Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 117 of 117
Found at i:20727560 original size:26 final size:26
Alignment explanation
Indices: 20727524--20727574 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20727514 TGACTTAGGT
20727524 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
20727550 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20727575 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20728478 original size:26 final size:26
Alignment explanation
Indices: 20728426--20728478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20728416 GTTGACTTAG
*
20728426 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20728452 GCATACGGAGTTCGTTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20728478 G
1 G
20728479 ATGGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20730706 original size:854 final size:854
Alignment explanation
Indices: 20729060--20732298 Score: 4480
Period size: 854 Copynumber: 3.7 Consensus size: 854
20729050 CTAAGCATAT
* ** * * *
20729060 GGAGTTCATTCCCAGTCTAAGATCAAATCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAATCTAAGATCGGA-CCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAG
* * * * **
20729124 GCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCATCGACGGAGCATCGCTGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTG
* ** * *
20729189 ACCGGC-AGGATTGGGGTTTTGGC-AATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
130 ACCGGCGA-CATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
20729252 GGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
20729317 TTTGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGGAATGGGGA
259 CTTGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
* *
20729382 CACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGTTGAATTGTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * *
20729447 GTCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTT
* * * *
20729512 AAAAAATCCCGAACCGCAAAACGTTTCAAAAGTTGCAAAAAATAGAAAACGAGTCATCTTGCTAT
454 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCATCTTGCCAT
*
20729577 GAAACTTCATGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGC
* *
20729642 ATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTGGCATAGTG
584 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTGGCATAGTG
20729707 CCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTC
649 CCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTC
*
20729772 TAAGATCGGACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGGCACGCAGAGGGGGGCCCGGCCG
714 TAAGATCGAACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGGCACGCAGAGGGGGGCCCGGCCG
*
20729837 ATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTG
779 ATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
20729902 ACTTAGGATAC
844 ACTTAGGATAC
20729913 GGAGTTCATTCCCAATCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGG
1 GGAGTTCATTCCCAATCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGG
20729978 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
20730043 CCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
20730108 TGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
20730173 TGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGGAATGGGGACA
261 TGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
* * *
20730238 CTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGT
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* *
20730303 CAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTTAA
391 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTTAA
* * * * *
20730368 AAAATCCCGAACCGCAAAACGTTTCGAAAGTTGTAAAAAATAGAAAATGAGTCATCTTGCTATGA
456 AAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCATCTTGCCATGA
*
20730433 AACTTCATGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCAT
521 AACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCAT
*
20730498 GTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTGGCATAGTGCC
586 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTGGCATAGTGCC
*
20730563 CGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTCTA
651 CGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTCTA
20730628 AGATCGAACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGGCACGCAGAGGGGGGCCCGGCCGAT
716 AGATCGAACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGGCACGCAGAGGGGGGCCCGGCCGAT
20730693 CCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGAC
781 CCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGAC
20730758 TTAGGATAC
846 TTAGGATAC
20730767 GGAGTTCATTCCCAATCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGG
1 GGAGTTCATTCCCAATCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGG
*
20730832 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
*
20730897 CCGGCGGCATTGGGGTTCCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
20730961 TGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
20731026 TGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGGGACA
261 TGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
* * * **
20731091 CTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGGGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* * * * * *
20731156 CAAAAAAAATACTAGGATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTTCGAAAAAATTTTAG
391 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTTAA
* ** * * *
20731221 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGA
456 AAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCATCTTGCCATGA
* * * * *
20731286 AACTTGACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCAC
521 AACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCA-
* * *
20731351 T-TAGAAATATGAAGATGTGGCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCC
585 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTA-----TG-GC-T---
* * *
20731415 GTCTCTTTGACAGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
640 G-------G-CA----TAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * ** * * *
20731480 ATACGGAGTTCATTCCCACTCTAAGATC-AGATCGGACCGAGGGTTGTGGTAACATGATCGGTAG
693 AGACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGG
* * ** * ** * **
20731544 CACGTAAAGGGGAACCCGACCGATCCCC-AGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCAC
757 CACGCAGAGGGGGGCCCGGCCGATCCCCGA-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGC
* * *
20731608 CCGCACACTCGTTTCATTGGTTGACTTAGGCATAC
821 CCGCACGCTCGTTTCGTGGGTTGACTTAGG-ATAC
* *
20731643 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCTTTCCCAGTCGAAGATCGGACTGGACTGTGGG
1 GGAGTTCATTCCCAATCTAAG-AT-C-G-G------ACC-GT-----A-C---C--GA----GGG
* * **
20731708 TT-TCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCA
40 TTGT-GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
** * * * * ** * ** * *
20731772 TCACCGAACCATCGCCGGAGAACCTGACCGACGGTATTGGAGTTCCGATGATCGGGCGGGCCGTG
104 TCGTCGGAGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCG-G
*
20731837 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCT
168 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * **
20731902 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTATGCTGCCAAC
233 CATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
* * * *
20731967 AGCCATTAAAGTGTCTGAAATGGGGAGACTTTATTCAAATGGTCACAAAATCTTGTACACTTTGA
298 AGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
20732032 GTTTTTAGCTGAA-TGTTTTTGTGCGTGCCAAAAAAAATAGAAGGATCACATCTACCAAGTTTGG
363 GTTTTTAGCTGAATTG-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * ** ** * *
20732096 GACCAAAACTCCTTTCGAAAAAAGTTTAAAAAATGTCGAACCATAAAAAGTTTCCAAAATTGTGA
427 GGCCAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAA
* * * *
20732161 AAAATAGAAAGCGAGTCATCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAA
492 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAA
* * *
20732226 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACGTACCA
557 GTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
20732291 CCCTATCG
622 CCCTATCG
20732299 TCGGGGGGGT
Statistics
Matches: 2168, Mismatches: 158, Indels: 69
0.91 0.07 0.03
Matches are distributed among these distances:
852 2 0.00
853 563 0.26
854 847 0.39
858 2 0.00
859 2 0.00
860 1 0.00
863 1 0.00
870 1 0.00
871 2 0.00
874 2 0.00
875 176 0.08
876 24 0.01
877 2 0.00
878 1 0.00
879 1 0.00
880 1 0.00
886 2 0.00
887 2 0.00
892 1 0.00
893 1 0.00
896 1 0.00
898 2 0.00
901 1 0.00
902 102 0.05
903 10 0.00
904 418 0.19
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (854 bp):
GGAGTTCATTCCCAATCTAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGA
CCGGCGACATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TGAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATTTTAA
AAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCAT
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTGGCATAGTGCC
CGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCCAGTCTA
AGATCGAACCAGACCAAGGGTTGCAGTAGCAAGATCGGTGGCACGCAGAGGGGGGCCCGGCCGAT
CCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGATAC
Found at i:20732711 original size:468 final size:467
Alignment explanation
Indices: 20731836--20732766 Score: 1407
Period size: 468 Copynumber: 2.0 Consensus size: 467
20731826 GGCGGGCCGT
**
20731836 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCC
1 GGGGGTGTGCAAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCC
* * *
20731901 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTATGCTGCCAA
66 TCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAA
* *
20731966 CAGCCATTAAAGTGTCTGAAATGGGGAGACTTTATTCAAATGGTCACAAAATCTTGTACACTTTG
