGAACGAGTTGTGGCACCAAACTT
131 TTGAAACATTTTACGGTTCGGGATTTTTTTA-AATTTTTTCAGAAAGAGTTGTGGCACCAAAATT
* * * * * *
20423019 GGCAGACGTAATCGTTGTATTTTTGTCGGCATGCACAAAAAATTTCAGGTAAAAACTCGAAGTGT
195 GGCAGACATAATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
20423084 ACAAGATTTTGTGACCATTTG
260 ACAAGATTTTGTGACCATTTG
20423105 AAAAAAGTGT
Statistics
Matches: 251, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
293 7 0.03
294 244 0.97
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (294 bp):
GGTTTAAGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
TTGAAACATTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAAGAGTTGTGGCACCAAAATTG
GCAGACATAATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTGTGACCATTTGCAGAGTGGTAGCTA
Found at i:20423445 original size:26 final size:26
Alignment explanation
Indices: 20423416--20423466 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20423406 CCGGTCCGAT
20423416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20423442 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20423467 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20426087 original size:26 final size:26
Alignment explanation
Indices: 20426051--20426101 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20426041 AGTCCAATCA
20426051 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
20426077 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
20426102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:20428565 original size:26 final size:26
Alignment explanation
Indices: 20428529--20428584 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20428519 CCAGTCCAAT
20428529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20428555 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20428581 CTTA
1 CTTA
20428585 AGTTAATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20430286 original size:26 final size:26
Alignment explanation
Indices: 20430235--20430287 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20430225 CCGGTCTGAT
* **
20430235 CTTAGACTGGGAATCAACTCTTTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
20430261 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
20430287 C
1 C
20430288 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:20431164 original size:26 final size:26
Alignment explanation
Indices: 20431126--20431178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20431116 TAGGTCCAAT
*
20431126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20431152 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20431178 C
1 C
20431179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20431329 original size:891 final size:887
Alignment explanation
Indices: 20429369--20432435 Score: 4459
Period size: 884 Copynumber: 3.4 Consensus size: 887
20429359 CGGTCTGATG
* * *
20429369 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAA-CGTGCTGGCGCTCAGC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGC
* * * * * * * * * ** * * *
20429433 CGACCAAAGGGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCTTCTTCTGCGTGCT-GTCGATC
65 CGGCCAGAGGGACGGGATGCACAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACT-GATC
* *
20429497 TTGCTGCCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TTGCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20429562 ACTGACGAAACGAGC-GTGCGGGCGGGCGAGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGC
194 ACCGACGAAACGAGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAGC
* * * *
20429626 CGTGGATCGATAGGGTGGTAAGTGGGTTTAAGAACATCTTGATATTTCTGCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * *
20429691 TTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAGGACGA
323 TTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
20429756 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
*
20429821 GAAGCAGTTTTGGCCCTAAACTTGGTAGACGTGATCAC-TGTATTTTTGTTGGCATGCACAAAAA
453 GAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCAC-AAAA
* * *
20429885 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * * *
20429950 GACACTTTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGAGATGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20430015 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
20430080 ATGTGCGCACACCGGCCCCCCCGGCCCCCCCGATCGTCGGAACCCAAATGTC-GCAGGTCAGGTT
711 ATGTGCGCACA-----CCCCCCGGCCACCCCGATCGTCGGAACCCCAATG-CGGCCGGTCAGGTT
* * * * *
20430144 CTCCGACGATGGTGCCCCTGCGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGTATGTGC
770 CTCCGACGATGGTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** ** * **
20430209 TACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATCAACTCTTTATGC
835 TGCCGTAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* ** *
20430262 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCT
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
* * * * * ** * * *
20430327 GGCCAGAGGGACGGGATGCCCAAGCTGGGGATCTGTCGGGTCCCCCTCTGTGTGCTGCCGATCAT
66 GGCCAGAGGGACGGGATGCACAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACTGATCTT
* ** ** *
20430392 GCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
20430457 CGACGAAACGAGCAGGCGGACGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGGAAG
196 CGACGAAACGAGCAGGC-G--GG-CGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAG
*
20430522 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20430587 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACG
322 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** **
20430652 ACTCGTTTACTATTTTTCATGATTTCCAAAAC-TTTTACAATTTGGGATTTTTTAAAATTTTTTC
387 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
* * *
20430716 ACG-AGGAGTTTTTGCGCC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
452 -GGAAGGAGTTTTGGC-CCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20430779 AAATTTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCACTAGAAAAAAGTGTCCCCATTT
515 AAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20430844 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20430909 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
20430974 TCATGTACGCACACCCCCCGGCCACCTCGATCATCGGAACCCCAATGCGGCCGGTCAGGTTCTCC
709 TCATGTGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCGGCCGGTCAGGTTCTCC
*
20431039 GGCGATGGTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
774 GACGATGGTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
20431104 GCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
839 GTAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* *
20431153 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
* *
20431218 GGCCAGAGGGACGGGATGCACAAGCCGAGGATCAACCGGGTCCCCCTCTACGTGCTACTGATCCT
66 GGCCAGAGGGACGGGATGCACAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACTGATCTT
* * *
20431283 GCTGCCGCAACCCTTGGTCCCATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTGAGCCAAC
131 GCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
20431348 CGACGAAAC--G-A-GCGGGCGGGCGGGCACTATGCCGGCCAGACAGACGGGATACGCAAGCCGT
196 CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAGCCGT
* *
20431409 GGATTGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
20431474 ATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
20431539 GTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTATTTT-GGA
391 GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATT-TTTTCGGA
*
20431603 AGGAATTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
455 AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AT
* *
20431668 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCTTTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
20431733 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
20431798 GGAGGTTTAATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
20431863 TGCGCACACCCCCCGGCCACCCCGATCGTCAGAACCCCAATGTGGCCGGTCAAGTTCTCCGACGA
714 TGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCGGCCGGTCAGGTTCTCCGACGA
*
20431928 TGGTGCCCCTACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAC
779 TGGTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAC
* * *
20431993 CCTCGATTAGGTCCAATCTTAGACTAGGAATGAACTTCGTATGC
844 CCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
*
20432037 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
* *
20432102 GGCTAGAGGGACGGGATGCACAAGCCGAGGATCAGCAGGGTCCCCCTCTACGTGCTACTGATCTT
66 GGCCAGAGGGACGGGATGCACAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACTGATCTT
* ** * *
20432167 GCTGCTGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTTTGTATCCCTGAGCCAAC
131 GCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
20432232 TGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAG
196 CGACGAAACGAGC---AGG-CGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAG
* * * *
20432297 TCGTGGATTGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGAATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
20432362 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
20432427 ACTCGTTTT
387 ACTCGTTTT
20432436 TGTGAGCATT
Statistics
Matches: 1972, Mismatches: 177, Indels: 51
0.90 0.08 0.02
Matches are distributed among these distances:
883 193 0.10
884 621 0.31
885 5 0.00
886 2 0.00
887 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 325 0.16
892 181 0.09
893 180 0.09
894 2 0.00
895 7 0.00
896 265 0.13
897 186 0.09
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGACGGGATGCACAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACTGATCTT
GCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGACAGACGGGATACGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCGGCCGGTCAGGTTCTCCGACGATG
GTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
TCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:20432046 original size:26 final size:26
Alignment explanation
Indices: 20432010--20432062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20432000 TAGGTCCAAT
*
20432010 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20432036 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20432062 C
1 C
20432063 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20432795 original size:26 final size:26
Alignment explanation
Indices: 20432759--20432814 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20432749 CCAGTCCAAT
20432759 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20432785 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20432811 CTTA
1 CTTA
20432815 AGTCAATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20433147 original size:749 final size:738
Alignment explanation
Indices: 20431695--20433184 Score: 2015
Period size: 749 Copynumber: 2.0 Consensus size: 738
20431685 GTGTACAAGA
*
20431695 TTTTGCGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGCGACCATTTGAAAAAAGTGTCCCCTTTTCACACACTTTAATGGCTACTGGCAGCAAACCT
**
20431760 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTAATGAGGGATAGGGGGCCA
66 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATAGGGGGCCA
*
20431825 ATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGATC
131 ATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCACCCCGATC
** * *
20431890 GTCAGAACCCCAATGTGGCCGGTCAAGTTCTCCGACGATGGTGCCCCTACGAAGAAAAATGCGTC
196 GTCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* ** *
20431955 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATTAGGTCCAATCTTAGACTAG
261 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGATCAGGTCCAATCTTAGACTAG
* * *
20432020 GAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
326 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAA
* * *
20432085 CGTGCGGGCGCTCAGCCGGCTAGAGGGACGGGATGCACAAGCCGAGGATCAGCAGGGTCCCCCTC
391 CGTGCGGGCGCTCAGCCGGCCAGAGGGACAGGATGCACAAGCCGAGGATCAGCAGGGTCACCCTC
* * * * *
20432150 TACGTGCTACTGATCTTGCTGCTGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTT
456 TACGTGCTACCGATCCTACTGCTGCAACCCTCGGGCCCATCCAATCTTAGACTGGGAATGAACTC
** * * * *
20432215 TGTATCCCTGAGCCAACTGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGA
521 CATATCCCTAAGCCAACCGACGAAACGAGCGGGAGGACAGGCGGGCGGGCACTACGCCGGCCAGA
* * *
20432280 CAGACGGGATACGCAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTT
586 CAGACGGGATACGCAACTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
20432345 CTGAATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
651 CTGAATGCCAATGCCATTTTTATAGCTTGTAAATTAATACAACGGTCCCTTAAGCCTTCACGTGA
20432410 AGTTTCATGGCAAGACGACTCGT
716 AGTTTCATGGCAAGACGACTCGT
* *
20432433 TTTTGTGAGCATTTGAAAAAAGTGT-CCCTATTTCACACACTTTAATGGCTACTGGCAGCAAACC
1 TTTTGCGACCATTTGAAAAAAGTGTCCCCT-TTTCACACACTTTAATGGCTACTGGCAGCAAACC
* *
20432497 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCC
65 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATAGGGGGCC
* ** *
20432561 AATATAAGGGCCAAGTATGAGCACCCCTCACACATCATGTGCGCACACCCCCCCGGCC-CCCCTG
130 AATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCACCCC-G
* * * **
20432625 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTG
193 ATCGTCAGAACCCCAATGCCGCCGGTCAAGTTCT-C--CGA-----C---GATGGTGCCCCGACG
* * *
20432690 AAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCA-GT
247 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGAT-CAGGT
* * * *
20432754 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCCGTATGCTTAAGTC
311 CCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
** * * * * *
20432819 AATGCACGAAACAAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATT
376 AACCCACGAAACAAACGTGCGGGCGCTCAGCCGGCCAGAGGGACAGGATGCACAAGCCGAGGATC
* * * * * **
20432884 GGCCGGGTCACCCTCTACGTGCTGCCGATCCTACT-ATCGTAACCCTCGGGCCGGTCTC-ATCTT
441 AGCAGGGTCACCCTCTACGTGCTACCGATCCTACTGCT-GCAACCCTCGGGCCCATC-CAATCTT
* * * *
20432947 AG-CTTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAGGAGCGGGAGGGCAGGCTGGCG
504 AGAC-TGGGAATGAACTCCATATCCCTAAGCCAACCGACGAAACGAGCGGGAGGACAGGCGGGCG
* * *
20433011 GGCACTACTCCGGCCAGAGAGACGGGATGCGCAACT-GTGGATCGATAGGGTGGTAGGTGGGTTT
568 GGCACTACGCCGGCCAGACAGACGGGATACGCAACTCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** * * *
20433075 AGGCACATCTTCATATTTTTGCGTGTCGATGCCATTTTTATGGCTTGTAAATTAATACAACGGTC
633 AGGCACATCTTCATATTTCTGAATGCCAATGCCATTTTTATAGCTTGTAAATTAATACAACGGTC
*
20433140 ACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
698 -CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
20433182 TTT
1 TTT
20433185 CTATTTTTCA
Statistics
Matches: 651, Mismatches: 82, Indels: 27
0.86 0.11 0.04
Matches are distributed among these distances:
737 56 0.09
738 150 0.23
739 1 0.00
741 3 0.00
746 1 0.00
748 85 0.13
749 353 0.54
750 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (738 bp):
TTTTGCGACCATTTGAAAAAAGTGTCCCCTTTTCACACACTTTAATGGCTACTGGCAGCAAACCT
ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAGGGATAGGGGGCCA
ATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCACCCCGATC
GTCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGATCAGGTCCAATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAA
CGTGCGGGCGCTCAGCCGGCCAGAGGGACAGGATGCACAAGCCGAGGATCAGCAGGGTCACCCTC
TACGTGCTACCGATCCTACTGCTGCAACCCTCGGGCCCATCCAATCTTAGACTGGGAATGAACTC
CATATCCCTAAGCCAACCGACGAAACGAGCGGGAGGACAGGCGGGCGGGCACTACGCCGGCCAGA
CAGACGGGATACGCAACTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGAATGCCAATGCCATTTTTATAGCTTGTAAATTAATACAACGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGT
Found at i:20434509 original size:26 final size:26
Alignment explanation
Indices: 20434458--20434510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20434448 CCGGTCTGAT
* **
20434458 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20434484 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20434510 C
1 C
20434511 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20435335 original size:17 final size:17
Alignment explanation
Indices: 20435295--20435335 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
20435285 AAATGAGTCA
*
20435295 CCAGCACATGCCAGAGC
1 CCAGCATATGCCAGAGC
*
20435312 CCAGCATATGCCCGAGC
1 CCAGCATATGCCAGAGC
20435329 CCAGCAT
1 CCAGCAT
20435336 GTGCTGCCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.27, C:0.41, G:0.22, T:0.10
Consensus pattern (17 bp):
CCAGCATATGCCAGAGC
Found at i:20435404 original size:26 final size:26
Alignment explanation
Indices: 20435366--20435418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20435356 TAGGTCCAAT
*
20435366 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20435392 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20435418 C
1 C
20435419 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20436310 original size:27 final size:27
Alignment explanation
Indices: 20436257--20436311 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
20436247 AGGTTCCAAT
*
20436257 CTTAGACTAGGAATGAACTTCGTTATG
1 CTTAGACTAGGAATGAACTCCGTTATG
20436284 CTTAGAACTAGGAATGAACTCCG-TATG
1 CTTAG-ACTAGGAATGAACTCCGTTATG
20436311 C
1 C
20436312 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCGTTATG
Found at i:20436864 original size:907 final size:889
Alignment explanation
Indices: 20433598--20443340 Score: 9669
Period size: 907 Copynumber: 10.9 Consensus size: 889
20433588 CGGTCCGATG
* * * * *
20433598 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCTGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
** * * * * * * * *
20433663 AACCAAAGGGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCCTCTTCTGCGTGCTGTCGATCTT
66 GGCCAGAGGGGCGGGATGCACAAGC-GGGGATCGG-CGGGTCCCCCTCTACGTGCTGCCGATCCT
* * *
20433728 GCTGCCG-TA-CCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
129 GCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
20433791 TGACGAAACGAGCGTGCGGGCGGGC--G-A-GCACTACGCAG-CCAGAGAGACGGGATGCGCAAG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
* * *
20433851 CCGTGGATCGATAGGGTGGTA-GTGGGTTTAAGAACATCTTGATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-
* * ** *
20433915 TTTTTATGGC-TGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAAATTCATGGCAGGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
20433979 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTT-GGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
20434043 CGGAAGCAGTTTTGG-CCTAAACTTGGTAGACGTGATCAC-TGTATTTTTGTTGGCGTGCACAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAA
* * *
20434106 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
517 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-TTT
* * * * * *
20434171 T-AGACACTTTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGAGATGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20434235 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20434300 ATCATGTGCACACACCGGCCCCCCCGGCCCCCCCGATCGTCGGAACCCAAATGTCGCAGGTCAGG
711 ATCATGTGCGCACA-----CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * *
20434365 TTCTCCGACGATGGTGGCCCTG-CGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGTATG
770 TTCTCCGACGATGGT-GCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* ** ** ** *
20434429 TGCTACCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCTTTATGC
834 TGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTC-GTATGC
*
20434485 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* ** *
20434550 GGCCAGAGGGGCGGGATGC-CTAAGCTGGGGATCTGTCGGGTCCCCCTCTGTGTGCTGCCGATCA
66 GGCCAGAGGGGCGGGATGCAC-AAGC-GGGGATC-GGCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
20434614 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
128 TGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
20434679 CCGACGAAACGAGCAGGCGGACGGACGGGCGGGCACTATGTC-AGCCAGAGAGACGGGATGCGGA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGA-CCAGAGAGACGGGATGCGCA
**
20434743 AGCCGTGGATAAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20434808 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *** ** * *
20434873 CGACTCGTTTACTATTTTTCATGATTTCCAAAAC-TTTTACAATTTGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
20434937 TCACG-AGGAGTTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
452 TC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
20435001 AAA-ATTTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCAT
516 AAACA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTT
*
20435065 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20435130 GAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGTA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
20435195 AATCATGTACGCACACCCCCCGGCCACCTCGATCATCGGAACCCCAATGCGGCCGGTCAGGTTCT
710 CATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
20435260 CCGGCGATGGTGCCCCTACGAAGAAAAATGAGTCACCAGCACATGCCAGAGCCCAGCATATGCCC
774 CCGACGATGGTGCCCCGACGAAGAAAAAT--G----C-G-ACA--CC--AG--CA-C--ATGCCC
*
20435325 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTCCGTA
822 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTA
20435390 TGC
887 TGC
*
20435393 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
20435458 GGCCAGAGGGACGGGATGCAGAAGCTGAGGATCAGCCGGGTCCCCCTCTACGTGCTACTGATCCT
66 GGCCAGAGGGGCGGGATGCACAAGC-GGGGATC-GGCGGGTCCCCCTCTACGTGCTGCCGATCCT
* ** * *
20435523 GCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTGAGCCAAC
129 GCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
20435588 CGACGAAACAAGCAGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGACAGACGGGATACGCAAG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
* * * * *
20435653 CCATGGATTGATAGGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTTTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20435718 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
20435783 ACTCGTTTTCTATTTTTCACGATTTTTTAAACCTTTTACGGTTCGAGATTTTTTAAAATTGTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTT
* * * * * * *
20435848 -GGAAGGAATTTTGTCCCTAAAATTGGTAGACATGATCCTTGTATTTTTATTGGCTTGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
20435912 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTC
518 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTC
*
20435977 AGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20436042 TTCTGGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
20436107 CATGTGCGCACACCCCCCGGCCACCCCGATCGTCAGAACCCCAATGTGGCCGATCAAGTTCTCCG
713 CATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
20436172 ACGATGGTGCCCCTACGAAGAAAAATGCGTCACCAGCCCATGCCCGAG-CCAGCATGTGCTGCCG
777 ACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
20436236 TAA-CCTCGATTAGGTTCCAATCTTAGACTAGGAATGAACTTCGTTATGC
842 CAACCCTCGGTTAGG-TCCAATCTTAGACTGGGAATGAACTTCG-TATGC
*
20436285 TTAGAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 TTAG-ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20436350 C-GCCAGAGGGACGGGAATGCACAAGTCGAGGATCAGCAGGGGTCCCCCTCTACGTGCTAACTGA
65 CGGCCAGAGGGGCGGG-ATGCACAAG-CGGGGATCGGC--GGGTCCCCCTCTACGTGCT-GCCGA
* **
20436414 TCCTGCTGCCGCAAAACCCTCGGTTCGCATCCAAATCTTAGACTGGGAAATGAACTTTGTAT-CC
125 TCCTGCTGCCGC--AACCCTCGGTTCG-GTCC-AATCTTAGACTGGG-AATGAACTCCGTATGCC
* * * *
20436478 TTGAG-CAACTGACGAAACGAGGCGGGCGCGACGGGCGGGCAGGCACTACGCCGACCAGACAGAC
185 -TAAGCCAACCGACGAAACGA-GCGGGCG-GGCGGGCGGGCAGGCACTACGCCGACCAGAGAGA-
* * * *
20436542 CGGGATACGCAAGTCGTTGGATTGATAAGGGGTGGTAGGTGGGTTTGGGCACATACTTCATATTT
246 CGGGATGCGCAAGCCG-TGGATCGAT-A-GGGTGGTAGGTGGGTTTAGGCACAT-CTTCATATTT
* *
20436607 ACTGAATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
307 -CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
20436672 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGATTCGAG
371 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAG
* *
20436737 ATTTTTTAAAATTGTTTT-GGAAGGAATTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTT
436 ATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
20436801 TTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
500 TTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
20436866 AAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGC
565 AAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
20436931 TCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTA
630 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
20436996 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCTAATGC
695 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGC
* * * *
20437061 TGCTGGTCAGGTTCTCCGACGATGGTGCCCCTACGAAGAAAAATGCGTCACCAGCACATGCCCGA
759 CGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGA
*
20437126 GCCCAGCATGTGCTGCCGCAACCCACGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
824 GCCCAGCATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
20437191 C
889 C
* ** *
20437192 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * ** * *
20437257 GGCCAGAAGGAG-GGGATGCACAAGCCGAGGATCAGTTGGGTCCCCCTCTACGTGCTACTGATCC
66 GGCCAG-AGGGGCGGGATGCACAAG-CGGGGATC-GGCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * ** ** *
20437321 TACTGCCTCAACCCTCGATCCCATCCAATCTTAGACTGGGAATGAACTCTATATGCCTGAGCCAA
128 TGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20437386 CCGACGAAACAAGCAGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGACAGACGGGATACGCAA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * * * *
20437451 GCCATGGATTGATAGGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTTTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20437516 TTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
20437581 GACTCGTTTTCTATTTTTCACGATTTTTTAAACCTTTTACGGTTCGAGATTTTTTAAAATTGTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTT
* * * * * * *
20437646 T-GGAAGGAATTTTGTCCCTAAAATTGGTAGACATGATCCTTGTATTTTTATTGGCTTGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
20437710 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTT
517 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTT
20437775 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20437840 CTT-TCGGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGTAC
647 GTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
20437904 ATCATGTGCGCACA-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCC
711 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-T-T--
* * * *
20437968 GACGATGCACCGACGATGGTGCCCCGACGAAAAAAAATGTGGCACCAACACATGCCCGAGCCCAG
772 --C--T---CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * * ** * *
20438033 CATGTGCTGCCGTAACCCTTGCTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGC
830 CATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
* * *
20438093 TTATACTAAGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** *
20438158 GGCCATAGGTGCGGGATGCGCAAGCTGGGGATCGGCCGGGT-CCCCTCTGCGTGCTATCGATCAT
66 GGCCAGAGGGGCGGGATGCACAAGC-GGGGATCGG-CGGGTCCCCCTCTACGTGCTGCCGATCCT
* * *
20438222 GCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAAC
129 GCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** ** * *
20438287 CGACGAAACGAGCGTACGGTTGGGC--G-A-GCACTACGCC-AGCCAGAGAGACGGGATGCACAT
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAA
*
20438347 GCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
20438412 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
20438477 AACACGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
20438542 CGGAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
20438606 ACAATTCAGGTAAAAATTTGAAGTGTGCAAGATTTTGTGTCCATTTGAAAAAAGTGT-CTCTATT
518 AC-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCT-TT
* * * * *
20438670 TCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGCGAGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20438735 AGTGTCTCGAGGTTTGATGAAGGGAATAGGGGGCC-ATATAAGGGCCAAGTACCAGCACCCATCC
646 AGT-TCTCGAGGTTTGATG-AGGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-C
* * * *
20438799 GCACATCATGTGCGGCCACCCCCCACCGGCCGCCCGATCGCCGGAACCCCCAATGCCACCGGATC
707 GCACATCATGTGC-G-CACACCCC-CCGGCCCCCCGATCGTCGGAA-CCCCAATGCCGCCGG-TC
* ** *
20438864 AAGTATCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGACACCGGCACATGC
767 ----A-----G--G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC
* * * * *
20438929 CCGAGCCCAGCACGTGCTTCCGTAACCCTTGGTGCA-GTCCAATCTTAGACTGGGAATGAACTAT
820 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-TAGGTCCAATCTTAGACTGGGAATGAACT-T
20438993 -GTATGC
