Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 115 of 117
Found at i:20503054 original size:41 final size:41
Alignment explanation
Indices: 20502997--20503082 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
20502987 CCCTTAAGCC
* * *
20502997 TTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTT
1 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTACTATTT
* *
20503038 TTCACATGAAGTTTCATGGCAAGATGACTTGTTTACTATTT
1 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTACTATTT
20503079 TTCA
1 TTCA
20503083 TGATTTTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.42
Consensus pattern (41 bp):
TTCACATGAAGTTTCATGGCAAGACGACTCGTTTACTATTT
Found at i:20504463 original size:26 final size:26
Alignment explanation
Indices: 20504426--20504475 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20504416 CTAGTCCAAT
*
20504426 CTTAGACTGGGAATGAACTTCGTAAC
1 CTTAGACTGGGAATGAACTCCGTAAC
20504452 CTTAGA-TAGGGAATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
20504476 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAC
Found at i:20506230 original size:26 final size:26
Alignment explanation
Indices: 20506192--20506244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20506182 TCGATCCAAT
20506192 CTTAGACTAGGAATGAAC-TCCGTATG
1 CTTAGACTAGGAATGAACAT-CGTATG
*
20506218 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTAGGAATGAACATCGTATG
20506244 C
1 C
20506245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACATCGTATG
Found at i:20507971 original size:26 final size:26
Alignment explanation
Indices: 20507942--20507994 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20507932 CCAGTCCGAT
*
20507942 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGCAATGAACACCGTATG
20507968 CTTAGACTGGCAATGAACACCGTATG
1 CTTAGACTGGCAATGAACACCGTATG
20507994 C
1 C
20507995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACACCGTATG
Found at i:20511563 original size:26 final size:26
Alignment explanation
Indices: 20511534--20511586 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20511524 TCGATCCGAT
*
20511534 CTTAGACTGGGAAAGAATTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
20511560 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20511586 C
1 C
20511587 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:20512463 original size:26 final size:26
Alignment explanation
Indices: 20512427--20512505 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20512417 TTGGTCTGAT
* *
20512427 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20512453 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20512479 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20512505 C
1 C
20512506 CTCAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20514789 original size:26 final size:26
Alignment explanation
Indices: 20514760--20514838 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20514750 CCGGTCTGAA
* *
20514760 CTTAGACTCGGAATAAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
20514786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
20514812 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
20514838 C
1 C
20514839 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:20516351 original size:26 final size:26
Alignment explanation
Indices: 20516322--20516400 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20516312 CCGGTCTGAT
* *
20516322 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20516348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20516374 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20516400 C
1 C
20516401 CTAAGTCAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20518963 original size:26 final size:26
Alignment explanation
Indices: 20518925--20518974 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20518915 CCGGTCCGAT
* *
20518925 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
*
20518951 CTTAGACTTGGAATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
20518975 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:20519859 original size:26 final size:26
Alignment explanation
Indices: 20519823--20519875 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20519813 CCAGTTCGAT
*
20519823 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20519849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20519875 C
1 C
20519876 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20520743 original size:26 final size:26
Alignment explanation
Indices: 20520714--20520766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20520704 TCGGTCCGAT
*
20520714 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
20520740 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
20520766 C
1 C
20520767 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:20522092 original size:903 final size:903
Alignment explanation
Indices: 20517300--20522499 Score: 7063
Period size: 903 Copynumber: 5.8 Consensus size: 903
20517290 GGTTCTCCTG
* * *
20517300 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAATGAGC--G-GGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * * *
20517362 GGTGGGCACTACGCCGGTCAGCGAGACGGGATGTGCAAGCCATGGATCGATAGAGTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*** **
20517427 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGAAATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20517492 GGTCTCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
196 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * * *
20517557 TGAAACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGG
261 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACTTGG
* * *
20517622 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
326 TAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20517687 AAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAA
391 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
20517752 ACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
20517817 GCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCACATAACGCCCCCCGGGCCC
521 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCA-CAC-CCCCCC-GGCCC
* * * *
20517882 CCCGATCGTCGGAACCCCAATCCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC
583 CCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * *
20517947 GACGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAGCATGTGTTGCCATAACCCTCGG-TC
648 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTC
* * * * *
20518011 CGATCCGATCTTAGGCTGGGAATGAACTCTGTATGCTTAGACTGGGAATGACCTTCGTATG-CTA
713 AG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-
* ** * * ** *
20518075 AAGTCAACCCATGAAACGAGCGTGCGGGTACTCAACCGGTCAA-AGGGGCAAGATGCACAAGTTG
776 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CAAGAGGGGCGGGATGCACAAGTCG
** * **
20518139 GGGATCGGTCGGGTCCCCCTCTGCGTGTTGCTAATCCTACTGCCGTAACCCTCGGTC-GGATCTG
840 GGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGG-TCCA
* * *
20518203 ATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
**
20518268 GGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*** * * *
20518333 GTTTAATTACATCTTCATATTTCTGCGTGCCAATGCCGTTTTTATGGCTTGTAAATTCATGCAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20518398 GGTCTCTTAAGCCATCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTT
196 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* *** * *
20518463 TGAAACTTTTTGCGGTTCGGGAGTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACGTGG
261 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACTTGG
* * * *
20518528 CAGACGTGA-CCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTCAAAACTCAAAGTGTA
326 TAGACGTGATCCC-TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
20518592 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
20518657 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGTGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
20518722 GGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATGATGTA-CGCACAGCTCCCCCGGCGC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-AGCGCACA-CCCCCCCGGC-C
* * * * *
20518786 CCCCGATCATAGGAACGC-CAATGCTGCCGGTCAGGTTCTCCGACGACGCTCCGACGATGGTTCC
582 CCCCGATCGTCGGAAC-CTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
** * * * *** *
20518850 CCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGTATGCGCTGTTGCAACCCTCGGT
646 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGT
* * * * * *
20518915 CCGGTCCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACTTGGAATAAACTCCGTATGCCT
711 TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
20518980 AAGTC-ACGCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCATGTCA
776 AAGTCAAC-CCACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAGAGGGGCGGGATGCACAAGTCG
* * * **
20519044 GGGATCGATCGGGTCCCCCTCTACGTGTTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTG
840 GGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCA
* *
20519108 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCAGGCGAGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *
20519169 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGT
66 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
20519234 GTTTAGGGACATCTTCATTTTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
20519299 GGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGGTTTCTATTTTTCATGATTTC
196 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * * *
20519364 TGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTT-TTCTGCAAACTTG
261 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTC-CCAAACTTG
* * * * * *
20519428 GTAGACATGATCCTTTTATATTTTTTTTGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGT
325 GTAGACGTGATCCCTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
20519493 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTAGCAGG
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
20519558 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
20519622 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CGCCCCCCCGGCCCC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGG-CCC
* * ** * * * *
20519685 CCCGGTCGCCGGAACCTCAATGTTGTCGGTCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCC
583 CCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * *
20519750 GACGAAGAATAATGCGGTACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCC
648 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTC
* *
20519815 AGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
713 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
20519880 GTCAACCCATGAAACGAACGCGCGGGCGCTCAG-CTGACCAGAGGGGCGGGATGCACAAGTCGGG
778 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CAAGAGGGGCGGGATGCACAAGTCGGG
* * * * * *
20519944 GATCGGCCGGGTCCCCCTCTACGTGTTGCCAATCCTACTACCACAACCCTCAGTCTGGTCCA
842 GATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCA
* * * * * *
20520006 ATCTTAGACTAGGAATGAACTCCG-ATGCCTAAGTCAACCAAAGAAACAAGCAGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * *
20520070 GGTGGGCACTACGCCGACCAGAGTGACGGGATGCGCATGCCGTGGATCGATAGGTTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20520135 GCTTAGGCACAT-TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
20520199 GGAC-CGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCAATTTTTCACGATTT
196 GGTCTC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
20520263 TTGAAACATTTTT-CGGTT-GAG-TTTTTTAAAATTTTTTCAAAAGGAGTTTT-GTCCCCAAACT
260 TTGAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGT-CCCAAACT
* * * *
20520324 TGGTAGACGTGATTCCTGTATTTTTTTTGGTATGCACAAAAAAATTCAG-TCAAAAACTCGAATT
323 TGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGT
*
20520388 GTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20520453 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATAAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
***
20520518 GGGGGCCAATATAAGGGCCAAGTACCAGCAGAAATCGCACATCATGAGCGCACA------C--CC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGGCC
* * * * *
20520575 CCCCAATCGTCGAAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
582 CCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
20520640 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGTCCAACATGTGCTACCATAAACCTCTGTT
647 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTT
* *
20520705 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTA
712 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
20520770 AGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAA-AGGGGCGGGATGCACAAGTCGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CAAGAGGGGCGGGATGCACAAGTCGG
** ** ** * *
20520834 GGATCAATCGGGTCCCCCTCTGCGTACTATCGATCCTACTACCGCAACCCTTGGTCTGGTCCA
841 GGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCA
*
20520897 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-GGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * *
20520961 GGCGGACACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
20521026 GTTTAGGCACATCTTCATATTTATGCATTCCGATGCCATTTTTATGCCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
20521091 GGTCCCTTAAGCCTTCACGTTAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
196 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
20521156 TGAAACTTTTTACGGCTCGGGATTTTTTAAAATTTTTTCAAAAGTAGTTTTGGTCCCAAACCTGG
261 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACTTGG
* *
20521221 TAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTTGAAGTGTAC
326 TAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
20521286 AAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTAAGATACTTTAATGGCGACTGGCAACAA
391 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
20521350 ACCTGTAAAATTTCAAATGCTCTTTAAGGGGATG-GAGTTCTTGAGGTTTGACGAGGGATATGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
20521414 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGGCCCCCC
521 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGGCCCCCC
* *
20521479 GATCGTCGGAACCTCAATGTCGCCGGTCAGGTTCTCC-AGTGATGCTCCGACGATGGTGCCCCGA
586 GATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGA
* * ** * **
20521543 TGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATTGTAAACCTCTATTCAG
650 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTCAG
* * * *
20521608 TCTGATCTTAGACTGGGAAAGAACTCCGTCTGCTTAGACTGGGAATGAA-TCCCATATGCCTAAG
715 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CCGTATGCCTAAG
* * ** *
20521672 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAG-AAGAGGGGCAGGATGTGCAAGCCGGGGA
779 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAGAGGGGCGGGATGCACAAGTCGGGGA
** * *
20521736 TCGGTCGGGTCCCCCTCTGCGTACTACCGATCCTACTGCCGCAACCCTCGGTCTGATCCA
844 TCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCA
* *
20521796 ATCTTAGACTGGGACTGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GGCGG
* ** ** *
20521861 GCGGGCGGGCACTACGTCAACCAGAGAGACATGATGCGCAAGCCGTGGAGT-AATAGGGTGGTAG
63 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAG
* *
20521925 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATG
127 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
20521990 CAATGGTCTCTTAAGCCATCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
192 CAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
20522055 TTTTTGAAACTTTTTACAGCTCGGGATTTTCTAAAATTTTTTCAAAAGGAGTTCTGGTCCCAAAC
257 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAAC
* *
20522120 CTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
322 TTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
20522185 GTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTAAAATACTTTAATGGCGACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
20522249 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-GAGTTCTCGAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
20522313 GGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCATATCATGAGTGCACACCCCCCCGGCC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGG-C
* *
20522378 CCCCCGATCATCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
581 CCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * *
20522443 CCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCCACCGTAA
646 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA
20522500 ATATCTGTCC
Statistics
Matches: 3817, Mismatches: 421, Indels: 117
0.88 0.10 0.03
Matches are distributed among these distances:
891 381 0.10
892 217 0.06
893 76 0.02
894 113 0.03
895 3 0.00
896 1 0.00
897 152 0.04
898 433 0.11
899 136 0.04
900 328 0.09
901 406 0.11
902 133 0.03
903 531 0.14
904 122 0.03
905 316 0.08
906 469 0.12
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACTTGG
TAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGGCCCCCC
GATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTTCAGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAGAGGGGCGGGATGCACAAGTCGGGGATC
GGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCA
Found at i:20524638 original size:862 final size:866
Alignment explanation
Indices: 20522691--20526428 Score: 4344
Period size: 862 Copynumber: 4.3 Consensus size: 866
20522681 ATTCCATATG
* * *
20522691 CTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * ** * * *
20522755 CCGACCAGAAAGGCAGGATGCGCCTGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
65 CCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
20522820 CTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTACGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATCGGGAATGAACTCTGTATGCCTAAGCCA
* * * * *
20522885 AC---CGATGAAACGA---GCGGGCCGACGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
195 ACTGACGAAGAAGCGATGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* ** * * * *
20522944 TCGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCTT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
20523009 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGG---C-T-A-CCTT--C-TGAAG-TTCATGGCAAGACG
* ** * *
20523074 ACTCGTTTTCTATTTTTCACGATTTTTAAAAGTTTTTACGATTCGGGATTTTTTAAAATTTTTTC
380 ACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* ** *
20523139 GAAAGGAGTTTTTGTACCAAACTTGGTAGACGTGATCCTTTTATTTTT-TTGGCATGCA-AAAAA
445 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
20523202 ATATTCAGCTAAAAACTTGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
510 A-ATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
20523267 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
574 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20523332 TTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
639 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * * * *
20523397 CATGTGCGTACACCCCCC-AGCCTCTCGATCGCCAGAACCCTAAGGACGTTGGTCAGGTTCTCCG
704 CATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * ** *
20523461 GCTATGCTCCGACGATGGTGCCTTGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCACC
769 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGC
* * * *
20523526 ATGTGCTGCTGCAACCCTCGGTCCGG-TCCGAT
834 ATGTGCTGCCGCAACCCTCAGTCTGGTTCAGAT
* *
20523558 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20523623 C-AGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGTGTCCCCTTCTGTGTGCTATCGATC
66 CGA-CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* * *
20523687 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATCGGGAATGAACTCTGTATGCCTAAGCCA
* * * *
20523752 ACTGACGAA-ACGAGCGGGTGGGTGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGC
195 ACTGACGAAGA--AGC-GATGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
20523816 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
20523881 CATTTTTATGGCTTGTAAATTCATACAATGG-T-CCTT-T-AAG-TCATGGCAAGACGACCCGTT
322 CATTTTTATGGCTTGTAAATTCATACAATGGCTACCTTCTGAAGTTCATGGCAAGACGACTCGTT
* * *
20523941 TTCTATTTTTCATGATTTTTGAAA-ATTTTCCGGTTCGGGACTTTTTAAAATTTTTTCGAAAGGA
387 TTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* *
20524005 GTTTTAGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
452 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20524070 CTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTT
517 CTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * * *
20524135 TAATTGCTACTGGGAGTAAACCTATAAAATCTCAAAGGCTCTTTAAGGGGGTATGAGTTCTCAAG
582 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* *
20524200 GTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGTG
647 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
20524265 CACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAACGCTGCCGGTCAGGTTCTCCGACGATGC
712 CACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
** * * *
20524330 TCCGGTGATGGTGCCCCGGTGAAGAGAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCT
776 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
* *
20524395 GCCGTAACCCTCAGTTTGGTTC-GAT
841 GCCGCAACCCTCAGTCTGGTTCAGAT
* * *
20524420 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCCGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
20524485 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
20524550 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGA-CGAGGAATGAACT-TCGTATGCCTAAGCC
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATCG-GGAATGAACTCT-GTATGCCTAAGCC
* *
20524613 AACTGACGAAAGAAGCGGATGGGTGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
194 AACTGACG-AAGAAGC-GATGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
20524678 AAGCCGTGGATCGATAGGATGGTAGGTGGGTTTCGGCTCATCTTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** * *
20524743 CATTTTTATCACTTGTAAATTCATACAATGGTCCCCTAAGCCATCATGTGATGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGG----CT-A-CC-T--TCTGAAG-TTCATGGCAAG
* * * * * * *
20524808 ATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAACTTTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
20524873 TT-TAGAAGGCGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
442 TTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
20524937 AAAAAATTAAGCTAAAAACTCGATCTGTACAAGATTTTGTGACAATTTGAAAAGAGCGTCCCCAT
506 AAAAAATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
20525002 TTCGGACACTTTATTGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
571 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
20525067 GAGTTCTTGAGGTTCGATGCGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
636 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
20525132 CATCATGTGCGCACACCCCCCCGACCCCCTCGATCGTTGGAACCCAAATGCCGTCGGTCAGG---
701 CATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* *
20525194 T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
765 TCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCC
* * *
20525251 CAGCAAGTGCTGTCGCAACCCTCGGCCCCACCGAATCCTAGACTGGGAATGAACTCCATAT
830 CAGCATGTGCTGCCGCAACCCT------CA--G-----T---CT-GG--T----T-CAGAT
* * * ** *
20525312 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCCTGGAACGAGTTTACGGGCGCT-AG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
20525376 CCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* *
20525441 CTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGA-CTGGGAATGAACTCTGTATGCCTAAGCC
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATC-GGGAATGAACTCTGTATGCCTAAGCC
* * * * *
20525505 AACCGAC-AA-AA-CGAGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGGTGCGCA
194 AACTGACGAAGAAGCGA-TGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20525567 AGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCA
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20525632 ATTTTTAT-GCTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 ATTTTTATGGC-TTGTAAATTCATACAATGG---C-T-A-CCTT--C-TGAAG-TTCATGGCAAG
* * * * * *
20525696 ACAACTCGTTCTCTATTTTTCACGATTTTTGAAATATTTTGTGGTTTGGGATTTTTTATAATTTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
20525761 TTGGGAAGGATTTTTGGTCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
442 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
**
20525825 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
507 AAAAATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20525890 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTG
572 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * *
20525955 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCCCAC
637 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
20526020 ATCATGTGCGCACACCCCCCGAACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
702 ATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *
20526085 CGACGATGCTCCGACGATGGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCCCA
767 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
*
20526150 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATAT
832 GCATGTGCTGCCGCAACCCTCAGTCT-G---G---TT---C-----A-G--------AT
* * * * *
20526209 GCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAGTGTCCGGGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * * *
20526274 CTGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGTTGCCGATC
65 CCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* ** * * *
20526339 CTGCTGCTACAACCCTCGGTCTGGTCTGATCTTAGAATC-TGAATGAACTCCGTATGCCTAAGCC
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG-ATCGGGAATGAACTCTGTATGCCTAAGCC
20526403 AACTGACG-A-AA-CGAATGGGCGGGCGG
194 AACTGACGAAGAAGCG-ATGGGCGGGCGG
20526429 CTGGCAAGCG
Statistics
Matches: 2479, Mismatches: 283, Indels: 187
0.84 0.10 0.06
Matches are distributed among these distances:
859 72 0.03
860 243 0.10
861 13 0.01
862 428 0.17
863 5 0.00
864 1 0.00
866 1 0.00
867 245 0.10
868 2 0.00
869 1 0.00
870 6 0.00
871 3 0.00
872 1 0.00
873 3 0.00
874 1 0.00
875 128 0.05
877 42 0.02
878 311 0.13
880 1 0.00
881 5 0.00
883 2 0.00
884 4 0.00
885 2 0.00
886 43 0.02
887 203 0.08
888 263 0.11
889 4 0.00
890 3 0.00
891 2 0.00
892 125 0.05
893 56 0.02
896 1 0.00
897 127 0.05
898 129 0.05
899 2 0.00
900 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (866 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATCGGGAATGAACTCTGTATGCCTAAGCCAA
CTGACGAAGAAGCGATGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGCTACCTTCTGAAGTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
AACCCTCAGTCTGGTTCAGAT
Found at i:20525822 original size:888 final size:891
Alignment explanation
Indices: 20524420--20526416 Score: 2872
Period size: 888 Copynumber: 2.2 Consensus size: 891
20524410 TTGGTTCGAT
* *
20524420 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCCGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTATCCGGGCGCTCAGC
* * *
20524485 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
20524550 TGCTGCCGCAACCCTC-AGTCTGGTCTGATCTTAGAC-GAGGAATGAACT-TCGTATGCCTAAGC
131 TGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTG-GGAATGAACTCT-GTATGCCTAAGC
* **
20524612 CAACTGACGAAAGAAGCG-GATGGGTGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
193 CAACTGAC--AA-AA-CGAGACGGGCAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
20524676 GCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTCGGCTCATCTTCATATTTCTGCATGCCAAT
254 GCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
20524741 GCCATTTTTATCACTTGTAAATTCATACAATGGTCCCCTAAGCCATCATGTGATGTTTCATGGCA
319 GCAATTTTTATCACTTGTAAATTCATACAATGGTCCCCTAAGCCATCACGTGAAGTTTCATGGCA
** * *
20524806 AGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAACTT
384 AGACAACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAACTT
* * *
20524871 TTTTTAGAAGGCGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
449 TTTTGAGAAGGAGTTTTGGCCCAAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
20524936 AAAAAAATTAAGCTAAAAACTCGATCTGTACAAGATTTTGTGACAATTTGAAAAGAGCGTCCCCA
514 -AAAAAATTAAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAAAAAAGCGTCCCCA
* * *
20525001 TTTCGGACACTTTATTGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20525066 TGAGTTCTTGAGGTTCGATGCGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
643 TGAGTTCTTGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCC
*
20525131 ACATCATGTGCGCACACCCCCCCG-ACCCCCTCGATCGTTGGAACCCAAATGCCGTCGGTCAGG-
708 ACATCATGTGCGCACA-CCCCCCGAACCCCC-CGATCGTCGGAACCCAAATGCCGTCGGTCAGGT
** * * *
20525194 T-T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAA
771 TCTGCTCCGACGATGGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCAA
*
20525257 GTGCTGTCGCAACCCTCGG-CCCCACCGAATCCTAGACTGGGAATGAACTCCATATG
836 GTGCTGCCGCAACCCTCGGTCCCCACCG-ATCCTAGACTGGGAATGAACTCCATATG
* * * * *
20525313 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCCTGGAACGAGTTTACGGGCGCT-AGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTATCCGGGCGCTCAGC
* *
20525377 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
20525442 TGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
20525507 CCGACAAAACGAG-CGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGGTGCGCAAGCC
196 CTGACAAAACGAGACGGGCAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20525571 GTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTT
261 GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTT
* * *
20525636 TTATGC-TTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
326 TTAT-CACTTGTAAATTCATACAATGGTCCCCTAAGCCATCACGTGAAGTTTCATGGCAAGACAA
*
20525700 CTCGTTCTCTATTTTTCACGATTTTTGAAA-TATTTTGTGGTTTGGGATTTTTTATAA-TTTTTT
390 CTCATTCTCTATTTTTCACGATTTTTGAAACT-TTTTGTGGTTTGGGATTTTTTA-AACTTTTTT
* *
20525763 GGGAAGGATTTTTGGTCCC-AAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 GAGAAGGAGTTTTGG-CCCAAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
20525827 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTAAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAAAAAAGCGTCCCCATTTC
*
20525892 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20525957 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCCCACAT
647 TTCTTGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACAT
*
20526022 CATGTGCGCACACCCCCCGAACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCCGAACCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGG-T-T---
20526087 ACGATGCTCCGACGATGGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCCCAGC
772 -C--TGCTCCGACGATGGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCCCAGC
* **** * *
20526152 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
834 AAGTGCTGCCGCAACCCTCGGTCCCCACCGATCCTAGACTGGGAATGAACTCCATATG
* * * *
20526210 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAGTGTCCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTATCCGGGCGCTCAGC
* * ** * * *
20526275 TGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * ** *
20526340 TGCTGCTACAACCCTCGGTCTGGTCTGATCTTAGAATCTGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
*
20526405 CTGACGAAACGA
196 CTGACAAAACGA
20526417 ATGGGCGGGC
Statistics
Matches: 982, Mismatches: 100, Indels: 39
0.88 0.09 0.03
Matches are distributed among these distances:
886 37 0.04
887 203 0.21
888 269 0.27
889 10 0.01
890 2 0.00
892 123 0.13
893 57 0.06
896 1 0.00
897 154 0.16
898 126 0.13
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTATCCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
CTGACAAAACGAGACGGGCAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTT
TTATCACTTGTAAATTCATACAATGGTCCCCTAAGCCATCACGTGAAGTTTCATGGCAAGACAAC
TCATTCTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAACTTTTTTGAG
AAGGAGTTTTGGCCCAAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAT
TAAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAAAAAAGCGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
TGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATG
TGCGCACACCCCCCGAACCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTGCTCCGA
CGATGGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGC
AACCCTCGGTCCCCACCGATCCTAGACTGGGAATGAACTCCATATG
Found at i:20526220 original size:26 final size:26
Alignment explanation
Indices: 20526184--20526236 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20526174 CTGGTCTGAT
20526184 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20526210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20526236 C
1 C
20526237 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20526878 original size:26 final size:26
Alignment explanation
Indices: 20526849--20526901 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20526839 CTGATCCGAT
20526849 CTTAGACTGGGAAT-GAACTCCGTATG
1 CTTAGACTGGGAATCG-ACTCCGTATG
* *
20526875 CTTAGATTGGGAATCGACTCTGTATG
1 CTTAGACTGGGAATCGACTCCGTATG
20526901 C
1 C
20526902 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCGACTCCGTATG
Found at i:20527789 original size:26 final size:26
Alignment explanation
Indices: 20527753--20527835 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
20527743 CTGGTCTGAT
20527753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
20527779 CTTAGACTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTATG
*
20527805 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20527831 CTTAG
1 CTTAG
20527836 GTCAACACAC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20528469 original size:921 final size:927
Alignment explanation
Indices: 20526849--20528612 Score: 2668
Period size: 921 Copynumber: 1.9 Consensus size: 927
20526839 CTGATCCGAT
** ** * *
20526849 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATCGACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTACACTTAGACAGGGAATCGACTCCGTATGCCTAAGTCAACAC
* ** *
20526914 ACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGGTCG
66 ACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGCCG
* ** *
20526979 GGTCCCCCTCTATGTGCTACAGATTTTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGG
131 GGTCCCCCTCTACGTGCTACAGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGG
* *
20527044 GAATGAACTCCGTATGCCTAACCCAACCGACGTAATGAGCGGACAGGCCGGTGGGCGGGCATTAC
196 GAATGAACTCCGTATGCCTAACCCAACCGACGTAA-GAGCGGA-AGGCCGGCGGGCGGGCACTAC
* *
20527109 GTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACAT
259 GTCGACCAAAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGCTAGGTGGGTTTAGACACAT
*
20527174 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
324 CTTCATATTTCTATGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
20527239 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTAATGATTTTTGAAACTTTTTA
389 CTTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTTGAAACTTTTTA
* * * *
20527304 CTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACTTGGTAGACATGATCCT
454 CGGTTCGAGATTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAACTTGGTAGACATGATCCT
20527369 TGTATTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
519 TGTATTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
20527434 CATTTGAAAAAAATATCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATAT
584 CATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATAT
* * * * *
20527499 GAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGGGGGATAGGGGGCCAATATAAGG
649 CAAACGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTATTGATGAGGGATAGGGGGCCAATATAAGG
* * *
20527564 GCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCTGGCCCCCTCAATCGTCGGAA
714 GCCAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCC-CAATCGTCGGAA
* **
20527629 CCCCAATGCCGCCGGTCAGGTTCCCCGACGATGCTCCGGTGATGGTGCACC-GATGAAGAAAAAT
778 CCCCAATGCCGCCGGCCAGGTTCCCCGACGATGCTCCGACGATGGTGC-CCTGATGAAGAAAAAT
20527693 ACGGCACCAGCACATGCTCTAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAG
842 ACGGCACCAGCACATGCTCTAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAG
20527758 ACTGGGAATGAACTCCGTATG
907 ACTGGGAATGAACTCCGTATG
* *
20527779 CTTAGACTGGGAATGAACTCCGTACACTTAGACAGGGAAT-GAACTCCGTATGCTTAGGTCAACA
1 CTTAGACTGGGAATGAACTCCGTACACTTAGACAGGGAATCG-ACTCCGTATGCCTAAGTCAACA
* * * * *
20527843 CACGACACGAGCGTGTAGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGTTGGGGATTGGCC
65 CACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGCC
** * * ** * *
20527908 TTGT-CCCCTCTACGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
130 GGGTCCCCCTCTACGTGCTACAGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTG
* * *
20527972 GGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA-A-C-G-A-GCGGGCGGGCGGGCACTACG
195 GGAATGAACTCCGTATGCCTAACCCAACCGACGTAAGAGCGGAAGGCCGGCGGGCGGGCACTACG
* * *
20528031 TCGAGCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGCTAGGTGGGTTTAGGCACATC
260 TCGACCAAAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGCTAGGTGGGTTTAGACACATC
* *
20528096 TTCATTTTTCTGTGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
325 TTCATATTTCTATGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* **
20528161 TTCACGTCAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCGTGATTTTTGAAACTTTTTAC
390 TTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTTGAAACTTTTTAC
*
20528226 GGTTCGAGATTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
455 GGTTCGAGATTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCC-AACTTGGTAGACATGATCCT
* * *
20528291 TGTATT-TTTATTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACTAGATTTTGTGA
519 TGTATTCTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
20528355 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATT
583 CCATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATA
*
20528420 TCAAACGCTCTTTAAGGGGCTGTGAGTTCTCGAGG-ATTGGTGAGGGATAGGGGGCCAATATAAG
648 TCAAACGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTATTGATGAGGGATAGGGGGCCAATATAAG
* * *
20528484 GGCCAAGTGCCAACACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAA
713 GGCCAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCAATCGTCGGAA
* * *
20528549 CCCCAATGCCGTCGGCCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAAT
778 CCCCAATGCCGCCGGCCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCTGATGAAGAAAAAT
20528613 GTGGGAATGA
Statistics
Matches: 750, Mismatches: 80, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
919 2 0.00
920 66 0.09
921 315 0.42
922 168 0.22
924 1 0.00
925 1 0.00
926 1 0.00
928 2 0.00
929 82 0.11
930 112 0.15
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (927 bp):
CTTAGACTGGGAATGAACTCCGTACACTTAGACAGGGAATCGACTCCGTATGCCTAAGTCAACAC
ACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGCCG
GGTCCCCCTCTACGTGCTACAGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAACCCAACCGACGTAAGAGCGGAAGGCCGGCGGGCGGGCACTACGT
CGACCAAAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGCTAGGTGGGTTTAGACACATCT
TCATATTTCTATGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAACTTGGTAGACATGATCCTTG
TATTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATATCA
AACGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTATTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCAATCGTCGGAACCC
CAATGCCGCCGGCCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATACGG
CACCAGCACATGCTCTAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:20529233 original size:26 final size:26
Alignment explanation
Indices: 20529197--20529249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20529187 CCCCACCGAT
*
20529197 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20529223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20529249 C
1 C
20529250 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20531893 original size:26 final size:26
Alignment explanation
Indices: 20531864--20531916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20531854 CTGATCCGAT
*
20531864 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAAAGAACTCCGCATG
*
20531890 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGCATG
20531916 C
1 C
20531917 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGCATG
Found at i:20532798 original size:26 final size:26
Alignment explanation
Indices: 20532762--20532814 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20532752 CTGGTCTGAT
20532762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20532788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20532814 C
1 C
20532815 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20532950 original size:898 final size:897
Alignment explanation
Indices: 20529192--20536356 Score: 9036
Period size: 894 Copynumber: 8.0 Consensus size: 897
20529182 CCCGACCCCA
*
20529192 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * *
20529257 AACCTACGAAACAAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGAATC
66 AACCCACGAAACGAGCGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * *
20529322 GGTCATGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAG-CTCGGTCTGATCTTA
131 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTC-CGGTCTGATCTTA
* * * * *
20529386 GACTGAGAATGAACTCTGTAAGCCTAAGCCAACCGACGAAACGAGTGGACGGGTGGGCAGGTGGG
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGC----GGG
* * * *
20529451 CACTA-GTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTAGGTTTAG
256 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
20529515 GCACATCTTCAAATTTCTGTGTGCCAATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCC
321 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * **
20529580 TTAAGCTTTAATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGA-TTTCAAAAC
386 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
20529644 -TTTTGCGGTTC-AGGATTTTTTGAAATTTTTTTGAAAGGAGGTTTGGCCCCAAACTTGGTAGAC
451 TTTTTGCGGTTCGA-GATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
20529707 GTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAGAAAA-TCGAAGTGTACAAGA
515 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGA
*
20529771 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTACTGGCAGCAAA
579 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG---CTACTGGCAGCAAA
*
20529836 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
641 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** * * * *
20529901 GCAATATAAAGGTGAACTGCCAGCACCGATCGCACATCATGTGCGCAGA--CCC---CCCCCCGA
706 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGA
* * * * * * *
20529961 TCGCTGGAACCTCAATACCGCCGCTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA-GA
771 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTG-CGATGGTGCCCCGACGA
* * * * * * *
20530025 AGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATCTACTACCGCAACCCTCGGTCTGGT
835 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* * *
20530088 CCAATCTTAGACTGGGTATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** *
20530153 AACCCATGTAACGGGCGTGCGCGCGC-ACAG-TCGGCCAGAGGGGCGGGATAAGCAAGTCGGGGA
66 AACCCACGAAACGAGCGTGCGGGCGCTA-AGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * *
20530216 TCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCAGATCAGATCTT
129 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTT
* * * *
20530281 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----GCAGGCGGGCGTGCAC
194 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCAC
* * *
20530342 TACACTGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
259 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20530407 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTA
324 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
20530472 AGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGAAACCTT
389 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * * * *
20530537 TTATGGTTCGGGATTTTTTTTAAATTTTTTTGGAAGGAGTTTTTGCCCCAAACTAGGTAGATGTG
454 TTGCGGTTCGAGA-TTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
20530602 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAATGTACAAGATTTT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* ** * * *
20530667 GTAATGATTTGAAAAAGGTGTCCCCATTTCAGATACTTTAATAGCTACTACTGGCAGCAAACCTG
583 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-G--GCTACTGGCAGCAAACCTG
* *
20530732 TAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAA
645 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
20530797 TATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGATCA
710 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCGATCG
* ** *
20530862 CCGGAACCCCAATGCCACAAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGATGAAGA
774 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTG-CGATGGTGCCCCGACGAAGA
* *
20530927 AAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTACCGA-AA-CC-C--T-T-G-
838 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-ACAACCCTCGGTCTGGT
* *
20530980 --G-TC-----C---G---G---TCCG-AT-CTTAGACGGGGAATGAACTCCGTATGCCTAAATC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * **
20531026 AACTCACGAAATGAGCGTACGGGAGCTCAA-CCGGCCAGA-GGGCGGGATGCGCAATTCGGGGAT
66 AACCCACGAAACGAGCGTGCGGGCGCT-AAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
20531089 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGGTTTGATCTTA
130 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTA
* * *
20531154 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACT
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACT
* * * * * * *
20531219 ATGCCGACCAGAGGGACTGGATGCGCAAGTCGTGGTTCGATAGGGTGGTAGGTGGCTTTAGGCAC
260 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
20531284 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
325 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
20531349 GCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCACGATTTTAGAAACTTTT
390 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
20531414 TGTGATTC-AG-TATTTTTTAAA-ATTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
455 TGCGGTTCGAGAT-TTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
20531476 TCCTTTTATTTTTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
519 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
20531541 TGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * ** * *
20531606 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGTGGTTTGATGATTGATAGGGGGCAAAAATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * ** * *
20531671 AGGGCCATGTACCAGCACTCATCGTACATCATGTGCTAACACCCCACCCGGCCCCCCCGATCACC
714 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCTGG-CCCCCCGATCGCC
* * * ** * *
20531736 GGAACCCTAATACTGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
776 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTG-CGATGGTGCCCCGACGAAGAAA
* * * * * *
20531801 AATGCGGCACCAGCACATGCCAGAGCCTAGAATGTGCTGCCGCAACCCTCGATCTGAT
840 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* *
20531859 CCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
20531924 AA-CCATCGAAACGAACGTGCGGGCGCTCAGCTGGCCAAAGGGGCAGGATGCGTAAGCCGAGGCT
66 AACCCA-CGAAACGAGCGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
20531988 AGGCCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTA
130 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTA
** * * * *
20532053 GACTGGGAATGAACTTTGTATGCCTAAGCCAATCGACAAAACGAGTGGGCAGGCGGGAGGGCACT
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACT
**
20532118 ACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
260 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20532183 ATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
325 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
20532248 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATATTTCACGATTTCTGAAAACTTT
390 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTT
* *
20532313 TTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
454 TTGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
20532378 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
519 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
20532443 TGACCATTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
20532507 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
20532572 AGGGCCAAGTACCAGCGCCCATCACACATCATGTGCGCACACCCCCTGGCCCTCCGATCGCCGGA
714 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCGGA
* * * *
20532637 ACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTCTGGCGATGGTACCTCAACGAAGAAAAAT
779 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT-GCGATGGTGCCCCGACGAAGAAAAAT
*
20532702 GCGGCACCAGCACAGGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
843 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
*
20532757 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
20532822 AACCAACGAAACGAGCGTGCAGGCGCTAAGCTTGCCAGAGGGGCGGGATGCACAAGCCAGGGATC
66 AACCCACGAAACGAGCGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * *
20532887 GGCCGGGTCCCCTTCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGGTGC-GATCTTA
131 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGT-CTGATCTTA
* * * * *
20532951 GATTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACTAGCTGGCAGGCGGGCGGGCGGG
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-T-G--GGCGGGCGGGCGGG
* * * *
20533016 CTCTACGCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAG
256 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * *
20533081 GCACATCTTCATATTTCTATGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
321 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
20533146 TTAAGCCTACACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
386 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
20533211 TTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCGAAACTTGGTAGACA
451 TTTTTGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * * * *
20533276 TGATCCTCGTATTTTTTTTTTGCATGCACAAAGAAATTCAACTAAAAAATTGAAGTGTACAAGAT
516 TGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
20533341 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
580 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
20533406 TAAAATCTCAAATGCTCATTAAGGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
645 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
20533471 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCTCCCGGCCCCCTCGATC
710 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCTGGCCCCC-CGATC
* * *
20533536 ACCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA-------CGATGGTGCCCCGGCGAACA
773 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGCGATGGTGCCCCGACGAAGA
* * * *
20533591 AAAATGTGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
838 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* * *
20533651 CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
20533716 AACCCACGAAACGAGCGTACGGGTGCTCAA-CTGACCAGAGGGGCGAGATGCGCAAGCCGGGGAT
66 AACCCACGAAACGAGCGTGCGGGCGCT-AAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** * * * *
20533780 CGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTGCTGCAACATTCGGTCTGATCTGATCTAA
130 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTA
* * * *
20533845 GATTGTGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGACGGGCGGG
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC--G-GG-CGGGCGGG
* * * *
20533910 CACTACGCCTGCCAGAGAGATGGGATGCGCAAGGCATGGATCGATAGGGTGGTAGGTGGGTTTAG
256 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
20533975 GCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
321 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
20534040 TTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCCTTTTTCTATTTTTCATGATTTTTGAAA
386 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCACGATTTTTGAAA
** * * ** * ** *
20534105 CTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCAACAAACTTGGTAGAA
450 CTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
20534170 GTGATCCTTGTTTTTTTTTTTGGCA--CACATAAAAAATTTCAGCTAAAAACTCGAAGTGTACAA
515 GTGATCCTTG-TATTTTTGTTGGCATGCACA-AAAAAA-TTCAGCTAAAAACTCGAAGTGTACAA
* * *
20534233 GATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTACTGGAAGCAAA
577 GATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
20534298 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCT-GAAGGTTTGATGAGGGATAGGGG
641 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGG
* * *
20534362 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACA-ACCCTCGGCCCCCC
705 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT-GGCCCCCC
* * * * * *
20534426 GATCGTCAGAACCCTAATGCCACCGGTCAAGTTCTCCGGCGA-----T--GA---TGCCCCGACA
769 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGCGATGGTGCCCCGACG
* * *
20534481 AAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGT
834 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* * ** ** *
20534545 CTGATCTTAGACTAGGAATGAACTCTATATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTT
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
20534610 AACCCACGAAACGAGCATGCGGGGGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATC
66 AACCCACGAAACGAGCGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * ** ** * * *
20534675 GGTCGGGTCCCCCTCTGCATTTTGGTGATCCTACTGCCGTAACCCAT-GGTCCAGTCTGATCTTA
131 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCC-TCAGTCCGGTCTGATCTTA
* * * * * *
20534739 GATTGGGATTGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGACGGGCGAG
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC--G-GG-CGGGCGGG
*** * *
20534804 CACTACATTGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGCAGGTGGGTTTAG
256 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
20534869 GTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
321 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** *
20534934 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAT
386 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
20534999 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
451 TTTTTGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
20535064 TGATCCTTGT-TTTTTGTTGGCAAGCAGAAAAACATTCAGCTAAAAACACGAAGTGTACAAGATT
516 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
20535128 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAACAAACTTGT
581 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20535193 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * * *
20535258 ATAAGTGCCAAGCACAAACACCCATCGCACATCATGTGTGCACACCCCCCCCGACCCCACCGATC
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCTGGCCCC-CCGATC
* * * * * * * * * * **
20535323 GCTGCAACTCCAATGTCGCCAGTCAGGTTCTCCGGCAATGCTCCGGTGCTGGTGCCCAGGTGAAG
773 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-CTGCGATGGTGCCCCGACGAAG
* * * **
20535388 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAATCCT-GT
837 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT-CTGGT
* * * * * * *
20535449 TCGATCTTAGACTGGGAATGAACTCTGGATGCTTATATTGCGAATGAACTCCTTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
20535514 AACCCACGAAATGAGTGTGCAGGCGCTCAG-TCGGCTAGAGGGGCAGGATGCGCAAGCCAGGGAT
66 AACCCACGAAACGAGCGTGCGGGCGCTAAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * *
20535578 CGATCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTCGGTCCAGTCTGATCTTA
130 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTA
* * * *
20535643 GACTGGGAATGAACTCTGTATACCTAAGCCAACCGACGAAACAAGT----GGGTGGGCGGGCACT
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACT
* *
20535704 ACGCCGGCCAGAGAGACGGGATACGCAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
260 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20535769 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
325 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
20535834 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTT
390 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** * *
20535899 TGCGGTTCGGGATTTTTTTAAAACTTTTTGGAAGG-TTTTTGGACCCAAACTTGGTAGACGTGAT
455 TGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
20535963 CCTTGTATTTTTTTTGGCATGCA-AAAACAAATTCAACTAAAAAATCAAAGTGTACAAGATTTTG
520 CCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
20536027 TGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGCAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20536092 ATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
20536157 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGGTGGCCCCCCCGATCGCCG
714 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CTGG-CCCCCCGATCGCCG
* *
20536222 GAACCCCAATGCCGTCGGTCAGGTTCT-C--C---G---T-CGATGGTGCCCCGACGAAAAAAAA
777 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGCGATGGTGCCCCGACGAAGAAAAA
* *
20536277 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTTTGGT
842 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
*
20536333 CTGATCTTAGACTGGGAATGAACT
1 CCGATCTTAGACTGGGAATGAACT
20536357 TCGCATGCCT
Statistics
Matches: 5463, Mismatches: 686, Indels: 252
0.85 0.11 0.04
Matches are distributed among these distances:
870 118 0.02
871 4 0.00
872 224 0.04
873 189 0.03
874 13 0.00
875 6 0.00
876 197 0.04
877 1 0.00
878 1 0.00
881 2 0.00
882 2 0.00
883 1 0.00
884 90 0.02
887 1 0.00
888 7 0.00
889 165 0.03
890 157 0.03
891 69 0.01
892 276 0.05
893 141 0.03
894 913 0.17
895 226 0.04
896 793 0.15
897 14 0.00
898 436 0.08
899 349 0.06
900 17 0.00
901 220 0.04
902 375 0.07
903 149 0.03
904 272 0.05
905 35 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTAAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
GCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGCGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
Found at i:20533685 original size:26 final size:26
Alignment explanation
Indices: 20533656--20533708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20533646 CTGGTCCGAT
*
20533656 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20533682 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20533708 C
1 C
20533709 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20534601 original size:26 final size:26
Alignment explanation
Indices: 20534550--20534602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20534540 CCGGTCTGAT
*
20534550 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20534576 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20534602 C
1 C
20534603 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20537286 original size:4 final size:4
Alignment explanation
Indices: 20537277--20537304 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
20537267 AAAAATGAGT
20537277 GGGC GGGC GGGC GGGC GGGC GGGC GGGC
1 GGGC GGGC GGGC GGGC GGGC GGGC GGGC
20537305 ACTACGCCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.75, T:0.00
Consensus pattern (4 bp):
GGGC
Found at i:20540617 original size:26 final size:26
Alignment explanation
Indices: 20540588--20540640 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20540578 CCGGTCCAAT
20540588 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20540614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20540640 C
1 C
20540641 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20541451 original size:898 final size:894
Alignment explanation
Indices: 20536309--20544337 Score: 8946
Period size: 897 Copynumber: 9.1 Consensus size: 894
20536299 GCCCAGCATG
* * ** * * ** *
20536309 TGCTGCCACAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGCGAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * * * *
20536374 CCGACGAAACGAGCAGACGAGTGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGTGTAA
66 CCGACGAAACGAGC-G--G-GCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* * **
20536439 GTCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
20536504 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATT-ACGTGAAGTTTCATGGCAAGA
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGA
* * * *
20536568 CGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
20536633 TTGGAAGGCA-TTTTGGCCCC-AACGTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACA
321 TCGGAAGG-AGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
20536696 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT-CCCAT
384 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCAT
* *
20536760 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGT
449 TTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
20536825 GAGTTATTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTGCCAGCACCCATCGCA
513 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** *
20536890 CATCATGTGCGCACACCCCGTTGGCCCTACCGATCGTCGGAACCCCAATGCCGCCGGTCAGG---
578 CATCATGTGCGCACACCCC-CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
20536952 ---T----T-CTCCGACGATGCT--CCGGCGATGAAAAATGCGGCACCAGTACATGCCTGAGCCC
641 TCCTGCGATGCTCCGACGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * ** ** *
20537007 AACATGTGCTGCTGCAACCCTCATTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTA
706 AGCATGTGCTACCGTAACCCTC-GTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTA
* * * * *
20537072 GACTGGGAATGAACTCTGTACGCCTAAGTCAACCCATGAAACGAGCCTGCAGGCGCTCAGCCGGC
769 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* ** * * ** *
20537137 CAGAGGGGCATGATGCCCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
834 CAGAGAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
20537198 TACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
** ** * * *
20537263 CTAAAAAAATGAGTGGGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
66 C-CGACGAA--A---------CGAGCGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGG
* * * **
20537328 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTCTAGGCACATCTTCAAATTT-TGGCGTG
119 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATGTG
* * * * *
20537392 CCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGACTCTTTAGCCTTCACATGAAGTTTCA
183 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * * *
20537457 TGGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTCAAAACTTTTTACTGTTCGTGATTTTTTA
248 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* *** *
20537522 AAATTTTTTCGGAAGGAGTTTCGAAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
313 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
* * * *
20537587 TACA-AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGT
378 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGT
* * * * * *
20537651 CCCCATTTCAGATATTTTAATGCCTAATAACAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
443 CCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
20537716 GGGTGTGAGTGCTCGAGGTTTGATGACGGATAGGGGGCAAATATATGGGCCAAGTACCAGCACCC
507 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
20537781 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
572 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
** * * * * * *
20537846 GTTCTCCCCCGATGCTCTGACGACGATGCCCTGACGAAGAAAAATGCGACACCAGCACATGCTCG
637 GTTCTCCTGCGATGCTCCGACGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
20537911 AGCCCATCATGTGCTGCCGCAA-CC-C-T-C-G----ATC-----C--G---G-A--CCG-A-GC
701 AGCCCAGCATGTGCTACCGTAACCCTCGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGC
* * * *
20537952 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTTAGCC
766 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * *
20538017 GGCCAGA-AGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGCGCTGTTGATCC
831 GGCCAGAGA-GGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** * * *
20538081 TACTACTGCAACCCTCGATTTGGTCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
20538146 CCGACAAAATGAGCGGCCAAGTGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGG----GCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