131 CAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
20732031 AGTTTTTAGCTGAATGTTTTTGTGCGTGCCAAAAAAAATAGAAGGATCACATCTACCAAGTTTGG
196 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGCTTGG
* * * ** * * ***
20732096 GACCAAAACTCCTTTCGAAAAAAGTTTAAAAAATGTCGAACCATAAAAAGTTTCCAAAATTGTGA
261 GACAAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCACGA
*
20732161 AAAATAGAAAGCGAGTCATCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAA
326 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAA
* * *
20732226 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACGTACCA
391 TTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCA
20732291 CCCTATCGTCGG
456 CCCTATCGTCGG
* * * *
20732303 GGGGGTGTGCAAACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCTCCTATCCC
1 GGGGGTGTGCAAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCC
* *
20732368 TCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAA
* * * * *
20732433 TAGCTATTAAAGTGTCTGAATTGGGGACACTTTTTTTCAAATGGTCTCAAAATCTTGTACACTTC
131 CAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTATTCAAATGGTCACAAAATCTTGTACACTTC
* * *
20732498 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTCGTCTACCAAGCTTG
195 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGCTTG
* *
20732563 CGG-CAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCGAAGCC-CAAAAAGTTTCAAAAATCA
260 -GGACAAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCCGAA-CCACAAAAAGTTTCAAAAATCA
* * *
20732626 CGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
323 CGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTAT
* * *
20732691 GAATTTACAAGCCATAAAAATAGCATTGGCATGCATAAATATGAAGATGTGCCTGAACCAGCCTA
388 GAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTA
20732756 CCACCCTATCG
453 CCACCCTATCG
20732767 ATCAACGACT
Statistics
Matches: 415, Mismatches: 46, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
467 145 0.35
468 266 0.64
469 4 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (467 bp):
GGGGGTGTGCAAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCC
TCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTATGCTGCCAA
CAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGCTTGG
GACAAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCACGA
AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCA
CCCTATCGTCGG
Found at i:20733042 original size:26 final size:26
Alignment explanation
Indices: 20733005--20733057 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732995 GCTGACTTAG
* *
20733005 GCATACGGAGTTTATTCGC-AGTCTAA
1 GCATACGCAGTTCATTC-CTAGTCTAA
20733031 GCATACGCAGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
20733057 G
1 G
20733058 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCTAGTCTAA
Found at i:20734838 original size:26 final size:26
Alignment explanation
Indices: 20734808--20734860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20734798 GTTGACTTAG
20734808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20734834 GCATACGGAGTTCGTTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20734860 G
1 G
20734861 ATGGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20735222 original size:903 final size:902
Alignment explanation
Indices: 20732300--20737373 Score: 6715
Period size: 903 Copynumber: 5.6 Consensus size: 902
20732290 ACCCTATCGT
** * * *
20732300 CGGGGGGGTGTGCAAACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCTCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
20732365 CCCTCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
20732430 CAGTAGCTATTAAAGTGTCTGAATTGGGGACACTTTTTTTCAAATGGTCTCAAAATCTTGTACAC
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACAC
20732495 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC-TCGTCTACCAAG
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAT-GTCTACCAAG
* * *
20732559 CTTGCGG-CAAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCGAAGCC-CAAAAAGTTTCAAAA
259 TTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCACAAAAAGTTTCAAAA
*
20732622 ATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
322 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
20732687 GTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCATAAATATGAAGATGTGCCTGAA-CCA
387 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
20732751 GCCTACCACCCTATCGATCAACGACTTGCGCATACCGTCTCTCTGGTAGGCGTAGTGCCCGCCCG
452 -CCTACCACCCTATCGATCCACG-CTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCA
** * *
20732816 CCCG--T--CAACTCGTTTCGTCGGTTGGCTTAGGCATACGGCCG-TGATTCCCAGTCTAAGATC
515 CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATC
* * *** * * *
20732876 AGACCGGACCGAGGGTTGTGGCAGTAGGATCCATAGCACGCAGAGGGGGACCCGACCTATCCTCG
579 AGACCGGATCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
** * * *
20732941 GCTTGTGCATCCCGCCCCTCTGATCGGCTGAGCGCCCGCACGTTCATTTCGTGGGCTGACTTAGG
644 GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * ** *
20733006 CATACGGAGTTTATTCGCAGTCTAAGCATAC-GCAGTTCATTCCTAGTCTAAGATCGAACTGGAT
709 CATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATGGAACCAGAC
* * ** * * *
20733070 TGAGGGTTACGGGAGCACATTTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG
773 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGG
* * * * **
20733135 CACCATCGCCAGAGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGG
838 CACCATCACCGGAGCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGG
20733200 C
902 C
* * ** * **
20733201 CGAGGTGGGTGTGCACACAAAATGTGGGATGGGTGCTGGTACTTGGCCCACATATTGGCCCCCTA
1 CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
20733266 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTG-TG
65 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20733330 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
130 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
20733395 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGT
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
* * * ** **
20733460 TTGCGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTAAACCACAAAAAGTTTTGAAAATC
260 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* * *
20733525 GTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTA
325 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *** ** *
20733590 TGAATTTAGAAGCCATAAAAATCTTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
390 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* *
20733655 ACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGT----GCCCACCCG
455 ACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCG
* * ** *
20733716 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT
519 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * * *
20733781 GGATTGAGGGTTGTGGTAGTAGGACCGGTAGCATGCGGAAGGGGACCCGACCGATCCCCAGCTTG
584 GGATCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* *
20733846 TGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC
649 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
20733911 GGAGTTCATTCCCAATCTATGCATACAGAGTTCATTCCCAGTATAAGAT-CAGACCAGACTGAGG
714 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGGA-ACCAGACCGAGG
* *
20733975 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGGCACCA
778 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCA
* * * * *
20734040 TCACCGAAGCATCGCCGGAGAACCTGATCGACGGCATTGAGGTT-TCAGTGATCGGGGGGGC
843 TCACCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCTGA-CGATCGGGGGGGC
* *
20734101 C-GGGGGGTGTGCGCACATGTTGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
20734165 CCCTCATCAAACCTCAAGAAGTGACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
20734230 CAATAGCAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGT
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
20734294 TTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
196 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
* * * *
20734359 TGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCGAAAATCA
261 TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA
* * * *
20734424 TGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACCTCACGTGAAGGCTTTAGGGACCATTGTAC
326 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
20734489 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCAACATA
391 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* ** * *
20734554 CCACCCTATCGATCAACAGCTAACGCATCCCATCTCTCTGGCCGCGCGTAGTGCCCGCCCACCCG
456 CCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCAG-GCGTAGTGCCCGCCCACCCG
* *
20734619 CCTGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGACC
519 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
20734684 TGATTGAGGGTTGAGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTG
584 GGATCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * * *
20734749 CGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGTTCGTTTCATGGGTTGACTTAGGCATAC
649 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
20734814 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTTTAAGATGGAACTAGATCGAGGG
714 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGGAACCAGACCGAGGG
** * * * * * *
20734879 TTACAACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTTCGAGTCACCAT
779 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCAT
*
20734944 CACCGGAGCATTGCAGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATC-GGGGGGC
844 CACCGGAGCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGC
*
20735003 CGGGGGGGATGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 CGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
20735068 TCACTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