883 CGTATGC
* * * * * *
20438999 TTAGACTGGGAATGTACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
20439064 GGCCAGAGGGGCCGGATGCGCAAGCCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCACAAG-CGGGGATCGG-CGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * * * *
20439129 GTTGCTGCAACCCTCAG-TCAGGTCCGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAA
129 GCTGCCGCAACCCTCGGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20439193 CCGACGAAACGAGCGGGCGGGC-GG-GTG--GGCACTACACCGACCAGAGAGACGGGATGTGCAA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
20439254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20439319 TTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * * *
20439384 GACTCGTTTTCTATTTTTCACGATTTTGGAGACTTTTTAAGGTTCGAGATTTTTTTAACTTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
20439449 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCACGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
20439514 ACATTCAGCTAAAAACGCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTC
518 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTC
** * *
20439579 AGACACTTTAATGGCTGTTGGCAGCATACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20439644 TTCTCGAGGTTTGATGAGGGATAGGAGTCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
20439709 CATTTGCGCACACCCCCCGGCCCCCCCGA-CTGTCGGAACCACAATGCCACCGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCGG-CCCCCCGATC-GTCGGAACCCCAATGCCGCCGGTCAGG---T--
* * *
20439773 GACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAG
771 -----T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * * * *
20439838 CATGTGCTGCCACAAACCTCGGTCT-GGGCCGATCTTAGACTGGGAATGAA-TTCCATATGC
830 CATGTGCTGCCGCAACCCTCGGT-TAGGTCCAATCTTAGACTGGGAATGAACTT-CGTATGC
* * *
20439898 TT-GACTAGGAATGAACTCTGTATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * ** *
20439962 GGCCAGA-GGGTGGGATGCGCAAGTCGCTGATGGGTCGGG-CAACCCCT-TACGTGCTGCCGATC
66 GGCCAGAGGGGCGGGATGCACAAG-CGGGGATCGG-CGGGTC--CCCCTCTACGTGCTGCCGATC
* * * ** * ***
20440024 TTGCTGCTGTAACCCTTAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
127 CTGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20440089 ACCGACGAAACGA----GCGGACGGGC--G--GGCACTACGCCGGCCAGAGAGATGGGATGCGTA
192 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* * * **
20440146 AACCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
20440211 ATTTTAATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** ** *
20440276 CGACTCGTTTTCTATTTTTCA-TAATTTTTAAAAATTTTGGGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
20440340 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCATAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
20440405 AAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGATCATTTGAAAAAAGTGT-CCCATTT
517 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTT
* * * *
20440469 CAGACACTTTAATGGCTGCTGGCAGTATACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
20440534 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATTGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
20440599 TCATGTGTGCACACCCCCCGGCCCCCCTAATCGTCGGAACCCCATTGCCGCCGGTCAAGTTCTCC
712 TCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
20440664 GGAGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATTCCAGAGCCCAG
776 ---GA--------CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * * *
20440729 CATGTGTTGCCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGAGGAATGAACTCCGTATGC
830 CATGTGCTGCCGCAACCCTCGGT-TAGGTCCAATCTTAGACTG-GGAATGAACTTCGTATGC
* *
20440790 TTAGAC-AGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 TTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
20440854 CGGCTAGAGGGGCGGGATGCATAAACCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCA-CAAGCGGGGATCGG-CGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
20440919 TGCTACCGTAACCTTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
128 TGCTGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ** * * *
20440984 CCAACGAAACGACCGTGTGAGGCAGGCGGGCGGGCACTACATCGGCCAGTGAGATGGGATGCGCA
193 CCGACGAAACGAGCGGGCG-GGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* *
20441049 AGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20441114 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *** * * * *
20441179 CGACTCGTTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGACAC-TTTAATGGCTACTGGCA
387 CGACTCG-TTT-T--CTATTT--------T-TCACGATTTTTTAAACTTTTTACGG-T--TCG-A
*** * * * * * * ** * *
20441243 GCAAACCTGTAAAATCTCAAATGCTCTTC--AAGGGGGTGTGAGTTCTCAAGGTTTG-ATGA-GG
435 G--ATTTTTTAAAAT-T----T--T-TTCGGAAGGAGTTTTG-G-CCCCAAACTTGGTA-GACGT
**** * * ** * * * ** * * *
20441304 GATAGGGGGCCAATATAAG--GGCCAAGTACCAGCACCCA-TC-GC---ACA-TC-ATGTGTGCA
487 GAT-CCTTG--TATTTTTGTTGG-CATGCA-CA-AAAACATTCAGCTAAAAACTCGAAGTGTACA
****** **** * ** ** * * * * *
20441360 CACCCCCCG-G-CCCCCCGATCACCA--GAACCCTAATGCCGTCGGTCAGTTCT-CTGGCTATGC
546 -AGATTTTGTGACCATTTGA-AAAAAGTGTCCCCT--T---TTCAGACACTT-TAATGGCTA--C
* **** *** *** * * **** * * *
20441420 TCCGACGATGGTGCCCTGGCGAA-GAAAAATTTAGCAC---CAGCACATGCCCGAG--C-CCAGC
601 T--GGC-A-GCAAACCTGTAAAATCTCAAA--T-GCTCTTTAAGGGGGTG--TGAGTTCTCGAGG
* ** * ** * * * * ** ** * *** * * *
20441478 TTGTGCTGCCGCA-ACCCTTGGTCCAGTCTAA--TCTTAG-ACTGGGAATGAACTC-CGT-ATGC
657 TT-TGATGAGGGATA---GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-
** * *** *** ** * *
20441537 CTAAGTCAAACCATGAAACGAG-CGTGCGGGCGCTC--AACCGGCCAATG--G--GGT-GGGAT-
717 -TGCG-CACACC---CCCCG-GCCCCCCGATCG-TCGGAACC--CCAATGCCGCCGGTCAGGTTC
* * ** *** * ** * * * *
20441593 GCC-AAGCCGG-GGATCGACCG--G----GT-C--C-CCCTCTACGTG--C-TG-TC-G-ATCCT
773 TCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGC-ACATGCCCGAGCCCAGCAT-GT
* *** * *
20441640 GCTGCCGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
835 GCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
* * * * * **** * *** * *** *
20441695 CTA-AGCGAACCG-ACGAA--ACG-A-GCGGGCGGGC-GGGCAGGCGGCGGGCAG-GCGGGCGAG
1 TTAGA-C-TA-GGAATGAACTCCGTATGC-CTAAGTCAACCCATGAAACGAGC-GTGCGGGC--G
* * * * * * * ** * *
20441752 CACTACGCCTGTCAGAGAGACGGGATGCGCATTGGCACGCAGAAATATGG-GATGTGCCTAAACC
59 CTC-A-GCCGGCCAGAGGGGCGGGAT--GCA----CAAGCGGGGAT-CGGCG-GGT-CC----CC
* * ** * * ** *
20441816 CACCTACCGT-ATGCTTAATCTTAGACTG--GGAA---T--GAAC--TCCGTATGCTTAGACTGG
109 C-TCTA-CGTGCTGC-CGATCCT-G-CTGCCGCAACCCTCGGTTCGGTCC-AAT-CTTAGACTGG
*
20441871 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---AGGGCGGGC--G--GGCACTAC
167 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTAC
* * * * *
20441929 GCCGGCTAGAGAGACGGGATACGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCATAT
232 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20441994 CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAACC
297 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
20442059 CTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT-
362 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTA
* * * *
20442123 GGGTTCGAGATTTTTTAAAATTTATTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
427 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
20442188 TTGTATTTCTGTTGGCATGCATAAAAAAAGTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGA
492 TTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
20442253 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
557 CCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
20442318 TCAAATGCTCTTTAATGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
622 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
20442383 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCCCCGATCGTCGGAACC
687 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACC
* *
20442448 CTAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCGCGACGAAGAAAAATGCG
752 CCAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * ** *
20442513 GCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACT
806 ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACT
*
20442578 -GGAATAAAC-TCTGTATGC
871 GGGAATGAACTTC-GTATGC
* * * * * * * *
20442596 TTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCA-CAAATGAGCATGTGGGTGCTCAACC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
** **
20442660 GGCCAGAGGGGCGGGATGGGCAAGACGGGGATCAATCGGG--CCCC-C--C-T-CTG-CG----T
66 GGCCAGAGGGGCGGGATGCACAAG-CGGGGATC-GGCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * * * *
20442713 GCTGCCACAACCCTC-GATCTGGTGCTATCTTAGACTGGAAATGAACTCCATATGCCTAAGCCAA
129 GCTGCCGCAACCCTCGGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20442777 CCGACGAAACGAGCGGGCGGGCAGGCGGG-TGGTCACTACGCCAACCAGAGAGACAGGATGCGCA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAGG-CACTACGCCGACCAGAGAGACGGGATGCGCA
* * * * **
20442841 AGCCGTGGATTGATAGGGTTGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20442906 ATTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 A-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
20442971 ACGAATCGTTTTCAATTTTTCACG-TTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
*
20443034 TTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
20443099 AAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAACATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCT
* * *
20443164 TTTCAAACACTTTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20443229 TGAGTTCTCGAGGTTTGATGAGGGATAGGTGG-CAATATAAGGGCCAAGTACCAGCATCCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** * ** *
20443293 ACATGATGTGCACGCAGGCCTCGGCCCCCCGATCACCGAAACCCCAAT
709 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
20443341 CCTACCTGTA
Statistics
Matches: 7434, Mismatches: 1041, Indels: 761
0.80 0.11 0.08
Matches are distributed among these distances:
870 7 0.00
871 9 0.00
872 18 0.00
873 10 0.00
874 26 0.00
875 24 0.00
876 9 0.00
877 11 0.00
878 17 0.00
879 20 0.00
880 62 0.01
881 11 0.00
882 14 0.00
883 13 0.00
884 4 0.00
885 4 0.00
886 11 0.00
887 221 0.03
888 269 0.04
889 197 0.03
890 55 0.01
891 378 0.05
892 610 0.08
893 343 0.05
894 213 0.03
895 186 0.03
896 607 0.08
897 154 0.02
898 143 0.02
899 199 0.03
900 161 0.02
901 276 0.04
902 99 0.01
903 207 0.03
904 64 0.01
905 259 0.03
906 350 0.05
907 994 0.13
908 499 0.07
909 361 0.05
910 10 0.00
911 14 0.00
912 6 0.00
913 49 0.01
914 2 0.00
915 2 0.00
916 12 0.00
917 12 0.00
918 11 0.00
919 6 0.00
920 7 0.00
922 8 0.00
923 1 0.00
924 1 0.00
925 6 0.00
926 10 0.00
927 7 0.00
928 11 0.00
929 6 0.00
930 27 0.00
931 7 0.00
932 14 0.00
933 6 0.00
934 19 0.00
935 23 0.00
936 12 0.00
937 15 0.00
938 14 0.00
939 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCACAAGCGGGGATCGGCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TGCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTTAGGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
Found at i:20437203 original size:26 final size:26
Alignment explanation
Indices: 20437165--20437217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20437155 TAGGTCCAAT
*
20437165 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
20437191 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
20437217 C
1 C
20437218 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:20438095 original size:26 final size:26
Alignment explanation
Indices: 20438066--20438118 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438056 CCGGTCCAAT
**
20438066 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
* *
20438092 CTTATACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCATATG
20438118 C
1 C
20438119 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:20438639 original size:896 final size:897
Alignment explanation
Indices: 20433591--20441189 Score: 9677
Period size: 907 Copynumber: 8.5 Consensus size: 897
20433581 CTCGGTCCGG
* * * * *
20433591 TCCG-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCTGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
** * * * * *
20433654 CGCTCAGCCAACCAAAGGGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCCTCTTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * *
20433719 GTCGATCTTGCTGCCG-TA-CCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
131 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
20433782 TAAGCCAACTGACGAAACGAGCGTGCGGGCGGGCGAGCACTACG-CAGCCAGAGAGACGGGATGC
196 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
20433846 GCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAAGAACATCTTGATATTTCTGCATGCCAAT
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * **
20433910 GCCATTTTTTATGGC-TGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAAATTCATGGC
326 GCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
20433974 AGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTT-GGGATTTTTTAAAAT
390 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * *
20434038 TTTTTCGGAAGCAG-TTTTGGCCTAAACTTGGTAGACGTGATCAC-TGTATTTTTGTTGGCGTGC
455 TTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGC
* * *
20434101 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCC
519 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
20434166 CATTTT-AGACACTTTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGAG
584 C-TTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
20434230 ATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCAT
648 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCAT
* * *
20434295 CGCACATCATGTGCACACACCGGCCCCCCCGGCCCCCCCGATCGTCGGAACCCAAATG-TCGCAG
713 CGCACATCATGTGCGCACA-----CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCT-GCCG
* *
20434359 GTCAGGTTCTCCGACGAT----G--G-T-G-GCCCTG-CGAAGAAAAATGTGACACCAGCACATG
771 GTCAGGTTCTCCGACGATGCCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * ** * **
20434414 CCCGAGCCCAGTATGTGCTACCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
836 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAAC
** *
20434476 TCTTTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* **
20434541 CGCTCAGCCGGCCAGAGGGGCGGGATGC-CTAAGCTGGGGATCTGTCGGGTCCCCCTCTGTGTGC
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * * ** *
20434605 TGCCGATCATGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGC
130 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
20434670 CTAAGCCAACCGACGAAACGAGCAGGCGGACGGACGGGCGGGCACTATGTCAGCCAGAGAGACGG
195 CTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGG
* **
20434735 GATGCGGAAGCCGTGGATAAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
256 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
20434800 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
321 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *** ** * *
20434865 TTGCAAGACGACTCGTTTACTATTTTTCATGATTTCCAAAAC-TTTTACAATTTGGGATTTTTTA
386 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* *
20434929 AAATTTTTTCACG-AGGAGTTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
451 AAATTTTTTC-GGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
20434993 ATGCACAAAAA-ATTTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTAGAAAAAAGT
515 ATGCACAAAAACA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
20435057 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAA
579 GTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
20435122 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAGAAGGGCCAAGTACCAGCAC
644 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCAC
* * * * * *
20435187 CCATCGTAAATCATGTACGCACACCCCCCGGCCACCTCGATCATCGGAACCCCAATGCGGCCGGT
709 CCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCTGCCGGT
* * * * *** * * * *
20435252 CAGGTTCTCCGGCGATGGTGCCCCTACGAAGAAAAATGAGTC-AC-CAG-CACATGCCAGAGC-C
773 CAGGTTCTCCGACGA---TG-CCCGACGATG----GTGCCCCGACGAAGAAAAATG--TG-GCAC
* *
20435313 CAGCATATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTAGGTCCAATCTTAGACTGGGA
827 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGA
20435378 ATGAAC
892 ATGAAC
*
20435384 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * *
20435449 CGCTCAGCCGGCCAGAGGGACGGGATGCAG-AAGCTGAGGATCAGCCGGGTCCCCCTCTACGTGC
66 CGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * ** *
20435513 TACTGATCCTGCTGCCGCAACCCTCGGTCCCATCCAATCTTAGACTGGGAATGAACTCTGTATGC
130 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* *
20435578 CTGAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGGC-AGGCACTACGCCGGCCAGACAGACG
195 CTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGA-GCACTACGCCGGCCAGAGAGACG
* * * * * *
20435642 GGATACGCAAGCCATGGATTGATAGGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTTTGCAT
255 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
20435707 GCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
320 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
20435772 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACCTTTTACGGTTCGAGATTTTTT
385 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
* * * * *
20435837 AAAATTGTTTT-GGAAGGA-ATTTTGTCCCTAAAATTGGTAGACATGATCCTTGTATTTTTATTG
450 AAAATT-TTTTCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
20435900 GCTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
513 GCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
20435965 TGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTA
578 TGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
20436030 AGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCCAAGTACCAGCA
643 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCA
*
20436095 CCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGATCGTCAGAACCCCAATG-TGGCCG
708 CCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCT-GCCG
* * * * * *
20436159 ATCAAG-T-T----C--T--CCGACGATGGTGCCCCTACGAAGAAAAATGCGTCACCAGCCCATG
771 GTCAGGTTCTCCGACGATGCCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * * *
20436214 CCCGAG-CCAGCATGTGCTGCCGTAA-CCTCGATTAGGTTCCAATCTTAGACTAGGAATGAAC
836 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGG-TCCAATCTTAGACTGGGAATGAAC
* *
20436275 TTCGTTATGCTTAGAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
1 TCCG-TATGCTTAG-ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * *
20436340 GGCGCTCAGCC-GCCAGAGGGACGGGAATGCACAAG-TCGAGGATCAG-CAGGGGTCCCCCTCTA
64 GGCGCTCAGCCGGCCAGAGGGGCGGG-ATGCGCAAGCT-GGGGATCGGTC--GGGTCCCCCTCTA
* * * *
20436402 CGTGCTAACTGATCCTGCTGCCGCAAAACCCTCGGTTCGCATCCAAATCTTAGACTGGGAAATGA
125 CGTGCT-GCCGATCCTGCTGCCGC--AACCCTCGGTCCG-GTCC-AATCTTAGACTGGG-AATGA
** * * *
20436467 ACTTTGTAT-CCTTGAG-CAACTGACGAAACGAGGCGGGCGCGACGGGCGGGCAGGCACTACGCC
184 ACTCCGTATGCC-TAAGCCAACCGACGAAACGA-GCGGGCG-GGCGGGC--G-A-GCACTACGCC
* * * * * *
20436530 GACCAGACAGACCGGGATACGCAAGTCGTTGGATTGATAAGGGGTGGTAGGTGGGTTTGGGCACA
242 GGCCAGAGAGA-CGGGATGCGCAAGCCG-TGGATCGAT-A-GGGTGGTAGGTGGGTTTAGGCACA
* *
20436595 TACTTCATATTTACTGAATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
303 T-CTTCATATTT-CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
20436660 AGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTTAAACTTT
366 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
20436725 TTACGATTCGAGATTTTTTAAAATTGTTTT-GGAAGGAATTTTGGCCCTAAACTTGGTAGACGTG
431 TTACGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTG
20436789 ATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
495 ATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
20436854 GTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAA
560 GTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20436919 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATAG
625 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAG
20436984 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGATCGTCG
690 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCG
* * *
20437049 GAACCCTAATGCTGCTGGTCAGG-T-T----C--T--CCGACGATGGTGCCCCTACGAAGAAAAA
754 GAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCCCGACGATGGTGCCCCGACGAAGAAAAA
* * * *
20437104 TGCGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCACGGTTAGGTCCAATCTTA
819 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTA
20437169 GACTGGGAATGAAC
884 GACTGGGAATGAAC
* * **
20437183 TTCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * * * * *
20437248 CGTTCAGCCGGCCAGAAGGAG-GGGATGCACAAGCCGAGGATCAGTTGGGTCCCCCTCTACGTGC
66 CGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * * * * ** **
20437312 TACTGATCCTACTGCCTCAACCCTCGATCCCATCCAATCTTAGACTGGGAATGAACTCTATATGC
130 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* *
20437377 CTGAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGGC-AGGCACTACGCCGGCCAGACAGACG
195 CTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGA-GCACTACGCCGGCCAGAGAGACG
* * * * * *
20437441 GGATACGCAAGCCATGGATTGATAGGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTTTGCAT
255 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
20437506 GCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
320 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
20437571 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACCTTTTACGGTTCGAGATTTTTT
385 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
* * * * *
20437636 AAAATTGTTTT-GGAAGGA-ATTTTGTCCCTAAAATTGGTAGACATGATCCTTGTATTTTTATTG
450 AAAATT-TTTTCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
20437699 GCTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
513 GCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
20437764 TGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
578 TGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
20437829 AGGGGGTGTGACTT-TCGGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGC
643 AGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGC
* *
20437893 ACCCATCGTACATCATGTGCGCACA-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCTGCCGG
707 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCTGCCGG
* *
20437957 TCAGGTTCTCCGACGATGCACCGACGATGGTGCCCCGACGAAAAAAAATGTGGCACCAACACATG
772 TCAGGTTCTCCGACGATGC-CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * * *
20438022 CCCGAGCCCAGCATGTGCTGCCGTAACCCTTGCTCCGGTCCAATCTTAGACTGGGAATGAAC
836 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAAC
* * * *
20438084 TCCATATGCTTATACTAAGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * *
20438149 CGCTCAGCCGGCCATAGGTGCGGGATGCGCAAGCTGGGGATCGGCCGGGT-CCCCTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCT
** * *
20438213 ATCGATCATGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
131 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* ** ** *
20438278 TACGCCAACCGACGAAACGAGCGTACGGTTGGGCGAGCACTACGCCAGCCAGAGAGACGGGATGC
196 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
20438343 ACATGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20438408 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
326 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
20438473 AGACAACACGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATT
391 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* *
20438538 TTTTCGGAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTATTGGCATGCAC
456 TTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * * *
20438603 -AAAACAATTCAGGTAAAAATTTGAAGTGTGCAAGATTTTGTGTCCATTTGAAAAAAGTGT-CTC
521 AAAAAC-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * *
20438666 TATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGCGAG
585 T-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
20438731 TGTGAGTGTCTCGAGGTTTGATGAAGGGAATAGGGGGCC-ATATAAGGGCCAAGTACCAGCACCC
649 TGTGAGT-TCTCGAGGTTTGATG-AGGG-ATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCC
* * * **
20438795 ATCCGCACATCATGTGCGGCCACCCCCCACCGGCCGCCCGATCGCCGGAACCCCCAATGCCACCG
711 AT-CGCACATCATGTGC-G-CACACCCC-CCGGCCCCCCGATCGTCGGAA-CCCCAATGCTGCCG
* * * *
20438860 GATCAAGTATCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGACACCGGCAC
771 G-TCAGGT-TCTCCGACGATGC-CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * *
20438925 ATGCCCGAGCCCAGCACGTGCTTCCGTAACCCTTGGTGCA-GTCCAATCTTAGACTGGGAATGAA
833 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CAGGTCCAATCTTAGACTGGGAATGAA
20438989 C
897 C
** * * * * *
20438990 TATGTATGCTTAGACTGGGAATGTACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTACGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * * *
20439055 CGCTCAACCGGCCAGAGGGGCCGGATGCGCAAGCCGTGGATCGGTCGGGTCCCCCTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * * * * *
20439120 GCCGATCCTGTTGCTGCAACCCTCAGTCAGGTCCGATCTTAGACTAGGAATGAACTCCCTATGCC
131 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
20439185 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACACCGACCAGAGAGACGGGATGT
196 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
20439250 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
261 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
20439315 GCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
326 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
20439380 AGACGACTCGTTTTCTATTTTTCACGATTTTGGAGACTTTTTAAGGTTCGAGATTTTTTTAACTT
391 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
20439445 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCACGCAC
456 TTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
20439510 AAAAACATTCAGCTAAAAACGCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCA
521 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCT
** * *
20439575 TTTCAGACACTTTAATGGCTGTTGGCAGCATACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTG
586 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
20439640 TGAGTTCTCGAGGTTTGATGAGGGATAGGAGTCCAATATAAGGGCCAAGTACCAGCACCCATCGT
651 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGC
* * **
20439705 ACATCATTTGCGCACACCCCCCGGCCCCCCCGA-CTGTCGGAACCACAATGCCACCGGTCAGGTT
716 ACATCATGTGCGCACACCCCCCGG-CCCCCCGATC-GTCGGAACCCCAATGCTGCCGGTCAGGTT
* * *
20439769 CTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
779 CTCCGACGATGC-CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * * *
20439834 CCAGCATGTGCTGCCACAAACCTCGGTCTGGGCCGATCTTAGACTGGGAATGAAT
843 CCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAAC
* * * *
20439889 TCCATATGCTT-GACTAGGAATGAACTCTGTATGCCTAAGTCAACACATGAAACGAGTGTGCGGG
1 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* ** *
20439953 CGCTCAGCCGGCCAGA-GGGTGGGATGCGCAAG-TCGCTGATGGGTCGGG-CAACCCCT-TACGT
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTC--CCCCTCTACGT
* * * ** ***
20440014 GCTGCCGATCTTGCTGCTGTAACCCTTAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
128 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
20440079 GCCTAAGCCAACCGACGAAACGAGCGGACGGGC--G-G-GCACTACGCCGGCCAGAGAGATGGGA
193 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGA
* * * * **
20440140 TGCGTAAACCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTTTGTGTGCC
258 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
20440205 AATGCCATTTTAATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATG
323 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** ** ** *
20440270 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTT-AAAAATTTTGGGGTTCGGGATTTTTTAAA
388 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* *
20440334 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGTTCCTTGTATTTTTGTTGGCATG
453 ATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
20440399 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGATCATTTGAAAAAAGTGT-C
518 CACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
20440463 CCATTTCAGACACTTTAATGGCTGCTGGCAGTATACCTGCAAAATCTCAAATGCTCTTTAAGGGG
583 CCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
20440528 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCAT
648 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCAT
* * * * * *
20440593 TGCACATCATGTGTGCACACCCCCCGGCCCCCCTAATCGTCGGAACCCCATTGCCGCCGGTCAAG
713 CGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCTGCCGGTCAGG
* * * * *
20440658 TTCTCCGGA-GATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATTCCAG
777 TTCTCC-GACGATGC-CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* * * *
20440722 AGCCCAGCATGTGTTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGAGGAATGAAC
840 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTG-GGAATGAAC
* *
20440781 TCCGTATGCTTAGAC-AGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGG
1 TCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* ** * * *
20440845 GCGCTCAGCCGGCTAGAGGGGCGGGATGCATAAACCGGGGATCGGCCGGGTCCCCCTCTACGTGC
65 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGC
* * * * ** *
20440910 TGCCGATCCTGCTACCGTAACCTTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
130 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * ** * *
20440975 CTAAGCCAACCAACGAAACGACCGTGTGAGGCAGGCGGGCGGGCACTACATCGGCCAGTGAGATG
195 CTAAGCCAACCGACGAAACGA----GCG-GGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACG
* *
20441040 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCGT
255 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
20441105 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
320 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
20441170 ATGGCAAGACGACTCGTTTT
385 ATGGCAAGACGACTCGTTTT
20441190 GTGACCATTT
Statistics
Matches: 5959, Mismatches: 597, Indels: 298
0.87 0.09 0.04
Matches are distributed among these distances:
885 2 0.00
886 4 0.00
887 118 0.02
888 1 0.00
889 61 0.01
890 50 0.01
891 382 0.06
892 601 0.10
893 344 0.06
894 213 0.04
895 184 0.03
896 627 0.11
897 168 0.03
898 129 0.02
899 183 0.03
900 138 0.02
901 239 0.04
902 55 0.01
903 201 0.03
904 49 0.01
905 79 0.01
906 311 0.05
907 985 0.17
908 507 0.09
909 318 0.05
910 7 0.00
911 1 0.00
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCT
GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCT
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCT
CCGACGATGCCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAAC
Found at i:20439022 original size:26 final size:26
Alignment explanation
Indices: 20438972--20439024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438962 GCAGTCCAAT
*
20438972 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
20438998 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20439024 C
1 C
20439025 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20440804 original size:26 final size:27
Alignment explanation
Indices: 20440762--20440815 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
20440752 CTGGTCCGAT
* *
20440762 CTTAGACTGAGGAATGAACTCCGTATG
1 CTTAGACAGAGGAATGAACTCCATATG
20440789 CTTAGACAG-GGAATGAACTCCATATG
1 CTTAGACAGAGGAATGAACTCCATATG
20440815 C
1 C
20440816 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (27 bp):
CTTAGACAGAGGAATGAACTCCATATG
Found at i:20441871 original size:26 final size:26
Alignment explanation
Indices: 20441835--20441887 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20441825 TATGCTTAAT
20441835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20441861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20441887 C
1 C
20441888 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20443443 original size:10 final size:9
Alignment explanation
Indices: 20443428--20443467 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
20443418 TTACTTTGTA
*
20443428 TTTTTTTCC
1 TTTTTTTCT
20443437 TTTTTTTCT
1 TTTTTTTCT
20443446 TTTTTTTCGT
1 TTTTTTTC-T
*
20443456 TTCTTTTCT
1 TTTTTTTCT
20443465 TTT
1 TTT
20443468 GTATTTTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:20443452 original size:19 final size:19
Alignment explanation
Indices: 20443428--20443467 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
20443418 TTACTTTGTA
20443428 TTTTTTTCCTTT-TTTTCT
1 TTTTTTTCCTTTCTTTTCT
*
20443446 TTTTTTTCGTTTCTTTTCT
1 TTTTTTTCCTTTCTTTTCT
20443465 TTT
1 TTT
20443468 GTATTTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTTTTTCCTTTCTTTTCT
Found at i:20443525 original size:4 final size:4
Alignment explanation
Indices: 20443472--20443606 Score: 50
Period size: 4 Copynumber: 32.8 Consensus size: 4
20443462 TCTTTTGTAT
* * *
20443472 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
* * *
20443519 TTTA TTTA TTT- TTCTA TTAATA TTTA TATGTA TTTTA TTTA TATA GTTC
1 TTTA TTTA TTTA TT-TA TT--TA TTTA T-T-TA -TTTA TTTA TTTA TTTA
* *
20443568 TATA TTTA TTATA TATTA -TAA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTT
20443607 TTCTTGTAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 32
0.67 0.12 0.22
Matches are distributed among these distances:
3 16 0.16
4 58 0.59
5 15 0.15
6 8 0.08
7 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:20443542 original size:32 final size:31
Alignment explanation
Indices: 20443480--20443560 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 31
20443470 ATTTTATGTA
20443480 TTTTATTATTTA-TTATTATTATATGTATAT
1 TTTTATTATTTATTTATTATTATATGTATAT
* *
20443510 TTTTACTTATTTATTTATTTTTCTAT-TAATAT
1 TTTTA-TTATTTATTTATTATTATATGT-ATAT
*
20443542 TTATATGTATTTTATTTAT
1 TTTTAT-TA-TTTATTTAT
20443561 ATAGTTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
30 5 0.12
31 9 0.21
32 20 0.47
33 9 0.21
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (31 bp):
TTTTATTATTTATTTATTATTATATGTATAT
Found at i:20444193 original size:11 final size:11
Alignment explanation
Indices: 20444177--20444212 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
20444167 ATCCCAGAAA
*
20444177 CCGGTGACCTT
1 CCGGTGAACTT
20444188 CCGGTGAACTT
1 CCGGTGAACTT
20444199 CCGGTGAACTT
1 CCGGTGAACTT
20444210 CCG
1 CCG
20444213 ACGAAAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.14, C:0.33, G:0.28, T:0.25
Consensus pattern (11 bp):
CCGGTGAACTT
Found at i:20444512 original size:15 final size:15
Alignment explanation
Indices: 20444488--20444518 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
20444478 GCCCCCCTCG
20444488 GAGCCAAGCCGAGCT
1 GAGCCAAGCCGAGCT
*
20444503 GAGCCGAGCCGAGCT
1 GAGCCAAGCCGAGCT
20444518 G
1 G
20444519 CGATACGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.32, G:0.39, T:0.06
Consensus pattern (15 bp):
GAGCCAAGCCGAGCT
Found at i:20444574 original size:25 final size:25
Alignment explanation
Indices: 20444546--20444602 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
20444536 GGTTTTTTTT
20444546 TTTGAATTTTTT-TTATTTTCATTTA
1 TTTG-ATTTTTTGTTATTTTCATTTA
* * *
20444571 TTTGTTTTTTTGTTTTTTTTATTTA
1 TTTGATTTTTTGTTATTTTCATTTA
*
20444596 TTAGATT
1 TTTGATT
20444603 AGGTTTATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (25 bp):
TTTGATTTTTTGTTATTTTCATTTA
Found at i:20444591 original size:21 final size:22
Alignment explanation
Indices: 20444553--20444594 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
20444543 TTTTTTGAAT
20444553 TTTTTTTATTTTCATTTATTTG
1 TTTTTTTATTTTCATTTATTTG
* *
20444575 TTTTTTTGTTTT-TTTTATTT
1 TTTTTTTATTTTCATTTATTT
20444595 ATTAGATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.02, G:0.05, T:0.83
Consensus pattern (22 bp):
TTTTTTTATTTTCATTTATTTG
Found at i:20444640 original size:17 final size:16
Alignment explanation
Indices: 20444606--20444645 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20444596 TTAGATTAGG
*
20444606 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
20444622 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
20444639 TTTATTT
1 TTTATTT
20444646 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:20444652 original size:17 final size:17
Alignment explanation
Indices: 20444632--20444679 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
20444622 TTTATCTTAA
20444632 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
20444648 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
20444666 TTTCTATTTTTATT
1 TTT-TATTTTTATT
20444680 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:20444679 original size:14 final size:14
Alignment explanation
Indices: 20444632--20444689 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20444622 TTTATCTTAA
20444632 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
20444644 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
20444658 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
20444673 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
20444687 TTT
1 TTT
20444690 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:20444694 original size:17 final size:17
Alignment explanation
Indices: 20444655--20444694 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
20444645 TTTGTTTTAC
*
20444655 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
20444672 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
20444686 TTTTCTTTA
1 TTTTCTTTA
20444695 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:20444777 original size:60 final size:59
Alignment explanation
Indices: 20444697--20444875 Score: 279
Period size: 59 Copynumber: 3.0 Consensus size: 59
20444687 TTTCTTTAAA
20444697 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCT
** *
20444758 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
20444818 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
20444876 CTACACAAGA
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
59 49 0.45
60 49 0.45
61 12 0.11
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (59 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20444862 original size:59 final size:60
Alignment explanation
Indices: 20444697--20444875 Score: 288
Period size: 60 Copynumber: 3.0 Consensus size: 60
20444687 TTTCTTTAAA
* *
20444697 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
20444758 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
20444818 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
20444876 CTACACAAGA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
59 49 0.45
60 53 0.49
61 6 0.06
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20448835 original size:22 final size:22
Alignment explanation
Indices: 20448749--20448835 Score: 97
Period size: 22 Copynumber: 4.0 Consensus size: 22
20448739 AATGGATGAA
* *
20448749 AAATGAGAAAA-GAGAAAAAAG
1 AAATGAAAAAAGGAAAAAAAAG
*
20448770 ATGATGAAAAAAGGAAAAAAAAG
1 A-AATGAAAAAAGGAAAAAAAAG
*
20448793 AAA-GAAAAAAGGAAAAGAAAG
1 AAATGAAAAAAGGAAAAAAAAG
* *
20448814 AAATGAGAAAATGAAAAAAAAG
1 AAATGAAAAAAGGAAAAAAAAG
20448836 GAGATTCAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
21 21 0.38
22 24 0.44
23 10 0.18
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (22 bp):
AAATGAAAAAAGGAAAAAAAAG
Found at i:20450130 original size:42 final size:42
Alignment explanation
Indices: 20450083--20450422 Score: 535
Period size: 42 Copynumber: 8.1 Consensus size: 42
20450073 ATGATTGTAA
20450083 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
*
20450125 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
20450166 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
20450208 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
20450250 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
20450291 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
20450333 AGGAGCAATTTA-TTTTCAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* * * *
20450374 AGGAGCAATTTATGTTTCTC-AAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTC-CAAAAGTCGTGGTGCCTCTGTTTAG
20450417 AGGAGC
1 AGGAGC
20450423 TTTGGTAAAA
Statistics
Matches: 281, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
41 118 0.42
42 133 0.47
43 29 0.10
44 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:20450243 original size:125 final size:125
Alignment explanation
Indices: 20450083--20450422 Score: 583
Period size: 125 Copynumber: 2.7 Consensus size: 125
20450073 ATGATTGTAA
* *
20450083 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
*
20450148 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
*
20450208 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
1 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
*
20450273 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
20450333 AGGAGCAATTTA-TTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAA
1 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAA
* * *
20450397 GTCATTGAGCCTCTGTTTAGAGGAGC
64 GTCGTGGTGCCTCTGTTTAGAGGAGC
20450423 TTTGGTAAAA
Statistics
Matches: 204, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
124 41 0.20
125 136 0.67
126 27 0.13
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (125 bp):
AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
Found at i:20450272 original size:83 final size:82
Alignment explanation
Indices: 20450083--20450422 Score: 527
Period size: 83 Copynumber: 4.1 Consensus size: 82
20450073 ATGATTGTAA
* *
20450083 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTT-CAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAGT
20450148 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
20450166 AGGAGCAATTTACTTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG
1 AGGAGCAATTTAC-TTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAAG
*
20450231 TCGTAGTGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
* * *
20450250 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGT
1 AGGAGCAATTTACTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAAGT
20450315 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
20450333 AGGAGCAATTTATTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAG
1 AGGAGCAATTTACTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-AAAAG
* * *
20450398 TCATTGAGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
20450417 AGGAGC
1 AGGAGC
20450423 TTTGGTAAAA
Statistics
Matches: 238, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
82 1 0.00
83 168 0.71
84 69 0.29
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:20450435 original size:1 final size:1
Alignment explanation
Indices: 20450429--20450473 Score: 63
Period size: 1 Copynumber: 45.0 Consensus size: 1
20450419 GAGCTTTGGT
* * *
20450429 AAAAAAAAAAAAAAAAAACAAAAAAAAAAAACACAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
20450474 TGACAATGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:20450479 original size:15 final size:15
Alignment explanation
Indices: 20450429--20450473 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
20450419 GAGCTTTGGT
20450429 AAAA-AAAAAAAAAA
1 AAAACAAAAAAAAAA
20450443 AAAACAAAAAAAAAA
1 AAAACAAAAAAAAAA
*
20450458 AACACAAAAAAAAAA
1 AAAACAAAAAAAAAA
20450473 A
1 A
20450474 TGACAATGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 4 0.14
15 25 0.86
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAACAAAAAAAAAA
Found at i:20450704 original size:16 final size:16
Alignment explanation
Indices: 20450676--20450832 Score: 72
Period size: 16 Copynumber: 10.2 Consensus size: 16
20450666 TCTTTTGTAT
*
20450676 TTTATGATT-TTATTA
1 TTTATTATTATTATTA
20450691 TTTATTATTATTA-TA
1 TTTATTATTATTATTA
* *
20450706 TGTA-TATTTTTACTTA
1 TTTATTATTATTA-TTA
20450722 TTTA-T-TTATTTATTTA
1 TTTATTATTA-TTA-TTA
* * *
20450738 TTT-TT-CTGTTAATA
1 TTTATTATTATTATTA
20450752 TTTA-TATGTATT-TTA
1 TTTATTAT-TATTATTA
*
20450767 TTTA-TA-TAGTTCTATA
1 TTTATTATTA-TTAT-TA
*
20450783 TTTATTATATATTATAA
1 TTTATTAT-TATTATTA
20450800 TTTATTTATTATTATTA
1 TTTA-TTATTATTATTA
20450817 -TTATT-TT-TTATTA
1 TTTATTATTATTATTA
20450830 TTT
1 TTT
20450833 TTCTTGTAAT
Statistics
Matches: 111, Mismatches: 15, Indels: 33
0.70 0.09 0.21
Matches are distributed among these distances:
13 8 0.07
14 19 0.17
15 29 0.26
16 32 0.29
17 14 0.13
18 7 0.06
19 2 0.02
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:20450728 original size:4 final size:4
Alignment explanation
Indices: 20450684--20450832 Score: 52
Period size: 4 Copynumber: 37.8 Consensus size: 4
20450674 ATTTTATGAT
* *
20450684 TTTA -TTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * *
20450730 TTTA TTTA TTT- TTCTG TTAATA TTTA TATGTA TTTTA TTTA TATA GTTC
1 TTTA TTTA TTTA TT-TA TT--TA TTTA T-T-TA -TTTA TTTA TTTA TTTA
* *
20450779 TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA -TTA TTT-
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
20450823 TTTA -TTA TTT
1 TTTA TTTA TTT
20450833 TTCTTGTAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 34
0.69 0.10 0.21
Matches are distributed among these distances:
3 33 0.29
4 57 0.51
5 14 0.12
6 7 0.06
7 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:20450784 original size:21 final size:17
Alignment explanation
Indices: 20450750--20450814 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
20450740 TTTCTGTTAA
*
20450750 TATTTATAT-GTAT-TT
1 TATTTATATATTATATT
20450765 TATTTATATAGTTCTATATT
1 TATTTATATA--T-TATATT
20450785 TA-TTATATATTATAATT
1 TATTTATATATTAT-ATT
20450802 TATTTAT-TATTAT
1 TATTTATATATTAT
20450815 TATTATTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
15 9 0.21
16 3 0.07
17 12 0.29
18 4 0.10
19 10 0.24
20 4 0.10
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (17 bp):
TATTTATATATTATATT
Found at i:20450833 original size:10 final size:10
Alignment explanation
Indices: 20450783--20450834 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
20450773 TAGTTCTATA
*
20450783 TTTATTATAT
1 TTTATTATTT
* *
20450793 ATTATAATTT
1 TTTATTATTT
20450803 ATTTATTA-TT
1 -TTTATTATTT
*
20450813 ATTATTATTT
1 TTTATTATTT
20450823 TTTATTATTT
1 TTTATTATTT
20450833 TT
1 TT
20450835 CTTGTAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 6 0.18
10 22 0.67
11 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTATTATTT
Found at i:20451462 original size:20 final size:20
Alignment explanation
Indices: 20451435--20451483 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
20451425 TTGGTGAACT
* *
20451435 TCCGGTGAAAAAACCTAGAT
1 TCCGGTGAAAAAACCCAGAA
* *
20451455 TTCGGTGACAAAACCCAGAA
1 TCCGGTGAAAAAACCCAGAA
20451475 TCCGGTGAA
1 TCCGGTGAA
20451484 TCTTCAATCG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
TCCGGTGAAAAAACCCAGAA
Found at i:20451913 original size:17 final size:16
Alignment explanation
Indices: 20451879--20451918 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20451869 TTAGATTAGG
*
20451879 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
20451895 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
20451912 TTTATTT
1 TTTATTT
20451919 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:20451925 original size:17 final size:17
Alignment explanation
Indices: 20451905--20451952 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
20451895 TTTATCTTAA
20451905 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
20451921 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
20451939 TTTCTATTTTTATT
1 TTT-TATTTTTATT
20451953 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:20451952 original size:14 final size:14
Alignment explanation
Indices: 20451905--20451962 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20451895 TTTATCTTAA
20451905 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
20451917 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
20451931 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
20451946 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
20451960 TTT
1 TTT
20451963 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:20451967 original size:17 final size:17
Alignment explanation
Indices: 20451928--20451967 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
20451918 TTTGTTTTAC
*
20451928 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
20451945 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
20451959 TTTTCTTTA
1 TTTTCTTTA
20451968 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:20452066 original size:58 final size:59
Alignment explanation
Indices: 20451970--20452264 Score: 418
Period size: 58 Copynumber: 5.0 Consensus size: 59
20451960 TTTCTTTAAA
* *
20451970 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
**
20452031 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
20452089 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20452149 TAAAAATAAATTTCCAAAAAAA-TATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
20452207 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
20452265 CTACAAAAAA
Statistics
Matches: 211, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
58 98 0.46
59 62 0.29
60 44 0.21
61 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20452119 original size:118 final size:117
Alignment explanation
Indices: 20451970--20452264 Score: 441
Period size: 118 Copynumber: 2.5 Consensus size: 117
20451960 TTTCTTTAAA
20451970 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* *
20452035 AATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
64 AATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
20452089 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
20452154 ATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
20452207 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
20452265 CTACAAAAAA
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
117 47 0.29
118 89 0.56
119 24 0.15
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20452146 original size:28 final size:28
Alignment explanation
Indices: 20452055--20452146 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
20452045 CAAAAAAGGG
20452055 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
20452083 TTTCCTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
20452114 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
20452143 TTTT
1 TTTT
20452147 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:20453799 original size:26 final size:26
Alignment explanation
Indices: 20453763--20453812 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20453753 CCAGTTCGAT
*
20453763 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
20453789 CTTAGACTGGGAATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
20453813 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:20454509 original size:897 final size:898
Alignment explanation
Indices: 20452763--20456574 Score: 5201
Period size: 896 Copynumber: 4.2 Consensus size: 898
20452753 GTTCTTCGGT
* *
20452763 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGATCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
20452828 GTGCTGCTGCAGCCCTAGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTAAGATT
66 GTGCTGCCGCAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
20452892 GGGAATAAACTCCATATGCCTGACTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCACCCAGA
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
** * * ** * * *
20452957 GGGGCGGGATGCATAAGTCGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCATGCTGCAG
195 GGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCTG
* * * * * * * * *
20453022 CAACCCTCAGTCTGGTCTAATCTTAGACTAGGAATTAACTCTGTATGTCGAAGCCAATCGACAAA
260 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GA
* * * * *
20453087 ATGAGCGGGCGGGTGGACAGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGTAAGCTGTGGA
324 A--A-C-GGCGCG-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
20453152 ACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
383 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20453217 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTT
448 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20453282 TTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTCAAAATCTTTTGGGAAAG
513 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGG
* *
20453346 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
577 AGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * *
20453411 GCTAAAAACTCGAAGTGTACGACATTTTGTGACCATTTGAAAAAACTGTCCCCATTCCAGACACT
642 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20453476 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGA
707 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
20453541 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGA
772 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
20453606 GCACACCCCCTCCGGCCCCCCCGATCG-TCGGAACCCCAATACCGCCGGTCAAGATCTCCGAC
837 GCACACCCCCTCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** ** * * **
20453668 GATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGTACATGCCCGGGCATAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
20453733 GTGCTGCCGTAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTG
66 GTGCTGCCGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
20453798 GGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGAGCGCTCAGCCAACCAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAG
* * * ** *
20453863 GGGCGGGATGCGTAAGCCAAGGATCGGCCGAGTCCCCTTCTACGTGCTATCGATCCTGCTACTGC
196 GGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCTGC
* *
20453928 AACCCTCAGTCCGAT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
261 AACCCTCAGTCCGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
20453992 AC-GCGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
325 ACGGCGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
20454056 GGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
390 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
20454121 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATA
455 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
20454186 TTTCATGATTTTCAAAACTTTTTATGGCTT-GGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTG
520 TTTCACGATTTTCAAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * *
20454250 GCCCCAAACTTGGTACATTTGATCCTTGTATTTTTTTTGGGATGCATAAAAAAATTCAGCTAAAA
584 GCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
20454315 ACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTATCCCCATTTCAGACACTTTAAAGG
649 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
20454380 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTGAGGTTTGA
714 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
20454445 TGAGGAATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACC
779 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* **
20454510 CCCT-CGGCCCCCCCGATCGCTGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGT
844 CCCTCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** * ****
20454564 GAAGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATTTATGAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
*
20454629 GTGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
66 GTGCTGCCGCAACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
20454693 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
* * * * *
20454758 GGGGCGGGATGGGCAAGCCGAGAATCGATCC-GTTCCCCTTCTACGTGCTGCCGATCCTGCTGCC
195 GGGGCGGGATGCGCAAGCCGAGGATCG-GCCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCT
** *
20454822 ATAACCCTCAGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTAT-CCTAAGCCAACCGACGA
259 GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
20454886 AA-TGAGCGGGCGGGCGGCCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATA
324 AACGGCGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
20454950 GGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCTATTTTTATGGCCTGT
389 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
20455015 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCATTTTCTAT
454 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
20455080 TTTTCACGATTTTGGAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAGGGAGTTTTG
519 TTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
20455145 GCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAA
584 GCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
20455210 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
649 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
20455275 CTGCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTGAGGTTTGA
714 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
20455340 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCACACC
779 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
20455405 CCCCCCGGCCCCCCTGATCGCTGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGC
844 CCCTCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
*
20455460 AATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * * * *
20455525 GTACTATCACAACCCTCGGT-CTGATCCAATCTTATACTGAGAATGAACTCCGTATGCTTAGACT