** * ** *** **
20538211 GTTGTGGATCGATAGGGTGGTAGGTGAGTTTACTCACATCTTCATATTTCTGCATGCCAATGCTG
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* *
20538276 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
20538341 GACTCGTTTTCTATTTTTCTTGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
20538406 CGGAAGGAGTTTTGGCCCGAAACGTT-TTTGACAG-GATCCTTGTATTTTTGTTGGCATGCACAA
322 CGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGAC-GTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * **
20538469 CAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATT
* * *
20538534 TAAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCATATGCTCATTAAGGGGGTGTG
450 TCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20538599 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
514 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
20538664 ATCATGTGCGCACACCCACCGGGCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
579 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
20538729 -GACGATGCTCTGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCA
644 TG-CGATGCTCCGACGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** ** *
20538793 GCATGTGCTGCTGTAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
707 GCATGTGCTACCGTAACCCTCG-TCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAG
* *
20538858 ACTGGGAATGAACTCCGT-TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCC
770 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * ** * *
20538922 AGAGGGGTGGGATGCGTAAACCGGGGATCGATCGGGTCCCCCTCAACGTGCTATTGATCC
835 AGAGAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
20538982 TGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * ** * * * * *
20539047 CTGAGGAAACGAGCGAGCGGGC--G--GGCACTATGTAGGGTAGAGTGACAGGATGCGTAAGCCA
66 CCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
* * *****
20539108 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTACGTGCCAATGCCGCCGG
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* * *
20539173 TCTAGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
20539237 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTAGGGATTTTTTAAATTTTTTTTGGG
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA-ATTTTTTCGG
* * *
20539302 AA-GAGTTTTGGCCTCAAACTTGGTAGACGGGATCCTTGT-TTTTGTGTTGGCATGCACAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTTGGCATGCACAAAAAA
** ** *
20539365 ATTCAGAGAAAAACTTTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20539430 ACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
20539495 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
20539560 TGTGCGCACAACCCCCCCGGCCCCCCCGATCG-CTGAAACCCTAACGCCACCGGTCAGGTTCTCC
583 TGTGCGCAC-A-CCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * *
20539624 -GACG-T--T--G--G-T-G-CCCCAACGAAGAAAAATACGGCACAAGCACATGCCCGAGCCCAG
644 TG-CGATGCTCCGACGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** *
20539678 CATGTGCTGTCGCAA-CC-C-T-CGG-----TC-----C--G-AT---CT--G-AT-CTTAGACT
708 CATGTGCTACCGTAACCCTCGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACT
* * *
20539719 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCTGGCGTTCAGCCGGCCAGA
773 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * *
20539784 CGA-GCAGGATGCGCAAGCC-GACGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
838 -GAGGCGGGATACGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
20539841 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGA-TAGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCATATGCCTAAGCCA
* *
20539905 ACCGACAAAAAGAGCGGGCAGGCGGGCGGGCAGGCACTACGCC-GCTCAGAGAGACGGGATGCGC
65 ACCGACGAAACGAGC--G--GGCGGGCGGGCAGGCACTACGCCGGCT-AGAGAGACGGGATGCGC
* ** * *
20539969 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGT
125 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
*
20540034 GATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
190 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20540099 ACGACTCGTTTTCTTTTTTTCACGA-TTTTCAACACTTTTTGCGGTTCGAGATTTTTTAAAATTT
255 ACGACTCGTTTTCTATTTTTCATGATTTTTGAA-ACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* ** *
20540163 TTTTGGAAGGAGTTTTGGCCCCAATGTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACA
319 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * * *
20540228 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAATGTCTCCAT
384 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCAT
* * *
20540293 TTCAAACACTTTAATGGCTACTGACAGCAAACCTGTAAAATTTCAAATGCCCTTTAAGGGGGTGT
449 TTCAGACACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
20540358 GA-TTACTCGAGGTTTGATGAGAAATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATTGC
513 GAGTT-CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
20540422 ACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
577 ACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
20540487 T-CTGATGATGCTTCGGCAATGGTGCCCTGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
641 TCCTG-CGATGCTCCGACGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
*
20540551 CCAGCATGTGCTACAGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCT
704 CCAGCATGTGCTACCGTAACCCTC-GTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCT
* *
20540616 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCG
767 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
20540681 ACCAGAGAGGTGAGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
832 GCCAGAGAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
20540744 TGTTGTCGCGACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * *
20540809 CCGATGAAACGAGCGGGCTGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCTG
66 CCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
*
20540874 TGGAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGGCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
*
20540938 TATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
20541003 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGG-TTTTTTTAAATTTTTTCGGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
20541067 AGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAA
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAA
* * * *
20541132 ATTCATCTAAAAAGTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCGG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20541197 ACACTTTAATGGCTGCTAGCAACAAACTTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 ACACTTTAATGGCTACT-GCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
20541262 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATC
517 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
20541327 ATGTGCACACA-CCCCCGGCCCCCCGTTCATCGGAACCCAAATGCTGCCGGTCAGGTTCTCCAGC
582 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGC
* * * * *
20541391 GATGCTCCGATGATGGTTCCTCGGCGAAGAAAAATGCGGCACAAGCACATTCTCGAGCCCAGCAT
647 GATGCTCCGACGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
20541456 GTGCTACCGTAA----C--CC--T-CAGTC-----C-GG--T----T-CG-AT-CTTAGACTGGG
711 GTGCTACCGTAACCCTCGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * * * *
20541497 AATAAACTTCGTATGCCTAAGTCAACCCATGAAACGATCATACGGGCGCTCAGTCAGCCAGA-AG
776 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA-
*
20541561 GGCGGGATACGCAAG-C-----T-G---GGG-------AT-C--G--GTCGATCC
840 GGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * ** * * * * *
20541594 TGCTATCGCAACCCTCAGTCCACTCCAATCCTAGACTGGGAATGAACTCCGTACGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
20541659 CCGACGAAATGAGCTTGCGGGCGGGCGGGCGGGCGCTACGCCGGCCAGAAAGACGGGATGCGCAA
66 CCGACGAAACGA----GCGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* * *
20541724 GCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGGATATCTTCATATTTCTATGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* *
20541789 TTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
20541854 GACCCGTTTTCTATTTCTCACGATTTTTGCAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
20541919 CGGAAGGCA-TTTTGGCCCCAAACTTGGTACACGTGATCTTTGTATTTTTTTTGGCATGCACAAA
322 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
** ***
20541983 AAAATTCAATTAAAAACTCGATCCGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTT
* * *
20542048 CAGACTCTTTAATGGCTACTGGAAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
20542113 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCAATCGCACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * ** * *
20542178 TCATGTGCGCACACCCCCC-GCCCCCCGATCACCGAAACCCCAATACCATCGATTAGGTTCT-CT
580 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCT
* *
20542241 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
645 -GCGATGCTCCGACGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
20542306 CATGTGCTACCGCAACCCT--T--GG--------T---C-----TG-A-TCCG-AT-CTTAGACT
708 CATGTGCTACCGTAACCCTCGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACT
* *
20542347 GGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
773 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * * * **
20542412 GGGGCGGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCC
838 GAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * ** * *
20542469 TGCTGCCACAACCCTCGG-CCTGATCTGATCTTAGGCCGAAAAAGAACT-CGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * *
20542532 ACTGACGAAACGAGCGGATG-GGTAGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
65 ACCGACGAAACGAGCGG--GCGG--G-CGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGC
* ***
20542596 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
125 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
*
20542661 CATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
190 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20542726 ACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTT
255 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
20542791 TTTGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
320 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
20542855 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAGC-ATTTGAAAAAAGTGTCCCCAT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CAATTTGAAAAAAGTGTCCCCAT
**
20542919 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGCAT
449 TTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20542983 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAATATAAGGGCCAAGTATCG
513 GAGTTCTCGAGGTTTGATGAGGGAT-A--GG---------GGGCCAATATAAGGGCCAAGTACCA
* * *
20543048 GCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCTGCTGATCGTCGGAACCCCAATGCAG
566 GCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCC-CCCGATCGTCGGAACCCCAATGCCG
* * * *
20543113 CCGGTCAGGTTCTCCTGTGATGCTCCGACGATGGTGCTCCGGTGAAGAAAAATGCAGTACCAGCA
629 CCGGTCAGGTTCTCCTGCGATGCTCCGACGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCA
* * * ** ** *
20543178 CATGCCTGAGCCCAGCATGTGCTGCCGCAACTATCGATCCAATCCAATCTTAGACTGGGAAGGAA
693 CATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCG-TCCGGTCCAATCTTAGACT-GGAATGAA
* * * * *
20543243 CTCTGTATGCTTAGCCTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACAAGCGTGCGG
756 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * **
20543308 GCACTCAACCGGCCAGAGGGGCGGGTTACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAATGC
821 GCGCTCAGCCGGCCAGAGAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGC
*
20543373 TG-CAGATTC
886 TGTC-GATCC
* * * * ** *
20543382 TGCTGTCACAGCCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * * * * *
20543447 CTGACGAAACGAGTGGACGGGCGGGTGGGCGGGCACTACGCCGACTAGCGAGACAGGATGTGGAA
66 CCGACGAAACGA---G-CGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* *
20543512 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTATGCACATCTTCATATTT-T-TGCATGCCAATGC
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGC
20543575 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
190 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
20543640 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
255 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * *
20543705 TTCGGAAGGAGTTTTGG-CTAAAACCCAT-GTAGACGCGATCCTTGTATTTTTTTTGGCATGCAC
320 TTCGGAAGGAGTTTTGGCCCCAAA--CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* * *
20543768 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCAA
383 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCA
*
20543833 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
448 TTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
20543898 TGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
512 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
20543963 ACATCATGTGCGCACACCCCCCTGGCCGCCCCGATCGT-GAGAACCCCAATGTCGCCGGTCAGGT
577 ACATCATGTGCGCACACCCCCC-GGCC-CCCCGATCGTCG-GAACCCCAATGCCGCCGGTCAGGT
* * * *
20544027 TCTCC-GACGATTCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGTGGGACCAGCACATGCCCGA
639 TCTCCTG-CGATGCTCCGACGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * ** *
20544091 GCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATG
702 GCCCAGCATGTGCTACCGTAACCCTC-GTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATG
* * *
20544156 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGACGCTCAGC
765 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20544221 CGGCCAGAGGGGTGGGATACGCAAGCCAAGGATCGGCCGGGTCCCCTTCCGCGTGCTGCCCATCC
830 CGGCCAGAGAGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
*
20544286 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCAT
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCAT
20544338 GTGCTTAGAC
Statistics
Matches: 6103, Mismatches: 772, Indels: 515
0.83 0.10 0.07
Matches are distributed among these distances:
850 71 0.01
852 4 0.00
853 287 0.05
854 164 0.03
855 157 0.03
856 55 0.01
857 1 0.00
858 25 0.00
859 155 0.03
860 2 0.00
861 1 0.00
862 5 0.00
863 9 0.00
865 5 0.00
866 49 0.01
867 145 0.02
868 293 0.05
869 6 0.00
870 5 0.00
871 10 0.00
872 107 0.02
873 166 0.03
874 251 0.04
875 297 0.05
876 314 0.05
877 50 0.01
878 3 0.00
879 3 0.00
880 3 0.00
881 4 0.00
882 8 0.00
883 175 0.03
884 100 0.02
885 8 0.00
886 9 0.00
887 102 0.02
888 8 0.00
889 59 0.01
890 5 0.00
891 11 0.00
892 306 0.05
893 133 0.02
894 11 0.00
895 72 0.01
896 68 0.01
897 451 0.07
898 252 0.04
899 174 0.03
900 106 0.02
901 167 0.03
902 27 0.00
903 189 0.03
904 341 0.06
905 5 0.00
906 10 0.00
907 1 0.00
908 4 0.00
909 48 0.01
910 1 0.00
911 3 0.00
912 3 0.00
913 152 0.02
914 252 0.04
915 157 0.03
916 32 0.01
917 3 0.00
918 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGCGATG
CTCCGACGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGTAACCCTCGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGGG
ATACGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:20543028 original size:12 final size:12
Alignment explanation
Indices: 20543006--20543041 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
20542996 TTGATGAGGG
20543006 ATAAGGGGCCAAT
1 ATAA-GGGCCAAT
20543019 ATAAGGGCCAAT
1 ATAAGGGCCAAT
20543031 ATAAGGGCCAA
1 ATAAGGGCCAA
20543042 GTATCGGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.14
Consensus pattern (12 bp):
ATAAGGGCCAAT
Found at i:20543277 original size:26 final size:26
Alignment explanation
Indices: 20543226--20543278 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20543216 CCAATCCAAT
**
20543226 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCATATG
* *
20543252 CTTAGCCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
20543278 C
1 C
20543279 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:20544168 original size:26 final size:26
Alignment explanation
Indices: 20544130--20544182 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20544120 CTGGTCTGAT
*
20544130 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20544156 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20544182 C
1 C
20544183 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20544313 original size:904 final size:904
Alignment explanation
Indices: 20542339--20544335 Score: 2762
Period size: 904 Copynumber: 2.2 Consensus size: 904
20542329 CTGATCCGAT
*
20542339 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
20542404 CGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCC
* * * * ** *
20542469 TGCTGCCACAACCCTCGG-CCTGATCTGATCTTAGGCCGAAAAAGAACT-CGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20542532 ACTGACGAAACGAGCGGATGGGTAGACGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACTGACGAAACGAGCGGACGGGCAGACGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCA
*
20542597 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20542662 ATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
20542727 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
* * * *
20542792 TTGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 TCGGAAGGAGTTTGGCCCAAAACATGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
20542857 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAGCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCAATTTC
*
20542922 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCATGAGT
585 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCATGAGT
* * *
20542987 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAATATAAGGGCCAAGTATCGGCAC
650 TCTCGAGGTTTGATGAGGG--AAGAGG--------AGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
20543052 CCATCGCACATCATGTGCGCACACCCTCCCGGCCCTGCTGATCGTCGGAACCCCAATGCAGCCGG
705 CCATCGCACATCATGTGCGCACACCCTCCCGGCCCTCCCGATCGTCGGAACCCCAATGCAGCCGG
* * *
20543117 TCAGGTTCTCCTGTGATGCTCCGACGATGGTGCTCCGGTGAAGAAAAATGCAGTACCAGCACATG
770 TCAGGTTCTCCTGCGATGCTCCGACGATGGTGCTCCGGCGAAGAAAAATGCAGGACCAGCACATG
* * *
20543182 CCTGAGCCCAGCATGTGCTGCCGCAACTATCGATCCAATCCAATCTTAGACTGGGAAGGAACTCT
835 CCCGAGCCCAGCATGTGCTGCCGCAACCATCGATCCAATCCAATCTTAGACTAGGAAGGAACTCT
20543247 GTATG
900 GTATG
* * * *
20543252 CTTAGCCTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20543317 CGGCCAGAGGGGCGGGTTACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAATGCTGCAGATTC
66 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCC
* * * **
20543382 TGCTGTCACAGCCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * * *
20543447 CTGACGAAACGAGTGGACGGGCGGGTGGGCGGGCACTACGCCGACTAGCGAGACAGGATGTGGAA
196 CTGACGAAACGAGCGGACGGGCAGACGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCAA
* * *
20543512 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTATGCACATCTTCATATTTTTGCATGCCAATGCCA
261 GCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20543577 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
326 TTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
20543642 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
* *
20543707 CGGAAGGAGTTTTGG-CTAAAACCCAT-GTAGACGCGATCCTTGTATTTTTTTTGGCATGCACAA
456 CGGAAGGAG-TTTGGCCCAAAA--CATGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAA
20543770 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-ATGACCATTTGAAAAAAGTGTCCCAAT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGA-GACCATTTGAAAAAAGTGTCCCAAT
**
20543834 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGCAT
20543899 GAGTTCTCGAGGTTTGATGAGGG-AGAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
646 GAGTTCTCGAGGTTTGATGAGGGAAGAGGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
20543962 CACATCATGTGCGCACACCC-CCCTGGCCGC-CCCGATCGT-GAGAACCCCAATGTC-GCCGGTC
711 CACATCATGTGCGCACACCCTCCC-GGCC-CTCCCGATCGTCG-GAACCCCAATG-CAGCCGGTC
* * **
20544023 AGGTTCTCC-GACGATTCTCCGGCGATGGTGC-CCTGGCGAAGAAAAATGTGGGACCAGCACATG
772 AGGTTCTCCTG-CGATGCTCCGACGATGGTGCTCC-GGCGAAGAAAAATGCAGGACCAGCACATG
* * * * *** ** *
20544086 CCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACT-T
835 CCCGAGCCCAGCATGTGCTGCCGCAACCATCGATCCAATCCAATCTTAGACTAGGAAGGAACTCT
20544150 CGTATG
900 -GTATG
* * * * *
20544156 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20544221 CGGCCAGAGGGGTGGGATACGCAAGCCAAGGATCGGCCGGGTCCCCTTCCGCGTGCTGCCCATCC
66 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCC
* *
20544286 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCC
131 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
20544336 ATGTGCTTAG
Statistics
Matches: 954, Mismatches: 116, Indels: 37
0.86 0.10 0.03
Matches are distributed among these distances:
903 8 0.01
904 340 0.36
905 2 0.00
913 154 0.16
914 264 0.28
915 156 0.16
916 30 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTGAGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACGAAACGAGCGGACGGGCAGACGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCAA
GCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTGGCCCAAAACATGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCAATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCATGAGTT
CTCGAGGTTTGATGAGGGAAGAGGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCTCCCGGCCCTCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCC
TGCGATGCTCCGACGATGGTGCTCCGGCGAAGAAAAATGCAGGACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCATCGATCCAATCCAATCTTAGACTAGGAAGGAACTCTGTATG
Found at i:20544413 original size:185 final size:184
Alignment explanation
Indices: 20544101--20544704 Score: 735
Period size: 185 Copynumber: 3.3 Consensus size: 184
20544091 GCCTAGCATG
* * * * * *
20544101 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGATTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
* *
20544166 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGACGCTCAGCCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
20544231 GGTGGGATACGCAAGCCAAGGATCGGCCGGGTCCCCTTCCGCGTGCTGCCCATCC
131 GGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC-TCTGCGTGCTGCCAATCC
*
20544286 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATGTGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
* *
20544351 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * * * * * *
20544416 GGCAGGATGCGTAAGCCGGGGATCGATCGGGTCTCCCTCTGCATGTTGCTAATCC
131 GGTGGGATGCGCAAGCCGAGGATCGACCGGGTC-CCCTCTGCGTGCTGCCAATCC
* * * * * * * *
20544471 TGTTGCTGCAACCCTTGAG-CCGATCTGATCTTAGAATGGGAATGAACTCCTTATGCTTAGACTG
1 TGCTGCCGCAACCCTCG-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTG
* * * * *
20544535 GGAATGTACTCCGTATGCCTAAGTCAACCCACAAAACGACCGTGCGGGTGCTCAGCCGGCCAAAG
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * *
20544600 GGGTGGGATGCACAAGCTGAGGATCGACCGGGTCCTCCTCTGCGTGCTGCCGATCT
130 GGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCC-CCTCTGCGTGCTGCCAATCC
* * * * *
20544656 TGCTGCCGCAACCCTCAGTCTGG-CTCAATATTAGACTGGGAATGAACTC
1 TGCTGCCGCAACCCTCGGTCCGGTC-CGATCTTAGACTAGGAATGAACTC
20544705 TGTATGCCTA
Statistics
Matches: 352, Mismatches: 62, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
184 3 0.01
185 345 0.98
186 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTCTGCGTGCTGCCAATCC
Found at i:20544536 original size:26 final size:26
Alignment explanation
Indices: 20544500--20544552 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20544490 CCGATCTGAT
*
20544500 CTTAGAATGGGAATGAACTCCTTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
20544526 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
20544552 C
1 C
20544553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:20545423 original size:26 final size:26
Alignment explanation
Indices: 20545394--20545443 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20545384 GGTCGATCTG
20545394 AGACTGGGAATGAACA-CCGTATGCTT
1 AGACTGGGAATGAA-ATCCGTATGCTT
20545420 AGACTGGGAATGAAATCCGTATGC
1 AGACTGGGAATGAAATCCGTATGC
20545444 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAAATCCGTATGCTT
Found at i:20546318 original size:26 final size:26
Alignment explanation
Indices: 20546289--20546341 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20546279 CCGATCTGAT
* * *
20546289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACCCCGTATG
*
20546315 CTTAGACCGAGAATGAACCCCTTATG
1 CTTAGACCGAGAATGAACCCCGTATG
20546341 C
1 C
20546342 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACCCCGTATG
Found at i:20547625 original size:893 final size:890
Alignment explanation
Indices: 20544490--20549835 Score: 7191
Period size: 893 Copynumber: 6.0 Consensus size: 890
20544480 AACCCTTGAG
* * *
20544490 CCGATCTGATCTTAGAATGGGAATGAACTCCTTATGCTTAGACTGGGAATGTACTCCGTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
20544555 AAGTCAACCCACAAAACGACCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCACAAGCTGA
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * *
20544620 GGATCGACCGGGTCCTCCTCTGCGTGCTGCCGATCTTGCTGCCGCAACCC-TCAGTCTGG-CTCA
131 GGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAGTCCGGTCT-A
* * * * * *
20544683 ATATTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAACGGACAAGCACTAC
195 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCACTAC
* * * *
20544748 GCCAGCCAGAGAGATGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACAT
260 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20544813 CTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGC
325 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * ** *
20544878 CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTCAAAACTTTTTA
390 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
** * *
20544943 CGGTTTAGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCC
455 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
20545008 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGATGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
20545073 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
585 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
20545138 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
650 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * *
20545203 GCCAAGTACCAGCGCCCATTACACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTTGGAA
715 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA
* * * * **
20545268 CCCCAGTGCCGCCTGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGGCCCGGTGAAGAAAAATG
780 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT--TGC-ATGGTGCCCCGACGAAGAAAAATG
* * * * **
20545333 TGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACTGCAACCCTCAAT
842 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
20545382 CTGGTC-GATCTGAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATGAAATCCGTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
20545446 AAGTCAACCGACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCC-A
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * *
20545510 GGGATCGATCT-GGTCCCCCTATGCGTGTTGTCGATCCTGCTGCCACAACCC-TCAGTTCGGTTT
131 -GGATCGA-CTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAGTCCGGTCT
* * *
20545573 AATCTTAGACAGGGAATGAACTCCATATACCTAAGCCAACCGACGAAACGAGCAGTCGGGGGCGG
194 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-------GCGG
* ** * *
20545638 GCGGGCACTACGGGGGCCAGAGAGATGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
249 GCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
20545703 TTTAGGCACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
314 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
20545768 GTCCCTTAAGCCTTCACGTCATGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTATGATTTTT
379 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
*
20545833 GAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
444 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * **
20545898 AAACGTGATCCTTGTATTTTTGTT-GCATGCGC-AAAAAATTCAGCTAAAAACTTAAAGTGTACA
509 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
20545961 AGATTTTGGGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTATTGGCAGCAAA
574 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
20546026 CCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
639 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
20546090 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCAGTCCCCCC
704 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * *
20546154 GATCGTCGGAACCCCAATGCTGCCGGTTAGGTTCTCCGGTGATACTTCGGTGATGGTGCCCCGAC
769 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTT--G-CATGGTGCCCCGAC
* ** * * * *
20546219 GAAGAAAAATGCGGCACCGGCACATGCCCGAGCTTAGCCTATGCTGTCGTAACCCTCGGT
831 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
20546279 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGAGAATGAACCCCTTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
20546344 AAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACATGCTGG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * * * * *
20546409 GGATCGA-TCGGGTCCCCCTCAGTGTGCTGTTGATCCTACTGCAGCAA-CCATCAGTCTGGTCTG
131 GGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAGTCCGGTCTA
* *
20546472 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGGGCGAGCGGGCGGGCA
195 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA----CGAGCGGGCAGGCA
* * *
20546537 CTACGCCGGCCGGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGG
256 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
20546602 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
321 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
20546667 AAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTT
386 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
20546732 TTTGCGGTTTGAGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCTAAACTTGGTAAACGA
451 TTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
20546796 GATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
515 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20546861 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTA
580 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20546926 AAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATA
645 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
20546991 TAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGGGCCCCCCCGATCG
710 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCG
* * * * * * * ** *
20547056 TAGGAACCCCAATGCCGTCGATCAGGTTTTTCGGTGATGCTCTAGCTATGGTGCCCTGGTGAAGG
774 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-T-GC-ATGGTGCCCCGACGAAGA
* * *
20547121 AAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
836 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * * * *
20547176 CCGATCCGATCTTAGAATGGGAATGAACTTCATATGCTTAGACTAGGAATTAACTCGGTATGCTT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
20547241 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGA
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* ** * * * *
20547306 GGATCGACTGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCGCAACCCTTGA-TCCGATCCAA
131 GGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAGTCCGGTCTAA
** * * *
20547370 TCTTAGACAAGGAATGAACTTCGTA-CCCGTAAGCCAACCGATGAAACGAGCGGGCAGGCACTAC
196 TCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAACGAGCGGGCAGGCACTAC
* *
20547434 GCCGGCCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
260 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
20547499 CTTCATATTTCGGCGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
325 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
20547564 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTT
390 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
* * * *
20547629 CGATTCGGGATTTTTGAAAAATTTTTT-GGAAGGAGTTTTAGCCCCAAACATGGTAGACGTGATC
455 CGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20547693 CTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGATGCGTACAAGATTTTGTG
519 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
20547758 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAAT
584 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
20547823 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
649 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
20547888 GACCAAGTACTAGTACCCATCGCACATCATGTGTGCACA-CCCCCTGGCCCCCCCGATCGTCGG-
714 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
20547951 ACCCCAATGCCGCCGGTCAGGTTCT-C--CG--G--TG-ATGGTGCCCCGACGAAGAAAAATGCG
779 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTGCATGGTGCCCCGACGAAGAAAAATGCG
* *
20548008 GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGT
844 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * * *
20548055 CCGGTCTGATCTTAGACTGGAAATCAACTCTGTATGGTTAGATTGGGAATGAACTCTGTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
20548120 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGACGGGATGCGTAAGCCGG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * *
20548185 GGATCG-GTCGGGTCCCCCTTTACGTGCTGTCGATCCTACTACCGCAACCC-TC-GATCCGGTCT
131 GGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAG-TCCGGTCT
* * * *
20548247 GATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGC
194 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC----GAGCGGGC---A
20548312 GAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
252 G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
20548377 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGT
316 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
20548442 CCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATAATTTTTGA
381 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** *
20548507 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAG
446 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
20548572 ACGTGATTCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGATGTGTACAAG
511 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
** * *
20548636 ATTTCATGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
576 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
20548701 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATAGGGGGCC
641 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * ** *
20548766 AATATAAGGGCCAAGTACTAGCACCCATCGCATATCATGTGCGCACA-CCCCTTGGCCCCCTCGA
706 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
20548830 TCGTCGG-ACCCCAATGCCGCCGGTCAGGTTCT-C--CGA----TG-ATGGTGCCCCGACGAAGA
771 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTGCATGGTGCCCCGACGAAGA
* * * **
20548886 AAAATGCGACACCAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTC-AA
836 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * ** * *
20548940 CCTGGTCTGATCTTAGATTGGGAATGAAATCTATATGCTTAGACTAGGAATGAACTCTGTATGCC
1 CC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
20549005 TAAGTCAACCCATCGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCC
65 TAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * *
20549070 -AGGGATCGACAGGGTCCCCCTTTACGTGCTGTCAATTCTGCTGCCGCAACCC-TC-GATCTGGT
129 GA-GGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAG-TCCGGT
* * *
20549132 CTGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTAG
192 CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----A-
* *
20549197 GCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGG
252 ---GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGG
20549262 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
313 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20549327 GGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
378 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
20549392 TGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTAGCCCCAAACTTGG
443 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
20549457 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTAC
508 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
20549522 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
573 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
20549587 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
638 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
20549652 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGTGCACACCCCCCCCGG-CCCC
703 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCC
* * * * *
20549716 TCGATCGTCGGAACCCCAATGCCGTCGGTCAGCTTCTCCGGGGATGCTCCGACGATGGTGCCCCG
767 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-TG-C-ATGGTGCCCCG
* * * *
20549781 ACAAAGAAAAATTCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAAC
829 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
20549836 ATCCGATCTT
Statistics
Matches: 3939, Mismatches: 438, Indels: 144
0.87 0.10 0.03
Matches are distributed among these distances:
878 2 0.00
879 257 0.07
880 2 0.00
881 1 0.00
882 1 0.00
883 14 0.00
884 2 0.00
885 3 0.00
886 393 0.10
887 463 0.12
888 222 0.06
889 198 0.05
890 38 0.01
891 244 0.06
892 269 0.07
893 484 0.12
894 154 0.04
895 50 0.01
896 6 0.00
897 412 0.10
898 250 0.06
899 146 0.04
900 8 0.00
901 258 0.07
902 62 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
GGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTCAGTCCGGTCTAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTGCATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
Found at i:20548095 original size:26 final size:26
Alignment explanation
Indices: 20548066--20548116 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20548056 CGGTCTGATC
20548066 TTAGACTGGAAATCAACTCTGTATGG
1 TTAGACTGGAAATCAACTCTGTATGG
* * *
20548092 TTAGATTGGGAATGAACTCTGTATG
1 TTAGACTGGAAATCAACTCTGTATG
20548117 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGAAATCAACTCTGTATGG
Found at i:20548575 original size:887 final size:892
Alignment explanation
Indices: 20544494--20549835 Score: 7147
Period size: 887 Copynumber: 6.0 Consensus size: 892
20544484 CTTGAGCCGA
* * *
20544494 TCTGATCTTAGAATGGGAATGAACTCCT-TATGCTTAGACTGGGAATGTACTCCGTATGCCTAAG
1 TCTGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * * * * * *
20544558 TCAACCCACAAAACGACCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCACAAGCTGAGGA
65 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
20544623 TCGACCGGGTCCTCCTCTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCAGTCTGG-CTCAATAT
130 TCGATCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCT-AATCT
* * * **
20544687 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAA--------CGGACAAGCA
194 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AATGGGCGGGCGGGCGGGCA
* * * *
20544744 CTACGCCAGCCAGAGAGATGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGC
258 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
20544809 ACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCT
323 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * **
20544874 AAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTCAAAACTT
388 AAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* ** * *
20544939 TTTACGGTTTAGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTG
453 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
20545004 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGATGTGTACAAGATTTT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
20545069 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
583 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
20545134 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATAT
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** * *
20545199 AAGGGCCAAGTACCAGCGCCCATTACACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTT
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
* * * **
20545264 GGAACCCCAGTGCCGCCTGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGGCCCGGTGAAGAAA
778 GGAACCCCAATGCCGCCGGTCAGGTTCT-C-GCGA-GCT----CGATGGTGCCCCGACGAAGAAA
* * * * ** *
20545329 AATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACTGCAACCCTCAATCTGG
836 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * * *
20545386 TC-GATCTGAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * *
20545450 CAACCGACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
20545515 CGATCTGGTCCCCCTATGCGTGTTGTCGATCCTGCTGCCACAACCCTCAGTTCGGTTTAATCTTA
131 CGATCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTA
* * * *
20545580 GACAGGGAATGAACTCCATATACCTAAGCCAACCGACGAAACGAGCAGTCGG-GGGCGGGCGGGC
196 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--A-TGGGCGGGCGGGCGGGC
** * *
20545644 ACTACGGGGGCCAGAGAGATGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
257 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
20545709 CACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
322 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
20545774 TAAGCCTTCACGTC-ATGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTATGATTTTTGAAAC
387 TAAGCCTTCACG-CGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
20545838 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACG
451 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* **
20545903 TGATCCTTGTATTTTTGTT-GCATGCGC-AAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATT
516 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
20545966 TTGGGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGA
581 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20546031 AAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
20546095 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCAGTCCCCCCGATCG
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * * *
20546159 TCGGAACCCCAATGCTGCCGGTTAGGTTCTCCGGTGATACTTCGGTGATGGTGCCCCGACGAAGA
776 TCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-GCGA-GC-TC---GATGGTGCCCCGACGAAGA
* ** * * * * *
20546224 AAAATGCGGCACCGGCACATGCCCGAGCTTAGCCTATGCTGTCGTAACCCTCGGTCCGA
834 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
20546283 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGAGAATGAACCCCT-TATGCCTAAG
1 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA-CTCTGTATGCCTAAG
* * * * * *
20546347 TCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACATGCTGGGGA
65 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
20546412 TCGATCGGGTCCCCC-TCAGTGTGCTGTTGATCCTACTGCAGCAACCATCAGTCTGGTCTGATCT
130 TCGATCGGGTCCCCCTTTA-CGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCT
* *
20546476 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG--A-AATGGGCGAGCGGGCGGGCAC
194 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAATGGGCGGGCGGGCGGGCAC
* * *
20546538 TACGCCGGCCGGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGA
259 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
20546603 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
324 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
20546668 AGCCTTCACGTC-AAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTT
389 AGCCTTCACG-CGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
20546732 TTTGCGGTTTGAGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCTAAACTTGGTAAACGA
453 TTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
20546796 GATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
517 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20546861 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTA
582 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20546926 AAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATA
647 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
20546991 TAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGGGCCCCCCCGATCG
712 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCG
* * * * * * ** *
20547056 TAGGAACCCCAATGCCGTCGATCAGGTTTTTCGGTGATGCTCTAGCTATGGTGCCCTGGTGAAGG
776 TCGGAACCCCAATGCCGCCGGTCAGG-TTCTC-GCGA-GCTC--G--ATGGTGCCCCGACGAAGA
* * * *
20547121 AAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGA
834 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * * * * *
20547180 TCCGATCTTAGAATGGGAATGAACT-TCATATGCTTAGACTAGGAATTAACTCGGTATGCTTAAG
1 TCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * *
20547244 TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
65 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * ** * * * *
20547309 TCGA-CTGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCGCAACCCT-TGATCCGATCCAATC
130 TCGATC-GGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTAATC
** * * * * *
20547372 TTAGACAAGGAATGAACTTCGTA-CCCGTAAGCCAACCGATG--A-AA----CGAGCGGGCAGGC
193 TTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAACAATGGGCGGGCGGGCGGGC
* *
20547429 ACTACGCCGGCCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
257 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
20547494 CACATCTTCATATTTCGGCGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCT
322 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
20547559 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACT
387 TAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * * *
20547624 TTTTTCGATTCGGGATTTTTGAAAAATTTTTT-GGAAGGAGTTTTAGCCCCAAACATGGTAGACG
452 TTTTGCGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
20547688 TGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGATGCGTACAAGATT
516 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
20547753 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
581 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
20547818 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
20547883 ATAAGGACCAAGTACTAGTACCCATCGCACATCATGTGTGCACA-CCCCCTGGCCCCCCCGATCG
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
20547947 TCGG-ACCCCAATGCCGCCGGTCAGGTTCTC-CG-G-T-GATGGTGCCCCGACGAAGAAAAATGC
776 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAGCTCGATGGTGCCCCGACGAAGAAAAATGC
* *
20548007 GGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGG
841 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
20548059 TCTGATCTTAGACTGGAAATCAACTCTGTATGGTTAGATTGGGAATGAACTCTGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * *
20548124 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGACGGGATGCGTAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * *
20548189 CGGTCGGGTCCCCCTTTACGTGCTGTCGATCCTACTACCGCAACCCTC-GATCCGGTCTGATGTT
131 CGATCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTAATCTT
*
20548253 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGCGAGCAC
195 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA-TGGGCGGGCGGGCGGGCAC
20548318 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
259 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20548383 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTA
324 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
20548448 AGCCTTCACGCGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATAATTTTTGAAACTTT
389 AGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
** *
20548513 TTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGA
454 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * **
20548578 TTCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTCA
519 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
20548642 TGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20548707 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAGGGATAGGGGGCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * ** *
20548772 AGGGCCAAGTACTAGCACCCATCGCATATCATGTGCGCACA-CCCCTTGGCCCCCTCGATCGTCG
714 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCG
*
20548836 G-ACCCCAATGCCGCCGGTCAGGTTCTC-CGA--T-GATGGTGCCCCGACGAAGAAAAATGCGAC
779 GAACCCCAATGCCGCCGGTCAGGTTCTCGCGAGCTCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * **
20548896 ACCAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTC-AACCTGG
844 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GG
* * * *
20548945 TCTGATCTTAGATTGGGAATGAAATCTATATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * *
20549010 CAACCCATCGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGA
66 CAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
20549075 TCGA-CAGGGTCCCCCTTTACGTGCTGTCAATTCTGCTGCCGCAACCCTC-GATCTGGTCTGATG
130 TCGATC-GGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTAATC
* ** **
20549138 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTAGGCGGGC
193 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AATGGGCGGGCGGGCGGGC
* *
20549203 ACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGGTTTAG
257 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTAG
20549268 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
321 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
20549333 TTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
386 TTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
20549398 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTAGCCCCAAACTTGGTAGACG
451 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
20549463 TGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGATT
516 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
20549528 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
581 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
20549593 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
20549658 ATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGTGCACACCCCCCCCGG-CCCCTCGATC
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATC
* * * *
20549722 GTCGGAACCCCAATGCCGTCGGTCAGCTTCTCCGGGGATGCTCCGACGATGGTGCCCCGACAAAG
775 GTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-GCGA-GCT----CGATGGTGCCCCGACGAAG
* * *
20549787 AAAAATTCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAAC
833 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
20549836 ATCCGATCTT
Statistics
Matches: 3938, Mismatches: 439, Indels: 136
0.87 0.10 0.03
Matches are distributed among these distances:
879 256 0.07
880 4 0.00
881 2 0.00
882 2 0.00
884 1 0.00
885 3 0.00
886 393 0.10
887 483 0.12
888 222 0.06
889 201 0.05
890 35 0.01
891 248 0.06
892 268 0.07
893 483 0.12
894 155 0.04
895 51 0.01
896 12 0.00
897 402 0.10
898 246 0.06
899 145 0.04
900 7 0.00
901 257 0.07
902 62 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGATCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAATGGGCGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCGCGAGCTCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
Found at i:20548989 original size:26 final size:26
Alignment explanation
Indices: 20548951--20549003 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20548941 CTGGTCTGAT
* *
20548951 CTTAGATTGGGAATGAAATCTATATG
1 CTTAGACTAGGAATGAAATCTATATG
* *
20548977 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCTATATG
20549003 C
1 C
20549004 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCTATATG
Found at i:20551955 original size:894 final size:886
Alignment explanation
Indices: 20549839--20553202 Score: 4280
Period size: 858 Copynumber: 3.8 Consensus size: 886
20549829 TCGCAACATC
* *
20549839 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
** * * * *
20549904 CACTACACCGACCAGAGAGACGGGATGCACAAGCCGTGTATCGAT-AGGTGGTAGGTGGGTTTTG
66 CGTTACGCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAG
** * *
20549968 GTGCATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCC
131 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** *
20550033 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGACAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * *
20550098 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAA-ATAGTTTTT-GCCCCAAACCTGGTAGA
261 TTTTTACCGTTCGAGATTTTTTAAAATTTTTTCGGAAGA-A-TTTTTGGCCCCAAACTTGGTAGA
* ** *
20550161 CGTGATCCC-TGAATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTC-GAACTGTACAA
324 CGTGA-CCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAG-AGTGTACAA
* *** * *
20550224 GATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCGGTCGCTTTAATGGCTACTGGTAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* * *
20550289 CTATAAAATCTCAAATCCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
20550354 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
517 CAATATAAGGGCCAAGTACCA-CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGA
* *
20550419 TCGCCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGACGGTGCTCCGGCAATGCTCTGGCGATGG
581 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C-G-G---C-G--ATGCTCCGGCGATGG
* ** *
20550484 TGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT-CGCAATCC
635 TGCCCC-GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-TCCGCAACCC
* * * * *
20550548 TT-GTCTGGTTCCAATCTTAGACTGGGAATTGAGCTTCTGTATGC-TAGACT-GGAA-GGACTCC
698 TTGGTCTGG-TCCAATCTTAGGCTGAGAA-TGAACTCCT-T-TGCTTAGACTGGGAATGAACTCC
* ***
20550609 GTATGCCTAA-TCAACACCAACCAAAA-GAGC-GCGGGCGCTCAGTC-GCCAAGAAGGGAAAGGA
759 GTATGCCTAAGTCAAC-CC-A-CAAAACGAGCGGCGGGCGCTCAGCCGGCC-AG-AGGGGCGGGA
* * * * * *
20550670 TGCGAAAGCCG-CGATCGACCCAGGTCCCCCTCTGTGTGTTGCCGATCTTGCTACCATAACCCTC
819 TGCGCAAGCCGAGGATCGA-TCA-GTCCCCCTCT-CGTGCTG-CGATCTTGCT-GCATAACCCTC
20550734 GGTCCGGT
879 GGTCCGGT
*
20550742 CCGATCTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGG
1 -CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGA----GCGGGCGG
* * * *
20550807 GCGCGCGGGTGCTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGG
61 GCG-G-GCGT--TACGCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGG
** * *
20550872 TGGGTTTAGAAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTTTGTATATTCATAC
122 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20550937 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
187 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * * *
20551002 TTTTAAAACTTTTTGCGGTTTGAGATTTTTAAAAATTTTTTTGAAAGAATTTTTGGCCCCAAACT
252 TTTCAAAACTTTTTACCGTTCGAGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCCCAAACT
* * * *
20551067 TGGTAGACATGACCCTTGTGTTTTTGTTGGCATCCAAAAAAAAATTCAGCTAAAAACTCAGAGTA
317 TGGTAGACGTGACCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAGAGTG
* **
20551132 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGATAG
382 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
* *
20551197 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAG
447 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20551262 GGGGCCAATATAAGGGCCAAGTACCATACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCC
512 GGGGCCAATATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * *
20551327 CAGATCACCGGAACCCCAATGTCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTC
577 CAGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC-C
* * * *
20551391 CGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTTCCGTAACCCTTGGTCC
640 CGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTTGGTCT
*
20551456 GGTCCAATCTTAGGCTGAGAATGAACTCCATTTGCTTAGATTGGGAATGAACTCCGTATGCCTAA
705 GGTCCAATCTTAGGCTGAGAATGAACTCC-TTTGCTTAGACTGGGAATGAACTCCGTATGCCTAA
20551521 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG
769 GTCAACCCACAAAACGAGCG-GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG
20551586 ATCGATCAGTTCCCCCTCTCCGTGCTGCTGATCTTGCTGTCATAACCCTCGGTCCGGT
833 ATCGATCAG-TCCCCCTCT-CGTGCTGC-GATCTTGCTG-CATAACCCTCGGTCCGGT
* * * *
20551644 CTGATCTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGTGG
1 C-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGG
* * * * *
20551709 GCGTTACGCTGACCAAAGAGATGGGATGCGCAAACCGTGGATTGATAAGGTGGTAGGTGGGTTTA
65 GCGTTACGCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTA
* * * * *
20551774 GGCACATCTTCATATTGCTGCATCCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
20551839 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
*
20551904 CTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCCCAAACTTGGTAGAC
260 CTTTTTACCGTTCGAGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCCCAAACTTGGTAGAC
* *
20551969 GTGACCCTTGTATTTTTTTTGGCATCCACAAAAAAATTCAGCTAAAAACTCATAGTGTACAAGAT
325 GTGACCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACAAGAT
* *
20552034 TTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
20552099 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
20552164 TATAAGGGCCAAGTACCGCACCCATTGCACATCATGTGCGCACATCCCCCCGGCCCCCAAGATCG
520 TATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCAGATCG
* *
20552229 CCAGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGA---T---G-G-T-GT-CCCCGCGAAGAA
584 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGCGAAGAA
* * *
20552284 AAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTTCCGCAACCCTAGATCTGGTCCAATC
649 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTTGGTCTGGTCCAATC
* *
20552349 TTAGGCTGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCA
714 TTAGGCTGAGAATGAACTCC-TTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
** * *
20552414 TGAAACGAGCGGACGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCC-AGG---GATCA-
778 CAAAACGAGCGG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAG
20552474 ---------C---C--CG-TC--G--G--T---CC-C-GT----T
842 TCCCCCTCTCGTGCTGCGATCTTGCTGCATAACCCTCGGTCCGGT
* * *
20552489 CGATCCTAGACTGGTAATGAACTCCATACGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
** * * * *
20552554 CGGGCACCATGCC-AGGCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTCGGTGGG
66 C-GTTA-C--GCCGA-CCAAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGT--G
* *
20552618 TTTAGGCACATTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTCAAT
124 ----GG----TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
20552683 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
181 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
*
20552748 CATGATTTTCAAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCC
246 CATGATTTTCAAAACTTTTTACCGTTCGAGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCC
*
20552813 CAAACTTGGTAGACGTGACCCTTGTATTTTTTTTGGCATCCACAAAAAAATTCAGCTAAAAACTC
311 CAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTC
* * *
20552878 ATAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAAACACTTTAATGGCTAC
376 AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
20552943 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
441 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * ** *
20553008 GGATAGGGGGTCAATATAAGGGCCAAGTACCACACCCATCACACATCATGTGCAAACAACCCCTC
506 GGATAGGGGGCCAATATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCAC-ACCCCCC
* * * * * *
20553073 GGCCCCTCC-GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGTTGCTCCGGTGATG
570 GGCCCC-CCAGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* *
20553137 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCC
634 GTGCCCCG-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCC
20553202 T
698 T
20553203 CGGCCCATTG
Statistics
Matches: 2214, Mismatches: 184, Indels: 159
0.87 0.07 0.06
Matches are distributed among these distances:
844 58 0.03
845 4 0.00
846 1 0.00
847 1 0.00
848 40 0.02
849 2 0.00
850 2 0.00
851 2 0.00
854 3 0.00
857 1 0.00
858 468 0.21
859 3 0.00
861 3 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 1 0.00
867 2 0.00
868 6 0.00
869 54 0.02
880 5 0.00
883 4 0.00
884 175 0.08
885 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
892 1 0.00
894 459 0.21
895 52 0.02
896 4 0.00
897 1 0.00
898 8 0.00
899 3 0.00
900 18 0.01
901 99 0.04
902 136 0.06
903 27 0.01
904 53 0.02
907 1 0.00
908 12 0.01
909 2 0.00
910 1 0.00
911 2 0.00
912 113 0.05
913 374 0.17
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG
CGTTACGCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
TTTTTACCGTTCGAGATTTTTTAAAATTTTTTCGGAAGAATTTTTGGCCCCAAACTTGGTAGACG
TGACCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGCC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGCGAAGAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCCGCAACCCTTGGTCTGGTCCAATCTT
AGGCTGAGAATGAACTCCTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
AACGAGCGGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCAGTCCC
CCTCTCGTGCTGCGATCTTGCTGCATAACCCTCGGTCCGGT
Found at i:20552387 original size:26 final size:26
Alignment explanation
Indices: 20552348--20552400 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20552338 CTGGTCCAAT
* *
20552348 CTTAGGCTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
*
20552374 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
20552400 C
1 C
20552401 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:20553969 original size:26 final size:26
Alignment explanation
Indices: 20553933--20553985 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20553923 ACAGTCTAAT
* *
20553933 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20553959 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20553985 C
1 C
20553986 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20555070 original size:912 final size:904
Alignment explanation
Indices: 20553264--20557503 Score: 5249
Period size: 867 Copynumber: 4.8 Consensus size: 904
20553254 CGACGAACGA
* *
20553264 GCGGGCGGGCGGGCGGGCACTACTCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
20553329 GTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCGTGCCAATGCCACTTTTATGGATTGTAA
65 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
20553394 ATTCACACAATGGTCCCTTAAGCCTTCACAG-GAAGTTTCATGGCAAGACGACTCGTTTTCTATT
130 ATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
20553458 TTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTCTTTAAAATTTTTTCGGAAGGAGTTTTGG
194 TTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
20553523 CCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTTTGGCAGGCACAAAAAAATTCAACTAAA
259 CCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAA
*
20553588 AACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATG
321 AACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATG
* * * *
20553653 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTTTGAGTTCTCGAGGGTTG
385 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* * *
20553718 TTGAGGGATAGGAGGACAATATAAGGGCCAAGTACCAGCTCCCATCTCACATCATGTGCGCACAC
450 ATGAGGGATAGG-GGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
20553783 CCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGTTGCTCCGG
514 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG
* * *
20553848 CAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGC
579 C-ATGGTG-CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
* * * * *
20553913 AACCCTCAGTAC-AGTCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAAACTGGGAATGAAC
642 AACCCTCGGT-CTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
20553977 TCCGTATGCCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTTAGCCGACCAGAGG-GTCGGG
706 TCCGTATG-CCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAG-CAGG
* * *
20554041 ATGCACAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTT
769 ATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCT--TGATCCTGCTGCCGCAACCCTC
* * * * *
20554106 GGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAG-AACGAGTG
832 GATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA-AGAAACGAGTG
20554170 GACGGGCGG
896 GACGGGCGG
* * * * * * *
20554179 GCGGACGGGCAGGCGAGCACTACGCCGACTAGAG-GACGGGATGCGAAAGCCATGGATTGATAGG
1 GCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
20554243 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTCA
65 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
20554308 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
20554373 TTCACGATTGTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGC
195 TTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
