Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 116 of 117
Found at i:20649487 original size:4 final size:4
Alignment explanation
Indices: 20649446--20649583 Score: 65
Period size: 4 Copynumber: 34.5 Consensus size: 4
20649436 TCTTTTGTAT
* *
20649446 TTTA -TTA TTTA -TTA TTATA TGTA TATT- TTTA CTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA
* * * * * *
20649493 TTTA TTTA TTT- TTCTA TTAA TGTT- TATA TGTA TTTTA TTTA TATA GTTC
1 TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA TTTA
* * *
20649542 TATA TTTA TTATA TATTA -TAA TTTA TTTA TTT- TTTT TTTA TT
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TT
20649584 ATTATTTTTC
Statistics
Matches: 100, Mismatches: 20, Indels: 28
0.68 0.14 0.19
Matches are distributed among these distances:
3 16 0.16
4 68 0.68
5 15 0.15
6 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:20649565 original size:17 final size:19
Alignment explanation
Indices: 20649526--20649568 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
20649516 TTATATGTAT
*
20649526 TTTATTTATATAGTTCTATA
1 TTTA-TTATATAGTTATATA
20649546 TTTATTATATA-TTATA-A
1 TTTATTATATAGTTATATA
20649563 TTTATT
1 TTTATT
20649569 TATTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 4 0.18
19 7 0.32
20 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTATTATATAGTTATATA
Found at i:20650235 original size:20 final size:20
Alignment explanation
Indices: 20650200--20650237 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20650190 TCCGACGAAG
* *
20650200 AAACCCAGATTTCGATGACA
1 AAACCCAGAATCCGATGACA
20650220 AAACCCAGAATCCGATGA
1 AAACCCAGAATCCGATGA
20650238 ATCTTCAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (20 bp):
AAACCCAGAATCCGATGACA
Found at i:20650636 original size:17 final size:16
Alignment explanation
Indices: 20650602--20650641 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20650592 TTAGATTAGG
*
20650602 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
20650618 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
20650635 TTTATTT
1 TTTATTT
20650642 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:20650648 original size:17 final size:17
Alignment explanation
Indices: 20650628--20650675 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
20650618 TTTATCTTAA
20650628 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
20650644 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
20650662 TTTCTATTTTTATT
1 TTT-TATTTTTATT
20650676 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:20650675 original size:14 final size:14
Alignment explanation
Indices: 20650628--20650685 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20650618 TTTATCTTAA
20650628 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
20650640 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
20650654 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
20650669 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
20650683 TTT
1 TTT
20650686 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:20650690 original size:17 final size:17
Alignment explanation
Indices: 20650651--20650690 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
20650641 TTTGTTTTAC
*
20650651 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
20650668 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
20650682 TTTTCTTTA
1 TTTTCTTTA
20650691 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:20650834 original size:59 final size:60
Alignment explanation
Indices: 20650693--20650929 Score: 335
Period size: 58 Copynumber: 4.0 Consensus size: 60
20650683 TTTCTTTAAA
20650693 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTCCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
** *
20650754 TGGAAATCAAAGTTT-CAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTAT-CT
1 TAAAAATCAAA-TTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTT-TCCT
20650814 TAAAAAT-AAATTTCC-AAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTCCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
20650872 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
20650930 CTACACAAGA
Statistics
Matches: 161, Mismatches: 7, Indels: 18
0.87 0.04 0.10
Matches are distributed among these distances:
57 1 0.01
58 56 0.35
59 45 0.28
60 48 0.30
61 11 0.07
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20650859 original size:58 final size:60
Alignment explanation
Indices: 20650693--20650929 Score: 340
Period size: 59 Copynumber: 4.0 Consensus size: 60
20650683 TTTCTTTAAA
* *
20650693 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAGTTT-CAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
** *
20650754 TGGAAATCAAAGTTTCAAAAAAAATA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTAT-CT
1 TAAAAATCAAAGTTTCAAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTT-TCCT
*
20650814 TAAAAAT-AAA-TTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAGTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
20650872 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAGTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
20650930 CTACACAAGA
Statistics
Matches: 160, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
57 1 0.01
58 47 0.29
59 59 0.37
60 40 0.25
61 13 0.08
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAAGTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:20654363 original size:26 final size:26
Alignment explanation
Indices: 20654319--20654368 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20654309 GACTTAGGCG
20654319 TACGGAGTTAAATCACAGTCTAAGCA
1 TACGGAGTTAAATCACAGTCTAAGCA
* * *
20654345 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTAAATCACAGTCTAAG
20654369 ATCAAACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTAAATCACAGTCTAAGCA
Found at i:20657500 original size:900 final size:895
Alignment explanation
Indices: 20655216--20657764 Score: 3739
Period size: 900 Copynumber: 2.8 Consensus size: 895
20655206 GTTGACTTAG
* * * * * * * * *
20655216 GCATACGGAGTTTATTCCCAATGTAAGATCAGACAGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-GCAGCACATGTTGGG
* ** *
20655281 ATCGTCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATCGCCGGAGA
* *
20655346 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
20655411 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20655476 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
20655541 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
20655606 TGCTTGCCAAAAAAAATGCAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAA
* * * * * * *
20655671 ATTTGAAAAAAATCCCAAACTGCAAAAA-TTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTC
451 ATTT-TAAAAAATCTCGAACCGTAAAAAGTTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTC
20655735 TTGCCATGAAACTTCAT-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 TTGCCATGAAACTTC-TCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
20655799 GCATTGGCACATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
20655864 GCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCTGCTCGCTCGTTTCATCGGTT
643 GCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC--CT-GCTCGTTTCATCGGTT
** * **
20655929 GGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGATTGGATAGGACCGAGGATTGTGGCAGCAA
704 GGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACAGGACCGAGGATTACGGCAGCAA
* *
20655994 GATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
768 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
**
20656059 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
833 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
20656122 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCACAT-TCTGG
1 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACG-CAGCACATGT-TGG
* * *
20656186 GCTCGGGCATGTGCTAGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAG
* * * *
20656251 AACCTGACCGACGGTATTGGGGTTTCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
20656316 CGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATGAAACCTCGA-AACTCAC
193 CGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20656380 ACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
** *
20656445 AAGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
20656510 TGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCAAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTCT-GAAAAA
* * *
20656575 ATTTTAAAAAATCTCGAAGCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAG-CTGTCT
451 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC-GTCT
20656639 TGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
20656704 ATTGGCATGCAGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
20656769 GCATCACGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCG-CCTGCTCGTTTCGTTGGTTGGCTT
645 GCATC-CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTGCTCGTTTCATCGGTTGGCTT
* * *
20656833 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTACGGTAGCAAGATCG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGATTACGGCAGCAAGATCG
* * **
20656897 GCAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
773 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
*
20656962 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
20657020 GCATACGGACTTCATTCTCGGTCTATGATCGGATCGGACCGAGGGTTACGCAGCACATGTTGGGC
1 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGCAGCACATGTTGGGC
* * * * *
20657085 TCGGGCATGTGCTGGTGTCACGTTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGAA
* * * * *
20657150 CCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGAGTGGGGTGTGCGCAAAGGATGTA
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGTG
* *
20657215 CGATGGCTGCTGGTACTTGGCCTGTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20657280 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
20657345 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20657410 TGCATGCCAAAAAAAATAAAAGCATCACCTCTACCAGGTTTGGGGCCAAAACTCCATCTGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAA
* * *
20657475 ATTTTTAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTAGTCATCTT
451 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20657540 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
20657605 TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
20657670 CATGCCGTCTCT-TGGCCGGCGTAGTGCCCTCCCATCCGCCCGCCCT-CTCGTTTCATCGGTTGG
646 CAT-CCGTCTCTCTGGCCGGCGTAGTG-CC-CGC--CCGCCCGCCCTGCTCGTTTCATCGGTTGG
* * *
20657733 CTTAGGCATATGGAATTCATTCCTAGTCTAAG
706 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20657765 CATATGGAGT
Statistics
Matches: 1477, Mismatches: 143, Indels: 49
0.88 0.09 0.03
Matches are distributed among these distances:
897 104 0.07
898 194 0.13
899 121 0.08
900 380 0.26
901 6 0.00
902 4 0.00
903 252 0.17
904 195 0.13
905 76 0.05
906 144 0.10
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGCAGCACATGTTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTCTGAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTGCTCGTTTCATCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGATTACGGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:20657768 original size:26 final size:26
Alignment explanation
Indices: 20657738--20657790 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657728 GTTGGCTTAG
20657738 GCATATGGAATTCATTC-CTAGTCTAA
1 GCATATGGAATTCATTCTC-AGTCTAA
*
20657764 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAATTCATTCTCAGTCTAA
20657790 G
1 G
20657791 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAATTCATTCTCAGTCTAA
Found at i:20660265 original size:901 final size:895
Alignment explanation
Indices: 20657706--20662706 Score: 6103
Period size: 901 Copynumber: 5.6 Consensus size: 895
20657696 CCCTCCCATC
* * * * * * *
20657706 CGCCCGCCCTCTCGTTTCATCGGTTGGCTTAGGCATATGGAATTCATTCCTAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
* *
20657771 GAGTTCATTCTCAGTCTAAGATCGGACCGGATCGAGGGTTGC-GACAGCACATGCTGGGCTCGGG
66 GAGTTCATTC-CAGTCTAAGATCGGA-TGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGG
* ** *
20657835 CTTGTGCTGGTGCCGTATTTTTCTTCGTCAGGGGCACCA---TC---G--T---CGGAGAACCTG
128 CATGTGCTGGTGCCACATTTTTCTTCG-C-CGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * *
20657889 ACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGG-GTGCACACATGATGTGTGATGG
191 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
20657952 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAAAACTCACACCCCC
256 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
20658017 TTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAATGGGGAC
321 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
20658082 ACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
386 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
20658147 CCACCAAAAGTACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCTGGAAAAATTTTA
451 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GGAAAAATTTTA
* * * * *
20658212 AAAAATCTTGAACCGCAAAAAGTTTCGAAAATCGTGGAAAAGAGAAAACGAGTCATCTTGCCATG
515 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
20658277 AAACTTCACGTGAAGGCTTAAGGGACCATTGTTTTAATTTACAAGCCATAAAAATGGCATTGGCA
580 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
20658342 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCC
645 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
20658407 GTCTCTCTGGCCGACGTAGAGCCCGCCCTCCCGCC-CGCTCGTTTTGTCGGTTGGCTTAGGCATA
710 GTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *** * *
20658471 CAGAGTTCATTTCCAGTCTAAGATTAGACTGAAC-CGAGGGTTGTGGTAGTAGGATCGACAGCAC
775 CGGAGTTCATTCCCAGTCTAAGATTAGACTGAACTAGA-GGTTCACGTAGCAGGATCGGCAGCAC
* * * *
20658535 ACAGAGGGGGGCCCGACCGAT-CCTCGATTTACGCATCCCGCCCCTCTGGCCGGCTGAG
839 GCAGAGGGGGACCCG-CCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * *
20658593 CACCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCACACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
20658658 GAGTTCATTCCTAGTATAAGATCGGATCAGACCGAGGGTGGCGGTAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCC-AGTCTAAGATCGGAT-GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
** * * * *
20658723 ATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCACCATCGGAGCAACGCAGGAGAACCTGAC
129 ATGTGCTGGTGCCACATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
20658788 TGGCAGCATTGGGGTTTCGACGATCAGAGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGG
193 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
20658853 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAACTCATACCTCCT
257 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
20658918 TAAAGAGCATTTTCAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
322 TAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
20658983 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATG
386 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** *
20659048 CTAACAAAAATACAAGGATCACGTCTACCAAGACTAGGGCCAAAACTCCTTTC-GAGAAAATTTT
451 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGGA-AAAATTTT
* * * *
20659112 AAAAAATCTCAAACCAC-GAAA---TCAAAAATCGTG-AAAA-A-AAAATGAGTCGTCTTGCCAT
514 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
20659170 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
579 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
20659235 -TCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATC
644 AT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
20659299 CCGTCTCTCTAGCCGACGTAGCGCTCGCCCGCTCGCCTGCC-CGTTCGTTTCGTCGGTTGGCTTA
708 CCGTCTCTCTGGCCGACGTAGTGCTCGCCCGC-C-CC--CCGCGCTCGTTTCGTCGGTTGGCTTA
* *
20659363 GGCATGCGGAGTTCATTCCCAGTCTAAGATTAGACTGAACTAGAGG-TCACGATAGTAGGATCGG
769 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGAACTAGAGGTTCACG-TAGCAGGATCGG
* * * *
20659427 TAGCACGCAGAGGGGGACCCTGCCGATCCCTGATTTGTGCATCCCGCTCCTCTGGCCGGCTGAG
833 CAGCACGCAGAGGGGGACCC-GCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
20659491 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCTTTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
* * * * * *
20659556 GAGTTCATTCCAGTCCAAGATCAGACTAGATCGAGGGTTGTAGCAGCACATGCTGGGCTCTGGCA
66 GAGTTCATTCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
** * * *
20659621 TGTGCTGGTGCTGCATTTTTCTTCACCGAGGCACCATCGTCGAAGCATCGCCGGGGAACCTGACC
130 TGTGCTGGTGCCACATTTTTCTTCGCCG-GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
20659686 GACGACGTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGATGGGTG
194 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20659751 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * **
20659816 AATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGATGCT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20659881 TTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGTGCATGAC
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
20659945 AACAAAAATACAAGGATCATGGT-TACCAAGTTTGGGGCCAAAACTCCTTAC-GAAAAATTTTAA
453 AACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGGAAAAATTTTAA
* * *
20660008 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGGAAAGTAGAAAACAAGTCGTCTTGCCATGA
516 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
20660073 AACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
20660138 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
646 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * **
20660203 TCCCTCTGGCCGGCGTAGTGCTCGCCCGCCCACCCGCTTGCTCATTTCGTCGGTACGCTTAGGCA
711 TCTCTCTGGCCGACGTAGTGCTCGCCCGCCC-CCCGC--GCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
20660268 TACGGAGTTCATTCCCAGTCCAAGATCAGACCGGA-TCGAGGGTTGCA-GTAGCAAGATTGGTAG
773 TACGGAGTTCATTCCCAGTCTAAGATTAGACTGAACTAGA-GGTT-CACGTAGCAGGATCGGCAG
* * * * ** *
20660331 CACGCAAAGGGGGACCCTACCGATCCCCGACTTGCGAATCCCGCCCCTCTGGTTGACTGAG
836 CACGCAGAGGGGGACCC-GCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
20660392 CGCCCGCACGCTCGTTTCATGGTTTGACTT-GGCATACGTG-GTTCATTCCCAGTCTAAGCATAT
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATG-GAGTTCATTCCCAGTCTAAGCATAT
* * * * * *
20660455 GGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGC-GATAGCAAATCCTTGGCTAGG
65 GGAGTTCATT-CCAGTCTAAGATCGGAT-GGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGG
* * ** * *
20660519 GCATGTGCTGGTGCCACATTTTTCTTTGTCGGGCACCATCACCAGAGCATCACCGGAGAACCTGA
127 GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
20660584 CCGGCTGCATTAGGGTT-CTAGCGATCAGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATG
192 CCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
20660648 GGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
255 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
20660713 CCTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAATTGTATGAAATGGGGA
320 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
20660778 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCAT
385 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * **
20660842 GCCAGCAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAAACACCTTCCAAAAAAATTTT
450 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGGAAAAATTTT
* * *
20660907 AAAAAAATCTCGGACC-CTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
514 -AAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
20660971 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CAGTAAAAATGGCATT
577 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATT
* * *
20661035 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTACGCA
641 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** * *
20661100 TCCCATCTTTTTGGCCGAAATA--G-T-GCCCGCCCGCC-CGCTCGTTTCGTCGGTTAGCTTAGG
706 TCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCCGCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
20661160 CATACGGAGTTCATTCGCAGTCTAAGA-TCGAATCAGACCAG-GGTTGC-CGTAGCAGGATCGAC
771 CATACGGAGTTCATTCCCAGTCTAAGATTAGACTGA-ACTAGAGGTT-CACGTAGCAGGATCGGC
* ** * * *
20661222 AACACGCAGATAGGGACCCGGCCGATCCCCGGCTTGCGCATCCC-CCCCTTCTGGCCGGCTGAA
834 AGCACGCAGAGGGGGACCC-GCCGATCCCTGACTTGCGCATCCCGCCCC-TCTGGCCGGCTGAG
* * * * * *
20661285 C-ACCGCACGCTTGTTTCGCGAGTTGACTTAGGCATACGGAGTTCATT-CC---C-AATC-TA--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
** * **
20661341 -AG---A-T-C-G-----GATC----GGACCGAGGGTCACGGCAGCACATGCTGGGCTCGACCAT
66 GAGTTCATTCCAGTCTAAGATCGGATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
* * * *
20661390 GTGCTGGTGCCATATTTTTCTTTGTCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
131 GTGCTGGTGCCACATTTTTCTTCGCCG-GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * ** * *
20661455 GCGGTATTAGGGTTTTGAAGATCGGGGGGGCCGTGGGGGTGTGCGCGCATGATGTGCGATGGGTG
195 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
*
20661520 CTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
20661585 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
20661650 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * * *
20661715 AAAAAAATAAAAGCATCACCTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAGGAGTTTAAAA
454 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGGAAA-AATTTTAAAA
* * * *
20661780 AATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
518 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
20661845 CTTCATGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGC
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
20661910 AAAAATATAAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
648 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
20661975 TCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCC-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
713 TCTCTGGCCGACGTAGTGCTCGCCCGCCCCCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * *
20662039 AGTTCATTCCTAGTCTAAGATCGGAC-CAGACTA-AGGATT-ATGGCAGCAGGATCGGCAGCACG
778 AGTTCATTCCCAGTCTAAGATTAGACTGA-ACTAGAGG-TTCA-CGTAGCAGGATCGGCAGCACG
** * * *
20662101 CAGA-GGGGACCCGATAGATCCCTGACTTGTGCATCCCGCCCCACTGGCCAGCTGAG
840 CAGAGGGGGACCCG-CCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
20662157 GGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCCGTCTAAGC-T-TG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
* * *
20662220 CGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCACATGCT----T---
66 -G-AGTTCATTCC-AGTCTAAGATCGGA-TGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * *
20662278 G-A-------GTGCCACATTTTTCTGCGCCGGGCACCATCGTCGGAGCTTCGTCGGAGAACCTGA
127 GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* *
20662335 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGTGTACGCACATGATGTGCGATGGG
192 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * * *
20662399 TGCTGGTATTTGGCTCTTCTATTGGCCCTCTATCTCTCATCAAACCTTGAGAACTCACACACCCT
257 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
20662464 AAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
322 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
20662529 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGC
387 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
20662594 CAA-AAAAAGTACAAGGATCACGTCTACTAAATTTGGGGCCAAAAATCCTTCTGGAAAAATTTTA
452 CAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GGAAAAATTTTA
* * * *
20662658 AAAAATCTGGAACCGTAAAAAGTTTGAAAAATTGTGAAAAATAGAAAAC
515 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
20662707 AGGTCTAACT
Statistics
Matches: 3558, Mismatches: 439, Indels: 240
0.84 0.10 0.06
Matches are distributed among these distances:
867 63 0.02
868 429 0.12
869 74 0.02
870 1 0.00
871 1 0.00
872 106 0.03
873 70 0.02
874 2 0.00
877 2 0.00
878 5 0.00
880 6 0.00
881 298 0.08
882 6 0.00
883 60 0.02
884 19 0.01
885 1 0.00
886 11 0.00
887 133 0.04
888 4 0.00
889 4 0.00
891 1 0.00
892 30 0.01
893 81 0.02
894 246 0.07
895 159 0.04
896 104 0.03
897 169 0.05
898 222 0.06
899 43 0.01
900 254 0.07
901 754 0.21
902 198 0.06
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATG
GAGTTCATTCCAGTCTAAGATCGGATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGGAAAAATTTTAAAAAAT
CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCTCGCCCGCCCCCCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATTAGACTGAACTAGAGGTTCACGTAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:20660452 original size:26 final size:26
Alignment explanation
Indices: 20660423--20660475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20660413 GTTTGACTTG
20660423 GCATACGTG-GTTCATTCCCAGTCTAA
1 GCATACG-GAGTTCATTCCCAGTCTAA
*
20660449 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20660475 G
1 G
20660476 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20663824 original size:26 final size:26
Alignment explanation
Indices: 20663787--20663839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20663777 GTTGACTTAG
*
20663787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20663813 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20663839 G
1 G
20663840 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20664223 original size:137 final size:139
Alignment explanation
Indices: 20663971--20664224 Score: 395
Period size: 137 Copynumber: 1.8 Consensus size: 139
20663961 GGGTTCCAGC
* * *
20663971 GATCGGGGGGGCCGGGGGGCGCTGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
1 GATCGGGGGGGCCGGCGGGCGC-GTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCT
* **
20664036 TATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACACCTTCTTAAAGAACTAAGCATTA
65 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAACTAAGCATTA
20664101 GGGTTTCGAT
130 GGGTTTCGAT
20664111 GATCGGGGGGGCCGGCGGG-G-GTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTT
1 GATCGGGGGGGCCGGCGGGCGCGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTT
** * *
20664174 ATATTGGCCCCCTATCCCTCATCAAACCTCGTGAAGTCACACCCCCTTAAA
66 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAA
20664225 AGAATTTGAG
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
137 85 0.82
139 1 0.01
140 18 0.17
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (139 bp):
GATCGGGGGGGCCGGCGGGCGCGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAACTAAGCATTAG
GGTTTCGAT
Found at i:20664867 original size:26 final size:26
Alignment explanation
Indices: 20664831--20664883 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20664821 GTTGACTTAG
20664831 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20664857 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20664883 G
1 G
20664884 TCGGACCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20665535 original size:59 final size:59
Alignment explanation
Indices: 20665468--20665764 Score: 429
Period size: 58 Copynumber: 5.0 Consensus size: 59
20665458 TGTTCTTGTG
20665468 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* *
20665527 TAAGGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGGAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* * * * *
20665585 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTT
* * *
20665645 CAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ACCTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* * *
20665702 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTT-GAAAATTT-ATTTT
20665763 TA
1 TA
20665765 TTTAAAGAAA
Statistics
Matches: 212, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
57 32 0.15
58 72 0.34
59 61 0.29
60 40 0.19
61 7 0.03
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
Found at i:20665687 original size:117 final size:117
Alignment explanation
Indices: 20665468--20665761 Score: 441
Period size: 117 Copynumber: 2.5 Consensus size: 117
20665458 TGTTCTTGTG
* **
20665468 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGG
1 TAAGGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGG
* *
20665532 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTT
65 AAAATTGATACTTTCAACTTTTCCCAAAAAATACTTTTTTGAAAATTTATTTT
* *
20665585 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGG
1 TAAGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGG
*
20665650 AAAATTGATACTTTCAACTTTTCCTC-AAAAA-CCTTTTTTGAAAATTTATTTT
65 AAAATTGATACTTTCAACTTTTCC-CAAAAAATACTTTTTTGAAAATTTATTTT
*
20665702 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
20665762 TTATTTAAAG
Statistics
Matches: 162, Mismatches: 10, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
116 3 0.02
117 109 0.67
118 49 0.30
119 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGA
AAATTGATACTTTCAACTTTTCCCAAAAAATACTTTTTTGAAAATTTATTTT
Found at i:20665791 original size:14 final size:14
Alignment explanation
Indices: 20665772--20665801 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
20665762 TTATTTAAAG
*
20665772 AAAATAGAATAATA
1 AAAATAGAAAAATA
20665786 AAAATAGAAAAATA
1 AAAATAGAAAAATA
20665800 AA
1 AA
20665802 GAAAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20665799 original size:17 final size:17
Alignment explanation
Indices: 20665779--20665829 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
20665769 AAGAAAATAG
20665779 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
*
20665796 AATAAAGAAAAATAAAAC
1 AAT-AATAAAAATAAAAC
*
20665814 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
20665830 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:20665838 original size:17 final size:16
Alignment explanation
Indices: 20665782--20665855 Score: 58
Period size: 17 Copynumber: 4.4 Consensus size: 16
20665772 AAAATAGAAT
*
20665782 AATAAAAATAGAAAAATA
1 AATAAAAAT--AAAATTA
* **
20665800 AAGAAAAATAAAACAAA
1 AATAAAAATAAAA-TTA
20665817 AATAAAAATAAAATTA
1 AATAAAAATAAAATTA
* *
20665833 AGATAAAAAGAATATTA
1 A-ATAAAAATAAAATTA
20665850 AATAAA
1 AATAAA
20665856 CCTAATCTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
16 11 0.23
17 28 0.60
18 8 0.17
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (16 bp):
AATAAAAATAAAATTA
Found at i:20665896 original size:9 final size:9
Alignment explanation
Indices: 20665871--20665917 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
20665861 TCTAATAAAT
20665871 AAAAAAT-A
1 AAAAAATAA
*
20665879 AACAAATAA
1 AAAAAATAA
20665888 AAAAAATAA
1 AAAAAATAA
20665897 AAAAAATTCAA
1 AAAAAA-T-AA
20665908 AAAAAA-AA
1 AAAAAATAA
20665916 AA
1 AA
20665918 CCTGGAGCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 10 0.29
9 15 0.44
10 1 0.03
11 8 0.24
ACGTcount: A:0.85, C:0.04, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAATAA
Found at i:20665898 original size:24 final size:24
Alignment explanation
Indices: 20665867--20665917 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
20665857 CTAATCTAAT
*
20665867 AAATAAAAAATAA-ACAAATAAAAA
1 AAATAAAAAA-AATACAAAAAAAAA
*
20665891 AAATAAAAAAAATTCAAAAAAAAA
1 AAATAAAAAAAATACAAAAAAAAA
20665915 AAA
1 AAA
20665918 CCTGGAGCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.12
Consensus pattern (24 bp):
AAATAAAAAAAATACAAAAAAAAA
Found at i:20666300 original size:20 final size:19
Alignment explanation
Indices: 20666252--20666301 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
20666242 CGGTTGAAGA
* *
20666252 TTCACTGGATTCTGGGTTT
1 TTCACCGGAATCTGGGTTT
*
20666271 TGTCATCGGAATCTGGGTTT
1 T-TCACCGGAATCTGGGTTT
20666291 CTTCACCGGAA
1 -TTCACCGGAA
20666302 GCTCACTGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.38
Consensus pattern (19 bp):
TTCACCGGAATCTGGGTTT
Found at i:20666915 original size:17 final size:17
Alignment explanation
Indices: 20666882--20666946 Score: 55
Period size: 17 Copynumber: 3.8 Consensus size: 17
20666872 CAATAAGATA
*
20666882 AATAA-AAA-AAATAAT
1 AATAATAAATAAATTAT
20666897 AATAATAAATAAATTAT
1 AATAATAAATAAATTAT
*
20666914 AAT-ATATAATAAATATAG
1 AATAATA-AATAAAT-TAT
20666932 AACTATATAAATAAA
1 AA-TA-ATAAATAAA
20666947 ATACATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 5 0.12
16 6 0.15
17 16 0.39
18 4 0.10
19 1 0.02
20 6 0.15
21 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AATAATAAATAAATTAT
Found at i:20666955 original size:17 final size:17
Alignment explanation
Indices: 20666890--20666959 Score: 58
Period size: 17 Copynumber: 4.1 Consensus size: 17
20666880 TAAATAAAAA
20666890 AAATAATAATA-ATAAAT
1 AAAT-ATAATATATAAAT
20666907 AAATTATAATATAT-AAT
1 AAA-TATAATATATAAAT
20666924 AAATATAGAACTATATAAAT
1 AAATAT--AA-TATATAAAT
*
20666944 AAA-AT-ACATATAAAT
1 AAATATAATATATAAAT
20666959 A
1 A
20666960 TTAACAAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
15 9 0.20
16 4 0.09
17 15 0.33
18 5 0.11
19 7 0.15
20 6 0.13
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (17 bp):
AAATATAATATATAAAT
Found at i:20667009 original size:27 final size:27
Alignment explanation
Indices: 20666969--20667030 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
20666959 ATTAACAAAA
*
20666969 AAAATAAATAAATAAGTAA-AAATATACAT
1 AAAAT-AAT-AATAAATAATAAA-ATACAT
*
20666998 ATAATAATAATAAATAATAAAATACAT
1 AAAATAATAATAAATAATAAAATACAT
20667025 AAAATA
1 AAAATA
20667031 CAGAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 19 0.66
28 6 0.21
29 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAATAATAATAAATAATAAAATACAT
Found at i:20667283 original size:20 final size:20
Alignment explanation
Indices: 20667235--20667283 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
20667225 TCATTTTTTG
20667235 TTTTTTTTTGTGTCTTTCTT
1 TTTTTTTTTGTGTCTTTCTT
* * * *
20667255 TTGTTTTTTGTTTTTTTGTT
1 TTTTTTTTTGTGTCTTTCTT
20667275 TTTTTTTTT
1 TTTTTTTTT
20667284 TACCAAAGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.86
Consensus pattern (20 bp):
TTTTTTTTTGTGTCTTTCTT
Found at i:20667424 original size:42 final size:41
Alignment explanation
