Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 19 of 117
Found at i:5546381 original size:24 final size:25
Alignment explanation
Indices: 5546335--5546396 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 25
5546325 ATTCATTTAT
*
5546335 AAATATTAAATAAAAATATTTATGA
1 AAATATTAAATAAAAATACTTATGA
* * *
5546360 AAATA-TATATAAATATACTTATAA
1 AAATATTAAATAAAAATACTTATGA
5546384 ATAATAATTAAAT
1 A-AAT-ATTAAAT
5546397 GAATTTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 16 0.55
25 8 0.28
26 1 0.03
27 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATATTAAATAAAAATACTTATGA
Found at i:5546406 original size:21 final size:21
Alignment explanation
Indices: 5546381--5546442 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
5546371 AATATACTTA
*
5546381 TAAATAATAATTAAATGAAT-T
1 TAAATAA-AATTAAATAAATCT
*
5546402 TAAATAAAAATAAATAAATCT
1 TAAATAAAATTAAATAAATCT
5546423 TAAAATAAAATTAAAATAAA
1 T-AAATAAAATT-AAATAAA
5546443 AATAAAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.29
21 9 0.26
22 9 0.26
23 7 0.20
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAATAAAATTAAATAAATCT
Found at i:5546436 original size:11 final size:11
Alignment explanation
Indices: 5546398--5546449 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
5546388 TAATTAAATG
*
5546398 AATTTAAATAA
1 AATTAAAATAA
*
5546409 AAAT-AAATAA
1 AATTAAAATAA
*
5546419 ATCTTAAAATAA
1 A-ATTAAAATAA
5546431 AATTAAAATAA
1 AATTAAAATAA
*
5546442 AAATAAAA
1 AATTAAAA
5546450 ATATATATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 7 0.21
11 20 0.59
12 7 0.21
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (11 bp):
AATTAAAATAA
Found at i:5546472 original size:41 final size:40
Alignment explanation
Indices: 5546403--5546490 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 40
5546393 AAATGAATTT
* *
5546403 AAATAAAAATAAATAAATCTTAAAATAAAATTAA-AA-TAA
1 AAATAAAAATAAATAAATATTAAAAT-AAATGAATAATTAA
**
5546442 AAATAAAAATATATATAAATATTATTATAAATGAATAATTAA
1 AAATAAAAATA-A-ATAAATATTAAAATAAATGAATAATTAA
5546484 AAATAAA
1 AAATAAA
5546491 TTTTAAACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
39 11 0.27
40 7 0.17
41 13 0.32
42 10 0.24
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (40 bp):
AAATAAAAATAAATAAATATTAAAATAAATGAATAATTAA
Found at i:5546991 original size:5 final size:5
Alignment explanation
Indices: 5546981--5547010 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
5546971 AAAAGGAAAT
5546981 ATAAA ATAAA ATAAA ATAAA ATAAA TATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA -ATAA
5547011 TTATGTAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:5550748 original size:27 final size:26
Alignment explanation
Indices: 5550718--5550784 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
5550708 ATAAAATAAG
5550718 ATAATATTATTTACTTTAATTTTATT
1 ATAATATTATTTACTTTAATTTTATT
*
5550744 CATAATATTATTTTA-TTTTATTTTATT
1 -ATAATATTA-TTTACTTTAATTTTATT
* *
5550771 ATAATTTTGTTTAC
1 ATAATATTATTTAC
5550785 CTAATATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 4 0.11
26 7 0.20
27 20 0.57
28 4 0.11
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (26 bp):
ATAATATTATTTACTTTAATTTTATT
Found at i:5559219 original size:83 final size:83
Alignment explanation
Indices: 5559061--5559292 Score: 215
Period size: 83 Copynumber: 2.8 Consensus size: 83
5559051 ATCATTTTAT
* * * * *
5559061 TAAAA-ATAAAAATGATTATTTAAGGCATTTTATGTAACAAATAC-C-TTAAATAATC-TCTTAT
1 TAAAATATAAAAAT-ACTATTTAAGACATTTTCTAT-ACAAA-ACACATTAAATAATCATTTTAT
*
5559122 AAAAATAAAAACCCTAAA-TCC
63 AAAAAGAAAAACCCTAAACT-C
* **
5559143 TAAAATATAAATA-ACTATTTAAGACATTTTCTATATGGAAACACATTAAATAATCATTTTATAA
1 TAAAATATAAAAATACTATTTAAGACATTTTCTATA-CAAAACACATTAAATAATCATTTTATAA
** *
5559207 AAAGATTAACCCTAAACTT