20554438 CCCAAACTTGGTAGACATGATCCTTGTGTTTTTTTTGGCGTGCACAAAAACATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-ATTCAGCTAAAAAC
20554503 TAGAAGTGTACAAGATTTTGTGACCATTTGTAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
324 TAGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
20554568 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
388 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
**
20554633 AGGGATAGAGGGATGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
453 AGGGATAG-GGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * ** * *
20554698 TCCCGGCCCCCCCGATCATCGAAACCTCAATGCCAACGGTTAGGTTCTCCGACGATGCTCTGGCG
517 -CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGC-
* * ** * * * *
20554763 ATGGTGCCCTGATGAAGAAAAATACGAAACCAGGACATGCTCGATCCCAGCATGTGCTATCGCAA
580 ATGGTGCCC-GACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
** * * * * *
20554828 CCCTTTGTCTGGTTTGATCCTAGACTAGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTTC
644 CCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * *
20554893 GTATGCCTAAGTCAACCCACAAAATGAGCATACTGGCGCTCAGTCGGCCAGAGGGGTAGGATGCG
709 GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATGCG
* * * *
20554958 TAAGCC-GAGGATCGGTCGGGTCCCCCTTTGCGTGCTGTGGATCCTGCTGCCACAACCCTCGGTC
774 CAAGCCAG-GGATCGGTCGGGTCCCCCTCTGCGTGCT-T-GATCCTGCTGCCGCAACCCTCGATC
** * * *
20555022 CGATCCAATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGGCAACCGACGAAACGA---G-CT
836 CGATCTGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGCCAACCGAAGAAACGAGTGGACG
*
20555082 GGTGG
900 GGCGG
* * * *
20555087 GCGGGC---AGGTGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAAGG
1 GCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
20555149 TGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTTGCATGCAAATGCCCATTTTTATGGC-TGTA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCGTGCCAATG-CCATTTTTATGGCTTGTA
* *
20555212 AATTCATACAATGGTCCCTTAAGCC-TCAAGTGAAGTTTCATGGC-AGACGAGCTC-ATTTCTAT
129 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTAT
*
20555274 TTTTCATGATTTT--AAACTTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAA--AG-TTT
193 TTTTCATGATTTTCAAAAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
*
20555334 GGCCCCAAACTT-G-AGTCGTGAT-CTTGTA-TTTTTTTGGCAATGCAC--AAAATTCAGCTAAA
257 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCACAAAAAATTCAGCTAAA
* *
20555393 AA-TCGAAGTGTACAAGATTTTGTGACCATATGAAAAAGTGTCCCCATTTTCAGACACTTTAATG
321 AACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCA-TTTCAGACACTTTAATG
20555457 GCTA-TGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
385 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* * *
20555520 ATGAGGGATAGGGG-CCATATAA--GCCAAGTACCA-C-GCTATCGCACATCATGTGCGCACA-C
450 ATGAGGGATAGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
20555579 CCCCCGG---CCCCGATCG-GGGGACCCCAATG-C-CCGGTCAGG-TCTCCG-C-ATG-T---GC
515 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGC
* * *
20555631 AT--T-CCCG-CGAAG-AAAAT-TGGCA-CAGCAC--GCCCGAGCTCAGCACGTGCGTGACC-AA
580 ATGGTGCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGC-T-ACCGCA
* * *
20555686 TACCCTCGTTC-AGTCTGATCTTAGACTAGAAATGAACTCCGTATGCTTAG-CTGTGAATGAACT
643 -ACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * *
20555749 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGAGCATGATG
707 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATG
* * *
20555814 CGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGTAACCCTC-AT
772 CGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCT--TGATCCTGCTGCCGCAACCCTCGAT
* * * * *
20555878 TCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTGAGCCGACCGAAGAAACGAGCGGACG
835 CCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAAGAAACGAGTGGACG
*
20555943 GGCAG
900 GGCGG
* * *
20555948 ACGGGCGGGTGAGCGGGCACTACGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
20556013 GTGGTAGGTGGGTTTAGGCAACATCTTCAT-TTT-TGTGTGCCAATGCCATTTTAAT-GATTGTA
65 GTGGTAGGTGGGTTTAGGC-ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
20556075 AACTCATACAATGGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
129 AATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
20556139 TTTTCATGATTTTCAAAACTTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTGGGAAGGATTTTT
193 TTTTCATGATTTTCAAAACTTTTT-GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
*
20556203 GGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACACAAAAATTCAGCTAAA
257 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA-AAAAATTCAGCTAAA
* *
20556268 AACTCA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACAGTTTAAT
321 AACT-AGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
20556332 GGCTAGTGGCAGCAAACATGTAAAATCTCAAATGCTCGTTAAGCGGGTGTGAGTTCTTGAGGTTT
384 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
* * * *
20556397 GATGAGGGATAGGGGGCCAATATAAAGGCCTAGTACCAGCACCCATCGCACATTATGTGCGCACA
449 GATGAGGGATA-GGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
20556462 CCCCACCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-G-T---
513 CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
20556518 G-ATGCT--CCGGCGAAGAAAAATATGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCCACA
578 GCATGGTGCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* *
20556580 ACCCTCGGTCTGGTCTGATCTTAGACTAGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
643 ACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
20556645 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGAGCATGATGC
708 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATGC
20556710 GCAAGCCAGGGA-----------------T-C---C-TG---CTG-T--CGCAACCCTCGATCCG
773 GCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTTGATCCTGCTGCCGCAACCCTCGATCCG
* * * **
20556747 ATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTGAGCCGACCGATGAAACGAGTGGGTGGGC
838 ATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAAGAAACGAGTGGACGGGC
*
20556812 CG
903 GG
* *
20556814 ACGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCTAGCCGTGGATCGATAGGG
1 GCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
20556879 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
20556944 CTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
20557009 TCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCC
196 TCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
20557074 CCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACT
* * * *
20557139 CA-TAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACAGTTTAATTGCT
325 -AGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
20557203 AGTGGCAGCAAACATGTAAAATCTCAAATGCTCGTTAAGCGGGTGTGAGTTCTTGAGGTTTGATG
388 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* *
20557268 AGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGCG--CA-CCC
453 AGGGATA-GGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
20557330 CCCGGCCCCCCCGATCGCCGGAACCCTAATGTCGCCGGTCAGGTTCTCCAACGATGCCCCGGTGA
517 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG-CA
* *** * * * *
20557395 TGGTGCTCCGATGAAGAAAAATGCAGAACCAGAACATGCCCAAGCCCAGCATGTGCTACCGTAAC
581 TGGTGC-CCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* *
20557460 CCTCGGTCT-TTTTCGATCTTAGACT-GTGAATGAACTCCGTATGC
645 CCTCGGTCTAGTCT-GATCTTAGACTAG-GAATGAACTCCGTATGC
20557504 CTAAGCCAAC
Statistics
Matches: 2933, Mismatches: 286, Indels: 249
0.85 0.08 0.07
Matches are distributed among these distances:
856 2 0.00
857 48 0.02
858 130 0.04
859 38 0.01
860 15 0.01
861 11 0.00
862 6 0.00
863 29 0.01
864 100 0.03
865 182 0.06
866 152 0.05
867 370 0.13
868 8 0.00
869 18 0.01
870 1 0.00
871 8 0.00
872 13 0.00
873 14 0.00
874 2 0.00
875 26 0.01
876 54 0.02
877 40 0.01
878 136 0.05
879 12 0.00
880 7 0.00
882 15 0.01
883 4 0.00
884 43 0.01
885 8 0.00
886 11 0.00
888 17 0.01
889 20 0.01
890 56 0.02
891 52 0.02
892 57 0.02
893 29 0.01
894 43 0.01
895 111 0.04
896 10 0.00
897 7 0.00
898 1 0.00
899 15 0.01
900 1 0.00
901 4 0.00
902 35 0.01
903 24 0.01
904 43 0.01
905 91 0.03
906 13 0.00
908 10 0.00
909 1 0.00
911 8 0.00
912 354 0.12
913 169 0.06
914 230 0.08
915 29 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
GCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTA
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
GATAGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCATGGTG
CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
TCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATGCGCAAGCCA
GGGATCGGTCGGGTCCCCCTCTGCGTGCTTGATCCTGCTGCCGCAACCCTCGATCCGATCTGATC
TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAAGAAACGAGTGGACGGGCGG
Found at i:20556639 original size:26 final size:26
Alignment explanation
Indices: 20556599--20556651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20556589 CTGGTCTGAT
20556599 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* *
20556625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
20556651 C
1 C
20556652 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:20559102 original size:26 final size:26
Alignment explanation
Indices: 20559066--20559118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20559056 TCAGTCCGAT
*
20559066 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20559092 CTTAGACTGGGTATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20559118 C
1 C
20559119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20559989 original size:26 final size:26
Alignment explanation
Indices: 20559953--20560005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20559943 CTGGTCCGAT
*
20559953 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20559979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20560005 C
1 C
20560006 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20560170 original size:887 final size:881
Alignment explanation
Indices: 20557475--20560383 Score: 3771
Period size: 872 Copynumber: 3.3 Consensus size: 881
20557465 GTCTTTTTCG
* *
20557475 ATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGTGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--GC--GCGGGCA
* * * * **
20557540 GGCGGGCACTACGCCAACCAGAGAGACAGGATGCGCATGCTGTGGATCGATAGGGTGGTAGGTTT
62 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20557605 GTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAAT
127 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** *
20557670 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG-TTTTCATTTTTCACGATTTT
* * * *
20557735 TAAAACTTTTTGCGATTCCAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGACCCAAACTTGG
256 TGAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCTAAACTTGG
* * *
20557800 TAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTATAC
320 TAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20557865 AAGATTTTGTAACCATTTGAAAAAA-TGTCCCCATTTCTAACACTTTAATGGCTACTGCCAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG-CAGCAA
20557929 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
448 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
*
20557994 GCCAATATAAGGGCCAAGTAGTC-GCACCCATCGCACATCATGTGTGCACACCCTCCT-GGCCCC
513 GCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGTGCA-ACCC-CCTCGGCCCC
*
20558057 CTCGATCGTCGAAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACGATGGTTCCCT
575 C-CGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACG-T-G---CC-
* * * *
20558122 GGTGAAGAAAAATGCGGCACAGTACATGCCCGAGCCCAGCATGTGCTGTCGTAA--CAC-TC-GG
633 -G-GAAGAAAAATGCAGCACAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGTCTGG
*
20558183 --C---C-----C---G-AT---C-TG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTC
696 TCCGATCTTAGACTGGGAATGAACTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
20558228 AACCCACAAAACGAACATGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCTGGGATC
761 AACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-AAAGTCGGGGATC
* * * * *
20558293 GATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTTGGTCCGATCCA
825 GAACGGGT-CCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGTCCA
* * * *
20558351 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACG-GAAGGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCG-CGGGCAGGC
* * *
20558415 GGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
20558480 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGT
130 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
20558545 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC-ATTTTTCACGATTTTTGA
* * * * *
20558610 AACTTTTTACGATTAGGGATTTTTTAAAATTTTTTTCGGAAGGATTTTTTGCCCTAAACTAGGTA
259 AACTTTTTGCGATTCGAGATTTTTTAAAA-TTTTTTCGGAAGGA-TTTTTGGCCTAAACTTGGTA
* *
20558675 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAAGGT-GAAGTGTACAA
322 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAA
*
20558739 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT-GCAGCAAAC
* *
20558804 CTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAATTCTTGAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* * * * *
20558869 CAATATAATGGG-TAAGTACCAGCACCCATCGCACATCATGTGCGC-ACCCCCCCGACCCCCCCA
515 CAATATAA-GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAACCCCCTCGGCCCCCCGA
* *
20558932 GTCGCCGGAACCCCAATGCCGCCGGTCAA-GTTCTCCGGTGATGGTCCGACGATGGTGCCCTGGC
579 -TCGTCGGAACCCCAATGCCGCCGGT-AAGGTTCTCCGGTGATGCTCCGAC----GTG-CC-GG-
* * *
20558996 AATGAAAAATGCAGCACCAGCACATGTCCGAGCCCAGCATGTGTTGCCGTAACCCTCGGT-TCAG
635 AA-GAAAAATGCAGCA-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC-GTCT-GG
* *
20559060 TCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGTATGAACTCTGTATGCCTAAGT
696 TCCGATCTTAGACTGGGAATGAAC-TTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
20559125 CAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGCAAGAGGGGTAGGATGCGAAAGTCGGGGAT
760 CAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-AAAGTCGGGGAT
* * * * *
20559190 CG-ACTGGGTTTCCCACTACGTGCTGCCGATCCTGCTGCCGCAACCCTC-AGTCCGGTCCG
824 CGAAC-GGG-TCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGA-TCCGGTCCA
*** *
20559249 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTAACGAAACGAGCGCGCGGGC-GACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCAGGCG
* * *
20559313 GGCACTACCCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAAGTGGGTTT
66 GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
20559378 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
20559443 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCATTTTTCATGATTTTCGAAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCATTTTTCACGATTTTTGAAA
*
20559508 CTTTTTGCCG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCGTAAACTTGGTAGA
261 CTTTTTG-CGATTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC-TAAACTTGGTAGA
*
20559572 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCGGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGA
*
20559637 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTATTGGCTACTAGCAGCAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT-GCAGCAAACCT
* * * * * *
20559702 ATAAAATATCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTAATGAGGGATAGGGGGCGA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
*
20559767 ATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGTGCAAACCCCCTCGGCCTCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC-AACCCCCTCGGCC-CCCCGAT
* * * *
20559832 CGTCGGAACCCTAATGCCGTCGGTGAGGTTCTCCGGCGATGCTGCC-AC-TG-C-GAAGAAAAAT
580 CGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCT-CCGACGTGCCGGAAGAAAAAT
* *
20559893 GCAGCACTAGCACACGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAG
644 GCAGCAC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG-TCTGGTCCGATCTTAG
20559958 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
707 ACTGGGAATGAACTT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * ** * * *
20560023 ACGAGCGCGCGGGTGCTCAGTAGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGAACAGGTCC
771 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA-AAGTCGGGGATCGAACGGGTCC
* * * *
20560088 ACCTCTACATGCTACCGATCCTGCTGTCACAACCCTCGATCTGGTCTA
835 -CCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGTCCA
*
20560136 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGC--G--GGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCAGGCG
* * *
20560193 GGCACTACGTCG-CCTAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTT
66 GGCACTACGCCGACC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
20560257 TAGGCACATCTTCATATATTCTATTGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TAGGCACATCTTCATAT-TTCTA-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
20560322 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG--AACGTTCATTTTCTATTTTTCACGATT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC--TCGTTTTC-ATTTTTCACGATT
20560384 NNNNNNNNNN
Statistics
Matches: 1788, Mismatches: 171, Indels: 141
0.85 0.08 0.07
Matches are distributed among these distances:
869 1 0.00
870 7 0.00
871 73 0.04
872 286 0.16
873 193 0.11
874 14 0.01
875 1 0.00
876 50 0.03
877 1 0.00
879 3 0.00
880 78 0.04
881 6 0.00
882 83 0.05
883 16 0.01
884 1 0.00
886 10 0.01
887 245 0.14
888 6 0.00
889 1 0.00
890 1 0.00
891 3 0.00
893 2 0.00
894 8 0.00
895 63 0.04
896 222 0.12
897 175 0.10
898 230 0.13
899 9 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (881 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCAGGCG
GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCATTTTTCACGATTTTTGAAA
CTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCTAAACTTGGTAGACG
TGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAACCCCCTCGGCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACGTGCCGGAAGAAAAATGCAGCAC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGTCTGGTCCGATCTTAGACTGGGAAT
GAACTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAAAGTCGGGGATCGAACGGGTCCCCTCTACGTGC
TACCGATCCTGCTGCCACAACCCTCGATCCGGTCCA
Found at i:20563719 original size:26 final size:26
Alignment explanation
Indices: 20563683--20563735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20563673 GTTGACTTAG
*
20563683 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20563709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20563735 G
1 G
20563736 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20564626 original size:26 final size:26
Alignment explanation
Indices: 20564583--20564635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20564573 GTTGACTTAG
*
20564583 GCATACGGAGCTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
20564609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
20564635 G
1 G
20564636 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:20564744 original size:900 final size:897
Alignment explanation
Indices: 20561384--20565951 Score: 5963
Period size: 901 Copynumber: 5.1 Consensus size: 897
20561374 NNNNNNNNNN
* * * *
20561384 TCTTGTACACTTCGAGTTTTCA-CTGAATTTTTTT-TTCTTGCCAAAAAAAATACAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
20561447 TCTA-CAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATGTCGAACCGTAAAAAGG
66 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-G
* *
20561511 TTT-TGAAATCCGTG-AAAATAG-AAACAAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
130 TTTCTAAAAT-CGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
20561573 A-GGACCATTTGTATGAATTTACAAGCCATAAAAAT-GCA-TGGGACGTAGGAATATGAAGA--T
193 AGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
* *
20561633 GCCTAAACCCACCTACCA-CCTATCGATCCAGGGCTTGCGTATCCCGTCTCTCCTGGCCGACGTA
257 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-CTGGCCGACGTA
* ** *
20561697 GTGCCCGCCCACCCACCCACT-G-TTCATCGGTT-GCTTAGGCATACAGAGTTCATTCCCAGTCT
321 GTGCCCGCCCGCCTGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
* ** * * * * *
20561759 GAGATCAGACTGGACCGAAGGTTGCGGTAGTAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGA
386 AAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCGA
* * * *
20561824 TCCCTGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCTTTTTGTGGGTTGA
451 TCCC-GGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * * *
20561889 CTTAGGCATAAGGAGTTCATTCGCAATATAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GAA
514 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
20561953 CAGGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTGTTCTTCA
579 CA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * * * * *
20562018 CCGGGGCACCAGCACCGGAGCATTGCCGGAGAACCTGACTGGCGGCATTGGAGTTCCAACGATCG
643 TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * * * *
20562083 GTGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGTTTGTACTTGGCACTTATATTGGT
708 G-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
20562148 CCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
772 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
20562213 TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
837 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
20562274 TCTTGTACACTTCCGAGTTTTT-GCTGAATGTTCTTGTGCTTGCCAAC-AAAATACAAGGATCAC
1 TCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
20562337 GTCTACCAAGTTTGGGGCCCAAAACTCCTTCC-AAAAAA-TTTAAACAATC-CCAACCGTAAAAA
65 GTCTACCAAGTTTGGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
*
20562399 ATTTC--AAAT-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGTAAGGCTTA
129 GTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTA
20562461 AGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGTA-ATATATATGAAGAT
193 AGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGTAGA-A-ATATGAAGAT
* *
20562525 GTGCCT-AACCCACCTGCCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGT
255 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
20562589 AGTGCCCGCCCGCC-GCACCCGCTCGTTTCATCG-GTGGCTTAGGTATACAGAGTTCAATCCCAA
320 AGTGCCCGCCCGCCTG--CCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAG
* ** * * ** *
20562652 TCTAAGATCAGACCAGAC-CATGGGTTATGGCAGTAGGATCGCCAAAACGCAGAGGGGGACCCAA
383 TCTAAGATCAGACCAGACTGA-GGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGA
* * *
20562716 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCCCCCGCACGCTCGTTTCATGGG
447 TCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGG
* ** **
20562781 TTGACTTAGGTATACGGAGTTCATTCGTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
510 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
20562846 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCT
575 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * * *
20562911 TTGTCGGGG---CAT---C--ATCA-C--CGGAGAACTTGACCGGTGGCATTAGGGTTCTGACGA
640 TCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
20562965 TCGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTG
705 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
20563030 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
770 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
20563095 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
835 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
20563158 TCTTGTACACTTCAATTTTTTAGCTGAATATCTTTT-TGCATGCCAAAAAAAAATACGAGGATCA
1 TCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCC-AACAAAAATACAAGGATCA
* * * * *
20563222 CGTTTATCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAC
64 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
*
20563287 GTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTA
129 GTTTCT-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * **
20563351 AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACATAGAAATATGAAGATGTG
193 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
* * * * *
20563416 CCTAAACCCACCTACCACGCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGA
258 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * *
20563481 GCCCGCCCGCCCGTCTGCCAGCTAGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCTCAGT
323 GCCCGCCCGCCTG-C--CCA-CTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGT
* * * * * *
20563546 CTAAGATC-GCACCGGACTGAAGGTTGCGGTAGTAGGATCAACAGCACGTAGAAGGGGACCCGGT
384 CTAAGATCAG-ACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGAT
* * * * * *
20563610 TGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTTAGCGCCCGCACGCTCATTTCGTTGGT
448 CGATCC-CGGCTTGCGCATCCCGCCCCTCTGGC-CGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
20563675 TGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
511 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
20563740 GACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTAGGGCATTTGCTGGTGCCGCATTTTTCTT
576 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * *
20563805 CGTCGAGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGCGACATTGGGGTTCTGGCGAT
641 CATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * *
20563870 CAGAGGGCCAGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
706 CGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
20563935 GCCCCCCATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
770 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
20564000 GTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
835 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
20564063 TCTTGTACGCTTTGATTTTTTAACTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
20564128 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGT
66 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
* *
20564193 TTCAAAAATCGT-AAAATATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
131 TTCTAAAATCGTGAAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
20564257 GGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGTATGCAGAAATATGAAGATGTGCC
195 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
* *
20564322 CAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGC
260 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * **
20564387 CCTCCCGCCTGTCCACTCGTTTTGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
325 CCGCCCGCCTGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * ** *
20564452 TCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACTCGATCGATCCT
390 TCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCC-
* * *
20564517 CGGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTA
454 CGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
20564582 GGCATACGGAGCTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
518 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
20564647 TCGAGGGTTGTGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGG
583 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* ** * * *
20564712 GCACCATCGTCGGAGCATCGTCGGAGAACCTGATTGGCCGTATTAGGGTTCCGACGATCGAGGGG
648 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGG
** * * * *
20564777 GCCGGGTGGGGTGTTAGCACATGATGTACGATGAGTGCTGGTACATGGCCCTTATTTTGGCCCCC
712 GCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** **
20564842 TATCGATCATCAAACCAGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
776 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
20564907 TGCCAGTAGCTAATAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAA
841 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20564964 TCTTGTACACTTCAAGTTTTTAGCTGAATTTATTTGCGCATGCCAA-AAAACATAAAAGGATCAC
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCAC
* **
20565028 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATACT--AATCCACAAAA
65 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAA-CCGTAAAA
* *
20565091 AGTTTCTAAAATCATGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
128 AGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
20565156 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
193 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
* * * *
20565221 CCTACACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG-CTAGTGTAG
258 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAG
** * *
20565285 TGCCCGCCCGCCTG----CTCGTTTTGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAATCT
322 TGCCCGCCCGCCTGCCCACTCGTTTCATCGATTGGCTTAGGCATACAG-AGTTCATTCCCAGTCT
* * * * *
20565345 AAGATCAGATCC-GACTGAGGGTTGCGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGACCG
386 AAGATCAGA-CCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCG
* ** * ** * *
20565409 ATCCCTGACTTGCTTATCCCGCCCCTCTGGCCGACTGTGCGCGTGCACGCCCGTTACGTGGGTTG
450 ATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
20565474 ACTTAGGCAAACGGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATACCCAGTCTAAGATCAGA
513 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
20565539 CCAGACCGAGGGTTGCGGTAGTAGATGCTGGGCTCAGCCATGTGTTGGTGCCGCATTTTTCTTC-
578 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * *
20565603 CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAGCGGCGGGATTGGGGTTCC-AGCGATC
643 TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC
* * ** *
20565667 GGGGGGGCCGGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTAGTTCACCCTTATATTGC
707 -GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
20565732 CCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
771 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
20565797 TTTGCTGCCAGTAGCCATTAAAGTGTTTTAAATGCGGACACTTTTTTCAAATGGTCACAAAA
836 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
20565859 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATTACAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
20565924 TCTACCAAGTTTGGGGCCAAAACTCCTT
66 TCTACCAAGTTTGGGGCCAAAACTCCTT
20565952 TTGAAAAAGG
Statistics
Matches: 3232, Mismatches: 366, Indels: 155
0.86 0.10 0.04
Matches are distributed among these distances:
883 7 0.00
884 205 0.06
885 51 0.02
886 39 0.01
887 44 0.01
888 70 0.02
889 99 0.03
890 70 0.02
891 101 0.03
892 49 0.02
893 297 0.09
894 42 0.01
895 247 0.08
896 323 0.10
897 267 0.08
898 2 0.00
899 1 0.00
900 332 0.10
901 470 0.15
902 6 0.00
903 4 0.00
904 299 0.09
905 207 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
TTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
CGCCCGCCTGCCCACTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
Found at i:20566214 original size:26 final size:26
Alignment explanation
Indices: 20566178--20566230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20566168 GTTGACTTAG
20566178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20566204 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20566230 G
1 G
20566231 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20567027 original size:26 final size:26
Alignment explanation
Indices: 20566998--20567050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20566988 GTTGACTTAG
20566998 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
* *
20567024 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
20567050 G
1 G
20567051 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:20567924 original size:26 final size:26
Alignment explanation
Indices: 20567895--20567947 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20567885 GTTGACTTAG
20567895 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
20567921 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20567947 G
1 G
20567948 ATTCGGTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20568823 original size:26 final size:26
Alignment explanation
Indices: 20568787--20568839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20568777 GTTGACTTAG
*
20568787 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20568813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20568839 G
1 G
20568840 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20570619 original size:26 final size:26
Alignment explanation
Indices: 20570580--20570629 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20570570 GACTTAGGCA
*
20570580 TACGGAGTTTATTC-CAAGTCTAAGCG
1 TACGGAGTTCATTCTC-AGTCTAAGCG
20570606 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
20570630 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCG
Found at i:20571273 original size:909 final size:903
Alignment explanation
Indices: 20566266--20571923 Score: 7365
Period size: 902 Copynumber: 6.3 Consensus size: 903
20566256 AGCACATGCA
* * * *
20566266 TGGGGTTCCGATGATCGGGGG-GCCGGTGGGGGTGTGCACACATGATGTGTGATGGGTGTTGGTA
1 TGGGGTTCCGACGATCGGGGGAGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
20566330 CATGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGC
65 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
20566395 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
130 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
20566460 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TAGAATGTTTTTGTGCATGCCAACAAA
195 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAA
* * * **
20566524 AATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCGTTTTGAAAAAATTTTAAAAAATTT
259 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* ** *
20566589 CGAACCGCGAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
324 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* **
20566654 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
20566719 TACGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCACATCCCGTCTCTCT
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
20566784 GGCCAACGTAGTGCCCAC-CT-TCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
519 GGCCGACGTAGTGCCCCCGCTCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *
20566847 AATTCATTCCC-GATCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCAGGATTGGCAGCACGCA
583 AGTTCATTCCCAG-TCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATCGGCAACACGCA
** * * ** * *
20566911 GAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGATTGAGCGCTCACACG
646 GAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
20566976 CTCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
711 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
* * * *
20567041 CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGT
776 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
20567106 GCTGCATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGG-AT
841 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCGGCAT
* * * * *
20567169 TGGGGTTCCGACGATCGGGGGGGCC-GAGGGGTGTGCGCAGATGATGTGGGATGGGTGATGGTAC
1 TGGGGTTCCGACGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
20567233 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAAAGCA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
20567298 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTC
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTC
20567362 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
195 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * **
20567427 ATACAAGGATCACGTCTATCAAGTTTGGGACCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCC
260 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
* * * * * *
20567492 AAATCGCAAAACA-TTTCGAAAATCATGAAAAATAGAGAACGAGTTGTCTTGCCATGAAACGTCA
325 GAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
20567556 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAG-CATAAAAATTGAATTGGCATGCAGAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCATGCAGAA
* *
20567620 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCACCCCGTCTCTC
453 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
20567685 TGGTCGACGTAGTGCCCAC-C-CGTCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
518 TGGCCGACGTAGTGCCCCCGCTCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * *** * * *
20567745 AGTTCATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTACAACAGCAGGATCGGTAGCCCGCAG
583 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATCGGCAACACGCAG
* **
20567810 AGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT-AGCGCCCGCAAAC
647 AGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
20567874 TCGTTTCAG-GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
712 TCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
** * * ** *
20567938 CCAGTCTAAGATTCGG-TGGGGCTGAGGGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGCTGG
776 CCAGTCTAAGA-TCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGG
*
20568002 TGCCGCATTTTTCTTC-ACTGGGG---CA----C----CATCGTCGGAGAACCTGACCGACGGCA
840 TGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG-CGGCA
20568055 T
903 T
* * * * *
20568056 TTGGGTTTCGACGATCGAGGGG-GTCGGGGCGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
1 TGGGGTTCCGACGATCG-GGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
20568120 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACAGCCCCTTAAAAAGC
65 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
20568185 ATTGGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAATGTCTGAAATGGGGACACTCTTTTC
130 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20568250 AAATGGTCACAAAATCTTGTACAGATT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAA
195 AAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
20568314 AATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACACCTTCTGAAAAAAGTTTAAAAAATCC
259 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * *
20568379 CTAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
324 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * **
20568444 CATGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGAAATGCAGAAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
20568509 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCGCATCCCGTCTCTCT
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
20568574 GGTCGACGTAGTG-CCCCGC-CGCCCGCCC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
519 GGCCGACGTAGTGCCCCCGCTCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *** **
20568636 AGTTCATTCCCAGTGTAAGAT-TGCACCAGACCAAGGGTTGCAGTAGCAAGATCAATAGTACGCA
583 AGTTCATTCCCAGTCTAAGATCAG-ACCAGA-CGAGGGTTGCGGTAGCAGGATCGGCAACACGCA
* * * *
20568700 GAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACG
646 GAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
20568765 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
711 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
* * * * * *
20568830 CCAGTCTAAGATCGGATCGAACAGAGGTTTACGGTAGCACATGTTGGGCTCGGGCATGTGCTGGT
776 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
20568895 GCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
841 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG-CGGCAT
* * * * * * *
20568959 TGAGGTTTCGATGATC----GA-----GAGGGTGTGCGCTCATGTTGTGCGATTGGTGCTGGTAC
1 TGGGGTTCCGACGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
20569015 TTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
20569080 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
20569145 AATGGTCACAAAATCGTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAA
196 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * * *
20569210 TACAAGAATCACTTCTACCGAGTTTGGGGACAGAACTCCTTTTGAAAAAATTTTAAAAAA-CTCA
261 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
* *
20569274 AACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
326 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
20569339 TGAAGGCTTAACGGTCCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATA
391 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
20569404 TGAA-ATGTGCCTAAGCCCACCTACCAACCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGA
456 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * * * *
20569468 CCGGCGTAGTG--CCTACTCGCCCGCCCGCCCGCTTGTTTCTTTGGTTGACTTAGGCAT-CGGAG
521 CCGACGTAGTGCCCCCGCTCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * * * *
20569530 TTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGTGGTAGTAGGATTGGCAACACACAGAG
585 TTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAG
* * * * * * *
20569595 GGGGACCCGGCCGATCCCCGACCTGTGCATCCCACCCCTCTGGTCGACTGAGCGCCCGCGCGTTC
649 GGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
20569660 GTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCTAGTTTACGCAAACAGAGTTCATTCCCA
714 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * *
20569725 GTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
779 GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * **
20569790 GCATTATTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCAAAGAACCTGACCG-GTGACAT
844 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGCG-G-CAT
* * * * *
20569851 TGAGGTTCCGACGAT---------CGGGGGGGTGCGCGCACATGATGTACGATGGGTACGGGTAC
1 TGGGGTTCCGACGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
20569907 TTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAAGTCACA-CCCCTTAAAGAGCA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
20569971 TTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTC
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTC
* * *
20570035 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCAAAAAAAA
195 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * ** * *
20570100 ATAAAAGGATCATGTCTACCAAGTTTGCAGACAAAACGCCTTCTGAAAAAATTTTAAAAAATCCC
260 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
* * *
20570165 GAACTGCAAAAAGTTTCAAAAATCATGAAACATA-AAAACCGAGTCGTCTTGCCACGAAACTTCA
325 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCA
* *
20570229 CGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
20570294 AATGAAGATATGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
20570359 GGCCGACGTAGTGCCTGCCCGCTCGCCCGCTCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATAC
519 GGCCGACGTAGTGCC--CCCGCTCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
20570424 AGAGTTCATTCCCCGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGGCAACAAGC
581 GGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATCGGCAACACGC
* * * * * * *
20570489 AGAGGGGGACCCAATCGATCCCTGACATGCGCATACTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
645 AGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
20570554 GCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTTATTCCAAGTCTAAGCGTACGGAGTTCATT
710 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
* * * * *
20570619 CTCAGTCTAAGATCGGACCGGACTGAAGGTTGCAAG-AGCACATGCTGGGCTCGAGCATGTGCTG
775 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGTAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
20570683 GTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCAGAGCGTCGTCGGAGAACCTGACCAGCAGCA
839 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCGGCA
20570748 T
903 T
* * *
20570749 TGGGGTTCCTACGATCGGGGGAGCCGGGGGGGCTGTGCGCACATCATGTGCGATGGGTACTGGTA
1 TGGGGTTCCGACGATCGGGGGAGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
20570814 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGC
65 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
20570879 ATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
130 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20570944 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAA
195 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * ** * *
20571009 ATACAAGGGTCACGTCTACCACGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAACTCTC
260 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
* *
20571074 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
325 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
20571139 GTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGTCATTGGCATGCAGAAAT
390 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*** * *
20571204 ATGAAGATGTAATTAAACCAAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
455 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
20571269 GCCGACGTAGTG--TCCGCCCGCCCG---GCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
520 GCCGACGTAGTGCCCCCGCTCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
20571329 TTGATTCCCAGTCTAAGATCAGATCCA-ACAGAGGGTTACGGTAGAAGGATCAGCAACACGCAGA
585 TTCATTCCCAGTCTAAGATCAGA-CCAGAC-GAGGGTTGCGGTAGCAGGATCGGCAACACGCAGA
* ** ** * ***
20571393 GGGGGACCCGGCCGATCCCTAACTTGTGCATCTTGCCCCTCTGGCCGGTTGAGTATCCGCACGCT
648 GGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
20571458 CGTTTCGTGGGTTGACTTTA-GAATACGAAGTTCATTCCTAGTCTAACCATACAGAGTTCATTCC
713 CGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
* ** * *
20571522 CAGTCTAAGATCGGATCGGACCGAGGGTTATGG-CGACACATACTGGGCTCGGGCATGTGCTGGT
777 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAG-CACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
20571586 GCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGGAT
841 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCGGCAT
** * * *
20571650 TGGGGTTCCGGTGATCGGGGGGGCCGGGGGGCGTTATGCGCACTTGATGTGCGATGGGTGCTGGT
1 TGGGGTTCCGACGATCGGGGGAGCCGGGGGG-G-TGTGCGCACATGATGTGCGATGGGTGCTGGT
20571715 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
64 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
20571780 CATTTAAGATTTTACAAGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACACTTTTTT
129 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
20571845 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
194 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
20571910 AATACAAGGATCAC
259 AATACAAGGATCAC
20571924 ATCTTGAACC
Statistics
Matches: 4175, Mismatches: 498, Indels: 165
0.86 0.10 0.03
Matches are distributed among these distances:
885 1 0.00
886 23 0.01
887 26 0.01
888 462 0.11
889 3 0.00
890 9 0.00
891 326 0.08
892 688 0.16
893 216 0.05
894 264 0.06
895 2 0.00
896 2 0.00
897 176 0.04
898 412 0.10
899 6 0.00
900 4 0.00
901 320 0.08
902 694 0.17
903 67 0.02
904 3 0.00
905 10 0.00
907 8 0.00
908 75 0.02
909 371 0.09
910 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
TGGGGTTCCGACGATCGGGGGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCCCGCTCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAGGG
GGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGCGGCAT
Found at i:20572370 original size:26 final size:25
Alignment explanation
Indices: 20572334--20572385 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20572324 GTTGACTTAG
20572334 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
*
20572360 GCATATGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
20572385 G
1 G
20572386 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:20572749 original size:855 final size:854
Alignment explanation
Indices: 20571074--20572776 Score: 2457
Period size: 855 Copynumber: 2.0 Consensus size: 854
20571064 AAAAACTCTC
* *
20571074 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAAC
* * * **
20571139 GTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGTCATTGGCATGCAGAAAT
66 GTGAAGGCTCAAGAGACCACTGCATGAATTTACAAGCCATAAAAATGTCATTGGCACACAGAAAT
* *
20571204 ATGAAGATGTAATTAAACCAAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
131 ATGAAGATGTAACTAAACCAAACTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
* * * * *
20571269 GCCGACGTAGTGTCCGCCCGCCCGGCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTGAT
196 GCCGACGTAGTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTAAT
** * * *
20571334 TCCCAGTCTAAGATCAGATCCAACAGAGGGTTACGGTAGAAGGATCAGCAACACGCAGAGGGGGA
261 TCCCAGTCTAAGATCAGATCCAACAGAGCATTACAGCAGAAAGATCAGCAACACGCAGAGGGGGA
** ** ** * * *
20571399 CCCGGCCGATCCCTAACTTGTGCATCTTGCCCCTCTGGCCGGTTGAGTATCCGCACGCTCGTTTC
326 CCCAACCGATCCCTAACTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCATTTC
*
20571464 GTGGGTTGACTTTAGAATACGAAGTTCATTCCTAGTCTAACCATACAGAGTTCATTCCCAGTCTA
391 GTGGGTTGACTTTAGAATACGAAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTA
* * *
20571529 AGATCGGATCGGACCGAGGGTTATGGCGACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATT
456 AGATCAGACCGGACCGAGGGTTATGGCGACACATACTGGGCTCGGGCAGGTGCTGGTGCCGTATT
* ** **
20571594 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGGATTGGGGTTCC
521 TTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTCC
* * * *
20571659 GGTGATCGGGGGGGCCGGGGGGCGTTATGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCC
586 AGCGATCGGGGGGGCCGAGGGGCGTTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
20571724 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGA
651 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTAAGA
20571789 TTTTACAAGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTC
716 TTTTACAAGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
20571854 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
781 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGG
20571919 ATCACATCTT
845 ATCACATCTT
*
20571929 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAGTTAAC
1 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAAC
* * * *
20571994 GTGAAGGCTCAAGGGACCACTGTATGAATTTACAAGCCATAAAAATTTCATTGGCACATAGAAAT
66 GTGAAGGCTCAAGAGACCACTGCATGAATTTACAAGCCATAAAAATGTCATTGGCACACAGAAAT
** * * * * *
20572059 ATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGCACATGCCGTCTCTCTG
131 ATGAAGATGTAACTAAACCAAACTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
* * * *
20572124 GCCGGCGTAGTGCCCACCCGTCCGCCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTAA
196 GCCGACGTAGTGCCCACCCGCCCG-CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTAA
* * * * * *
20572189 TTCCCAGTCTAAGATCAGATCGGACCA-AGCATTACAGCA-ACAAGATCGGTAGCATGCAGAGGG
260 TTCCCAGTCTAAGATCAGATC-CAACAGAGCATTACAGCAGA-AAGATCAGCAACACGCAGAGGG
* **
20572252 GGACCCAATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCAT
323 GGACCCAACCGATCCCTAACTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCAT
* * * **
20572317 TTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
388 TTCGTGGGTTGACTTTA-GAATACGAAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAG
* * * *
20572381 T-TAAGATCAGACCGGATCGAGGGTTGTGGC-AGCACATGCTGGGCTCGGGTAGGTGCTGGTGCC
452 TCTAAGATCAGACCGGACCGAGGGTTATGGCGA-CACATACTGGGCTCGGGCAGGTGCTGGTGCC
* * * *
20572444 GTATTTTTCTTTGTCGAGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTTGG
516 GTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGG
* *
20572509 GTTCCAGCGATCGGGGGGGTCGAGGGG-G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
581 GTTCCAGCGATCGGGGGGGCCGAGGGGCGTTATGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
20572572 GGCCCTTATATTGGCCCTCTATCCCTCGTCAAACCTTGAGAACTCACACACCCTTAAAGAGCATT
646 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATT
* * * * * *
20572637 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAA
711 TAAGATTTTACAAGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACACTTTTTTCAAA
20572702 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATA
776 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGCATGCCAAAAAAAATA
20572767 CAAGGATCAC
840 CAAGGATCAC
20572777 GTCTACCAAT
Statistics
Matches: 749, Mismatches: 93, Indels: 14
0.88 0.11 0.02
Matches are distributed among these distances:
853 218 0.29
854 9 0.01
855 330 0.44
856 189 0.25
857 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (854 bp):
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAAC
GTGAAGGCTCAAGAGACCACTGCATGAATTTACAAGCCATAAAAATGTCATTGGCACACAGAAAT
ATGAAGATGTAACTAAACCAAACTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
GCCGACGTAGTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTAAT
TCCCAGTCTAAGATCAGATCCAACAGAGCATTACAGCAGAAAGATCAGCAACACGCAGAGGGGGA
CCCAACCGATCCCTAACTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCATTTC
GTGGGTTGACTTTAGAATACGAAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAGGGTTATGGCGACACATACTGGGCTCGGGCAGGTGCTGGTGCCGTATT
TTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTCC
AGCGATCGGGGGGGCCGAGGGGCGTTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTAAGA
TTTTACAAGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAAAAAATACAAGGA
TCACATCTT
Found at i:20573198 original size:26 final size:26
Alignment explanation
Indices: 20573162--20573240 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20573152 GTTGACTTAG
20573162 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
20573188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20573214 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20573240 G
1 G
20573241 ATCAGATCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20574815 original size:26 final size:26
Alignment explanation
Indices: 20574779--20574831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20574769 GTTGACTTAG
**
20574779 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20574805 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20574831 G
1 G
20574832 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20576023 original size:875 final size:874
Alignment explanation
Indices: 20573909--20589432 Score: 13525
Period size: 893 Copynumber: 17.5 Consensus size: 874
20573899 CCGCTCGCCT
* * * * * * * *
20573909 GCTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGAATCAGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA
** * * * *
20573974 GGGTTGCGATAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCAC
* * *
20574039 CAT--------CA-C--CGGAGAACCTGACAGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
131 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCG
** *
20574093 ATGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCC
196 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
20574158 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
261 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
20574223 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTT
326 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
20574288 GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
391 GAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** *
20574353 GGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACTATAAAATGTTTCGAAAATCAT
456 GGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCAT
* *
20574417 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
20574482 AATTT---A--C------A----ATT-CCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
20574531 CTCCTTATCGATCCACGGCTTGGGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCACC
651 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * * ** *
20574596 CGCTCGTTTCATCGATTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAAACCAAATCG
716 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCG
** * * * * * * * **
20574661 AGGGTTGCGGCAGTGGGATTGACAGAACGCATAGGGGGAGCCGACCGTTCCTCGAG-TTATGCAT
780 AGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCG-GCTTGCGCAT
* * *
20574725 CCCGCCCCTCTGGTCGGCTGAGCGCCTGCAC
844 CCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
**
20574756 GCTCGGCTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGAC-T-----TA--G-G------C---G--T-A-C----GGAGTTCATT
* ** *
20574821 CCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGATAGCACATGCTGGACTCGGGCATGTGCTGG
40 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
20574886 TGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCAGTAT
105 TGCCGCATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * *
20574951 TGGGGTTTCGGTGATCAGGTGGGTCGGGGGGGTCGGGGGGGTGTGTGCACATGATGTGCGATGGG
170 TGGGGTTTC-G-G--C-----GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
20575016 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCAT
226 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
20575081 CAAAAAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGATATGGGGACA
291 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
20575146 CTTTTTTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGC
356 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGC
* * * * *
20575211 CAACAAAAATACAAGGATCACGTATTCCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAAAGTAAA
421 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAA
20575276 AAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
486 AAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20575341 AAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCA
551 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCA
* * * *
20575406 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACAGCTTGTGCATCCC
616 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
20575471 GTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATAC
681 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * ** * * * *
20575536 GGAGTTCATTCCAGTCTAAGTTTAGATCGGATTGAGGGTTGCAGCAGCAAGATCGGCAGCACATA
746 GGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
* *
20575601 GAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCAC
811 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
20575665 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCCGTCTAAGATCGGACCAAACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA
* * * * *
20575730 GGGTTGTGGCAGCACATTCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCTCCAGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCAC
* **
20575795 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCACTGGGGTTTCGGCGATCAAGGGGGCCA
131 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-
* * * *
20575860 GGGGGGGTGTGTGCACATAATGTGCAATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATC
195 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
20575925 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
260 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
20575990 AGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
20576055 CGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCATGTATTCCAAGTTT
390 CGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
20576120 GGGGCCAAAACTCCTTCCGAAAAAAAGTAAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCA
455 GGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCA
20576185 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
20576250 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAGACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
20576315 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCAGCGTAATGCTCGCCCGTCCGC
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * *
20576380 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCAAAGATCAGACTGAACC
715 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACC
* * * *
20576445 GAGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGGGAGACCC-AGCTGATCCCCGACTTGCGCA
779 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCA
*
20576509 TCCCGCCCCTCTGGCCGGCTGAGCACCCGTAC
843 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
20576541 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATT
1 GCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------C-G--T-A-C----GGAGTTCATT
* * * * * *
20576606 CCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCTGGACATGCTGCGCTCAGGCATGTGCTGG
40 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * ** *
20576671 TGTCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCGTCGAAAAATCTGAGTGGCGGCA
105 TGCCGCATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * *
20576735 TTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGCA
169 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
20576800 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
20576865 ATTTGAGATTTTACAGGTCTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA-ACTTCTTTA
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20576929 AAATGGTCAC-AAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
364 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAA
* * ** * *
20576993 ATACAAGGATAACATCTAAAAAATTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATC
429 ATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATC
* * * * * * **
20577057 CCAAACCGTAAAAAGTTTTGAGAAAT-GTGAAAAATAGAAAACGAGTTGTCTTGCTGTGAAACTT
493 CCGAACCGTAAAATG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
20577121 CACGTGAAGGGTTAAGGGACCAATGTATGAATTTACCAGCCATAAAAATGGCAATGGCATGCAGA
557 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGA
* * *
20577186 AATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGATTACGCATCCCGTCTCT
622 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
20577251 CTGGCTGGCGTAATGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
687 CTGGCCGGCGT-A-G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
20577316 AGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATTGGCAGCATGTAG
748 AGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
** ** *
20577381 AGGGGGACCCGACCGATCCCCAACTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCCCCCGCAC
812 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
20577444 GCTCGTTTCGTGGGTTGACTTAGGCATACGGTGTTCAATCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--
* * * *
20577509 CCTAGTCTAAGATTGGATCGAACCGAGGCTTACGGCAACAAATGCTGGGCTCGGGCATGTGCTGG
57 -C----C---------A---AACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * *
20577574 TGCCGCATTTTTCTTCACTGGGGCACCATCACCAGAGCATCGCCAGAGAACCTGACCGGCGGCAT
105 TGCCGCATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
** * *
20577639 T-ACGATTCTGGTGATC-GGGGGGCTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
170 TGGGGTTTC-GGCGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
20577701 ACTTGGCCCTTATATTGGCCCCCCTACCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGA
233 ACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
20577766 GCATTTGGGATTTTACAGGTTTGCTTCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTT
297 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
20577831 TCAAATGGTCACAAAATCTTGTACACTTTTCG-GTTTTTAGGTGAATTGTTTTGTGCATGCCAAC
362 TCAAATGGTCACAAAATCTTGTACAC--TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAC
** * * *
20577895 AAAAATACAAGGATCTTGTCGACCAAGTTTGGAGCCAAAACACCTTCCG-AAAAAATTTAAAAAA
425 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAA
* * * * *
20577959 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAATCGAGTCGTCTTGCCATGAAAC
490 ATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
20578024 TTCACGTGAAGGCTTAAAGGACCGTTGTATTAATTTACAAGCCATAAAAATTGCATTGCCATGAA
555 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
20578089 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
620 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
20578154 CTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
685 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
20578215 TTTATTCCCAGTCAAAGAT-AGGACCAGACCTAGGGTTGTGGTAGCAGGATCGATAGCACGGAGA
750 TTCATT-CCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGA
** * * * * * *
20578279 GGGGGACCCGGTCGATTCTCAGCTTGCGAATCCCGCCCCCCTGGCCGGCTGAGCGCCCGCAC
813 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * ***
20578341 GTTCATTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA
* * *
20578406 GGGTT-CTGGCAGCACATGTTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCAT-CGGGGC
66 GGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGC
* * * * * * *
20578469 ACCATCGTCGGAGCATCGCCAGAGAACCTAACCGACGGCATTAGGGTTCCGGCAATCGGGGGGGC
129 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGC
* * * * *
20578534 CTAGGGTGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTA
194 C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* **
20578599 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTGTAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