66 GTGCTGCCGCAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
** * * * **
20455589 GTAAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTTCGGGCGCTCAGCTGGCCAGA
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
* * * *
20455654 GGGGCGGGATGCGCAAGCC-AGGCATCGGCTGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCT
195 GGGGCGGGATGCGCAAGCCGAGG-ATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCT
* ** * * * * *
20455718 GTAATGCTCAGTCCGGTCCAATCTTAGACTGGTAATGAACTTCGTCTACCTTAGCCAACCGACGA
259 GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
20455783 AACGAGCGGGCGGGCGGGCGTGTGGGCACTACGTCGGCCATAGAGAGGGGATGCGCAAGCCGTGG
324 AACG-GC--GCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
20455848 ATCGATTGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
382 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
** * *
20455913 GGCTTGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACCCGT
447 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
20455978 TTTCTATTTTTCATGATTTTCAAAATTTTTTACGGTTCGAGATTTTTTCAAATTTTTTTGGAAGA
512 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
20456043 AGTTTTGGCCCCAAACTTAG-ACA--TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
577 AGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
** *
20456105 TTTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
642 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
20456170 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
707 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* **
20456235 GGTTTGATAAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGC
772 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
20456299 GCACACCCCCTGCCTCGACCCTCCCGATCACCGAAACCCTAATGCCACCGGTCAGGTTCTCCGAC
837 GCACACCCCCT--C-CGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * *
20456364 GATGCTCTGACGATGGTGCCCCGACGAAGCAAATTATGGCACCAGCACATGCCCGCGCCCAGCGT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * * *
20456429 GTGCTGTCATAACCCTCGGTCCGGTACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
66 GTGCTGCCGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * * * * *
20456494 AGAATGAACTCTGTATCCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGCTCAGCCGGCTAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAG
* *
20456559 GGGCGAGATGAGCAAG
196 GGGCGGGATGCGCAAG
20456575 TCAGGGATCG
Statistics
Matches: 2583, Mismatches: 297, Indels: 55
0.88 0.10 0.02
Matches are distributed among these distances:
894 2 0.00
895 504 0.20
896 609 0.24
897 492 0.19
898 4 0.00
899 5 0.00
901 67 0.03
902 174 0.07
903 1 0.00
904 223 0.09
905 501 0.19
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAG
GGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCTGC
AACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGGCGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CTCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
Found at i:20454695 original size:26 final size:26
Alignment explanation
Indices: 20454659--20454711 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20454649 CTGGTCTGAT
20454659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20454685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20454711 C
1 C
20454712 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20458133 original size:26 final size:26
Alignment explanation
Indices: 20458097--20458149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20458087 CTGGTCCGAT
*
20458097 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
20458123 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
20458149 C
1 C
20458150 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:20459207 original size:331 final size:331
Alignment explanation
Indices: 20458563--20459212 Score: 979
Period size: 332 Copynumber: 2.0 Consensus size: 331
20458553 AGTTCGGGAT
* *
20458563 TTTTTAAAATTTTTTTGGAAGGATTTTTCACCCCAAACATGGTAGATGTGATCCTTGTATTTTTA
1 TTTTTAAAATTTTTTCGGAAGGATTTTTCACCCCAAACATGGTAGACGTGATCCTTGTATTTTTA
*
20458628 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACGAGATTTGTCACCATTTGAAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTGTCACCATTTGAAAAA
20458693 AGTGTCCCATTTCAGACACTTCAATGGCTACCGGCAACAAACATGTAAAATCTCAAATGCTCCTT
131 AGTGTCCCATTTCAGACACTTCAATGGCTACCGGCAACAAACATGTAAAATCTCAAATGCTCCTT
* *
20458758 AAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTGCCGGC
196 AAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
20458823 ACCCATTGCACATCATGTGCACACAGCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCC
261 AACCATTGCACATCATGTGCACACA-CCCCTCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCC
20458888 GGTCGGG
325 GGTCGGG
** *
20458895 TTTTTAAAATTTTTTCGGAAGGCA-TTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
1 TTTTTAAAATTTTTTCGGAAGG-ATTTTTCACCCCAAACATGGTAGACGTGATCCTTGTATTTTT
* * * *
20458958 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGAGCATTTGAAA
65 ATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA-TTTGTCACCATTTGAAA
* * * *
20459023 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
129 AAAGTGT-CCCATTTCAGACACTTCAATGGCTACCGGCAACAAACATGTAAAATCTCAAATGCTC
* * * * **
20459088 TTTAAGGGGGTGTGAGTTTTCAAGG-TTGATGAGGGATAGGTGGCCAATATAATTGCCAAGTACC
193 CTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACC
*
20459152 AGCAACCATTGCACATCATGTGCGCAC-CCCCT-GGCCCCCACCGATCG-CTGGAACCCCAATG
258 AGCAACCATTGCACATCATGTGCACACACCCCTCGG-CCCC-CCGATCGTC-GGAACCCCAATG
20459213 CCGTCGGTCA
Statistics
Matches: 288, Mismatches: 24, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
329 2 0.01
330 10 0.03
331 94 0.33
332 105 0.36
333 77 0.27
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (331 bp):
TTTTTAAAATTTTTTCGGAAGGATTTTTCACCCCAAACATGGTAGACGTGATCCTTGTATTTTTA
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTGTCACCATTTGAAAAA
AGTGTCCCATTTCAGACACTTCAATGGCTACCGGCAACAAACATGTAAAATCTCAAATGCTCCTT
AAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
AACCATTGCACATCATGTGCACACACCCCTCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCCG
GTCGGG
Found at i:20459357 original size:25 final size:26
Alignment explanation
Indices: 20459329--20459380 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
20459319 TCGATCCAAT
*
20459329 CTTAGACTAGTAATG-ACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20459354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20459380 C
1 C
20459381 CGAAGTGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20460261 original size:26 final size:26
Alignment explanation
Indices: 20460225--20460275 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20460215 GGTCTGATCG
20460225 TAGACTGGGAATGAAATCCATATGCT
1 TAGACTGGGAATGAAATCCATATGCT
*
20460251 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAAATCCATATGC
20460276 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAAATCCATATGCT
Found at i:20461122 original size:26 final size:26
Alignment explanation
Indices: 20461093--20461145 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20461083 CCGATCCGAT
20461093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20461119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20461145 C
1 C
20461146 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20461298 original size:868 final size:865
Alignment explanation
Indices: 20458895--20461320 Score: 3341
Period size: 868 Copynumber: 2.8 Consensus size: 865
20458885 CCCGGTCGGG
*
20458895 TTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTTAAAATTTTTTCGGAAGGCATTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
* *
20458960 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGAGCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCA-AAGATTTTGTGAGCATTTGAAAAA
20459025 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
130 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * **
20459090 TAAGGGGGTGTGAGTTTTCAAGG-TTGATGAGGGATAGGTGGCCAATATAATTGCCAAGTACCAG
195 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAG
* * * ** *
20459154 CAACCATTGCACATCATGTGCGCACCCCCTGGCCCCCACCGATCGCTGGAACCCCAATGCCGTCG
260 CACCCATCGCACATCATGTGCGCA----C--ACCCCC-CCGATCGCCAGAACCCCAATGCCGCCG
* * *
20459219 GTCATGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCACAT
318 GTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * * * * *
20459284 GTCTGAGCCTAGCATGTGCTGCTGCAACCCTCTGTTCGATCCAATCTTAGACTAGTAATG-ACTC
382 GCCCGAGCCCAGCATGTGCTGCCGCAACCC-CCGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * * *
20459348 CATATGCTTAGACTGGGAATGAACTCCGTATGCCGAAGTGAA-CCTACGAAATGAGCGTGCAGGT
446 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCT-CGAAACGAGCGTGCGGGT
*
20459412 GCTCAGTCGGCCAGAGGGGC-AGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTATGTGC
510 GCTCAGTCGGCCAGAGGGGCGA-GATGCGCAAG-CGGGGATCGGCT-GGGTCCCCCTCTA-----
* *
20459475 TGCTGATTCTGCTGCCGTAACCCTCAG-TCTGGTCTATGATCTTAGACTAGGAATGAACTCTGTA
567 --C-G----TGCTGCCGTAACCCTCCGTTC-GGTC--TGATCTTAGACTGGGAATGAACTCTGTA
* * * *
20459539 TGCCTAATCCAACCAACGAAACGAGCAGGCGGACGGGTGGGCGGGCACTGCGCCTGCCAAAGAGA
622 TGCCTAAGCCAACCGACGAAACGAGCGGGCGAACGGGTGGGCGGGCA-----CCT-------A-A
* *
20459604 CAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
674 CAGGATGTGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
20459669 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
739 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
20459734 TCATGGCAAGACGACTCAGTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
804 TCATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGAT
* * *
20459796 TTTTTAAAATTTTTTCGGAAGGTATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGGATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGCATTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
*
20459861 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAAAGATTTTGTGAGCATTTGAAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCAAAGATTTTGTGAGCATTTGAAAAA
* * *
20459926 AGTGTCCTCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTG
130 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
20459991 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAG
195 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAG
* *
20460056 CACCCATCGCACATCATGTGCGCACA-CCCCCCGATTGCCAGAACCCAAATGCCGCCGGTCAGGT
260 CACCCATCGCACATCATGTGCGCACACCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGT
* *
20460120 TCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
325 TCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
20460185 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCGTAGACTGGGAATGAAATCCATATGC
389 CCCAGCATGTGCTGCCGCAACCC-CCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
* *
20460250 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
453 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGTGCTCAGTC
* * * *
20460315 GGCCAGAGGCGCGGGATGCGCAAGCTGGGGATCGGCGGGGTCCCCCTCTACGTGCTGCCG-ATCC
518 GGCCAGAGGGGCGAGATGCGCAAGC-GGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGTAACC
* * *** *
20460379 TGTTGCCTGTCCCCCCTTATCTTAGACTGGGAATGAACTCTGTAT-CCTAAGCCAACCGACGAAA
582 --CT-CC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
* *
20460443 CGAGCGGGCGAACGGGTGGGCGGGCA-CT-ACGGGATGTGCAAGCCATGGATCGGTAAGGTGGTA
643 CGAGCGGGCGAACGGGTGGGCGGGCACCTAACAGGATGTGCAAGCCATGGATCGATAAGGTGGTA
* *
20460506 GGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
708 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
20460571 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCAC
773 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAG-TTTCTATTTTTCAC
*
20460635 GATTTTTGAAACTTTTTGCCGTTCGGGAT
837 GATTTTTGAAACTTTTTACCGTTCGGGAT
* * * *
20460664 TTTTTAAAATTTTTTCGGAAAG-AGTTTTAGCCCCAAAGTTGGCAGACCTGATCCCTT-TATTTT
1 TTTTTAAAATTTTTTCGGAAGGCA-TTTT-GCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTT
* * *
20460727 TGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAA
63 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCA-AAGATTTTGTGAGCATTTGAA
* *
20460792 AAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
127 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
20460857 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAAGGCCAAGTAC
192 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTAC
* * *
20460922 CAGCACCCATCGCACATGATGTGCGCACACCCCCCCGATCACCAAAACCCCAATGCCGCCGGTCA
257 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCA
*
20460987 GGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC
322 GGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
*
20461052 GAGCCCAGCATGTGCTGCCGCAACCCCCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
386 GAGCCCAGCATGTGCTGCCGCAACCCCCG-TCCGATCCGATCTTAGACTGGGAATGAACTCCATA
* *
20461117 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCTCA
450 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGTGCTCA
* *
20461182 GTCGTCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTACGTGCTACCGTA
515 GTCGGCCAGAGGGGCGAGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGTA
* * *
20461247 ACCCTCCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGTAAC
579 ACCCTCCGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
20461312 GAGCGGGCG
644 GAGCGGGCG
20461321 GGCGGGATAG
Statistics
Matches: 1375, Mismatches: 127, Indels: 79
0.87 0.08 0.05
Matches are distributed among these distances:
867 33 0.02
868 299 0.22
869 176 0.13
870 264 0.19
871 5 0.00
877 2 0.00
882 3 0.00
883 49 0.04
884 28 0.02
885 1 0.00
886 2 0.00
887 2 0.00
888 1 0.00
893 1 0.00
894 129 0.09
895 111 0.08
896 3 0.00
898 1 0.00
901 134 0.10
902 131 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (865 bp):
TTTTTAAAATTTTTTCGGAAGGCATTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCAAAGATTTTGTGAGCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTT
CTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCCCGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGTGCTCAGTCGGC
CAGAGGGGCGAGATGCGCAAGCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGTAACCCTCC
GTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGAACGGGTGGGCGGGCACCTAACAGGATGTGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTTTGA
AACTTTTTACCGTTCGGGAT
Found at i:20462456 original size:25 final size:26
Alignment explanation
Indices: 20462421--20462470 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
20462411 GATCCGATCC
20462421 TAGACTAGGAATGAACTCC-TATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
20462446 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
20462471 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:20464518 original size:900 final size:896
Alignment explanation
Indices: 20461324--20466748 Score: 6789
Period size: 900 Copynumber: 6.1 Consensus size: 896
20461314 GCGGGCGGGC
* * ** * *
20461324 GGGATAGAGGGCTAATATAAGGGATAAATTACCAGCACCCATCACACATCATGTGCGCACACCCC
1 GGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
20461389 TCCGGCCCCCCCGATCACCGGAACCTCAATGCCGCCGATCAGGTTC-CCTGACGATGCTCCGACG
65 -CC--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GGCGATGCTCCGGCG
* * * * *
20461453 ATGGTGCCTCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAA
126 ATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAA
* * *
20461518 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAATTCC
190 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCC
* * **
20461583 ATAGGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
254 ATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * **
20461648 CAAGCTGGGGATCAATCGGGTCCCCCTCTGTGTGCTGTCGAT-C--CTACTG-----C-CGGTCC
319 CAAGCCGGGGATCGA-CCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCC
* * * *
20461704 GGTCCA-ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGA
383 GG-CCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGG
* * * *
20461768 GCGGGCGGC--CACTACGTCGGCCAGAGAGACGAGATGCGCAAGCAGTGGATCGGTAGGGTGGTA
447 GCGGGCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* ** *
20461831 GGTGGGTTTGGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAC
512 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
20461896 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
577 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * *
20461961 ATTTTTGAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
642 ATTTTT-AAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
20462026 ACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
706 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-A
* *
20462091 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTA
770 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
20462156 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTATGA
835 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
20462218 GGGATAGGGGGCCACTACAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
*
20462283 CCCGGTCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA--------CGA
65 CCC---CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* ** * * **
20462337 TCGTGCCCTTGCGATGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTTGCAAC
127 TGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAAC
* * * *
20462402 CCTCGGTCCGATCCGATCCTAGACTAGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCAT
191 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCAT
* * * * * *
20462467 ATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTTAGCCGGCCAAAAGGGCGGGATGCGCA
256 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * * *
20462532 AGCCGAAGATCGGCCGCATCCTCCTCTGTGTGCTGTCGATCCTGCTACCG---------ATCCGG
321 AGCCGGGGATCGACCG-GTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGG
* * *
20462588 TCC-GGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-A--ACAA--AACGAGCGGG
385 -CCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA-AACGAACGGGCGGG
** *
20462647 TTGGC-G-GGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
448 CGGGCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
20462710 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
513 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
20462775 CAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
578 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * * *
20462840 TTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATATTTTCGGAACGACTTTTGGCCCAAAA
643 TTTTTAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
20462904 CTTGGTAGATGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAA
707 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AA
20462969 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
771 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
20463034 CAGCAAACCTGTAAAATCTCAAATGCACTTTAA-GGGGTGTGAGTTGTCAAGGTTTGATGA
836 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20463094 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * *
20463159 TCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGACAATGCTCCGGCGA
65 -CC--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* * ** * * *
20463224 TGGTGTCCC-GAAGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAATAGGTCCTGCTGCAA
127 TGGTGCCCCAG-CGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAA
* * * *
20463288 CCCTCGATCCGGTCCAATCTTAGACTGGGATTGAACTACGTATGCTTAGACTGGGAATGAACTCT
190 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * *
20463353 GTATCCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGCGACGGGATACG
254 ATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * **
20463418 CAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGTTGTCGGTCCTGCTGCTGCAACCCTCGGTCC
319 CAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCC
* * * * * *
20463483 GGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAC-AAGCAGGCGG
383 GGCCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAA-CGGGCGG
* ** * * * *
20463547 GCGGACGGGCGGGTTCTACGCCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGGGTGA
447 GCGGGC-GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
20463612 TAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
510 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
20463677 ATATAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGGCAAGACGACTCGTTTTCTATTTTTCA
575 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
20463742 TGATTTTTGAAACTTTTTGCGGTTCAAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
640 TGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
20463807 AATTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
705 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
20463872 AGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
770 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
20463937 GAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTAATGA
835 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20463999 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACA-CCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * *
20464063 CCCCCCCCGATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
66 CCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
* * * * *
20464128 GCCCCAACAAAGAAAAGTGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTG
131 GCCCCAGCGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
20464193 GGTCTGGTCCGATTTTAGACTAGGAAAGAACTACGTATGCTTAGACTGGGAATGAAGTCTATATG
195 GGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCATATG
* * * * *
20464258 CCTAAGTCAACCCACGAAATGAGTGTGTGGGCACTCAGCCGCCCAGAGGGGCGGGATGCACAAGC
259 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* *
20464323 CTGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCTTGCTACCGCAACCCTCAATCCGGCCA
324 CGGGGATCGACC-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGCCA
* *
20464388 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTAACCGATGAAACGAACGGGCGGGCGGGC
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGC
20464453 GGACGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
453 GG-CG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
20464518 GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTATATTCATACAA
516 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
20464583 TGGTCTCTTAAGCCTTAACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
581 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * * * *
20464648 TCAAAACTTTTTGCGGTTTGGGATATTTTAAAATTTTTTTGGAAGAAGTTTTTGCCCCAAACTTG
646 TTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
20464713 GTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTA
711 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
20464778 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
776 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
20464843 AACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
841 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
20464899 GGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACACCA
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CC-
* * * * * * * *
20464964 CCCGGCCCCCCCGATCGCCGGAACCCAAATTCTGCCGGACGGGTTCTTCGGCGATGCTTCAGCGA
64 CCC--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* *
20465029 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAAC
127 TGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAAC
* * * *
20465094 CCT---T----T--G-TC-CAG--T-----T----T-G-AT-CTTAGATTGGGAATGAACTTCGT
191 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCAT
** * * **
20465134 ATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGAAACGCA
256 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * *
20465199 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGAT-C--CTACCGCAAACCTCAATCCGG
321 AGCCGGGGATC-GACCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGG
** * * * * *
20465261 TTAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCGAAACGACGAAACGAGCGGGCGGGCG
385 CCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCG
* * * *
20465326 GGC-G-GGCATTAC-CCTGGCCAAAAAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
450 GGCGGCGGCACTACGCC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * **
20465388 TGGGTTTAGGCACATCTTCCTATTTCTGCATGCCAATGCCATTTTTACAGCTTGTAAATTCATAC
514 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20465453 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGAT
579 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * **
20465518 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATATTTTCCAAAGGAGTTTTGGCCCCAAACT
644 TTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
20465583 TAGTAGACGTGATCCTTGTATTTTTCTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
709 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
20465648 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAG
774 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * *
20465713 CAAACCTGTGAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTATGGTGA
839 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20465771 GGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCGC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-C
*
20465836 CCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA--------CGA
64 CCCC--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* * * ** * *
20465890 TGCTGCCCCAGTGAAGAAAAATGCGGAACCAGCATGTGCCCGAGCCCAGCATGTGTTGCCACAAC
127 TGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
20465955 TCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
191 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCA
*
20466020 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGC
255 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * ** * * * *
20466085 AAGCCGGGGATCGATCGAGACCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTACA
320 AAGCCGGGGATCGACCG-GTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCG
* * * *
20466150 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG-TCGAAACGAGCGGGCGGG
384 GCCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAACGAACGGGCGGG
* ** *
20466214 C--G-GGCGG----ACG--GG---TA-CTAC--G-T-CGCAAGTCGTGGATCGATAGGGTGGTAG
448 CGGGCGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** *
20466262 GTGGGTTTAGGCATGTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
513 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
20466327 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-GCACAAGATGACTCGTTTTCTATTTTTCACG
578 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG-GCAAGACGACTCGTTTTCTATTTTTCATG
* * ** * *
20466391 ATTTTAAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGAACTCAAC
642 ATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
** *
20466456 CTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAG
707 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
20466521 TGTACAAGATTTTGTGTCCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGC
772 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
** *
20466586 AGCAAACCTGTAAAATCAAAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGA
837 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20466646 GGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
20466711 CGGCCCCCCTGATCACCGTAACCCCAATGTCACCGGTC
66 C--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
20466749 TGAGGGGCGG
Statistics
Matches: 3964, Mismatches: 459, Indels: 237
0.85 0.10 0.05
Matches are distributed among these distances:
861 60 0.02
862 2 0.00
864 1 0.00
868 1 0.00
869 3 0.00
870 2 0.00
871 5 0.00
872 497 0.13
873 35 0.01
874 4 0.00
875 428 0.11
876 206 0.05
877 211 0.05
878 188 0.05
879 113 0.03
880 7 0.00
881 4 0.00
882 160 0.04
883 90 0.02
885 8 0.00
886 5 0.00
887 193 0.05
888 120 0.03
889 3 0.00
890 72 0.02
891 4 0.00
892 1 0.00
893 34 0.01
894 62 0.02
895 1 0.00
896 2 0.00
897 42 0.01
898 2 0.00
899 5 0.00
900 797 0.20
901 10 0.00
902 5 0.00
903 7 0.00
904 98 0.02
905 475 0.12
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
GCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCATATGCC
TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGACCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGCCAGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGC
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
Found at i:20466008 original size:26 final size:26
Alignment explanation
Indices: 20465972--20466024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20465962 CCGATCCGAT
* *
20465972 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20465998 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20466024 C
1 C
20466025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20467389 original size:700 final size:700
Alignment explanation
Indices: 20466241--20468843 Score: 3057
Period size: 700 Copynumber: 3.7 Consensus size: 700
20466231 CGTCGCAAGT
* *
20466241 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTACATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
* *
20466306 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGCACAAGATGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAG-GCAAGACGA
* *
20466371 CTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
130 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCG
* ** * * ** *
20466436 GAAGGACTTTTGAACTCAACCTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
195 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
20466501 GTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCACTTGAAAAAAGTGTCCCCATTTCAG
260 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAG
* ** *
20466566 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCAAAAATGCTCTTTAAGGAGGTGTGAGTT
325 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20466631 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
20466696 TGTGCGCACACCCCCCGGCCCCCCTGATCACCGTAACCCCAATGTCACCGGTCTGAGGGGCGGGA
455 TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCACCGGTCTGAGGGGCGAGA
* *
20466761 TGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCG
520 TGTGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCG
*
20466826 ATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GTG
585 ATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTG
* *
20466890 GGGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATTCGCAAAC
650 GGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAAC
*
20466941 CGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
*
20467006 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-GGCAAGACGA
* * *
20467071 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCG
130 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
20467136 GAAGGAGTATTGGCCCCAAAGTTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGAACAAAAAA
195 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
20467201 ATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
260 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAG
* *
20467266 ACACTTTAATGGCTACTGGTAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
325 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
20467331 CTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
390 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
20467396 TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
455 TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTC-AC---C-GG-TCT--GA-
** ** * ** ** * ** ** * * *
20467461 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACGTGCCCGAGC-ACAGCA
511 G--G-GGCGA-GAT-GTG-CAAGCCGGGGATCAGT-CGGGTCCCCCTC-TG--CGTGCTACCG-A
* * * ** * *
20467525 T-GTGCTGCCGCAACCATCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
565 TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
20467589 TAACCAACGAAACAAGCGT-----GC-GG-GAGC--TCA--A--CCGGCCAGAGGGGCGGGATGC
630 CAACCGACGAAACGAGCGTGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
20467641 ACAAAC
695 GCAAAC
* * ****** * * * * ** *
20467647 CAG-GGATCGGTCGGGTCCCCCTCTGCGTCCT-GCCA-ATC--C-TGTTGT-TGCAACCCTCGAT
1 C-GTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCATATCTTCATATT-TCTGC-ATGC-C-AA
* * * * * * * ** * * ** * * *
20467705 TCGGTCAGATCTGA-GACTAG-GAATGAACTCCGTAT-G--CC-TAAGCCAAC-CGACGAA-ATG
59 T--GCCA-TTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCCTTAAGCCTTCACG-TGAAGTTT
* * * * ** * * * * * *
20467762 CGGGC-GGGCGGGCAGGTAAATTCTATTTTTCATGATTTTCAAAACTTTTTGCGTTTTGAGATTT
118 CAGGCAAGAC-GACTCGT--TTTCTATTTTTCACGATTTTTAAAACTTTTTGAGGTTCGAGATTT
* *
20467826 TTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
180 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * **
20467891 GGCATGCATAAAAAAATTCAGCTAAAAAGTCGAAGTGAACAAGA-TTTGTTTCCACTTGAAAAAA
245 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAA
*
20467955 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTT
310 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
20468020 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
375 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * **
20468085 ACCCATCGCACATCATGTGCGCACACCCCCGGGCCCCCCCGGTCGCCGTAACCCCAATGTCGTCG
440 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCACCG
* * * * * ** * *
20468150 GCCAGAGGGGCGAGATGCT-CAAGCCGGGGATCCGTCGAGTCTCCCTCTATGTGCTGCCAATCCT
505 GTCTGAGGGGCGAGATG-TGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
* * *
20468214 GCTACCGCAACCCTCGGTCCGATCCCATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
569 GCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
20468279 CGACGAAACGAGCG-GGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
634 CGACGAAACGAGCGTGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
20468343 AC
699 AC
*
20468345 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
* *
20468410 TTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCACGGCAAGACGA
66 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-GGCAAGACGA
* * *
20468475 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTTGGGATTTTTTAAAATTTTTTC
130 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTC
* *
20468539 GGAAGGTGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
194 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20468604 AAATCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TATGAAAAAAGTGTCCCCATTTC
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACT-TGAAAAAAGTGTCCCCATTTC
* *
20468668 AGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
323 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20468733 TTCTTGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACAT
388 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * **
20468798 CATCTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATG
453 CATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATG
20468844 CCGTCGGTCA
Statistics
Matches: 1565, Mismatches: 264, Indels: 148
0.79 0.13 0.07
Matches are distributed among these distances:
685 5 0.00
686 70 0.04
687 1 0.00
688 5 0.00
689 7 0.00
690 3 0.00
691 6 0.00
692 6 0.00
693 1 0.00
694 2 0.00
695 6 0.00
696 13 0.01
697 12 0.01
698 44 0.03
699 150 0.10
700 662 0.42
701 15 0.01
702 4 0.00
703 13 0.01
704 206 0.13
705 147 0.09
706 43 0.03
707 12 0.01
708 14 0.01
709 6 0.00
710 2 0.00
711 1 0.00
712 5 0.00
713 5 0.00
714 5 0.00
715 7 0.00
716 7 0.00
717 2 0.00
718 70 0.04
719 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (700 bp):
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCACCGGTCTGAGGGGCGAGAT
GTGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGA
TCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGG
GGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAAC
Found at i:20468978 original size:26 final size:26
Alignment explanation
Indices: 20468949--20469001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20468939 CTGGTCTGAT
*
20468949 CTTAGACTGGGTATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20468975 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20469001 C
1 C
20469002 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20471086 original size:866 final size:865
Alignment explanation
Indices: 20468220--20472798 Score: 5062
Period size: 866 Copynumber: 5.2 Consensus size: 865
20468210 TCCTGCTACC
* * * * *
20468220 GCAACCCTCGGTCCGATCCCATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGA
1 GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
* * * *
20468285 AACGAGCGGGGGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCGTGG
66 AACGAGCGGGCGAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
20468350 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * * *
20468415 GGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCACGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGACTCGT
* * * *
20468480 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
260 TTTCTATTTTTCACGA-TTTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
20468545 TGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCG
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20468610 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGAAACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
20468675 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
20468740 GGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATCTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
20468805 GCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAAT---GCC-GTC-GG---T-C-A-GGTTC
584 GCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGC
* *
20468859 TCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
649 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
20468924 GCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGTATGAACTCTGTATGCTTAGACTGGGAAT
714 GCCGTAA--C-C---C---TC-GATC-----C--GG--T---C-C-G-AT-CTTAGACTGGGAAT
* * * *
20468989 GAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCCGGCCAGAGGGGC
753 GAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGC
* *
20469053 -AGGATGAGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTACTGTCGATCCTGCT
817 GA-GATGCGCAAGCCGGGGATCGGCCGGGT-CCCCTCTGC-TAC-GT-G---CTGCT
* * ** * * * *
20469109 GCCACAACCATTAGTTTGGTTCGATCTGAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGA
1 G---CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * * *
20469174 TGAAACTAGC--G-G-GC--G-GGCGGGCACTACGCCGGCC-GTAGAGACTGGATGTGAAAGTCG
63 CGAAACGAGCGGGCGAGCGGGCGGCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCG
* *
20469231 TGGATCGATAGGGTGGCAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
20469296 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGG-GAAGATGAC
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCG-AGATGAC
* *
20469360 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-ATGATTTTTTAAAATTTTTT-G
256 TCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
* * * *
20469423 GAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAA
319 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
20469488 ATTCAGCCAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTTAAAAAAAGTGTCCCCATTTCA
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCA
* * * *
20469553 GACACTTTAATGGCTACTAGAACCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
448 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20469618 TCTCGAGGTTTGATGAGGGATAAGGGACCAATATTAA-GGCCAAGTACC-GACACCCATCACACA
513 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATA-TAAGGGCCAAGTACCAG-CACCCATCGCACA
* * * * * * *
20469681 TCATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCAAATGTCGCCGGTCAGGCTCTCG
576 TCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
** * * *** * * **
20469746 GGTGATGCTCCGGCAATGGTG---C--CG--TAACCCT-CGG-TCCAG----T--CCGATCTTAG
641 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20469796 -A----CTG--GGAA---T-GAACTCC-ATAC-A-CTTAGACTGGGACTGAACTCCGTATGCCTA
706 CATGTGCTGCCGTAACCCTCG-A-TCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTA
* * * * * *
20469847 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGCCGGGATGCGTAAGCCGAG
769 AGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGG
* * * *
20469912 GATCGGTCGGGTCCCCTTCTATGTGCTGCCGATCCTACTGT
834 GATCGGCCGGGTCCCC-TC----TGCT-ACG-TGCTGC--T
* ** *
20469953 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACTGACG
1 -GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG
* * *
20470018 AAACGAGC-GG-GA-CGGGCGGGGGGCATTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGG
65 AAACGAGCGGGCGAGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
20470080 ATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCAATTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
20470145 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT-TCTCG
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGA-TGACTCG
* * * *
20470209 TTTTCTATTTTTCAGGATTTTCAAAATTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
259 TTTTCTATTTTTCACGATTTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
20470274 AGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
20470339 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * ** * * *
20470404 TTAATGGCTGCTGCCAGCAAACCTGTAAAATCTGAAATGCTCAGTAAGTGCGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20470469 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
20470534 GCACACCCCCCCTCGGCCCCCCCGATC-GCTGGAACCCCAATACCGCCAGTCAGGTTCTCCGACG
584 GCACA--CCCCC-CGGCCCCCCCGATCATC-GGAACCCCAATGCCGCCAGTCAGGTTCTCCGACG
* ** * * *
20470598 ATGCTCCGGCGATGGTGTCTTGAGGAAGAAAAATGCGGCACCAGCGCATGCCCGAGCCCAGCATA
645 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
20470663 TGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
710 TGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
*
20470728 CCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGG
775 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGG
*
20470793 CCTGGTCCCC-CT-CTACGTGCTGCT
840 CCGGGTCCCCTCTGCTACGTGCTGCT
* **
20470817 GCAACCCTCAGT-TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCATTTGACGA
1 GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
* *
20470881 AACGAGCGGGCGAGTGGGCGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
66 AACGAGCGGGCGAGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
20470946 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
** * * *
20471011 GGCTCATAAATTC-TCACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCGAGATGACTCA
195 GGCTTGTAAATTCAT-ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGACTCG
* *
20471075 TTTTCTATTTTTCACGATTTTCAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGG
259 TTTTCTATTTTTCACGATTTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
20471140 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTAAAAAAAAAGTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
20471205 GCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20471270 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
20471335 GGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATCGCACCTCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
20471400 GCACACCCCCCGG-CCCCCTGATCATCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGATGATGC
584 GCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCG-C---CA-G---T-C-A-GGTTC
* * *
20471464 TCCGACGATGCTCCGACGATGGTGTCCCGACG-AGAAAAATGCGGCACCAGCACATGCTCGAGCC
638 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
20471528 CAGCATGTGCTACCGTAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
703 CAGCATGTGCTGCCGTAA--C-C---C---T-CGATC-----C---G---G---TCCG-AT-CTT
* * * *
20471593 AGACTGGGAATGAACTTCGTATGTCTAAGTCAACCCATGAAACGATCGTACGGGTGCTCAGTCGG
742 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * * *
20471658 CCAGAGGGGCGGGATGCGTAAGCTGGAGATCGGTCGGGTCCCCTTTGCGTGCTACCGATCCTACT
807 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCC--T-C-TGCTA-CG----TGCT
20471723 GCT
863 GCT
* *
20471726 GTAACCCTCAGTCCGGT-CAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-TCGAC
1 GCAACCCTCAGTCCGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GAC
* * *
20471789 GAAATGAGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
64 G-AA--A-CGAGCGGGCGAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
20471854 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTCCATATTTCTACATGCCAATGCCAT
124 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20471919 TTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATG
189 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATG
* * * * *
20471984 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTC
254 ACTCGTTTTCTATTTTTCACGA-TTTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
20472049 GGAAGTAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
318 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20472114 AATTTAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA
383 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
20472178 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
448 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
***
20472243 TCTCGAGGTTTGATGAGGGATAGGGTATCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
513 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
20472308 ATGTGCGCACATCCCACCCTGGCCCCCTCGATCATCGGAACCCCAATGGCACCAGTCAGGTTCTC
578 ATGTGCGCACA-CCC-CCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTC
* * * *
20472373 CGACGATGCACCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
640 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
20472438 GCATGTGCTACCGTAGCCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
705 GCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACT-GG---G-A------ATG---A-
* * *
20472503 ACTGGGAATTAACTCTGTATGCCTAAGTCAACCCGTGAAACGAGCGTACGGGCGCTCCGTCGGCC
755 AC-------T---TC-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCC
* * * * * * *
20472568 AGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCGATCCTACT
809 AGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGT--CCC-CT-C-TGCT-ACG-TGCTGCT
* ** * *
20472632 GTCACAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGA
1 G---CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * *
20472697 CGAAATGAGC--G-G-GC--G-GGCGGGCACTACGTCAGCCAGAGAGGCAGGATGCGCAAGCCGT
63 CGAAACGAGCGGGCGAGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
20472755 GGATCGATAGGGTGTTAGGTGGGTTTAGGCACATTTTCATATTT
128 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
20472799 ATGGCAAGAC
Statistics
Matches: 3165, Mismatches: 340, Indels: 362
0.82 0.09 0.09
Matches are distributed among these distances:
841 4 0.00
842 155 0.05
843 4 0.00
844 5 0.00
845 175 0.06
846 283 0.09
847 9 0.00
848 55 0.02
851 1 0.00
853 1 0.00
855 3 0.00
856 4 0.00
857 4 0.00
859 1 0.00
860 1 0.00
861 4 0.00
862 75 0.02
863 25 0.01
864 9 0.00
865 7 0.00
866 470 0.15
867 3 0.00
868 5 0.00
869 1 0.00
870 4 0.00
871 1 0.00
872 48 0.02
873 39 0.01
874 3 0.00
875 104 0.03
878 1 0.00
879 1 0.00
880 6 0.00
881 1 0.00
882 14 0.00
883 110 0.03
884 380 0.12
885 3 0.00
886 6 0.00
887 9 0.00
888 8 0.00
889 4 0.00
890 4 0.00
892 59 0.02
893 5 0.00
895 15 0.00
896 5 0.00
897 84 0.03
898 104 0.03
899 2 0.00
901 2 0.00
902 3 0.00
903 2 0.00
904 4 0.00
905 6 0.00
906 8 0.00
907 34 0.01
908 126 0.04
909 85 0.03
910 47 0.01
911 3 0.00
913 2 0.00
914 347 0.11
915 143 0.05
916 3 0.00
917 3 0.00
918 23 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
AACGAGCGGGCGAGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGACTCGTT
TTCTATTTTTCACGATTTTCAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
AAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGT
CCCCTCTGCTACGTGCTGCT
Found at i:20471468 original size:11 final size:11
Alignment explanation
Indices: 20471452--20471484 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20471442 CGGTCAGGTT
*
20471452 CTCCGATGATG
1 CTCCGACGATG
20471463 CTCCGACGATG
1 CTCCGACGATG
20471474 CTCCGACGATG
1 CTCCGACGATG
20471485 GTGTCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:20471593 original size:26 final size:26
Alignment explanation
Indices: 20471564--20471615 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20471554 CTGATCCGAT
20471564 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20471590 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20471616 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20471805 original size:4 final size:4
Alignment explanation
Indices: 20471796--20471821 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
20471786 GACGAAATGA
20471796 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
20471822 ACTACGCCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:20472501 original size:26 final size:26
Alignment explanation
Indices: 20472472--20472524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20472462 CCGGTCCGAT
20472472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20472498 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20472524 C
1 C
20472525 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20473335 original size:26 final size:26
Alignment explanation
Indices: 20473299--20473351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20473289 CTGGTCTGAT
20473299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20473325 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20473351 C
1 C
20473352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20474235 original size:26 final size:26
Alignment explanation
Indices: 20474206--20474258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20474196 CCAGTCCGAT
*
20474206 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20474232 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20474258 C
1 C
20474259 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20475036 original size:881 final size:883
Alignment explanation
Indices: 20472799--20479760 Score: 8550
Period size: 882 Copynumber: 7.8 Consensus size: 883
20472789 TTTCATATTT
* * * * *
20472799 ATGGCAAGACGACTCATTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTTAGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
* * *
20472864 AAGATTATTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
20472929 ATACACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
20472994 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
20473059 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
20473124 CATCGCACATCATGTGCGCACACCCCCTCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTC
326 CATCGCACATCATGTGCGCACA--CCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * *
20473188 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATGTGGCACCAGCACA
388 GGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* ** * ** *
20473253 TGCCCCAGCCCAGCATGTGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
452 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
* * * *
20473318 CCGTATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCTGGC
517 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
20473383 GCTCAGTCGGCCAGAAGGGCAGGATGTGCAAGCCGGGGATCTGCTGGGTCTCCTTTTACGTGCTG
582 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC-CC-----CCT-CTG
* *
20473448 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGGTCTGATCTTAGACTGGTAATGAACTCCGTA
640 -CG----TGCTGCCACAACCCTCGGTC----C-GGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
20473513 TGCTTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
695 TGCCTAAGCCAACCGACGAAACGA-------A-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * *
20473578 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGT
752 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
20473643 GTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTT
817 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
20473708 TC
882 TC
* * *
20473710 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCGGTTC-GAGATTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAG-GATTTTT
* * *
20473774 TAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
65 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
20473839 CATGCAC-AAAAAATTTAGTTAAAAACTCGAAGTGTACAAGATTTTGAGATCATTTGAAAAAAGT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
20473903 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
20473968 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
20474033 CCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCATCAGAACCCCAATGCCGCCTG
325 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * *
20474097 TCAAGTTCTCCGACGATGCTACGACGATGGTGCCCC-AGTGAAGAAAAATGAGGCACCAGCACAT
390 TCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACAT
* ** * * * *
20474161 GCCCCAGCCTGGCATGGGCTGCTGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTC
453 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
* *
20474226 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCG
518 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
20474291 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAACCGGAGATCGGCCGGGT-CCCCTCTGCGTGCTGC
583 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC
* ** *
20474355 CACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG
648 CACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * *
20474420 AAACGAACGGACGGGCAGGCACTATGCCGGCTAGAGAGATGGGATGCGCAAGCTGTGCATCGATA
713 AAACGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
20474485 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCATGT
778 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
20474550 AAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTC
843 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
20474591 ATGGCAAGACGACTCGTTTT-TTTTCTTTCACGATTTTTAAAACTTTTTATGGTTCGGGATTTTT
1 ATGGCAAGACGACTCGTTTTCTATT-TTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTT
* *
20474655 TTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGG
65 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
20474720 CATGCACAAAAACATTCAGCTAAAAACGCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
** * * * * *
20474785 AACCCTATTTTAGACACTTTAATTGCTACTAGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
20474850 -GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
20474914 CCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCACCGG
325 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * *
20474978 TCAAGTTCTTCGACGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCATATG
390 TCAGGTTC-TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * *
20475043 CCCAAGCCCAGCATGGGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCT
454 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
** *
20475108 GTATGCTTAGACTGGTCATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
519 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* *
20475173 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT
584 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
** * ** * *
20475238 GTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGA
649 ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * ** * * *
20475303 AACGAGCAGACGGGTAGGCACCACGCCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAG
714 AACGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
20475368 GGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTCTTG-TGTGT
779 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT-TGT
* * *
20475432 AAATTCAAATAATGGTCCCTTAAGCCTTCAGGTGAAGTTTC
843 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
20475473 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTT-AGGGATTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCA-GGATTTTT
* * * *
20475537 TTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGG
65 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
20475602 CATGAACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
20475667 GTCCCCATTTCAGACACTTTAATGACTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
20475732 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACAAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
20475796 CCATCGCACATCATTTGCGAACACCCCCCCGGTCCCCCCGATCG-CTGGAACCCCAATGCCGTCG
325 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCG
* * * * * *
20475860 GTCATGTTCTCTAGCAATGCTTCGACGATGGTGCCCTGACGAAGAAAAAAGCGGCACCAGCACAT