65 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
**
20735133 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAACAC
130 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * *
20735198 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCATGGCTAGCAAGT
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
* ** ***
20735263 TTGGGG-CAAAAA--CTCCCGAAAAAATTTTAGGAAATCCCGAACTGTAAAAAGTTTCAAAAATC
260 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* * **
20735325 GTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAATTTTCACGTGAAGGCTTAAGGGACCATTGTA
325 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20735390 TGAATTTACAAGCCATAAAAATGGCATTGGTACGCAAAAATATGAAGATGTGCCTAAACCCACCT
390 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
** *
20735455 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT-GCAAAACGTAGTGTCCGCCCACCC
455 ACCACCCTATCGATCCACG-CTTGCGCATCCCGTCTCTCTGGC-AGGCGTAGTGCCCGCCCACCC
* * * * * *
20735519 GCCCGCTCGCTAGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGAT
518 GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** * **
20735584 CGGATCGATGGTTGCA-GCAGCAGGATCGGCAGCTCACAGAGGGGGACCCGATATATCCCTGATT
583 CGGATCGAGGGTTG-AGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* * * * * * *
20735648 TGCGCATCTCGCCTCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGAATTACGCAT
647 TGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
20735713 ACGGAGTTCATTCCTAGTGTAAGCATACAGAGTTCATTCCCAGTCTTAGATCGG-ACCAGACCGA
712 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-GGAACCAGACCGA
* *
20735777 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGGGGCAC
776 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCAC
* * * * *
20735842 CATCACCGGAGCTTCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGT
841 CATCACCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGC
*
20735905 CGGGCGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
20735970 TCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTA
65 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20736035 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
130 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
20736100 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTATACCAAGT
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
* * * **
20736165 TTGGGGCCAAAACTCCTTTCGAAGAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATC
260 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* *
20736230 ATGAAAAATATAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
325 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20736295 TGAATTGT-CAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACC
390 TGAATT-TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * * * *
20736359 TACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGTC-GGCATAGTGCTCGCCCGCC
454 TACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGG-CAGGCGTAGTGCCCGCCCACC
* * * * * **
20736423 CGCCTTCTCGCTCGTTTTGTCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTTGA
517 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * * *
20736488 CCAGACCGAGGGTTGCGGCAGGAAGATCAGCAGCACGTAGAGGGTGACCCGGTCGATCCTCGGCA
582 CCGGATCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* * * * *
20736553 TATGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACATAGGCAT
647 TGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
20736618 ACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATTGAACCAGACCAAG
712 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGGAACCAGACCGAG
* * * * *
20736683 GGTTACGGCAGCACATGCCGGTCTCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACC
777 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACC
*** * *
20736748 ATCGTTGGAGCATCGTCGGAGAACCTGACCGATGGCATTAGGGTT-TCGACGATCGGGGGGGC
842 ATCACCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGGGGGC
*
20736810 C-GGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20736874 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
20736939 CAGTAGCCATTAAAATGTCTGAATTGGGGACACTTTTTTCAAATGCTCACAGAATCTTGTACACT
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
20737004 TCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAATTA-AAGAGATCAGGTCTGCCAACT
196 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG-GATCATGTCTACCAAGT
* * * ** **
20737068 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACGGCAAAAAGTTTTGAAAATC
260 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
* * * *
20737133 GTGAAAAATAGAAAACGAGTCGTCTTGTCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
325 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
20737198 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
390 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
20737263 ACCATCTTACCGATCCATGGCTTG-GACATCTCCGTTTCTCT-GCCGGCCGTAGTGCCCG----C
455 ACCACCCTATCGATCCA-CGCTTGCG-CATC-CCGTCTCTCTGGCAGG-CGTAGTGCCCGCCCAC
*
20737322 CCG-CT---CGCTCATTTCGTCGGTTGGCTTA-GCATACGGAGTTCATT-CCAGTCTA
516 CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
20737374 GATAGGGCGG
Statistics
Matches: 3665, Mismatches: 457, Indels: 109
0.87 0.11 0.03
Matches are distributed among these distances:
894 8 0.00
895 15 0.00
896 28 0.01
898 411 0.11
899 47 0.01
900 622 0.17
901 387 0.11
902 575 0.16
903 775 0.21
904 173 0.05
905 620 0.17
906 3 0.00
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCGCC
TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ATCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGGAACCAGACCGAGGGTT
ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCA
CCGGAGCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGC
Found at i:20736650 original size:26 final size:26
Alignment explanation
Indices: 20736614--20736666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20736604 GTTGACATAG
20736614 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20736640 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20736666 G
1 G
20736667 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20738323 original size:26 final size:26
Alignment explanation
Indices: 20738294--20738345 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20738284 GTTGACTTAG
* *
20738294 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20738320 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20738346 TATTAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20738776 original size:631 final size:631
Alignment explanation
Indices: 20737553--20738773 Score: 1799
Period size: 631 Copynumber: 1.9 Consensus size: 631
20737543 GAGGGTTTAC
* * * * **
20737553 GGCAGCAGGATCGACAGAATGCAGAGGGGGACCCCGATCGATCCCTGGCTTGTGCATCCCACCCC
1 GGCAGCAGGATCGACAGAACGCAAAGGGGGACCCAGATCGATCCCCGGCTTACGCATCCCACCCC
*
20737618 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTAGGCATACAGAGTTCATTCCCA
66 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGCAGGTTGACTAGGCATACAGAGTTCATTCCCA
* * *
20737683 GTCTAAGCATATGGAGTTCATTACCAGTATAAGATTGGATCGAACAGAGGGTTGCAGCAGCACAT
131 GTCTAAGCATATGGAGTTCATTACCAATATAAGATTAGACCGAACAGAGGGTTGCAGCAGCACAT
* *
20737748 GCTAGGCTCAGACATGTGCTGGAACCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGT
196 GCTAGGCTCAGACATGTGCTGGAACCGCATTTTTCTTCATCGGGGCACCATCACTGGAGCATCGC
* * **
20737813 CGGAGAACCTGACCGACGGTATCGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
261 CGGAGAACCTGACCGACGGCATCGGGGTTCCGACGATCCAGGGGGCCGGGGGGTGTGCGCACATG
* *
20737878 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
326 ATGTGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAA
*
20737943 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTCAAAGTGTCT
391 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCTTCAAAGTGTCT
*
20738008 GAAATGGGGACACTTTTTCTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
456 GAAATGGGGACACTTTTTCTAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
* * ***
20738073 TGTTTTGCATGCCAAGAAAAATTCAAGGATCGTGTCTACCAAGTTTGGGCCTAAAACTCTTTCCG
521 TGTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCTAAAACTCTTTCCG
20738138 AAAAAATTTTAAGAAATCCTGAACCACAGAAAGGATCGAGTGTTGT
586 AAAAAATTTTAAGAAATCCTGAACCACAGAAAGGATCGAGTGTTGT
* * ** *
20738184 GGCAGCAGGATCGGCAGCACGCAAAGGGGGATGCAG-TCGATCCCCGGCTTACGCATCCCGCCCC
1 GGCAGCAGGATCGACAGAACGCAAAGGGGGACCCAGATCGATCCCCGGCTTACGCATCCCACCCC
* * * * *
20738248 TCTGGCCGACTGAGGGCCCGTACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCTC
66 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGCAGGTTGAC-TAGGCATACAGAGTTCATTCCC
* * * * *
20738313 AGTCTAAGCATATGGAGTTCATTCCCAATCTAATATTAGACCGGATC-GAGGGTTGCGGCAGCAC
130 AGTCTAAGCATATGGAGTTCATTACCAATATAAGATTAGACC-GAACAGAGGGTTGCAGCAGCAC
* * *** * * *
20738377 ATGCTAGGCTCAGGCATTTGCTGGTGTCGTATTTTTCTTCATCGGGTCACCATC-GTCGGAGCAT
194 ATGCTAGGCTCAGACATGTGCTGGAACCGCATTTTTCTTCATCGGGGCACCATCACT-GGAGCAT
* * * *
20738441 CGCCGGAGAACCTTACCGGCGGCATTGGGGTTCCGACGATCCAGGGGGCTGGGGGGTGTGCGCAC
258 CGCCGGAGAACCTGACCGACGGCATCGGGGTTCCGACGATCCAGGGGGCCGGGGGGTGTGCGCAC
** *
20738506 ATGATGTGTGATGGGTGCAGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGA
323 ATGATGTGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGA
* *
20738571 GAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGCTTGCTGCCAGTAGCCTTTAAAGTG
388 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCTTCAAAGTG
* *
20738636 TCTGAAATGGGGACACTTTTT-TCAAATGGTCATAAAATCTTGTACACTTCGACTTTTTAGCTTA
453 TCTGAAATGGGGACACTTTTTCT-AAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGA
*
20738700 ATTTT-TTTGTGCATGCCAACAAAAATACAAGGATCACATCTCCCAAGTTTGGGGCC-AAAACTC
517 ATTTTGTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCTAAAACTC
20738763 TTT-CGAAAAAA
580 TTTCCGAAAAAA
20738774 ATTAAAAAAA
Statistics
Matches: 524, Mismatches: 60, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
630 75 0.14
631 441 0.84
632 8 0.02
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (631 bp):
GGCAGCAGGATCGACAGAACGCAAAGGGGGACCCAGATCGATCCCCGGCTTACGCATCCCACCCC
TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGCAGGTTGACTAGGCATACAGAGTTCATTCCCA
GTCTAAGCATATGGAGTTCATTACCAATATAAGATTAGACCGAACAGAGGGTTGCAGCAGCACAT
GCTAGGCTCAGACATGTGCTGGAACCGCATTTTTCTTCATCGGGGCACCATCACTGGAGCATCGC
CGGAGAACCTGACCGACGGCATCGGGGTTCCGACGATCCAGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCTTCAAAGTGTCT
GAAATGGGGACACTTTTTCTAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
TGTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCTAAAACTCTTTCCG
AAAAAATTTTAAGAAATCCTGAACCACAGAAAGGATCGAGTGTTGT
Found at i:20740824 original size:26 final size:26
Alignment explanation
Indices: 20740794--20740846 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20740784 GTTAACTTAG
20740794 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
20740820 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
20740846 G
1 G
20740847 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:20741725 original size:26 final size:26
Alignment explanation
Indices: 20741691--20741743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741681 GTTGACTTAG
20741691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20741717 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20741743 G
1 G
20741744 ATCGGACTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20743525 original size:26 final size:26
Alignment explanation
Indices: 20743489--20743566 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
20743479 TGACTTAGGC
20743489 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
20743515 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
*
20743541 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
20743567 TCGGACTAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:20744444 original size:26 final size:26
Alignment explanation
Indices: 20744408--20744460 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20744398 GTTGACTTAG
20744408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20744434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20744460 G
1 G
20744461 ATCGGACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20745333 original size:26 final size:26
Alignment explanation
Indices: 20745296--20745346 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20745286 TGACTTAGGG
* *
20745296 ATACAGATTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
20745322 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20745347 GTCGGATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20745747 original size:896 final size:894
Alignment explanation
Indices: 20739723--20752050 Score: 14286
Period size: 895 Copynumber: 13.7 Consensus size: 894
20739713 TCTACCAAGT
* * *
20739723 TTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* * * * * * * *
20739788 GGACCAATAGCACGTAGAGGGGGACCCGACCGATCCGCAGCTTGCGCATCCCGCCCTTCTGG-CT
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
* * * * *
20739852 GGCTAAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCCAA
131 -GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** **
20739917 GCACACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCGACAGTGCATGCTACG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
20739982 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGTGGCACCATCGTCGGAGCATCGTCAGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
20740047 ACCTGATCGACGACATTGGGGATCCGACGATCGGGGGGGTCGGTGGGGTGTGCGCACATGATGTG
324 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* *
20740112 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20740177 ACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * ** * *
20740242 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGTTGAATTTTTTTC
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** * *
20740307 TACATGCCAACAAAAAGACAGGGATCTTGTCTACCAAGTTTGGGGCCAAATCTCCTTCTGAAAAA
583 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** **
20740372 ATTTAAAAAAATCTTGAACAGC-AAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
648 ATTTTAAAAAATCCCGAACCTCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
20740435 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20740500 ATTGGCTAGCA-A-AAATGTGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTT
777 ATTGGC-A-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20740563 ACGCGTCCCGTCTCTCTGGCCGTCGTAGTGCCCCCCCGCCAGCCTGCTTGCTCGTTTCGCCGG
840 GCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCC--C--GCTCGTTTCGTCGG
* ** * * * **
20740626 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATC-GAAC-CACAGGTTACAGCAG
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGA-GGGTTGTAGCAG
* ** * * ** *
20740689 TAGGATC-AGCAGCACGCAGAGGGGGACCCAACCAATCTCCGGCTTGCGCATCCCGATCATCTGG
64 CAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * *
20740753 CCGGTTGAGCGCCCGCACGTTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCT
128 CCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
20740818 AAGCATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGC-AGTAGCACATGCT
193 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGA-CAGCACATGCT
* * * ** * **
20740882 AGGCTTGAGC-TGTGCTGGTG-TACA-TTTTCTTTTGCC-GGGCACCATCAACGGAGCATCGTCG
256 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCGTCGGAGCATCGTCG
* * * **
20740943 GAGAA-CTGAAACTG-CAGTATTAAGGTTCCGACG-T-GGGGGGG-CGAGGGGGTGTGCGGCACA
320 GAGAACCTG--ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGC-GCACA
* * ** * * * * *
20741003 TGATGTGCGATGGGGGCTAGTACTTGGGTCTTCT-TTAGCCCCCTATCCCTCGTCAAACATCGCG
381 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
20741067 AACGTGCACA-CCCCTT-AAGAGCATCTGAGATTATTACAGGTTTTGGCTACAAG-CGCCTTTAA
446 AAC-T-CACACCCCCTTAAAGAGCATTTGAGATT-TTACAGG-TTT-GCTGCCAGTAGCCATTAA
* *
20741129 AGTGTCTGAAAT-GGAACATTTTTTTTCAAAATGGTC-CAAAATCTTGGTACACTTCGAGTTTTT
506 AGTGTCTGAAATGGGGACA-CTTTTTTC-AAATGGTCACAAAATCTT-GTACACTTCGAG-TTTT
*
20741192 TAGCTAAACTTTTTTTGGTGCATGCCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
567 TAGCTGAA-TTTTTTT-GTGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * **
20741257 CCAAAACACCTTTTGAAAAAATTTTAAAAAATCTCGAACGGT-AAAAAGTTTTGAAAATCGTGAA
628 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC-CTCAAAAAGTTTCAAAAATCGTGAA
*
20741321 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
692 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * ** * *
20741386 TTACAAGCCATGAAAATGGTAGTGGCACGTAGAAATATGGAGATGTGCCTAAACCCGCCTACCAC
757 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
20741451 CCTATCGATCCACGGCTTGCGCATCTCGTCTCTCT-GCCTGGA-GTAGTGCCTGCTCGCCTGCTT
822 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC--GACGTAGTGCCCGCCCGCCCGCTC
*
20741514 ATTTCGTCGG
885 GTTTCGTCGG
* * * * * * *
20741524 TTGGCTTAGGCACATGGAGTTCATTACCAGTCTAAGATCAGACCAGATTGAGGGTTGCAACAACA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* * * * * *
20741589 GGATCGGCAGCACGTAGAGGGGGACCCGGCCGAT-CCCGGCTTGCGCATGCCACGCCTCTAG-CT
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
** *
20741652 GGCTGAGCGCTTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 -GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20741717 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGTACTGAGGGTTACGACAGCACATGCTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
20741782 CCCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATTGTCGGAGCATCG-CAGGAG
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * * ** *
20741846 AACCTGACCGACGACATTAGGGTTCCGACAATCGGGGGGGCTAGGGGGTGTGTGCACATGATGTG
323 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
20741911 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20741976 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
20742041 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTGTTTAGCTGAATTTTTTTG
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
20742106 TGCATGCCAAGAAAAATTCAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
583 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
20742171 ATTTTAAAAAATCCTGAACCAT-AAAAAGTTTCAAAAATCGTGAAAAATAGGAAACGAGTCATCT
648 ATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
20742235 TGCCATGAAACTTCATGTGAAGGCTGAAGGGACCATTGTATGAATTTAGAAGCCATGAAAATAGC
712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
20742300 ATTGGCGCACAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCAAAC-GCTG
777 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC--ACGGCT-
* * * * *
20742364 GGTGCATACCCCGTCTTCTCTGGCTGGACGTACG-GCCCCCGATCGTACGCCCACT-GTTCTTTC
839 TGCGCAT--CCCGTC-TCTCTGGC-CGACGTA-GTG--CCCG--C--CCGCCCGCTCG---TTTC
*
20742427 GTCGA
890 GTCGG
* * * * *
20742432 TTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* * * * * ** *
20742497 AGATCGACAGCATGCAGAGGGAGACCCGACTGATCCCCGGCTTGCGCATCCCATCCCTCTGG-AT
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
* * * * * *
20742561 GGCTGAGCGCCCACACGCTCGTTTCATAGGTTGACTTAGGCATACGAAATTTATTCCCAGTCTAA
131 -GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20742626 GCATTCGGAGTTCATTCCTAGTCTAAGATCCGACCAGACTGAGCGTTACGATAGCACATGCTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* ** *
20742691 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCAACGGGGCACCATCGTCGGAGCATCATCGGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** *
20742756 ACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGT
324 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
20742821 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
389 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20742886 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATG
454 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20742951 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
519 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
20743016 GCATGCC-AAAAAAATTCAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
584 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
20743080 TTTTAAAAAATCTTC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
649 TTTTAAAAAATC-CCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20743144 GCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
713 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *** *
20743208 TTGGCA-AGCAGAAATATGAAGATCTACCTAAACCCATGAACCACCCTATCGATCCATGGCTTGC
778 TTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
20743272 GCATCCCGTCTCTC-GGCCGACGTAGTGCCCGCTCATCCCCTCGCCCGCTCGTTTCGTCAG
842 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-------CC-CGCCCGCTCGTTTCGTCGG
* * * * *
20743332 TTGGATTAGGCATACGGAGTTTATTCCCAGACTAAGATCACACCAG-CT-AAGGTT-T-------
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* * * *
20743387 --A-CGACAGCACGCAGAGGGGGACCCGGCC-AGTCCTCGGCTTACACATCCAGCCCCTCTGGCC
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
20743448 GGCTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
130 TGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20743513 GAATACGGAGTTCATTCCCAATCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGAT
195 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C--AGA-C---C--G--
* * * * *
20743578 TTAGGGTTGC-AGCAGCACATGCTGGGCTCAGGCATGTGCTGGTACCACATTTTTCTTCGTCGAG
235 --AGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * *
20743642 ACACCATCGCCGGAGCAT-ATCCAGAGAACCTGACCGATGGCATTGGGGTTCC-AGCGATCGGGG
297 GCACCATCGTCGGAGCATCGT-CGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGG
* * * * *
20743705 GTGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCCT
360 G-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
20743770 CTATCCCCCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCG
424 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
20743835 CTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTA
489 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** * *
20743900 CAGTTCAAGTTTTTAGCTGAACGTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCA
554 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * *
20743965 AGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGT-AAAAAGTTTCAAA
619 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAA
* * *
20744029 AATCGTGAAAAATAGAAAATGAGTCATCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCAT
683 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *** *
20744094 TTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAACATGTGCCTAAACCC
748 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* *
20744159 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
813 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* **
20744224 CCTGCTCGTTTTATCGG
878 CCCGCTCGTTTCGTCGG
*
20744241 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCCA-ACCGAGGGTTGT-GACAG
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGTAG-CAG
* * * * * * * *
20744303 TAGGATTGACAGCACGCAGAGGGGTACCCGGCTGATCCCCGACTTGTGTATCCCACCCCTCTGGC
64 CAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
20744368 CGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
129 CTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
20744433 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCAATAGCACATGCTGG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACA-GACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
20744498 GCTCAGCCATGTGCTGGTGCCATC-TTTTTCTTCGCTGGGGCACCA---T--G-G---C--CAGA
258 GCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
20744551 GAACCTGACCGACGGTATCGGGGTTCC-AGCGATCGAGGGGGCGTGGGGGGTGTGCGCACATGAT
322 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGC-CGGGGGGTGTGCGCACATGAT
* * *
20744615 GTGCGATAGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACT
385 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
20744680 CACACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
450 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20744745 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGTGTTTTTAGCT-AATTTGT
515 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-T
*
20744809 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
579 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
20744874 AAAAATTTTAAAAAATCCCGAACCTCAAAAATTTTTGAAAATCCTGAAAAATAGAAAATGAGTCG
644 AAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
20744939 TCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAAT
709 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20745004 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAAGGCT
774 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
20745069 TGCGCATCCCTTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
839 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
** * * *
20745125 TTTATCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGC
1 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGC
* * * *
20745190 AAGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCC
65 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
20745255 TAC-GAAGCGGCCGCACGCTCGTTTTGTGGGTTGACTTAGGGATACAGATTTCATTCCTAGTCTA
130 TGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** *
20745319 AGCATACAGAGTTCATTCCCAGTCTAAGGTCGGATCAAACCAAGGGTTGCGACAATACATGCTAG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
20745384 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCCAGGGTACCAT-GATCGAAGCATCGTCGGA
258 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-TCGGAGCATCGTCGGA
* * *
20745448 AAACCTGACCGACGGTATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGT
322 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
** * *
20745513 GCGATGGGTGCCAGCACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
20745578 CACCCCCTTAAGGAGCATTTGAGATTTTACATGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAA
452 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
20745643 TGGGGACACTTTTTTCAAATGGTGACAAAATCTCGTACACTTTGATTTTTTAGCTGAATTTTTTT
517 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
20745708 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGATTCCAAAAA
582 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
20745773 AATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTTC-AAAATCTTGAAAAATAGAAAACGAGTCGT
647 AATTTTAAAAAATCCCGAACCT-CAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
20745836 CTTGCCATGAAACTTCTCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATG
710 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
20745901 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCAT
775 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20745966 GCGCATCCCATCTCTCTAGTCGGCGTAGTGCTCGCCCGCCCACCCGCCCGCTCGTTTCATCGG
840 GCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCG----CCCGCCCGCTCGTTTCGTCGG
* * * * * *
20746029 TTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACCAGATTGAGCGTTACT-GTAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT-GTAGCAGC
* * * * * * *** * *
20746093 AGAAT-TAGCAGCATGTAGAAGGGGACCCGGCCAATTTTCGGCTTGCGCAGCCCACCCCTCTGGC
65 AGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
20746157 CGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCTCAGTCTA
129 CTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
20746222 AG-AT-C--AG---------A--C------C-G---GACCGAGGGTTACGGCAGCACATGCTGGG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
20746262 CCCGGGCATGTGCTGGTACGGCATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCATCAGAG
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * * *
20746326 AACCTGATCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
323 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
20746391 CGATGGGTGCTAGTACATGGCACTTATATTGGCCCCTTATACCTCATCAAACCTCGAGAACTCAC
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20746456 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAG-CATTAAAGTGTCTGAAA
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAA
* * *
20746520 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAACTTTTTT
517 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
20746585 GTACACACCAAGAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
582 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
20746650 AATTTTAAAAAATCCCGAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
647 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
20746714 TGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGTCATAAAAATGGC
712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
20746779 ATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGGTTG
777 ATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
20746843 GGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCCCGCTCGCCCGCCCGCTCGTTTC
841 CGCATCCCGTCTCTCTGGCCGAC---GT-------AGT--G--C-C-CGCCCGCCCGCTCGTTTC
*
20746908 GTTGG
890 GTCGG
* * * *
20746913 TTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGA-CTGAACCGAGGGTTGTGGCAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTAGCAGC
* * *** ** *
20746977 AGGATCGATAGCATGCAGAGGGGGACCCGGCCGATCCCTAACTTGCGCATATCGCCCGTCTGGCC
65 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