20578664 CCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
20578729 GTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
388 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * ** * * * *** * * *
20578794 AT----CGAAAA-T-CAT--G--AAAAATAGAAAACGAGTCATCTTGCCATGAAA--CTTC----
453 TTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAA-AAATC-CCGAACCGTAAAATGTTTCAAAA
* *** * * * * * * *
20578843 A-CGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AATTTACAAGCCATAAAAATGGCATT--
516 ATCATGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTT-C-A--CGT--GAA-GGC-TTAA
* * ** * * * * * *** *
20578897 GGCA-CATAGAAATATGAAGATGTGGCAGAACC---CACATGCCA--CCCTAT-C-GATCCACG-
572 GGGACCATTG---TATG-A-AT-TTACA-AGCCATAAAAATGGCATTGCC-ATGCAGAAATATGA
* ** * * * ** ** ** *
20578953 -GCTTGTG-C-ATCCCGTCTCTCTGGACGA-CGTA--G-TGCC-C-GCCCGC-CCGCTTGTTTCG
629 AG-ATGTGCCTAAACC--CAC-CT--ACCACCCTATCGAT-CCACGGCTTGCGCATCCCGTCTC-
** * ** * **** * * * * * * *
20579008 TC-GGTTGGCTTAGGTATACAGAGTTCACTCCCAGTCTAAG-ATCAGACAGGACTGAGGGTT--G
686 TCTGGCCGGCGTA-GT-GCCCGCCCGCCCGCCC-G-CT-CGTTTC-GTC-GG--T-TGGCTTAGG
* * ** ** * ** *
20579069 CAGTAGCAGGA-TTGA---CAG-C-ACG--CAGAGGGGGACCTGACTGAT-CCCCAGCTTACGCA
741 CA-TA-C-GGAGTTCATTCCAGTCTAAGATCAGA-CCGGACC-GAGGGTTGCGGCAGC--A-GGA
* * * * ** * * * * *** ** ***
20579125 TC--CTGCCCCTCTG-GCCGG--CTGAGCG--CCCGCACGCTCGTTTAAT-GGGTTGACT-TAGG
798 TCGACAGCACGT-AGAGGGGGACCCGACCGATCCC-C-GGCTTG-CGCATCCCG-CCCCTCT-GG
*** * *
20579181 CATACGGAGTTCATTCCC-TA-
857 CCGGCTGAG--CA--CCCGCAC
* * * * * ** ** * ** * * * * * * *
20579201 TCTAAGCTTACG-GAGTTCA-TT-CCCAGT-CTAAGATCA-GACTAGACCGATGGTTGTGA-TAG
1 GCT-CG-TTTCGTGGGTTGACTTAGGC-GTACGGAGTTCATTCCCAG-TCTAAGATCG-GACCA-
* * * * ** * * * * ** * *
20579260 CACATGTTGGGCT-CGG--GCATGTGATGGTGC-C--GCATTTTTCTTCGTCGGGGCA----CCG
60 AAC-CG-AGGGTTGCGGCAGCACATGCTGG-GCTCGGGCA-TGTGC-TGGT-GCCGCATTTTTCT
* * * * * * * * * ** * *
20579315 TCACC--GG-AGCATCGTCGGAGAACCTGACCGACG-GCATTG-GGGTTCCGGCGATCGGAGG--
119 TCTCCGGGGCACCATCGCCGGAGCATC-GTCGGA-GAAC-CTGACCG--ACGGC-ATTGG-GGTT
* ****** * * * **
20579373 --GGC---CGGGGGGTG-TGCACACATGATGTGCA-ATG-GGTGCTGGTACTTGGCT-CTTATAC
177 TCGGCGATCGGGGGG-GCCGGGGGGGTG-TGCGCACATGATGTGC--G-A--TGGGTGCTGGTAC
** * *** *
20579429 -TGGCCCCCA-A-T--CCCTC-ATCAAACCTC-A------AGAACTCACACCCCCTTAAAGAGCA
235 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
20579481 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
300 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
20579546 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
365 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAA
* * * *
20579611 TACAAGGATCACGTCTACCAAGATTGGGG-CAAAACTCATTGC-AAAAAAATTTTAAAAAATCCC
430 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCCC
* * * * *
20579674 GAACCGCAAAAGGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCAC
495 GAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
20579739 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAAT
560 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAAT
** *
20579804 ATGAAGATGTAACTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTG
625 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
20579869 GCCGGCGTAGTGCCTGCCCGCCCGGCTTGTGCATCCTGTCCCCTCGTTTCATCAGTTGGCTTAGG
690 GCCGGCGTAGTGCCCGCCCG-CC--C----GC--CC-G----CTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** *
20579934 CATACAGAGTTCATTCCCAGTCTAAGATCATATCAGACCGAGGGTTACGATAGCAGGATC-AGTA
741 CATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CA
* * * *
20579998 GCACGTAGAGGGGGACCCGTCCGATCCCCGGCTTGTGCATCCCGCCCCTCCGGCCGGCTGAGCGC
804 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
*
20580063 CCGTAC
869 CCGCAC
*
20580069 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A--
*
20580134 CCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
57 --C---C--A-A----A-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
20580199 TGCCGCATTTTTCTTCGT-CGGGGCACCAT---C----C--C--CGGAGAACCTAACCGGCGGCA
105 TGCCGCATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * * * * *
20580252 TCGGGTTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGAACATGGTATGC-AGTGGGTACTAGT
169 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGT
*
20580316 TCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
20580381 CATTTTAGATTTTACAGGTTTGCTGCCAGTAACGCATTAAAAGTGTCTTGAAATGGGGACA-TTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATT-AAAGTGTC-TGAAATGGGGACACTTT
** * *
20580445 TTTCAAATGGTCTTAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
360 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAC
* * * * **
20580510 AAAAATACAAGGATAACCTCTACCAAGTTTGGGGCCAAAATTCCTTCTG-AAAAAATTTTGAAAA
425 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAA
* * * * *
20580574 ATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAAC
490 ATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
20580639 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
555 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
* * * * *
20580704 GAAATATGAAGATGTGCCAAAACCCACATACCACGCTATCGATACACGGCTTGCGCATCCCGTTT
620 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
20580769 CTCTGGCCGGCATAGT----GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGGATACAGAG
685 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
20580830 TTCATTCCCATTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
750 TTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAG
* * * *
20580895 GGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCTCCCGCAC
814 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
20580956 GCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGG----C---G-----T---A--C---G------GAGTTCATT
*
20581021 CCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
40 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** * * **
20581086 TGCCACATTTTTCTTCGCCAGGG-----T-G-C----CATCCCCGGAGAACCTAACCGGCAACAT
105 TGCCGCATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
** * * ***
20581140 TGGGGTTTCGAAGATC-GGGGGGCCAGTGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTAC
170 TGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
20581204 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGACAACTCACACTCTCTTAAAGAGCA
235 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
20581269 TTTGAGATTTTACAGGTTTGCTGCCAGTAACAATCAAAGTGTCTGAAATGGGGACACTTTTTTCA
300 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
20581334 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGT-TTTTCTGCATGCCAA-AAAA
365 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TCTTTTGTGCATGCCAACAAAA
* * * * *
20581397 AGTACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTTCG-AAAAAATTTTAAAAAATC
429 A-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATC
* * * * *
20581461 CTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTA
493 CCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * **
20581526 ACGTGAAGGCTTAAGGGGCCATTGTATGAATTTAGAAGCCATAACAATGGCATTGGCACACAGAA
558 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAA
* * * * *
20581591 AGATGAAAATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCAACCCGTCTCTC
623 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
20581656 TGGCCGACGCAGTGCCCGCCCGCTCGCCTGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACAGA
688 TGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
20581721 GTTCATTCCCAATCTAAGATCTGACCAGACTGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGA
749 GTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGA
* * * * * * * *
20581786 GAGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTAGTCGACTGAGCGCCCGCAC
813 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
20581848 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G------
*
20581913 CCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGC
56 ---A--C------C--A---AACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
20581978 TGCTGTATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCAT
105 TGCCGCATTTTTCTTCTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * * * *
20582043 TGGGG-TTCTGGTGATCGGGAGGGCC--GGGGGTGTCCGTACATGATTTGCGATGGGTGCTGCTA
170 TGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
20582105 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG-
20582170 CA--T--G-----ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
20582226 CAAATGGTCACAAAATCTTGTACAGTTCAAATTTTTAGCTGAAGTT-TTTTGTGCATGCCAACAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTCTTTTGTGCATGCCAACAA
* * * * *
20582290 AAAAACAAGGATCATGTATACCAAG-TTGGGGCCAAAACTCCTTTCG-AAAAAATTTCAAAAAAT
427 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAAT
* * *
20582353 CTCGAACCGTAAAAAT-TTTCAAAAATCATGAAAAATAGTAAACGAGTCGTCTTGCCTTGAAACT
492 CCCGAACCGT-AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * * *
20582417 TCACGTGACGGCTTAAGGGATCATTTTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAG
556 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAG
*
20582482 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
621 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
20582547 TCTGGCCGGCGTAGTGCACGCCCGTCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATGCG
686 TCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
20582612 GAGTTCATTCCCAGCCTAAGATCGGATCGCACCGAGGGTTCCGGTAGCAGGATCG-GAGCACGTA
747 GAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
* * * * * **
20582676 GAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCGTCCCTCTGGCCGACTGAGTGCCCGCAC
811 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
20582740 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCTGTTTCAGCATACGGATTTCATTC
1 GCTCGTTTCGTGGGTTGACTTAGG----C---G--TA---C-G-----G---A--G--TTCATTC
* * * * * *
20582805 CCAGTCTAAGATCGGATCAGACCAAGGGTTTCGACAGCACATGCTAGGCTCGGGCATGTGCTGGT
41 CCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
20582870 -CTCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGATCATCGTCGGAGAACCTGACCGGCGGCA
106 GC-CGCATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* ** * * * * *
20582933 TTGGGGTTCCAACGATCGGGGGGG-CTGGGGGGCGTGCGCACATGATGTACGATGGGCGTTGGTA
169 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
20582997 CTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* **
20583062 ATTTGAGATTTTACAGGTTTGCTTCCAGTAGCTGTTAAAGTGTCTGAAATGGGGACACTTTTTTC
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20583127 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
364 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAA
* * * * * *
20583192 ATACAAGGATCATGCG-C-ACCACGTTTGGAGCCAAAAATTCTTCTG-AAAAAATTAAAAAAAAT
429 ATACAAGGATCA--CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAAT
* * * * * *
20583254 CCCAAACCGCAAAAAT-TTTCGAAGATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACT
492 CCCGAACCG-TAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
20583318 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAA
556 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAG
*
20583383 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
621 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * ** * * *
20583448 TCTGGCCGGTGTGGTGCTTGCCCGCCCGCCCGCGCGTTTTGTCGGTTGGCTTAGCCATACGGAGT
686 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * * * *
20583513 TCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGTGGTAGCAGGATC-AGCAGCACGCAGAG
751 TCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAG
* * * * *
20583577 GGGGACCCGACCGATCCCAGGCTTGCGC-CCCCGCCCCTCTGGTCGGCTGAGCGCCCTCAC
814 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * * * *
20583637 GTTCGTTTCGTGGGTTCATTTAGGCATATGGAGTTCATTCCCAGTCCAAGCATACGAAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A--
* *
20583702 CCCAGTCTATGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGG
57 --C---C-A--A----A-C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * *
20583767 TGTCACTTTTTTCTT-TGTCGGGGCA-CATCGCTGGAGCATCGTCGGAGAACCTGACTGGCGGCA
105 TGCCGCATTTTTCTTCT-CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** *
20583830 TTAAGGTTTCGACGATCGGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
169 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
20583893 CTT-G-------A---G------ATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
20583941 ATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20584006 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-ACATGT-TTTTGTGCAAGCCAAAAA
364 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-AT-TCTTTTGTGCATGCCAACAA
* *
20584069 AAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAAT
427 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAAT
** * * *
20584133 CTTGAATCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACCG-GTCGTCTTGCCATGAAACT
492 CCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACT
* *
20584197 TCACGTGAAGGGTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACAT--
556 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CATGC
* * *
20584260 AGAAATATGAAGATGTGCCTAGACCGACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
619 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** *
20584325 TCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
684 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
20584390 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAACAACACGCAGA
749 GTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGA
** * * * * * **
20584455 GGGGGACTAGGCCGATCCCCGGCTTGCACGTCCCGCCCTTCTGGCCGGCTAAGTGCCCGCAC
813 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * * *
20584517 GCTCATTTCGTGTGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-A--TCG-G------
20584582 CCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
56 ----A-C------CA-A----ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
20584647 TGCCGCATTTTTCTTCGT-CAGGGCACCATCGCCGGAGCACCGCCGGAGAACCTGACC-AGCGGC
105 TGCCGCATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGC
* * ** ** *
20584710 TTTGGGGTTCCGAAGATC-GGGGGG-CTAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGT
168 ATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
20584773 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGCGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
20584838 CATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGGACACTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTT
* * *
20584903 TCAAAGTGGTCAC-AAATCTTGTACA-TTCGA-TTTTTAGCTTAATTTTTTTATGCAATGCCAAC
362 TCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGC-ATGCCAAC
** * **** * *
20584965 AAAAA-ACAAGGGATGCACGTCTACCAAGTTTGGGGTGAAAAGTAGAACTG--AAAAATTTTAAA
425 AAAAATACAA-GGAT-CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAA
* * *** *
20585027 ATATCCACCGGAATCGTAAAA-GTTTTGGAAATCGTGCAAAAAATAGAAAACGAGGTCGTCTTGC
488 AAAT-C-CC-GAACCGTAAAATGTTTCAAAAATCATG--AAAAATAGAAAACGA-GTCGTCTTG-
*
20585091 CCCATGAAACTTGCACCATGAAGGCTTAAGGGACACATTGTATGAATTTTA-AAGCCATAAAAAT
546 -CCATGAAACTT-CA-CGTGAAGGCTTAAGGGAC-CATTGTATGAA-TTTACAAGCCATAAAAAT
* ***
20585155 GGCATTGGCAAATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
606 GGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * **
20585220 TGCCCATCCCTTTTCTTTGGCCGGCGTAGTGCCCGCCCGTCCATCCGCTCGTTTCGTCGGTTGGC
671 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
20585285 TTAGTCATACGAAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC
736 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * ** * * * * * *
20585350 AATAGCACACAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCGTCTGGCCGGCTAA
800 GACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
20585415 GCACCCGCAC
865 GCACCCGCAC
* *
20585425 GCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGAC-T-----T----AG----------G-C---G--TACGGAGTTCATT
* * * * * * *
20585490 CCCAGTCTAAGATCGGACTAGACCGAGGGTTTCGACAGAACATGCTGGGCTCGAGCATGTGTTGG
40 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
20585555 TGCCACATTTTTCTT-TGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCCG-TGGC
105 TGCCGCATTTTTCTTCT-CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-CCGACGGC
* * * *
20585618 ATTGGGTTTTCGGTGATCGGGGGGGTCGAGGGGGCGGTGTGCGCACATGACGTGCGATGGGTGCT
168 ATTGGGGTTTCGGCGATCGGGGGGG-C-CGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
20585683 GGTACTTGTCCCTTATATTGGCCCCCTATCCTTCACCAAACCTCGAGAACTCACACCCCCTTAAA
230 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
20585748 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-ACCTT
295 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTT
* * *
20585812 TTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAA
359 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAA
* * * * *** *
20585877 CAGAAATACAAGGATCAGGTCTACCAAGTTTGGGACCAAAAATCCTT-CTTTAAAAATTTTAAAA
424 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAA
** * *
20585941 AATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
489 AATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * * **
20586006 CCTCACGTGAAGGTTTAAGGGACGATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACAC
554 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGC
20586071 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
619 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * **
20586136 TCTCTGGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCACCCACCCGCCCACTCGCTTAATCGGTT
684 TCTCTGGCCGGCGTAGTGCCCG----CCCGCCCG--------CCCG----CTCGTTTCGTCGGTT
* * * * * *
20586201 GGCTTAGTCATACGGAGTTCATTGCCAATCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGG
733 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * *
20586266 ATCGACAACACGCATAGGGGGACCCGACCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCCGGC
797 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
20586331 TGAGCGCCTGTAC
862 TGAGCACCCGCAC
* * *
20586344 GTTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCT------A---AG---A-T
* *** *
20586409 CCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGATGGCACATGCTGGGCTCGAGCATGTGCTGG
53 --C-G-----GA-C----CAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
20586474 TGCCGCATTTTTCTTCGT-TGGGGCACCATCGCCGAAGCATCG-CCGAGAACCTGACCGGCGTCA
105 TGCCGCATTTTTCTTC-TCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * * * * *
20586537 TTGGGGATCCGGTGATCGGAGGGG-CTGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGGTA
169 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
20586601 CTTTGCCCTTATATTGGCCCCCTATCACTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
20586666 ATTTGAGATTTTGCAGGTTTGCTTCTAGTAGCCGTTAAAGTGTCTGAAATGGGGATACTTTTTTC
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20586731 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCTGCATGCCAACAAA
364 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTCTTTTGTGCATGCCAACAAA
* **
20586796 AAAACAAGGATCACGTCTACCACA-TTTGGGGCCAAAACTCCTTTTG-AAAAAATTT-AAAAAAT
428 AATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAAT
* ** * *
20586858 CCCGAAACTC-AAAAAT-TTTTGAAAATCATGAAAAATACAAAACGAGTCGTCCTGCCATGAAAC
492 CCCG-AAC-CGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
20586921 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGAATTGGCATGCA
555 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
* * *
20586986 GAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGCCT
620 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
20587051 CTCTGGCCGGCGT-G-G--TGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
685 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * * * * * * *
20587112 TTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGTGGTAGCAGGACCGGCAACACGCAGAC
750 TTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAG
* * * * *
20587177 GGGGACCCGATCGATCCCCGACTTGCGCACCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC
814 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * **
20587238 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA
* * *
20587303 GGGTTGCGGCAGCACATGCTGCGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGG--
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCA
* ** **
20587365 -CA----C----CATCGTCGGAGAACCTGACCGACGGCATTAGGG-TTCTGATGATC-AAGGGGC
130 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGC
*** *
20587419 CGGGGGCGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTA
194 CGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * ** *
20587484 TCCCTCATCAAACCTTGAGAACTCACTCCCCCTCCAAGAGCATTTGAGATTTTATAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
20587549 TCAGTAGCCATTAAAGTGTCTAAAATGGGGAGAC-TTTTTGAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20587613 TTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
388 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
20587678 TTAGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
453 TTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAAT
* * * *
20587742 CGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
518 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
20587807 ATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATATAAAGATGTGCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
20587872 TACCACCC-ATCGATCCACGTCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * **
20587936 GCTCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGATTGGAC
713 G---CCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGAC
* ** * * * * *
20588001 CAGATTGAGGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTC
773 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * ** * *
20588066 GCGCATCGCGGCCTTTTGGCCTGCTGAGTGCCTGAAC
838 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * *
20588103 GCTCGTTCCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--
* *
20588168 TCCAGTCTAAGATCAGATCGAACCGAAGGTTACGGCACCACATGCTGGGCTCGGGCATGTGCTGG
57 --C---C-AA-A-C----CG-A--G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * ** *
20588233 TGCTGTATTTTTCTT-TGCCGGGGCACCATTGTC-GATGCATCACCGGAGAACCTGACCGACGAC
105 TGCCGCATTTTTCTTCT-CCGGGGCACCATCGCCGGA-GCATCGTCGGAGAACCTGACCGACGGC
* * * * *
20588296 ATTGGGGTTCCGGCGATCGGGGGGGCCGTGGGGGTATGCGCACATGATCTGTGATGGGTGCTGGT
168 ATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
20588361 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
20588426 CATTTGAGATTTTACAGGTTCGCCGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *** *
20588491 GAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATTTGAAAAAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAA
* *
20588556 AATACAAGGATCACATCTACCAAGTTT-GGG----------TTCCG-AAAAAATTTTAAAAAATC
428 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATC
* * * ** * *
20588609 CCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTC
493 CCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
20588674 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAACTGGCATTGGCACGCAGAA
558 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAA
* * * *
20588739 ATACGAAGATGTACCTAAACCCACCTACCACCCTATTGATGCACGGCTTGCGCATCCCGTCTCTC
623 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * ** ** *
20588804 TGACCAGCGTAGGGCTCGTCCATCCGCCCGTACGCTCGTTTCGTCGGTTGGCTTAGGCCCACAGA
688 TGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
20588869 GTTCATTCCCCA-TCTAAGATCATACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGTAG
749 GTTCATT--CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
* * * * ** *
20588933 AGGGGGACCC-AGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGGCGGCTGAGTGCCTGCAC
812 AGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
20588996 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAGGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG-AT--CG-G---A--
*
20589061 CCCAATCTAAGATCGGACCGGATCGAGGGTTTGCTGCAGCACATGCTGGGCTCGGGCATGTGCTG
57 --C---C--A-A----A-C----CGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * **
20589126 GTGCCACATTTTTCTT-TGAAGGGGCACCATCGTCGGAGCATCGTTAGAGAACCTGACC-AGCGG
104 GTGCCGCATTTTTCTTCT-CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGG
*
20589189 CATTGGGG-TTCTGACGAT---------C---GGGG-G-G-GC-C-----G-G-G--GGGTGCTG
167 CATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * *
20589228 GTACTTGGCTCATATATTGGCCCCTTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTCAAG
231 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
20589293 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTT
296 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
20589358 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAATGT-TTTTGTGCATACCAA
361 TTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAAT-TCTTTTGTGCATGCCAA
*
20589422 AAAAAATACAA
424 CAAAAATACAA
20589433 NNNNNNNNNN
Statistics
Matches: 12159, Mismatches: 1723, Indels: 1567
0.79 0.11 0.10
Matches are distributed among these distances:
840 171 0.01
843 4 0.00
844 1 0.00
845 1 0.00
846 7 0.00
847 24 0.00
848 18 0.00
849 7 0.00
850 12 0.00
851 25 0.00
852 39 0.00
853 50 0.00
854 32 0.00
855 28 0.00
856 32 0.00
857 172 0.01
858 288 0.02
859 187 0.02
860 28 0.00
861 30 0.00
862 32 0.00
863 16 0.00
864 17 0.00
865 197 0.02
866 33 0.00
867 25 0.00
868 77 0.01
869 185 0.02
870 64 0.01
871 171 0.01
872 159 0.01
873 152 0.01
874 12 0.00
875 534 0.04
876 117 0.01
877 23 0.00
878 10 0.00
879 505 0.04
880 147 0.01
881 95 0.01
882 15 0.00
883 155 0.01
884 336 0.03
885 20 0.00
886 136 0.01
887 265 0.02
888 20 0.00
889 18 0.00
890 12 0.00
891 179 0.01
892 599 0.05
893 836 0.07
894 541 0.04
895 34 0.00
896 51 0.00
897 407 0.03
898 236 0.02
899 321 0.03
900 201 0.02
901 397 0.03
902 546 0.04
903 630 0.05
904 157 0.01
905 467 0.04
906 69 0.01
907 28 0.00
908 389 0.03
909 143 0.01
910 140 0.01
911 24 0.00
912 57 0.00
913 199 0.02
914 403 0.03
915 82 0.01
916 4 0.00
917 20 0.00
918 37 0.00
919 227 0.02
920 1 0.00
921 1 0.00
928 1 0.00
929 1 0.00
930 1 0.00
931 2 0.00
933 1 0.00
934 23 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
GCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA
GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCAC
CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGA
GGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCACCCGCAC
Found at i:20576593 original size:26 final size:26
Alignment explanation
Indices: 20576564--20576616 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20576554 GTTGACTTAG
20576564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
20576590 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20576616 G
1 G
20576617 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20577505 original size:26 final size:26
Alignment explanation
Indices: 20577467--20577519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20577457 GTTGACTTAG
*
20577467 GCATACGGTGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
20577493 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20577519 G
1 G
20577520 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:20577637 original size:903 final size:896
Alignment explanation
Indices: 20573932--20578793 Score: 6040
Period size: 875 Copynumber: 5.5 Consensus size: 896
20573922 GTTGGCCTAG
* * ** *
20573932 GCATACGGAGTTTATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20573997 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT---C--A-C--CG--GAGAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAGAA
* * **
20574052 CCTGACAGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGATGGGGTGTGCGCACATGATGTGC
129 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
20574117 GATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20574182 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
20574247 GGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
* *
20574312 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGAT-ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * ** * *
20574377 TTTTAAAAAATCCTGAACTATAAAATGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
453 TTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
20574442 CCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTT---A--C------A----AT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
20574492 T-CCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCTTATCGATCCACGGCTTGGGC
583 TGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
20574556 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGG
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * ** *
20574621 CAAACAGAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTGCGGCAGTGGGATTGACAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * ** * *
20574686 AACGCATAGGGGGAGCCGACCGTTCCTCGAGTTATGCATCCCGCCCCTCTGGTCGGCTGAGCGCC
778 CACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* ** **
20574751 TGCACGCTCGGCTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTAA
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
20574805 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGATAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C-AACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20574870 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-GAGA
* * * * * * *
20574935 ACCTGACTGGCAGTATTGGGGTTTCGGTGATCAGGTGGGTCGGGGGGGTCGGGGGGGTGTGTGCA
128 ACCTGACCGACGGCATTGGGGTTTC---GA-C-----GATCGGGGGGGCCGGGGGGGTGTGCGCA
20575000 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
184 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
20575065 AGAACTCACACCCCATCAAAAAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGT
249 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
20575130 GTCTGATATGGGGACACTTTTTTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGA
314 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
20575195 ATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATTCCAAGTTTGAGGCCAAAACTCCT
379 ATTCTTTTGTGCATGCCAACAAAAATACAAGGAT-ACATCTACCAAGTTTGGGGCCAAAACTCCT
* *
20575260 TCCGAAAAAAAGTAAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAAC
443 TCC-AAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAAC
*
20575325 GAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
507 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
20575390 AAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCC
572 AAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
20575455 ACAGCTTGTGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCG
637 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * ** *
20575520 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGTTTAGATCGGATTGAGGGTTGCAGCAGC
702 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * * * *
20575584 AAGATCGGCAGCACATAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTC
767 AGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* *
20575649 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCCGTCTAA
832 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20575714 G-AT-C-G-G---------A--C------C--A-AACCGAGGGTTGTGGCAGCACATTCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
20575755 CGAGCATGTGCTGGTGCCGTATTTTTCTTCTCCAGGGCACCATCGCCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-GAGAAC
* * ** * *
20575820 CTGACCGACGGCACTGGGGTTTCGGCGATCAAGGGGGCCAGGGGGGGTGTGTGCACATAATGTGC
130 CTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGC
* *
20575885 AATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20575950 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20576015 GGGACACTTTTTTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
*
20576080 GCATGCCAACAAAAATACAAGGAT-CATGTATTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 GCATGCCAACAAAAATACAAGGATACATCTA--CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * *
20576144 AAGTAAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
20576209 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
20576274 ATTGGCACGCAAAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
20576339 GCATCCCGTCCCTCTGGCCAGCGTAATGCTCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
20576404 GGCATACAGAGTTCATTCCTAGTCAAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATCGAT
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* *
20576469 AGCACGTAGAGGGAGACCC-AGCTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
776 AGCACGTAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
20576533 ACCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
20576590 GCATGTGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCTGGACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
20576655 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCG-AGA
* ** *
20576720 ATCTGAGTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
128 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
20576785 TGATGGGTGTTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20576850 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
20576915 GGGGA-ACTTCTTTAAAATGGTCAC-AAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
** *
20576978 TGCATGCCAACAAAAATACAAGGATAACATCTAAAAAATTTTGGGGCCAAAACTCCTTCCAAAAA
388 TGCATGCCAACAAAAATACAAGGAT-ACATCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * * * *
20577043 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAGAAAT-GTGAAAAATAGAAAACGAGTTGTC
451 AATTTAAAAAAATCCCGAACCGTAAAATG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** * * *
20577107 TTGCTGTGAAACTTCACGTGAAGGGTTAAGGGACCAATGTATGAATTTACCAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
20577172 CAATGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGATTA
580 CATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
20577237 CGCATCCCGTCTCTCTGGCTGGCGTAATGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
20577302 GCTTAGGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * **
20577367 TTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAACTTGCGCATCTTGCCCCTCTGGCCGGCT
771 TCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
20577432 GAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGTGTTCAATCCCAGTCTAA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20577493 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGAACCGAGGCTTACGGCAACAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C-AACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20577558 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCAGAGCATCGCCAGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-GAGA
* ** * **
20577623 ACCTGACCGGCGGCATT-ACGATTCTGGTGATC-GGGGGGCTC-GGGGGGTGTGCGCACATGATG
128 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATG
* *
20577685 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTACCCCTCATCAAGCCTCGAGAACT
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
20577750 CACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTTCCAGTAGCCAATAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20577815 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTCG-GTTTTTAGGTGAATTG
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC--TTCGAGTTTTTAGCTGAATTC
* * * *
20577879 TTTTGTGCATGCCAACAAAAATACAAGGAT-CTTGTCGACCAAGTTTGGAGCCAAAACACCTTCC
383 TTTTGTGCATGCCAACAAAAATACAAGGATAC--ATCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
20577943 GAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAATCGAGT
446 AAAAAAATTTAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
20578008 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCGTTGTATTAATTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
20578073 ATTGCATTGCCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
576 ATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
20578138 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
641 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
20578199 GCTTAGGCATACGGAGTTTATTCCCAGTCAAAGAT-AGGACCAGACCTAGGGTTGTGGTAGCAGG
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGG
* * ** * * * *
20578263 ATCGATAGCACGGAGAGGGGGACCCGGTCGATTCTC-AGCTTGCGAATCCCGCCCCCCTGGCCGG
770 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
20578327 CTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
834 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20578390 G-AT-C-G-G---------A--C-----T-GG---ACCGAGGGTT-CTGGCAGCACATGTTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAACCGAGGGTTGC-GGCAGCACATGCTGGGC
* * * * *
20578430 TCGGGCATATGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-GAGAA
* * * * * * * *
20578495 CCTAACCGACGGCATTAGGGTTCCGGCAATCGGGGGGGCCTAGGGTGGTGTGCCCACATGATGTG
129 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTG
* *
20578560 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
20578625 ACCCCCTTAAAGAGCTTTTGAGATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20578690 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
*
20578755 TGTATGCCAACAAAAATACAAGGAT-CATGTCTACCAAGT
388 TGCATGCCAACAAAAATACAAGGATACA--TCTACCAAGT
20578794 ATCGAAAATC
Statistics
Matches: 3483, Mismatches: 405, Indels: 204
0.85 0.10 0.05
Matches are distributed among these distances:
870 4 0.00
871 154 0.04
872 137 0.04
873 152 0.04
874 10 0.00
875 523 0.15
876 147 0.04
877 3 0.00
878 1 0.00
879 3 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 106 0.03
884 25 0.01
886 1 0.00
887 2 0.00
888 2 0.00
889 1 0.00
891 1 0.00
893 272 0.08
894 110 0.03
895 1 0.00
896 5 0.00
897 190 0.05
899 253 0.07
900 49 0.01
901 155 0.04
902 173 0.05
903 419 0.12
904 30 0.01
905 226 0.06
906 47 0.01
907 4 0.00
908 2 0.00
909 140 0.04
910 130 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAGAACC
TGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGC
ATGCCAACAAAAATACAAGGATACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
AAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGC
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20579219 original size:26 final size:26
Alignment explanation
Indices: 20579183--20579232 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20579173 GACTTAGGCA
20579183 TACGGAGTTCATTCCCTA-TCTAAGCT
1 TACGGAGTTCATTCCC-AGTCTAAGCT
20579209 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20579233 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:20580121 original size:26 final size:26
Alignment explanation
Indices: 20580092--20580144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20580082 GTTGACTTAG
*
20580092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20580118 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20580144 G
1 G
20580145 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20581008 original size:26 final size:26
Alignment explanation
Indices: 20580979--20581031 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20580969 GTTGACTTAG
*
20580979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20581005 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20581031 G
1 G
20581032 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20581907 original size:26 final size:26
Alignment explanation
Indices: 20581871--20581923 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20581861 GTTGACTTAG
20581871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20581897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20581923 G
1 G
20581924 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20582633 original size:893 final size:894
Alignment explanation
Indices: 20578798--20589432 Score: 12193
Period size: 892 Copynumber: 11.9 Consensus size: 894
20578788 CCAAGTATCG
*
20578798 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
20578863 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGGC-AGAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA-AA
* * * * *
20578927 CCCACATGCCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGACGACGTAGT----G-
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
20578987 CC-CGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGTATACAGAGTTCACTCCCAGTCTAAGATC
195 CCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
20579051 AGA-CAGGACTGAGGGTTGCAGTAGCAGGATTGACAGCACGCAGAGGGGGACCTGA-CTGATCCC
260 TGACCA-GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCC
* * **
20579114 C-AGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTT
323 CGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
20579178 AGGCATACGGAGTTCATTCCCTA-TCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAGA-CT
387 AGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
* * ** * *
20579241 AGACCGATGGTTGTGATAGCACATGTTGGGCTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTC
451 A-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* ** * * *
20579306 GGGGCACCGTCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGA
515 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGG
* * * *
20579371 GGGGCCGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATACTGGCCCC
580 GGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
20579436 CAATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
644 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTG
20579501 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
703 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
20579566 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
768 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCA
* * * * * ** *
20579631 AGATTGGGG-CAAAACTCATTGCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCG
833 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
* *
20579692 AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * **
20579757 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATATGAAGATGTAACTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
20579822 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCC
* * *
20579887 CGCCCGGCTTGTGCATCCTGTCCC-CTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCC
192 CGCCC-GC----GC--CC-G-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
20579951 CAGTCTAAGATCAT-ATCAGACCGAGGGTTACGATAGCAGGATC-AGTAGCACGTAGAGGGGGAC
248 CAGTCTAAGATC-TGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGAC
* * * *
20580014 CCG-TCCGATCCCCGGCTTGTGCATCCCGCCCCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTC
311 CCGAT-CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
20580078 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
375 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
20580143 AGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
440 AGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
20580208 TTTCTTCGTCGGGGCACCA---TC----C--C--CGGAGAACCTAACCGGCGGCA-TCGGGTTTT
505 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT
* * * * * *
20580261 CGGCGATCGGGGGGGCCGGGGGGGTGTGCGAACATGGTATGC-AGTGGGTACTAGTTCTTGGCCC
570 -GGCGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCC
20580325 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGA
631 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA--TTAG-
*
20580390 TTTTACAGGTTTGCTGCCAGTAACGCATTAAAAGTGTCTTGAAATGGGGACA-TTTTTTCAAATG
693 ---TACAGGTTTGCTGCCAGTAGC-CATT-AAAGTGTC-TGAAATGGGGACACTTTTTTCAAATG
**
20580454 GTCTTAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATAC
752 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-AC
* * * * * *
20580518 AAGGATAACCTCTACCAAGTTTGGGGCCAAAATTCC-TTCTGAAAAAATTTTGAAAAATCTCAAA
816 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAA
*
20580582 CCGTAAAAAGTTTCA
880 CCGTAAAAATTTTCA
* *
20580597 AAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
20580662 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCAAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
20580727 CCACATACCACGCTATCGATACACGGCTTGCGCATCCCGTTTCTCTGGCCGGCATAGT----G-C
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
20580787 C-CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGGATACAGAGTTCATTCCCATTCTAAGATCG
196 CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT
* * * ** *
20580851 GACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGG
261 GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGA
* * *
20580916 CTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCTCCCGCACGCTAGTTTCGTGGGTTGACTTAGGC
326 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
20580981 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCG
391 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCG
* * *
20581046 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGG--
456 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * ** **
20581109 ---T-G-C----CATCCCCGGAGAACCTAACCGGCAACATTGGGGTT-TCGAAGATC-GGGGGGC
521 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGC
***
20581163 CAGTGGGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
585 C-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
20581228 CCCTCATCAAAGCTCGACAACTCACACTCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
648 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTGCTGC
* * *
20581293 CAGTAACAATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
707 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
20581358 TCAAGTTTTTAGCTGAATGTTTTTCTGCATGCCAA-AAAAAGTACGAGGATCATGTCTACCAAGT
772 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-AACAAGGATCACGTCTACCAAGT
* * *
20581422 TTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTT-A
836 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCA
* *
20581481 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGGCC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
20581546 ATTGTATGAATTTAGAAGCCATAACAATGGCATTGGCACACAGAAAGATGAAAATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
20581611 TCACCTACCACCCTATCGATCCACAGCTTGCGCAACCCGTCTCTCTGGCCGACGCAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
20581676 CGCTCGCCTGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGAT
196 CG--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
20581741 CTGACCAGACTGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGAGAGGGACCCGATCGATCCCC
259 CTGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * *
20581806 GACTTACGCATCCCGCCCCTCTAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
324 GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
20581871 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
389 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
* * * *
20581936 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCTGTATTTTTCTTCGCCGGGG
454 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
20582001 CACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGAGGG
519 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGG
* * * *
20582066 CCGGGGGTGTCCGTACATGATTTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATC
584 CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
20582131 CCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCCA-T-G-ACAGGTTTGCTGCCAGTAG
649 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG-CATTAGTACAGGTTTGCTGCCAGTAG
* * *
20582193 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAAT
713 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
20582258 TTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTATACCAAG-TTGGGGC
778 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGC
* *
20582322 CAAAACTCCTTTCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAATTTTCA
843 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
* * * *
20582374 AAAATCATGAAAAATAGTAAACGAGTCGTCTTGCCTTGAAACTTCACGTGACGGCTTAAGGGATC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
20582439 ATTTTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTACCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
20582504 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
20582569 CGTCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGCCTAAGAT
196 CG-C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
20582634 CGGATC-GCACCGAGGGTTCCGGTAGCAGGATCG-GAGCACGTAGAGGGGGACCCGATCGATCCT
259 CTGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCC
* * * *
20582697 CGACTTGCGCATCCCGTCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
323 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
20582762 GGCATACGGAGTTTATT-CCTGTTTCAGCATACGGATTTCATTCCCAGTCTAAGATCGGATC-AG
388 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-
* * * *
20582825 ACCAAGGGTTTCGACAGCACATGCTAGGCTCGGGCATGTGCTGGT-CTCGCATTTTTCTTCGTCG
452 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCGTCG
* ***
20582889 GGGCACCATCGTCGGATCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGG
516 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGG
* * * * * *
20582954 GGGCTGGGGGGCGTGCGCACATGATGTACGATGGGCGTTGGTACTTGGCCCTTATATTGGCCCCA
581 GGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
20583019 TATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
645 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTGC
* **
20583084 TTCCAGTAGCTGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
704 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
20583149 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCG-C-ACC
769 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCA--CGTCTACC
* * * * ** * * *
20583212 ACGTTTGGAGCCAAAAATTC-TTCTGAAAAAATTAAAAAAAATCCCAAACCGCAAAAATTTTCG
832 AAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
* * *
20583275 AAGATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
20583340 ATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * **
20583405 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTGGTGCTTG-C
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
20583469 C-CGCCCGCCCGCGCGTTTTGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAATCTAAGAT-T
196 CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT
* * * * *
20583532 GGATCAGACTGAGGGTTGTGGTAGCAGGATC-AGCAGCACGCAGAGGGGGACCCGACCGATCCCA
261 -GACCAGACCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * * *
20583596 GGCTTGCGC-CCCCGCCCCTCTGGTCGGCTGAGCGCCCTCACGTTCGTTTCGTGGGTTCATTTAG
324 GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
20583660 GCATATGGAGTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTATGATCGGACCGGAT
389 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
* * * * * *
20583725 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTTGTCGGGG
454 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** *
20583790 CA-CATCG-CTGGAGCATCGTCGGAGAACCTGACTGGCGGCATTAAGGTT-TCGACGATCGGGGG
519 CACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGG
*
20583852 GGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-G-------A---G------A
582 GGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
20583900 TTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTG
647 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT---A--GTACAGGTTTGCTG
*
20583965 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
706 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
20584030 TTCGAGTTTTTAGCT-ACATGTTTTTGTGCAAGCCAA-AAAAAATAAAAGGATCACGTCTACCAA
771 TTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAA
* ** * *
20584093 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCGTAAAAAGTTTCA
834 GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
* *
20584154 AAAATCCTGAAAAATAGAAAACCG-GTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGAC
1 AAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* ** *
20584218 CATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAGA
65 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * *
20584283 CCGACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
** *
20584347 CC-CGCCCATCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
195 CCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** **
20584411 AGACCGGACCGAGGGTTGCGGTAGCAGGATCAACAACACGCAGAGGGGGACTAGGCCGATCCCCG
260 TGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * * * * * *
20584476 GCTTGCACGTCCCGCCCTTCTGGCCGGCTAAGTGCCCGCACGCTCATTTCGTGTGTTGACTTAGG
325 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* ** * * *
20584541 CATATGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTCCCAATCTAAGATCAGATCGGACC
390 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACC
*
20584606 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGC
455 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * **
20584671 ACCATCGCCGGAGCACCGCCGGAGAACCTGACCAGCGGCTTTGGGGTTCCGAAGATC-GGGGGGC
520 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGC
* *
20584735 TAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
585 -CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
20584800 CCTCATCAAACCTTGCGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCC
649 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT-T-AG----TACAGGTTTGCTGCC
*
20584865 AGTAGCCATTAAAGTGTCTCAAATGGGGGACACTTTTTTCAAAGTGGTCAC-AAATCTTGTACA-
708 AGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACAC
* *
20584928 TTCGA-TTTTTAGCTTAATTTTTTTATGCAATGCCAAC-AAAAAACAAGGGATGCACGTCTACCA
771 TTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAAAACAA-GGAT-CACGTCTACCA
** * **** * * *
20584991 AGTTTGGGGTGAAAAGT-AGAACTG-AAAAATTTTAAAATATCCACCGGAATCGTAAAAGTTTT-
833 AGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAAT-C-CC-GAACCGTAAAAATTTTC
*
20585053 G
894 A
* * *
20585054 GAAATCGTGCAAAAAATAGAAAACGAGGTCGTCTTGCCCCATGAAACTTGCACCATGAAGGCTTA
1 AAAATCATG--AAAAATAGAAAACGA-GTCGTCTTG--CCATGAAACTT-CA-CGTGAAGGCTTA
***
20585119 AGGGACACATTGTATGAATTTTA-AAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGATG
59 AGGGAC-CATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * *
20585183 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCTTTTCTTTGGCCGGCGTA
122 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* ** * * *
20585248 GTGCCCG-CC-CGTCCATCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTGCCAGT
187 GTGCCCGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
20585311 CTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAATAGCACACAAAGGGGGACCCGATC
252 CTAAGATCTGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC
* * * * * *
20585376 GATCCCC-AGCTTGCGCATCCCACCCGTCTGGCCGGCTAAGCACCCGCACGCTCATTTTGTGGGT
317 GATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
20585440 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
381 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
20585505 GA-CTAGACCGAGGGTTTCGACAGAACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCT
446 GATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * * *
20585569 TTGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCCGTGGCATT-GGGTTTTCGGTG
510 TCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCG
* * *
20585633 ATCGGGGGGGTCGAGGGGGCGGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTGTCCCTTA
574 ATCGGGGGGG-C---CGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
20585698 TATTGGCCCCCTATCCTTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
634 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----
20585763 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-ACCTTTTTTCAAATGGTCAC
693 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCAC
* * * *
20585827 AAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAGAAATACAAGGAT
757 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGAT
* * * ** **
20585892 CAGGTCTACCAAGTTTGGGACCAAAAATCC-TTCTTTAAAAATTTTAAAAAATCCCGAACCACAA
822 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAA
*
20585956 AAAGTTTCA
886 AAATTTTCA
* * * *
20585965 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGTTTAAGGGACG
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
20586030 ATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
20586095 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--
* * ** * *
20586160 CACCCGCCCGCCCACCCACCCGCCCACTCGCTTAATCGGTTGGCTTAGTCATACGGAGTTCATTG
194 --CCCG--CG--------CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * *
20586225 CCAATCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGATCGACAACACGCATAGGGGGACC
247 CCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * * *
20586290 CGACCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGTTCGTTTCGT
312 CGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
20586355 GGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAG
377 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** *** *
20586420 ATCAAATC-AGACCGAGGGTTGCGATGGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
442 ATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * *
20586484 TTCTTCGTTGGGGCACCATCGCCGAAGCATCG-CCGAGAACCTGACCGGCGTCATTGGGGATCCG
506 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTG
* * * * * *
20586548 GTGATCGGAGGGGCTGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGGTACTTTGCCCTTAT
571 GCGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
20586613 ATTGGCCCCCTATCACTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
635 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----T
* * * * *
20586678 GCAGGTTTGCTTCTAGTAGCCGTTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAA
694 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
20586743 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCTGCATGCCAACAAAAAAACAAGGATC
759 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAAAACAAGGATC
* *
20586808 ACGTCTACCACA-TTTGGGGCCAAAACTCCTTTTGAAAAAA-TTTAAAAAATCCCGAAAC-TCAA
823 ACGTCTACCA-AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AA
**
20586870 AAATTTTTG
886 AAATTTTCA
* *
20586879 AAAATCATGAAAAATACAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
20586944 ATTGTATGAATTTACAAGCCTTAAAAATGGAATTGGCATGCAGAAATATTAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
20587009 CCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGCCTCTCTGGCCGGCGT-G-G--TG-C
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
20587069 C-CACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-T
196 CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT
* * * * * * * *
20587132 GGATCGGACCAAGGGTTGTGGTAGCAGGACCGGCAACACGCAGACGGGGACCCGATCGATCCCCG
261 -GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* *
20587197 ACTTGCGCACCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
325 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
20587262 CATACGGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GA-C----CGGACC
390 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACC
* * *
20587301 GAGGGTTGCGGCAGCACATGCTGCGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG-
455 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** **
20587365 --CA----C----CATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCTGATGATC-AAGGGGC
520 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGC
*** *
20587419 CGGGGGCGGTGTGCGCACATGATGCATGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTA
585 C--GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * ** *
20587484 TCCCTCATCAAACCTTGAGAACTCACTCCCCCTCCAAGAGCATTTGAGATTTTATAGGTTTGCTG
647 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTGCTG
* * * *
20587549 TCAGTAGCCATTAAAGTGTCTAAAATGGGGAGAC-TTTTTGAAATGGTCACAAAATCTTGTACAC
706 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20587613 TTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
771 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGT
* * *
20587678 TTAGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
836 TTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
* * * *
20587737 AAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
20587802 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATATAAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * *
20587867 CCACCTACCACCC-ATCGATCCACGTCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
20587931 CGCCCGCTCC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGA
196 CG--CGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
20587995 T-TGGACCAGATTGAGGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCC
258 TCT-GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCC
* * * * * * * * * *
20588059 CCGACTCGCGCATCGCGGCCTTTTGGCCTGCTGAGTGCCTGAACGCTCGTTCCGTGGGTTGACTT
322 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
20588124 AGTCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGA
387 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA
* * * * * * *
20588189 ACCGAAGGTTACGGCACCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTTGCCGG
452 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* ** * * *
20588254 GGCACCATTGTC-GATGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGG
517 GGCACCATCGTCGGA-GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGG
* * *
20588318 GGGCCGTGGGGGTATGCGCACATGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
581 GGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
20588383 CTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCG
644 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTG
* * * *
20588448 CCGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTGAAATGGTCACAAAATCTTGTA
703 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *** *
20588513 CACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATTTGAA-AAAAAATACAAGGATCACATCTACC
768 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACGTCTACC
* * * *
20588577 AAGTTT-GGG----------TTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTT-G
832 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCA
* *
20588629 AAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
20588694 ATTGTATGAATTTACAAGTCATAAAACTGGCATTGGCACGCAGAAATACGAAGATGTACCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
20588759 CCACCTACCACCCTATTGATGCACGGCTTGCGCATCCCGTCTCTCTGACCAGCGTAGGGCTCGTC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C
** ** *
20588824 CATC-CGCCCGTACGCTCGTTTCGTCGGTTGGCTTAGGCCCACAGAGTTCATTCCCCA-TCTAAG
195 C--CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAG
* * * * *
20588887 ATCAT-ACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGGGGGACCC-AGTCGAT
257 ATC-TGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGAT
* * * *
20588950 CCCCGACTTGCGCATCCCGCCCCTTTGGGCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGAC
320 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
20589015 TTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAATCTAAGATCGGACC
385 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * * *
20589080 GGATCGAGGGTTTGCTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGA
450 GAACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* ** * *
20589145 AGGGGCACCATCGTCGGAGCATCGTTAGAGAACCTGACCAGCGGCATTGGGGTTCTGACGAT---
514 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGG
* *
20589207 ------C-GGGG-G-G-GC-C-----G-G-G--GGGTGCTGGTACTTGGCTCATATATTGGCCCC
579 GGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
20589252 TTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTG
644 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT-AG----TACAGGTTTG
*
20589317 CTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
703 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
20589382 CACTTCGAGTTTTTTAGCTGAATGTTTTTGTGCATACCAA-AAAAAATACAA