389 GTCAGGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
** ** ** *
20475925 GTTCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTC
453 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
20475990 C-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
518 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
20476054 CTTAGCCGGCCAGAGGGGCGAGCTGCACAAGTCC-GGGATCGGCCGGGTCCCCCTCTGCATGTTG
583 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGGATCGGCCGGGTCCCCCTCTGC--G-TG
* * * *
20476118 CTGATCCTGCTGCCGTAACCCT-TGACCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
644 CTG---C--C--AC--AACCCTCGGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
20476182 TAAGCGAACCGATGAAACGAGCTGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
699 TAAGCCAACCGACGAAACGAAC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
20476247 GCAAGCCGTGGATCGATAGGCTGGTTGTTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
760 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
20476312 GCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTC
825 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * *
20476371 ATCGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTCGGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
** * * * *
20476436 AAAATTTTTTCAAAAGGATTTTTGTCCCCAAACTTGGTAGATGTGATCCTTGCATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
20476501 ATGCACAAAATAATTCAGCTAAAAACTCGAAGTGCACATGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
20476566 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAA
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA
20476631 -GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
20476695 CCATCGCACATCACGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGG
325 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
*
20476759 TCAGGTTCTC--CGA---T-----GATGGGGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
390 TCAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
20476814 TCGAGCCCAGCATGTGCTGCCGTAAACCTCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * *
20476879 TATGCTTAAACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAACGTACGGGCGCT
520 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** *
20476944 CAGCCGGCCAGAGAGGAAGGG-TGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCTACGTGTTGCC
585 CAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT-CCCC-CT-C----TG-C
* *
20477008 GATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
641 G----TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
20477073 GCCAACCGACGAAAC-AA---GCGGGCGGGCAGC-ACGCTGACCAGAGAGACGGGATGCGCAAGC
702 GCCAACCGACGAAACGAACGGGCGGGCGGGCA-CTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* ** * **
20477133 CGTGGATCGATAGGGCGGTAGGCAGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATT
766 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
20477198 TTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTC
831 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * *
20477251 ATGGCAGGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
* * * * *
20477316 AAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACATGGTGGACATGATCCTTGTAGTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
20477381 ATGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
20477446 TCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCACTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * **
20477511 GGGGTGTGACTTCTCGAGGTTTGATGAGGAATAGGGAGCAAATATAAGGGCCAAGTACCAGCATG
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * **
20477576 CATCGCACATCATGTGCACGCACCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGCCGCCAAT
326 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
* * * *
20477641 CAGGTTCTTCGACGATACTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATAC
391 CAGGTTC-TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
*
20477706 CCGAGCCCAGCATGTGCTGCTGCAA-CC-C--T-C-G---G----T---C------TG-A-TCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
20477747 -AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTT
520 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** *
20477810 CAGCCGGCCAGAGGGGCGGGATGCGTAAGTCAGGGATTGATCGAGTCCCCCTCTGCGTGCTGCCG
585 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-
* * * *
20477875 ATCCTGCTGCCGTAACCCTTGGTTCGGTCTGATCTTAGACTGGAAATAAACTCCGTATGCCTAAG
649 A---------C--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** ** *
20477940 CCAACCGACGATAGGAGTGGTCGGGCGGGCGGGCACTACGCCGAACAGAAAGACGGGATGCGCAA
703 CCAACCGACGA-A--A-CGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
20478005 ACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
764 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20478070 TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
829 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** * *
20478125 ATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTGCGATTCAGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
* * * * *
20478190 TAAATTTTTTCGAAAGGAGTTTTGTCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
20478255 ATGCACAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCTTTTG-AAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
20478319 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTTTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * *
20478384 AGGGTGTGAGTTCTCGAGGTTTGATGTGGGAGAGGGGGCGAATACAAGGGCCAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** * * *
20478449 CATCGCACATCATGTGCG-ACA-CCCCCCAGCCCCCCCAATCACCGGAACCACAATGTCGTCGGT
326 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
* * ** * * *
20478512 CAGGTTCTCCACCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAATTACGACACCAGCACATGC
391 CAGGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* *
20478577 CCGAGCCAAGCATGTGCTGCCGCAACACTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTTC
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAA---C
20478641 GTATGCCTAGACTGGGAATGAACTTCGTATGGCTAGACTGGGAATGAACTCCGTATGCCTAAGTC
516 ---T-CC--G--T----ATG-----C---T---TAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * *
20478706 AACCCACAAAATGAGCGTACGGGCAG-TCAACCGGTGAGAGGGGCGGGATGCACAAGCCGAGGAT
558 AACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** * * * * *
20478770 TGATCGGGTCCCCCTCTACGTGCTACCAATCCTACTACCGCAACCCTTGGTCTGGTTTGATCTTA
622 CGGCCGGGTCCCCCTCTGCGTG----C--TGC--C-A---CAACCCTCGGTCCGGTCTGATCTTA
* *
20478835 GACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGACCGGAGTGGGAGGGCGGGCGG
675 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----A-----CGGGCGGGCGG
* * *
20478900 GCACTACGCCGGCCAGAGAGATGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
731 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
20478965 GGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
796 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
20479030 CTTAAGCCTTCACGTGAAGTTTC
861 CTTAAGCCTTCACGTGAAGTTTC
20479053 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
* * * * ** * *
20479118 AAAATTTTTTCGGAAAGTGTTTTAG-CCCAAACTTGGTAAACGTGATCCCAGTGTTTTTCTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
20479182 ATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
20479247 TCCCCATTTCAGACTCTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
20479312 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAACATAAGGTCCAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
20479377 CATCACACATCATGTGTGCACA-CCCCCCGGCCCCTCTGATCGTTGGAACCCTAATGCCGCCGGT
326 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
** * * ** *
20479441 CAGGTTCTCTGGTGATGCTCCGACGATGGCGCCCCGACGAAGAAAAATGTGGCACCAATACGTGC
391 CAGGTTCTC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * *
20479506 CCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCATTCTGATCTTAGACTGGGAATGAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
20479571 TATGCTTAGATTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCT
520 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
*** * *
20479636 CAGCCGAAAAGAGGGGCGGGATGCTCAAGCCGGGGATCAGCCGGGTCCTCCTCTGCGTGCTGTCG
585 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT-C-CC-C--C-T-CTG-CG
* * *
20479701 ATGCGGCTGCCACAACCTTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
642 -T---GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
20479761 TTAGACTAGG
Statistics
Matches: 5288, Mismatches: 584, Indels: 366
0.85 0.09 0.06
Matches are distributed among these distances:
854 6 0.00
855 1 0.00
858 2 0.00
859 2 0.00
863 1 0.00
864 3 0.00
865 9 0.00
866 144 0.03
867 3 0.00
868 4 0.00
869 2 0.00
870 5 0.00
871 110 0.02
872 3 0.00
873 143 0.03
874 317 0.06
875 1 0.00
876 3 0.00
879 3 0.00
880 461 0.09
881 638 0.12
882 756 0.14
883 172 0.03
884 5 0.00
885 5 0.00
886 1 0.00
887 99 0.02
888 149 0.03
889 62 0.01
890 5 0.00
891 3 0.00
892 62 0.01
893 5 0.00
894 79 0.01
895 4 0.00
896 1 0.00
897 4 0.00
898 451 0.09
899 56 0.01
900 2 0.00
901 1 0.00
902 3 0.00
903 128 0.02
904 2 0.00
905 4 0.00
906 10 0.00
907 242 0.05
908 1 0.00
909 4 0.00
910 206 0.04
911 126 0.02
912 1 0.00
914 3 0.00
915 1 0.00
917 1 0.00
918 1 0.00
919 1 0.00
920 3 0.00
922 3 0.00
923 161 0.03
924 1 0.00
925 1 0.00
926 1 0.00
927 85 0.02
928 375 0.07
929 139 0.03
931 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
CAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAC
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
Found at i:20475128 original size:26 final size:26
Alignment explanation
Indices: 20475087--20475139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20475077 CTAGTCCGAT
20475087 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
**
20475113 CTTAGACTGGTCATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20475139 C
1 C
20475140 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20476004 original size:25 final size:26
Alignment explanation
Indices: 20475970--20476021 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20475960 CTGGTTCGAT
20475970 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
20475995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20476021 C
1 C
20476022 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20476886 original size:26 final size:26
Alignment explanation
Indices: 20476857--20476909 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20476847 CCGGTCCAAT
*
20476857 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20476883 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20476909 C
1 C
20476910 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20478658 original size:26 final size:26
Alignment explanation
Indices: 20478622--20478701 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
20478612 GATCCGATCT
20478622 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
*
20478648 TAGACTGGGAATGAACTTCGTATGGC
1 TAGACTGGGAATGAACTTCGTATGCC
*
20478674 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
20478700 TA
1 TA
20478702 AGTCAACCCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCC
Found at i:20479587 original size:26 final size:26
Alignment explanation
Indices: 20479549--20479601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20479539 CCATTCTGAT
* *
20479549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20479575 CTTAGATTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20479601 C
1 C
20479602 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20479763 original size:26 final size:26
Alignment explanation
Indices: 20479734--20479786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20479724 CCGATCCGAT
*
20479734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20479760 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20479786 C
1 C
20479787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20479836 original size:185 final size:185
Alignment explanation
Indices: 20479521--20479937 Score: 644
Period size: 185 Copynumber: 2.3 Consensus size: 185
20479511 CCCAGCATGT
*
20479521 GCTGCCACAACCCTTGGTCC-ATTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTAG
1 GCTGCCACAACCCTTGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
20479585 GAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGAAAAGAGG
65 GAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGAAAAGAGG
* * * * *
20479650 GGCGGGATGCTCAAGCCGGGGATCAGCCGGGTCCTCCTCTGCGTGCTGTCGATGCG
130 GGCGAGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGCATGCTGTCGATGCG
*
20479706 GCTGCCACAA-CCTTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
1 GCTGCCACAACCCTT-GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
* * **
20479770 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GAGCGCTCAGCC-AGCCAGA
65 GAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAG-GCGCTCAGCCGA-AAAGA
* *
20479833 GGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATGCG
128 GGGGCGAGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGCATGCTGTCGATGCG
*
20479891 GCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACT
1 GCTGCCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACT
20479938 GCAAATGCCT
Statistics
Matches: 212, Mismatches: 15, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
184 6 0.03
185 201 0.95
186 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (185 bp):
GCTGCCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
AATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGAAAAGAGGG
GCGAGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGCATGCTGTCGATGCG
Found at i:20482323 original size:25 final size:24
Alignment explanation
Indices: 20482268--20482324 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
20482258 CTATTTTTCA
*
20482268 CAATTTTTAAAAATTTTTACGGTT
1 CAATTTTTAAAAATTTTTACGGAT
* *
20482292 CAGATTTTTTAAAATTTTTTCGGAAT
1 CA-ATTTTTAAAAATTTTTACGG-AT
*
20482318 GAATTTT
1 CAATTTT
20482325 GGCCCCAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.07
25 23 0.85
26 2 0.07
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.51
Consensus pattern (24 bp):
CAATTTTTAAAAATTTTTACGGAT
Found at i:20483092 original size:874 final size:872
Alignment explanation
Indices: 20480984--20485374 Score: 5771
Period size: 875 Copynumber: 5.0 Consensus size: 872
20480974 GTTTGCTCGG
* *
20480984 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
20481049 AGAGGGGCGGAATGCCCAAGCCGGGGATCGGCCGTGTCCCCCTCTATGTGCTGCCGATCCTGCTA
66 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTG
* * * * *
20481114 CCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
131 CTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGAC
* *
20481179 GAAACGAACGGACGGGCGGGCGAGCGAACGGGCACTACGCCGGCCAGAGAGACGGGACGCGCAAG
195 GAAACGAAC--A--GGCGGGCG-G-G--CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * **
20481244 CTGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGCCAATGCCAT
252 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* * * *
20481309 TTTTATGGCTTGTAAATTCATACAATGGTCCTTTAGGCCTTCACATGAAGTTTAATGGCAAGACG
317 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * **
20481374 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTCCAAATTTTTTC
382 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * *
20481439 AGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAA
447 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20481504 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCTATTTCA
512 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20481569 GATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGT
577 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * *
20481634 TCTCAAGGTTTGATTAGGGATAGGGGACCAATATAAGGGCAAAGTACCAGCACCCATCGCACATC
642 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * **
20481699 ATGTGCGAACAGCCCCCCCGGCCCCCCCAATCTTCAGAACCCCAATGCCGTCGATCAGGTTCTCC
707 ATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCC
* * * * *
20481764 GACGATTCTTCGGCGATGGCGCCCCGACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
771 G-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
** * * *
20481829 CCCGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAG
835 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAA
* ** *
20481867 ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** * *
20481932 AGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGTTG-CAGATCCTACT
66 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCT
* * *
20481996 G-TAGCAACCCTCATTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
130 GCT-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-G
* * * * * *
20482060 ATGAAACGAGCGGGCGGACGGGCGGGCACTACGTCAGCCAGAGAGACGGGATTCGCAAGCCGTGG
193 ACGAAACGAACAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
20482125 ATCGATAGAGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGTGTGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* ** * * * *
20482190 GGCCTGTAAATTCATGTAATGGTCCCTTAAGCCTTCCCGTGCAGTTTCATGGCGAGACAACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
20482255 TTTCTATTTTTCACAATTTTTAAAAATTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGGAATG
388 TTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
20482319 AATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
20482384 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
20482449 TTAATTGCTTCTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* *
20482514 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
20482579 GCACACCACCCCCTGGCCCCCCCGATCGCCAGAACCCCAATGCTGTCGGTCAGGTTCTCCAGCGG
713 GCACACC-CCCCC-GGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCC-GCGA
* * *
20482644 TGCTCCGTCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGTCCAGCATGT
775 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
20482709 GCTGCCACAACCCTCGGTCTGGTCCGATCTTAA
840 GCTGCCACAACCCTCGGTCTGGTCCGATCTTAA
* * * * *
20482742 ACTGGGAAAGAACTCCGTTTGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
20482807 AGAGGGGCGGGATGCGCAAGCTGGGGATCGTCCGGGTCCCCCTCTGCATGCGGTTGATCCTGCTG
66 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTG
* * * * *
20482872 CTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGATTGAACTCCGTATGGCTAAGCCAACGAAC
131 CTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACG-AC
* * * * * *
20482937 GAAACGAACAGGCGGGTGGGCGGGCACTACGTCGGCCAGAAAGATGGGATGTGCACGTCGTGGAT
195 GAAACGAACAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * ** *
20483002 CGATAGGGTGGTGGGT-GGTTTAGGCAGATCTTCATATTTCTGCATGCCAATGCCATTTTGATGG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
* * * *
20483066 CTTGTAAACTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGATGACTCGTTT
325 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
20483131 TCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAT
390 TCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
20483196 TTTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCACGCACAAAAAAATTCAGC
455 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
20483261 TCAAAACTCTAAGTGTACAAGTTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
520 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20483326 AATCGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTG-GAGTTCTTGAGG
585 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
*
20483390 TTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
650 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * * * *
20483455 ACA-CCCCCCGGCCCCCTCGATCATCGGAATCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCT
715 ACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCC-GCGATGCT
* * * *
20483519 CCGGTGATGGGGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
779 CCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
20483584 CCACAACCCTCGGTCTGGTACGATCTTAGATTGCGAATGAACTCCGTATGCTTA
844 CCACAACCCTCGGTCT-G---G-TC--------CG-AT---CT---TA-----A
* *
20483638 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGGTCAGCCGGC
1 -ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
20483703 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTTTGCATGCTGTCAATCCTGCT
65 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCT
* * * * *
20483768 GCTGTAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAACCGA
130 GCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGA
* * *
20483833 CGAAATGAGCAGGTGGGCAGACGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCC
194 CGAAACGAACAGG-CGG--G-CGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCC
* * * *
20483897 GTAGATCGCTAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTATGTGCCAATGCCATTT
254 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* *
20483962 TTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCGAGACGAC
319 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
20484027 TCGTTTTCTATTTTTCACAACTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGG
384 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * * * *
20484092 AAGGATTTTTGGCACTAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTTGCGTGCAAAAAAAAA
449 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAA
* * * *
20484157 ATTAAGCTAACAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAG
513 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20484222 ACACTTTAAAGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
578 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
20484287 CTTGAGGTTTGATGAGGGATAGATGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
643 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * *
20484352 TGTATGCACACCCCCCCGG-CCACCCGATCGCCAGAACCCCAATG-C--C-ATC-GG---T-C-A
708 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCCGC
* * **
20484406 GATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCGTAGCAT
773 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
20484471 GTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAG
838 GTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAA
* * *
20484506 ACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* *
20484571 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTTGATCCTGCTG
66 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTG
* * ** * * *
20484636 CCGCAACCCTCAATCTAGTCCGATCTTAGA-TGGGGAAAGAGCTCCATATGCCTAAGCCAAC--C
131 CTGCAACCCTCAGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACGAC
* * * *
20484698 -AAA-GAA-ATGAGCGGGCGGGCGGGCACTACGTTGACGAGAGAGACGGGATGCGCAAGTCGTGG
195 GAAACGAACA-G-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
20484760 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
20484825 GGCTTGTAAATTCATACAATGGTCACTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACCCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
20484890 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAG
388 TTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
20484955 AGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGTA-AAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20485019 GCTAAAAACGCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20485084 TTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATACTTTTTAAGGGGGTGTGAGTTCTTGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
*
20485149 GGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
20485214 GCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCATCGGTCAGGTTCTCCGATGATG
713 GCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCCG-CGATG
* * *
20485278 CTTCGGCGATGGT--CCCGACGAAGAAAAATACGGC-TCAGCAACATGCCCGAGCCCCGCATGTG
777 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC-ACATGCCCGAGCCCAGCATGTG
20485340 CTGCCAGGGCAACCCTCGGTCCTGGTCCGATCTTA
841 CTGCCA---CAACCCTCGGT-CTGGTCCGATCTTA
20485375 GACTTGTTGG
Statistics
Matches: 3070, Mismatches: 371, Indels: 147
0.86 0.10 0.04
Matches are distributed among these distances:
856 8 0.00
857 218 0.07
858 2 0.00
859 263 0.09
860 2 0.00
861 3 0.00
862 7 0.00
863 4 0.00
864 1 0.00
865 5 0.00
866 47 0.02
867 165 0.05
868 14 0.00
869 10 0.00
870 13 0.00
871 118 0.04
872 6 0.00
873 5 0.00
874 480 0.16
875 745 0.24
876 6 0.00
877 1 0.00
878 1 0.00
879 9 0.00
880 2 0.00
882 2 0.00
883 175 0.06
884 2 0.00
885 2 0.00
888 4 0.00
889 1 0.00
891 2 0.00
892 1 0.00
893 75 0.02
895 1 0.00
896 2 0.00
897 179 0.06
898 4 0.00
899 2 0.00
900 5 0.00
901 55 0.02
902 201 0.07
903 121 0.04
904 93 0.03
905 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (872 bp):
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTG
CTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACG
AAACGAACAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCCGCGATGCTCC
GGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
ACAACCCTCGGTCTGGTCCGATCTTAA
Found at i:20483647 original size:26 final size:26
Alignment explanation
Indices: 20483608--20483660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20483598 CTGGTACGAT
*
20483608 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
20483634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20483660 C
1 C
20483661 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:20486663 original size:26 final size:26
Alignment explanation
Indices: 20486634--20486685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20486624 CGATCCGATA
20486634 TTAGACT-GTGAATGAACTCCGTATGC
1 TTAGACTAG-GAATGAACTCCGTATGC
20486660 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
20486686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:20487559 original size:26 final size:26
Alignment explanation
Indices: 20487521--20487573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20487511 CTGGTACGAT
*
20487521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20487547 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20487573 C
1 C
20487574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20488448 original size:26 final size:26
Alignment explanation
Indices: 20488411--20488463 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20488401 CCAGTCCAAT
20488411 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
20488437 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
20488463 C
1 C
20488464 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:20489347 original size:26 final size:26
Alignment explanation
Indices: 20489311--20489362 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20489301 CAGTCCAATT
20489311 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20489337 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20489363 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20490226 original size:26 final size:26
Alignment explanation
Indices: 20490197--20490247 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20490187 CGGTCCGATC
*
20490197 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
20490223 TTAGACTAGGAATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCCGTATG
20490248 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:20491138 original size:26 final size:26
Alignment explanation
Indices: 20491100--20491152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20491090 CCAGTTTGAT
20491100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
20491126 CTTAGATTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20491152 C
1 C
20491153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20492036 original size:26 final size:26
Alignment explanation
Indices: 20492000--20492052 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20491990 CCGGTTCGAT
*
20492000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20492026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20492052 C
1 C
20492053 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20492945 original size:26 final size:26
Alignment explanation
Indices: 20492907--20492958 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20492897 CTGGTTCGAT
* *
20492907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20492933 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20492959 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20493469 original size:898 final size:901