Indices: 20667291--20667672 Score: 611
Period size: 42 Copynumber: 9.1 Consensus size: 41
20667281 TTTTACCAAA
* *
20667291 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
*
20667334 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
20667375 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
*
20667417 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATT
*
20667459 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* *
20667500 CCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
*
20667542 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATT
20667584 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* *
20667625 GCTCCTCTAAACGGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
20667667 GCTCCT
1 GCTCCT
20667673 TGACAATCAT
Statistics
Matches: 320, Mismatches: 14, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
41 110 0.34
42 182 0.57
43 28 0.09
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:20667435 original size:83 final size:82
Alignment explanation
Indices: 20667291--20667672 Score: 602
Period size: 83 Copynumber: 4.6 Consensus size: 82
20667281 TTTTACCAAA
* *
20667291 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
20667356 CGACTTTGAAAAATAAATT
64 CGACTTTGAAAAATAAATT
20667375 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
*
20667440 GACTTTGAGAAAGTAAATT
65 GACTTTGA-AAAATAAATT
* *
20667459 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTCCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
* *
20667524 ACTTTTGGAAAGTAAATT
66 AC-TTTGAAAAATAAATT
*
20667542 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATTGCTCCTCTAAACAGAGGCACCAC
*
20667607 GACTTTGGAAAATAAATT
65 GACTTTGAAAAATAAATT
* *
20667625 GCTCCTCTAAACGGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATTGCTCCT
20667673 TGACAATCAT
Statistics
Matches: 282, Mismatches: 11, Indels: 11
0.93 0.04 0.04
Matches are distributed among these distances:
83 173 0.61
84 105 0.37
85 4 0.01
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAATAAATT
Found at i:20667514 original size:125 final size:125
Alignment explanation
Indices: 20667291--20667672 Score: 692
Period size: 125 Copynumber: 3.0 Consensus size: 125
20667281 TTTTACCAAA
* * *
20667291 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
*
20667356 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
65 CGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
20667417 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
20667482 GACTTTGAAAAATAAATTCCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
66 GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
20667542 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
20667607 GACTTTGGAAAATAAATTGCTCCTCTAAACGGAGGCACCACGACTTTTGGAAAGTAAATT
66 GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
20667667 GCTCCT
1 GCTCCT
20667673 TGACAATCAT
Statistics
Matches: 248, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
125 215 0.87
126 33 0.13
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (125 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
Found at i:20672925 original size:59 final size:58
Alignment explanation
Indices: 20672833--20673126 Score: 423
Period size: 58 Copynumber: 5.0 Consensus size: 58
20672823 TCTTGTGTAG
20672833 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
20672892 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTAG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTGAAAATTTATTTTTAA
* **
20672950 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
***
20673010 GG-AAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
20673067 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTT-ATTTTTA
20673127 TTTAAAGAAA
Statistics
Matches: 211, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
57 9 0.04
58 99 0.47
59 81 0.38
60 15 0.07
61 7 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:20673041 original size:117 final size:117
Alignment explanation
Indices: 20672833--20673123 Score: 437
Period size: 117 Copynumber: 2.5 Consensus size: 117
20672823 TCTTGTGTAG
**
20672833 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
* *
20672897 ATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTAGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGA-AAATTTATTTTTAA
*
20672950 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGG-AA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAA
*
20673014 ATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTTTAA
*
20673067 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
20673124 TTATTTAAAG
Statistics
Matches: 161, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
116 3 0.02
117 130 0.81
118 28 0.17
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAA
TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
Found at i:20673153 original size:14 final size:14
Alignment explanation
Indices: 20673134--20673191 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20673124 TTATTTAAAG
*
20673134 AAAATAGAATAATA
1 AAAATAGAAAAATA
20673148 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
20673162 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
20673177 AAAAT--AAAAATA
1 AAAATAGAAAAATA
20673189 AAA
1 AAA
20673192 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20673161 original size:17 final size:17
Alignment explanation
Indices: 20673141--20673191 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
20673131 AAGAAAATAG
20673141 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
20673158 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
20673176 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
20673192 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:20673200 original size:17 final size:16
Alignment explanation
Indices: 20673178--20673217 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20673168 AGTAAAACAA
*
20673178 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
20673194 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
20673211 AAATAAA
1 AAATAAA
20673218 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:20674238 original size:3 final size:3
Alignment explanation
Indices: 20674232--20674279 Score: 51
Period size: 3 Copynumber: 14.7 Consensus size: 3
20674222 TTACAAGAAA
*
20674232 AAT AAT AAT AAT AAAT AAT AAT AAT AAAT AAAT TAT AAT ATAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AAT -AAT -AAT AAT AAT A-AT AAT AA
20674280 ATATAGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
3 27 0.68
4 13 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:20674247 original size:13 final size:13
Alignment explanation
Indices: 20674231--20674279 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
20674221 ATTACAAGAA
20674231 AAATAATAATAAT
1 AAATAATAATAAT
20674244 AAATAATAATAAT
1 AAATAATAATAAT
*
20674257 AAATAAATTATAAT
1 AAAT-AATAATAAT
*
20674271 ATATAATAA
1 AAATAATAA
20674280 ATATAGAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
13 21 0.66
14 11 0.34
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:20674261 original size:4 final size:4
Alignment explanation
Indices: 20674241--20674383 Score: 52
Period size: 4 Copynumber: 35.5 Consensus size: 4
20674231 AAATAATAAT
* * *
20674241 AATA AAT- AAT- AAT- AATA AATA AAT- TATA ATATA TAATA AATA TAGA
1 AATA AATA AATA AATA AATA AATA AATA AATA A-ATA -AATA AATA AATA
* * *
20674287 ACTA TATA AATAA AATA CATATA AATA TTAACA GAA-A AA-A AATA AATA
1 AATA AATA AAT-A AATA -A-ATA AATA --AATA -AATA AATA AATA AATA
* * *
20674335 AATA AGTA AA-A ATATA AATA TAAT- AAT- AATA AATA AAAA AATA CATA
1 AATA AATA AATA A-ATA AATA -AATA AATA AATA AATA AATA AATA AATA
20674382 AA
1 AA
20674384 ATACAAAAGA
Statistics
Matches: 107, Mismatches: 18, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
3 24 0.22
4 57 0.53
5 19 0.18
6 7 0.07
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:20674372 original size:27 final size:27
Alignment explanation
Indices: 20674239--20674373 Score: 78
Period size: 27 Copynumber: 4.7 Consensus size: 27
20674229 AAAAATAATA
*
20674239 ATAATAAATAAT-AATAATAAATA-AATT
1 ATAAT-AATAATAAATAA-AAATATAAAT
20674266 ATAATATATAATAAATATAGAACTATATAAAT
1 ATAATA-ATAATAAATA-A-AA--ATATAAAT
* ** * * *
20674298 AAAATACAT-ATAAATATTAACAGAAAA
1 ATAATA-ATAATAAATAAAAATATAAAT
* *
20674325 AAAATAAATAAATAAGTAAAAATATAAAT
1 ATAAT-AAT-AATAAATAAAAATATAAAT
20674354 ATAATAATAATAAATAAAAA
1 ATAATAATAATAAATAAAAA
20674374 AATACATAAA
Statistics
Matches: 82, Mismatches: 17, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
26 1 0.01
27 33 0.40
28 8 0.10
29 20 0.24
31 10 0.12
32 10 0.12
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (27 bp):
ATAATAATAATAAATAAAAATATAAAT
Found at i:20674377 original size:12 final size:12
Alignment explanation
Indices: 20674321--20674384 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
20674311 ATATTAACAG
20674321 AAAAA-AAATAA
1 AAAAATAAATAA
* *
20674332 ATAAATAAGTAA
1 AAAAATAAATAA
*
20674344 AAATATAAATATA
1 AAAAATAAATA-A
20674357 ATAATAATAAATAA
1 A-AA-AATAAATAA
*
20674371 AAAAATACATAA
1 AAAAATAAATAA
20674383 AA
1 AA
20674385 TACAAAAGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
11 4 0.10
12 23 0.55
13 4 0.10
14 4 0.10
15 7 0.17
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (12 bp):
AAAAATAAATAA
Found at i:20674386 original size:21 final size:21
Alignment explanation
Indices: 20674232--20674386 Score: 58
Period size: 21 Copynumber: 7.3 Consensus size: 21
20674222 TTACAAGAAA
*
20674232 AATAAT-AAT-AATAAATAAT
1 AATAATAAATAAAAAAATAAT
**
20674251 AATAATAAAT-AAATTATAAT
1 AATAATAAATAAAAAAATAAT
* * *
20674271 ATATAATAAATATAGAACT-AT
1 A-ATAATAAATAAAAAAATAAT
* *
20674292 -ATAAATAAAATACATATAAATATT
1 AAT-AAT-AAATA-A-AAAAATAAT
*
20674316 AACAGA-AAA-AAAATAAATAAAT
1 AATA-ATAAATAAAA-AAAT-AAT
* *
20674338 AAGTAA-AAATATAAATATAAT
1 AA-TAATAAATAAAAAAATAAT
20674359 AATAATAAATAAAAAAATACAT
1 AATAATAAATAAAAAAATA-AT
20674381 AA-AATA
1 AATAATA
20674387 CAAAAGAAAA
Statistics
Matches: 100, Mismatches: 20, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
19 8 0.08
20 18 0.18
21 41 0.41
22 18 0.18
23 11 0.11
24 2 0.02
25 2 0.02
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAAATAAAAAAATAAT
Found at i:20676136 original size:26 final size:26
Alignment explanation
Indices: 20676100--20676152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20676090 GTTGACTTAG
20676100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20676126 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20676152 G
1 G
20676153 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20679265 original size:26 final size:26
Alignment explanation
Indices: 20679236--20679288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20679226 GCTGACTTAG
* *
20679236 GCATACGGAGTTTATTCGCT-GTCTAA
1 GCATACGCAGTTCATTC-CTAGTCTAA
20679262 GCATACGCAGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
20679288 G
1 G
20679289 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCTAGTCTAA
Found at i:20680163 original size:26 final size:26
Alignment explanation
Indices: 20680134--20680184 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20680124 GTTAACTTAG
*
20680134 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACAGAGTTCATTCCCAGTCTAT
20680160 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
20680185 AGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAT
Found at i:20681053 original size:26 final size:26
Alignment explanation
Indices: 20681023--20681075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20681013 GTTGACTTAG
20681023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20681049 GCATACGGAGTTCGTTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20681075 G
1 G
20681076 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20683775 original size:26 final size:26
Alignment explanation
Indices: 20683739--20683791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20683729 GTTGACATAG
*
20683739 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
20683765 GCATACAGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20683791 G
1 G
20683792 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20684167 original size:899 final size:899
Alignment explanation
Indices: 20678531--20684650 Score: 7762
Period size: 914 Copynumber: 6.8 Consensus size: 899
20678521 CCACCCTATC
* *
20678531 GTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT
1 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
20678596 ATCCCTCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACGGGTTTGCT
66 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
20678661 GCCAGTAGCTATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTAC
131 GCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
20678725 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTCATCTACCAA
195 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * ** *
20678790 GCTTGCGACAAAAAGT-CTTTTGAAAAAATTTTAAAAAATCCCGAAGCGCAAAAAGTTTCAAAAA
260 GTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
20678854 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTG
324 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
20678919 TATGAATTTACAAGCCATGAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTGAACCAAC
389 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
* *
20678984 CTACCACCCTATCGATCAACGGCTTGCGCATACCGTCTCTCTGGTA-GGCGTAGTGCCCGCCCG-
454 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-ACGGCGTAGTGCCCGCCCGC
* *
20679047 -C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGCCG-TCATTCCCAGTCTAAGATCG
518 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGAT-A
* * * * * * *
20679108 GACCGGACCGAGGGTTGCGGCAGTAGGATCCGCAGCACGTAGAGGGGGACCCAAGCTATCCCCAG
581 GACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA-GGGGACCCGATCGAT-CCCGG
* * * * *
20679173 CTTGTGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGC
644 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * ** *
20679238 ATACGGAGTTTATTCGCTGTCTAAGCATAC-GCAGTTCATTCCTAGTCTAAGATCAGACTGGACT
709 ATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACC
** * **
20679302 GAGGGTTACAGG-AGCACATTTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
773 GAGGGTTAC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGG
** * * * *
20679366 CACCATTGCCAGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGG
837 CACCATCACCGGAGCATCATCGGAGAACCAGACCGACGGCATTGGGGTTCCGGTGATCGGGGG
* * ** * *
20679429 GCCGGGGTGGGTGTGCACACAAAATGTGGGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCC
1 GTCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
20679494 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
65 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
20679559 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
130 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
20679624 ACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAA-GATCTCATCTACCAA
195 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * **
20679688 GTTTGTGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAA
260 GTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
20679753 TTGTGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTG
324 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
20679817 TATGAATTTAAAAGCCATAAAAATGGTATTGGCA--CATAGAAATATGAAGATGTACCTAAACCC
389 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCC
* * * *
20679880 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGG-CTGGCATAGTGCCCGCTC
452 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGAC-GGCGTAGTGCCCGCCC
*
20679944 G--C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
516 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T
* * * * * * * *
20680005 GGACCGGATTGAGGGTTGCGGTAGTAGGA-CTGGTAGCATGCAGAAGGGGACCCGACCGATCCCC
580 AGACCGGATCGAGGGTTGCGGCAGCAGGATC-GGCAGCACGTAG-AGGGGACCCGATCGAT-CCC
* * * * * * *
20680069 AGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTCCGTGTGTTAACTTAG
642 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
20680134 GCATACGGAGTTCATTCCCAGTCTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
707 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * *
20680199 TGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTACTGGTGATGCATTTTTCTTCATCGGGG
772 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGG
* * * * *
20680264 CACCAT--------CA-C--CGGAGAACCTGACCGACGGCATTGAGGTTTCAGTGATTAGGGGG
837 CACCATCACCGGAGCATCATCGGAGAACCAGACCGACGGCATTGGGGTTCCGGTGA-TCGGGGG
* * * *
20680317 G-CCGGGGGGTGTGCACACATGTTGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
20680381 ATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCT
66 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