768 CACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAA
20589433 NNNNNNNNNN
Statistics
Matches: 8440, Mismatches: 1019, Indels: 588
0.84 0.10 0.06
Matches are distributed among these distances:
856 3 0.00
857 111 0.01
858 238 0.03
859 139 0.02
861 2 0.00
862 2 0.00
865 179 0.02
866 2 0.00
867 1 0.00
868 60 0.01
869 159 0.02
870 37 0.00
871 3 0.00
872 2 0.00
873 2 0.00
874 2 0.00
877 5 0.00
878 9 0.00
879 494 0.06
880 173 0.02
881 84 0.01
882 9 0.00
883 15 0.00
884 304 0.04
885 17 0.00
886 127 0.02
887 309 0.04
888 12 0.00
889 4 0.00
890 4 0.00
891 219 0.03
892 654 0.08
893 564 0.07
894 584 0.07
895 11 0.00
896 43 0.01
897 218 0.03
898 249 0.03
899 59 0.01
900 153 0.02
901 274 0.03
902 409 0.05
903 273 0.03
904 124 0.01
905 240 0.03
906 12 0.00
907 22 0.00
908 448 0.05
909 27 0.00
910 13 0.00
911 24 0.00
912 326 0.04
913 177 0.02
914 414 0.05
915 64 0.01
916 3 0.00
917 1 0.00
918 32 0.00
919 293 0.03
920 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT
GACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGA
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTAGTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCA
Found at i:20584576 original size:26 final size:26
Alignment explanation
Indices: 20584540--20584592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20584530 GTTGACTTAG
*
20584540 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
20584566 GCATGTGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
20584592 G
1 G
20584593 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:20585484 original size:26 final size:26
Alignment explanation
Indices: 20585448--20585500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20585438 GTTGACTTAG
20585448 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20585474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20585500 G
1 G
20585501 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20586170 original size:12 final size:12
Alignment explanation
Indices: 20586153--20586186 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
20586143 CCAGCGTAGT
20586153 GCCCGCCCACCC
1 GCCCGCCCACCC
20586165 GCCCGCCCACCC
1 GCCCGCCCACCC
*
20586177 ACCCGCCCAC
1 GCCCGCCCAC
20586187 TCGCTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.12, C:0.74, G:0.15, T:0.00
Consensus pattern (12 bp):
GCCCGCCCACCC
Found at i:20586177 original size:16 final size:16
Alignment explanation
Indices: 20586153--20586184 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20586143 CCAGCGTAGT
*
20586153 GCCCGCCCACCCGCCC
1 GCCCACCCACCCGCCC
20586169 GCCCACCCACCCGCCC
1 GCCCACCCACCCGCCC
20586185 ACTCGCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.75, G:0.16, T:0.00
Consensus pattern (16 bp):
GCCCACCCACCCGCCC
Found at i:20588156 original size:26 final size:26
Alignment explanation
Indices: 20588127--20588178 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20588117 TTGACTTAGT
20588127 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
* *
20588153 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
20588179 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:20589048 original size:26 final size:26
Alignment explanation
Indices: 20589019--20589071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20589009 GTTGACTTAG
* *
20589019 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20589045 GCATAGGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20589071 G
1 G
20589072 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20591518 original size:26 final size:26
Alignment explanation
Indices: 20591482--20591580 Score: 155
Period size: 26 Copynumber: 3.8 Consensus size: 26
20591472 ATCTTAACTG
*
20591482 GGAATGAACTCTGTATGCCTAGACTA
1 GGAATGAACTCCGTATGCCTAGACTA
*
20591508 GGAATGAACTCCGTATGCCTAGACTG
1 GGAATGAACTCCGTATGCCTAGACTA
*
20591534 GGAATGAACTCCGTATGGCTAGACTCA
1 GGAATGAACTCCGTATGCCTAGACT-A
20591561 -GAATGAACTCCGTATGCCTA
1 GGAATGAACTCCGTATGCCTA
20591581 AGTCAACCCA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCCTAGACTA
Found at i:20591556 original size:52 final size:52
Alignment explanation
Indices: 20591478--20591580 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
20591468 CCCGATCTTA
*
20591478 ACTGGGAATGAACTCTGTATGCCTAGACT-AGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATGCCTAGACTCA-GAATGAACTCCGTATGCCTAG
*
20591530 ACTGGGAATGAACTCCGTATGGCTAGACTCAGAATGAACTCCGTATGCCTA
1 ACTGGGAATGAACTCCGTATGCCTAGACTCAGAATGAACTCCGTATGCCTA
20591581 AGTCAACCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 47 0.98
53 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (52 bp):
ACTGGGAATGAACTCCGTATGCCTAGACTCAGAATGAACTCCGTATGCCTAG
Found at i:20592403 original size:26 final size:26
Alignment explanation
Indices: 20592374--20592429 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20592364 CCAGTCCGAT
*
20592374 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20592400 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20592426 CTTA
1 CTTA
20592430 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20593298 original size:26 final size:26
Alignment explanation
Indices: 20593259--20593311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20593249 CTAGTTTGAT
* *
20593259 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
20593285 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
20593311 C
1 C
20593312 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:20594613 original size:893 final size:892
Alignment explanation
Indices: 20591975--20623190 Score: 27164
Period size: 896 Copynumber: 35.0 Consensus size: 892
20591965 TTTCAAAACT
* ** * *
20591975 TTTTGGCCCGAAACTTTTTAGACGTGATCCTTGTATTGTTGTTGGCATGCACTAAACAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCAC-AAAAAATTCAGC
20592040 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
20592105 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGG-GTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20592169 TTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
20592234 ACACCCCCCGGCCCCCCGACCGCCGGAACCCCAATGCCGCCGATCAGGTTCT-C--C-A-G---C
259 ACACCCCCCGG--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * * *
20592291 ---GATGGTGCCTCGATGAAG-AAAATGTGGCACCAGCACATG-CTCGAACCCAACATGGGCTGC
322 GGTGATGGTGCCT-GACGAAGAAAAATGCGACACCAGCACATGCCT-GAGCCCAGCATGTGCTGC
*
20592351 CGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * ** ** *
20592416 ACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGGGGGCTTTCAGCCGGCCAGAGTAGCGGG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * ** **
20592481 ATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGTTGTCGATCCTGCTACCGCAACCCTC
515 ATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTC
* * * *
20592546 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
579 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
20592611 GCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAG-TCGTGGATCGATAGGATG
644 GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTG
* *
20592675 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTG-CGATGCCATTTTTATGGCTTGTAAATT
708 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
20592739 CATACACTGGTCCCTTAGGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTC
773 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * *
20592804 ATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
838 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
***** *
20592859 TTTTCATGTCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGGT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAATTCAGCT
* *
20592924 AAAAACTCGAAGTGTGCAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
20592989 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGAGTGAGTTCTCAAAGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20593053 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
20593118 CACCCCCCGGCCCCCTCGATCACCGGAACCCCAATACCGCCGGTCAGG---T-------T-CTCC
260 CACCCCCCGG--CCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * *
20593172 GGTGATGGTGCCCCGACGAAGAAAATTGCGGA-ACCAGAACATGCCTGAGCCCAGCATGTGCTGC
322 GGTGATGGTG-CCTGACGAAGAAAAATGC-GACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
* * ** * * *
20593236 TGCAACCCTCGGTCTAGTTTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGCGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
20593301 ACTCCATATGCCTAAGTCAACCC-TAGAAACGAGCGTGTGGGCGCTCAACCGGCTATAGGGGC-G
450 ACTCCGTATGCCTAAGTCAACCCAT-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * ** *
20593364 AGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTATCGCAACCC
514 -GATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCC
* * *
20593429 TTGGTCC-AGTCCGATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAACGA
577 TCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGA
** * *
20593493 GCTAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGG
640 GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
* * *
20593558 GTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
20593623 ATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACAACTCGTTTTCTATTT
770 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * ** ** ** *
20593688 TTGAGGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCTTAAGTAG
835 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * *
20593746 TTTTAGCTCCAAACTTGGTAGACGTGACCCTTGTATTTTTTTTGCATGCACAAAAAGATTCAACT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAA-ATTCAGCT
*
20593811 AAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
20593876 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
**
20593941 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
20594006 CACCCCCCGG-CCGGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGT
260 CACCCCCCGGCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGT
* * *
20594070 GATGGTGGCGTGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCA
325 GATGGT-GCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
* * * * ** * * **
20594135 TCCTTTGGTCCGGTGTGATCTTAGACTGGTAACGAACTTTGTATGCTTAGACTGGGAATGAACTC
389 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * ** * * *
20594200 CGTACGCCTAAGTCAACGCATGAAATGAGCAAGCGGGCACTC-GATCGGCCAGAGGGGTAGGATG
454 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCAGGATG
* * * * * * * *
20594264 CACAAACCGGGATCGGTCGGGTCCCCCTCTATGTACTATCGATTCTG-TCGTCGTAACCCTCGAT
518 CGCAAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCT-GTCGCAACCCTCGGT
* * * * *
20594328 CTGATCCGGTCGTACACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
582 CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
** ** *
20594393 ACCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
647 GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
* * *
20594458 GTGGGTTTAGGCACATCTTCATATTTCTGCCTACCAATGCCATTTTTATGGCTTGTAAATTCATG
712 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
20594523 CAATGGTCCCTTAAGCCTTTACGTAAAGTTTCATGGCAAGACGGCTCATTTTCTATTTTTCACGA
777 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * *
20594588 TTTTTTAAACCTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGG-G
842 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20594638 TTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAAC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA-ATTCAGC
*
20594703 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20594768 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* **
20594833 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTACACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
20594898 ACACCCCCCAG--CCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGA
259 ACACCCCCCGGCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG
* ** * * *
20594961 TGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
324 TGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
* * *
20595026 AAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
388 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
20595091 CTGTATGCCTAAGTCAACCCACT-AAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGAT
453 CCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * * **
20595155 GCGGAAGCCAAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCTATCCTAATG-CTGCAACCCTCG
517 GCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTC-GCAACCCTCG
* * * * *
20595219 GTCGGAT-CAATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAACCGACGAAACAAGCGGG
580 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
20595283 CGGGCGGGCGAGCACTACACCGGCCTGAGAGACGGGATGCGCAAGCTGTGGATCAATAGGGTGGT
645 CGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
* *
20595348 AGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTGAATTCA
710 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
20595413 TACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAT
775 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
** * ** *
20595478 GA-TTTCAAAACTTATTGGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGG
840 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * **
20595530 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTACTTTTGTTGGTGTGCACAAAAAATATTCAG
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAA-ATTCAG
* *
20595595 TTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
63 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
20595660 TAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
128 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
20595725 GTTTGATGAGGGATAGAGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATTTACG
193 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
20595790 TACACCCCCCCGATCGTCGGAACCCCAATGCCGCCAGAACCCCAATACCGTCGGTCAGGTTCTCC
258 --CA-CACCCC---C--CGG--CCCCGAT--CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
20595855 GACGATGCTCCGGTGATGGTGCCTCACGAAGAAAAATGTGAAACCAGCACATGCCCGAGCCCAGC
311 GACGATGCTCCGGTGATGGTGCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
*
20595920 ATGTGCTGCCGC-A---TC---CC--T-CG--GTT----T--G---G---TCCG-AT-CTTAGAC
376 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
20595959 TGGGAATGAACTTCGTATGCCTAAGTCAAACCATGAAATGAGCATGCGGGCGCTCAACCGGCCAA
441 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** *
20596024 AGGGGC-GGTATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTATATGCTACCGATCCTGCTGC
506 AGGGGCAGG-ATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGT
* * * *
20596088 CACAGCCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG
569 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
20596153 AAA-TA-------AGCGGGCGGGCACTATACCGACCAGAGAGATGGGGTGCGCAAGCTGTGGATC
634 AAACGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
* * *
20596210 GATAGGTTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
699 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * * *
20596275 TTGTAAATTCATACGATGGTCCCTTAAGCATTCACGTGAAGTTTCACGGTAAGACGACT-AGTTT
764 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA-TTT
* * * * *
20596339 TCTATTTTTCACGATTTTGGAAACTTTTTAAGGTTTGGGATTTTTAAAAATTTTTTAGGAAGGAG
828 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * *
20596404 TTTTGGCCCCAAACTTGGAAGACATAATCCATGCT-TTTTTTTGGCATGCATAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTTTGGCATGCA-CAAAAAATTCAGC
* * *
20596468 TAAAAACTCGATGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTC
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
20596533 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20596598 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATTTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
20596663 GCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
259 ACA-CCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* ** *
20596728 CCAGTGATGGTGCCTCGGTGAAGAAAAATGCGGAC-CCAGCACATG-CTCGAGCCCAGTATGTGC
320 CCGGTGATGGTGCCT-GACGAAGAAAAATGC-GACACCAGCACATGCCT-GAGCCCAGCATGTGC
* * * * * * * * *
20596791 TGTCGTAACCCTCAGTCCAATCCGATCTTAGACCGGGAATGAACTTCGTACGTTTACACTGGGAA
382 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
** * *
20596856 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGC
447 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** *
20596921 GGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCAATCCTGCTGTCGCAA-C
512 AGGATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACC
* * * * * *
20596985 CTCCGGTTCGATCTGATCTTAGACTAGGATTTATCTCCGTATGCCTCAA-CCAACCGACGAAACG
576 CT-CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACG
* * * * * * * *
20597049 AGTGGGCGGCCGGGCGACCGTGCACTACACCCGCAAGAAAGACAGGAGGCGCAAGCCGTGGATCG
639 AGCGGGCGGGCGGGCG---G-GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCG
** **
20597114 ATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCT-ATTAGCCAATGCCATTTTTATGGC
700 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT-GCCAATGCCATTTTTATGGC
* * * **
20597178 TTGTAAATTCATACAATGGTCCCTTAAGCCTTGGATCGAT-AGGGTGGT-AGGTTGGTTTAG--G
764 TTGTAAATTCATACAATGGTCCCTTAAGCCTT-CA-CG-TGA-AGT-TTCA---TGG-CAAGACG
* * * * **** ** * ** * ** * **
20597239 -CACATCTTC-ATATTTCTATGAGCCAATGCCA-TTTTTATGGCTT-GTAAATTCATACAA-TGG
820 ACTCATTTTCTATTTTTC-ACGA-TTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTT
* ***
20597299 TCCCTTA--AG
882 TTCGGAAGGAG
** ** *** ** ** * * * * * * ** *** *
20597308 CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTC-AAAACTT--
1 TTTTGGCCCCAAACTTGGTAG-ACG-TGA-TCCTTGTATTTTTTTGGC-ATGCACAAAAAATTCA
** * ** * ** * * ** * *
20597370 TTTACGATTCTGGATTTTTTA-AA-ATTTT-T-----TCT-AAAGGAGTTTTGGCCC----CA-A
62 GCTA-AAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGT-CCCCATTTCAGA
* * ***** * *** * * ** * *
20597421 -ACTTGGTAGATGTGATCCTTGG-A--TTTTTTTTGGGATGCACAAA-AC-AATTCA----G-CT
123 CACTT--TA-ATG-GCTAC-TGGCAGCAAACCTGTAAAAT-CTCAAATGCTCTTTAAGGGGGTGT
* *** * * * * ** * * * * * *
20597475 AAAAACACGAAGTTT-A-CA-AGATTTTGTGACC-ATTTGAA-----AA--AACTGTC-CCCATT
182 GAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATAT-AAGGGCCAAGTACCAG-CACCCATC
* * * *** * *** *** * * *
20597528 TCA-ATCACTTTAATG-GC-TA-CTGACAG--TAAATCTG-TAAAATCTCAAATGCTCTTTAAGA
244 GCACATCA---T-GTGCGCACACCCCCCGGCCCCGATC-GCCGGAA-CCCCAATGC-C-----GC
* * * * * * ** * * * ** * * *
20597586 GGGT-GGAGTTCT-TGAGGTTTGATGAGG-GATAGGGGGCCAGTA-TAAGGGCCAAGTACCAGCA
297 CGGTCAG-GTTCTCCGACG-ATGCTCCGGTGAT--GGTGCCTG-ACGAA--GAAAAATGCGA-CA
* * * * **** ** * * * * * *
20597647 CCCATTGCACAT-CAGGTGCGCACACCCCCCGCCCCCCCCGATCATCGGAACCCCAATGCCG-TC
354 -CCA--GCACATGC--CTGAGCCCAGCATGTG-CTGCCGCAACCCTCGG---TCCAGT-CCGATC
* * * ** * *
20597710 ---GA-TCAGG--T--TCTCCGGCGATGCTCCGAC---G-ATG------G--TGCCCT--GGCGA
409 TTAGACT-GGGAATGAACTCC-G-TATGCTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAA
* * * * * ** * * * ***
20597753 ---A-GAAA--A--ATAC-GGCAC-CAGCACATGCCCGA-GCCCAGCATGTGC-TGCCACAACCC
470 CCCATGAAACGAGCGTGCGGGCGCTCAGC-C-GGCCAGAGGGGCAGGATGCGCAAGCCGGGA---
* * ** * ** * * ** * ***
20597806 TCGGTCTGGT-ACGATCTTA-GATTGCGAATGAACTCC-G-TAT-GCTTAGACTGGGAATGAACT
530 TCGGTCGGGTCCCCCTC-TACG--TGCTACCG-A-TCCTGCTGTCGC-AACCCTCGGTCCG-A-T
* * ***** ** ** * * * **
20597866 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGGTCAGCCAGCCAGAGGGGCGGGATG
587 CCG-AT--CTTAGACTGGGAATG-AAC-TCCGT--ATGC-CTAAGCCAACC-GA----C--GAAA
** * * * * * ** * * *
20597931 CGAAAGCCGGG-GATCGGCCGGGTCCCCCT-CTA-CGTG-CTGCCGA-TCCTGCTGCTGTAACCC
637 CG--AG-CGGGCGGGCGGGCGGG---CACTAC-ACCG-GCCAG-AGAGACGGGATGC-GCAA-GC
** * ** * * ** * * * *** *
20597991 TCAGTCCAGTCCA-A---TCATAGACTGGGAATTAACTCTATATGCTTAAGACAACCGACGAAAT
691 T--GTGGA-TCGATAGGGTGGTAG-GTGGG--TTTAGGC-ACAT-CTTCATATTTCTG-CG---T
******* ** ** * * * * * **
20598052 G--AA-G-CAGGCGGGCGGGC-ACTACGCTGGCCAGAGAGACGGGATGCGC--AAGCCGTGGATC
744 GCCAATGCCA-TTTTTATGGCTTGTA-AAT--TCATACA-A-TGG-T-CCCTTAAGCC-TTCA-C
* * * * * **
20598110 GCT-AGGGTGGT-AGGTGGGTTCAAGCAC-ATCTTCATATTTCTA-TGTGC-C-A---ATGCCA-
799 G-TGA-AGT-TTCA--T-GG--CAAG-ACGA-C-TCAT-TTTCTATTTTTCACGATTTTTGAAAC
* * ** * ** * ** * ***
20598165 TTTTTATGGTTTGTAAATTCATACAA-TGGTCCCTTA-G-G
852 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
** ** *** * * * * * * * ** ** *
20598203 CCTTCACGTGAAGTTTCATGGCAAGAC--GACTCGTTTTCTATTTTTCACAACT-TTCAAAAATT
1 TTTTGGCCCCAA---ACTTGG-TAGACGTGA-TCCTTGTATTTTTTTGGC-A-TGCACAAAAAAT
** **** * * * ** * * ** **** **
20598265 TTTGC---GGTTTGGAATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAGCTTGGT--AG
59 TCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGT-G-ACCA--TTT-GAAAAAAG--T-GTCCCC
** * *** ** * ** *** **
20598325 ACGT--GATC-CTTGTATTTTTTTTTTTGCATGCAAA---AAAAAAT-T--AA-GCT-AAAAACT
115 ATTTCAGA-CACTT-TA-ATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* ** * ** * * ** * * **
20598379 CGAAGT--GTACAAGA-TTTTG-TGA--CAT---TTG--AA-ATAAGTGTCCCCA-TTTCAG-AC
176 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-G-GCCAAGTACCAGCAC
* ** * * ** * **** * * * * * *** **
20598430 AC-T-TTAAAGGC-TGCTG-GCAGCA--AACCTG-TAAAATC-TC-AAATGCTC-TTTAAGGGGG
239 CCATCGCACA-TCATG-TGCGCA-CACCCCCCGGCCCCGATCGCCGGAA-CCCCAATGCCGCCGG
** * * * * ** * * ** * * *
20598485 TGTGAGTTCT-TGAGGTTTGATGAGG-GATAGATGGCCAAT-A-TAAGGGCCAAGTACCAGCACC
300 TCAG-GTTCTCCGACG-ATGCTCCGGTGAT-GGT-GCC--TGACGAA--GAAAAATGCGA-CA-C
* * *** ** * * *
20598546 CATCACACAT-CATGTATG--CA-CA-CCCCCCCCGGCCACCCGATCGCCAGAACCTCAATGCC-
355 CA--GCACATGCCTG-A-GCCCAGCATGTGCTGCC-GCAACCC--TCG---G--TC-CAGT-CCG
* * ** ** * *** * * * **
20598605 ATCGGTCAGGTTCTCCGACGATGGTGCCCCG-ATGAAGAAAAATGCGGCACCA-GCACATGCCCC
406 ATC--TTA-G-ACTGGGA--AT-GAACTCCGTATG-CTTAGACTG-GG-A--ATGAAC-T-CCGT
* * * *** * * * * * ****
20598668 A-GCGTAGCATGTGCTA-CCA--CAACCCTCGATTCGGTCCGATCTTAGACTGGCAATGAACTTC
457 ATGCCTA--A-GT-CAACCCATGAAACGAGCG-TGCGG-GCG--CTCAG-CCGGCCA-GAGGGGC
* * ** * * * ** * ** ** ** *
20598729 -GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG-CGCTCAGT-CG-GCCAAAGGGGCGGGA
512 AGGATG-C---G-CAA-GC-CGGGAT-CG-GT-CGGGTCCCCCTCTACGTG-CTACCGATCCTGC
* ** * * * * * **
20598790 TG-CGCAAGCCGGGGAT-CGA-CCGGGTCCCCCTTTACGTGCTGTTGATCCTG--CTGCCGCAAC
566 TGTCGCAACCCTCGG-TCCGATCC-GAT----C-TTA-G-ACTG-GGA--ATGAACT-CCGTATG
* *** ** * ** ** * *
20598850 CCTCAATCTGGTCCGATC-TTA-GATG-GGGAAAGAAC-TCCGTATGC-CTAAGCCAACAAC-GA
618 CCT-AAGC-CAACCGA-CGAAACGA-GCGGG--CGGGCGGGCG--GGCACT-A--C-AC--CGGC
* * * ** * * * * ** *
20598909 AATGAGTGGGCGGGCGGGCGGGAAGGC-G-GGCACTACGTTGACGAG-AG-AGACGGG-AT-GCG
669 CA-GAG-AGACGGG-ATGC-GCAA-GCTGTGG-A-T-CGAT-A-GGGTGGTAGGTGGGTTTAG-G
* * ** *** * * * ** * * *
20598968 CA-AGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCAT-ATTTCTATATGC--
723 CACA-TC-T---TC-ATA--TTTCT-GCGT--GCCAATGC-CATTTTTATGGCTTGTAAATTCAT
* * * * * * *
20599028 -CAAT-G-CCATTTTTATGGCTT---GT-AAATTCATACAATGGTCACTTAAGCCTTCACGTGAA
776 ACAATGGTCC---CTTAAGCCTTCACGTGAAGTT--T-C-ATGG---C--AAGAC--GAC-T-CA
* *** *
20599086 GTTTC-ATGGCAAT-ACGACCCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCGAG
825 TTTTCTAT--TTTTCACGA----TTTT----------------T-GAAACTTTTTACGGTTCGGG
20599149 ATTTTTTAAAATTTTTTCGGAAGGAG
867 ATTTTTTAAAATTTTTTCGGAAGGAG
* *
20599175 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGTAAAAAAAATTCAGCT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAATTCAGCT
* *
20599240 AAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
20599305 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
20599370 TTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** ** *
20599435 CACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTTC
260 CACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * * * * * *
20599500 GGCGATGGTTCCCCGACGAAGAAAAATACGGCTCCAGTATATGCCCGAGCCCAGCATGTGCTGCC
322 GGTGATGG-TGCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
20599565 GCAA-CC-C--T-CA----G-TC-----C---G-AT----T-CG-AT-CTTAGACTGGGAATGAA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * ** * * * *
20599604 CTCCGTATGACTAAGTCAACTCACGAAACGAGCGTCCGGGCATTCAGTCAGCTAGAGGGG-TGAG
451 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-G
* * * * * * * * **
20599668 ATGCGCAAGTCGGGGATC-GACTGGTCCCCCTCTGCGTGCTGCTGATCTTGCTATCATAACCCTC
515 ATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTC
* * * * * * *
20599732 GATCTGGTCTGATCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----
579 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* ** * * *
20599793 GCAGGCGGGTAGGCACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGG
644 GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGG
* * * *
20599858 TAGGTGGGTTTAGTCACATCTTCATAATTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTC
709 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
20599923 ATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCA
774 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
* * * * *
20599988 TGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAG
839 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
**
20600042 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGGTGGCATGCACAAAAACATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCACAAAAA-ATTCAGC
*
20600107 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20600172 AATGGCTACTGGCAGCAAACC-GATAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTGGAG
129 AATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
20600236 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTG
193 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * *
20600301 CACACCCCCCCCCGGCCCCCCCGATCGCTAGAAGCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
258 CACA---CCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * * *
20600366 GCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
317 GCTCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTG
* * * * * ***
20600431 CTGTCGTAACCCTCGATTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAAAA
381 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
20600496 ATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAAGCGGGCGGGCGCTCAGCCGGCTAGAGGGG
446 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
20600561 CGGGATGCGCAAGCCGTGGATCTGG-CTGGCTCCCCCTCTGCGTGCT---G---C--C-AT---A
511 CAGGATGCGCAAGCCG-GGATC-GGTC-GGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCA
* *
20600613 ACCCTCGGTCCGATCC-ACCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-
573 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*** * **
20600675 -A-TAAGCGGGC-GGC---CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
638 GAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATA
* *
20600734 GGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTGC--ACCAATGCCATTTTTATGGCTTGT
703 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * * *
20600797 AAATTCATACAATTGTCCCTCAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCCTTTTCTAT
768 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
** * *
20600862 TTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
833 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20600922 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTAAAAAAAATTTAGCT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAATTCAGCT
*
20600987 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
20601052 ATGGCTACTGGCAGCAAACTTGCAAAATCTCAAATGCTC-TTCAGGGGGTGGGAGTTCTCGAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
20601116 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-TCAGCACCCATCACACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
20601180 CACCCCTCCGGCGCCCCCTATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATGCTC
260 CACCCC-CC-G-G-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * * *
20601245 CGGCGATGGTGCCCCGACAAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCAGC
321 CGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
* * * * *
20601310 CGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTACGGTTAGACTGGGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * **
20601375 ACTCCGTATGCCTAAGCCAACCC-TCGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGTGG
450 ACTCCGTATGCCTAAGTCAACCCAT-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* *** * ** * * * *
20601439 GATGTGCAAGCCGGGGATCTACCGGTTCCCTTTCTGCGTGCTGCCGATTCTACTG-CTGCAACCC
514 GATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTC-GCAACCC
* * * * *** * * *
20601503 TTGGTTCGGTCCAATCTTAGACTACAAATGAGCTCCGTATGCCTTAGCCAACAGACGAAACGAGC
577 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
20601568 GGGCGGGCAGGCAGGCGGGCATTACTCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
642 GGGCGGGC--G--GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATA
* * *
20601633 GAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGT
703 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
** * * *
20601698 AAATTCATACAATGGTCGTTTAAGCCTTCACGTTAAGTTTCACGGCAAGACGACTCGTTTTCTAT
768 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* * ** * * ** *
20601763 TTTTCATGATTTTTTAAACTTTTTGTGGTTCGAGATTTTTTAAACTTTTTTCAAAAGGAT
833 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
** * * *
20601823 TTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCAAAAAAAAATTCAGG
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTTTGGCATGC-ACAAAAAATTCAGC
* *
20601888 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTC
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20601953 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGCTGTGAGTTCTTGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20602018 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCAACGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
20602083 ACACCCCCCGGCCCCCCCGATCGTCGG-A-TCC----CCGTCGGTCAAGTTCTCTGGCGATGGTC
259 ACACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
** * * *
20602142 CGACGATGGTGCCCCGACGAAGAAAAATACGGCA-CAGCACATGCCCT-AGCCCAGCATGTGCTG
321 CGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATG-CCTGAGCCCAGCATGTGCTG
** * * *
20602205 CCGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATA
384 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
20602270 AACTTCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAA
449 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
** * * * * *
20602335 GATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCTACCAATCCTGCTG-CTGTAACCC
514 GATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTC-GCAACCC
* * * ** * * * *
20602399 TCGATCTGGTTTGATCTTAGACGGGGAATGAACTCTGTGTGCCTAAGCCAACCGACGAAATGAGT
577 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--
* * * * * *
20602464 GTACGGGCGGACGGGCGGGCCCTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCCATA
640 G--CGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATA
* *
20602529 GGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACTTGT
703 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
20602594 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
768 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* ** ** *
20602659 TTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
833 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20602719 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCAAAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGC-ACAAAAAATTCAGC
*
20602784 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
** * * *
20602849 AATGGCTACTGGTGGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTGGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* ** *
20602914 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCATAGATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
20602979 ACACCCCCACGGCCCCCCCGATCGCCAGAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGATGCA
259 ACACCCCC-CGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * *
20603044 CCGGCGATGGTGCCCCGGCAAAGAAAAATGC-AGCACCAGCACCTGGCC-GAGCCCAGCATGTGC
320 CCGGTGATGGTG-CCTGACGAAGAAAAATGCGA-CACCAGCACAT-GCCTGAGCCCAGCATGTGC
* * *
20603107 TGCCGTAACCTTCGGTCC-GATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGA
382 TGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
20603171 ATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTTCAGGCGCTCAGCAGGCCAAAGGGG
446 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ** * **
20603236 C-GCGATCCGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCTTGCTACCGCAA
511 CAG-GATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAA
** * * * **
20603300 CCCTCAAT-CTAGTCCAATCTTAGATTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAAC
574 CCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
20603364 GAGCGGGGGGGACGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGAC-GTGGAT
638 GAGC--GGGCG--GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAG-CTGTGGAT
* * *
20603428 CGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGG
698 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * *
20603492 CCTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTT
763 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * *
20603557 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAG
828 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20603622 TTTTGGCCCTAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA-AATTCAGC
*
20603687 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
20603752 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGGGAGTTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
20603817 TTTGATGTGGGATAGGAGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * * *
20603882 ACAACCCCTGGCCCCCCGATCGTCGGATCCACAAAGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
259 ACACCCCCCGG--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
** * *** * * *
20603947 GACGATGGTGCCCCGGTAAAGAAAAAAGCGGCACCAGCACATG-CTCGATCCCAGCATGTGCTGC
322 GGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCT-GAGCCCAGCATGTGCTGC
* * * *
20604011 TGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATTCTTAGACTGGGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
20604076 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTACGGGCGCTCAGCCGGCCAGA-GGGCAGG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * * * * *
20604140 ATGCGTAACCCGGGGATC-GACTGGGTCCCCCTCTGCGTGCTACCGAT-CTCGCTGCCCCAACGC
515 ATGCGCAAGCC-GGGATCGGTC-GGGTCCCCCTCTACGTGCTACCGATCCT-GCTGTCGCAACCC
* ** * *
20604203 TCGATCC-AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAA
577 TCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
20604267 CGGGCGGGCGGGGGAGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGCCGTGTATCGAT
641 CGGGCGGGC---GG-GCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGAT
* *
20604332 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATCCCATTTTTATGGCTTG
702 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * * *
20604397 TAAATTCATGCAGTGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTGATTTTCTA
767 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * *
20604462 TTTTTCACGATTTTTGAAAATTTTTGCGGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGAG
832 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
20604522 TTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAA-TTCAGC
* *
20604587 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-CAAAAAGTTTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20604651 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGAGTGAGTTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *** *
20604716 TTTGATGAGGGATAGGGGGCCATTACAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGT
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * *
20604781 ACACCACCCCCGGCCCCTTGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA---T
259 ACA-C-CCCCCGGCCCC--GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * * *
20604843 ---G-G-T-G-CCCCGACGAAGAAAAATACGGCACCGGCACATGCCCGAGCCCAGCATGTGCTGC
320 CCGGTGATGGTGCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
*
20604901 CGCAA-CC-C--T-C-G---G---TT---C---G---G---TCC-AAT-CTTAGACTGGGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
20604940 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AG
* ** * * ** *
20605005 G-TGCGCAAGCTGGGGATCGGTTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCT
514 GATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCT
* * * * *
20605069 TGGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGCCAGCCGACGAAACGA---
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * * *
20605131 -GCAGGTGGGCGGGCACCACGCCGGCCCGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
643 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
* * *
20605195 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTAAGGCTTGTAAATT
708 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
20605260 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCGTTTTGTATTTTTC
773 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* ** * * * * *
20605325 ATGATTTTCAAAAATTTTTGA-GTTTCGAGATTTTTTTAAATTTTTTCAGAAGGAG
838 ACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20605380 TTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAG
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGC--ACAAAAAATTCAG
20605445 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
63 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
20605510 TAACGGCTACTGGAAGCAAACCTGCAAAATCTCAAATGC-CTCTTAAGGGGGTGTGAGTTCTCTA
128 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGA
* *
20605574 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATATGC
192 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
20605639 GCACACCCCCCGACCCCCCCGATCACTGGATCCCCAATGACGCCGGTCAGGTTCT-CGATGATGC
257 GCACACCCCCCG---GCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* ** * *
20605703 TTCGACGATGGTGCCCTGACAAAGAAAAATGCCG-CACCAGCACATGCTTGAGCCCAGCATGTGC
319 TCCGGTGATGGTG-CCTGACGAAGAAAAATG-CGACACCAGCACATGCCTGAGCCCAGCATGTGC
* * *
20605767 CGTCGTAA-CC-C--T-C-G---G-TC-T-GA-T-----T----T--G-AT-CTTAGACTGGGAA
382 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
20605806 TGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
447 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * ** ** *
20605871 GGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTATGCGTGCTGTCGATCCTGCTACCACAACC
512 AGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACC
* * * * * *
20605936 CTCGGTCTGATCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAACCGATTAAGCAAG
576 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG---ACG-AAA
* * * ** * *
20606001 CGGGCAGGCGGGTGGGCGGGCACTAC-GTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGAT
637 CGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGAT
* *
20606065 AGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTC
702 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
20606130 TAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
767 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
** * *
20606195 TTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT
832 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20606256 TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTAGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCAC-AAAAAATTCAGC
*
20606321 TAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20606386 AATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * *
20606451 TTTGGTGAAGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACGTCATATGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
20606516 ACACCGCCCCCCCGGCCCCCTCGATCACCGAAAACCCAATGCCACGGGTCAGGTTCTCCGGCGAT
259 ACA----CCCCCCGG--CCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
** * * * * * *
20606581 GCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
317 GCTCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTG
** * * **
20606646 CTGTGGAAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
381 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* ** * * * *
20606711 ATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTTAGCCGGCCAGACGGG
446 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * ** *
20606776 CGGGTTGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTACCACAAC
511 CAGGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAAC
* * * * * * * * *
20606841 CCTCGGTCTGGTCTGATCTTAGACTGGCAATGAGCTTCGTATGACTAAGCCAACCGATGAAATGA
575 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * ** * * * *
20606906 GCGAACGGACGGGCGGGCACTATGCCGGCCAAAGAGAAGGGATGGGCAAGCCGTGGATCGATAGG
640 GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
* *
20606971 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
20607036 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
770 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
*** * * *
20607101 TTCACGATTTCCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGAAG
835 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20607159 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
20607224 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20607289 AATGGCTACTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCGCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20607354 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
20607419 ACACCCCCTGGCCCCCCAATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGATGATTCTCC
259 ACACCCCCCGG--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
** * * * *
20607484 GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
322 GGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * * * *
20607549 GTAACCCTTGGT-CAATCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
20607613 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGCACTTAGCCGGCCAGAAGGGCGGGA
451 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * * * ** *** * **
20607678 CGTGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGTTGATCTTGCTACCGCAACCCTCG
516 TGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTCG
* * * *
20607743 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGA
580 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* ** **
20607808 TGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
645 CGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
* * ** *
20607873 AGGTCGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGAATTCA
710 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
20607938 TACAATGGTCCCTTAACCCTTCACGTGAAGTTTCAGGGCAAGACGAC-CGGTTTTCTATTTTTCA
775 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-ATTTTCTATTTTTCA
* * * *
20608002 AGATTTTTGAAACTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGGAAGGAG
839 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20608056 TTTTGGCCCCAAACTTGGTAGACGGGATCCTTTTATTTTTTTTGGCTTGCACAAAAACATGT-AG
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAA-AT-TCAG
*
20608120 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
63 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20608185 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
128 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
20608250 GTTTGAT----G--A---GG--AATCT------CAAGTACCAGCACCCATCGCACATCATGTACG
193 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** *
20608298 CACACCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGCCAGTCAGGTTCTCCGACGATGCT
258 CACACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
*** * * * * * *
20608363 CCAACGATGGTGCCCCGACAAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTA
320 CCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTG
* * * * *
20608428 CCGCAACCCTCGGTCCGGTCCGATCATAGACTTGGAATCAACTTCGTATGCTTAGACTGGGAATG
384 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * *
20608493 AAATCCATATGCCTAAATGAACCCATGAAACGAACGTGAGGGCGCTCAGCCGACCAGAGGGGCAG
449 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
** * * * * * * ** *
20608558 GGGGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATCTTGCTACCACAACCCT
514 GATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCT
* * *
20608623 CGGTCCGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
20608688 GGCGGACGGGCAGGCACCACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
643 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
* * *
20608753 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTGTAAATT
708 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
20608818 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTTTATTTTTC
773 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * * * * * * * *
20608883 ATGATCTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAAGAAT
838 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * * *
20608938 TTTTGGCCCAAAACGTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
* *
20609003 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
20609068 AACGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCTAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
20609133 TTTGATGAGGGATATGGGGCCAATGTAAGGGCCAAGTACCAACGCCCATCGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
20609198 ACGCCCCCCAGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
259 ACACCCCCC-G-GCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * * * * * *
20609263 GGCGACGATGCCCCGACGAACAAAAATGTGAGACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
322 GGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * * * *
20609328 GCAACCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAAC-GGGAATAA
386 GCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
20609391 ACTCCATATGCCTAAGTCAACTCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGACGGG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * * * **
20609456 ATGCGCAAGCCGAGTATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCCTC
515 ATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTC
* * *
20609521 GGTCCGATCCGATCTTAGGCTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAATGAGCGG
579 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* ** *
20609586 GCGGGCAGACGGACGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
644 GCGGGC-G--GG-CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
* *
20609651 GTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAA
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
20609716 ATTCATAAAATGGTCCCTTAAGCCGTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTACTATTT
770 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * *
20609781 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
835 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20609839 TTTTGGCCCC-AACTTGGTATACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAACTTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAA-TTCAGC
* * *
20609903 TAAAAATTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20609968 AATGGCTACTGGCAGCAAACCTGT--AA--T----GGCTCTTTAACGGGGTGTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * *
20610025 TTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACAAATCATGTACGG
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * **** * *
20610090 ACAACCCCCCCGG-CCC--TC-CC-GATGCCGCCAGT-CAGGTTCTCCAGTGATGCCCCGACGAT
259 AC-A-CCCCCCGGCCCCGATCGCCGGA-ACC-CCAATGCCGCCGGT-CAG-G-TTCTCCGACGAT
** * * * * *
20610149 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCAGCAGCACATG-CTCGAGCCCAGCATGT
317 GCTCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCT-GAGCCCAGCATGT
** *
20610213 GCCACCGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
380 GCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
20610277 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGACCAGAGG
444 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * * * * * ** * * *
20610342 GGTGGGATGCGTAAGTCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTACTGCCACA
509 GGCAGGATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCA
* * * *
20610407 ACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
573 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
20610472 GAGTAGGCGGGCGGGCGGGCGGGCACTGCATCGGCCAGAGAGACGGGTTGCGCAAGCTGTGGATC
638 --G-A-GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
* * * * *
20610537 GATAGGGTGGTAGGTGAGTTTAGGCACATTTTCATCTTTCTGTGTGGCAATGCCATTTTTATGGC
699 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* *
20610602 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTT
764 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * * * * * * * *
20610667 TTATTTTTCATGATCTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAAGAAT
829 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * * *
20610731 TTTTGGCCCAAAACGTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
*
20610796 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * * * * *
20610861 GATTGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTGTCGAGC
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*** * *
20610926 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATGCTTTATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * ** *
20610991 ACACCCCCCTGCCCCCCCGATCGTCGGAACCCCAATGTTGCCGATCAGGTTCT-C--C---G---
259 ACACCCCCC-G--GCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
** * * * *
20611047 -GG-GATGGCACCCCG-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
321 CGGTGATGG-TGCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
* * *
20611109 CGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGA
385 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
20611174 ACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAACCGGCCAGAGCGGCGGG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * * ** * *
20611239 ATGCGCAAGCCGGGATCGGCCAGGTCCCCCTTTGCGTGCTGTC-ATCCTGTTG-CTGCAACCCTT
515 ATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTC-GCAACCCTC
* * *
20611302 GGTCCGGTCCGATCTTAGAATGGGAATGAGCTCCGTAT-CCTCAAGCCAACCGACGAAACGA---
579 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGCG
* *
20611363 -GCGGGCGGGCGGGCACTAAACCGGCCAGAGAAACGGGATGCGCAAG-TCGTGGATCGATAGGGT
643 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGT
* *
20611426 GGTATGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
707 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20611491 TCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
772 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
** * * *
20611556 CACGATTTTTGAAACTTTTTACAATTCGAGATTTTTCAAAATTTTTTCAGAAGGAG
837 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20611612 TTTTGGCCCCAAACTTGGTAAAGGTGATCCTTGTAAATTTTTTGGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCAC-AAAAAATTCAGC
** *
20611677 TAAAAACTCGAAGTGTACAAGATTTTAAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20611742 AATGGCGACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
20611807 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACTAGCACCCACCGCATATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * * *
20611872 ACATTCCTTCGGCCC-CCCCCGATCGTCGAAAACCCGATGCCTCTGGTTAGGTTCT-C--C---G
259 ACA--CC--C--CCCGGCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
20611930 ----GG-GATGGTGCCTCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
318 CTCCGGTGATGGTGCCT-GACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGC
* * ** *
20611990 TGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
382 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
20612055 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGC
447 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
20612120 GGGATGCACAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTACTGATCCTGCTATCGTAAAC
512 AGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACC
* * * *
20612185 CTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAG
576 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
20612250 AGGACGGGCGGGCGGGCACTACGCCAGCCTGAGAGACGGGATGCGCAAG-TCGTGGATCGATAGG
641 CGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGG
* * * * *
20612314 GTGGTAGTTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATACAATTTTTATGGCTTGTAA
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * ** *
20612379 ATTAATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTTGTTTACTATTT
770 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * * *
20612444 TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGTAA
835 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
20612502 TTTTGGCCCCAAACTTGGTATACGTGATCCTTGTCTTTTTTTTAGCATGCACAAAAAAATTCAAC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCAC-AAAAAATTCAGC
* * * * *
20612567 TAAAAAGTCGAGGTGTACAAGATTTTGTGACCATTTGTAAAAAGTGTCCTCAATTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * * *
20612632 AGTCGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGGTCTTGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20612697 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCACA-TACTAGTACCCATCGCACATCATGTGCG
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCG
** * * * * *
20612761 CACACACCCCTCGGCCCACCCGATCATCGAAACCCTAATGCTGTCGGTCAGGTTCTCC-AGTGAT
258 CACAC-CCCC-CGG--C-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* * * * *
20612825 GCTCAGGTGATGGTGCACTGGCGAAGAAAAATACGACACCAGAACATGCCCGAGCCCAGCATGTG
317 GCTCCGGTGATGGTGC-CTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTG
* * * * * * *
20612890 CTACCGCAACCCTCGATTC-GATCCGATCTTAGACTAGGAATTAACTCTGTATGCTTAGACTGCG
381 CTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
20612954 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACATGCGGGCGCTCAGCCGGCCAGAGGG
445 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * *** * *
20613019 GCAGGATGCGTAAGCCAGGGATCGG-CTGGGTCCCCCTTTACGTGCTGTTGATCCTGCTGCCACA
510 GCAGGATGCGCAAGCC-GGGATCGGTC-GGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCA
* * * *
20613083 ACCCTCGGTCCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACTAAAC
573 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
** * *
20613148 GA--------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCAATA
638 GAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATA
* *
20613205 GGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
703 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * *
20613270 AAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTAT
768 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* * ** ** *
20613335 TTTTTAGGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATATTTTT-GAAAGGAG
833 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAG
* *
20613395 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCAAAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGC-ACAAAAAATTCAGC
* *
20613460 CAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20613525 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGATTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * **
20613590 TTTGGTGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAT
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * ** * *
20613655 ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGGTGAAGGTC
259 ACACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * * * **
20613720 TGATGACGGTGCCCCTG-CGAAAAAAAATGCGGCACCAGGACATGCCCAAGCCCAGCATGTGCTG
321 CGGTGATGGTG--CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTG
*
20613784 TCGCAA--C-C--T----T--GA---T---CT--G-AT---CT--G-AT-CTTAGACTGGGAATG
384 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
20613822 AACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
449 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * ** ** ** *
20613887 GATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCT
514 GATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCT
* **
20613952 CGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
20614017 GGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACAGGATGGGCAAGCCGTGGATCGATAGGGTG
643 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
* * * *
20614082 GTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAGTT
708 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* **
20614147 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTC
773 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * *
20614212 ACGATTTTTGAAAATTTTTACGGTTTGCGATTTTTTAAAATTTTTTCGGAAGGAG
838 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
20614267 TTTTGGCCCCAAACTTGGTAGACTTGATTCTTGTATTTTTGCTGGCATGCACAAAAACATTCAAC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA-ATTCAGC
* * * *
20614332 TAAAAACTCAAAGTGCACAAGATTTTGTGGCCATTCGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20614397 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTC-CTTTTAAGGGGGTGTGAGTTTTCGAG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAG
* *
20614461 CTTTGATGAGGGATAGGGGGCCAACATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCG
193 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
20614525 CACATCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGC
258 CACA-CCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
*** * * * * * * **
20614590 TCCAACGATGGTGCCTCAGTGAAGAAAAATGAGGCACTAGCACATGCCCGAGCCCAAAATGTGCT
319 TCCGGTGATGGTGCCTGA-CGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCT
* *
20614655 TCCACAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAAT
383 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
20614694 GAACTCCGTATGCCTAAGTCAATCCATGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCG
448 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* * * * ** * ** **
20614759 GGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTATGCGTGCTACTAATCTTGCTACCATAACCC
513 GGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCC
* * * * ** *
20614824 TCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGC
577 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * ** **
20614889 GGGCGGACGGGACGGGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCATAAGCCATGGAT
642 --G-GG-CGGG-C----GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGAT
* * *
20614954 CGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGG
698 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
20615019 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
763 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * *
20615084 TCTATTTTTCAGGATTTTTTAAA------A----T----A-TTTTT-GAA---------AAGGAG
828 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
20615124 TTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
* *
20615189 TAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
20615254 AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20615319 TTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * ** * *
20615384 ACA-CCGCC--CCCCAATCACCGGAAACCCAAAGCCGTGGGTCAGGTTCT-CTAGCGATGCTCTG
259 ACACCCCCCGGCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCG
* * * *
20615445 GCGATGGTGCCCCGACGAAGAAAAATGC-ACCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
323 GTGATGGTG-CCTGACGAAGAAAAATGCGA-CACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* ** * ** * *
20615509 GAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCTATATGCATAGACTAGGAATGAA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** * * * * ** **
20615574 CTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCAAACAGGTGGGA
451 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * * * * *** * ** *
20615639 TGCACAAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTGTTGATCCTACTCCCACAACCCTCG
516 TGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTCG
* * * *
20615704 ATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----
580 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
20615764 ---GCAGGTGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGGTGG
645 CGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGAT-AGGGTGG
** **
20615826 TA-GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTTCTTGTAAATTC
709 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
20615890 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACAACTCGTGTTCTATTTTTCA
774 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
* *** * * * *
20615955 TGATTTCCAAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAT
839 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
20616009 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
**
20616074 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATGCTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20616139 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20616204 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCACGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
20616269 ACACCCCCTGGCCCCCCTATCGTCAGAACCCCAAAGCCGGCGGTCAGGTTCTCCGATGATGCTCC
259 ACACCCCCCGG--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
** * * * * * *
20616334 GACGATGGTGCCCCGACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
322 GGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * * * * ** *
20616399 GTAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCACAGGCTTAGACTGGGAATGAA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * * **
20616464 CTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGCGCGGGTGCTTAGCCGGCTAGAAGGGTGGGA
451 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * * * * * * *
20616529 CGTGCATGCCGGGGATC-GACTGGGTCCCCTTCTGTC-TGCTGCCGATCCTGCTGCCGCAACCCT
516 TGCGCAAGCC-GGGATCGGTC-GGGTCCCCCTCT-ACGTGCTACCGATCCTGCTGTCGCAACCCT
* * * * *
20616592 CGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGAGCG
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * * *
20616657 GGCTGGCGGGTGGGCACTACGCCGGCTAGAGAGACTGGATGCGCACGCCGTGGATCGATAGGGTG
643 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
* * * * *
20616722 ATAGGTCGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTGAATT
708 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
20616787 CATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
773 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * * * * * * *
20616852 AAGATTTTTGAAAGTTTTTGCGCTTTGAGATTTTTTTAAATTTTTTCGAAAGGAG
838 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20616907 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGCCATGCACAAAAACATTTAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA-ATTCAGC
* *
20616972 TAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20617037 CATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20617102 TTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * *
20617167 ACACCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGTCGGTCAGGTTCTCCGATGATGCTC
259 ACACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * * * **
20617232 CAGTGATGGTGCCCCGACAAAGAAAAAAGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
321 CGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
* * * * * *
20617297 CGTAACCCTCGGTCC-GATCCAATCATAGACTTGGAATGAACTCCGTATGGTTAGACTGGGAATA
385 CGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * **
20617361 AACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGAGGGTGCTCAGCCGGCCAGAGGGGTGG
449 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * * ** * **
20617426 GATACGCAAGCCGAGGATC-GACAGGGTCCCTCTCTGTGTGCTACCGATCCTGCTGCCTTAACCC
514 GATGCGCAAGCCG-GGATCGGTC-GGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCC
* * * * * * * *