Alignment explanation
Indices: 20485378--20494086 Score: 11330
Period size: 898 Copynumber: 9.7 Consensus size: 901
20485368 GATCTTAGAC
*
20485378 TTGTTGGCATGCACAAAAAAATTCAACTAAAAAACTTCG-AGTGTACAAGA-TTTGTGACCATTT
1 TTGTTGGCATGCACAAAAAAATTCAGCT-AAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTT
* * * **
20485441 G-AAAAAGTTGGGTCCCCATTTCAGACACTTTAATGGCTATTGGCTGAAAACCTGTAAAATCTTG
64 GAAAAAAG-T--GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
20485505 AATTCACTTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGC
126 AATGCTCTTTAAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
20485570 CAAGTTCCAGCAGCCATCGCACATCATGTCCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC
190 CAAGTACCAGCACCCATCGCACATCATGT-CGCACACCCCCCGG-CCCCCCGATCGTCGGAACCC
** * * * * ** *
20485635 CAATGTTGCCTGTCAAGTTCT-C--CGA--------CGATGGTGCCCCAGCGAACAAAAATAAGT
253 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGG
* * * * * *
20485689 CTCCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTTGATCCGATCTTAGATTG
318 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * *
20485754 GGAATGAACTCCGTCTGCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACGA
383 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
20485819 GCGTGCGGGCGTTCCGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTTGGATCCCCCT
448 GCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
** * * * * ** *
20485884 CTGCGTGCTGCCGATCTTGCTGCCACAACCCTTGAACTGGTCTGATCTTAGACTGGGAATGAACT
513 CTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
* * *
20485949 CCGTATGCCTAAGCCAATCGACGAAACGA--GA--GGGCGGGCAGGCGGGCACTA-TTCGGCCAG
578 CCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAG
* *
20486009 AGAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATT
643 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
20486074 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTG
708 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * **
20486139 AAATTTCTTGGCAAGCCGACTCATTTTCTAGTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG
773 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG-G
* * * * *
20486204 G-TTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTCGTAGACGTGATCCTTCTATTT
837 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
20486268 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTG
* * * * * *
20486333 AAAATAGTGTCCCAATTTTAGACACTTTAATGGGTACTGGCAGCAAACCGGTAAAATGTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
20486398 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
130 CTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
20486463 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATTGTCGGAACCCCAAT-
195 ACCAGCACCCATCGCACATCATGT-CGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATG
* * *
20486527 --GCC-GTC-GG---T-CAG-GAT-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
258 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * * *
20486582 GCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGCT-TCGATCCGATATTAGACTGTGAA
323 GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAA
* * *
20486646 TGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGT
387 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * **
20486711 GCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGTGATCGACCGGGTCCCCCTCTGC
452 GCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * *
20486776 GTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
517 GTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
20486841 ATGCCTAAGCCAACCGAC-AAA--A-CGA----GCGGGCGGGCGGGCACTACGTCGGCTAGAGAG
582 ATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
20486898 ACGGGATGCGCAACCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
647 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
20486963 CATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGACTTCACGTGAAGT
712 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** * *
20487028 TTCATGGCAAGACGACTCGTTTTATATTTTTCACAATTTTTAAAACTTTTTATGGTTCGGGATTT
777 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA-TT
20487093 TTTTAAAATTTTTTCGGAAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
841 TTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
20487154 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
20487219 AAATAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
20487284 TCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
20487349 CCAGCACCCATCGCACATCATGTGCGCACA----CC--CCTCCAGATCGTCGGAA-CCCAATGCC
196 CCAGCACCCATCGCACATCATGT-CGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCC
* * * * * *
20487407 GCCGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCTGGCAAATAAAAATGCGGCACCAGC
260 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* *
20487472 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTGGTACGATCTTAGACTGGGAATGA
325 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
*
20487537 ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
390 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
20487602 GGTGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGTGATCGATCGGGT-CCCC-CT-C-TG
455 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
*
20487663 C-A--G---CTGCT---GCAACCCT-TGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
520 CTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20487718 CCGAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACG
585 CCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
* *
20487783 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTAT
650 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
20487848 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTC
715 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * ** ** * *
20487913 ATGGCAAGACAACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCAGGATTTTTT
780 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
* * * *
20487978 AAAATTTTTTCAGAAGGGGTTGTGGCCCCAAACTCGGTAGACGTGATCCTTGTATTT
845 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
20488035 TTGTTGGCATGCAAAAAAAAATTCAGCTACAAACTCGGAGTGTACAAGCTTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * * *
20488100 AAATAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGTAACAAACCTCTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
20488165 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
20488229 CTAGCACCCATCACACGTCCTGTGCGCACAACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
196 CCAGCACCCATCGCACATCATGT-CGCAC-A--CCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * * *
20488294 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGGCAAAGAAAAATGCGGTACC
257 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * * ** *
20488359 AGCACATGCTCGAGCCCAGTATTTGCTGCCGTAACCCTCGGTCCAGTCCAATCTTAGA-TCGGGA
322 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGGA
*
20488423 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCG
386 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * * * * *
20488488 TGCCGGTGCTCAGTCGACCAGAGGGGTGAGATGCACAAGTCAGGGATTGATCAGGTCCCCCTTTG
451 TGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * *
20488553 CGTGCT-GCTGATCCTGCTACCGCAACCCTTGGTCCGGTTCGATCTTAGACT-GGAATGAACTTC
516 CGTGCTATC-GATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
*
20488616 GTATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGAG
580 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAG
20488677 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
645 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
**
20488742 TATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
710 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * ** *
20488807 CTTTCATGGCAAGACGACTCATTTTCTATTTTTCATTATTTTCAAAACTTTTTGGGGTTCGAGAT
775 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGAT
* * * * *
20488872 TTTTTAAAATTTTTTTGGAAGGAGTTTT-ACCCCAACCTTGGTAGCCATGATCCTTGTATTT
840 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
20488933 TTGTTGGCATGCACAAAAAAATTCACCTGAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
20488998 AAAAAGTGTCCCCATTTTAGACACTTCAATGGCTATTGGCAGCAAACCTGTAAAATTTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * **
20489063 TCTTTAAGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAAAA
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
20489128 CCAGCACCCATCGCACATCATGTGCGCACACCCCCACCGGCCCCCCCGATCATCGGAACCCCAAC
196 CCAGCACCCATCGCACATCATGT-CGCACA-CCCC-CCGG-CCCCCCGATCGTCGGAACCCCAAT
* * * * * *
20489193 GCCGTCGGTTAGGTTCTTCGGCGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
257 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * * * *
20489258 CGCACATGCCTGAGCCCAGAATGTGCTGGCGCAACCCTCGGTGC-AGTCCAATTTTAGACTGGGA
322 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGA
* *
20489322 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAACGA---
386 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
20489384 ----GGCGCTCAGTCGGCCAGAGGGGCAGGCTACGCAAGCCGGGGATCTGTCGGGTCCCCCTCTA
451 TGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * ** *
20489445 CGTGTTATCAATCCTGCTACTGCAACCCTTGGTCCAGTCTGATCTTAG-CTGGGAATGAACTCCG
516 CGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* ** * * * *
20489509 TACGCCTAAGCCAATTGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCATTACGTCGGCCAAAGA
581 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
**
20489574 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGACAGGTGGGTTTAGGCACATCTTCATATTTCT
646 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
**
20489639 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAG
711 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
20489704 TTTCATGGCAAG-CTGACTCCTTTTCTATTTTTTAATGATTTTCGAAACTTTTTACGGCTCGGGG
776 TTTCATGGCAAGAC-GACTCGTTTTCTA-TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA
* ** * *
20489768 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACGTGAGCCTTTTATTT
839 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
20489831 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTGTGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTG
* *
20489896 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
** * *
20489961 CT-TTTTGAGGGGTTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
130 CTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
20490025 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGGCCCCCC-ATCGTCGGAACCCCAA
194 TACCAGCACCCATCGCACATCATGT-CGCACACCCCC-C-GGCCCCCCGATCGTCGGAACCCCAA
* * * * * *
20490089 TGCCGTCGGTCAGG-T-T----C-A-G---CAGAGATTGTGCCCCGACGAAGAAAAATACGGCAC
256 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * * *
20490143 CAGCAAATGCCCGAGCCTAGCATGTGCTATCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGA
321 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * * * * *
20490208 ATGAACTCCGTATGGTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCAAGGAACGAGCT
386 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
20490273 TGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCACAAGCCAGGGATCAGTCGGGTACCCCTCTG
451 TGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * * * **
20490338 CGTGCTGTCGATCCTGTTGCCACAAACCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
516 CGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * * *
20490403 TGTGTCTAGGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGACGGGCACTACGTCGGACAAAGA
581 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * *
20490468 GACGGGATGTGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTGCT
646 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
20490533 GCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
711 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * *
20490598 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTATGGTTTGAGATT
776 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATT
* * *
20490663 TTTTTAAATATTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
841 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * * *
20490724 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAACATTTTTTGACCATTTCA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
20490789 AAAAAGTATCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAAACTTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
20490854 TCTTTTAAGGGGAGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTA
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
20490919 CAAGCACCCATTC-CACATCATGTTAGCACACCCCCCCCGGCCCCCCGATTG-CTGGAACTCCAA
196 CCAGCACCCA-TCGCACATCATG-TCGCACA--CCCCCCGGCCCCCCGATCGTC-GGAACCCCAA
* * * * * * * * *
20490982 TGCCGCCAGTCCGGTTCTCTGGTGATGCTCCGGCGATGGTGTCTCGGTGAAGAAAAATACGACAC
256 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * ** **
20491047 CAGCACAAGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCAGTTTGATCTTAGACTGGGA
321 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * *
20491112 ATGAACTCCGTATGCTTAGATTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
386 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
20491177 TGCGGGTGCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGG-CCCCTCTCT
451 TGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC-CTCT
* * * * ** * *
20491241 ACGTGCTACCGATCCTGCTGCTGCAACCCTC-AACTGGTCTGATCTTAGACTGGGAATGAGCTCC
515 GCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* ** * * * *
20491305 GTATGCCTAAGCCAACTGACGAAACGAATGGGCGGGCAGGCGGGCGGGCACTACGCCGGGCAGAG
580 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAG
*
20491370 AGACGGGATGCACAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
645 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
20491434 TGCATGCCAATGCCCTTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAA
710 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
20491499 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGAT
775 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGAT
* * * *
20491564 GTTTTAAAATTTTGTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGATGTGATCCTTGTATTT
840 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
20491626 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
20491691 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * * * *
20491756 TCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGCGGGATAGGGGGCCAATATAAGTGCCAAGTG
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
20491821 CTAGCACCCATCGCACATCATGT-GCAACACCCCCTAGCCCCCCCGATCGTCGAAACCCCAACGC
196 CCAGCACCCATCGCACATCATGTCGC-ACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGC
* * * * ** ** *
20491885 CGCCGGTCAGGTTCTTCGGTGATGCTCCAGCGATGGTGCCTCGATGAAGAAAAATGCGGTGCTAG
259 CGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
* * * * * *
20491950 CACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATG
324 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* * *
20492015 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCATGC
389 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
20492080 GGGCGCTCAGCCGACCAGAGGGGCGGGATGGGCAAGCCGGGGATCGGCCGGGTCCACCTCTGTGT
454 GGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* * **
20492145 GCTA-CAGATCCTGCTACCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
519 GCTATC-GATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
20492209 TGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGTGGGCGGGCGGGCGGGCACTACGCCGGC
583 TGCCTAAGCCAACCGACGAAACGAGC----GAGC----GGGCGGGCGGGCGGGCACTACGTCGGC
* * *
20492274 CAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
640 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * **
20492339 ATTTCTTCATGCCAATACCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAAACTTCAC
705 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ***
20492404 GTGCAGTTTCACGGCAAGACGACTCGTATTCTATTTTTCATGATTTTCAAAACTTTTTGTTGTTC
770 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * * * *
20492469 AGGATTTTTTTAAATTTTTTTC-GAAGGAGTTTTGGTCCCAAACTTCGTAGACGTGGTCCTTGTA
835 GGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
20492533 TTT
899 TTT
20492536 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * * *
20492601 AAAAAGTATCCCCAATTCAAACAGTTTAATGGCAATTGGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
20492666 TCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
20492731 CCAGCTCCCATCGCACATCATGT-G-ACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
196 CCAGCACCCATCGCACATCATGTCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
* * * *
20492794 TCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCA
261 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * * * *
20492859 CATGCCCAAGTCCAGCATGTGCTGTCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAA
326 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
* * * *
20492924 CTCCGTATGCTTAGACTAGGAATGAACTCCATATGTCTAAGTCAACCCACGAAATGAGCGTGCGG
391 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
20492989 GCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGAGATCGGTCGGGTCCCCCTATGCCTGC
456 GCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
** * *
20493054 TATCGATCCTGCTATTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
521 TATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
20493119 CTAAGCCAACCAACAAAAAGAGC-AGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGG
586 CTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
20493183 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
651 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
20493248 CCTATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
716 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
20493313 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTA
781 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
*
20493378 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
846 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
20493434 TTGTTGGCATGCACAAAAAAATTCAG-TGCAAAACTCGAAGCGTGCAAGATTTTGTAACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
20493498 AAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
20493563 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
130 CTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
20493628 ACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGACCCCCTGATCGTCGGAACTCCAATGT
195 ACCAGCACCCATCGCACATCATGT-CGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * ** * * *
20493693 CGCAGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCAGTGAAGAAAAATACGGCACCAG
259 CGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
*
20493758 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATG
324 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* * *
20493823 AACTCCCTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT
389 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * *
20493888 GGGTGCTCAGCCTGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGTGT
454 GGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* * *** * * * *
20493953 GCTTTCGATCCTGTTGTTGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAATTTCGTAT
519 GCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * ** * * *
20494018 GCCTAAGCCAACCGACGAAACGAGCGAACGGGCGGGCAGGTGGGCGGTACGCCGACTAGAGAGAC
584 GCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
20494083 GGGA
649 GGGA
20494087 CATCTTCATA
Statistics
Matches: 6878, Mismatches: 803, Indels: 264
0.87 0.10 0.03
Matches are distributed among these distances:
874 51 0.01
875 10 0.00
877 7 0.00
878 21 0.00
880 57 0.01
881 222 0.03
882 210 0.03
883 2 0.00
884 25 0.00
885 356 0.05
886 244 0.04
887 17 0.00
888 582 0.08
889 88 0.01
890 252 0.04
891 22 0.00
892 272 0.04
893 259 0.04
894 228 0.03
895 5 0.00
896 181 0.03
897 106 0.02
898 721 0.10
899 635 0.09
900 279 0.04
901 401 0.06
902 443 0.06
903 148 0.02
904 230 0.03
905 4 0.00
907 328 0.05
908 9 0.00
909 55 0.01
910 394 0.06
911 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
TATCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
Found at i:20493844 original size:26 final size:26
Alignment explanation
Indices: 20493808--20493860 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20493798 CTGGTCCGAT
20493808 CTTAGACTGGGAATGAACTCCC-TATG
1 CTTAGACTGGGAATGAAC-CCCGTATG
20493834 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
20493860 C
1 C
20493861 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:20494684 original size:26 final size:26
Alignment explanation
Indices: 20494648--20494700 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20494638 CAGGTCCGAT
20494648 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
20494674 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20494700 C
1 C
20494701 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20494911 original size:840 final size:835
Alignment explanation
Indices: 20493410--20502857 Score: 2545
Period size: 902 Copynumber: 10.8 Consensus size: 835
20493400 GGCCCCAAAC
* *
20493410 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTGCAAAACTCGAAGC
1 TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGTGAAAAACTCGAAGC
*
20493475 GTGCAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
66 GTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20493540 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATA
*
20493605 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGACCC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC
* * * * ** *
20493670 CCTGATCGTCGGAACTCCAATGTCGCAGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCC
261 CCTCATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGACGATGGTGCCCC
* * ** * *
20493735 AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCT
326 AGTGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCGCAACCCTCGGTCA
20493800 GGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTATGCCTAA
391 GGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTATGCCTAA
* * **
20493865 GTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCTGCCAGAGGGGTGGGATGCACAAGCCGGGG
456 GTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAAGCCGGGG
** * * *** ** *
20493930 ATCGGCCAGGTCCCCCTCTGTGTGCTTTCGATCCTGTTGTTGTAACCCTCGGTCTGATCCGATCT
521 ATCGGCCAGGTCCCCCTCTACGTACTCTCGATCCTACAGCCGTAACCCTCGGTCCGATCCGATCT
* * * *
20493995 TAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGGGCGGGCAGGTG
586 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGCGGGCAGGCG
** *
20494060 GGCGGTACGCCGACTAGAGAGACGGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
651 GGCACTACGCCGACCAGAGAGACGGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
20494125 CTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTT
716 CTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTT
20494190 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
781 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
* * *
20494245 TTGGTAGACGTGATCCTTGTATTTTTGTT-ATACTGCACAAAAATATTCAGCT-AAAAACTCGAA
1 TTGGTAGACATGATCCTTGTATTTTTGTTGACA-TGCACAAAAAAATTCAG-TGAAAAACTCGAA
* *
20494308 GCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
64 GCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
20494373 CAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGA
129 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGA
**
20494438 TAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTG
194 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC--
* *
20494503 GCCCCCCTCCCATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGACACTCCGACGATG
256 GACCCCCT--CATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGACGATG
* * *
20494568 GTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGGTACCGTAACCC
319 GTGCCCCAGTGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCGCAACCC
** **
20494633 TCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTA
384 TCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTA
*
20494698 TGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAA
449 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAA
* * *
20494763 GCCGGTGATTGGCC-GGATCCCCTTCTACGTACTGCT-GATCCTACAGCCGTAACCCTCGGTCCG
514 GCCGGGGATCGGCCAGG-TCCCCCTCTACGTACT-CTCGATCCTACAGCCGTAACCCTCGGTCCG
* * **
20494826 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAACGGGCGGGC
577 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGC
** * * * **
20494891 GGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
642 GGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGA--C---A-TC-T---TC-ATA--TTTCTA
* *** * * * * * * *** * *
20494956 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTATGG--CTTGTAAAATC
694 CGT--GCCAATGC-CAT-TT--T-TAT-GGCTTGTAAAT-TCATACAT-TGGTCCCT-T--AAGC
* * * * * * *
20495019 ATACAATGGT-ACGTTAGGCCTTCACGTG-AAGTTTCATGGCCAGACGACTCGTTTTTTATTTTT
746 ---C--T--TCACGTGAAG-TTTGATG-GCAAG----AT-G--AGTCG--T--TTTC-TATTTTT
* * * * ** **
20495082 CACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-G-ACAAGAGTTTTGGCAACAA-ACTT
790 --CA----------C--GATTTTTGAAACTTTTTACGGTTCAAGA-TTTT-TTAA-AATTTTT
* * * *
20495142 AT--TAGACGTGATCCTTGTATTTTTGTTCG-CATGCACAAAAAATTTCAG-GTAAAAACTCAAA
1 TTGGTAGACATGATCCTTGTATTTTTGTT-GACATGCACAAAAAAATTCAGTG-AAAAACTCGAA
* * * *
20495203 GTGTACAAGATTTTATGACCATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
64 GCGTACAAGATTTTGTAACCA-TTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
20495268 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGTGGTTTGATGAGGG
128 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGG
** *
20495333 ATAGGGGGTCC-ATATAACAGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCGCC
193 ATAGGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CC
** * * ** ** *
20495397 CCCCGGCCCCTCCGATCG-CTAGAACCCCAATGCCGCCA-GTCAGGTTCTCCGACGATGCTCCGG
255 CGAC--CCCCT-C-ATCGTC-GGAACCCCAATGCC-ACAGGTCAGGTTCTCCGGTGACACTCCGA
* * * * *
20495460 C-ATTGGTG-CCCAGACGAAGAAAAATACGGCACCAGCACATGCCCGAGTCCAGCATGTGCTGCC
314 CGA-TGGTGCCCCAG-TGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACC
* * * *
20495523 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGC-----CT---AA-G--
377 GCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAA
* * *
20495577 --CC--A-ACCT-A-T------A--AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA-GG
442 CCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGA-GGGAAGGG
* ** * * ** * *** **
20495626 ATACGTAAGTCGGGGATCGGCC-GAGTTCCCCTCTGTGTGCTGC-CGATCCTGTTGCCAAAACCC
506 ATGCACAAGCCGGGGATCGGCCAG-GTCCCCCTCTACGTACT-CTCGATCCTACAGCCGTAACCC
* * ** * * *
20495689 TCGGTCTGGTTTGACCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC
569 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC
*** * *
20495754 GGGTGGGCGGGCGGACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGTCATG
634 GAACGGGCGGGC--A--GGC--G-G-GCACTACGCCGACCAGAGAGACGGGA--C---A-TC-T-
* ** * *** * * * * ** * * **
20495819 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCGTTTTTA
683 --TC-ATA--TTTCTACGT--GCCAATGC-CAT-TT--T-TAT-GGCTTGTAAAT-TC--ATACA
* *** *** * * * *
20495884 TGGCTTGTAAATTCATATAATGGTCAC-TTAAGCCTTCACGTG-AAGTTTCATGGCAAGAT-GAC
732 T---TGGTCCCTT-A-AGCCT--TCACGTGAAG-TTTGATG-GCAAG----AT-G--AG-TCG--
* * * * * * * *
20495946 TTGTTTTCTATTTT-TC-ACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTT
778 TT-TTCTAT-TTTTCACGA--TTTTTGAAAC-TTTTTACGGTTCAAGATTTTTTAAAA----TTT
20496009 GGAAGGAGTT
834 --------TT
* * * * *
20496019 TTGGCCCCAAACATATTAGACGTGATCCTCGTATTTTTGTTGGCATGCTCAAAAAAATTCA-TCT
1 TTGG------------TAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGT-G
* * * *
20496083 AAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
53 AAAAACTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
** *
20496148 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGGATGAAAGTTCTCGAGG
118 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGC
* * * * *
20496212 TTTGATGAGGGATAGGGGGGCAATATGAGGGCCAAGTACCAGTACCCTTCGCACATTATGTGCGC
182 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
20496277 ACAGCGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCC---G----