20747042 -GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
130 TG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
20747106 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGTACCGAGGGTTGCGGCAACACATGCTGG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGACAGCACATGCTGG
* * * * * * **
20747171 GCTCAGGCTTGTGCTCGTGCCGTATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGTCGGAG
258 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *** *
20747236 AACCTGACCGACGGCATTGGGGTTCGGGC-AGTC-AGGGGGCCAGGGGGTGTGCGCAGGGGGTGT
323 AACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
20747299 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAATCA
387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
20747364 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAA
452 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20747429 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
517 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20747494 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTTCGAAAA
582 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** **
20747559 AATATTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTC
647 AAT-TTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20747624 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATAG
711 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20747689 CATTGGTACATAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
776 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
20747754 TGCATCCCGTCTCACTGGTCGACGTAGAGCCCGCTCGCCCGCCCATCTGCTTGTTTCGTCGG
841 CGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCG-CC--C-GCTCGTTTCGTCGG
* * * * * *
20747816 TTAGCTTAGGCATAGGGAGTTCATTCCCAGTCT-AGATCGGATCGGATTGAGGGTTGT-GCTAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGC-AGC
* ** * * * * *
20747879 AGGATCGGCAGCACATAGAGGTGGACCCGACCGATCCCCAGCTTGCGCGTCCTGCCCCTCTGGCC
65 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
20747944 AGCTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 TGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
20748009 GCTTACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCACATACTGGA
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
20748074 CTCGGGCATGTGCTGGTG-TGTATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * **
20748138 AGCTAACCGATAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATGT
324 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGT
**
20748203 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTG
387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
20748268 CACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGCAGCCATTAAAGTGTTTGAAA
452 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20748333 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
517 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
20748398 GTGCCTGCCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAAATCCATCTGAAAA
582 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
20748463 AATTTTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
647 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20748528 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20748593 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
777 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
20748658 GCATCCCGTCTCTTTGGCTGACGTAGTGCCCACCCACCCGCTCATTTTGTCGG
842 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
20748711 TTGCCTTAGGCATCCGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTACCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* * * ** * *
20748776 GGATC-AGCAGCACACAGTGGGAGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTC
66 GGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
20748840 GGCTGTGCACCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
130 TGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
20748905 GCATACGGAGTTCATTCCAAGTCTAAGATTGGACCAGATTGAGGGTTGCGGCAGCACATGTTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
20748970 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGC
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * ** ** * *
20749035 ATC-GTCGGA--GAACCT-GACTGGCGGC-ATTGAGGGGGGGCCGGGGGTGGTGTGCGCACATGA
324 ACCTGACCGACGGCA-TTGGGGTTCCGACGA-T-CGGGGGGGCC-GGGG-GGTGTGCGCACATGA
* * *
20749095 GGTGCGATGGGTGCCGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
384 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
20749160 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
449 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
20749225 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATCTT
514 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
20749290 TTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGACAAAACTCCTACCAA
579 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
**
20749355 AAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
644 AAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * * *
20749419 GTCTTGGCATAAAACTTCACGTGAAGGCTTACGGGACCATAGTATGAATTTACAAGCCATGAAAA
708 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
20749484 TGGCATTGGCACATACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
773 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
20749549 TTGTGTAACCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCACGCTCGTCTCGTCGG
838 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
20749606 TTGGCTTAGGCTTACGGAGTTCATTCCCAGTATAAGATCAGACTAGACCAAGGGTTGCAACAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
* ** * * ** *
20749671 AGATCGGTAGCACGCCGAAGGGGACCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-
66 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
* *
20749735 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAG--T--
131 G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** **
20749796 -C-TA---AG---A-T--C-G--T---AT----CAGACCGAGGGTTACGGTAGCACACACTGGGC
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * *
20749840 TCGGGCATGTGCTGGTGTCGCAATTTGCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
260 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * *
20749905 CCTGACCGGGCGGCATTGGGGTTCCGGCGATCGGAGGGGTCGGGGCGGGGGGTGTGCACACATGA
325 CCTGACC-GACGGCATTGGGGTTCCGACGATC---GGGG--GGGCCGGGGGGTGTGCGCACATGA
* * *
20749970 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAACCTTGAGAAC
384 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
20750034 TCACATCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
449 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* **
20750099 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAAATGAATTTT
514 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
20750164 TTTGTGCATGCCAAAAAAAATACAAGGATTACATCT---AAGTTTGGCGCCAAAACTCCTTCCGA
579 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
20750226 AAAAATTTTAAAAAATCTCGAACCGT-AAAAAATTTCAAAAATTGTGAAAAATCGAAAACGGGTC
644 AAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
20750290 GTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
708 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** *
20750355 TGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
773 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
20750420 TTGCGCATCTCGTCTCTATGGCCGGCGTAGTGCCCGCACTCCCGGCCCCCCGCCCGCCCGCCCGC
838 TTGCGCATCCCGTCTCTCTGGCCGACGTA------G---T---------------GCCCG--C-C
20750485 TCGCCCGCTCGTTTCGTCGG
876 -CGCCCGCTCGTTTCGTCGG
* * * ** * *
20750505 TTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGCGTTACAGTAGT
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTAGCAGC
* * * * * * *
20750569 AGGATCGACGGCACGTAGAGGGGGACCCAGTCGATGCCTGGCTTGCGTATCCCGCCCCTCTGGCC
65 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
20750634 GGCTGAGCGTCCGAACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 TGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
20750699 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCATACCAAGGGTTGTGACAGTGCATGCTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
20750764 CTCGAGCATGTGTTGGTGCCACATATTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
20750829 ACCTAACAGGCGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
324 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
20750894 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACCAGAACTCAC
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20750959 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20751024 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
20751089 TGCAAGCCAAAAAAAATTTAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
583 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
20751154 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAAGAGTCGTCTT
648 ATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
20751219 GCAATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
713 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
20751284 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCATGACTTGCG
778 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * *
20751349 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCGCTCATTTCGGCGG
843 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** * * *
20751401 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGA-CAGGATTGAGGGTTATGGCAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTGTAGCAGC
* * * * * *
20751465 AGGATC-AGCAGCACGTAGAGGGGGAACCGGCCAATTCCTGGCTTGCGCAT-CCGACCCTTCTGG
65 AGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGG
*
20751528 -CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTC
128 CCT-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
20751592 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCACATGCT
192 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCGACAGCACATGCT
* * ** ** * *
20751657 AGGCTCGTGCATGTGCTGGTGTTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCTTCGCCGG
256 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGG
* **
20751722 AGAACCTGACCGGCAACATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
321 AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
20751786 GTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCTTCATCAAACCTCAAGAACT
385 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
20751851 AACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGA
450 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20751916 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
515 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
20751981 TTATGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
580 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
20752046 AAAAT
645 AAAAT
20752051 CTGAGTTTTT
Statistics
Matches: 9819, Mismatches: 1266, Indels: 688
0.83 0.11 0.06
Matches are distributed among these distances:
869 84 0.01
870 2 0.00
871 221 0.02
872 1 0.00
873 9 0.00
874 183 0.02
875 54 0.01
876 178 0.02
877 384 0.04
878 4 0.00
879 3 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 12 0.00
884 692 0.07
885 31 0.00
886 229 0.02
887 129 0.01
888 8 0.00
889 5 0.00
890 3 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 227 0.02
895 1021 0.10
896 994 0.10
897 290 0.03
898 188 0.02
899 287 0.03
900 228 0.02
901 145 0.01
902 309 0.03
903 636 0.06
904 289 0.03
905 85 0.01
906 182 0.02
907 100 0.01
908 231 0.02
909 763 0.08
910 130 0.01
911 179 0.02
912 6 0.00
913 105 0.01
914 214 0.02
915 113 0.01
916 123 0.01
917 18 0.00
918 2 0.00
919 5 0.00
920 59 0.01
921 314 0.03
922 1 0.00
924 252 0.03
925 83 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGCAGCA
GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
Found at i:20747117 original size:26 final size:26
Alignment explanation
Indices: 20747081--20747133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20747071 GTTGACTTAG
* *
20747081 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20747107 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20747133 G
1 G
20747134 ATCAGACTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20747294 original size:13 final size:13
Alignment explanation
Indices: 20747276--20747301 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20747266 GTCAGGGGGC
20747276 CAGGGGGTGTGCG
1 CAGGGGGTGTGCG
20747289 CAGGGGGTGTGCG
1 CAGGGGGTGTGCG
20747302 ATGGGTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.62, T:0.15
Consensus pattern (13 bp):
CAGGGGGTGTGCG
Found at i:20748022 original size:26 final size:26
Alignment explanation
Indices: 20747986--20748035 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20747976 GACTTAGGCA
20747986 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
20748012 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20748036 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:20748916 original size:26 final size:26
Alignment explanation
Indices: 20748879--20748931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20748869 GTTGACTTAG
*
20748879 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
20748905 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
20748931 G
1 G
20748932 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:20749028 original size:11 final size:11
Alignment explanation
Indices: 20749012--20749044 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
20749002 ACCGGGGCAC
20749012 CATCGTCGGAG
1 CATCGTCGGAG
20749023 CATCGTCGGAG
1 CATCGTCGGAG
20749034 CATCGTCGGAG
1 CATCGTCGGAG
20749045 AACCTGACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20750709 original size:26 final size:26
Alignment explanation
Indices: 20750673--20750725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20750663 GTCGACTTAG
20750673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20750699 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20750725 G
1 G
20750726 ATCGGATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20751605 original size:26 final size:26
Alignment explanation
Indices: 20751569--20751621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20751559 GTTCACTTAG
20751569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20751595 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20751621 G
1 G
20751622 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20752076 original size:11 final size:11
Alignment explanation
Indices: 20752060--20752088 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
20752050 TCTGAGTTTT
20752060 TTCATCGAAAG
1 TTCATCGAAAG
20752071 TTCATCGAAAG
1 TTCATCGAAAG
20752082 TTCATCG
1 TTCATCG
20752089 GAAGGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (11 bp):
TTCATCGAAAG
Found at i:20752658 original size:17 final size:17
Alignment explanation
Indices: 20752630--20752771 Score: 77
Period size: 17 Copynumber: 8.3 Consensus size: 17
20752620 TTACAAGAAA
20752630 AATAAT-AATAAATAAT
1 AATAATAAATAAATAAT
*
20752646 AATAATAAATAAATTAT
1 AATAATAAATAAATAAT
*
20752663 AAT-ATATAATAAATATAG
1 AATAATA-AATAAATA-AT
20752681 AACTATATAAAT-AA-AAT
1 AA-TA-ATAAATAAATAAT
*
20752698 ACAT-ATAAATATTAACAGA-
1 A-ATAATAAATA--AATA-AT
20752717 AA-AATAAATAAATAAAT
1 AATAATAAATAAAT-AAT
* *
20752734 AA-AATAAATAAGTAAA
1 AATAATAAATAAATAAT
*
20752750 AAT-ATACATATAATAAT
1 AATAATAAATA-AATAAT
20752767 AATAA
1 AATAA
20752772 ATCATAAAAT
Statistics
Matches: 98, Mismatches: 10, Indels: 34
0.69 0.07 0.24
Matches are distributed among these distances:
15 6 0.06
16 22 0.22
17 42 0.43
18 16 0.16
19 5 0.05
20 4 0.04
21 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (17 bp):
AATAATAAATAAATAAT
Found at i:20752998 original size:1 final size:1
Alignment explanation
Indices: 20752988--20753040 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
20752978 ACATTGTCAA
* * ** * *
20752988 TTTTTATTTTTTTTTTGTTTTTTGGTTTTTGTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
20753041 ACCGAAGCTC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:20753040 original size:7 final size:7
Alignment explanation
Indices: 20752994--20753037 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
20752984 TCAATTTTTA
20752994 TTTT-TT
1 TTTTGTT
20753000 TTTTGTT
1 TTTTGTT
*
20753007 TTTTGGT
1 TTTTGTT
20753014 TTTTGTT
1 TTTTGTT
20753021 TTTTGTT
1 TTTTGTT
20753028 TTTT-TT
1 TTTTGTT
20753034 TTTT
1 TTTT
20753038 TTTACCGAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 10 0.29
7 25 0.71
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (7 bp):
TTTTGTT
Found at i:20753183 original size:41 final size:41
Alignment explanation
Indices: 20753047--20753206 Score: 230
Period size: 41 Copynumber: 3.8 Consensus size: 41
20753037 TTTTACCGAA
* *
20753047 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATT
* * * *
20753090 GCTCCTCTAAACAGAGGTAGCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
*
20753132 GCTCCTCTAAACAGAGGGACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
20753173 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAA
20753207 TAATTGACTT
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
41 46 0.44
42 30 0.29
43 25 0.24
44 4 0.04
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
Found at i:20753197 original size:83 final size:85
Alignment explanation
Indices: 20753047--20753201 Score: 251
Period size: 83 Copynumber: 1.8 Consensus size: 85
20753037 TTTTACCGAA
* * *
20753047 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGTAGCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
20753112 CGACTTTTGGAAAGTAAATT
66 CGACTTTTGGAAAGTAAATT
* *
20753132 GCTCCTCTAAACAGAGGGACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
20753195 CGACTTT
66 CGACTTT
20753202 GAAAATAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
83 34 0.52
84 3 0.05
85 28 0.43
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (85 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
CGACTTTTGGAAAGTAAATT
Found at i:20753292 original size:97 final size:98
Alignment explanation
Indices: 20753121--20753303 Score: 298
Period size: 97 Copynumber: 1.9 Consensus size: 98
20753111 ACGACTTTTG
* *
20753121 GAAAGTAAATTGCTCCTCTAAACAGAGGGACCACGACTTTGAAAAATAAATTGCTCCTCTAAACA
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACA
20753186 GAGGCACCACGACTTT-GAAAATAATTGACTTT
66 GAGGCACCACGACTTTAGAAAATAATTGACTTT
* * *
20753218 GAAAATAAATTGCTCCTCT-AACAGAGGCACTACGACTTTTGGAAAGTAAATTGCTCCTCTAAAC
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATTGCTCCTCTAAAC
20753282 AGAGGCACCACGACTTTAGAAA
65 AGAGGCACCACGACTTTAGAAA
20753304 TAAATTGCTC
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
96 15 0.19
97 60 0.76
98 4 0.05
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (98 bp):
GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACA
GAGGCACCACGACTTTAGAAAATAATTGACTTT
Found at i:20753295 original size:42 final size:42
Alignment explanation
Indices: 20753218--20753355 Score: 219
Period size: 41 Copynumber: 3.4 Consensus size: 42
20753208 AATTGACTTT
* *
20753218 GAAAATAAATTGCTCCTCT-AACAGAGGCACTACGACTTTTG
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG
*
20753259 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTA
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG
*
20753300 GAAA-TAAATTGCTCCTCTAAACAGAGGCACCACGATTTTTG