20680446 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAAAATGGTCACAAAATCTTGTA
131 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC--AAATGGTCACAAAATCTTGTA
* *
20680510 CA-TTTGAGTTTTTAGCTG-A-TGTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCA
194 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * ** *
20680571 CAGTTGGGGCGAAAACTCTTTTCAAAAAATATTTTAAAAAATCCTGAACCATAAAAAAGTTT-GA
259 -AGTTTGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACC-GCAAAAAGTTTCAA
* * *
20680635 AAATCATGAAAAATA-AAAACGAGTCG-CTTGCCAT-AAACCTCACGTGAAGGCTTTAGGGACCA
321 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
20680697 TTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
386 -TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
* * * * * * * *
20680762 CCACATACCACCCTATCGATCAACAGCTTACGCATCCCATCTCTCTGGCCGCGCGTAGTCCCCAC
450 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACG-GCGTAGTGCCCGC
* *
20680827 CCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGA
514 CCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * **
20680892 TCGGACCCAATTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCC
579 T-AGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA-GGGGACCCGATCGATCCC
* * * * *
20680957 TGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGTCCGCACGTTCGTTTCATGGGTTGACTTA
642 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
20681022 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTTTAAGATCAAACCAGA
706 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * ** * * *
20681087 CCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTTCGAG
771 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGG
* * * *
20681152 TCACCATCACCGGAGCAT--TGCAGGAGAACCTGATCGGCGGCATTGGGGTT-C--TGA-C----
836 GCACCATCACCGGAGCATCAT-C-GGAGAACCAGACCGACGGCATTGGGGTTCCGGTGATCGGGG
20681207 G
899 G
* *
20681208 AT--GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
20681271 ATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
66 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* ** *
20681336 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAAAA
131 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * *
20681401 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGTAAAAATACAAGGATCATGTCTAGCAAG
196 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *** *
20681466 TTTGGGGCAAAAACTCCTTCCGAAAAAATTTTGGGAAATCCCGAACTGCAAAAAGTTTCAAAAAT
261 TTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* **
20681531 CGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAATTTTCACGTGAAGGCTTAAGGGACCATTGT
325 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
20681596 ATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCAC
390 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCCAC
* * **
20681660 CTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCAAAGCGTAGTGCCCGCCCACC
454 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCG----CC
* * * *
20681725 CGCCCACCCGCCCGCTCGCTTGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTA
515 CGCCCGCCTGCCCGCT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * **
20681790 AGAATAGACCGGATCGAGGGTTGCGCGGTAGCAGGATTGGCAGCTCGTAGAAGGGGACCCGATAT
576 AG-ATAGACCGGATCGAGGGTT--GCGGCAGCAGGATCGGCAGCACGTAG-AGGGGACCCGATCG
** * * * *
20681855 ATCCCTGATTTGCGCATCTCGCCCCTTTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
637 ATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * * * *
20681920 AATTACGCATACGAAGTTCATTTCTAGTCTAAGCATACAGAGTTCATTCCCAATCTTAGATCGGA
701 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * *
20681985 CCAGGCCGAGGGTTACGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCG
766 CCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCG
* * *
20682050 TCGGGGCACCATCACCGGAGCATCACCGGAGAACCTA-ACCGGCGGCATTGGGGTTCCGGCGATC
831 TCGGGGCACCATCACCGGAGCATCATCGGAGAACC-AGACCGACGGCATTGGGGTTCCGGTGATC
20682114 GGGGGG
895 -GGGGG
*
20682120 GTCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
20682185 ATCCCTCAGTC-GACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
66 ATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* ** *
20682249 TGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAAA
130 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
20682314 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGTAAAAATACAAGGATCATGTCTAGCAA
195 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *** *
20682379 GTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTGGGAAATCCCGAACTGCAAAAAGTTTCAAAAA
260 GTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* **
20682444 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAATTTTCACGTGAAGGCTTAAGGGACCATTG
324 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
20682509 TATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCGTAAACCCA
389 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCCA
* * **
20682573 CCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCAAAGCGTAGTGCCCGCCCAC
453 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCG----C
* * * *
20682638 CCGCCCACCCGCCCGCTCGCTTGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCT
514 CCGCCCGCCTGCCCGCT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * **
20682703 AAGAATAGACCGGATCGAGGGTTGCGGTAGCAAGATTGGAAGCTCGTAGAAGGGGACACGATATA
575 AAG-ATAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG-AGGGGACCCGATCGA
** ** * * * *
20682768 TCCCTGATTTGCGCATCTTGCCCCTTTGGTCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGA
638 TCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * * * * *
20682833 ATTATGCATACGAAGTTCATTTCTAGTCTAAGCATACAGAGTTCATTCCCAATCTTAGATCGGAC
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
20682898 CAGGCCGAGGGTTACGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGT
767 CAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGT
* * *
20682963 CGGGGCACCATCACCGGAGCATCACCGGAGAACCTA-ACCGGCGGCATTGGGGTTCCGGCGATCG
832 CGGGGCACCATCACCGGAGCATCATCGGAGAACC-AGACCGACGGCATTGGGGTTCCGGTGATC-
20683027 GGGGG
895 GGGGG
*
20683032 GTCGGGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1 GTC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
20683097 CTATCCCTCAGTC-GACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
64 CTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
20683161 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
128 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
20683226 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATGCAAGGATCACGTATACC
193 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
20683291 AAGTTTGGGCCAAAACTGCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
258 AAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
20683356 ATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
323 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
20683421 GTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
388 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* * * * *
20683486 CCTACCACCCAATTGATCCACGGCTTGCGCATCCCGCCTCCCTGGTCGGCGTAGTGCCCGCCCGC
453 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGC
** *
20683551 CCGCCTGCCCGCTCGTTT-GTCGGTCAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA
518 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGA
* * * * * * *
20683615 CCAGACCAAGGGTTGC-GCAGCAAGATCAGCAGCACGTAGAGGGGACCCGGTCGATCCTCGGCAT
583 CCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGACCCGATCGATCC-CGGCTT
* * *
20683679 ACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATA
647 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
** ** * *
20683744 TAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTTAGTCTAAGATCAAACCAGACCAAGG
712 CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * *
20683809 GTTACGGCAGCACATGCCGGGCTCGGGCAAGTGCTGGTG-TCGCATTTTTCTTCGCCAGGGCACC
777 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGAT-GCATTTTTCTTCGTCGGGGCACC
** * *
20683873 ATCGTCGGAGCATCATCGGAGAACCAGACCGATGGCATTGGGGTTTCGGTGATCAGGGGG
841 ATCACCGGAGCATCATCGGAGAACCAGACCGACGGCATTGGGGTTCCGGTGATC-GGGGG
* *
20683933 GTCGGGGAGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
20683998 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
66 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
20684063 GCCAGTAGCCAGTAAAGTGTTTGAATTGGGGACACTTTTTTCAAATGCTCACAGAATCTTGTACA
131 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
20684128 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AAGGGATCAGGTCTGCCAA
196 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAA
* * * *
20684192 CTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACGGCAAAAAGTTT-GAAAA
260 GTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
20684256 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTT-ATGTGAAGGCTTAAGGGACCATTG
324 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
20684320 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAACATGTGCCTAAACCCAC
389 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
** * * *
20684385 CTACCACTTTACCGATCCATC-GCTTG-GACATCCCGTCTCTCTGGCCGACGTAGT----GCCCG
454 CTACCACCCTATCGATCCA-CGGCTTGCG-CATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCG
20684444 CCCG-CT---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG
517 CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG
** * * *
20684505 ---GG--C-A-GG-ACCGGTAGCAGGATCGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGC
582 ACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA-GGGGACCCGATCGAT-CCCGGC
* * * * **
20684562 TTACGTATCCCGGCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTAAGTTGACTTAGGCA
645 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
20684627 TACGGAGTTCATTCCTAGTCTAAG
710 TACGGAGTTCATTCCCAGTCTAAG
20684651 ATTGGATCGG
Statistics
Matches: 4678, Mismatches: 444, Indels: 213
0.88 0.08 0.04
Matches are distributed among these distances:
883 36 0.01
884 185 0.04
885 157 0.03
886 177 0.04
887 60 0.01
888 15 0.00
889 293 0.06
890 179 0.04
891 59 0.01
892 49 0.01
893 65 0.01
894 118 0.03
895 25 0.01
896 2 0.00
897 24 0.01
898 588 0.13
899 566 0.12
900 79 0.02
901 289 0.06
902 21 0.00
903 255 0.05
904 41 0.01
905 4 0.00
906 2 0.00
907 2 0.00
909 16 0.00
912 306 0.07
913 221 0.05
914 842 0.18
915 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCCG
CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACCG
GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGACCCGATCGATCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGGCACCATCAC
CGGAGCATCATCGGAGAACCAGACCGACGGCATTGGGGTTCCGGTGATCGGGGG
Found at i:20684817 original size:26 final size:26
Alignment explanation
Indices: 20684781--20684833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20684771 GGTTGACTAG
*
20684781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
20684807 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
20684833 G
1 G
20684834 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:20684848 original size:158 final size:154
Alignment explanation
Indices: 20684442--20684817 Score: 448
Period size: 150 Copynumber: 2.4 Consensus size: 154
20684432 ACGTAGTGCC
* * *
20684442 CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATA-GG
1 CGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGG
* * * * * *
20684506 -G-CAGGACC-GGT-AGCAGGATCGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTACG
66 AGTCAGGACCAGTTAAGCAGGATCGACAGAACGCAGAGGGGGACCCAATCGATCCCCAGCTTACG
* *
20684567 TATCCCGGCCCTCTGGCCGGCTGAG
131 CATCCC-GCCCTCTGGCCGACTGAG
* * *
20684592 CACCCGCACGCTCGTTTCGTAAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-TGG
1 CGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGG
20684656 A-TC-GGACCGAGGGTTACGGCAGCAGGATCGACAGAACGCAGAGGGGGACCCAATCGATCCCCA
66 AGTCAGGACC-A--GTTA----AGCAGGATCGACAGAACGCAGAGGGGGACCCAATCGATCCCCA
* *
20684719 GCTTGCGCATTCCC-CCCTCTGGCTGACTGAG
124 GCTTACGCA-TCCCGCCCTCTGGCCGACTGAG
20684750 CGCCCGCACGCTCGTTTCGTAGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATATG
20684814 GAGT
65 GAGT
20684818 TCATTACCAG
Statistics
Matches: 191, Mismatches: 19, Indels: 22
0.82 0.08 0.09
Matches are distributed among these distances:
150 62 0.32
151 1 0.01
154 2 0.01
157 29 0.15
158 43 0.23
159 49 0.26
160 5 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (154 bp):
CGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGG
AGTCAGGACCAGTTAAGCAGGATCGACAGAACGCAGAGGGGGACCCAATCGATCCCCAGCTTACG
CATCCCGCCCTCTGGCCGACTGAG
Found at i:20685445 original size:26 final size:26
Alignment explanation
Indices: 20685409--20685460 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20685399 GTTGACTTAG
* *
20685409 GCATACGGAGTTCATTCTCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20685435 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20685461 TATTGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20687775 original size:26 final size:26
Alignment explanation
Indices: 20687745--20687797 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20687735 GTTGACTTAG
20687745 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATATCG-AGTTCATTCCCAGTCTAA
20687771 GCATATCGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATTCCCAGTCTAA
20687797 G
1 G
20687798 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATCGAGTTCATTCCCAGTCTAA
Found at i:20689557 original size:26 final size:26
Alignment explanation
Indices: 20689523--20689575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20689513 GTTGACTTAG
*
20689523 GCATACGGAATTCATTCCCTGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
20689549 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
20689575 G
1 G
20689576 ATCTGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:20690439 original size:26 final size:26
Alignment explanation
Indices: 20690402--20690453 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20690392 TGACTTAGGC
20690402 ATACGGAATTCATTCCCAGTCTAAGA
1 ATACGGAATTCATTCCCAGTCTAAGA
*
20690428 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAATTCATTCCCAGTCTAAGA
20690454 TCGGATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAAGA
Found at i:20691171 original size:889 final size:891
Alignment explanation
Indices: 20687656--20695276 Score: 9370
Period size: 889 Copynumber: 8.5 Consensus size: 891
20687646 CAGCAACACA
* * ** * * *
20687656 CAGAGGGGGACCCAACTGATCCCCGGCTTGCGCATCCCGATCTTCTGGTC-AGCTGAGCGCCCGT
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGC
* *
20687720 ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATC-GAGTTC
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTC
* * *
20687784 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGC
129 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGC
** * * * *
20687849 TGGTGTTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGT-CGGAGAACTTGACCGGCA
193 TGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATC-TCCGGAGAACCTGACCGACA
** * *
20687913 GCATTAAGGTTCCGACGATCGGGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
257 GCATTGGGGTTCCG-CGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** *
20687978 GTACTTGGGTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAG
319 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * * *
20688043 AGCATCTGAGATTTTACAGGTTTGCTACCAGCAGCCTTTAAAGTGTTTGAAATGGGAACACTTTT
384 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
20688108 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGGGCATGCCAAAA
449 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC-AAA
* *
20688173 AAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACA-CCTTTCGAAAAAATTTTAAAAA
513 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAA
* * ** * *
20688237 ATCTCAAACGGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
577 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
20688302 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGTAGTGGCACGCA
642 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
20688367 GAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCTCGTCT
707 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * ** ** *
20688432 CTCTGGCCGTAGTAGTGCCCGCTCGCCTACCCGCCTGCTTATTTCGTCGGTTGGCTTAGGCACA-
772 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * **
20688496 TG-G-TGA----GGGT-T--G--CA-A-CA-AC--A----G-GATCGGTAGCACG
837 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGTTGTGATCGGTAGCACG
* * * ** * * *
20688530 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGTTGGCTGAGCACCTGCA
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* **
20688595 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACGCGGAGTTCAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