247 ACA-C-CCCCCGACCCCCTC-ATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACAC
** * * * *
20496335 ---G-CGATGGTGCCCTGGCGAAGAAAAATGC-AGCACCAGCACTTGCCCGAGCCCAGCATGTGC
309 TCCGACGATGGTGCCCCAGTGAAGAAAAATACGA-CACCAGCACATGCACGAGCCCAGCATGTGC
* *
20496395 TGCCACAACCCTCGGTCCA-GTCCGATC-T----T----A-G--------A--C-T--A---GGA
373 TACCGCAACCCTCGGT-CAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGA
* * * * ** *
20496433 ATGAACTCCGTATGCCTAACTCAACCCATGAAACGATCGTACGGGCGCTCAGTCGGCCAGAGGGG
437 ATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGA-GGG
* * ** * * * * *
20496498 CA-GGATGCGCAAGCCGGGGATCGATC-GTGTCCCCCTCTGCGTGCTAC-CGATCCTGCTGCCGC
501 AAGGGATGCACAAGCCGGGGATCGGCCAG-GTCCCCCTCTACGTACT-CTCGATCCTACAGCCGT
* *
20496560 AACCCTAGGTCCGGTCC-ATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
564 AACCCTCGGTCCGATCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * * *
20496624 ACG-A-G--TTGGCGGGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
628 ACGAACGAACGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGA----C-A-TC-T---
** ** * * * ** * ***
20496685 TCGATAGGGTGGCAGGTGGGTTTAGGCACAT-CATCATATTTCTGG-TTGCCAATGCCATTTTTA
683 TC-ATA---TTTC---TACG--T-GCCA-ATGC--CATTTTTATGGCTTGTAAAT-TCATACAT-
* * * * * * * *
20496748 TGG--CTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGA
733 TGGTCCCT-T-AA-GC---C--T--TCACGTGAAG-TTTGATG-GCAAG----AT-G--AGTCG-
* * * * *
20496809 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTCGAGACTTTTTAAAATTTTTTTG
778 -T--TTTC-TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAA-----TT-
20496874 AAAGGAGTTT
833 -------TTT
* * * *
20496884 TGACCCCAAACTAGGTAGACATGATCCATGTATTTTTGTGGGCATCCACAAAAAAATTCAGCT-A
1 T----------T-GGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGA
* * * * * * *
20496948 AAAACTCGAAGCATATAAGATATTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACATTTTAA
54 AAAACTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA
* * * *
20497013 TGGCTACTGCCAGCAAACCTGT-AAATCTGAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
119 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTT
* * * * * *
20497077 TGAAGAGGGATAGGGGGCCAAT-CAAGGGCCATGTACCAGCACCCATCGCAGAACATGTACGCAC
184 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * **
20497141 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCACTGCCATTGGTCAGGTTCTCCGGTG--A-T--G
249 ACCCCCCGACCCCCTC-ATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCG
* * ** * * *
20497201 -C-----T---CCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
313 ACGATGGTGCCCCAGTGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCG
* * * * ****
20497257 CAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAA
378 CAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTAT-GCTTAG---A--CTGGGA
* **** * * * * ** * * * *
20497322 AT-AA--GCG--TGCGGGTGCTCAACCGA-GGATCG-GTCGGGT-CCCCCTCTG-CGTG-C-TAC
437 ATGAACCCCGTATGCCTAAG-TCAACCCACGAAACGAG-CGTGTGGGCGCTCAGCCG-GCCAGAG
* *** * * * ** * ** * * ** *
20497376 CGATCTTGCTGCCGCAACCCTCGGTTC-G--A--T-CCGAT-TAAG-A-T-TGGGAAT-GAAC-T
499 GGA-AGGGATG-CACAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTACTCT-CG-ATCCTACAG
** ** * ** * * ** * *** * *
20497429 CCGTATGCCTAAG-CC-AACCG-TCAAAATGAGCAGGCG--TGCAGGCGGGCGGGCACTACGCCG
560 CCGTAACCCTCGGTCCGATCCGATC-TTA-GA-CTGG-GAATGAACTC-CGTATGC-CTAAGCCA
* * * * * ** ** * *
20497489 ACCTGA-GAGACAGGATACGTAA---GC-CGTAGATC--G-A-TAAGGTG-GTAGGTGGGTTTA-
619 ACC-GACGA-A-ACGA-ACG-AACGGGCGGGCAG-GCGGGCACTACGCCGACCA-GAGAG---AC
* * * * *
20497543 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCC
674 GGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCC
* * * *
20497608 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAA
739 CTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
20497673 CTTTTTGCGGTTCGAGATTTTTGAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAAC
804 CTTTTTACGGTTC-A-A-----G---ATTTTTT---AAA-A-TTTT---------T
* * * *
20497729 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAATATTCAGCT-AAAAACTCGAAG
1 TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGAAAAACTCGAAG
* * * * **
20497793 CGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATTGCTACTGAT
65 CGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
20497858 AGCAAACTTGTAAAATCTGAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
130 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGAT
* * * *
20497923 AGGGGGCCAATATAAGAGCCAAGTTCCAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCC
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC
* * * * * ** ** ** **
20497988 CCCCCAATCG-CTGGAATCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTAA
260 CCCTC-ATCGTC-GGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGACGATGGTGC
* * * * *
20498052 CCC-GACGAAGAAAAATGCGACACCAGTAAATGCCCGAGCCCAGCATGTGCT------ACCCTCG
323 CCCAG-TGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCGCAACCCTCG
* * * *
20498110 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
387 GTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTATGC
* * * * * * * *
20498175 CTAAGTCAACCCACGAAACGAGCATGCGAGTGCCCAACCAGCCAGAGGGGCAGGG-TGCACAAGC
452 CTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGA-GGGAAGGGATGCACAAGC
* * * ** * * *
20498239 CGAGGATCGACCAGATCCCTTTCAACGT--GCT-G-T--T---G-C--AACCCTCGATCCTG-TC
516 CGGGGATCGGCCAGGTCCCCCTCTACGTACTCTCGATCCTACAGCCGTAACCCTCGGTCC-GATC
* * * * * * **
20498291 TGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCATCCGATGAAATGAACGGGCGGGCGGG
580 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGCGGG
* * * * *
20498356 CGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGTGCAACCCGTGAATCGATAGGGTGGTAGGT
645 CAGGCGGGCACTACGCCGACCAGAGAGACGGGA----C-A-TC-T---TC-ATA------T---T
* * *
20498421 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
690 ---TCT----AC--GTGC------C-A-ATGCC-AT----TT-TTATGGCTTGTAAATTCATAC-
* * * *
20498486 ATT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGCGAT
731 ATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTTTCTATTTTTCACGAT
* * *
20498550 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
796 TTTTGAAACTTTTTAC------GG----TTCAAGATTTTTT-A-AA--A-TTTT---------T
* * * * * * *
20498614 TTGGTAGACTTGATCCTTGTACTTTTGTTGGCATGCACAACAATATTCAGCT-AAAAAGTCAAAG
1 TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGAAAAACTCGAAG
* * * *
20498678 CGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGAC
65 CGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
20498743 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
130 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGAT
* * * * *
20498808 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGTGCACACCCCCTGGCC
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CG-A
* * * ** ** **
20498873 CCCCCTGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGACGATGCTCCGGTGATGGTG
258 CCCCCTCATCGTCGGAACCCCAATGCC-ACAGGTCAGGTTCTCCGGTGACACTCCGACGATGGTG
* * * * * *** * *
20498937 CCCC-GACGAAGAAAAATGCGACACCAGCACATGTC-GGAGCCTAGCATGTGCTGCTATAGCCGT
322 CCCCAG-TGAAGAAAAATACGACACCAGCACATG-CACGAGCCCAGCATGTGCTACCGCAACCCT
* * * * * * * *
20499000 CAGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTAT
385 CGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTAT
* * ** ** ** *
20499065 GCCTAAGTCAACGCACGATACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAAATGCGCAAG
450 GCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAAG
* * * * * * *** * *
20499130 CCAGGGATCGGCCGGGTCTCCCTCTACATGCTAC-CAATCCTGTTG-CATCAACCCTCGGTCCGG
515 CCGGGGATCGGCCAGGTCCCCCTCTACGTACT-CTCGATCCTACAGCCGT-AACCCTCGGTCCGA
** * * * * *
20499193 TGTGGTCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCG
578 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGCG
* * ** * **
20499258 GGCGGGCAGGCACTACGCC-AGGTAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTA
643 GGCAGGCGGGCACTACGCCGA-CCAGAGAGACGGGA----C-A-TC-T---TC-ATA--TTTCTA
* ** * * * ** * * ***
20499322 GGTGGGTTTAGGCACGTCTTCATATTTCTGCATGCCAATGCTATTTTTATGGC-TT-GTAAATTC
694 CGT--G-CCA---ATG-C--CAT-TTT-T--ATGGC-TTG-TAAATTCAT-ACATTGGTCCCTT-
* * * ** * * *
20499385 ATA-CAATGCTC-CCTTAAGCCTTCACAT-G-AAGTTTCATGGCAAGACAACTCGTTTTCTATTT
742 A-AGC-CT--TCACGTGAAG--TT-TGATGGCAAG----AT-G--AGTC--GT--TTTC-TATTT
* * *
20499446 TTCATGATTTTTGAAACATTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
788 TTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAA-----T---------TTTT
* * * *
20499508 GGCCCCAACCTTGGTAGACGTGATCCTTTTATTTTTGTT-AGTATGCTCAAAAAAATTCAGCT-A
1 ----------TTGGTAGACATGATCCTTGTATTTTTGTTGA-CATGCACAAAAAAATTCAG-TGA
* * * * * * *
20499571 AAAACTTGAAGTGTACAACATTTTGTGACCATTTGGAAAAACTGTCCCCATTTAAGACACTTTAA
54 AAAACTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA
* * *
20499636 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
119 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTT
* * *
20499701 TGATGAGGGATAGGGGGCCGATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCAC
184 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * ** ** *
20499766 AGCCCCCTCGACCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAAGTTCTTCGACGATGCTT
249 A-CCCCC-CGACCCCCTC-ATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTC
** * ** * * * * * *
20499831 CGGTGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGGACATGCTCCGATGATGCTCCGGCGAT
311 CGACGATGGTGCCCCAGTGAAGAAAAATACGACACCAGCACATG---C-ACGA-GC-CCAGC-AT
* * *** * * * * ** *
20499896 GGTGC-CCCGACGAAGAAAAATGCACCACCAAAACATGCCCAAGCCCAGCATGTGCTGCCGAAAC
369 -GTGCTACCG-C-------AA--C-CC-TC-GGTCAGGTCCGATCTTAG-A----CTG--GGAA-
** * *
20499960 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCTATATGCATAGACTAGGAATGAACTCCG
412 --T-GAAC---TCC---C-T---------ATG----C----T---TAGACTGGGAATGAACCCCG
* * * * * * *
20500025 TATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCAAACAGG-CGGGATGCA
447 TATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGA-GGGAAGGGATGCA
** * * * * * * * * ** ** *
20500089 CAAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTGTTGATCCTGCTCCCACAACCCTCGGTCT
511 CAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTACTCTCGATCCTACAGCCGTAACCCTCGGTCC
* * ** *
20500154 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG---A--GACGGGATG--CGCAA---
576 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG-AACGG
* * ** ** * * * *
20500209 GCTGTGG-A-TC--G-A-TAGGGTG-GTAGTGGGTTTA-GGCACATCTTCATATTTCTATGTGCC
640 GC-G-GGCAGGCGGGCACTACGCCGACCAGAGAG---ACGGGACATCTTCATATTTCTACGTGCC
** * * *
20500266 AATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
700 AATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATG
** * * *** * *
20500331 GCAAGACAACTCGTTTTCTATTTTTCATGATTTCCAAAACTTTTTACCGTTCGAGATTTTTTAAA
765 GCAAGATGAGTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-----CG-G----TTCAAG
20500396 ATTTTTTCGAAAGAATTTTT
820 ATTTTTT---AA-AATTTTT
* * *
20500416 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCT-AA
1 ----------TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGAA
* * * **
20500480 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATGCTTTAAT
55 AAACTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAT
* * * * * *
20500545 TGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGCTCTCAAGGTTT
120 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTT
* * *
20500610 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCACGTGCACACA
185 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * ** **
20500675 CCCCCTGGCCCCC-CGATCGTCAGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATGCTCCGA
250 CCCCCCGACCCCCTC-ATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGA
* * ** * * * * *
20500739 CGATGGTG-CCCAGACGAAGAAAATTGTGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCCG
314 CGATGGTGCCCCAG-TGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCG
* * * *
20500803 TAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACT-CCTCAGGCTTAGACAGGGAATGA
378 CAACCCTCGG-TCAGGTCCGATCTTAGACTGGGAATGAACTCCCT-ATGCTTAGACTGGGAATGA
** * * * * * *
20500866 ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTTAGCCGGCTAGAAGGGTA-G
441 ACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAG-AGGGAAGG
* ** * * * * * *
20500930 GACGGGCAAGCCGGGGATCGACCGGGTCCCCTTCT--GT-CTGCTACCGATCCTGCTGCCGCAAC
505 GATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTACT-CT--CGATCCTACAGCCGTAAC
* * * *
20500992 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACG-
567 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
20501056 A-G---GGGACGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
632 ACGAACGGG-CGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGA----C-A-TC-T---TC-
* * *
20501117 ATAGGGTGATAGGTCGGTTTAGGCACATCTTCATATTTCTAAGTGTCAATGCCATTTTTATGGCT
685 ATA---T--T---TC----T----AC--GTGC------C-AA-TG-CCAT----TT-TTATGGCT
* * * * * *
20501182 TGTGAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTC
718 TGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTTTC
* * * *
20501247 TATTTTTCAAGATTTTCGAAACTTTTTACGCTTTGAGATTGTTTTAAATTTTTTCGAAAGGAGTT
783 TATTTTTCACGATTTTTGAAACTTTTTACG-GTTCA-A--G------ATTTTTT--AAA--A-TT
*
20501312 TTGGCCCCAAAC
833 TT---------T
* * * * *
20501324 TTGGTAGACGTGATCCTTTTATTTTTGTTGCCATGCACAAAAACATTTAGCT-AAAAACTCGAAG
1 TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGAAAAACTCGAAG
* * * * *
20501388 TGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTTATGGCTACTGGC
65 CGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
20501453 AGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
130 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGAT
* * * *
20501518 AGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGGCC
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC
* * ** * * ** *
20501583 CCCCCGATCGTCGG-ACCCTTAATGCTGCCGGTCAGGTTCTCCGATGATGCTCC-AGTGATGGTG
260 CCCTC-ATCGTCGGAACCC-CAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGA-CGATGGTG
** * * * * *
20501646 CCCC-GACAAAGAAAAA-AGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCT
322 CCCCAG-TGAAGAAAAATA-CGACACCAGCACATGCACGAGCCCAGCATGTGCTACCGCAACCCT
* * * * * *
20501709 CGGTCCGATCCGATCATAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
385 CGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTAT
* * * * * ** * *
20501774 GCCTAACTGAACCCACGAAACGAGCGTGAGGGTGCTCAACCGGCCAGAGGGGTGGGATACATAAG
450 GCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAAG
* *** * * * * * * *
20501839 CCGAGGATCGGTGGGGTCCCTCTCTATGTGCTGC-CGATCCTGCTGCCGTAACCCTCGGTCTGGT
515 CCGGGGATCGGCCAGGTCCCCCTCTACGTACT-CTCGATCCTACAGCCGTAACCCTCGGTCCGAT
* * * * * * * * * *
20501903 CCAACCTTAGACAGGGAATGAACTTCATATGCCTAAGGCAACCGATGAAACGAGCG-GCCGGCGG
579 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGCGG
* * *
20501967 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGTCGTGAATCGATAGGGTGGTAGG
644 GCAGGCGGGCACTACGCCGACCAGAGAGACGGGA----C-A-TC-T---TC-ATA---T--T---
* *
20502032 TGGGATTAGGCACAT-CTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATA
690 T----CT----ACGTGC--C--A-------ATGCC-AT----TT-TTATGGCTTGTAAATTCATA
* * * * * * **
20502096 AAATGGTCCCTTAAGACTTCACGTCAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCGTGA
730 CATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTTTCTATTTTTCACGA
**
20502161 TTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTT
795 TTTTTGAAACTTTTTACGGTTCAAG----------ATTTTTT--AAA--A---TTTTT
* * * *
20502219 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCT-AAAAA
1 -------TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG-TGAAAAA
* * *
20502283 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGC
58 CTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
* * *
20502348 TACTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGAT
123 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGAT
*
20502413 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCACACCC
188 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* ** * * * *
20502478 CCCCG-CCCCCCCGATCACCTGAACCCCACTGCCGCCGGTCAGG---T----T----CTCCGACG
252 CCCCGACCCCCTC-ATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGACG
* * * ** **
20502531 ATGGTGCACCGGTGAAGAAAAATAC-AGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCTTCA
316 ATGGTGCCCCAGTGAAGAAAAATACGA-CACCAGCACATGCACGAGCCCAGCATGTGCTACCGCA
* * *
20502595 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-TATAGACTGGGAATGAACT
380 ACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCCTATGCT-TAGACTGGGAATGAACC
* * * * * * **
20502659 CCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATG
444 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATG
* * ** * * * * * * *
20502724 CGCAAGTCGGGGATCGGCTGGGTCTCCCTCTACATGCTGC-CGATCTTGCTGCCGCAACCCTCGG
509 CACAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTACT-CTCGATCCTACAGCCGTAACCCTCGG
* * ** * * * * *
20502788 TCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCCAACCGATGAAATGAACGGAC
573 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAAC
20502853 GGGCG
638 GGGCG
20502858 AGCACTACGC
Statistics
Matches: 6717, Mismatches: 1145, Indels: 1445
0.72 0.12 0.16
Matches are distributed among these distances:
834 155 0.02
835 296 0.04
836 90 0.01
837 1 0.00
838 14 0.00
839 11 0.00
840 363 0.05
841 20 0.00
842 22 0.00
843 23 0.00
844 77 0.01
845 13 0.00
846 14 0.00
847 164 0.02
848 5 0.00
849 3 0.00
850 55 0.01
851 7 0.00
852 11 0.00
853 9 0.00
854 8 0.00
855 21 0.00
856 18 0.00
857 77 0.01
858 9 0.00
859 7 0.00
860 54 0.01
861 12 0.00
862 47 0.01
863 60 0.01
864 246 0.04
865 44 0.01
866 27 0.00
867 13 0.00
868 7 0.00
869 6 0.00
870 15 0.00
871 160 0.02
872 23 0.00
873 18 0.00
874 22 0.00
875 21 0.00
876 217 0.03
877 21 0.00
878 23 0.00
879 138 0.02
880 10 0.00
881 8 0.00
882 11 0.00
883 28 0.00
884 24 0.00
885 376 0.06
886 104 0.02
887 45 0.01
888 20 0.00
889 24 0.00
890 159 0.02
891 356 0.05
892 147 0.02
893 10 0.00
894 17 0.00
895 84 0.01
896 175 0.03
897 171 0.03
898 364 0.05
899 293 0.04
900 11 0.00
901 12 0.00
902 456 0.07
903 20 0.00
904 373 0.06
905 157 0.02
906 7 0.00
907 6 0.00
908 261 0.04
909 5 0.00
910 2 0.00
911 4 0.00
912 3 0.00
913 8 0.00
914 1 0.00
916 1 0.00
917 1 0.00
918 14 0.00
919 3 0.00
920 6 0.00
921 6 0.00
922 6 0.00
923 10 0.00
924 7 0.00
925 10 0.00
926 1 0.00
927 1 0.00
928 3 0.00
929 3 0.00
930 3 0.00
931 1 0.00
932 4 0.00
935 2 0.00
936 3 0.00
938 5 0.00
939 3 0.00
940 3 0.00
941 2 0.00
943 1 0.00
944 1 0.00
945 2 0.00
946 1 0.00
947 1 0.00
949 6 0.00
950 3 0.00
951 4 0.00
952 4 0.00
954 3 0.00
955 1 0.00
956 5 0.00
957 1 0.00
958 7 0.00
960 2 0.00
963 154 0.02
964 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (835 bp):
TTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGTGAAAAACTCGAAGC
GTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC
CCTCATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTCCGGTGACACTCCGACGATGGTGCCCC
AGTGAAGAAAAATACGACACCAGCACATGCACGAGCCCAGCATGTGCTACCGCAACCCTCGGTCA
GGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGAAGGGATGCACAAGCCGGGG
ATCGGCCAGGTCCCCCTCTACGTACTCTCGATCCTACAGCCGTAACCCTCGGTCCGATCCGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGAACGGGCGGGCAGGCG
GGCACTACGCCGACCAGAGAGACGGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAGTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
Found at i:20498158 original size:26 final size:26
Alignment explanation
Indices: 20498122--20498174 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20498112 CTGGTCTGAT
20498122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20498148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20498174 C
1 C
20498175 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20499043 original size:26 final size:26
Alignment explanation
Indices: 20499014--20499064 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20499004 CCGATCTGAT
20499014 CTTAGACTGAGAATGAACTCCGTATA
1 CTTAGACTGAGAATGAACTCCGTATA
*
20499040 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
20499065 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATA
Found at i:20499503 original size:904 final size:884
Alignment explanation
Indices: 20497417--20499880 Score: 3457
Period size: 885 Copynumber: 2.8 Consensus size: 884
20497407 CGATTAAGAT
* * * *
20497417 TGGGAATGAACTCCGTATGCCTAAGCCAACCGTCAAAATGAGC-AGGCGTGCAGGCGGGCGGGCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGA-GCGGGCGGGCGGGCGGGCA
** * * * * *
20497481 CTACGCCGACCT-GAGAGACAGGATACGTAAGCCGTAGATCGATAAGGTGGTAGGTGGGTTTAGG
65 CTACGCC-AGGTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
20497545 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCT
129 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GTCCCT
*
20497610 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACT
193 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
20497675 TTTTGCGGTTCGAGATTTTTGAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGT
258 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
20497740 GATCCTTGTATTTTTGTTGGCATGCAGAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATTT
323 GATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATTT
* * *
20497805 TGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATTGCTACTGATAGCAAACTTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTA
*
20497870 AAATCTGAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
20497935 TAAGAGCCAAGTTCCAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCCCCCCCAATCG-C
518 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTC
* **
20497999 TGGAATCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTAACCCGACGAAGAA
583 -GGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
* * * * *
20498064 AAATGCGACACCAGTAAATGCCCGAGCCCAGCATGTGCTACCCTCGGTCTGGTCTGATCTTAGAC
647 AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCCTCAGTCCGATCTGATCTTAGAC
* *
20498129 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
712 TGAGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * **
20498194 GAGCATGCGAGTGCCCAACCAGCCAGAGGGGCAGGGTGCACAAGCCGAGGATCGACCAGATCCCT
777 GAGCATACGAGCGCCCAACCAGCCAGAGGGGCAGAATGCACAAGCCGAGGATCGACCAGATCCCT
* * *
20498259 TTCAACGTGCTGTTGCAACCCTCGATCCTGTCTGATCTTAGAC
842 TTCAACATCCTGTTGCAACCCTCGATCCGGTCTGATCTTAGAC
* * * * * *
20498302 TGAGAATGAACTTCGTATGCCTAAGCCATCCGATGAAATGAACGGGCGGGCGGGCGGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGGGCAC
* * * *
20498367 TACGTC-GGCTAGAGAGACGGGATGTGCAACCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGC
66 TACGCCAGG-TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
20498431 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-TGTCCCTT
*
20498496 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGCGATTTTTGAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * *
20498561 TTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTG
259 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
20498626 ATCCTTGTACTTTTGTTGGCATGCACAACAATATTCAGCTAAAAAGTCAAAGCGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATTTT
20498691 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTAA
20498756 AATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
454 AATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
20498821 AAGGGCCAAGTACCAGTACCCATCACACATCATGTGTGCACACCCCCTGGCCCCCCCTGATCGTC
519 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCC-GATCGTC
*
20498886 GGAACCCCAATGCCGTCGGTCAGGTTC-TCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
583 GGAACCCCAATGCCGCCGGTCAGGTTCTTC-GACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
* * * *
20498950 AAATGCGACACCAGCACATGTCGGAGCCTAGCATGTGCTGCTATAGCCGTCAGTCCGATCTGATC
647 AAATGCGACACCAGCACATGCCCGAGCCCAGCA--TG-TGC--TA-CCCTCAGTCCGATCTGATC
*
20499015 TTAGACTGAGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCA
706 TTAGACTGAGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
20499080 CGATACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGC-GAAATGCGCAAGCC-AGGGATCGGCC
771 CGAAACGAGCATACGAGCGCCCAACCAGCCAGAGGGGCAG-AATGCACAAGCCGA-GGATCGACC
* * * * * *
20499143 GGGTCTCCCTCTACATGCTACCAATCCTGTTGCATCAACCCTCGGTCCGGTGTGGTCTTAGAC
834 -AG-ATCCCT-T---T-C-AAC-ATCCTGTTG---CAACCCTCGATCCGGTCTGATCTTAGAC
* *
20499206 TGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCAGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGGGCAC
* *
20499271 TACGCCAGGTAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCAGGTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20499336 CGTCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG-TCCCTTA
* * * *
20499401 AGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACATT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
20499466 TTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCTTGGTAGACGTGA
260 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * * * * *
20499531 TCCTTTTATTTTTGTTAGTATGCTCAAAAAAATTCAGCTAAAAACTTGAAGTGTACAACATTTTG
325 TCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATTTTG
* * * * *
20499596 TGACCATTTGGAAAAACTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
390 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTAAA
* * * * *
20499661 ATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCGATATG
455 ATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
20499726 AGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACAGCCCCCTCGACCCCCCCGATCGTC
520 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCT-GGCCCCCCCGATCGTC
* * * * * *
20499791 GGAACCCCAATGCCACCGGTCAAGTTCTTCGACGATGCTTCGGTGATGGTGCCCCGGCAAAAAAA
583 GGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
* *
20499856 AATGCGGCACCAGGACATGCTCCGA
648 AATGCGACACCAGCACATGC-CCGA
20499881 TGATGCTCCG
Statistics
Matches: 1393, Mismatches: 153, Indels: 45
0.88 0.10 0.03
Matches are distributed among these distances:
884 1 0.00
885 524 0.38
886 90 0.06
887 1 0.00
888 2 0.00
889 3 0.00
891 4 0.00
892 124 0.09
893 1 0.00
894 5 0.00
895 1 0.00
898 1 0.00
899 1 0.00
900 2 0.00
901 7 0.01
903 2 0.00
904 524 0.38
905 87 0.06
906 13 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (884 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGGGCAC
TACGCCAGGTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTAAAA
TCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAT
GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCCTCAGTCCGATCTGATCTTAGACTGAG
AATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
ATACGAGCGCCCAACCAGCCAGAGGGGCAGAATGCACAAGCCGAGGATCGACCAGATCCCTTTCA
ACATCCTGTTGCAACCCTCGATCCGGTCTGATCTTAGAC
Found at i:20499932 original size:58 final size:58
Alignment explanation
Indices: 20499824--20499933 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 58
20499814 GTTCTTCGAC
* * * ** **
20499824 GATGCTTCGGTGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGGACATGCTCCGAT
1 GATGCTCCGGCGATGGTGCCCCGACAAAAAAAAATGCACCACCAAAACATGCTCCGAT
* *
20499882 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCACCACCAAAACATGC
1 GATGCTCCGGCGATGGTGCCCCGACAAAAAAAAATGCACCACCAAAACATGC
20499934 CCAAGCCCAG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 43 1.00
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (58 bp):
GATGCTCCGGCGATGGTGCCCCGACAAAAAAAAATGCACCACCAAAACATGCTCCGAT
Found at i:20500028 original size:26 final size:26
Alignment explanation
Indices: 20499979--20500029 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20499969 GGTCCGATCT
* * *
20499979 TAGACTGGGAATGAATTCTATATGCA
1 TAGACTAGGAATGAACTCCATATGCA
*
20500005 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
20500030 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCA
Found at i:20501754 original size:26 final size:26
Alignment explanation
Indices: 20501725--20501775 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20501715 GATCCGATCA
*
20501725 TAGACTTGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
20501751 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
20501776 CTAACTGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Done.