1 GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG
20753341 GAAAGTAAATTGCTC
1 GAAAGTAAATTGCTC
20753356 TTTTACAATC
Statistics
Matches: 89, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
40 31 0.35
41 32 0.36
42 26 0.29
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (42 bp):
GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTG
Found at i:20753319 original size:40 final size:41
Alignment explanation
Indices: 20753212--20753355 Score: 213
Period size: 40 Copynumber: 3.5 Consensus size: 41
20753202 GAAAATAATT
* *
20753212 GACTTT-GAAAATAAATTGCTCCTCT-AACAGAGGCACTAC
1 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
20753251 GACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
20753293 GACTTTAGAAA-TAAATTGCTCCTCTAAACAGAGGCACCAC
1 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
20753333 GATTTTTGGAAAGTAAATTGCTC
1 GA-CTTTGGAAAGTAAATTGCTC
20753356 TTTTACAATC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
39 3 0.03
40 34 0.36
41 32 0.34
42 26 0.27
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (41 bp):
GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
Found at i:20754643 original size:7 final size:6
Alignment explanation
Indices: 20754608--20754659 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
20754598 GAATCTCTTG
* * *
20754608 TTTTTC ATTTTC TCATTTC TTTTTC TTTTGC TTTTTC -TTTT- TTTTTC
1 TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
20754655 TTTTT
1 TTTTT
20754660 TCATCATCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 8 0.22
6 24 0.65
7 5 0.14
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:20754658 original size:9 final size:10
Alignment explanation
Indices: 20754627--20754660 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
20754617 TTCTCATTTC
20754627 TTTTTCTTTT
1 TTTTTCTTTT
20754637 GCTTTTTCTTTT
1 --TTTTTCTTTT
20754649 TTTTTCTTTT
1 TTTTTCTTTT
20754659 TT
1 TT
20754661 CATCATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
12 10 0.45
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:20758768 original size:111 final size:113
Alignment explanation
Indices: 20758559--20758787 Score: 338
Period size: 111 Copynumber: 2.0 Consensus size: 113
20758549 CTTGTGTAGG
**
20758559 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAAATTTATTTTTAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAAATTTATTTCCAAGGAAAA
20758624 TTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
* *
20758673 GAAAATTGATACTTTCAACTTTT-CTCAAAAATA-TTTTTTG-AAACTTTGATTTCCAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAAATTT-ATTTCCAAGGAAAA
20758735 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTTA
65 TTGATACTTTCAACTTTTCCC-AAAAATA-TTTTTT-GAAA-TTT-ATTTTTA
20758788 TTTAAAGAAA
Statistics
Matches: 105, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
110 6 0.06
111 40 0.38
112 7 0.07
113 15 0.14
114 27 0.26
115 3 0.03
116 7 0.07
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (113 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAAATTTATTTCCAAGGAAAAT
TGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
Found at i:20758814 original size:14 final size:14
Alignment explanation
Indices: 20758795--20758852 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
20758785 TTATTTAAAG
*
20758795 AAAATAGAATAATA
1 AAAATAGAAAAATA
20758809 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
20758823 AAGAAAAGTAAAAGA
1 AA-AATAGAAAAATA
20758838 AAAAT--AAAAATA
1 AAAATAGAAAAATA
20758850 AAA
1 AAA
20758853 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:20758822 original size:17 final size:17
Alignment explanation
Indices: 20758800--20758852 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
20758790 TAAAGAAAAT
20758800 AGAATAATAAAAATAGAA
1 AGAATAATAAAAATA-AA
20758818 A-AATAA-AGAAAAGTAAA
1 AGAATAATA-AAAA-TAAA
*
20758835 AGAAAAATAAAAATAAA
1 AGAATAATAAAAATAAA
20758852 A
1 A
20758853 TTAAGATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
16 1 0.03
17 17 0.57
18 11 0.37
19 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.13
Consensus pattern (17 bp):
AGAATAATAAAAATAAA
Found at i:20758838 original size:11 final size:11
Alignment explanation
Indices: 20758814--20758846 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
20758804 TAATAAAAAT
20758814 AGAAAAAT-AA
1 AGAAAAATAAA
*
20758824 AGAAAAGTAAA
1 AGAAAAATAAA
20758835 AGAAAAATAAA
1 AGAAAAATAAA
20758846 A
1 A
20758847 ATAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (11 bp):
AGAAAAATAAA
Found at i:20758861 original size:17 final size:16
Alignment explanation
Indices: 20758839--20758878 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
20758829 AGTAAAAGAA
*
20758839 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
20758855 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
20758872 AAATAAA
1 AAATAAA
20758879 CCTAATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:20759302 original size:20 final size:20
Alignment explanation
Indices: 20759274--20759318 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
20759264 GAAGATTCAC
*
20759274 CGGATTCTGGGTTTTGTCAT
1 CGGAATCTGGGTTTTGTCAT
* *
20759294 CGGAATCTGGGTTTTTTCGT
1 CGGAATCTGGGTTTTGTCAT
20759314 CGGAA
1 CGGAA
20759319 GTTCTCGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.16, G:0.31, T:0.40
Consensus pattern (20 bp):
CGGAATCTGGGTTTTGTCAT
Found at i:20759934 original size:16 final size:16
Alignment explanation
Indices: 20759915--20760065 Score: 71
Period size: 17 Copynumber: 8.8 Consensus size: 16
20759905 TTACAAGAAA
20759915 AATAATAATAAATAAT
1 AATAATAATAAATAAT
*
20759931 AATAATAAATAAATTAT
1 AATAAT-AATAAATAAT
20759948 AATATATAATAAAT-AT
1 AATA-ATAATAAATAAT
*
20759964 AGA-ACTATATAAATAA-
1 A-ATAATA-ATAAATAAT
20759980 AATACAT-ATAAACATTAAT
1 AATA-ATAAT-AA-A-TAAT
*
20759999 AGAAAAATAAATAAATAAAT
1 --AATAAT-AATAAAT-AAT
*
20760019 AAATAAGTAA-AAATATAC
1 -AATAA-TAATAAATA-AT
20760037 ATATAATAATAAATAAT
1 A-ATAATAATAAATAAT
20760054 AA-AATACATAAA
1 AATAATA-ATAAA
20760066 ATACAAAAGA
Statistics
Matches: 106, Mismatches: 8, Indels: 42
0.68 0.05 0.27
Matches are distributed among these distances:
15 9 0.08
16 26 0.25
17 31 0.29
18 19 0.18
19 7 0.07
20 7 0.07
21 5 0.05
22 2 0.02
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (16 bp):
AATAATAATAAATAAT
Found at i:20759941 original size:4 final size:4
Alignment explanation
Indices: 20759921--20760056 Score: 56
Period size: 4 Copynumber: 34.5 Consensus size: 4
20759911 GAAAAATAAT
* * *
20759921 AATA AAT- AAT- AAT- AATA AATA AAT- TATA ATATA TAATA AATA TAGA
1 AATA AATA AATA AATA AATA AATA AATA AATA A-ATA -AATA AATA AATA
* * * * *
20759967 ACTA TATA AATAA AATA CATA TAA-A CATT AATA GAA-A AATA AATA AATA
1 AATA AATA AAT-A AATA AATA -AATA AATA AATA -AATA AATA AATA AATA
* *
20760016 AATA AATA AGTA AA-A ATATA CATA TAAT- AATA AAT- AATA AA
1 AATA AATA AATA AATA A-ATA AATA -AATA AATA AATA AATA AA
20760057 ATACATAAAA
Statistics
Matches: 98, Mismatches: 20, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
3 22 0.22
4 59 0.60
5 16 0.16
6 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (4 bp):
AATA
Found at i:20759949 original size:24 final size:24
Alignment explanation
Indices: 20759914--20760065 Score: 81
Period size: 24 Copynumber: 6.3 Consensus size: 24
20759904 ATTACAAGAA
20759914 AAAT-AATAATAAATAATAATAAT
1 AAATAAATAATAAATAATAATAAT
*
20759937 AAATAAATTAT-AATATATAATAA-
1 AAATAAATAATAAATA-ATAATAAT
*
20759960 ATATAGAACTATATAAATAA-AATACAT
1 AAATA-AA-TA-ATAAATAATAATA-AT
* *
20759987 --ATAAA-CATTAATAGA-AA-AAT
1 AAATAAATAATAAATA-ATAATAAT
*
20760007 AAATAAATAAATAAATAAGTAAAAAT
1 AAATAAAT-AATAAATAA-TAATAAT
20760033 ATACATATAATAATAAATAATAA-AAT
1 A-A-ATA-AATAATAAATAATAATAAT
*
20760059 ACATAAA
1 AAATAAA
20760066 ATACAAAAGA
Statistics
Matches: 102, Mismatches: 8, Indels: 38
0.69 0.05 0.26
Matches are distributed among these distances:
20 2 0.02
21 7 0.07
22 8 0.08
23 15 0.15
24 25 0.25
25 10 0.10
26 12 0.12
27 8 0.08
28 12 0.12
29 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (24 bp):
AAATAAATAATAAATAATAATAAT
Found at i:20760957 original size:26 final size:26
Alignment explanation
Indices: 20760921--20760973 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20760911 GTTGACTTAG
20760921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20760947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20760973 G
1 G
20760974 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20761852 original size:26 final size:26
Alignment explanation
Indices: 20761823--20761875 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20761813 GTTGACTTAG
* *
20761823 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20761849 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20761875 G
1 G
20761876 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20762753 original size:24 final size:26
Alignment explanation
Indices: 20762713--20762763 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
20762703 GTTGACTTAG
* *
20762713 GCATACAGAGTTGATTC-CAGTTTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20762738 GCATAC-GAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20762763 G
1 G
20762764 ATCGGACCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20764510 original size:26 final size:26
Alignment explanation
Indices: 20764481--20764533 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20764471 GTTGACTTAG
* * **
20764481 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
20764507 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
20764533 G
1 G
20764534 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Done.