20688660 TCCCAGTCTAAGATCGGA-CTGTACTGAGGGTTACGACAGCACATGCTGGGCCCGGGCATGTGCT
131 TCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCT
* * * * ** * *
20688724 GGTGCCACATTTTTCTTCGTTGAGGCACCATTGTCGGAGCATCGCAGGAGAACCTGACCGAC-GA
194 GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAG-
* * *
20688788 CATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
258 CATTGGGGTTCCG-CGATC-GGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
20688853 TACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAGGA
320 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
20688918 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
385 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
20688983 TCAAATGGTCACAAAATCTTGTACACTTCAAGTGTTTAGCTGAATTTTTTTGTGCATGCCAAGAA
450 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAA
* ** * *
20689048 AAATTCAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATG
515 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-
* * * * *
20689113 CT-GAACCATAAAAAGTTTCAAAAATCATGAAAACTAGAAAATGAGTCATCTTGCCATGAAACTT
579 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
20689177 CATGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATGAAAATAGCATTGGCACATAGA
644 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * *
20689242 AATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCT
709 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * ** * *
20689307 CTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTTATTTCGTCAGTTGGCTTAGGCATATGG
774 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
20689372 AGTTCACTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGCAGGATCGGCAGCATG
839 AGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGTT---GT-----GATCGGTAGCACG
* * * * **
20689434 TAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCA
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * *
20689499 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCTGTCTAAGCATGCGGAGTTCAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
20689564 TCCCAGTCTAAGATCTGACCAGACTGAGGGTTACGACAACACATGCTGGGCCCGGGCATGTGCTG
131 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
20689629 GTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAG-AAC-CC--TG-ACC-GA-CG--A-CA
195 GTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAGCA
* ** *
20689684 TTAGGGTTCCGGCGATCGGGGGGCTAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
260 TTGGGGTTCC-GCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
20689749 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAAGAACAT
324 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
20689814 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
389 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
20689879 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCC-AAAAAAAT
454 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAT
* ** *
20689943 TCAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTC-
519 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTCG
*
20690007 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
583 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
20690072 TGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATTGCATTGGCA-AGCAGAAAT
648 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAAT
* * ***
20690136 ATGAAGATCTACCTAAACCCATGAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-G
712 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
20690200 GTCGGTGTAGTGCCCGCTCGCCCGCCTGTCC-GCTCGTTTCGTCAGTTGGATTAGGCATACGAAG
777 GCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
20690264 TTTATTCCCAGACTAAGATCAGACCAG-CTAAGGTT-T-AT-GGTAGCAAG
841 TTCATTCCCAGTCTAAGATCAGACCAGACTAAGGTTGTGATCGGTAGCACG
* * * *
20690311 CAGAGGGGGACCCGACC-AGTCCTCGGCTTACACATCCCGCCCCTCTGGTCGACTGAGCGCCCGC
1 CAGAGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * *
20690375 CCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGAATACGGAGTTCA
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
20690440 TTCCCAGTCTAAGATCGGATCAGATCAAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCT
130 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCT
* * * **
20690505 GGTGCCACATTTTTCTTCATCGAGACACCATCATCGGAGCATCTCCGGAGAACCTGACCGATGGC
194 GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAGC
* *
20690570 ATTGGGGTTCCAGCGATCGGGGGTGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTA
259 ATTGGGGTTCC-GCGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
20690635 CTTGGCCCTTATATTGGCCCCCTATCCCCCATCCAACCTCGAGAACTCACACCCCCTTAAGGAGC
322 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
20690700 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTC
387 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * ** *
20690765 AAATGGTCACAAAATGTTGTACAGTTTGAGTTTTTAGCTAAACGTTTTTGTGCATGCCAACAAAA
452 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAA
* *
20690830 ATACAAGGATGACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
517 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
* * *
20690895 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCAG
582 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
20690960 GTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGTCATTGGCACACAGAAAT
647 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* *
20691025 ATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
712 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
20691090 GCCGGCGTAGTGCCCGCCCACCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
777 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
20691155 TCATT-CCAGTCTAAGATCAGACCCGACCAAGGGTTGTGACAGCAGGATCGACAGCACG
842 TCATTCCCAGTCTAAGATCAGACCAGACTAA-GGTTGTG--ATC-GG-T----AGCACG
* * * * *
20691213 CAGAGGGGTACCCGACTGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* *
20691278 CGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
20691343 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCAGGCATGTGTTG
131 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTG
** *
20691408 GTGCCGTC-TTTTTCTTCGCCGGGGCA-C--CATC---G-----CCAGAGAACCTGACCGACAGC
195 GTGCCG-CATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAGC
* * *
20691461 ATTGGGGTTCCAGTGATCGAGGGGG-CGGGGGGTGTGCGGACATGATGTGCGATAGGTGCTGGTA
259 ATTGGGGTTCC-GCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
20691525 CTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGC
322 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
20691589 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
387 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
20691654 AAATGCTCACAAAATCTTGTACACTTCGTGTTTTTAGCTAATTTTTTTTGTGCATACCAAAAAAA
452 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAA
* * *
20691719 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
517 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
* ** * *
20691784 GAACC-TCAAAAATTTTTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
582 GAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
20691848 TC-TGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
646 -CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * *
20691912 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGTTTACGCATCCCGTCTCTC
710 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * **
20691977 TGGCAGACGTAGT----GCCCGCCCG--C-CC-GCTCGTTTTGTCGGTTTATCTTAGGCATACGG
775 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGG-TTGGCTTAGGCATACGG
* * *
20692034 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAAGATCGATAGCACG
839 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CTAAGGTTGT--------GATCGGTAGCACG
* ** * * * * * *
20692096 CGGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCTAC-GAAGCGGCCGA
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG-AGCGCCCGC
* * * *
20692160 ACGCTCGTTTTGTGGGTTGACTTAGGGATACGGATTTCATTCCCAGTCTAAGCATACAGAGTTCA
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
20692225 TTCCCAGTCTAAGGTCGGATCAAACCGAGGGTTGCGACAGTACATGCTCGGCTCGGGTATGTGCT
130 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * * * *
20692290 GGTGCTGCATTTTTCTTCCCCGGGGCACCATGATCGAAGCATCGT-CGAAAAACCTGACCGGCAG
194 GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATC-TCCGGAGAACCTGACCGACAG
* **
20692354 TATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCAG
258 CATTGGGGTTCCG-CGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
20692419 CACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAGGA
320 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
20692484 GCATTTGAGATTTTACATGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
385 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * *
20692549 TCAAATGGTGACAAAATCTCGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATACGAACAA
450 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAA
* * ** *
20692614 AAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATGATTCCAAAAAAATTTTAAAAAATC
515 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * *
20692679 TCGAACTGCAAAAAGTTTTC-AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
580 TCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
20692743 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
644 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * *
20692808 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCATGCGCATCCCATCTCT
709 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
20692873 CTAGTCGGCGTAGTGCTCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
774 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * ** *
20692938 AGTTCATTCCTAATCTAAGATCAGACTAGATTGAGGGTTACTGTAGCAGAATTAGTAGCATG
839 AGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGG-T--TGT----G-ATCGGTAGCACG
* * * * *** * * *
20693000 TAGAAGGGGACCCGGCCAATTTTCGGCTTGCGCAGCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * *
20693065 CGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTTCCATTCTAAGCATACGGAGTTCAT
66 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
20693130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG-TCCGAGCATGTGCT
131 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCT-CGGGCATGTGCT
* * *** * *
20693194 GGTGCGGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGT-CAGAGAACCTGACCGACGG
194 GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATC-TCCGGAGAACCTGACCGACAG
*
20693258 CATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
258 CATTGGGGTTCC-GCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
20693323 ACATGGCACTTATATTGGCCCCTTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAG
321 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
20693388 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTT
386 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * ** *
20693453 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTTAACTTTTTTGTACACACCAAGAAA
451 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAA
* * * * *
20693518 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCC
516 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCT
* * * * *
20693583 CAAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTTGTCTTGCCATGAAACTTCA
581 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
20693647 CGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCA-AGCAAAA
646 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAA
* * * *
20693711 ATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGGTTGGGCATCCCGTCTCTC
710 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
20693776 TGGCCGACGTAGTGGCCGCCCGCCCGCCCGCCTGCCCGCTCATTTCGTTGGTTGGCTTAGGCATA
775 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCT----GCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * *
20693841 CGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGTAGCAGGATCGATAGCACG
836 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTAAGG-T-T-GT-----GATCGGTAGCACG
* ** * ** *
20693906 CAGAGGGGGACCCGGCCGATCCCTATG-TTGCGCATCTCGCCTGTCTGGCCGACTAAGCGCCCGC
1 CAGAGGGGGACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * *
20693970 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCA
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
20694035 TTCCCAGTCTAAGATCGGACC-GTACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCTTGTGC
130 TTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
20694099 TGGTGCCGCATTTTTCTTCA-CTGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGG
193 TGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAG
* * * *
20694163 CATTGGGGTT-CGGGCAGTCAAGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGC
258 CATTGGGGTTCCGCG-A-TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
20694227 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGA
320 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
20694292 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTT
385 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
20694357 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTATAGCTGAATTTTTTTGTGCATGCCAAAAA
450 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAA
* *
20694422 AAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTTCGAAAAAATTTTAAAAAATC
515 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* ** **
20694487 CCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
580 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
20694552 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATAGCATTGGTAAATAGAA
645 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * *
20694617 ATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCAC
710 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** ** * * * *
20694682 TGGTAGGCGTAGTGCCCGCCCGCCCGCCCATCTGCTTGTTTTGTCGGTTAGCTTAGGCATAGGGA
775 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * **
20694747 GTTCATTCCCAGTCT-AGATCAGATCGGATTGAGGGTTGTGCCAGCAAGATCGACAGCACG
840 GTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGTTGT--------GATCGGTAGCACG
** * * *
20694807 CAGAGGCAGACCCGACCGATCCCCGGCTTGTGCGTCCTGCCCCTCTGGCC-AGCTGAGCGCCCGC
1 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGC
*
20694871 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
65 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
20694936 TTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATACTGGGCTCGAGCATGTGCT
130 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * ** * * *
20695001 GTTG-TGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGATAGC
194 GGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAGC
*
20695065 ATTGGCGTTCCGACGATCGGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
259 ATTGGGGTTCCG-CGATCGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
20695130 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
321 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
20695195 CATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
386 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
20695260 CAAATGGTCACAAAATC
451 CAAATGGTCACAAAATC
20695277 GATCCATAGC
Statistics
Matches: 5883, Mismatches: 700, Indels: 300
0.85 0.10 0.04
Matches are distributed among these distances:
873 293 0.05
874 446 0.08
875 2 0.00
876 3 0.00
877 209 0.04
878 5 0.00
879 2 0.00
880 2 0.00
881 16 0.00
882 30 0.01
883 221 0.04
884 6 0.00
885 10 0.00
886 4 0.00
887 25 0.00
888 223 0.04
889 667 0.11
890 190 0.03
891 282 0.05
892 222 0.04
893 8 0.00
894 54 0.01
895 3 0.00
896 52 0.01
897 404 0.07
898 9 0.00
899 8 0.00
900 22 0.00
901 259 0.04
902 612 0.10
903 279 0.05
904 512 0.09
905 357 0.06
906 439 0.07
907 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCTCCGGAGAACCTGACCGACAGCAT
TGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTAAGGTTGTGATCGGTAGCACG
Found at i:20691338 original size:26 final size:26
Alignment explanation
Indices: 20691302--20691354 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20691292 TTTGACTTAG
20691302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20691328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20691354 G
1 G
20691355 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20693125 original size:26 final size:26
Alignment explanation
Indices: 20693089--20693141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693079 GTTGACTTAT
* *
20693089 GCATACGGAGTTCATTTCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20693115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20693141 G
1 G
20693142 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20694932 original size:26 final size:26
Alignment explanation
Indices: 20694896--20694948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20694886 GTTGACTTAG
20694896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20694922 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20694948 G