20617490 TCGGTCTGGTCTGACCTTAGACAGCGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGC
577 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * *
20617555 -GGC---CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGT
642 GGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
* * * * *
20617616 GGTAGGTGGGATTAGGCACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTTTAAAT
707 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * * *
20617681 TCATAAAATGGTCCCTTAAGACTTCACATCAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTT
772 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* ** * * *
20617746 CATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAAT
837 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AG
*** * *
20617803 TTTTTTTCCCAAACTTGGTAGACGTGATCGTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAATTCAGC
*
20617868 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20617933 AATGGCTACTGGTAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20617998 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
20618063 ACACCCCCCGCCCCCCGATCACCAGAACCCCACTGCCGTCGGTCAGGTTCTCCGACGA---T---
259 ACACCCCCCG-GCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* ** * * *
20618122 G-G-T-GCGCC-GGTGAAGAAAAATAC-AGCACCAGCACATG-CTCGCGCCCAGCATGTGCTGCT
323 GTGATGGTGCCTGACGAAGAAAAATGCGA-CACCAGCACATGCCT-GAGCCCAGCATGTGCTGCC
**
20618181 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-TATAGACTGGGAATGA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT-TAGACTGGGAATGA
* * * * * *
20618245 ACTCCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGCCGACCAGAGGGGCGGG
450 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * ** * * *
20618310 ATGCGCAAGTCGGGGATCGG-CTGGGTCCCCCTCTACATGCTGTCGATCTTGCTGCCGGAACCCT
515 ATGCGCAAG-CCGGGATCGGTC-GGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCT
* * ** * * * *
20618374 CGGTCTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCC-ACCGAATGAAATGA--
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGC
* * * * *
20618436 --GCGGACGGGCGGGCACTACGCCGGCCAAAGGAGACGGGACGCAGCAAGCCGTGGATCGATAGG
642 GGGCGGGCGGGCGGGCACTACACCGGCCAGA-GAGACGGGATGC-GCAAGCTGTGGATCGATAGG
* * * *
20618499 GTGGTAGGTGGGTTTAGAGCAAATCTTCACATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
705 GTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
20618564 AATTCATACAATGGT-CCTTAAG--TTCACGTGAAGTTTCATGGTAAGGACGACTCGTTTTCTAA
769 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGA--C----TC--A
20618626 TTTTTTCACGTGAAGTTCATGGCCAAGCGACTTGTTTACTATTTTTCATGATTTTTTGAAACTTA
825 -----T----T----TTC-T---------A-TT-TTT-C-A-----C--GA-TTTTTGAAACTT-
* *
20618691 TTTACAGGTTCGAGATTTTTT-AAACTTTTTCGGAAGGCAG
854 TTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AG
* * *
20618731 TTTTGGACCCAAACTTGGTAGACG-GGTCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAATTCAGC
* * * *
20618795 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATTCCAAACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20618860 AGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20618925 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
20618990 ACACCCCCTCAGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTTAGGTTCTCCGGCGATGCT
259 ACACCCCC-C-G--GCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
*** * * *
20619055 CCTACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
320 CCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTG
* *
20619120 CCGTAACCCACGGTCC-G---G---TT---C-------G-A---C-----CTTAGACTGGGAATG
384 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
20619159 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGTCGGCCAGAGGGGCGG
449 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * ** * * * * * * * *
20619224 GATGTGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCCTGTTGCCGATCTTGTTGCCGCAACCCT
514 GATGCGCAAG-CCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCT
* * * * *
20619289 CGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAGGCA
578 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A
* * * * * **
20619354 GGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGATGGGATGCACAAGCCATGGATCGATAG
640 -GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAG
* * * * *
20619419 AGTGCTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
704 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
20619484 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCGTTTTCTATT
769 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* * * * * * * *
20619549 TTTCAAGATTTTCGCAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGCAATGAG
834 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
20619608 TTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC-AAAAAATTCAGC
*
20619672 TAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20619737 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
20619802 TTTGATGAGGGATTGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
20619867 ACACCCCCCCCGGCCCCTCTGATCGCAGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
259 ACA--CCCCCCGG-CCC-C-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * *
20619932 TCCGGTGACGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCT
319 TCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCT
* * * * * * * *
20619997 GTCACAGCCATCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTAAGCTTAGA-TAGAGAA
383 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAA
* *
20620061 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGC
447 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * ** * *
20620126 AGGATGCGCAAGCCGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCT-ACTGCAACC
512 AGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTC-GCAACC
* * *
20620190 CTCAGTCCTG-TTCGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A
576 CTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * ** * *
20620253 ---AGTGGACGGGCGGACACTATACCGGCCAGAGAGATTGGATGCACAAGCCGTGGATCGATAGG
640 GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
* * * * **
20620315 GTGGCATGCGGGTTCT-GCCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
705 GTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
20620379 AAATGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATT
769 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* ** * * * * *
20620444 TTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAACGAT
834 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20620503 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAATTCAGC
* * *
20620568 TAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTT
64 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20620633 AATGGCTACTGGCAGCAAACCTGCAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
129 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
20620698 TTTGATGAGGGATAAGGGGCCAATATGAGGGCCAAGTACCAG-ACCCATCGCACATCATGTGGGC
194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * ** *
20620762 ACACCCCCCTAGGCCCCCCCGATTGCCGGAACCCTAATGCTGCCGGTTAGGTTCTAAGGCGATGC
259 ACACCCCCC--GG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
** * * * * *
20620827 TCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAACATGTGCT
319 TCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCT
**
20620892 GCCAAAACCCTCGGTCC-G---G-TC-----C-------G-A-T-C--A----TAGACTGGGAAT
383 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
20620931 GAACTCCGTACGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAGCCGGCCAG-GGGGCG
448 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* * * * * **
20620995 GGATGCGCAAGCTGAGAATCGATCGGGTCCCCCTCTCCGTGCTGCCGATCCTGCTACCGCAACCC
513 GGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCC
* * * * * * *
20621060 TCGGTCTGGTCCTATCTTTGATTGGGAATAAACTCCGTATGCCTATGCCAACCGACGAAACGA--
577 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
20621123 --GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAACCCGTGGATCGATAGGGT
642 GGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
* * * *
20621186 GGTAGGTGCGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCAATTTTTATGGCTTGTAAAT
707 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * ** *
20621251 TAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGGTTTATATTTTT
772 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * * *
20621316 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAATGTG
837 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20621372 TTTTGGCCCCAAACTTGGTCGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCACC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA-AATTCAGC
20621437 TAAAAAC-CGAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
64 TAAAAACTCG--AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
20621501 TTATTGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
127 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
20621566 GGCTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC
192 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** **
20621631 GCACACCCCCCCGAGCCCCCCGATCGTCGGAATCATAATGCCGCCGGTCAGGTTCT-TTAGCGAT
257 GCACA-CCCCCCG-G--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* * ** * * *
20621695 GCTCTGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTG
317 GCTCCGGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTG
* * * * *
20621760 TTGCCGCAAGCCTCGGTTC-GATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGG
381 CTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
20621824 AATGAACACCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCC-GCCAGAGGG
445 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * **
20621888 GAAGGATGCGCATATGCCGGGGATCTCGGTCGAGT-CCCCTCCTACGTGCTGCC-ATTCCTATTT
510 GCAGGATGCGCA-A-GCC-GGGA--TCGGTCGGGTCCCCCT-CTACGTGCTACCGA-TCCT-GCT
* * * *
20621951 GCCGTAACCGCTCAAGGTCCTGGATCTGATCATTAGACTGGGAATGGGACTCCGTATGGCCTAAG
567 GTCGCAACC-CTC--GGTCC--GATCCGATC-TTAGACTGGGAAT-GAACTCCGTAT-GCCTAAG
* *
20622016 CCAACCGACGAAACGAGCTGGGCGGTGC-GGCAGGGCAAGGCCAATTACGCTGGCC-GAAGAGAT
624 CCAACCGACGAAACGAGC-GGGCGG-GCGGGC-GGGC-A---C---TACACCGGCCAG-AGAGA-
* * * *
20622079 TGGGATGCGGTAAGCCGTGGGATCGATAGGGTGGTAGGTGGGTTTAGTCCACATCTTCATTATTT
677 CGGGATGC-GCAAGCTGT-GGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCA-TATTT
* *
20622144 CTGCATGCCCAATTTG-CATTTTTATGGCTTGTAAATTCATACAATCGG-CCCTTAACCCTTTCA
738 CTGCGTG-CCAA--TGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCC-TTCA
* *
20622207 CGTGAAG-TTCATGGCAAGACGACTCGTTTTCTAATTTTT-ACG-TTTCTCGAAACTTTGTTACG
798 CGTGAAGTTTCATGGCAAGACGACTCATTTTCT-ATTTTTCACGATTT-TTGAAACTTT-TTACG
* *
20622269 GTTTGGGATTTTTTCAAAATTTTTTTGGAA-GAG
860 GTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAG
** * *
20622302 -TTTGGCCCCAAACTTTTTAGATGTTATCCTTGTATTTTTTTGGCATGCACAAAACAATTCAGCT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAA-AATTCAGCT
* * *
20622366 AAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTCAAAGAAGT-TCCCCATTTCAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
20622430 ATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20622495 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * *
20622560 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGTCGTCGGTTAGGTTCTCCGATGATGCTTC
260 CACCCCCCGG---CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * ** *
20622625 GGCGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTTTTGCT
322 GGTGATGGTG-CCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* *
20622690 GTAA--------CCA-T-CGATC-----C---G---G---TCCG-AT-CTTAGAATGGGAATGAA
386 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
20622729 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCTCTCAGCCGGCCAGA-GGGCTGGG
451 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGG
* * * * * *
20622793 ATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTC
515 ATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTC
* * * *
20622858 GGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGG
579 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--
* * * * *
20622923 GTGGGCGGGCGGGCGGGCACTACACCGGCCAGAGATAAGGGATGTGCAAGCCGTGGATCAATAGG
642 --GGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
**
20622988 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
20623053 ATTCATACAATGGTCCCTTAACCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
770 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * * * * * *
20623118 TCCACAATTTTT-AAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGTAT
835 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
20623175 TTTTGGCCCAAAACTT
1 TTTTGGCCCCAAACTT
20623191 TTTTAGATGT
Statistics
Matches: 25240, Mismatches: 3770, Indels: 2654
0.80 0.12 0.08
Matches are distributed among these distances:
850 1 0.00
851 90 0.00
852 5 0.00
853 1 0.00
855 1 0.00
856 4 0.00
857 407 0.02
858 115 0.00
859 74 0.00
860 317 0.01
861 19 0.00
863 2 0.00
864 311 0.01
865 170 0.01
866 43 0.00
867 106 0.00
868 240 0.01
869 663 0.03
870 283 0.01
871 197 0.01
872 738 0.03
873 405 0.02
874 149 0.01
875 521 0.02
876 298 0.01
877 484 0.02
878 202 0.01
879 200 0.01
880 449 0.02
881 646 0.03
882 910 0.04
883 558 0.02
884 323 0.01
885 601 0.02
886 329 0.01
887 389 0.02
888 143 0.01
889 135 0.01
890 922 0.04
891 608 0.02
892 1050 0.04
893 1297 0.05
894 188 0.01
895 871 0.03
896 1312 0.05
897 1077 0.04
898 765 0.03
899 725 0.03
900 448 0.02
901 1194 0.05
902 178 0.01
903 1224 0.05
904 427 0.02
905 54 0.00
906 275 0.01
907 112 0.00
908 33 0.00
909 37 0.00
910 13 0.00
911 5 0.00
912 3 0.00
913 3 0.00
914 11 0.00
915 185 0.01
916 13 0.00
917 6 0.00
918 3 0.00
919 7 0.00
920 68 0.00
921 48 0.00
922 32 0.00
923 54 0.00
924 11 0.00
925 139 0.01
926 160 0.01
927 285 0.01
928 84 0.00
929 127 0.01
930 93 0.00
931 22 0.00
932 6 0.00
933 3 0.00
934 2 0.00
936 10 0.00
937 17 0.00
938 13 0.00
939 10 0.00
940 17 0.00
941 69 0.00
942 26 0.00
943 20 0.00
944 9 0.00
945 14 0.00
946 25 0.00
947 20 0.00
948 6 0.00
949 12 0.00
950 11 0.00
951 4 0.00
955 2 0.00
958 1 0.00
961 1 0.00
963 2 0.00
964 6 0.00
965 8 0.00
966 7 0.00
967 15 0.00
968 8 0.00
969 44 0.00
970 14 0.00
971 8 0.00
972 19 0.00
974 4 0.00
975 6 0.00
976 3 0.00
978 2 0.00
982 3 0.00
983 6 0.00
984 9 0.00
985 7 0.00
986 11 0.00
987 9 0.00
988 8 0.00
989 4 0.00
990 6 0.00
991 4 0.00
992 18 0.00
993 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTG
ATGGTGCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
AAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGA
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
Found at i:20597277 original size:102 final size:102
Alignment explanation
Indices: 20597101--20597311 Score: 377
Period size: 102 Copynumber: 2.1 Consensus size: 102
20597091 CAGGAGGCGC
* ** *
20597101 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTATTAGCCAATGC
1 AAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAATGC
20597166 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
20597203 AAGCCTTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTATGAGCCAATGC
1 AAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAATGC
20597268 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
66 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
20597305 AAGCCTT
1 AAGCCTT
20597312 CACGTGAAGT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 104 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (102 bp):
AAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
Found at i:20597860 original size:26 final size:26
Alignment explanation
Indices: 20597821--20597873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20597811 CTGGTACGAT
*
20597821 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
20597847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20597873 C
1 C
20597874 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:20602258 original size:26 final size:26
Alignment explanation
Indices: 20602229--20602281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20602219 CCGGTTCGAT
*
20602229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
20602255 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20602281 C
1 C
20602282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20603162 original size:26 final size:26
Alignment explanation
Indices: 20603133--20603185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20603123 CCGATCCGAT
20603133 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
20603159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20603185 C
1 C
20603186 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20604069 original size:26 final size:26
Alignment explanation
Indices: 20604033--20604084 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20604023 TCCGGTCCGA
*
20604033 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
20604059 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
20604085 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:20606702 original size:26 final size:26
Alignment explanation
Indices: 20606673--20606725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20606663 CTGGTCCGAT
20606673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20606699 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20606725 C
1 C
20606726 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20607606 original size:26 final size:26
Alignment explanation
Indices: 20607570--20607622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20607560 TCAATCTGAT
20607570 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20607596 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20607622 C
1 C
20607623 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20607694 original size:897 final size:897
Alignment explanation
Indices: 20604924--20623190 Score: 21678
Period size: 890 Copynumber: 20.5 Consensus size: 897
20604914 TCGGTCCAAT
* *
20604924 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
20604989 CGGCCAGAGGGGCGAGG-TGCGCAAGCTGGGGATCGGTTAGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCG-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
* * *** * * *
20605053 CTGCTACCACAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
20605118 GCCGACGAAACGAGC---AGG-TGGGCGGGCACCACGCCGGCCCGAGAGGCGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
20605179 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
20605244 TTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
20605309 TCGTTTTGTATTTTTCATGATTTTCAAAAATTTTTGA-GTTTCGAGATTTTTTTAAATTTTTTCA
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
20605373 GAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAA
20605438 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
20605503 GACACTTTAACGGCTACTGGAAGCAAACCTGCAAAATCTCAAATGC-CTCTTAAGGGGGTGTGAG
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAG
* *
20605567 TTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
20605632 CATATGCGCACACCCCCCGACCCCCCCGATC-ACTGGATCCCCAATGACGCCGGTCAGGTTCT-C
712 CATGTGCGCACACCCCCCG-GCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * **
20605695 GATGATGCTTCGACGATGGTGCCCTGACAAAGAAAAATGCCGCACCAGCACATGCTTGAGCCCAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
20605760 CATGTGCCGTCGTAA-CC-C--TCG----G-TC-T-GA-T-----T----T--G-AT-
840 CATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20605793 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
20605858 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTATGCGTGCTG-TCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * *
20605922 CTGCTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
20605987 ACCGATTAAGCAAGCGGGCAGG-CGGGTGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGCGC
195 ACCGACGAAACGAGCGGGC-GGAC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
20606050 AAGCCGTGGATTGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
20606115 CATTTTTATGGCTTCTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
20606180 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * *
20606245 TTCAGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTAGCATGCACAA
450 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
20606310 AAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20606375 TCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
20606440 AGTTCTCAAGGTTTGGTGAAGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * * * *
20606505 GTCATATGCGCACACCGCCCCCCCGGCCCCCTCGATCACCGAAAACCCAATGCCACGGGTCAGGT
710 ATCATGTGCGCACA----CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
20606570 TCTCCGGCGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAG
770 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * * *
20606635 CCCAGCATGTGCTGTGGAAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
835 CCCAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20606699 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
20606764 CGGCCAGACGGGCGGGTTGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
20606829 TGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATGAGCTTCGTATGACTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * *
20606894 CCGATGAAATGAGCGAACGGACGGGCGGGCACTATGCCGGCCAAAGAGAAGGGATGGGCAAGCCG
196 CCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
20606959 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
20607024 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
20607089 CGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
20607154 AGAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
20607219 TAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
20607284 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCG
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
20607349 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20607414 TGCGCACACCCCCTGGCCCCCCAATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGATGAT
716 TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* *
20607479 TCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
781 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
20607544 CTGCCGTAACCCTTGGTCAATCTGATCTTAGACTGGGAATGAACTCCGCATG
846 CTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20607596 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * *
20607661 CGGCCAGAAGGGCGGGACGTGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
*
20607726 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
20607791 CCCACGAAACGAGCGGATGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCA
196 CCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * ***
20607856 TGGATCGATAGGGTGGTAGGTCGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
20607921 TATGGCTTGTGAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCAGGGCAAGACGAC-
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
20607985 CGGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGG
391 C-GTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
20608050 AAGGAGTTTTGGCCCCAAACTTGGTAGACGGGATCCTTTTATTTTTTTTGGCTTGCACAAAAACA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
20608115 TGT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
520 T-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
20608179 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20608244 CTCGAGGTTTGAT----G--A---GG--AATCT------CAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
20608292 TGTACGCACACCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGCCAGTCAGGTTCTCCGAC
714 TGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * *
20608357 GATGCTCCAACGATGGTGCCCCGACAAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCAT
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
20608422 GTGCTACCGCAACCCTCGGTCCGGTCCGATCATAGACTTGGAATCAACTTCGTATG
843 GTGCTGCCGCAACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20608478 CTTAGACTGGGAATGAAATCCATATGCCTAAATGAACCCATGAAACGAACGTGAGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20608543 CGACCAGAGGGGCAGGG-GGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATC
66 CGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * ** *
20608607 TTGCTACCACAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20608672 ACCGACAAAACGAGCGGGCGGACGGGCAGGCACCACACCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20608737 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
20608802 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * * *
20608867 TCGTTTTTTATTTTTCATGATCTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAG
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * * * * *
20608932 AAGAATTTTTGGCCCAAAACGTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20608997 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
20609062 CACTTTAACGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
20609127 TCTAGGTTTGATGAGGGATATGGGGCCAATGTAAGGGCCAAGTACCAACGCCCATCGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
20609192 GTGCGCACGCCCCCCAGCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
715 GTGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * *
20609256 ATGCTCCGGCGACGATGCCCCGACGAACAAAAATGTGAG-ACCAGCACATGCCCGAGCCTAGCAT
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCAT
* *
20609320 GTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATG
843 GTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20609376 CTTAAAC-GGGAATAAACTCCATATGCCTAAGTCAACTCATGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20609440 CGGCCAGAGGGACGGGATGCGCAAGCCGAGTATCGATCGGGTCCCCCTCTGCGTGCT-ATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * * * *
20609504 CTACTACCGCAACCCTCGGTCCGATCCGATCTTAGGCTGGGAATGAACTCCGCATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20609569 ACCGACGAAATGAGCGGGCGGGCAGACGGACGAGCACTATGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGC--G--GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20609634 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
20609699 ATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCGTCACGTGAAGTTTCTTGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20609764 CGACTCGTTTACTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
20609829 TCGAAAGGAGTTTTGGCCCC-AACTTGGTATACGTGATCCTTGTTTTTTTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
20609893 AAACTTCAGCTAAAAATTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20609958 CAGACACTTTAATGGCTACTGGCAGCAAACCTGT--AA--T----GGCTCTTTAACGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20610015 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACAAA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** ** * * * * * *
20610080 TCATGTACGGACAACCCCCCCGGCCCTCCCGAT-GCCGCCA-GTC-AGGTTCTCCAGT--GATGC
711 TCATGTGCGCAC-A-CCCCCCGGCCC-CCCGATCGTCGGAACCCCAATG-CCGCCGGTCAGGTTC
* * * * *
20610140 CCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCAGCAGCACATGCTCGAGCC
772 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** *
20610205 CAGCATGTGCCACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
837 CAGCATGTGCTGCCGCAACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
20610267 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20610332 AGACCAGAGGGGTGGGATGCGTAAGTCGGGGATCGATCGGGTCCCTCTCTGCGTGCTG-TCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * * * *
20610396 CTACTGCCACAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
20610461 ACCGACGAAACGAGTAGGCGGGCGGGCGGGCGGGCACTGCATCGGCCAGAGAGACGGGTTGCGCA
195 ACCGACGAAAC--G-A-GCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * ** *
20610526 AGCTGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATTTTCATCTTTCTGTGTGGCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20610591 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
20610656 CGACTCGTTTTTTATTTTTCATGATCTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * * * * *
20610721 TCAGAAGAATTTTTGGCCCAAAACGTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20610786 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
20610851 CAGACACTTTGATTGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCTTTAAGAGAGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *** *
20610916 GTTGTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATGCT
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** *
20610981 TTATGTGCGCACACCCCCCTGCCCCCCCGATCGTCGGAACCCCAATGTTGCCGATCAGGTTCT-C
711 TCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** *
20611045 --CG--G----G--GATGGCACCCCG-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
775 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
20611099 CATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAAGTCCGTATG
840 CATGTGCTGCCGCAACCCTCGG-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
20611158 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
20611223 CGGCCAGAGCGGCGGGATGCGCAAGCC-GGGATCGGCCAGGTCCCCCTTTGCGTGCTG-TCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * * * * *
20611286 TGTTGCTGCAACCCTTGGTCCGGTCCGATCTTAGAATGGGAATGAGCTCCGTAT-CCTCAAGCCA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCA
** * *
20611350 ACCGACGAAACGAGC--G-GG-CGGGCGGGCACTAAACCGGCCAGAGAAACGGGATGCGCAAGTC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20611411 GTGGATCGATAGGGTGGTATGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
20611476 TTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * *
20611541 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAATTCGAGATTTTTCAAAATTTTTTCAG
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
20611606 AAGGAGTTTTGGCCCCAAACTTGGTAAAGGTGATCCTTGTAAATTTT-TTGGCATGCACAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAA
** *
20611670 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTAAGACCATTTGAAAAAAGTGTCCCCATTTCAA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20611735 ACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
20611800 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACTAGCACCCACCGCATATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * * * *
20611865 TGTGCGCACATTCCTTCGGCCCCCCCCGATCGTCGAAAACCCGATGCCTCTGGTTAGGTTCT-C-
714 TGTGCGCACA-CCCCCCGG--CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
20611928 -CG--G----G--GATGGTGCCTCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGC
776 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
20611984 ATGTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
841 ATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20612042 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
20612107 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGA-CGGGTCCCCCTCTGCGTGCTACTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * *
20612171 CTGCTATCGTAAACCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
20612236 ACTGATGAAACGAGAGGACGGGCGGGCGGGCACTACGCCAGCCTGAGAGACGGGATGCGCAAGTC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
20612301 GTGGATCGATAGGGTGGTAGTTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATACAATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
20612366 TTATGGCTTGTAAATTAATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
20612431 TTGTTTACTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * * *
20612496 AAGTAATTTTGGCCCCAAACTTGGTATACGTGATCCTTGTCTTTTTTTTAGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * * *
20612561 TTCAACTAAAAAGTCGAGGTGTACAAGATTTTGTGACCATTTGTAAAAAGTGTCCTCAATTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
20612626 CACTTTAGTCGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGGTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
20612691 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACA-TACTAGTACCCATCGCACATCA
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCA
* * * * *
20612755 TGTGCGCACACACCCCTCGGCCCACCCGATCATCGAAACCCTAATGCTGTCGGTCAGGTTCTCC-
714 TGTGCGCACAC-CCCC-CGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * ** * * * * * *
20612819 AGTGATGCTCAGGTGATGGTGCACTGGCGAAGAAAAATACGACACCAGAACATGCCCGAGCCCAG
776 A-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20612884 CATGTGCTACCGCAACCCTCGATTCGATCCGATCTTAGACTAGGAATTAACTCTGTATG
840 CATGTGCTGCCGCAACCCTCG-GTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20612943 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20613008 CGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCG-GCTGGGTCCCCCTTTACGTGCTGTTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCTGATC
* * * *
20613072 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
20613137 ACCGACTAAACGA-------G-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTT
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20613194 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
20613259 TTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAGGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
20613324 TCGTTTTCTATTTTTTAGGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATATTTTT-G
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTTCG
* * * *
20613388 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCAAAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
20613453 ATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20613518 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGATTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
20613583 CTCGAGGTTTGGTGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** ** * * * **
20613648 TGTGCATACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGGT
714 TGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * * * *
20613713 GAAGGTCTGATGACGGTGCCCCTG-CGAAAAAAAATGCGGCACCAGGACATGCCCAAGCCCAGCA
778 GATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
20613777 TGTGCTGTCGCAA--C-C--T---T--GA---T---CT--G-AT---CT--G-AT-
842 TGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20613807 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
20613872 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTG-TCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-GATC
* * *
20613936 CTGCTACCACAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20614001 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACAGGATGGGCAAGCC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
20614066 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
20614131 TTATGGCTTCTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
20614196 TTGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTTGCGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
20614261 AAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATTCTTGTATTTTTGCTGGCATGCACAAAAACA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
20614326 TTCAACTAAAAACTCAAAGTGCACAAGATTTTGTGGCCATTCGAAAAAAGTGTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
20614391 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTC-CTTTTAAGGGGGTGTGAGTT
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTT
* * *
20614455 TTCGAGCTTTGATGAGGGATAGGGGGCCAACATAAGGG-CAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
20614519 TGTGCGCACATCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGG
714 TGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * **
20614584 CGATGCTCCAACGATGGTGCCTC-AGTGAAGAAAAATGAGGCACTAGCACATGCCCGAGCCCAAA
777 CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
20614648 ATGTGCTTCCACAA-CC-C--TCG----G-TC-----C-------G-A-TCCG-AT-
841 ATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20614680 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAATGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20614745 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTATGCGTGCTACTAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
** * * *
20614810 TGCTACCATAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
20614875 CCGATAAAATGAGCGGGCGGACGGGACGGGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATG
196 CCGACGAAACGAGC--G-GG-C-GGAC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
** * *
20614940 CATAAGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
20615005 TGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
20615070 AAGACGACTCGTTTTCTATTTTTCA-G------G--A--TTTT----TT--A-A------AATA-
382 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* *
20615110 TTTTT-GAAAAGGAGTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGC
447 TTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
20615174 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20615239 CATTTCGGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
576 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
20615304 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTAGCACCCATC
641 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * **
20615369 GCACATCATGTGCGCACA----CC-GCCCCCCAATCACCGGAAACCCAAAGCCGTGGGTCAGGTT
706 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * ** *
20615429 CT-CTAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCACCACCAACACATGCCCGAG
771 CTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * **
20615493 CCCAGCATGTGCTGCCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCTATATG
835 CCCAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20615557 CATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20615622 CGGCCAAACAGGTGGGATGCACAAGCCGGGGATCGATCGGGTCCACCTCTGCATGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
20615687 TACTCCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20615752 CCGACGAAACGA----GC--A--GGTGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCTG
196 CCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
***
20615809 TGGATCGATAAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
261 TGGATCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
** * * *
20615873 TTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACAAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
20615938 TCGTGTTCTATTTTTCATGATTTCCAAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGA
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
20616003 AAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
20616068 TTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** * *
20616133 TGCTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
20616198 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCAC
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
20616263 GTGCGCACACCCCCTGGCCCCCCTATCGTCAGAACCCCAAAGCCGGCGGTCAGGTTCTCCGATGA
715 GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* *
20616328 TGCTCCGACGATGGTGCCCCGACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGT
780 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * ** *
20616393 GCTGTCGTAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCACAGG
845 GCTGCCGCAACCCTC-GGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20616447 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGCGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20616512 CGGCTAGAAGGGTGGGACGTGCATGCCGGGGATCGA-CTGGGTCCCCTTCTGTC-TGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTG-CGTGCTGCTGAT
* * * *
20616575 CCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCC
129 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
20616640 AACCCACGAAACGAGCGGGCTGG-CGGGTGGGCACTACGCCGGCTAGAGAGACTGGATGCGCACG
194 AACCGACGAAACGAGCGGGC-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
20616704 CCGTGGATCGATAGGGTGATAGGTCGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20616769 TTTTATGGCTTGTGAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * *
20616834 ACTCGTTTTCTATTTTTCAAGATTTTTGAAAGTTTTTGCGCTTTGAGATTTTTTTAAATTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
20616899 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGCCATGCACAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
20616964 CATTTAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20617029 GACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20617094 TCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
20617159 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGTCGGTCAGGTTCTCCGA
713 ATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * *
20617224 TGATGCTCC-AGTGATGGTGCCCCGACAAAGAAAAAAGTGGCACCAGCACATGCCCAAGCCCAGC
777 CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
20617288 ATGTGCTGCCGTAACCCTCGGTCCGATCCAATCATAGACTTGGAATGAACTCCGTATG
841 ATGTGCTGCCGCAACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20617346 GTTAGACTGGGAATAAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGAGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20617411 CGGCCAGAGGGGTGGGATACGCAAGCCGAGGATCGA-CAGGGTCCCTCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCTGATC
* ** * * * *
20617475 CTGCTGCCTTAACCCTCGGTCTGGTCTGACCTTAGACAGCGAATGAACTTCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20617540 ACCGATGAAACGAGC-GGC---CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
20617601 GTGAATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTTTGCATGCCAATGCAATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * * *
20617666 TTATGGCTTTTAAATTCATAAAATGGTCCCTTAAGACTTCACATCAAGTTTCATGGCAAGACGAG
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
20617731 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCG
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
* * *** * * *
20617795 AAAGGAATTTTTTTTCCCAAACTTGGTAGACGTGATCGTTGTATTTTTTTTGGCAAGCACAAAAA
454 GAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
20617860 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
20617925 GACACTTTAATGGCTACTGGTAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
20617990 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * *
20618055 ATGTGCGCACACCCCCC-GCCCCCCGATCACCAGAACCCCACTGCCGTCGGTCAGG---T-----
713 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** * * * *
20618111 --T-CTCCGACGATGGTGCGCCGGTGAAGAAAAATACAGCACCAGCACATGCTCGCGCCCAGCAT
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
20618173 GTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20618229 -TATAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAG
1 CT-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20618293 CCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-GCTGGGTCCCCCTCTACATGCTG-TCGA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCT-GA
* * * * * *
20618356 TCTTGCTGCCGGAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
128 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
20618421 C-ACCGAATGAAATGA----GCGGACGGGCGGGCACTACGCCGGCCAAAGGAGACGGGACGCAGC
193 CAACCG-ACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGA-GAGACGGGATGC-GC
* * *
20618481 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGAGCAAATCTTCACATTTTTGCATGCCAATG
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAATG
*
20618546 CCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAG--TTCACGTGAAGTTTCATGGTAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
20618608 GGACGACTCGTTTTCTAATTTTTTCACGTGAAGTTCATGGCCAAGCGACTTGTTTACTATTTTTC
384 -GACGACTCGTTTTCT-A-----T----T----TT--T-------C-AC--G------A-TTTTC
*
20618673 ATGATTTTTTGAAACTTATTTACAGGTTCGAGATTTTTT-AAACTTTTTCGGAAGGCAGTTTTGG
415 ----------GAAACTT-TTTAC-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGG
* * * *
20618737 ACCCAAACTTGGTAGACG-GGTCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
467 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * *
20618801 CTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATTCCAAACACTTTAGTGGC
532 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
20618866 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
597 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
20618931 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCC
662 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * *
20618996 CCTCAGCCCCCCCGATCGCCAGAACCCCAATGTCGCCGGTTAGGTTCTCCGGCGATGCTCCTACG
727 CC-C-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * *
20619061 ATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAA
790 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
20619126 --C-C---C-A--CGGTC-----C--GG--T----T-CG-A-C
855 CCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20619144 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20619209 CGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCCTGTTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
20619274 TGTTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20619339 CCGATGAAACAGGCAGGCGGGC-GAGCGGGCAGGCACTACGCCGGCCAGAGAGATGGGATGCACA
196 CCGACGAAAC--G-A-GCGGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
20619403 AGCCATGGATCGATAGAGTGCTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20619468 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
20619533 TGACTCGTTTTCTATTTTTCAAGATTTTCGCAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
20619598 TTGCAATGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20619662 AAAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20619727 CAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20619792 GTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20619857 TCATGTGCGCACACCCCCCCCGGCCCCTCTGATCG-CAGGAACCCCAATGCCGCCGGTCAGGTTC
711 TCATGTGCGCACA--CCCCCCGGCCCC-CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
** * * *
20619921 TCCGACGATGCTCCGGTGACGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCC
772 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
20619986 CAGCATGTGCTGTCACAGCCATCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTAAG
837 CAGCATGTGCTGCCGCAACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20620048 CTTAGA-TAGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
20620112 TCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGATC-AGTCGGGTCCCCCTCTGCGTGCTG-TCGA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCT-GA
* * * * *
20620174 TCTTGCTACTGCAACCCTCAGTCCTGTTC-GATCTTAGACTGGGAGTGAACTCCGTATGCCTAAG
128 TCCTGCTACCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** ** *
20620238 CCAACCGACGAAAC-A---AGTGGACGGGCGGACACTATACCGGCCAGAGAGATTGGATGCACAA
192 CCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * ***
20620299 GCCGTGGATCGATAGGGTGGCATGCGGGTTCT-GCCACATCTTCATATTTCTATGTGCCAATGCC
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20620363 ATTTTTATGGCTTGTAAAATGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
20620428 TGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
20620493 TTGGAACGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20620558 AAAATTAAGCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
20620623 TAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAAAGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20620688 GTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATGAGGGCCAAGTACCAG-ACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
20620752 TCATGTGGGCACACCCCCCTAGGCCCCCCCGATTGCCGGAACCCTAATGCTGCCGGTTAGGTTCT
711 TCATGTGCGCACACCCCCC--GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * * * *
20620817 AAGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCC
773 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
20620882 AACATGTGCTGCC-AAAACC-C--TCG----G-TC-----C---G---G---TCCG-AT-
838 AGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20620917 CATAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20620982 CGGCCAG-GGGGCGGGATGCGCAAGCTGAGAATCGATCGGGTCCCCCTCTCCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
20621046 TGCTACCGCAACCCTCGGTCTGGTCCT-ATCTTTGATTGGGAATAAACTCCGTATGCCTATGCCA
131 TGCTACCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20621110 ACCGACGAAACGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAACCC
195 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20621171 GTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCAATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
20621236 TTATGGCTTGTAAATTAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
20621301 TCGGTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
20621366 AATGTGTTTTGGCCCCAAACTTGGTCGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
20621431 TTCACCTAAAAAC-CGAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 TTCAGCTAAAAACTCG--AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20621495 GACACTTTATTGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20621560 TCTCGAGGCTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** **
20621625 ATGTGCGCACACCCCCCCGAGCCCCCCGATCGTCGGAATCATAATGCCGCCGGTCAGGTTCT-TT
713 ATGTGCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** ** *
20621689 AGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAG
776 A-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
20621754 CATGTGTTGCCGCAAGCCTCGGTTCGATCCAATCTTAGACTAGGAATGAACTCCGTATG
840 CATGTGCTGCCGCAACCCTCGG-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20621813 CTTAGACTGGGAATGAACACCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
20621878 C-GCCAGAGGGGAAGGATGCGCATATGCCGGGGATCTCGGTCGAGT-CCCCTCCTACGTGCTGC-
66 CGGCCAGAGGGGCGGGATGCGCA-A-GCCGGGGA--TCGATCGGGTCCCCCT-CTGCGTGCTGCT
* ** * * *
20621940 CATTCCTATTTGCCGTAACCGCTCAAGGTCCTGGATCTGATCATTAGACTGGGAATGGGACTCCG
126 GA-TCCT-GCTACCGCAACC-CTC--GGT-CTGG-TCTGATC-TTAGACTGGGAAT-GAACTCCG
* *
20622005 TATGGCCTAAGCCAACCGACGAAACGAGCTGGGCGG-TGCGGCAGGGCAAGGCCAATTACGCTGG
182 TAT-GCCTAAGCCAACCGACGAAACGAGC-GGGCGGACG-GGC-GGGC-A---C---TACGCCGG
* * *
20622069 CC-GAAGAGATTGGGATGCGGTAAGCCGTGGGATCGATAGGGTGGTAGGTGGGTTTAGTCCACAT
236 CCAG-AGAGA-CGGGATGC-GCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAG-GCACAT
20622133 CTTCATTATTTCTGCATGCCCAATTTG-CATTTTTATGGCTTGTAAATTCATACAATCGG-CCCT
296 CTTCA-TATTTCTGCATG-CCAA--TGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCT
*
20622196 TAACCCTTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTAATTTTT-ACG-TTTCTCGAA
356 TAAGCC-TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTT-TCGAA
* * * **
20622258 ACTTTGTTACGGTTTGGGATTTTTTCAAAATTTTTTTGGAA-GAG-TTTGGCCCCAAACTTTTTA
418 ACTTT-TTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
20622321 GATGTTATCCTTGTATTTTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTGCAA
481 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
20622385 GATTTTGTGACCATTTCAAAGAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAGAC
546 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
20622449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
611 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
20622514 CAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
676 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGA
* * * * * * * *
20622579 TCGTCGGAACCCCAACGTCGTCGGTTAGGTTCTCCGATGATGCTTCGGCGATGGTGCCCTGACGA
740 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * ** * *
20622644 AGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTTTTGCTGTAA----C---C-AT-CG
805 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGATCCG
20622700 ATC-----C---G---G---TCCG-AT-
870 ATCTTAGACTGGGAATGAACTCCGTATG
* * *
20622712 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
20622777 CGGCCAGA-GGGCTGGGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
66 CGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
** * * *
20622841 CTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20622906 ACCGACGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACACCGGCCAGAGATAAGGGATGTGCA
195 ACCGACGAAACGAGC----GGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ***
20622971 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20623036 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTAAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20623101 CGACTCGTTTTCTATTTTCCACAATTTT-TAAAATTTTTACGGTTC-AGGATTTTTTAAAATTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* * * *
20623164 TTTGGAAGTATTTTTGGCCCAAAACTT
450 TTCGGAAGGAGTTTTGGCCCCAAACTT
20623191 TTTTAGATGT
Statistics
Matches: 15034, Mismatches: 1859, Indels: 1005
0.84 0.10 0.06
Matches are distributed among these distances:
850 1 0.00
851 95 0.01
852 4 0.00
853 3 0.00
855 2 0.00
856 2 0.00
857 217 0.01
858 39 0.00
860 160 0.01
861 11 0.00
863 1 0.00
864 185 0.01
865 3 0.00
866 3 0.00
867 2 0.00
868 28 0.00
869 614 0.04
870 258 0.02
871 84 0.01
872 545 0.04
873 211 0.01
874 46 0.00
875 274 0.02
876 281 0.02
877 445 0.03
878 136 0.01
879 71 0.00
880 125 0.01
881 567 0.04
882 811 0.05
883 358 0.02
884 205 0.01
885 335 0.02
886 131 0.01
887 29 0.00
888 22 0.00
889 99 0.01
890 841 0.06
891 408 0.03
892 507 0.03
893 599 0.04
894 66 0.00
895 578 0.04
896 579 0.04
897 818 0.05
898 737 0.05
899 456 0.03
900 181 0.01
901 602 0.04
902 24 0.00
903 546 0.04
904 91 0.01
905 10 0.00
906 194 0.01
907 14 0.00
908 12 0.00
909 24 0.00
910 2 0.00
912 2 0.00
913 3 0.00
914 3 0.00
915 181 0.01
916 12 0.00
917 9 0.00
918 2 0.00
919 1 0.00
920 59 0.00
921 43 0.00
922 41 0.00
923 51 0.00
924 11 0.00
925 134 0.01
926 157 0.01
927 278 0.02
928 79 0.01
929 118 0.01
930 73 0.00
931 19 0.00
933 1 0.00
935 1 0.00
938 1 0.00
939 1 0.00
940 1 0.00
941 61 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20610277 original size:26 final size:26
Alignment explanation
Indices: 20610241--20610293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20610231 CCGATCCGAT
20610241 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20610267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20610293 C
1 C
20610294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20611162 original size:26 final size:26
Alignment explanation
Indices: 20611125--20611184 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
20611115 CCTCGGTTCG
20611125 GTCCG-AT-CTTAGACTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
20611149 GTCCGTATGCTTAGACTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
*
20611175 CTCCGTATGC
1 GTCCGTATGC
20611185 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
GTCCGTATGCTTAGACTGGGAATGAA
Found at i:20612052 original size:26 final size:26
Alignment explanation
Indices: 20612016--20612068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20612006 CTGGTCCGAT
*
20612016 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20612042 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20612068 C
1 C
20612069 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20612508 original size:890 final size:889
Alignment explanation
Indices: 20597294--20623190 Score: 29248
Period size: 896 Copynumber: 29.1 Consensus size: 889
20597284 AAATTCATAC
* * *
20597294 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * *
20597359 TTTCAAAACTTTTTACGATTCTGGATTTTTTAAAATTTTTTCTAAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * * * *
20597424 TGGTAGATGTGATCCTTGGATTTTTTTTGGGATGCACAAAACAATTCAGCTAAAAACACGAAGTT
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
20597489 TACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCA-ATCACTTTAATGGCTACTGACA
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCA
* * * *
20597553 GTAAATCTGTAAAATCTCAAATGCTCTTTAAGAGGGTG-GAGTTCTTGAGGTTTGATGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
20597617 GGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCAGGTGCGCACACCCCCCGCCCC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* *
20597682 CCCCGATCATCGGAACCCCAATGCCGT-CGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
390 CCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCC-GC---G----G-CGATGGTGCC
* * * *
20597746 CTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
445 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
20597811 CTGGTACGATCTTAGATTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
510 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
20597876 AAGTCAACCCATGAAACGAGCGTGCGGGCGGTCAGCCAGCCAGAGGGGCGGGATGCGAAAGCCGG
575 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * ** **
20597941 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGTAACCCTCAGTCCAGTCCAAT
640 GGATC-GACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* * ** * * * *
20598006 CATAGACTGGGAATTAACTCTATATGCTTAAGACAACCGACGAAATGA-A--GCAGGCGGGCGGG
704 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGG
* * * *
20598068 CACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTTCAA
769 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*** *
20598133 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATAC
834 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* ** *
20598189 AATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAC
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * * * * * * *
20598254 TTTCAAAAATTTTTGCGGTTTGGAATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAGCT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
20598319 TGGTAGACGTGATCCTTGTATTTTTTTTTTTGCATGCAAAAAAAAATTAAGCTAAAAACTCGAAG
131 TGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
20598384 TGTACAAGATTTTGTGA-CATTTGAAATAAGTGTCCCCATTTCAGACACTTTAAAGGCTGCTGGC
194 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
20598448 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
259 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * * *
20598513 AGATGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTATGCACACCCCCCCCGG
324 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--TGCGCACACCCCCCGG
* * * * * *
20598578 -CCACCCGATCGCCAGAACCTCAATGCCAT-CGGTCAGGTTCT-C-CGACGATGGTGCCCCGATG
387 CCCCCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACG
* ** * *
20598639 AAGAAAAATGCGGCACCAGCACATGCCCCAGCGTAGCATGTGCTACCACAA--C-C---C---T-
451 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* *
20598694 CGA--TT---C--GG--T---C--CG-AT-CTTAGACTGGCAATGAACTTCGTATGCCTAAGTCA
516 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
20598743 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCG
581 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** *
20598808 ACCGGGTCCCCCTTTACGTGCTGTTGATCCTGCTGCCGCAACCCTCAATCTGGTCCGATCTTAGA
646 A-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * * *
20598873 -TGGGGAAAGAACTCCGTATGCCTAAGCCAA-CAACGAAATGAGTGGGCGGGCGGGCGGGAAGGC
710 CT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GAGGGCGGGC--G--GGC
** * *
20598936 GGGCACTACGTTGACGAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
766 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
20599001 TAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
831 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20599060 AATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACCCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
20599125 TTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * *
20599190 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGTA-AAAAAAATTCAGCTAAAAACGCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
20599254 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
20599319 CAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20599384 GGGACCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
20599449 CCCGATCGCCAGAACCCCAATGCCAT-CGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTTCCC
391 CCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCC------G---CGGCGATGGTGCCC
* * * *
20599513 CGACGAAGAAAAATACGGCTCCAGTATATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C
446 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
20599572 ---TCAG-TC-----C-------G-A-TTCG-AT-CTTAGACTGGGAATGAACTCCGTATGACTA
511 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * * * * * *
20599617 AGTCAACTCACGAAACGAGCGTCCGGGCATTCAGTCAGCTAGAGGGGTGAGATGCGCAAGTCGGG
576 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * ** *
20599682 GATCGACTGGTCCCCCTCTGCGTGCTGCTGATCTTGCTATCATAACCCTCGATCTGGTCTGATCT
641 GATCGACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCT
* * * * **
20599747 TAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC--GA--GCAGGCGGGTAGGCA
706 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCA
** * *
20599808 CTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTC
771 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
20599873 ACATCTTCATAATTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
836 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20599927 AATGGTCCGTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
20599992 TTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * *
20600056 TTGGTAGACGTGATCCTTGTAATTTTGGTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
20600121 GTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
20600186 GCAAACC-GATAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGAT
260 GCAAACCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
20600250 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCCCG
324 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCG
* *
20600315 GCCCCCCCGATCG-CTAGAAGCCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCTGGCGATG
386 GCCCCCCCGATCGTC-GGAACCCCAATGCC-TCCGGTCAGGTTCT-C--C---G--C-GGCGATG
* * *
20600378 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC
440 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * ***
20600443 TCGAT-TCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAAAAATGAACTCCGT
505 TCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
20600507 ATGCCTAAGCCAACCCAAGAAACAAGCGGGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCA
569 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * *
20600572 AGCCGTGGATCTGGCTGGCTCCCCCTCTGC--G-TGCTG---C--C-A---TAACCCTCGGTCCG
634 AGCCGGGGATC-GAC-GGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTG
* * * * * *
20600625 ATC-CACCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--ATA-AGCGGGC
697 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGC
* *
20600685 -GGC---CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTGGGTG
762 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
20600746 GGTTTAGGCACATCTTCATATTTCTGCA--CCAATGCCATTTTTATGGCTTGTAAATTCATAC
827 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
20600807 AATTGTCCCTCAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCCTTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * *
20600872 TTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* *
20600937 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTA-AAAAAAATTTAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
20601001 TACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
20601066 CAAACTTGCAAAATCTCAAATGCTC-TTCAGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
20601130 GGGGCCAATATAAGGGCCAAGT-TCAGCACCCATCACACATCATGTGCGCACACCCCTCCGGCGC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC
* *
20601194 CCCCTATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCC
390 CCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCT-C--C---G---CGGCGATGGTGCCC
* * * * * *
20601259 CGACAAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCAGCCGTAACCCTTGGTC
446 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
** * *
20601324 CAGTCCGATCTTAGACTGGGAATGAACTTCGTACGGTTAGACTGGGAATGAACTCCGTATGCCTA
511 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