1 G
20694949 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20695543 original size:26 final size:26
Alignment explanation
Indices: 20695512--20695564 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20695502 GTTGACTTAG
*
20695512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
20695538 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
20695564 G
1 G
20695565 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:20697325 original size:26 final size:26
Alignment explanation
Indices: 20697289--20697339 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20697279 GTTGACTTAG
20697289 GCATACGGAGTTCATTCCCAGTCTAC
1 GCATACGGAGTTCATTCCCAGTCTAC
*
20697315 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20697340 AGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAC
Found at i:20698215 original size:26 final size:26
Alignment explanation
Indices: 20698179--20698231 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20698169 GTTCACTTAG
20698179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20698205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20698231 G
1 G
20698232 ATCAGACGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20698231 original size:890 final size:887
Alignment explanation
Indices: 20695274--20698659 Score: 4290
Period size: 893 Copynumber: 3.8 Consensus size: 887
20695264 TGGTCACAAA
** * * * * *
20695274 ATCGATCCATAGCTTGCACATCCCGTCTCTTTGGCCGGCGTAGTGCCCACCCAC-CCGCTCGTTT
1 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCC-CTCCGCTCGTTT
* * * * ** **
20695338 TGTCGGTTGCCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGT
65 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGGACTAAGGGTTAC
* * * * * * * *
20695402 GGCACCAGGATCAGCAGTGCAC--AGTGGGAGACCC-GATCGATCCTTGGCTTGCGCATCCCGCC
129 AGCAGCAAGATCGGCA--GCACGTAGAGGGGGACCCAG-CCGATCCCTGGCTTGCGCATCCCGCC
* ** *
20695464 CCTCTGGCCGGCTGTGCGCCCATACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
191 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * ** *
20695529 CCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGATTGAGGGTTGCGGCAGCA
256 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GACCGAGGGTTGCGACAGCA
* * **
20695594 CATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCAT
320 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCACCGGGGCACCATCGTCGGAGCAT
* * *
20695659 CATCGGAGAACCTGACCGACGGCA------TT--GA-G-GGGGGGCCGGGGGTGGTGTACGCACA
385 CACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGAGGGGGGCC-GGGG-GGTGTGCGCACA
* * * *
20695714 TGAGGTGTGATGCGTGCTGGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAG
448 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAG
* * *
20695779 AACTCACACACCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGT
513 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
20695844 CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTG-AA
578 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAA
* * * * *
20695908 TCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTAGCAAGTTTGGGGACAAAACTCCTA
643 T-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
20695973 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
707 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTT-AAAATC-TGAAAAATAGAAAA-GA
* * * * * *
20696038 GTCATCTTGCCATAAAACTTCACGTCAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATCA
768 GTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
20696103 AAATGGCATTGGCA--CATACAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
833 AAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ** * *
20696158 ATCGATCCACGGCTTGTGCAACCCGCCTCTCTGGCCGGTGTAGTGGTCGCCCGTCTGCTCGTTTC
1 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCCTCCGCTCGTTTC
* * * * *
20696223 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTA-GACCAAGGGTTGCA
66 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC-AGGACTAAGGGTTACA
* * ** * * * * *
20696287 ACAGCAAGATCGGTAGCACACAGAAGGGGACCCGGCTGATCCCCGACTTGCGCATCCCGCCCCTC
130 GCAGCAAGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTC
* *
20696352 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAG
195 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
20696417 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGTACCAGATCCGAGGGTTAC-AGTAGCACA
260 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GA-CCGAGGGTTGCGA-CAGCACA
* * **
20696481 CGCTGGGCTCGGGCATGTGCTGGTGTCGCA-ATTTGCTTCGTCGGGGCACCATCGTCGGAGCATC
322 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTT-CTTCACCGGGGCACCATCGTCGGAGCATC
*
20696545 ACCGGAGAACCTGACCGGGCGGCATTGGGGTTCCGACGATCGGAGGGGTCGGGGCGGGGGGTGTG
386 ACCGGAGAACCTGACC-GGCGGCATTGGGGTT-C--CGAT--GA-GGG--GGGCCGGGGGGTGTG
* * * *
20696610 CACACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCC-TATCCCTTATCAAAC
442 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAC
* * *
20696674 CTCAAGAACTCACATCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTA
507 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
20696739 AAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAA
572 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * *
20696804 ATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCT---AAGTTTGGGGCCAAAAC
637 CTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
20696866 TCCTTCCGAAAAAATTTAAAAAAATCTCGAACAGTAAAAA-ATT----TC--AAAAAT-G----G
702 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAATCTGAAAAATAGAAAAG
20696919 -GTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
767 AGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
20696983 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
832 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
20697039 ATCAATCCACGGCTTGCGCATCTCGTCTCTATGGCCAGCGTAGTGCCCGCACTCCCGCCCTCCCG
1 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCG------C-CCCT----
* *
20697104 CCCGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCT-GTCTAAGATCGGACCGGA
55 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCGGACAGGA
* * * * * *
20697168 CTAAGCGTTACAGCAGTAGGATCGACAGCACGTAGAGGGGGACCCAGTCGATGCCTGGCTTGCGC
118 CTAAGGGTTACAGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCGC
* * *
20697233 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
183 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
20697298 GTTCATTCCCAGTCTACGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGTACCGAGGGTTG
248 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG-ACCGAGGGTTG
* ** * * * * **
20697363 TGACAGTGCATGCTAGGCTTGAGCATGTGCTGGTGCCACATATTTCTTCGTCGGGGCACCATCGT
312 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCACCGGGGCACCATCGT
* * * *
20697428 CGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCTGATGATTGGGGGCC-GGGGG-GT
377 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGA-GGGGGGCCGGGGGGTGT
* *
20697491 GCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAA
441 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAA
* * *
20697556 CCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATT
506 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
20697621 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTA
571 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* * *
20697686 GCTGAAATTTTTTGTGCAAGCCAAAAAAAATATAAGGATCACGTCTACCACGTTTGGGGCCAAAA
636 GCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
20697751 CTCCTT-CGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGA
701 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT--AAAATC-TGAAAAATAGA
20697815 AAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
763 AAA-GAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
20697880 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
827 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
20697941 ATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCCTCCGCTCATTTC
1 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCCTCCGCTCGTTTC
* * * * * *
20698006 GACGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACAGGATTGAGGGTTACGG
66 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGGACTAAGGGTTACAG
* * * * * *
20698071 CAGCAAGATCGGCAGCACGTAGAGGGGGAACCAGCCAATTCTTGGCTTGCACATCCGGCCCCTCT
131 CAGCAAGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCT
* *
20698136 GGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGT
196 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
20698201 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGACACCGAGGGTTGCGACAGCACATG
261 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG--ACCGAGGGTTGCGACAGCACATG
* * * *
20698265 CTGGGCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCTTCGCC
324 CTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCACCGGGGCACCATCGTCGGAGCATCACC
* *
20698330 GGAGAACCTGACTGGCAGCATTGGGGTTCCAGCGATCGA-GGGGGCCGGGGGGTGTGCGCACATG
389 GGAGAACCTGACCGGCGGCATTGGGGTT-C--CGAT-GAGGGGGGCCGGGGGGTGTGCGCACATG
*
20698394 ATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
450 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
* *
20698459 CTAACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC-TTCAAAGTGTC
515 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTC
* *
20698522 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
579 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAT
* * *
20698587 TTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
644 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
20698652 GAAAAAAT
709 GAAAAAAT
20698660 CTGAGTTTTT
Statistics
Matches: 2173, Mismatches: 251, Indels: 146
0.85 0.10 0.06
Matches are distributed among these distances:
881 148 0.07
882 52 0.02
883 181 0.08
884 252 0.12
885 112 0.05
886 33 0.02
887 2 0.00
888 12 0.01
889 5 0.00
890 315 0.14
891 18 0.01
892 94 0.04
893 394 0.18
894 92 0.04
895 10 0.00
896 4 0.00
897 2 0.00
898 51 0.02
900 1 0.00
901 170 0.08
902 217 0.10
903 4 0.00
904 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (887 bp):
ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCCTCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGGACTAAGGGTTACAG
CAGCAAGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGACCGAGGGTTGCGACAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGATGAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAATCTGAAAAATAGAAAAGAGTCGTCTTGCAAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
Found at i:20698685 original size:11 final size:11
Alignment explanation
Indices: 20698669--20698697 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
20698659 TCTGAGTTTT
20698669 TTCATCGAAAG
1 TTCATCGAAAG
20698680 TTCATCGAAAG
1 TTCATCGAAAG
20698691 TTCATCG
1 TTCATCG
20698698 GAAGGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (11 bp):
TTCATCGAAAG
Found at i:20699254 original size:9 final size:9
Alignment explanation
Indices: 20699240--20699269 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
20699230 ATATTACAAG
20699240 AAAAATAAT
1 AAAAATAAT
20699249 AAAAATAAT
1 AAAAATAAT
*
20699258 AATAATAAT
1 AAAAATAAT
20699267 AAA
1 AAA
20699270 TAAATTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATAAT
Found at i:20699286 original size:21 final size:20
Alignment explanation
Indices: 20699243--20699292 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
20699233 TTACAAGAAA
20699243 AATAAT-AA-AAATAATAAT
1 AATAATAAATAAATAATAAT
*
20699261 AATAATAAATAAATTATAAT
1 AATAATAAATAAATAATAAT
20699281 ATATAATAAATA
1 A-ATAATAAATA
20699293 TAGAACTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 6 0.21
19 2 0.07
20 10 0.36
21 10 0.36
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATAATAAATAAATAATAAT
Found at i:20699319 original size:17 final size:17
Alignment explanation
Indices: 20699259--20699376 Score: 61
Period size: 17 Copynumber: 6.8 Consensus size: 17
20699249 AAAAATAATA
20699259 ATAATA-ATAAATAAATT
1 ATAATATATAAATAAA-T
20699276 ATAATATAT-AATAAAT
1 ATAATATATAAATAAAT
20699292 ATAGAACTATATAAATAAA-
1 AT--AA-TATATAAATAAAT
*
20699311 ATACATATA-AATATTAAT
1 ATA-ATATATAA-ATAAAT
* *
20699329 AGAA-AAATAAATAAAT
1 ATAATATATAAATAAAT
*
20699345 A-AATAAGTAAAAATATACAT
1 ATAAT-A-TATAAATA-A-AT
20699365 ATAATA-ATAAAT
1 ATAATATATAAAT
20699377 CATAAAATCA
Statistics
Matches: 79, Mismatches: 7, Indels: 29
0.69 0.06 0.25
Matches are distributed among these distances:
15 2 0.03
16 13 0.16
17 25 0.32
18 18 0.23
19 8 0.10
20 10 0.13
21 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (17 bp):
ATAATATATAAATAAAT
Found at i:20699602 original size:1 final size:1
Alignment explanation
Indices: 20699592--20699647 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
20699582 ACATTGTCAA
* * * * * *
20699592 TTTTTGTTTTTTTTGTGTTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
20699648 ACCAAAGCTC
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:20699647 original size:7 final size:7
Alignment explanation
Indices: 20699600--20699646 Score: 71
Period size: 7 Copynumber: 6.9 Consensus size: 7
20699590 AATTTTTGTT
20699600 TTTTTTG
1 TTTTTTG
20699607 TGTTTTT-
1 T-TTTTTG
20699614 TTTTTTG
1 TTTTTTG
20699621 TTTTTTG
1 TTTTTTG
20699628 TTTTTTG
1 TTTTTTG
20699635 TTTTTT-
1 TTTTTTG
20699641 TTTTTT
1 TTTTTT
20699647 TACCAAAGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 11 0.29
7 22 0.58
8 5 0.13
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (7 bp):
TTTTTTG
Found at i:20699647 original size:14 final size:14
Alignment explanation
Indices: 20699592--20699647 Score: 85
Period size: 14 Copynumber: 3.9 Consensus size: 14
20699582 ACATTGTCAA
20699592 TTTTTGTTTTTTTTG
1 TTTTT-TTTTTTTTG
*
20699607 TGTTTTTTTTTTTG
1 TTTTTTTTTTTTTG
*
20699621 TTTTTTGTTTTTTG
1 TTTTTTTTTTTTTG
20699635 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
20699648 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 33 0.89
15 4 0.11
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:20699832 original size:42 final size:41
Alignment explanation
Indices: 20699654--20699866 Score: 300
Period size: 41 Copynumber: 5.1 Consensus size: 41
20699644 TTTTACCAAA
* * *
20699654 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATCAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
*
20699697 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
20699738 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* *
20699779 GCTCCTCTAAACAGAGGCACTACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
* * *
20699821 GCTCCTCTAAACACAGGCACCACGATTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGA-CTTTGGAAAATAAATT
20699863 GCTC
1 GCTC
20699867 TTTTACAATC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
41 72 0.46
42 58 0.37
43 28 0.18
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:20701149 original size:22 final size:21
Alignment explanation
Indices: 20701115--20701200 Score: 59
Period size: 22 Copynumber: 4.0 Consensus size: 21
20701105 TTGAATCTCT
20701115 TTTTTTTCATTTTCTCATTTC
1 TTTTTTTCATTTTCTCATTTC
* * *
20701136 TTTCATTTTC-TTTTTTCTTTGTT
1 TTT--TTTTCATTTTCTCATT-TC
* * *
20701159 TTTTTTTCTTTTTTTCATCATC
1 TTTTTTTCATTTTCTCAT-TTC
20701181 TTTTTTCTC-TTTTCTCATTT
1 TTTTTT-TCATTTTCTCATTT
20701201 TTCATCCATT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
21 9 0.18
22 31 0.61
23 11 0.22
ACGTcount: A:0.07, C:0.17, G:0.01, T:0.74
Consensus pattern (21 bp):
TTTTTTTCATTTTCTCATTTC
Found at i:20701152 original size:17 final size:17
Alignment explanation
Indices: 20701114--20701188 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
20701104 TTTGAATCTC
20701114 TTTTT-TTTCATTTTCT
1 TTTTTCTTTCATTTTCT
**
20701130 CATTTCTTTCATTTTCT
1 TTTTTCTTTCATTTTCT
** *
20701147 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTCATTTTCT
* **
20701164 TTCTTTTTTTCATCATCT
1 TT-TTTCTTTCATTTTCT
20701182 TTTTTCT
1 TTTTTCT
20701189 CTTTTCTCAT
Statistics
Matches: 43, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
16 3 0.07
17 29 0.67
18 11 0.26
ACGTcount: A:0.07, C:0.16, G:0.01, T:0.76
Consensus pattern (17 bp):
TTTTTCTTTCATTTTCT
Found at i:20705170 original size:59 final size:59
Alignment explanation
Indices: 20705078--20705314 Score: 347
Period size: 58 Copynumber: 4.0 Consensus size: 59
20705068 TCTTGTGTAG
20705078 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
20705137 GGAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTGATTTTTAA
* **
20705195 -GATAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGA-AAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
20705255 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
20705315 TTTAAAGAAA
Statistics
Matches: 162, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
57 4 0.02
58 53 0.33
59 44 0.27
60 46 0.28
61 15 0.09
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
Found at i:20705341 original size:14 final size:14
Alignment explanation
Indices: 20705322--20705379 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20705312 TTATTTAAAG
*
20705322 AAAATAGAATAATA
1 AAAATAGAAAAATA
20705336 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
20705350 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
20705365 AAAAT--AAAAATA
1 AAAATAGAAAAATA
20705377 AAA
1 AAA
20705380 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20705349 original size:17 final size:17
Alignment explanation
Indices: 20705329--20705379 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
20705319 AAGAAAATAG
20705329 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
20705346 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
20705364 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
20705380 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:20706462 original size:14 final size:14
Alignment explanation
Indices: 20706445--20706479 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
20706435 TTACAAGAAA
20706445 AATAATAAAAAAAT
1 AATAATAAAAAAAT
*
20706459 AATAATAAATAAAT
1 AATAATAAAAAAAT
*
20706473 TATAATA
1 AATAATA
20706480 TATAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAATAAAAAAAT
Found at i:20706471 original size:4 final size:4
Alignment explanation
Indices: 20706444--20706594 Score: 59
Period size: 4 Copynumber: 38.2 Consensus size: 4
20706434 ATTACAAGAA
* *
20706444 AAAT -AAT AAAA AAAT -AAT -AAT AAAT AAAT -TAT AATAT ATAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT AAAT
* * * * * * *
20706490 ATAG AACT ATAT AAAT AAAAT ACAT ATAA- ACAT TAAT AGAA- AAAT AAAT
1 AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT AAAT AAAT A-AAT AAAT AAAT
* * *
20706539 AAAT AAAT AAAT AAGT AAA- ATAT ACAT ATAAT -AAT AAAT -AAT AAAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT -AAAT
*
20706586 ACAT AAAT A
1 AAAT AAAT A
20706595 CAAAGAAAAG
Statistics
Matches: 107, Mismatches: 25, Indels: 30
0.66 0.15 0.19
Matches are distributed among these distances:
3 22 0.21
4 66 0.62
5 18 0.17
6 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:20706484 original size:14 final size:14
Alignment explanation
Indices: 20706445--20706594 Score: 76
Period size: 16 Copynumber: 10.1 Consensus size: 14
20706435 TTACAAGAAA
*
20706445 AATAATAAAAAAAT
1 AATAATAAATAAAT
20706459 AATAATAAATAAAT
1 AATAATAAATAAAT
*
20706473 TATAATATATAATAAAT
1 AAT-A-ATA-AATAAAT
* *
20706490 ATAGAACTATATAAAT
1 A-ATAA-TAAATAAAT
*
20706506 AA-AATACATATAAAC
1 AATAATA-A-ATAAAT
*
20706521 ATTAATAGAA-AAAT
1 AATAATA-AATAAAT
20706535 AAATAAATAAATAAAT
1 -AAT-AATAAATAAAT
20706551 AAGTAA-AATATACATAT
1 AA-TAATAA-ATA-A-AT
20706568 AATAATAAAT-AAT
1 AATAATAAATAAAT
*
20706581 AA-AATACATAAAT
1 AATAATAAATAAAT
20706594 A
1 A
20706595 CAAAGAAAAG
Statistics
Matches: 107, Mismatches: 12, Indels: 35
0.69 0.08 0.23
Matches are distributed among these distances:
12 6 0.06
13 10 0.09
14 23 0.21
15 20 0.19
16 31 0.29
17 16 0.15
18 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (14 bp):
AATAATAAATAAAT
Found at i:20706517 original size:17 final size:17
Alignment explanation
Indices: 20706445--20706578 Score: 72
Period size: 17 Copynumber: 7.9 Consensus size: 17
20706435 TTACAAGAAA
20706445 AATA-ATAAA-AAA-AT
1 AATATATAAATAAATAT
20706459 AATA-ATAAATAAATTAT
1 AATATATAAATAAA-TAT
20706476 AATATAT-AATAAATAT
1 AATATATAAATAAATAT
20706492 AGAACTATATAAATAAA-AT
1 --AA-TATATAAATAAATAT
* *
20706511 ACATATA-AACATTAATAG
1 A-ATATATAA-ATAAATAT
*
20706529 AA-AAATAAATAAATA-
1 AATATATAAATAAATAT
* *
20706544 AATAAATAAGTAAAATAT
1 AATATATAAAT-AAATAT
20706562 ACATATA-ATAATAAATA
1 A-ATATATA-AATAAATA
20706579 ATAAAATACA
Statistics
Matches: 96, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
14 9 0.09
15 5 0.05
16 20 0.21
17 29 0.30
18 14 0.15
19 13 0.14
20 6 0.06
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (17 bp):
AATATATAAATAAATAT
Found at i:20707483 original size:26 final size:26
Alignment explanation
Indices: 20707447--20707499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20707437 GTTGACTTAG
*
20707447 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20707473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20707499 G
1 G
20707500 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20708382 original size:26 final size:26
Alignment explanation
Indices: 20708346--20708398 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20708336 GTTGACTTAG
* *
20708346 GCATACAGAGTTGATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
20708372 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20708398 G
1 G
20708399 ATCGGACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20709139 original size:764 final size:770
Alignment explanation
Indices: 20707655--20709195 Score: 2435
Period size: 764 Copynumber: 2.0 Consensus size: 770
20707645 GGGGGTGTGC
*
20707655 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACC
*
20707720 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
*
20707785 AGTGTCTGGAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
131 AGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
20707850 GAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
196 GAATTGTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
20707915 CGTCCAAAAAATTTAAAAAATCCTGAACCGTGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
261 CGTCAAAAAAATTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
20707980 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAAGTTACAAGCCATA
326 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATA
20708045 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTA
391 AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTA
* *
20708110 CGGTTTGTGGATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCCGCTCATTTCGT
456 CGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCCGCTCATTTCGT
* * * *
20708175 CGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGCA
521 CGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGCTACGGCA
* * *
20708240 GCAGGATCGGTGGCACATAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
586 GCAGGATCGATGGCACACAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGG
* * * *
20708305 TCGGCTGAACAACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTTT
651 CCGGCTGAACAACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * **
20708370 AAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGTACCAAGGGTTGTGGCA
716 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCA
* * *
20708425 GCACATGATGTGTGATGGGTGCTGGTACTTGGCACTTATATTTGCCCCTTATCCCTCA-CAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACC
* **
20708489 TTGAGAACTCA-ACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTACTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
*
20708553 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-ACAAAATCTTGTACGCTTCGAG-TTTTAGC
131 AGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
20708616 TGAATTGTTTTG-GCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACT
195 TGAATTGTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
20708680 CCTTCAAAAAAATTTTAAAAA-CCCGAACCG-CAAACA-TTTCAAAAATCAT-AAAAATAGAAAA
260 CCGTCAAAAAAATTTAAAAAATCCCGAACCGTCAAA-AGTTTCAAAAATCATGAAAAATAG-AAA
20708741 ACGAGTCATCTTGCCATGAAAC-TCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCC
323 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCC
*
20708805 ATAAAAATGGCATTGGCCATGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCG
388 ATAAAAATGGCATTGG-CATGCAG-AAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
20708869 ATCTACGGCTTGTGCAT-CCGTCTCTCTGGCCG-CGTAGTGCCTGCCCGCCCGTCCGCCTGCTCG
451 ATCTACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCC-GCTCA
20708932 TTTCGTCGGTTAGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTAAGACCAAGGGC
515 TTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCAAGGGC
* ** * * *
20708996 TACGGTAGCAGGATCGATGGCAGCACAGAGGGGGACTCGGTCGATCCCTGACTTGCGCATTCTAC
579 TACGGCAGCAGGATCGATGGCA-CACAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCAC
* ** * * *
20709061 CCCTCTGGCCGGTTGAACGCCCGCATGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATT
643 CCCTCTGGCCGGCTGAACAACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
*
20709126 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCA
708 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCA
20709189 GCACATG
1 GCACATG
20709196 CTGGGCTCGG
Statistics
Matches: 710, Mismatches: 53, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
762 42 0.06
763 146 0.21
764 223 0.31
765 40 0.06
766 68 0.10
767 18 0.03
768 90 0.13
769 29 0.04
770 54 0.08
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (770 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTGTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CGTCAAAAAAATTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTA
CGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCCGCTCATTTCGT
CGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGCTACGGCA
GCAGGATCGATGGCACACAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGG
CCGGCTGAACAACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCA
Found at i:20709140 original size:26 final size:26
Alignment explanation
Indices: 20709110--20709162 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20709100 TTTGACTTAG
20709110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20709136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20709162 G
1 G
20709163 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20710973 original size:26 final size:26
Alignment explanation
Indices: 20710935--20710987 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20710925 GTTGACTTAG
20710935 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
20710961 GCATACGGCGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20710987 G
1 G
20710988 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20711834 original size:25 final size:25
Alignment explanation
Indices: 20711806--20711859 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
20711796 TGGGTTGACT
20711806 TAAGCATACAGAGTTCATTCCAGTC
1 TAAGCATACAGAGTTCATTCCAGTC
*
20711831 TAAGCATACGGAGTTCATTCCAGTC
1 TAAGCATACAGAGTTCATTCCAGTC
20711856 TAAG
1 TAAG
20711860 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (25 bp):
TAAGCATACAGAGTTCATTCCAGTC
Found at i:20714364 original size:26 final size:26
Alignment explanation
Indices: 20714324--20714378 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
20714314 TGGGTTGACT
* *
20714324 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
20714350 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
20714376 TAA
1 TAA
20714379 AATTGGATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:20716120 original size:26 final size:26
Alignment explanation
Indices: 20716084--20716133 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20716074 GACTTAGGCG
20716084 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20716110 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20716134 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20717829 original size:59 final size:59
Alignment explanation
Indices: 20717762--20718059 Score: 429
Period size: 58 Copynumber: 5.0 Consensus size: 59
20717752 TGTTCTTGTG
20717762 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* *
20717821 TAAGGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGGAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* * * * *
20717879 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTT
* * * *
20717939 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
* * *
20717997 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTT-GAAAATTT-ATTTT
20718058 TA
1 TA
20718060 TTTAAAGAAA
Statistics
Matches: 212, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
58 91 0.43
59 69 0.33
60 45 0.21
61 7 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTT
Found at i:20717990 original size:118 final size:117
Alignment explanation
Indices: 20717762--20718056 Score: 441
Period size: 118 Copynumber: 2.5 Consensus size: 117
20717752 TGTTCTTGTG
* **
20717762 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAAGG
1 TAAGGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGG
* * *
20717826 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTT
65 AAAATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTT
* *
20717879 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGG
1 TAAGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGG
*
20717944 AAAATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTT
65 AAAATTGATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTT
*
20717997 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTT
20718057 TTATTTAAAG
Statistics
Matches: 162, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
116 2 0.01
117 49 0.30
118 98 0.60
119 13 0.08
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (117 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGA
AAATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTT
Found at i:20718085 original size:6 final size:6
Alignment explanation
Indices: 20718074--20718124 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
20718064 AAGAAAATAG
* * *
20718074 AAAAAT AAAAAT AGAAAA- ATAAAG AAAAAT -AAAAC AAAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
20718121 AAAA
1 AAAA
20718125 TTAAGATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
5 7 0.19
6 26 0.70
7 4 0.11
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:20718086 original size:14 final size:14
Alignment explanation
Indices: 20718067--20718096 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
20718057 TTATTTAAAG
20718067 AAAATAGAAAAATA
1 AAAATAGAAAAATA
20718081 AAAATAGAAAAATA
1 AAAATAGAAAAATA
20718095 AA
1 AA
20718097 GAAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20718118 original size:17 final size:16
Alignment explanation
Indices: 20718074--20718124 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 16
20718064 AAGAAAATAG
20718074 AAAAATAAAAATAGAAA
1 AAAAATAAAAATA-AAA
*
20718091 AATAAAGAAAAATAAAA
1 AA-AAATAAAAATAAAA
20718108 CAAAAATAAAAATAAAA
1 -AAAAATAAAAATAAAA
20718125 TTAAGATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (16 bp):
AAAAATAAAAATAAAA
Found at i:20718133 original size:17 final size:16
Alignment explanation
Indices: 20718076--20718150 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 16
20718066 GAAAATAGAA
*
20718076 AAATAAAAATAGAAAAAT
1 AAATAAAAAT--AAAATT
* **
20718094 AAAGAAAAATAAAACAA
1 AAATAAAAATAAAA-TT
20718111 AAATAAAAATAAAATT
1 AAATAAAAATAAAATT
* *
20718127 AAGATAAAAAGAATATT
1 AA-ATAAAAATAAAATT
20718144 AAATAAA
1 AAATAAA
20718151 CCTAATCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
16 11 0.23
17 28 0.58
18 9 0.19
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (16 bp):
AAATAAAAATAAAATT
Found at i:20718364 original size:15 final size:17
Alignment explanation
Indices: 20718333--20718370 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
20718323 GGTCAGGAAG
20718333 CGGGTCGATGCTCGGGT
1 CGGGTCGATGCTCGGGT
20718350 CGGGTCGA-G-TCGGGT
1 CGGGTCGATGCTCGGGT
*
20718365 CAGGTC
1 CGGGTC
20718371 ATGGCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 1 0.05
17 8 0.40
ACGTcount: A:0.08, C:0.24, G:0.47, T:0.21
Consensus pattern (17 bp):
CGGGTCGATGCTCGGGT
Found at i:20718577 original size:20 final size:20
Alignment explanation
Indices: 20718552--20718591 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20718542 TTCACTGGAT
*
20718552 TCTGGGTTTCGTCATCGGAA
1 TCTGGGTTTCGTCACCGGAA
*
20718572 TCTGGGTTTCTTCACCGGAA
1 TCTGGGTTTCGTCACCGGAA
20718592 GCTCACCGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.35
Consensus pattern (20 bp):
TCTGGGTTTCGTCACCGGAA
Found at i:20718599 original size:11 final size:11
Alignment explanation
Indices: 20718583--20718621 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
20718573 CTGGGTTTCT
20718583 TCACCGGAAGC
1 TCACCGGAAGC
* *
20718594 TCACCGAAAGT
1 TCACCGGAAGC
*
20718605 TCACCGGAAGG
1 TCACCGGAAGC
20718616 TCACCG
1 TCACCG
20718622 ATTTCTGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.28, C:0.33, G:0.26, T:0.13
Consensus pattern (11 bp):
TCACCGGAAGC
Found at i:20719190 original size:13 final size:13
Alignment explanation
Indices: 20719155--20719217 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
20719145 TTATTAACAG
* *
20719155 ATAATACAATAAG
1 ATAATACAAAAAA
20719168 ATAA-ATCAAAAAA
1 ATAATA-CAAAAAA
*
20719181 ATATTACAAAAAA
1 ATAATACAAAAAA
20719194 ATAATA-AAAAATA