20601389 AGCCAACCCTCGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGTGGGATGTGCAAGCCGGG
576 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** * * * * * * **
20601454 GATCTACCGGTTCCCTTTCTGCGTGCTGCCGATTCTACTGCTGCAACCCTTGGT-TCGGTCCAAT
641 GATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCT-GGTCTGAT
*** * * * *
20601518 CTTAGACTACAAATGAGCTCCGTATGCCTTAGCCAACAGACGAAACGAGCGGGCGGGCAGGCAGG
704 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGC--G--GG
* * * *
20601583 CGGGCATTACTCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGT
765 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
20601648 TTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
830 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * *
20601708 AATGGTCGTTTAAGCCTTCACGTTAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* ** * * * * **
20601773 TTTTTAAACTTTTTGTGGTTCGAGATTTTTTAAACTTTTTTCAAAAGGATTTTTGGTGCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * *
20601838 TGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
20601903 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTCAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
20601968 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGCTGTGAGTTCTTGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20602033 GGGGCCAATATAAGGGCCAATTACCAGCACCCAACGCACATCATGTGCGCACACCCCCCGGCCCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
20602098 CCCGATCGTCGGATCCCC---G--T-CGGTCAAGTTCTCTGGCGATGGTCCGACGATGGTGCCCC
391 CCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTC---C----G--CGGCGATGGTGCCCC
* * ** *
20602157 GACGAAGAAAAATACGGCA-CAGCACATGCCCTAGCCCAGCATGTGCTGCCGCAACAATCGGTCC
447 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * *
20602221 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTATGCCTAA
512 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * **
20602286 GTCAACCAACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAAGATGCGCAAGCCGGGG
577 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * * * * *
20602351 ATCGACCGAGTCCCCCTCTGCATGCTACCAATCCTGCTGCTGTAACCCTCGATCTGGTTTGATCT
642 ATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCT
* * * * *
20602416 TAGACGGGGAATGAACTCTGTGTGCCTAAGCCAACCGACGAAATGAGTGTACGGGCGGACGGGCG
706 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--G-A-GGGCGGGCGGGCG
* * *
20602481 GGCCCTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTT
767 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
20602546 AGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACTTGTAAATTCATAC
832 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20602604 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** ** * *
20602669 TTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * *
20602734 TGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* **
20602799 TACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTGG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
20602864 CGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTGGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** *
20602929 GGGGCCAATATAAGGGCCAAGTACCAGAACCCATCATAGATCATGTGCGCACACCCCCACGGCCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCC
* * *
20602994 CCCCGATCGCCAGAACCCCAATGTCGT-CGGTCAGGTTCTCTGGCGATGCACCGGCGATGGTGCC
390 CCCCGATCGTCGGAACCCCAATG-CCTCCGGTCAGGTTCTC---C---G---CGGCGATGGTGCC
* * * * * * *
20603058 CCGGCAAAGAAAAATGCAGCACCAGCACCTGGCCGAGCCCAGCATGTGCTGCCGTAACCTTCGGT
445 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
20603123 CCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
510 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * *
20603188 AAGTCAACCCACGGAACGAGCGTTCAGGCGCTCAGCAGGCCAAAGGGGCGCGATCCGCAAGTCGA
575 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * ** * **
20603253 GGATCGATCGGGTCCCCCTCTACGTGCTG-TCGATCTTGCTACCGCAACCCTCAATCTAGTCCAA
640 GGATCGA-CGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* ** * *
20603317 TCTTAGATTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACGAGCGGGGGGGACGGCGG
703 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GAGGGCG--GGCGG
* * *
20603382 GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGACGTGGATCGAT-GGGTGGTAGGTGGG
764 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
20603446 TTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATAC
829 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20603507 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
20603572 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCTAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * *
20603636 TTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
20603701 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGTA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
20603766 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGGGAGTTCTCAAGGTTTGATGTGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
20603831 GGAGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTGG-CC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * *
20603895 CCCCGATCGTCGGATCCACAAAGCCGT-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
390 CCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCC-GC---G----G-CGATGGTGCC
*** * * * *
20603959 CCGGTAAAGAAAAAAGCGGCACCAGCACATGCTCGATCCCAGCATGTGCTGCTGCAACCCTCGGT
445 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
20604024 CCGGTCCGATCTTAGACTGGGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATGCCT
510 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
20604089 AAGTCAACCCACGAAATGAGCTTACGGGCGCTCAGCCGGCCAGA-GGGCAGGATGCGTAACCCGG
575 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * ** *
20604153 GGATCGACTGGGTCCCCCTCTGCGTGCTACCGAT-CTCGCTGCCCCAACGCTCGATCCAGTCTAA
640 GGATCGAC-GGGTCCCCCTCTGCGTGCTGCTGATCCT-GCTACCGCAACCCTCGGTCTGGTCTGA
*
20604217 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA-ACGGGCGGGCGGGGG
703 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA-GGGCGGGC---GG
* *
20604281 AGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGG
764 -GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
20604346 GTTTAGGCACATCTTCATATTTCTACGTGCCAATCCCATTTTTATGGCTTGTAAATTCATGC
828 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
20604408 AGTGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACT-GATTTTCTATTTTTCACGA
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCATGA
* * * * *
20604472 TTTTTGAAAATTTTTGCGGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGCCCCCAAAC
65 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
*
20604536 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
20604601 GTACAAGATTTTGTGACCATTT-CAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20604665 GCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *** *
20604730 GGGGGCCATTACAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGTACACCACCCCCGG-
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGC
** * * *
20604794 CCCCTTGATCATCAGAACCCCAATGCCGT-CGGTCAGGTTCT-C-CGACGATGGTGCCCCGACGA
388 CCCCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACGA
* *
20604856 AGAAAAATACGGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---
452 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* *
20604912 G---TT---C--GG--T---C--C-AAT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
517 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
20604960 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGG-TGCGCAAGCTGGGGATCG
582 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GGATGCGCAAGCCGGGGATC-
*** * * * *** *
20605024 GTTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTTGGTCCAATCCGATCTTAGA
645 GACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * * * * *
20605089 CTGGGAATGAACTCTGTTTGCCTAAGCCAGCCGACGAAAC--GA--GCAGGTGGGCGGGCACCAC
710 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTAC
* *
20605150 GCCGGCCCGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
775 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20605215 CTTCATATTTCTGCATGCCAATTCCATTTTTAAGGCTTGTAAATTCATAC
840 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20605265 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCGTTTTGTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * * *
20605330 TTTCAAAAATTTTTGA-GTTTCGAGATTTTTTTAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAA
66 TTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAA
* *
20605393 CGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAA
129 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAA
*
20605458 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGG
193 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
20605523 AAGCAAACCTGCAAAATCTCAAATGC-CTCTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGG
258 CAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
20605587 ATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCGA
322 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * * *
20605652 CCCCCCCGATC-ACTGGATCCCCAATGACGCCGGTCAGGTTCTCGATGATGCTTCGACGATGGTG
387 CCCCCCCGATCGTC-GGAACCCCAATGCCTCCGGTCAGGTTCTC-------C-GCGGCGATGGTG
* * * ** * * *
20605716 CCCTGACAAAGAAAAATGCCGCACCAGCACATGCTTGAGCCCAGCATGTGCCGTCGTAA-CC-C-
443 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
20605778 -TC--G---G----T---CT--G-AT----TT-G-AT-CTTAGACTGGGAATGAACTCCGTATGC
508 GTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
*
20605820 CTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
573 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * *
20605885 GGGGATCGGTCGAGTCCCCCTATGCGTGCTG-TCGATCCTGCTACCACAACCCTCGGTCTGATCT
638 GGGGATC-GACGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCT
* * * * *
20605949 GATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAACCGATTAAGCAAGCGGGCA-GGCGGG
701 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG---ACG-AAACGAG-AGGGCGGG
* * *
20606013 TGGGCGGGCACTACG-TGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
761 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
20606077 GAGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATAC
826 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20606141 AATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * *
20606206 TTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGATTTTTGGTCCCAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* *
20606270 TTGGTAGACGTGATCCTTGTAATTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
20606335 GTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACTGGCA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
20606400 GCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAAGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
20606465 GGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACGTCATATGCGCACACCGCCCCCCCG
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCCCCG
* ** * * * *
20606530 GCCCCCTCGATCACCGAAAACCCAATGCCACGGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
386 GCCCCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCC-GC---G----G-CGATGGT
* * * ** * *
20606595 GCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTGGAAACCCCC
442 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
20606660 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
507 GGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20606725 CCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTTAGCCGGCCAGACGGGCGGGTTGCGCAAGC
572 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** *
20606790 TGGGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTACCACAACCCTCGGTCTGGTCT
637 CGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCT
* * * * * * * ** *
20606855 GATCTTAGACTGGCAATGAGCTTCGTATGACTAAGCCAACCGATGAAATGAGCGAACGGACGGGC
701 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGC
* * * *
20606920 GGGCACTATGCCGGCCAAAGAGAAGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
766 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
20606985 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
831 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20607044 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
*** * * * *
20607109 TTCCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * *
20607174 TGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
20607239 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
20607304 CAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCGCAAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
20607369 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCCCCTGG-CCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
20607433 CCCAATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGATGATTCTCCGACGATGGTGCCCC
391 CCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCC---G------CGGCGATGGTGCCCC
* * *
20607498 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTC-
447 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
** * * *
20607562 AATCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
512 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
20607627 GTCAACCCACGAAATGAGCGCGCGGGCACTTAGCCGGCCAGAAGGGCGGGACGTGCAAGCCGGGG
577 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *
20607692 ATCGGCCTGGTCCCCCTCTGTGTGCTGTTGATCTTGCTACCGCAACCCTCGGTCCGGTCTGATCT
642 ATC-GACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCT
* * **
20607757 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGATGGGCGGGCGGGCA
706 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCA
* * * *
20607822 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTCGGTCTAGGC
771 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** *
20607887 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGAATTCATAC
836 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20607941 AATGGTCCCTTAACCCTTCACGTGAAGTTTCAGGGCAAGACGAC-CGGTTTTCTATTTTTCAAGA
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCATGA
* * * *
20608005 TTTTTGAAACTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
65 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * * * *
20608070 TTGGTAGACGGGATCCTTTTATTTTTTTTGGCTTGCACAAAAACATGT-AGCTAAAAACTCGAAG
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGCTAAAAACTCGAAG
*
20608134 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
194 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
20608199 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--
259 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
20608258 A---GG--AATCT------CAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCC
324 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
** * *
20608312 CCCCCGATCGTCGGAACCTTAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCC
389 CCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCG-CG--G------CGATGGTGCC
* * * * *
20608377 CCGACAAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
445 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
20608442 CCGGTCCGATCATAGACTTGGAATCAACTTCGTATGCTTAGACTGGGAATGAAATCCATATGCCT
510 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
20608507 AAATGAACCCATGAAACGAACGTGAGGGCGCTCAGCCGACCAGAGGGGCAGGG-GGTGCAAGCCG
575 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCG
* * * * * * **
20608571 GGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATCTTGCTACCACAACCCTCGGTCCGATCCAA
639 GGGATC-GACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* * * * *
20608636 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGACGGGCAG
703 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGG
* *
20608701 GCACCACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
768 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20608766 GGCACATCTTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATAC
833 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20608823 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTTTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * * * *
20608888 CTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTTTC-AGAAGAATTTTTGGCCCAAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * * * * *
20608952 GTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTTGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
20609017 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGGCTACTGGAA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
20609082 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCTAGGTTTGATGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * * *
20609147 TGGGGCCAATGTAAGGGCCAAGTACCAACGCCCATCGCACATCATGTGCGCACGCCCCCCAG-CC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * *
20609211 CCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGACGATGCC
390 CCCCGATCGTC-GGAACCCCAATGCCTCCGGTCAGGTTCT-C--C---G---CGGCGATGGTGCC
* * *
20609275 CCGACGAACAAAAATGTGAG-ACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
445 CCGACGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
20609339 TCTGATCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAAAC-GGGAATAAACTCCATATGC
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
20609402 CTAAGTCAACTCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGACGGGATGCGCAAGCC
573 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
20609467 GAGTATCGATCGGGTCCCCCTCTGCGTGCT-ATCGATCCTACTACCGCAACCCTCGGTCCGATCC
638 GGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCT
* * * *
20609531 GATCTTAGGCTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGAC
701 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGC-G--
* *
20609596 GGACGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
763 GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
20609661 GGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
827 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20609724 AATGGTCCCTTAAGCCGTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTACTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
*
20609789 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC-AACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * * *
20609853 TGGTATACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTTGAACTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
20609918 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
20609983 CAAACCTGT--AA--T----GGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
20610040 GGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACAAATCATGTACGGACAACCCCCCCGGCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCC
* ** * * * * *
20610105 CTCCCGATGCCGCCAGTCAGGTTCTCCAGTGATGCC-CC-GAC-GATGCT-C-CGACGATGGTGC
389 CCCCCGAT-----C-GTC-GGAACCCCA---ATGCCTCCGGTCAGGTTCTCCGCGGCGATGGTGC
* * * * **
20610165 CCCGGCGAAGAAAAATACGGCAGCAGCACATGCTCGAGCCCAGCATGTGCCACCGCAACCCTCGG
444 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
20610230 TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
20610295 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGACCAGAGGGGTGGGATGCGTAAGTCG
574 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
20610360 GGGATCGATCGGGTCCCTCTCTGCGTGCTG-TCGATCCTACTGCCACAACCCTCGGTCTGGTCAG
639 GGGATCGA-CGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCTG
*
20610424 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGGCGGGCG
702 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-A---GGGCGGGCG
* ** * * *
20610489 GGCGGGCACTGCATCGGCCAGAGAGACGGGTTGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGA
763 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** *
20610554 GTTTAGGCACATTTTCATCTTTCTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATAC
828 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20610616 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTTTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * * * *
20610681 CTTCGAAAGTTTTTACGGTTTGGGATTTTTTTAAATTTTTTC-AGAAGAATTTTTGGCCCAAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * * * * *
20610745 GTGGTGGGCATGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTTGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
20610810 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATTGCTACTGGCA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * * *
20610875 GCAAACTTATAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTGTCGAGCTTTGATGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*** * * *
20610940 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATGCTTTATGTGCGCACACCCCCCTGCCC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * **
20611005 CCCCGATCGTCGGAACCCCAATG-TTGCCGATCAGGTTCTCCG-GG-GATGGCACCCCG-CGAAG
390 CCCCGATCGTCGGAACCCCAATGCCT-CCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACGAAG
*
20611066 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-TCGGTCCG
454 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCG
* *
20611130 ATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
518 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
20611195 CCACGAAACTAGCGTGCGGGCGCTCAACCGGCCAGAGCGGCGGGATGCGCAAGCC-GGGATCGGC
583 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GA
* * * * * * * * * *
20611259 CAGGTCCCCCTTTGCGTGCTG-TCATCCTGTTGCTGCAACCCTTGGTCCGGTCCGATCTTAGAAT
647 CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* **
20611323 GGGAATGAGCTCCGTAT-CCTCAAGCCAACCGACGAAAC--GA--GCGGGCGGGCGGGCACTAAA
712 GGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACG
* * * *
20611383 CCGGCCAGAGAAACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTATGTGGGTTTTGGCACATC
776 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
20611448 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAAC
841 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
20611497 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * *
20611562 TTTTGAAACTTTTTACAATTCGAGATTTTTCAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * *
20611626 TTGGTAAAGGTGATCCTTGTAAATTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
130 TTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
** * *
20611690 TGTACAAGATTTTAAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCGACTGGC
194 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
20611755 AGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
259 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * * **
20611820 AGGGGGCCAATATAAGGGCCAAGAACTAGCACCCACCGCATATCATGTGCGCACATTCCTTCGGC
324 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-
* * * * * *
20611885 CCCCCCCGATCGTCGAAAACCCGATGCCTCTGGTTAGGTTCTCCG-GG-GATGGTGCCTCGACGA
387 CCCCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACGA
* * * *
20611948 AGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCC
452 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
20612013 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
517 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
20612078 CCCACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGG
582 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * * * *
20612143 ACGGGTCCCCCTCTGCGTGCTACTGATCCTGCTATCGTAAACCTCGGTCTGATCTGATCTTAGAC
646 ACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
20612208 TGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGAGGACGGGCGGGCGGGCACTACG
711 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACG
* * * * *
20612273 CCAGCCTGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGTTGGGTTTTGGCACATC
776 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
20612338 TTCATATTTCTGCATGCCAATACAATTTTTATGGCTTGTAAATTAATAT
841 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20612387 AATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTTGTTTACTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
20612452 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGTAATTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * * * *
20612517 TGGTATACGTGATCCTTGTCTTTTTTTTAGCATGCACAAAAAAATTCAACTAAAAAGTCGAGGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
20612582 TACAAGATTTTGTGACCATTTGTAAAAAGTGTCCTCAATTCAGACACTTTAGTCGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
20612647 CAAACCTGAAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGGTCTTGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20612712 GGGGCCAATATAAGGGCCACA-TACTAGTACCCATCGCACATCATGTGCGCACACACCCCTCGGC
326 GGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGC
* * * * * *
20612776 CCACCCGATCATCGAAACCCTAATG-CTGTCGGTCAGGTTCTCCAGTGATGCTCAGGTGATGGTG
388 CCCCCCGATCGTCGGAACCCCAATGCCT-CCGGTCAGGTTCTCC------G--C-GGCGATGGTG
* * * * * * *
20612840 CACTGGCGAAGAAAAATACGACACCAGAACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
443 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
20612905 AT-TCGATCCGATCTTAGACTAGGAATTAAC-TCTGTATGCTTAGACTGCGAATGAACTCCGTAT
508 GTCT-GGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
20612968 GCCTAAGTCAACCCACGAAATGAACATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAG
571 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * *
20613033 CCAGGGATCGGCTGGGTCCCCCTTTACGTGCTGTTGATCCTGCTGCCACAACCCTCGGTCCGGTC
636 CCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTC
* *
20613098 TGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACTAAAC--GA------GCGGG
700 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGG
* ** *
20613155 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCAATAGGGTGGTAGGTGGGT
765 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
20613220 TTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
830 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
20613280 AATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTTAGGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** **
20613345 TTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATATTTTT-GAAAGGAGTTTTGGCCCCAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * * *
20613409 TTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCAAAAAAAAATTCAGCCAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
20613474 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20613539 GCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGATTTCTCGAGGTTTGGTGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* **
20613604 GGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCATACACCCCCCGGCCC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** * * *
20613669 CCCCGATCACCGGAACCCCAATGTCGT-CGGTCAGGTTCTTCGGTGAAGGTCTGATGACGGTGCC
390 CCCCGATCGTCGGAACCCCAATG-CCTCCGGTCAGGTTC-TC--CG-CGG-C-GAT---GGTGCC
* * * *
20613733 CCTG-CGAAAAAAAATGCGGCACCAGGACATGCCCAAGCCCAGCATGTGCTGTCGCAA----C--
445 CC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
20613791 -CT--T--GA---T---CT--G-AT---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCC
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
20613835 TAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCG
574 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
20613900 GGGATCGATCGGGTCCCCCTCTGTGTGCTG-TCGATCCTGCTACCACAACCCTCGGTCTGATCTA
639 GGGATCGA-CGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCTG
*
20613964 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
702 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCG
* * *
20614029 GGCACTACGCTGGCCAGAGAGACAGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
767 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
20614094 AGGCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAGTTCATAC
832 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20614152 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
20614217 TTTTGAAAATTTTTACGGTTTGCGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * * * *
20614282 TGGTAGACTTGATTCTTGTATTTTTGCTGGCATGCACAAAAACATTCAACTAAAAACTCAAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
20614347 CACAAGATTTTGTGGCCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
20614412 CAAACCTGTAAAATCTCAAATTC-CTTTTAAGGGGGTGTGAGTTTTCGAGCTTTGATGAGGGATA
261 CAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
20614476 GGGGGCCAACATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * *
20614540 CCCCCGATCGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCC
389 CCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCC-GCG--G------CGATGGTGCC
* * * * ** * *
20614605 TC-AGTGAAGAAAAATGAGGCACTAGCACATGCCCGAGCCCAAAATGTGCTTCCACAA-CC-C--
445 CCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
20614665 TC--G---G-TC-----C---G-AT---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCC
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20614708 TAAGTCAATCCATGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
574 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * ** * *
20614773 AGGATCGGCCGAGTCCCCCTATGCGTGCTACTAATCTTGCTACCATAACCCTCGATCCGGTCTGA
639 GGGATC-GACGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* ** *
20614838 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGCGGGCGGACGGGACG
703 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAA--A-C--G-AGA-GGG-CG
* * * ** * *
20614903 GGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCATAAGCCATGGATCGATAGCGTGGTAG
759 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
20614968 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATA
824 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
20615033 C
889 C
*
20615034 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
20615099 TTTTTAAA------A----T----A-TTTTT--GA--------AAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
*
20615139 TGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
20615204 TATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTATTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
20615269 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20615334 GAGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA----CC-G-CCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* ** * * *
20615393 CCCAATCACCGGAAACCCAAAGCCGT-GGGTCAGGTTCTCTAGCGATGCTCTGGCGATGGTGCCC
391 CCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTC---C---G--C-GGCGATGGTGCCC
** * *
20615457 CGACGAAGAAAAATGCACCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTC
446 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
20615522 TGGTCCGATCTTAGACTGGGAATGAA-TTCTATATGCATAGACTAGGAATGAACTCCATATGCCT
511 TGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * ** * *
20615586 AAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCAAACAGGTGGGATGCACAAGCCGG
575 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * *
20615651 GGATCGATCGGGTCCACCTCTGCATGCTGTTGATCCTACTCCCACAACCCTCGATCTGGTCTGAT
640 GGATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* *
20615716 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA------GCAGGTGGG
704 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGG
* * *
20615773 CACTACGCCGACCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGGTGGTA-GTGGGTTTA
769 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGGTGGTAGGTGGGTTTA
*** **
20615837 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTTCTTGTAAATTCATAC
833 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
20615894 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACAACTCGTGTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
*** * * *
20615959 TTCCAAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGAAAGAATTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
*
20616024 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
** *
20616089 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATGCTTTAATTGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
20616154 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
20616219 GGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCACGTGCGCACACCCCCTGG-CCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * ** *
20616283 CCCTATCGTCAGAACCCCAAAGCCGGCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCC
391 CCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCC------G---CGGCGATGGTGCCCC
* * * * *
20616348 GACGAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGT-T
447 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * ** *
20616412 CGGTCTGATCTTAGACTGGGAATGAACTCCACAGGCTTAGACTGGGAATGAACTCCGTATGCCTA
512 -GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * * * *
20616477 AGTCAACCCACGAAAGGAGCGCGCGGGTGCTTAGCCGGCTAGAAGGGTGGGACGTGCATGCCGGG
576 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * *
20616542 GATCGACTGGGTCCCCTTCTGTC-TGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGAT
641 GATCGAC-GGGTCCCCCTCTG-CGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* * * * *
20616606 CTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGAGCGGGCTGGCGGGTGGG
704 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGG
* * * * *
20616671 CACTACGCCGGCTAGAGAGACTGGATGCGCACGCCGTGGATCGATAGGGTGATAGGTCGGTTTAG
769 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
20616736 GCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTGAATTCATAC
834 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20616792 AATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * *
20616857 TTTTGAAAGTTTTTGCGCTTTGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
20616922 TGGTAGACGTGATCCTTTTATTTTTGTTGCCATGCACAAAAACATTTAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
20616987 TACAACATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
20617052 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20617117 AGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** *
20617182 CCCGATCGTCGGAACCTTAATGCCGT-CGGTCAGGTTCTCCGATGATGCTCCAGTGATGGTGCCC
391 CCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCG-CG--G---C---GATGGTGCCC
* * * * *
20617246 CGACAAAGAAAAAAGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTC
446 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * * * *
20617311 CGATCCAATCATAGACTTGGAATGAACTCCGTATGGTTAGACTGGGAATAAACTCCGTATGCCTA
511 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
20617376 AGTGAACCCACGAAACGAGCGTGAGGGTGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGCCGAG
576 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * ** *
20617441 GATCGACAGGGTCCCTCTCTGTGTGCTACCGATCCTGCTGCCTTAACCCTCGGTCTGGTCTGACC
641 GATCGAC-GGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATC
* * * * *
20617506 TTAGACAGCGAATGAACTTCGTATGCCTAAGCCAACCGATGAAAC--GA--GCGGCCGGGCGGGC
705 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGC
* * *
20617567 ACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGATTAGG
770 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
20617632 CACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTTTAAATTCATAA
835 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
20617687 AATGGTCCCTTAAGACTTCACATCAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * ***
20617752 TTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAATTTTTTTTCCCAAAC
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCCCCAAAC
* * *
20617817 TTGGTAGACGTGATCGTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGT
130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
20617882 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
195 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
20617947 GCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATA
260 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
20618012 GGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCACACCCCCC-G-CC
325 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** * * * * **
20618075 CCCCGATCACCAGAACCCCACTGCCGT-CGGTCAGGTTCT-C-CGACGATGGTGCGCCGGTGAAG
390 CCCCGATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACGAAG
* * * * *
20618137 AAAAATACAGCACCAGCACATGCTCGCGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGA
454 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
* *
20618202 TCTTAGACTGGGAATGAACTCCGTATG-TATAGACTGGGAATGAACTCCGCATGCCTAAGTCAAC
519 TCTTAGACTGGGAATGAACTTCGTATGCT-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
20618266 CCATGAAATGAGCGTGCGGGTGCTTAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
583 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
* * * * * *
20618331 TGGGTCCCCCTCTACATGCTG-TCGATCTTGCTGCCGGAACCCTCGGTCTGGTCTAATCTTAGAC
648 -GGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * *
20618395 TAGGAATGAACTCTGTATGCCTAAGCC-ACCGAATGAAA--TGA--GCGGACGGGCGGGCACTAC
711 TGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGAGGGCGGGCGGGCGGGCACTAC
* *
20618455 GCCGGCCAAAGGAGACGGGACGCAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGAGCA
775 GCCGGCCAGA-GAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCA
* * *
20618520 AATCTTCACATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
837 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20618573 AATGGT-CCTTAAGTTCACGTGAAGTTTCATGGTAAGGACGACTCGTTTTCTAATTTTTTCACGT
1 AATGGTCCCTTAAG--C-C-------TTC---------ACG--T-G-------A-------A-GT
* *
20618637 GAAGTTCATGGCCAAG-CGACTTGTTTACTATTTTTCATGATTTTTTGAAACTTATTTACAGGTT
29 ----TTCATGG-CAAGACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTT-TTTAC-GGTT
* * * * * *
20618701 CGAGATTTTTT-AAACTTTTTCGGAAGGCAGTTTTGGACCCAAACTTGGTAGACG-GGTCCCTGT
86 CGGGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
20618764 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
150 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * *
20618829 TTCAAAAAAATGTCCCCATTCCAAACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAA
215 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
20618894 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
280 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
20618959 AGTACCAGCACCCATCCCACATCATGTGCGCACACCCCCTCAGCCCCCCCGATCGCCAGAACCCC
345 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCC
* * * *
20619024 AATGTCGCCGGTTAGGTTCTCCGGCGATGCTCCTACGATGGTGCCCTGACGAAGAAAAATGCGGC
409 AATGCCTCCGGTCAGGTTCTCC-GCG--G------CGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
20619089 ACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAA-CC-C--AC--G---G-TC-----C---
465 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
*
20619136 G---G---TTCG-A-CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
530 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
20619193 CGTACGGGAGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGACCTGGTCCCCCTC
595 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTC
* * * * * * * * *
20619258 TGCCTGTTGCCGATCTTGTTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTC
659 TGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
20619323 CGTATGCCTAAGCCAACCGATGAAACAGGCAGGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGA
724 CGTATGCCTAAGCCAACCGACGAAAC--G-A-GAGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * * * * *
20619388 GAGATGGGATGCACAAGCCATGGATCGATAGAGTGCTAGGTGGGTTTAGGTACATCTTCATATTT
785 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
20619453 TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
850 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20619493 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCGTTTTCTATTTTTCAAGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * * *
20619558 TTTCGCAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGCAATGAGTTTT-GCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
*
20619622 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
20619687 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
20619752 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTG
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20619817 GGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCCGGCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCC
* * * *
20619882 CCTCTGATCG-CAGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGACGGTGC
389 CCCCCGATCGTC-GGAACCCCAATGCCTCCGGTCAGGTTCTCCG-CG--G---C---GATGGTGC
* * * * * *
20619946 CCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAGCCATCGG
444 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
20620011 TCTAGTCCGATCTTAGACTGGGAATGAAC-TCTGTAAGCTTAGA-TAGAGAATGAACTCCGTATG
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACT-GGGAATGAACTCCGTATG
* * * *
20620074 CCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGC
572 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
20620139 C-GGGATCAGTCGGGTCCCCCTCTGCGTGCTG-TCGATCTTGCTACTGCAACCCTCAGTCCTGTT
637 CGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGT-CTGGT
* * *
20620202 C-GATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-A--GTGGACGG
699 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGG
* ** ** * * * *
20620262 GCGGACACTATACCGGCCAGAGAGATTGGATGCACAAGCCGTGGATCGATAGGGTGGCATGCGGG
764 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *** * *
20620327 TTCT-GCCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAATGATAC
829 TT-TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20620388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * * * * *
20620453 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAACGATTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
20620518 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGACGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
20620583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
20620648 CAAACCTGCAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAA
261 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20620713 GGGGCCAATATGAGGGCCAAGTACCAG-ACCCATCGCACATCATGTGGGCACACCCCCCTAGGCC
326 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGCC
* * * * * *
20620777 CCCCCGATTGCCGGAACCCTAATG-CTGCCGGTTAGGTTCTAAGGCGATGCTCCGACGATGGTGC
389 CCCCCGATCGTCGGAACCCCAATGCCT-CCGGTCAGGTTCT----C----C-GCGGCGATGGTGC
* * * * * *
20620841 CCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAACATGTGCTGCC-AAAACC-C--
444 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
20620902 TC--G---G-TC-----C--GG--T---C--CG-AT-CATAGACTGGGAATGAACTCCGTACGCC
509 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20620945 TAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAGCCGGCCAG-GGGGCGGGATGCGCAAGCTG
574 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
20621009 AGAATCGATCGGGTCCCCCTCTCCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCCT-
639 GGGATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGT-CTG
* * * *
20621073 ATCTTTGATTGGGAATAAACTCCGTATGCCTATGCCAACCGACGAAAC--GA--GCGGGCGGGCG
702 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCG
* * *
20621134 GGCACTACGCCGGCCAGAGAGACGGGATGCGTAACCCGTGGATCGATAGGGTGGTAGGTGCGTTT
767 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
20621199 AGGCACATCTTCATATTTCTTCATGCCAATGCAATTTTTATGGCTTGTAAATTAATAC
832 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
20621257 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGGTTTATATTTTTCACGAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
20621322 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAATGTGTTTTGGCCCCAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
20621387 TGGTCGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCACCTAAAAAC-CGAAAAG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG--AAG
* *
20621451 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGA
194 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
20621516 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGGT
259 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
20621581 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGAG
324 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-G
* ** * * *
20621646 -CCCCCCGATCGTCGGAATCATAATGCCGCCGGTCAGGTTCTTTAGCGATGCTCTGGTGATGGTG
387 CCCCCCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTC--T--C----CGC-GGCGATGGTG
** * * *
20621710 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAAGCCTCG
443 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
20621775 GT-TCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATG
508 GTCT-GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * **
20621839 CCTAATTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCC-GCCAGAGGGGAAGGATGCGCATAT
572 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-A-
* * * * ** * *
20621903 GCCGGGGATCTCGGTCGAGT-CCCCTCCTACGTGCTGC-CATTCCTATTTGCCGTAACCGCTCAA
635 GCCGGGGA--TC-GACGGGTCCCCCT-CTGCGTGCTGCTGA-TCCT-GCTACCGCAACC-CTC--
*
20621966 GGTCCTGGATCTGATCATTAGACTGGGAATGGGACTCCGTATGGCCTAAGCCAACCGACGAAACG
691 GGT-CTGG-TCTGATC-TTAGACTGGGAAT-GAACTCCGTAT-GCCTAAGCCAACCGACGAAACG
* * * *
20622031 AGCTGGGCGGTGC-GGCAGGGCAAGGCCAATTACGCTGGCC-GAAGAGATTGGGATGCGGTAAGC
751 AG-AGGGCGG-GCGGGC-GGGC-A---C---TACGCCGGCCAG-AGAGA-CGGGATGC-GCAAGC
*
20622094 CGTGGGATCGATAGGGTGGTAGGTGGGTTTAGTCCACATCTTCATTATTTCTGCATGCCCAATTT
803 CGT-GGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCA-TATTTCTGCATG-CCAA--T
20622159 G-CATTTTTATGGCTTGTAAATTCATAC
862 GCCATTTTTATGGCTTGTAAATTCATAC
* *
20622186 AATCGG-CCCTTAACCCTTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTAATTTTT-AC
1 AAT-GGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCAT
* * * *
20622248 G-TTTCTCGAAACTTTGTTACGGTTTGGGATTTTTTCAAAATTTTTTTGGAA-GAG-TTTGGCCC
63 GATTT-TTGAAACTTT-TTACGGTTCGGGATTTTTT-AAAATTTTTTCGAAAGGAGTTTTGGCCC
** * * *
20622310 CAAACTTTTTAGATGTTATCCTTGTATTTTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTC
125 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
20622374 GAAGTGTGCAAGATTTTGTGACCATTTCAAAGAAGT-TCCCCATTTCAGACACTTTAATGGCTAC
190 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
20622438 TGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
255 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
20622503 GGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
320 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
20622568 GGCCCCCCCGATCGTCGGAACCCCAACGTCGT-CGGTTAGGTTCTCCGATGATGCTTCGGCGATG
385 GGCCCCCCCGATCGTCGGAACCCCAATG-CCTCCGGTCAGGTTCTCC------G---CGGCGATG
* * * * ** * *
20622632 GTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTTTTGCTGTAA---
440 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
20622694 -C---C--AT-CGATC-----C--GG--T---C--CG-AT-CTTAGAATGGGAATGAACTCCGTA
505 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
20622736 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCTCTCAGCCGGCCAGA-GGGCTGGGATACACA
570 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCA
** *
20622800 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGG
634 AGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGG
* * *
20622865 TCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCG
698 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GAGGGCG
* * * * *
20622930 GGCGGGCGGGCACTACACCGGCCAGAGATAAGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAG
759 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
***
20622995 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
824 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
20623060 C
889 C
* * * **
20623061 AATGGTCCCTTAACCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACAAT
1 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * * * *
20623126 TTTT-AAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGTATTTTTGGCCCAAAACT
66 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
20623190 T
131 T
20623191 TTTTAGATGT
Statistics
Matches: 21535, Mismatches: 2667, Indels: 1621
0.83 0.10 0.06
Matches are distributed among these distances:
851 87 0.00
852 4 0.00
853 3 0.00
854 1 0.00
855 2 0.00
856 1 0.00
857 413 0.02
858 107 0.00
859 84 0.00
860 323 0.01
861 179 0.01
862 2 0.00
863 3 0.00
864 251 0.01
865 110 0.01
866 10 0.00
867 291 0.01
868 314 0.01
869 843 0.04
870 257 0.01
871 447 0.02
872 540 0.03
873 212 0.01
874 69 0.00
875 514 0.02
876 290 0.01
877 473 0.02
878 269 0.01
879 358 0.02
880 327 0.02
881 567 0.03
882 902 0.04
883 338 0.02
884 192 0.01
885 336 0.02
886 187 0.01
887 141 0.01
888 29 0.00
889 100 0.00
890 901 0.04
891 388 0.02
892 514 0.02
893 605 0.03
894 57 0.00
895 712 0.03
896 1372 0.06
897 1090 0.05
898 760 0.04
899 697 0.03
900 450 0.02
901 1163 0.05
902 157 0.01
903 1095 0.05
904 416 0.02
905 14 0.00
906 186 0.01
907 12 0.00
908 11 0.00
909 20 0.00
910 1 0.00
911 4 0.00
914 8 0.00
915 183 0.01
916 10 0.00
917 4 0.00
918 1 0.00
919 2 0.00
920 60 0.00
921 45 0.00
922 26 0.00
923 34 0.00
924 9 0.00
925 125 0.01
926 186 0.01
927 286 0.01
928 79 0.00
929 119 0.01
930 75 0.00
931 18 0.00
932 1 0.00
933 2 0.00
935 1 0.00
937 1 0.00
939 1 0.00
940 2 0.00
941 56 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGGG
TCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
Found at i:20612956 original size:26 final size:26
Alignment explanation
Indices: 20612917--20612969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20612907 TCGATCCGAT
* *
20612917 CTTAGACTAGGAATTAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20612943 CTTAGACT-GCGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
20612969 C
1 C
20612970 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20615569 original size:26 final size:26
Alignment explanation
Indices: 20615533--20615583 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20615523 GGTCCGATCT
* * *
20615533 TAGACTGGGAATGAATTCTATATGCA
1 TAGACTAGGAATGAACTCCATATGCA
20615559 TAGACTAGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
20615584 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCA
Found at i:20617351 original size:26 final size:26
Alignment explanation
Indices: 20617322--20617371 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20617312 GATCCAATCA
* *
20617322 TAGACTTGGAATGAACTCCGTATGGT
1 TAGACTGGGAATAAACTCCGTATGGT
20617348 TAGACTGGGAATAAACTCCGTATG
1 TAGACTGGGAATAAACTCCGTATG
20617372 CCTAAGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGGT
Found at i:20621825 original size:26 final size:26
Alignment explanation
Indices: 20621787--20621839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20621777 TCGATCCAAT
*
20621787 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
*
20621813 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
20621839 C
1 C
20621840 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:20623607 original size:399 final size:400
Alignment explanation
Indices: 20622815--20623608 Score: 1087
Period size: 399 Copynumber: 2.0 Consensus size: 400
20622805 GGGATCGATC
* ** *
20622815 GGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGATTG
1 GGGTCCCCCTCTCCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
20622880 GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTA
66 GGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGA-------GGCGGACGGGCGGGCACTA
* * *
20622945 CACCGGCCAGAGATAAGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACA
124 CACCGGCCAGAGAGAAGGGATGCGCAACCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
20623010 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAC
189 TCTTCATATTTCTATATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAC
* * *
20623075 CCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACAATTTTTAAAATTTTTA
254 CCTTCACGTAAAGTTTCATGGCAAGACGACTCGGTTTATATTTTCCACAATTTTGAAAATTTTTA
* * * ** * **
20623140 CGGTTCAGGATTTTTTAAAATTTTTTTGGAAGTATTTTTGGCCCAAAACTTTTTTAGATGTTATC
319 CGGTTCAAGATTTTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCAAAACTTTGGTAGACGAGATC
20623205 CTTGTGTTTAATCGACT
384 CTTGTGTTTAATCGACT
* *
20623222 GGGTCCCCCTCTCCGTGCTG-TCGATCCTGCTACCGCAACCCTCGGTCTGGTCCT-ATCTTTGAC
1 GGGTCCCCCTCTCCGTGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGT-CTGATCTTAGAC
* * *
20623285 TGGGAATAAACTCCGTATGCCTATGCCAACCGACGAAACGA-GCGGACGGGCGGGCACTACGCCG
64 TGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGACGGGCGGGCACTACACCG
* *
20623349 GCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
129 GCCAGAGAGAAGGGATGCGCAACCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
20623414 ATATTTCT-TCATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTAAGCCTT
194 ATATTTCTAT-ATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAACCCTT
* * ** *
20623478 CACGTGAAGTTTCATGGCAAGACGACTCGGTTTATATTTTTCATGATTTTCGAAACTTTTTACGG
258 CACGTAAAGTTTCATGGCAAGACGACTCGGTTTATATTTTCCACAATTTT-GAAAATTTTTACGG
* *
20623543 TTCAAGATTTTTTAAAATTTTTTCGGAAGGT-GTTTTGGCCCCAAAC-TTGGTCGACGAGATCCT
322 TTCAAGATTTTTTAAAATTTTTTCGGAA-GTAGTTTTGGCCCAAAACTTTGGTAGACGAGATCCT
20623606 TGT
386 TGT
20623609 ATTTTTGTTG
Statistics
Matches: 343, Mismatches: 39, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
398 1 0.00
399 196 0.57
400 51 0.15
401 2 0.01
406 1 0.00
407 90 0.26
408 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (400 bp):
GGGTCCCCCTCTCCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGACGGGCGGGCACTACACCGGC
CAGAGAGAAGGGATGCGCAACCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTATATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAACCCTTCAC
GTAAAGTTTCATGGCAAGACGACTCGGTTTATATTTTCCACAATTTTGAAAATTTTTACGGTTCA
AGATTTTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCAAAACTTTGGTAGACGAGATCCTTGTGT
TTAATCGACT
Found at i:20624027 original size:26 final size:26
Alignment explanation
Indices: 20623989--20624041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20623979 TCGATCCAAT
*
20623989 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
*
20624015 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
20624041 C
1 C
20624042 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:20625781 original size:26 final size:26
Alignment explanation
Indices: 20625752--20625802 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20625742 CCAGTCCGAT
*
20625752 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGCAATGAACACCGTATG
20625778 CTTAGACTGGCAATGAACACCGTAT
1 CTTAGACTGGCAATGAACACCGTAT
20625803 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACACCGTATG
Found at i:20626684 original size:26 final size:26
Alignment explanation
Indices: 20626655--20626733 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20626645 CCGGTTCGAT
20626655 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20626681 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20626707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20626733 C
1 C
20626734 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20628447 original size:899 final size:900
Alignment explanation
Indices: 20623222--20630302 Score: 8324
Period size: 899 Copynumber: 7.9 Consensus size: 900
20623212 TTAATCGACT
* * * * * *
20623222 GGGTCCCCCTCTCCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCTATCTTTGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
20623287 GGAATAAACTCCGTATGCCTATGCCAACCGACGAAAC--G-A-GCGGACGGGCGGGCACTACGCC
66 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCC
*
20623348 GGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
131 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
20623413 CATATTTCTTCATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTAAGCCTT
196 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
20623478 CACGTGAAGTTTCATGGCAAGACGACTCGGTTTATATTTTTCATGATTTTCGAAACTTTTTACGG
261 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
* * * * *
20623543 TTCAAGA-TTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTCGACGAGATCCTT
326 TTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTT
* *
20623607 GTATTTTTGTTGGCATGCACAAAATAATTCACCTAAAAAC-CGAAAAGTGTACAAGATTTTGTGA
391 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG--AAGTGTACAAGATTTTGTGA
* *
20623671 CCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTATTGGCTACTGGAAGCAAACCTGTAAAATC
454 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
20623735 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGGTAGGGGGCCAATATAAGG
519 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
20623800 GCCAAGTACCAGCACCCATTGCACATCATGTTCGCACACCCCCCCGAGCCCCCCGATCGTCGGAA
584 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAA
**** * ** * * * *
20623865 TTGTAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATG
648 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG
* * * * *
20623930 CGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAAGCC-TCGGT-TCGATCCAATCTTA
713 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTTCGGTCT-GGTCCGATCTTA
* *
20623993 GACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGA
776 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * *
20624058 AACGAGCGTGCGGG-GCTCAGCCGACCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGTC
841 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATC
* * * * * *
20624117 GAGTCCCCCTCTACGTGCTGCCAATCCTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
20624182 GGAATGGACTCCGTAGGCCTAAGCCAACCGACGAAACGAGC-GGCTGGGCGGGCAGGCAGGCATT
66 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC-GGGCGGGC--G--GGCACT
* * *
20624246 ACGCCAGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCAC
126 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20624311 ATCTTCATATTTCTGCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
191 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
20624376 CCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAC-ATTTCTCGAAACTTT
256 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TCGAAACTTT
* * * ** *
20624440 TTACGGTTTGGGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTTTTTAGATGT
320 TTACGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGAAGT
* * * * *
20624504 TATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTGCAAGATTA
384 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
20624569 TGTGACCATTTCAAAGAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAGACCTGTA
449 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
20624633 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATA
514 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
*
20624698 TAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
579 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * * * * *
20624763 GGAACCCCAACT-TCGTCGGTTAGGTTCTCCGATGATGCTTCGGCGATGGTGCCCTGACGAAGAT
644 GGAACCCCAA-TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
* ** * * *
20624827 AAATGTGACACCAGCACATGCCCGAGCCCAGCATGTTTTGCTGTAA-C--C-ATC--G---G-TC
708 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATC
20624882 -----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
773 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * **
20624931 CGAAACGAGCGTGCGGCCTCTCAGCCGGCCAGAGGGTTGGGATGCA-CAAGCCGGGGATCGATC
838 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-AGCAAGCCGGGGATCGATC
** * * * * **
20624994 GGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACCATCCTCGATCCGGTATGATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
20625059 GGAATGAACTCCGTATGCCT-A-CCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCGGCATTA-
66 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC--G-GGCACTAC
* * * * *
20625121 -ACGGCCAGAGATAAGGGATGCGCAAGGCGTGGATCAATAGGGT-GT-GGTGGGTTTAGGCACAT
128 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20625183 CTTCGATTTTTATG--TGCC-ATGCCATTTTTCATGGC--GTAAATTCATACAGATGGT-CCTT-
193 CTTC-ATATTTCTGCATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACA-ATGGTCCCTTA
* * ** *
20625241 ACCCTT-ACTTG-AGTTATCATGGCAAGACGAC-C---TTC-A-TTTTC-C-ATTTTTTAAA-AT
255 AGCCTTCACGTGAAGTT-TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
*** * * **
20625295 TTTACGAGTTC-AGATTTCTTCTTAAAGA-TCAAT--GAAGTA-TTTATGG--CAAAACTTTTTA
319 TTTACG-GTTCGAGATTT-TT-TTAAA-ATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTA
* *
20625353 GATAGTTA-CCTTGTGTTTTTGTTGGGCAATGCACAAAAAAATTCAGCTAAAAAACTCGAAGTGT
379 GA-AGTGATCCTTGTATTTTTGTT-GGC-ATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGT
* *
20625417 ACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
440 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20625482 AAACCTGTAAAAT-TCAAATACTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGG
505 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
20625546 GGGCCAATATAAGGGCCAAGTACGAGCACCCACCGCACATCATGTGCGCACA-CCCCCCGGCCCC
570 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
20625610 CCTATCGTCGGAACCCCAATGTCGCCGGTCAGGTTTTTCGACGATGCTTCGGCGATGGTGCCCCG
635 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * *
20625675 GTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCCGCAACCCTCAGTCCA
700 GCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCT---T-CG
** * * * *
20625740 GTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATCC
760 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
20625805 CTAAGTCAACCCATGAAACGAGCGTACGGGAC-CTTAGTCGGCCAGAGGGGCAGGATGTGTAAGC
825 CTAAGTCAACCCACGAAACGAGCGTGCGGG-CGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGC
* **
20625869 CTGGGATCGGCC
889 CGGGGATCGATC
* * ** * *
20625881 GGGTCCCCCTCTACGTGCTGCCAATCCTG-TGGCTGCAACGATAGGTCTGGTCCGATCTTAGACT
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
20625945 GGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGGGGCATTA
65 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC---GGGCACTA
* * *
20626010 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGAGTTTAGGCACA
127 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
**
20626075 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
192 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
20626140 CTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCGCAACTTTTT
257 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * *
20626205 ACGGTTTGAGATTTTTTT--AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
322 ACGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGAT
* *
20626268 CCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAAGTCGAAGTGTACAAGATTTTGT
387 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
20626333 AACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTACTGGCAGCAAACTTGTA
452 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG---CTACTGGCAGCAAACCTGTA
*
20626398 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
514 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* *
20626463 TAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCAATCGTC
579 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * * * *
20626527 GGAACCCCAAAGCCGCCGCTCAGATTTTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
644 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
* * * *
20626592 AATGTGACACCAGCACATGCCCGAGCCCAGCATGTCCAGCCGTAACCCTCGGTCCGGTTCGATCT
709 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCT---T-C-G---G----
**
20626657 TAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATG
761 T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
20626722 AACTCCGTATGCCTAAGTCAACCCAGGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
813 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
20626787 GATGCGCAAGTCGAGGATC-AGC
878 GATGAGCAAGCCGGGGATCGATC
* * * * *