1 ATAATACAAAAA-A
20719207 ATAATA-AAAAA
1 ATAATACAAAAA
20719218 TAACTTATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
12 6 0.14
13 36 0.84
14 1 0.02
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.21
Consensus pattern (13 bp):
ATAATACAAAAAA
Found at i:20719197 original size:26 final size:24
Alignment explanation
Indices: 20719155--20719220 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 24
20719145 TTATTAACAG
* *
20719155 ATAATACAATAAGATAAATCAAAAAA
1 ATAATACAAAAAAATAAAT--AAAAA
*
20719181 ATATTACAAAAAAAT-AATAAAAA
1 ATAATACAAAAAAATAAATAAAAA
20719204 ATAATA-ATAAAAAATAA
1 ATAATACA-AAAAAATAA
20719221 CTTATAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 1 0.03
23 17 0.50
24 1 0.03
25 3 0.09
26 12 0.35
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.21
Consensus pattern (24 bp):
ATAATACAAAAAAATAAATAAAAA
Found at i:20719202 original size:23 final size:23
Alignment explanation
Indices: 20719176--20719220 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
20719166 AGATAAATCA
*
20719176 AAAAAATATTACA-AAAAAATAAT
1 AAAAAATAATA-ATAAAAAATAAT
20719199 AAAAAATAATAATAAAAAATAA
1 AAAAAATAATAATAAAAAATAA
20719221 CTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAAAATAATAATAAAAAATAAT
Found at i:20719215 original size:21 final size:21
Alignment explanation
Indices: 20719191--20719337 Score: 59
Period size: 24 Copynumber: 6.6 Consensus size: 21
20719181 ATATTACAAA
20719191 AAAATAATAAAAAATAATAAT
1 AAAATAATAAAAAATAATAAT
***
20719212 AAAA-AATAACTTATAAT-AT
1 AAAATAATAAAAAATAATAAT
* * *
20719231 ATAATAAATATAGAACTATATAAAT
1 AAAAT-AATA-AAAAATA-AT-AAT
* * *
20719256 AAAATACAT-ATAAATATTAAC
1 AAAATA-ATAAAAAATAATAAT
20719277 AAAATAAATAAATAAATAAGTAA-
1 AAAAT-AATAAA-AAATAA-TAAT
*
20719300 AAATATACATATAATAATAAATAAT
1 AAA-ATA-ATA-AAAAAT-AATAAT
20719325 AAAATACATAAAA
1 AAAATA-ATAAAA
20719338 TACAGAAGAA
Statistics
Matches: 93, Mismatches: 17, Indels: 30
0.66 0.12 0.21
Matches are distributed among these distances:
19 5 0.05
20 10 0.11
21 17 0.18
22 6 0.06
23 18 0.19
24 22 0.24
25 15 0.16
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (21 bp):
AAAATAATAAAAAATAATAAT
Found at i:20719261 original size:25 final size:24
Alignment explanation
Indices: 20719202--20719286 Score: 63
Period size: 25 Copynumber: 3.6 Consensus size: 24
20719192 AAATAATAAA
*
20719202 AAATAATAATAAA-AAATAACT-TAT
1 AAATAA-AATAAATATA-AACTATAT
*
20719226 AATATATAATAAATATAGAACTATAT
1 AA-ATAAAATAAATATA-AACTATAT
*
20719252 AAATAAAATACATATAAA-TAT-T
1 AAATAAAATAAATATAAACTATAT
*
20719274 -AACAAAATAAATA
1 AAATAAAATAAATA
20719287 AATAAATAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
21 11 0.22
22 1 0.02
23 3 0.06
24 10 0.20
25 21 0.41
26 5 0.10
ACGTcount: A:0.65, C:0.05, G:0.01, T:0.29
Consensus pattern (24 bp):
AAATAAAATAAATATAAACTATAT
Found at i:20719331 original size:24 final size:24
Alignment explanation
Indices: 20719253--20719339 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
20719243 GAACTATATA
*
20719253 AATAAAATACATAT-A-AAT-ATT
1 AATAAAATACATATAATAATAAAT
* * *
20719274 AACAAAATAAATA-AATAAATAAGT
1 AATAAAATACATATAAT-AATAAAT
20719298 AA-AAATATACATATAATAATAAAT
1 AATAAA-ATACATATAATAATAAAT
*
20719322 AATAAAATACATAAAATA
1 AATAAAATACATATAATA
20719340 CAGAAGAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
21 12 0.23
23 6 0.11
24 29 0.55
25 6 0.11
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.26
Consensus pattern (24 bp):
AATAAAATACATATAATAATAAAT
Found at i:20719649 original size:43 final size:42
Alignment explanation
Indices: 20719588--20719850 Score: 372
Period size: 41 Copynumber: 6.3 Consensus size: 42
20719578 TTTTACCAAA
* *
20719588 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-ATAAATT
***
20719631 GCTCCTCTAAACAGAGGCTGAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-ATAAATT
*
20719674 GCTCCTCTAAACAGAGGCACCATGACTTTGA-AAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
* * *
20719715 GCTCTTCTAAACAGAGGCACCATGACTTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAATAAATT
20719757 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
*
20719798 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAATAAATT
20719840 GCTCCTCTAAA
1 GCTCCTCTAAA
20719851 TGGAAAGTAA
Statistics
Matches: 204, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
41 71 0.35
42 64 0.31
43 69 0.34
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
Found at i:20719784 original size:83 final size:83
Alignment explanation
Indices: 20719588--20719850 Score: 402
Period size: 83 Copynumber: 3.1 Consensus size: 83
20719578 TTTTACCAAA
* * ***
20719588 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCTGAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
*
20719653 CGAC-TTTGAGAAACATAAATT
64 CGACTTTTG-GAAA-GTAAATT
* * *
20719674 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTGCTCTTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
20719739 ACTTTTGGAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
20719757 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
20719822 ACTTTTGGAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
20719840 GCTCCTCTAAA
1 GCTCCTCTAAA
20719851 TGGAAAGTAA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
83 97 0.59
84 32 0.20
85 7 0.04
86 28 0.17
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGGAAAGTAAATT
Found at i:20719859 original size:24 final size:24
Alignment explanation
Indices: 20719827--20719874 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
20719817 CCACGACTTT
20719827 TGGAAAGTAAATTGCTCCTCTAAA
1 TGGAAAGTAAATTGCTCCTCTAAA
20719851 TGGAAAGTAAATTGCTCCTCTAAA
1 TGGAAAGTAAATTGCTCCTCTAAA
20719875 CAGAGGCACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (24 bp):
TGGAAAGTAAATTGCTCCTCTAAA
Found at i:20719899 original size:66 final size:66
Alignment explanation
Indices: 20719792--20719916 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
20719782 CTTTGAAAAA
20719792 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAATGGAAA
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAATGGAAA
20719857 G
66 G
*
20719858 TAAATTGCTCCTCTAAACAGAGGCACCATGAC-TTTGAGAAAGTAAATTGCTCCTCTAAA
1 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATTGCTCCTCTAAA
20719917 CAGAGGCACC
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
65 4 0.07
66 53 0.93
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (66 bp):
TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAATGGAAA
G
Found at i:20719912 original size:42 final size:42
Alignment explanation
Indices: 20719853--20720078 Score: 368
Period size: 42 Copynumber: 5.4 Consensus size: 42
20719843 CCTCTAAATG
*
20719853 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGA
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
20719895 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
* * *
20719937 -AAAATAAATTGCTCCTCTAAGCAGAGGCACCACAACTTTTG-
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGA
*
20719978 GAAAGTAAATTGCTCCTTTAAACAGAGGCACCACGACTTTGA
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
20720020 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG-
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGA
20720062 GAAAGTAAATTGCTCCT
1 GAAAGTAAATTGCTCCT
20720079 TGACAATCAT
Statistics
Matches: 171, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
41 37 0.22
42 130 0.76
43 4 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (42 bp):
GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
Found at i:20719945 original size:107 final size:107
Alignment explanation
Indices: 20719744--20719956 Score: 374
Period size: 107 Copynumber: 2.0 Consensus size: 107
20719734 CCATGACTTT
20719744 TGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAA
1 TGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAA
* *
20719809 CAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAA
66 CAGAGGCACCACGACTTTTGAAAAATAAATTGCTCCTCTAAA
* *
20719851 TGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATTGCTCCTCTAA
1 TGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAATTGCTCCTCTAA
20719916 ACAGAGGCACCACGAC-TTTGAAAAATAAATTGCTCCTCTAA
65 ACAGAGGCACCACGACTTTTGAAAAATAAATTGCTCCTCTAA
20719957 GCAGAGGCAC
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
107 66 0.65
108 35 0.35
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (107 bp):
TGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAA
CAGAGGCACCACGACTTTTGAAAAATAAATTGCTCCTCTAAA
Found at i:20719979 original size:149 final size:149
Alignment explanation
Indices: 20719709--20719999 Score: 530
Period size: 149 Copynumber: 2.0 Consensus size: 149
20719699 CTTTGAAAAA
*
20719709 TAAATTGCTCTTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
*
20719774 CACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAAT
66 CACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAAT
20719839 TGCTCCTCTAAATGGAAAG
131 TGCTCCTCTAAATGGAAAG
20719858 TAAATTGCTCCTCTAAACAGAGGCACCATGAC-TTTGAGAAAGTAAATTGCTCCTCTAAACAGAG
1 TAAATTGCTCCTCTAAACAGAGGCACCATGACTTTTG-GAAAGTAAATTGCTCCTCTAAACAGAG
*
20719922 GCACCACGACTTTGAAAAATAAATTGCTCCTCTAAGCAGAGGCACCACAACTTTTGGAAAGTAAA
65 GCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAA
*
20719987 TTGCTCCTTTAAA
130 TTGCTCCTCTAAA
20720000 CAGAGGCACC
Statistics
Matches: 137, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
148 4 0.03
149 133 0.97
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (149 bp):
TAAATTGCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
CACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAAT
TGCTCCTCTAAATGGAAAG
Found at i:20720000 original size:83 final size:84
Alignment explanation
Indices: 20719853--20720079 Score: 377
Period size: 83 Copynumber: 2.7 Consensus size: 84
20719843 CCTCTAAATG
* * *
20719853 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGAC-TTTGAGAAAGTAAATTGCTCCTCTAAA
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATTGCTCCTTTAAA
20719917 CAGAGGCACCACGACTTTGA
65 CAGAGGCACCACGACTTTGA
* *
20719937 -AAAATAAATTGCTCCTCTAAGCAGAGGCACCACAACTTTTGGAAAGTAAATTGCTCCTTTAAAC
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTTTAAAC
20720001 AGAGGCACCACGACTTTGA
66 AGAGGCACCACGACTTTGA
*
20720020 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTT
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTT
20720080 GACAATCATG
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
83 73 0.55
84 60 0.45
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (84 bp):
GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTTTAAAC
AGAGGCACCACGACTTTGA
Found at i:20721361 original size:15 final size:15
Alignment explanation
Indices: 20721341--20721377 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
20721331 CATTTTCTCA
*
20721341 TTTCTTTCTTTTTTT
1 TTTCTTTCCTTTTTT
20721356 TTTCTTTCCTTTTTT
1 TTTCTTTCCTTTTTT
*
20721371 TTCCTTT
1 TTTCTTT
20721378 TTTCATCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTCTTTCCTTTTTT
Found at i:20721363 original size:26 final size:26
Alignment explanation
Indices: 20721324--20721380 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
20721314 TTTGAATATC
*
20721324 TTTTTTTCATTTTCTCATTTCTTTCTTT
1 TTTTTTTCA-TTTC-CATTTCTTTCCTT
* *
20721352 TTTTTTTC-TTTCCTTTTTTTTCCTT
1 TTTTTTTCATTTCCATTTCTTTCCTT
20721377 TTTT
1 TTTT
20721381 CATCATCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 14 0.54
26 4 0.15
28 8 0.31
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTTTTCATTTCCATTTCTTTCCTT
Found at i:20725328 original size:58 final size:60
Alignment explanation
Indices: 20725238--20725472 Score: 295
Period size: 58 Copynumber: 4.0 Consensus size: 60
20725228 TCTTGTGTAG
*
20725238 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTCTTTTGGAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* **
20725296 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATATTTTTTTGGAAACTTTGATTTTTAA
*** *
20725356 GG-AAATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTT-GAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* * *
20725413 GGAAAATTGATACTTTCAACTTTTCCCTAAAATTATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGGAAACTTTGATTTTTA
20725473 TTTAAAGAAA
Statistics
Matches: 154, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
57 9 0.06
58 77 0.50
59 46 0.30
60 15 0.10
61 7 0.05
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAACTTTGATTTTTAA
Found at i:20725387 original size:117 final size:118
Alignment explanation
Indices: 20725241--20725469 Score: 358
Period size: 117 Copynumber: 1.9 Consensus size: 118
20725231 TGTGTAGGGA
* *
20725241 AAATTGATACTTTCAACTTTTCCCAAAAAA-TATTCTTTTGGAAATTTATTTTTAAGGAAAATTG
1 AAATTGATACTTTCAACTTTTCCCAAAAAACCATT-TTTTGAAAATTTATTTTTAAGGAAAATTG
20725305 ATACTTTCAACTTTT-CCTCAAAAATATTTTTTTT-GAAACTTTGATTTCCAAGG
65 ATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTGGAAACTTTGATTTCCAAGG
*
20725358 AAATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAAGGAAAATTG
1 AAATTGATACTTTCAACTTTTCC-CAAAAAACCATTTTTTGAAAATTTATTTTTAAGGAAAATTG
* *
20725422 ATACTTTCAACTTTTCCCTAAAATTATTTTTTTTGGAAATTTTGATTT
65 ATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAACTTTGATTT
20725470 TTATTTAAAG
Statistics
Matches: 103, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
117 85 0.83
118 18 0.17
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (118 bp):
AAATTGATACTTTCAACTTTTCCCAAAAAACCATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAACTTTGATTTCCAAGG
Found at i:20725500 original size:15 final size:15
Alignment explanation
Indices: 20725480--20725538 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
20725470 TTATTTAAAG
*
20725480 AAAATAGAATAATAA
1 AAAATAGAAAAATAA
20725495 AAAATAGAAAAATAA
1 AAAATAGAAAAATAA
* *
20725510 AGAAA-AGTAAAA-CA
1 A-AAATAGAAAAATAA
20725524 AAAAT--AAAAATAA
1 AAAATAGAAAAATAA
20725537 AA
1 AA
20725539 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
12 4 0.11
13 6 0.17
14 2 0.06
15 21 0.58
16 3 0.08
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (15 bp):
AAAATAGAAAAATAA
Found at i:20725547 original size:17 final size:16
Alignment explanation
Indices: 20725525--20725564 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20725515 AGTAAAACAA
*
20725525 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
20725541 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
20725558 AAATAAA
1 AAATAAA
20725565 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:20726664 original size:12 final size:12
Alignment explanation
Indices: 20726617--20726671 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
20726607 TTAACAGAAA
*
20726617 AAAAAAATAAGT
1 AAAAAAATAAAT
*
20726629 AAAAATATAAAT
1 AAAAAAATAAAT
20726641 ATAATAATAATAAAT
1 A-AA-AA-AATAAAT
*
20726656 AAAAAAATACAT
1 AAAAAAATAAAT
20726668 AAAA
1 AAAA
20726672 TACAAAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 21 0.58
13 4 0.11
14 4 0.11
15 7 0.19
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (12 bp):
AAAAAAATAAAT
Found at i:20726670 original size:81 final size:79
Alignment explanation
Indices: 20726523--20726670 Score: 183
Period size: 81 Copynumber: 1.8 Consensus size: 79
20726513 AAATCAAAAA
* * * * * * *
20726523 AAATATTACAAGAAAAATAATAATAATAAATAAATTATAATATATAATAAATATAGAACTATATA
1 AAATATTACAAAAAAAAAAATAATAATAAATAAAATATAATATATAATAAATAAAAAAATACATA
20726588 AATAAAATACATAC
66 AATAAAATACATAC
20726602 AAATATTAACAGAAAAAAAAAATAAGTAA-AAATATAAATATAATA-ATAATAAATAAAAAAATA
1 AAATATT-ACA-AAAAAAAAAATAA-TAATAAATA-AAATATAATATATAATAAATAAAAAAATA
20726665 CATAAA
62 CATAAA
20726671 ATACAAAAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 7 0.12
80 3 0.05
81 36 0.62
82 12 0.21
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.26
Consensus pattern (79 bp):
AAATATTACAAAAAAAAAAATAATAATAAATAAAATATAATATATAATAAATAAAAAAATACATA
AATAAAATACATAC
Found at i:20726673 original size:21 final size:21
Alignment explanation
Indices: 20726538--20726673 Score: 61
Period size: 21 Copynumber: 6.5 Consensus size: 21
20726528 TTACAAGAAA
*
20726538 AATAATAAT-AATAAATAAAT
1 AATAATAATAAATAAAAAAAT
* * * *
20726558 TATAAT-ATATAATAAATATAG
1 AATAATAATA-AATAAAAAAAT
*
20726579 AACT-AT-ATAAATAAAATACAT
1 AA-TAATAATAAATAAAA-AAAT
* * *
20726600 ACA-AATATTAACAGAAAAAAAA
1 A-ATAATAATAA-ATAAAAAAAT
* *
20726622 AATAAGTAA-AAATATAAATAT
1 AATAA-TAATAAATAAAAAAAT
20726643 AATAATAATAAATAAAAAAAT
1 AATAATAATAAATAAAAAAAT
20726664 ACATAA-AATA
1 A-ATAATAATA
20726674 CAAAAGAAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 23
0.68 0.14 0.18
Matches are distributed among these distances:
19 2 0.02
20 14 0.16
21 47 0.55
22 16 0.19
23 7 0.08
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (21 bp):
AATAATAATAAATAAAAAAAT
Done.