20626809 TGGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTTGACT
1 -GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* ** * * * *
20626874 AGGAATGAACTTTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCATTACGC
65 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGC
* * * * * *
20626939 TGGCCAGAGGGGCGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGTACATCT
130 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
20627004 TTATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACATTGGTCCCTTAAGCCT
195 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
20627069 TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTACTTTTCACCATTTTCAAAACTTTTTACG
260 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACG
** * * *
20627134 GTTCGAGA-TTTTTTAAAACTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTTTTTTGATGTTATC
325 GTTCGAGATTTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGAAGTGATC
*
20627197 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
388 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
20627262 ACCATTTGAAAAAA-TTTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
453 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
20627326 CTCAAATGCTCTTTAAGGTGGTGTGACTTCTCAAGGTTTGAT-AGGGATAGGGGGCCAATATAAG
518 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
20627390 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGTAGGA
583 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGA
** * * * ** **
20627455 ACCCCAATGCCGTTGGCCAGGTTCTTCGGCGATGCTCCGATGATGGCACCCCGGCGAAGAAAAAT
647 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAAT
* * * ** *
20627520 ATGGCACAAGTACATTACCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCAGATCTTAG
712 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAG
* * * * * * *
20627585 ACTGGGTATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTTTGCCCAAGTCAACCAACAAA
777 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * **
20627650 ATGAGCGTGCGGGCGCACAGCCGGCTAGAGGGGCGGGATGAGCAAGTTGGGGATCGATC
842 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATC
* * * ** ** **
20627709 GGGTCCCCCTCTATGTGCTGTCGATCTTGCTATCGCAACCCTCAATCCAATCCGATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
20627774 GGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACAAGCAGGCGGGCGGGCGGGCACTACGTC
66 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCC
* * * *
20627839 GGCTAGAGAGATGGGATGCACAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTT
131 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * ** *
20627904 CATATTTCTACGTGCCAATGCCATTTCAATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTT
196 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
20627969 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
261 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
* * * *
20628034 TTCGAGATTTTTTTAAAATTTTTTCGGAAGGTGATTTGTCCCTAAACTTGGTAGAAGTGATCCTT
326 TTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTT
* * *
20628099 TTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGTGTC
391 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GTGAC
* * * *
20628164 CATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCT
455 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
20628229 CAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
520 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
20628294 CCAAGTACCAGCA-CCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCCGAT-G-CTGGAA
585 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAA
* * *
20628355 CCCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
648 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG
* * * * *
20628420 TGGCACCAGCACATGCCCCAACCCAGCAAGTGCTACCGTAACC--C--T-T-G---G---TT---
713 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAGA
*
20628470 C--GG--T---CT--G-AT-CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
778 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
20628524 CGAGCGTACGGGCGCTTAGCCGACCAGATGGGCGGG-TTACGGAAGCCGGGGATCGATT
843 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGA-GCAAGCCGGGGATCGATC
* * * * * *
20628582 GGGTCCTCCTCTACGTGCTGCCGATCCTGCTGTCAG-AACCCTTGGTCTGGTTCGATCTTAGATT
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * ** * * *
20628646 GAGAATGAACTCTGTATGCCTAAGCCAATTGATGAAACAAGCAGGCGGCGGGCGGGCAGGCACTA
65 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA---GGCGGGCGGGCGGGCACTA
* * ** * *
20628711 TGCCGGCTAGAGAGATTGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACA
127 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
** * *
20628776 TCTTCATATTTCTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAG
192 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
20628841 CCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
257 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * * * *
20628906 GCAGTTCGAGATTTTTTT-TAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGAATACA-TGA
322 ACGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGA
* * *
20628969 TCCTTGTATTATTGTTGGCATGCACAAAAGAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTG
386 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
20629034 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACTTGTAAA
451 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20629099 ATCTCAACTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
516 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
*
20629164 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACGCCCCCCGGCCCCCCCGATCGT
581 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-AC-CCCCCCGG-CCCCCCGATCGT
* * * ** *
20629229 CGGAACCCCAATGCCACCGATCAGGTTCTCCGATGATGCTCCAACGATGGTGCCCCGTCGAAGAA
643 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
* * * * * **
20629294 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGAT-TCAATCCGAT
708 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCT-GGTCCGAT
* * *
20629358 CTTAGACTGGGAAAGAATTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
772 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
20629423 ATGAAATGAGCGTGCGAGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACC
837 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATC
** * * * ** * ** ** * * **
20629487 AAGTCCACTTCTGCACGCCGTTGATCCTGCTGCCAAAACCCTCAGTTCGGTCTAATCTTAGACTG
1 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
20629552 GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC--G-A-----GCGGGCGGGCACTACGCC
66 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCC
* * * * * *
20629609 GTCTAGAGATACGGGATGTGCAAGCCGTGCATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTT
131 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
20629674 CATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCCT
196 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
20629739 CACGAGAAGTTGCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
261 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
* * * *
20629804 TTCTG-GATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAGCTTGGCAGACGTGATCGC
326 TTC-GAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATC-C
*
20629867 TT-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGA
389 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
20629931 CCATTCGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
454 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* ** *
20629996 TCAAATTCTCTTTAAGCAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
519 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
20630061 TCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGGCCCCCCGGTCGTCGGAA
584 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAA
* * * * * * *
20630126 CCCCAATGTCGCCGGTCAAGTTCTCCGGCGATGCTCCGGCGATGTTGCCCTGGCGAAGAAAACTA
648 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG
* * * *
20630191 TGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGA
713 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAGA
* * *
20630256 CTGGGAATCAACTTCGTATGCTTAGACTGGGAATGAAGTCCGTATGC
778 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
20630303 TTAGACTAGG
Statistics
Matches: 5321, Mismatches: 678, Indels: 377
0.83 0.11 0.06
Matches are distributed among these distances:
854 21 0.00
855 13 0.00
856 144 0.03
857 152 0.03
858 54 0.01
859 12 0.00
860 2 0.00
861 2 0.00
864 6 0.00
865 21 0.00
866 6 0.00
867 18 0.00
868 15 0.00
869 9 0.00
870 21 0.00
871 11 0.00
872 38 0.01
873 169 0.03
874 148 0.03
875 144 0.03
876 274 0.05
877 111 0.02
878 21 0.00
879 104 0.02
880 2 0.00
881 2 0.00
882 3 0.00
883 2 0.00
884 2 0.00
885 4 0.00
886 3 0.00
887 155 0.03
888 3 0.00
889 36 0.01
890 3 0.00
891 40 0.01
892 182 0.03
893 25 0.00
894 462 0.09
895 109 0.02
896 19 0.00
897 6 0.00
898 22 0.00
899 576 0.11
900 65 0.01
901 109 0.02
902 151 0.03
903 410 0.08
904 123 0.02
905 192 0.04
906 22 0.00
907 62 0.01
908 221 0.04
909 2 0.00
912 2 0.00
916 2 0.00
919 2 0.00
920 1 0.00
921 1 0.00
923 59 0.01
924 74 0.01
925 106 0.02
926 192 0.04
927 51 0.01
928 95 0.02
929 206 0.04
930 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
TTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCC
CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATC
Found at i:20629387 original size:26 final size:26
Alignment explanation
Indices: 20629358--20629410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20629348 TCAATCCGAT
*
20629358 CTTAGACTGGGAAAGAATTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
20629384 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20629410 C
1 C
20629411 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:20629789 original size:894 final size:892
Alignment explanation
Indices: 20628479--20630302 Score: 2361
Period size: 894 Copynumber: 2.0 Consensus size: 892
20628469 TCGGTCTGAT
* * *
20628479 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
20628544 CGACCAGATGGGCGGGTTACGGAAGCCGGGGATCGATTGGGTCCTCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * * *
20628609 TGCTGTCAG-AACCCT-TGGTCTGGT-TCGATCTTAGATTGAGAATGAACTCTGTATGCCTAAGC
131 TGCTG-CCGCAACCCTCAGTTC-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * **
20628671 CAATTGATGAAACAAGCAGGCGGCGGGCGGGCAGGCACTATGCCGGCTAGAGAGATTGGATGCGC
193 CAACTGACGAAAC--G-A---GGCGGGC--G--GGCACTACGCCGGCTAGAGAGACGGGATGCGC
* * *
20628736 AAGCTGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGTGTGGCAATGC
248 AAGCCGTGGATCGATAGGGTGGTAGGTGG-TTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
20628801 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
20628866 ACAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTTTAATTTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTT
* * *
20628931 TTCGGAAGGAGTTTTGGCCCCAAACTTGGAATACATGATCCTTGTATTATTGTTGGCATGCACAA
442 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20628996 AAGAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
507 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
20629061 TCAAACACTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAACTGCTCTTTAAGGGGGTGTG
572 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20629126 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
637 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
20629191 ATCATGTGCGCACAACGCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTT
702 ATCATGTGCGCAC-A--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
20629256 CTCCGATGATGCTCCAACGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
764 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * *
20629321 CCAGCATGTGCTACCGTAACCCTCGATTC-AATCCGATCTTAGACTGGGAAAGAATTCCGTATG
829 CCAGCATGTGCTACCGCAACCCTCGATTCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20629384 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * ** * *
20629449 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCAAGTCCACTTCTGCACGCCGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
** *
20629514 TGCTGCCAAAACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20629579 CTGACGAAACGA-GCGGGCGGGCACTACGCCGTCTAGAGATACGGGATGTGCAAGCCGTGCATCG
196 CTGACGAAACGAGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
20629643 ATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCT
261 ATAGGGTGGTAGGTGG-TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * * *
20629708 TGTAAGTTCATACAATGGTCCCTTAAGCCCTCACGAGAAGTTGCATGGCAAGATGACTCGTTTTC
325 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
20629773 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCTG-GATTTTTTTAAATTTTTTCAGAAGGAGT
390 TATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTTAAATTTTTTCGGAAGGAGT
* * *
20629837 TTTGGCCCCAAGCTTGGCAGACGTGATCGCTT-TATTTTTGTTGGCATGCACAAAAAAATTCAGC
454 TTTGGCCCCAAACTTGGTAGACATGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
20629901 TAAAAACTCCAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTAAGACACTTT
518 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * ** *
20629966 AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGCAGGTGTGAGTTCTCGAGG
583 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
20630031 TTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGT
648 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
20630096 ACACCCCCCCGGGCCCCCCGGTCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGCGATGCT
713 ACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * * * * *
20630161 CCGGCGATGTTGCCCTGGCGAAGAAAACTATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
777 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * *
20630226 CCGCAACCCTCGA-TCTG-GTCTGATCTTAGACTGGGAATCAACTTCGTATG
842 CCGCAACCCTCGATTC-GAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20630276 CTTAGACTGGGAATGAAGTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20630303 TTAGACTAGG
Statistics
Matches: 799, Mismatches: 113, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
891 2 0.00
892 172 0.22
893 1 0.00
894 446 0.56
895 4 0.01
896 1 0.00
898 6 0.01
902 1 0.00
903 1 0.00
904 1 0.00
905 160 0.20
906 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACGAAACGAGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCGATTCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20630286 original size:26 final size:26
Alignment explanation
Indices: 20630250--20630328 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20630240 CTGGTCTGAT
* *
20630250 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20630276 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20630302 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20630328 C
1 C
20630329 CTCAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20631905 original size:26 final size:26
Alignment explanation
Indices: 20631876--20631928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20631866 CCGGTCTGAT
*
20631876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20631902 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20631928 C
1 C
20631929 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20633496 original size:26 final size:26
Alignment explanation
Indices: 20633467--20633571 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
20633457 CCGGTCTGAT
20633467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20633493 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20633519 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20633545 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20633571 C
1 C
20633572 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20634382 original size:26 final size:25
Alignment explanation
Indices: 20634349--20634400 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20634339 CCAGTTCGAT
20634349 CTTAACTGGGAATGAACTCCATATG
1 CTTAACTGGGAATGAACTCCATATG
*
20634374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTA-ACTGGGAATGAACTCCATATG
20634400 C
1 C
20634401 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCCATATG
Found at i:20634905 original size:901 final size:902
Alignment explanation
Indices: 20632719--20639720 Score: 8361
Period size: 901 Copynumber: 7.8 Consensus size: 902
20632709 GCCCAGCATG
* * * *
20632719 TGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAGGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20632784 CCGACAAAACGAGCGGGCGAGCGGGCGGGTGGGCACTACGCCGGCTAGAGAGACGAGATGCGCAA
66 CCGACAAAACCAGCAGG-G-GCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
20632849 GCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20632914 TTTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGA
194 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
20632979 CGACTCGTTTTCTATTTTTTACGGTTTTTGAAACATTTTAG-AGTTCAGGATTTTTTAAAATTTT
258 CGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
20633043 TTCGGATGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
322 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20633108 AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20633173 TCAGACACTTTAATGGCTATTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20633238 AGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
20633303 ATCATGTACGTACACACCCCTC-A-GCCCCCGGTCGTCTGAACCCCAATGCCGCCGGTTC-GGTT
582 ATCATGTGCGCACAC-CCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGG-TCAGGTT
* * ** **
20633365 CTCCGGCGATGCTCCGACGATGGTTCCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGC
645 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
20633430 CTAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
710 CCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * ** * * *** *
20633495 TAGACTGGGAATGAACTCTGTATG-CTTAG---A--CTGGAAATGAAC-TTCGTATGCTTAGACT
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG-C-
* * *** * * **** ** * * *** *
20633553 AGG-AATGA-ACTCCGTATGC-CTAAGTCAACCCA-CGAAACAAGCGTGCAGGTGCT-CA-GCCA
838 CGGCCA-GAGGGGCGGGATGCGC-AAGTC-GGGGATCG-GTC--GGGTCCCCCT-CTGCATGCTA
***
20633612 GCCAGAGGGG
896 -CC-GA-TCC
* * * ** * *** ** *
20633622 TGGGATG-TGCAAGCCAAGGATC-GG-CCGGGTC--CCCCTATGCATG--CTACCG-AT--C---
1 T--GCTGCCGCAACCCTCGG-TCTGGTCC-GATCTTAGACTGGGAATGAACT-CCGTATGCCTAA
* * ** ** ** ** * * * * *
20633674 -CC-ACTGCCGTAACCCTCAGTTTG-GTTCGA-T---C-TTA-GACTGG-GA-ATGA-ACTTTGT
61 GCCAACCGACAAAACCAGCAG-GGGCGGGCGAGTGGGCACTACG-CCGGCCAGA-GAGAC--GGG
* * ** *
20633727 ATGC-CTAAGCCAATAGAT-GA-A---ACG-AGGTGGGTTTAGGCACATCTTCTTATTTCTGCAT
121 ATGCGC-AAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
20633785 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAATTTC
184 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * **
20633850 ATGGCAAGAGGACTCGTTTTCTATTTTTTATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
249 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* * *
20633915 AAAATTTTTT-GGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCCTGTATTTTTGTTGGC
314 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
20633979 ATGCAAAAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
379 ATGCACAAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
20634044 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
443 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
20634109 GGGTGTGTGAGTTCTCGAGGTTTGACGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGTAC
508 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* **
20634174 CCATCGCACATCATGTGCGCACACCCCCCTCGACCCCCCCGATCGTCGGAACC-CAAATGTCATC
573 CCATCGCACATCATGTGCGCACACCCCCC-CGACCCCCCCGATCGTCGGAACCTC-AATGCCGCC
* * * * * * * *
20634238 GGTTAGGTTCTCCGACGATGCTCCGATGATGCTGCCTCGGCAAAGAAAAATGCAGCACCAGCACC
636 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
*
20634303 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTTCGATCTTA-ACTGGGAATGAACT
701 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
* * *
20634367 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGT
766 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * *
20634432 GCTCAACCGGCCAGAGGGGCTGGATGCGCAAGCCAGGGATCGG-CTGGGTCCCCCTCTGCATGCT
831 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGCATGCT
*
20634496 ACCGATCT
895 ACCGATCC
* * * * * * *
20634504 TGTTGCTGCAACGCTTGGT-TCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20634568 ATCGACAAAACCAG-AGGGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGAGATGTGCAAG
65 ACCGACAAAACCAGCAGGGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *** **
20634632 CCATGGATCGATTGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATTTGCCAATGAAAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20634697 TTTTATGGCTTGCAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** *
20634762 ACTCGCTTTT-TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAACTTTTTT
260 ACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
20634826 CGAAAGGAGTTTTAGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
20634891 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20634956 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20635021 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTTCCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
20635086 CATATGCACATAACGCCCCCCGACCCCCCCGATCGCCGGAACCCCAATCCCGCCGGTCAAGTTCT
584 CATGTGCGCA-CAC-CCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCT
* * * * *
20635151 CCGATGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCTGCACCAGCACATGCCTGAGCCC
647 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * *
20635216 AGCATGTGTTGCCATAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCTGTATGCTTA
712 AGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * ** *
20635281 GACTGGGAATGACCTTCGTATG-CTAAAGTCAACCCACGAAACGAGCGTGCGGGTACTCAACCGG
777 GACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* ** * * * *
20635345 CCAAAGGGGCAAGATGCACAAGTTGGGGATCGGTCGGGTCCCCCTCTGCATGTTACTGATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * * *
20635407 TGCTGCCGTAACCCTCGGTC-GGATCTGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * **
20635471 ACCGACGAAATGAGCGGCCGGGCGGGCGAGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCA
65 ACCGACAAAACCAGCAG--GGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *** *
20635536 AGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAATTACATCTTCATATTTCT-AAGTGCCAATGC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGC
* * *
20635600 CATTTTTATGGCTTGTAAATTCATGCAATGGTCTCTTAAGCCATCACGTGAAGTTTCATGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
20635665 ACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAGTTTTTAAAATTTT
257 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* ** * * * *
20635730 TTTGGTAGGATTTTTGGCCCCAAACGTGGCAGACGTGACCCTTGTATTTTTGTTGGCATGCACAA
322 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20635795 AAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20635860 TTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20635925 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * * * ** *
20635990 ATGATGTGCGCACAGCTTCCCCGGCGCCCCCGATCGTAGGAACCCCAACGCTACCGATCAGGTTC
582 ATCATGTGCGCACA-CCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTC
* * * ** * *
20636055 TTCGACGACGCTCCGACGATGGTTCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCC
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
20636120 CAGTATGCGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
711 CAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * *
20636185 AGACTTGGAATAAACTCCATATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGACGCTCAGTCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* * ** * * *
20636250 CTAGAGGGGCGGGATGCGCATGTCAAGGATCGATCGGGTCCCCCTCTGCATGTTGCCGATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * * * **
20636312 TGCTACCGTAACCCTCGATTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
20636377 CCGATGAAACGAGC--GGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGC
66 CCGACAAAACCAGCAGGGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
20636440 CGTGGATTGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
20636505 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
20636570 CTCGGTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCA
261 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* ** ** * * * *
20636635 AAAGGCGTTTTTTCTGCAAACTTGGTAGACATGATCCTTTTATTTTTTTTTGCATGCACAAAAAA
326 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
20636700 ATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20636765 ACACTTTAATGGCTACTAGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGACTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
20636829 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
521 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * * *
20636894 AGTGCGCGCACCCCCCCGGCCCCCTCGATCGCCGGAACCTCAATGTCGCCGATCAGGTTCTCTGG
586 TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGA
* *
20636959 CGATGCTCTGACGATGGTGCCCCGACGAAGAATAATGCGGCACCAGCACATGCCCGAGCCCAGCA
651 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * *
20637024 TGTGCTACCGTAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
716 TGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
20637089 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGCGCGGGCGCTCAGCTGACCAGA
781 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
20637154 GGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCAATCC
846 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * * * * *
20637211 TACTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCG-ATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20637275 CC-AAAGAAACAAGCAGGTGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
66 CCGACA-AAACCAGCA-G-GGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20637339 TGCCGTGGATCGATAGGTTGGTAGGTGGGCTTAGCCACAT-TTCATATTTCTGCATGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20637403 ATTTTTATGGCTTGTAAATTCATACAATGGACCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20637468 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTTGAG-TTTTTTAAAATTTTT
258 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
20637532 TCAAAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCC-TGTATTTTTTTTTGGTATGCACAA
323 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC-A
* *
20637596 AAAAAATTCAGCT-AAAACTCGAATTGTACACGATTTTGTGACCATTTG-AAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
20637659 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * ** *
20637723 GATTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCAATCGCA
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
20637788 CATCATGAGCGCACACCCCCCC-A--------ATCGTCGGAACCTCAATGCCGTCGGTCAGGTTC
581 CATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTC
*
20637844 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** ** * * * * *
20637909 AAACATGTGCTACCATAAACCTCTGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
711 CAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
20637974 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
** * ** * * * *
20638039 CCAGAGGGGCGGGATGCATAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTACTATCAATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* *
20638101 TGCTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ***
20638166 CCGACGAAACAAGCAGGGG-GGTGGGCAG-GCGAGCACTACGTTAGCCAGAGAGACGGGATGCGC
66 CCGACAAAACCAGCAGGGGCGG-GCG-AGTG-G-GCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
20638229 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCGATGC
127 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
20638294 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCCTGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
20638359 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGCTCGGGATTTTTTAAAATTTT
257 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * *
20638424 TTCGAAAATAGTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
322 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20638489 AAAAAGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * *
20638553 TAAGATACTTTAATGGCGACTGGCAACAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGATG-G
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
20638617 AGTTCTTGAGGTTTGACGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20638682 TTCATGAGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCTCAAT-CCGCCGATCAGGTTCT
582 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCT
* * * *
20638746 CTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCC
647 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
20638811 AGCATGTGCTATTGTAAACCTTC-GTTCAGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCTT
712 AGCATGTGCTGTCG-CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
20638875 AGACTGGGAATGAA-TCCCATATGCCTAAGTCAACCCACGAAATGATCGTGCGGGCGCTCAGCCA
776 AGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
** * * * **
20638939 GAAAGAGGGGCGGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTACTACTAATCC
840 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * * * * * *
20639002 TACTGCCACAACCCTTGATCTGGTCCAATCTTAGACTGGGACTGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
20639067 CCGACGAAACGAGCGGGCGGACGGGC-AGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCA
66 CCGACAAAACCAGCAGG-GG-CGGGCGA-GTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
20639131 AGCCGTGAAGCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
20639196 ATTTTTATGGCTTGTAAATTCATGCAATGGTCTCTTAAGCCATCACGTAAAGTTTCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
20639261 CGACTAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCAGGATTTTTTAAAATTTTT
258 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
20639326 TCGAAAGGAGTTCTGGTCCCAAACCTGGTAGACGTGATCCTTCTAATTTTGTTGTCATGCACAAA
323 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20639391 AAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
20639455 AAAATACTTTAATGACGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-GA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20639519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
20639584 TCATGAGTGCACACCCCCCCG-GCCCCCCGATCATCGGAACCTCAATGCCGTCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTC
* *
20639648 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
648 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
20639713 GCATGTGC
713 GCATGTGC
20639721 CACCGTAAAT
Statistics
Matches: 5276, Mismatches: 702, Indels: 244
0.85 0.11 0.04
Matches are distributed among these distances:
879 66 0.01
880 314 0.06
881 101 0.02
882 125 0.02
883 10 0.00
884 14 0.00
885 14 0.00
886 22 0.00
887 29 0.01
888 11 0.00
889 6 0.00
890 305 0.06
891 98 0.02
892 149 0.03
893 255 0.05
894 7 0.00
895 6 0.00
896 15 0.00
897 6 0.00
898 25 0.00
899 451 0.09
900 211 0.04
901 1736 0.33
902 296 0.06
903 201 0.04
904 15 0.00
905 324 0.06
906 464 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACCAGCAGGGGCGGGCGAGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
Found at i:20636185 original size:26 final size:26
Alignment explanation
Indices: 20636156--20636208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20636146 CCGGTCCGAT
* *
20636156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
20636182 CTTAGACTTGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
20636208 C
1 C
20636209 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:20637091 original size:26 final size:26
Alignment explanation
Indices: 20637055--20637107 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637045 CTAGTCCGAT
20637055 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20637081 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20637107 C
1 C
20637108 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20637974 original size:26 final size:26
Alignment explanation
Indices: 20637945--20637997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637935 TCGGTCCGAT
*
20637945 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20637971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20637997 C
1 C
20637998 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20638897 original size:26 final size:26
Alignment explanation
Indices: 20638846--20638898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20638836 TCAGTCCAAT
*
20638846 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
20638872 CTTAGACTGGGAATGAA-TCCCATATG
1 CTTAGACTGGGAAAGAACT-CCATATG
20638898 C
1 C
20638899 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:20639805 original size:11 final size:11
Alignment explanation
Indices: 20639789--20639813 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
20639779 TTCTACGGTA
20639789 ATGCTCCGACG
1 ATGCTCCGACG
20639800 ATGCTCCGACG
1 ATGCTCCGACG
20639811 ATG
1 ATG
20639814 GTGCCCCGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (11 bp):
ATGCTCCGACG
Found at i:20640834 original size:26 final size:26
Alignment explanation
Indices: 20640796--20640848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20640786 CCGGTTTGAT
* *
20640796 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
*
20640822 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCATATG
20640848 C
1 C
20640849 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:20642085 original size:876 final size:875
Alignment explanation
Indices: 20639920--20646688 Score: 7735
Period size: 887 Copynumber: 7.6 Consensus size: 875
20639910 ATTCCATATG
* * *
20639920 CTTAGA-TCGGGAATGAACTCCGTATGCCGAAGTCAACCAATGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** ** * * * *
20639984 CCGGCCAGAAGGGCGAGATGCACCTGCCAAGGATCGGTTGGGTCTCCCTCTGCGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
20640049 CTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAAC-TCTGTACGCCTAAGCC
130 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCC
* * * **
20640113 AACCGATGAAACGAGTGGGCGGGCGGGCCGGCGGGCACTACGCTAGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** * *
20640178 AAGTCGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCTACGTGCCAATTC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
20640243 CTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * * *
20640308 ACGACTCGTTTTCTATTTTTCATGATTTTT-AAAAGTTTTGCGATTCGGGATTTTTTTAAATTTT
389 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** *
20640372 TTCGAAAGGATTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
454 TTCGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** *
20640437 AAAAATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
20640502 TCAGACACTTTAATTGCTACTGGGAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20640567 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * **
20640632 ATCATGTGCGCACACCCCCCCGGCCCCCAGATCGCCGGAACCCCAACGCTACCGGTCAGGTTCTC
713 ATCATGTGCGCACA-CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
20640697 CGACGATGCTCCGGTGATGGTGCCCCGATGAAGAGAAATGCGGTACTAGCACATGCCCGAGCCCA
777 CGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
20640762 GCATGTGCTGCCGCAACCCTCGGTCCGGTTTGAT
842 GCATGTGCTGCTGCAACCCTCAGTCTGGTTCGAT
20640796 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAAAGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACT--G---G----------G---A-A-T------GAACTCCGTATGCCTAAGTCAACCC
* * * * *
20640861 ATGAAAAGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGATCG
40 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* ** * *
20640926 GGTCCCCCTCTGTGTGCTGTTGATTCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACT-G
105 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * *
20640990 GAATGAACTCCGTATGCCAAAGCCAACCGAGGAAATGAGCGGGCGGGTGGGCGGGCGGGCACTAC
170 GAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC
* * * * * *
20641055 GTCAGCCAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACCT
235 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
20641120 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
300 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * *
20641185 CTTCACGTGAAGTGTCATGGCAAGATGACTCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTA
365 CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
** *
20641250 CGGTTCAAGATTTTTTAAAATTTTTTCAGAACA-AGTTTTAGCCCCAAACTTGGTAGACGTGATC
430 CGGTTCGGGATTTTTTAAAATTTTTTC-GAA-AGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
20641314 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
493 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
20641379 ACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
558 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
20641444 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAG
623 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
20641509 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATTGTCGGAAC
688 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAAC
* * * * *
20641574 CCCAACGCTGCTGGTCAAGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAGAAATGC
753 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGC
20641639 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTTCGAT
818 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTTCGAT
* ** *
20641697 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGAATCCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
20641762 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
20641827 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACGGGGAATGAACTTCATATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* ** *
20641892 CTGACGAAA-GAAGCGGGCGGATGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACG-AGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20641956 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCTCATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
** * * *
20642021 ATTTTTATCACTTGTAAATTCATACAATGGTCCTTTAAGCCATCATGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
20642086 CAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTGTGGTTCGGGATTTTTTAAACTTTT
390 CAACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
20642151 TTCAGAAGGCGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTC-GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * ** *
20642216 AAAAATTAACCTAAAAACTCGATTTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
20642281 TCGGACACTTTATTGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20642346 AGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20642411 ATCATGTGCGCACACCCCCCGACCTCCTCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCT-
713 ATCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
*
20642475 C--CGA-----C---GATGGTGCCCCGGTGAAGAAAAATGCGACACCAG-ACATGCCCGAGCCCA
777 CGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
20642529 GTAAGTGCT-ATCGCAACCCTCAGCCCCACCGAATCCTAAAATGGGAATGAACTCCGTAT
842 GCATGTGCTGCT-GCAACCCT------CA--G--T-C-----T-GG--T----T-CG-AT
* * ** * * ** *
20642588 GCTTAGATTGGGAATAAACTTTGTATGCCTAAGTCAACCCCTGGAACGAGTTTACGGGCGCT-AG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
20642652 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
20642716 CCTGCTATCGTAACCCTCGATCCAGTCTAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGC
129 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGC
* * * * *
20642780 CAACCGACGAAACGA----GCGGGCGGGCGGGTGGGCACTACACCGGCCAGAGAGATGGGGTGCA
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
20642841 CAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
20642906 CAATTTTTAT-GCTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCA
323 CCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** *
20642970 AGACAACTCGTTCTCTATTTTTCACGATTTTCGAAA-TGTTTTGTGGTTTGGGATTTTTTAAAAT
387 AGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAAT
* * * * *
20643034 TTTTTGGGAAGGATTTTTGGTCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCA
451 TTTTT-CGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
** *
20643099 CAAAAAAATTCAGCTAAAAACTCGATCTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * *
20643164 ATTTCGGACACTTTATTGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGC
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
20643229 GTGAGTTCTTGAGGTTCGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
20643294 CACATCATGTGCGCACACCCCCCGACCTCCTCGATCGTCGGAACCCAAAATGCCGTCGGTCAGGT
710 CACATCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCC-CAATGCCGCCGGTCAGGT
*
20643359 TCT-C--CGA-----C---GATGGTGCCCCGGTGAAGAAAAATGCGACACCAG-ACATGCCCGAG
773 TCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
20643412 CCCAGTAAGTGCT-ATCGCAACCCTCAGCCCCACCGAATCCTAAAATGGGAATGAACTCCGTAT
838 CCCAGCATGTGCTGCT-GCAACCCT------CA--G--T-C-----T-GG--T----T-CG-AT
* * * * * ** *
20643475 GCTTAGATTGGGAATAAACTTCGTATGCCTAAGTCAACCCCTGGAACGAGTTTACGGGCGCT-AG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
20643539 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
20643603 CCTGCTATCGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGC
129 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGC
* * * * *
20643667 CAACCGACGAAACGA----GCGGGCGGGCGGGTGGGCACTACACCGGCCAGAGAGATGGGGTGCA
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
20643728 CAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
20643793 CAATTTTTAT-GCTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
323 CCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** *
20643857 AGACAACTCGTTCTCTATTTTTCACGATTTTCGAAA-TGTTTTGTGGTTTGGGATTTTTTAAAAT
387 AGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAAT
* * * * * *
20643921 TTTTTGGGAAGGATTTTTGGTCCCAAACTTGATATACGTGATCCTTGTATTTTTGTTGGCATGCA
451 TTTTT-CGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
20643986 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
20644051 ATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGTGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
20644116 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCC
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
20644181 CACATCATGTGCGCACACCCCCCG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
710 CACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** * ** * * *
20644245 TCCGGCGATGCTCCGGCGATAGTGCCCCGACGAACAAAAATGCAGCACCAGCACATGCCCAAGCC
775 TCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
20644310 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATAT
840 CAGCATGTGCTGCTGCAACCCTCAGTCT-G---G---TT---C-------G--------AT
* * * * *
20644371 GCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGAGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20644436 CCTGCCAGAGGGGCGGGATGCACAAGCCGGAGATCGACCGGGTCCCCCTCTGCATGCTGCCGCGG
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-C-C-G
* * * *
20644501 ATCCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACCGGGAATGAA-TTCCGTATGCCTAA
127 ATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTT-CGTATGCCTAA
* * * * * * *
20644565 GCCAATCGATGAAATGAGCTGGCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGGATG
191 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
20644630 CGCAGGCCGTGGATCTGGTAGGCGTGGTTAGGTGGG-TTAGGCACATCTTCATATTTCTGCAT-C
256 CGCAAGCCGTGGATC-GATAGG-GTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
20644693 CAATGCCA-TTTTAGAGGCTTGTAAATTCATGCAATTGGTCCCTTAA-CCTTCACGTGAAG-TTC
318 CAATGCCATTTTTA-TGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *** *
20644755 ATGGCAAGACGACTCGTTTTCTA-TTTTCACGATTTCAAAAACTTTTTAACGGTTCTGGATTTTT
381 ATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGA--TTT
* * *
20644819 TTTAAAATTTTTTCGAAAGCAGTTTGGGCCCCAAACTTGGTATGATGTGATCCTTGTATATTT-T
443 TTTAAAATTTTTTCGAAAG-AGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTATTTTTGT
** * *
20644883 T-GCATGCAC-AAGGAA-TC-GATAGAAAACACGAAGTGTA-AAGA-TTTGTGA-CA-TTGAAAA
506 TGGCATGCACAAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20644940 AAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCT
570 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
20645005 TCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
635 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * ** *
20645070 GCACCCATCGCATATGATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCA
700 GCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCG
* * ** * * *
20645135 CCGATCAGGTTCTCTGGTGATGCTCCGAAGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCA
763 CCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCA
* * ** ** *
20645200 CATGCTCGAGCCCAGCCTGTGCTG-TCGCAACCCTTGGTCCAGTTTGAT
828 CATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCAGTCTGGTTCGAT
* * *
20645248 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
20645313 CGGCCAGAAGGGTGGGAAGCGCAAGCCGGGGATCGACCGGGTCCCTCTTTGCATGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
20645378 TACTACCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * **
20645443 CCGACGAAACGAGCGAACGGGCGGGCGGGCGAGCGGGCACTACGCCAGTCAGAGACATAGGATGC
196 CCGACGAAACGA--G--CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
20645508 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
20645573 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
20645638 AGACGACTTGTTTTC------T----ATTTTTGAAACTTTTTACGGTTCGAGATTTTCTAAAATT
387 AGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
20645693 TTTTCGAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGACGCAC
452 TTTTCGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
20645758 AAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
20645823 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTCAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20645888 TGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** **
20645953 ACATCATGTGTGCACACCCCCCG-GCCCCCTATCACCGGAACCCCAATGCCGCTAGTCAGGTTCT
711 ACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * **
20646017 CCGGCAATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATACGGTACCAGCACATGCATGAGCCC
776 CCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
20646082 AGCATGTGCTGCTGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
841 AGCATGTGCTGCTGCAACCC----T-CA----G----T---CT-GG--T----T-CG-AT
* * *
20646142 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20646207 CCGGCTAGAGGGGCGGGATGCGCAAGCCAGGAATCGA-CTGAGTCCCCCTCTACGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
20646271 CCTGCTGCCACAACCCTCGATCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
* ***
20646336 AACCGACGAAACGA--------GCGGGCGTGCGGGCACTACGCCGATTAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
20646393 AAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
20646458 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20646523 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGA-ATTTTCAAATTTT
389 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
** *
20646587 TTCGAAAGGAGTTTTGGAACCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
20646652 AACAAA-TCAGC-AAAAACCTCGAAGTGTACAAGATTTT
518 AA-AAATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTT
20646689 AGACTGAGAA
Statistics
Matches: 5202, Mismatches: 501, Indels: 364
0.86 0.08 0.06
Matches are distributed among these distances:
864 18 0.00
865 43 0.01
866 37 0.01
867 45 0.01
868 28 0.01
869 116 0.02
870 10 0.00
871 8 0.00
872 158 0.03
873 69 0.01
874 10 0.00
875 182 0.03
876 382 0.07
877 370 0.07
878 35 0.01
880 4 0.00
881 2 0.00
882 4 0.00
883 178 0.03
884 20 0.00
885 24 0.00
886 322 0.06
887 1034 0.20
888 2 0.00
889 3 0.00
890 6 0.00
891 133 0.03
892 149 0.03
893 30 0.01
894 4 0.00
895 209 0.04
896 85 0.02
897 53 0.01
898 3 0.00
899 155 0.03
900 78 0.01
901 378 0.07
902 531 0.10
903 37 0.01
904 91 0.02
905 53 0.01
906 78 0.01
907 25 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCTGCAACCCTCAGTCTGGTTCGAT
Found at i:20643901 original size:887 final size:886
Alignment explanation
Indices: 20643901--20646688 Score: 3058
Period size: 895 Copynumber: 3.1 Consensus size: 886
20643891 AATGTTTTGT
* * * * * *
20643901 GGTTTGGGATTTTTTAAAATTTTTTGGGAAGGATTTTTGGTCCCAAACTTGATATACGTGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
*
20643966 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
20644031 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCT
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
20644096 CAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
20644161 CCAAGTACCATCACCCATCCCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGTCGGAACCC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
* * * * *
20644225 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATAGTGCCCCGACGAACAAAAATGCAG
326 CAATGCCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGGCGAAGAAAAATGCGG
* * * **** * *
20644290 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
380 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-CCCCACCGATCCTAGACTG
* * *
20644355 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGA
444 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * * * *
20644420 GCGTGTGAGCGCTCAACCTGCCAGAGGGGCGGGATGCACAAGCCGGAGATCGACCGGGTCCCCCT
509 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
* * * * * *
20644485 CTGCATGCTGCCGCGGATCCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACCGGGAATGA
574 CTGCGTGCTG-C-C-GATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
* * * * * *
20644550 ATTCCGTATGCCTAAGCCAATCGATGAAATGAGCTGGCGGGCGGGCAGGCAGGCACTACGTCGGC
636 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G--GGCACTACGCCGGC
* *
20644615 CAGAGAGACGGGATGCGCAGGCCGTGGATCTGGTAGGCGTGGTTAGGTGGG-TTAGGCACATCTT
697 CAGAGAGACGGGATGCGCAAGCCGTGGATC-GATAGG-GTGG-TAGGTGGGTTTAGGCACATCTT
* * *
20644679 CATATTTCTGCAT-CCAATGCCA-TTTTAGAGGCTTGTAAATTCATGCAATTGGTCCCTTAA-CC
759 CATATTTCTACATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCC
* *
20644741 TTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGA-TTTCAAAAACTTTTTA
822 TTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTC-GAAACTTTTT-
20644803 AC
885 AC
* * * * *
20644805 GGTTCTGGATTTTTTTTAAAATTTTTTCGAAAGCAGTTTGGGCCCCAAACTTGGTATGATGTGAT
1 GGTTCGGGA--TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTA-GACGTGAT
* ** * *
20644870 CCTTGTATATTT-TT-GCATGCAC-AAGGAA-TC-GATAGAAAACACGAAGTGTA-AAGA-TTTG
63 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTG
* *
20644928 TGA-CA-TTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAA
127 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20644991 ATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
192 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * **
20645056 AGGGCCAAGTACCAGCACCCATCGCATATGATGTGCGCACACCCCCCCGGCCCCCCCGATCACCG
257 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCG
* * *
20645121 GAACCCCAATGCCACCGATCAGGTTCTCTGGTGATGCTCCGAAGATGGTGCCCTGGCGAAGAAAA
320 GAACCCCAATG---CCG-TC-GG---TCAGGT--T-CTCCGACGATGGTGCCCCGGCGAAGAAAA
* * ** *
20645186 ATGCGGCACCAGCACATGCTCGAGCCCAGCCTGTGCTGTCGCAACCCT-TG-------G-TCC-A
374 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGCCCCACCGATCCTA
*
20645241 G--T-----T----T--G-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
439 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * *
20645291 AATGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGTGGGAAGCGCAAGCCGGGGATCGACCGGGTC
504 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * * * * **
20645356 CCTCTTTGCATGCTACTGATCCTACTACCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAAT
569 CCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
20645421 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAACGGGCGGGCGGGCGAGCGGGCACTAC
634 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA--G--CGGGCGGGC--G-G-GCGGGCACTAC
* * * **
20645486 GCCAGTCAGAGACATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
691 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
20645551 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
756 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
20645616 CTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA----T-----TTTT-GAAACTTTTTA
821 CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTA
20645671 C
886 C
* *
20645672 GGTTCGAGATTTTCTAAAATTTTTTCGAAAGGAGTTTTGG-CCACAAACTTGGTAGACGTGATCC
1 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCC-CAAACTTGGTAGACGTGATCC
* * *
20645736 TTGTATTTTTGTTGGGACGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
20645801 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATG
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
20645866 TCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATAAAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * **
20645931 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGG-CCCCCTATCACCGGAACC
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACC
* * *
20645995 CCAATGCCG-CTAGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATAC
325 CCAATGCCGTC-GGTCAGGTTCTCC-G--A-----C---GATGGTGCCCCGGCGAAGAAAAATGC
* ** * * * ** * *
20646059 GGTACCAGCACATGCATGAGCCCAGCATGTGCTGCTGCAACCCT-TGGTCCAGTCTGATCTTAGA
378 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGCCCCA--CCGATCCTAGA
* *
20646123 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAACCATGAAA
441 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
20646188 CGAGCGTGCGGGCGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCCAGGAATCGA-CTGAGTCC
506 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCC
* * * * *
20646252 CCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCTGTCCGATCTTAGACTGGGAATG
570 CCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
* ***
20646317 AACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGTGCGGGCACTACGCCGATTAG
635 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
*
20646378 AGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
700 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
20646443 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
765 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
20646508 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAT
830 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* * * ** *
20646565 GGTTCGAGA-ATTTTCAAATTTTTTCGAAAGGAGTTTTGGAACCAAACTTGGTAGATGTGATCCT
1 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
20646629 TGTATTTTTGTTGGCATGCACAAAACAAA-TCAGC-AAAAACCTCGAAGTGTACAAGATTTT
66 TGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTT
20646689 AGACTGAGAA
Statistics
Matches: 1618, Mismatches: 173, Indels: 198
0.81 0.09 0.10
Matches are distributed among these distances:
858 4 0.00
859 2 0.00
861 6 0.00
864 22 0.01
865 41 0.03
866 9 0.01
867 13 0.01
868 24 0.01
869 95 0.06
870 10 0.01
871 10 0.01
872 155 0.10
873 70 0.04
874 9 0.01
875 43 0.03
876 150 0.09
877 77 0.05
878 1 0.00
879 4 0.00
880 4 0.00
881 2 0.00
882 1 0.00
883 169 0.10
884 1 0.00
885 1 0.00
887 8 0.00
889 1 0.00
891 8 0.00
892 101 0.06
893 26 0.02
894 3 0.00
895 178 0.11
899 153 0.09
900 8 0.00
901 9 0.01
902 91 0.06
903 15 0.01
904 11 0.01
905 11 0.01
906 41 0.03
907 19 0.01
910 8 0.00
912 2 0.00
913 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGCCCCACCGATCCTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CAACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
Found at i:20646153 original size:26 final size:26
Alignment explanation
Indices: 20646117--20646169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646107 CCAGTCTGAT
20646117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20646143 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20646169 C
1 C
20646170 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20646788 original size:26 final size:26
Alignment explanation
Indices: 20646759--20646811 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646749 ACGGTCCGAT
* *
20646759 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
* *
20646785 CTTAAACTGGGAATCAACTCTGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
20646811 C
1 C
20646812 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCCGTATG
Found at i:20647691 original size:26 final size:26
Alignment explanation
Indices: 20647662--20647714 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20647652 CTGATCCGAT
*
20647662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20647688 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20647714 C
1 C
20647715 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:20648937 original size:875 final size:887
Alignment explanation
Indices: 20646777--20649325 Score: 3547
Period size: 875 Copynumber: 2.9 Consensus size: 887
20646767 GAGAATGAAC
* * * *
20646777 TCCGTATGCTTAAACTGGGAATCAACTCTGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGG
1 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * * * * *
20646842 CGTTCAACCGACCAGAGGGGTAGAATGCGCAAGTCGAGGATCGACCGAGTCCCCCTCTGTGTGCC
66 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGCT
* * * * * * * *
20646907 ATCGATCCTGCTACCGTAGCCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
131 ACCGATCTTGCTGCCGCAACCCTCGGTCTGGTGCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
20646972 TAAGCTAACCGACGGAACAAGCAGGCGGACGGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGG
196 TAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCGGGC-GGCACTACGCCGGCCAGAGAGATGG
* * * *
20647037 GATGCACAAGCTGTAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * *
20647102 CTAATGCCATTTTTGTGGCTTGTAACTTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
20647167 TGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTGAAA-TGTTTTACGGTTCGGGATTTTTT
389 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCAGGATTTTTT
* *
20647231 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGAC
453 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGAC
* *
20647296 ATGCACAAAACAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTAACCATTTGAAAAAAGTG
518 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * * *
20647361 TCCCCATTCCAAACATTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAA
583 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
20647426 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGTCAAGTACCAGCACC
648 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
20647491 CATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGCCGGAACCCTAATCCTGTCGATTA
713 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATCCTGTCGATCA
* * * *
20647556 GGTTCTTCGACGATGCTCTGTCGATGGTGCCTCAGCAAAGAAAAATGCGGCACCAGCACATGCCT
778 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCT
20647621 AAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAA
843 AAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTG---CGATC----AC--GG-A-G-A
* *
20647679 CTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGG
1 -TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * * *
20647744 GCGCTTAGTCTGCCAGAGGGGCGGGATGCGCAA-TCGGGGATCGACCGGGTCCCCCTCTGTGTGC
65 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGC
* * *
20647808 TACCGATGTTGCTGCTGCAACCCTCGGTCTGGTGCGATCTTAGACTGGAAATGAACTCCGTATGC
130 TACCGATCTTGCTGCCGCAACCCTCGGTCTGGTGCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
20647873 CTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGATGG
195 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGATGG
20647938 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
20648003 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCGCGTGAAGTTCCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
20648068 TGGCAAGAGGACTCGTTTTCTGTTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
389 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
* * * *
20648133 AAACTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGCTGGCA
454 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACA
* * **
20648198 TGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTAGGTGACCATTTGAAAAAAGTGT
519 TGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
20648263 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
584 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
20648328 GGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
649 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
20648393 ATCGCAGATCA-GTGCGTACA-CCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCC-GTCGGTC
714 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAAT-CCTGTCGATC
** * * *
20648455 AGGTTCTCCGGTGATGCTCCGACTATGGTGCCCC-GACGAAGAAAAATGTGGCACCAGCACATG-
777 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG-CAAAGAAAAATGCGGCACCAGCACATGC
* * *
20648518 CTCGAGCCCAGCTTGTGCTGTCGCAA-CC-C-TC-G-G-TC-C-G-G-
841 CT-AAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGCGATCACGGAGA
*
20648556 TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
1 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * * * *
20648619 TGCTCAGCCGGCCAGAGGTGCAGGATGCACAAGCCGGGGATCAACCGAGTCCCCCTCTGCGTGCT
66 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGCT
* *
20648684 GCCGATCTTGCTGCCGCAACCCTCGATCTGGTGCGATCTTAGACTGGGAATGAACTCCGTATGCC
131 ACCGATCTTGCTGCCGCAACCCTCGGTCTGGTGCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
20648749 TAAGCCAACCAACGAAACGAGCGGGTGGGCGAGCGGGCGGTCACTACGCCGGCCAGAGAGATGGG
196 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGG-CACTACGCCGGCCAGAGAGATGGG
* * * **
20648814 ATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGC
260 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
20648879 CAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
325 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
20648944 GGCAAGATGAATCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGATTCAGGATTTTTTAA
390 GGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
** * * *
20649009 AATTTTTTCGGCTGGAGTTTTGGCCCCAAACTTTGTAGA-AGTGATCCTTTTATTTTTGTTGTCA
455 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGACA
* ** *
20649073 TGCACAAAAAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCGGTTCAAAAAAGTGT
519 TGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
20649138 CCGCATTTCAGACACTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGG
584 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
20649203 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCC
649 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
20649267 ATCGCACATGATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATCCT
714 ATCGCACATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATCCT
20649326 ACCGGTAGAC
Statistics
Matches: 1476, Mismatches: 156, Indels: 53
0.88 0.09 0.03
Matches are distributed among these distances:
874 118 0.08
875 544 0.37
876 4 0.00
877 2 0.00
878 23 0.02
879 7 0.00
882 1 0.00
885 1 0.00
890 2 0.00
891 1 0.00
895 1 0.00
896 2 0.00
898 1 0.00
899 17 0.01
900 102 0.07
901 460 0.31
902 108 0.07
903 82 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGTGTGCT
ACCGATCTTGCTGCCGCAACCCTCGGTCTGGTGCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGATGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATG
CACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATCCTGTCGATCAGGT
TCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCTAAG
CCCAGCATGTGCTGCCGCAACCCTCGTCTGCGATCACGGAGA
Done.