65 AAAGAAAAACCCTAAACTC
* * ** * *
5559226 TAAAATATAAAAATATTATTTAAGACGTTTTCTATACAAAATGCTTTAAATAATCAATTTATAAA
1 TAAAATATAAAAATACTATTTAAGACATTTTCTATACAAAACACATTAAATAATCATTTTATAAA
5559291 AA
66 AA
5559293 TATAAAATGA
Statistics
Matches: 122, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
80 3 0.02
81 20 0.16
82 15 0.12
83 63 0.52
84 21 0.17
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (83 bp):
TAAAATATAAAAATACTATTTAAGACATTTTCTATACAAAACACATTAAATAATCATTTTATAAA
AAGAAAAACCCTAAACTC
Found at i:5560994 original size:3 final size:3
Alignment explanation
Indices: 5560980--5561010 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
5560970 CTAAACCAAA
*
5560980 AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
5561011 TATGATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:5562770 original size:2 final size:2
Alignment explanation
Indices: 5562765--5562790 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5562755 ACACACACAC
5562765 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
5562791 GTGTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5563132 original size:27 final size:27
Alignment explanation
Indices: 5563095--5563161 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
5563085 TTTTAATTTG
5563095 AATTTAAATAATTATCCAAACACATTA
1 AATTTAAATAATTATCCAAACACATTA
* *
5563122 AATTTACATAATTATCCAAACATATTA
1 AATTTAAATAATTATCCAAACACATTA
5563149 AATTTAAATAATT
1 AATTTAAATAATT
5563162 TATTAAATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (27 bp):
AATTTAAATAATTATCCAAACACATTA
Found at i:5563284 original size:5 final size:5
Alignment explanation
Indices: 5563274--5563303 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
5563264 AGTAATTTTG
5563274 TATAA TATAA TATAA TATAA TATATA TATA
1 TATAA TATAA TATAA TATAA TATA-A TATA
5563304 TTAAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:5564314 original size:2 final size:2
Alignment explanation
Indices: 5564307--5564332 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5564297 TTACAGCTTC
5564307 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
5564333 TTGTGTCGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5574418 original size:29 final size:29
Alignment explanation
Indices: 5574358--5574420 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
5574348 CCATTTATTT
* * *
5574358 AAATAAATTTTTATATTTTTATCTCATTC
1 AAATAAATTTTTATAATTTAATCTCATCC
*
5574387 AAATAAATTTTT-TAATTTAATTTACATCC
1 AAATAAATTTTTATAATTTAATCT-CATCC
5574416 AAATA
1 AAATA
5574421 TATCATTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (29 bp):
AAATAAATTTTTATAATTTAATCTCATCC
Found at i:5574457 original size:22 final size:23
Alignment explanation
Indices: 5574432--5574489 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
5574422 ATCATTATCC
5574432 TTTAATTTAAATTTAAATAAAT-
1 TTTAATTTAAATTTAAATAAATA
*
5574454 TTTAATTTATAA-CTAAATAAATA
1 TTTAATTTA-AATTTAAATAAATA
*
5574477 TTTAATATAAATT
1 TTTAATTTAAATT
5574490 AATTTCTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 20 0.67
23 10 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTAATTTAAATTTAAATAAATA
Found at i:5577315 original size:16 final size:17
Alignment explanation
Indices: 5577289--5577321 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
5577279 TATAATGAAT
5577289 TGGTAAAAAAAAAGTGA
1 TGGTAAAAAAAAAGTGA
5577306 TGGT-AAAAAAAAGTGA
1 TGGTAAAAAAAAAGTGA
5577322 AATGAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (17 bp):
TGGTAAAAAAAAAGTGA
Found at i:5578630 original size:22 final size:22
Alignment explanation
Indices: 5578600--5578650 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
5578590 GAAAATTTTG
* * *
5578600 TTGATAAATTATATTTTTTATT
1 TTGAAAAATTATACTTTTAATT
5578622 TTGAAAAATTATACTTTTAATT
1 TTGAAAAATTATACTTTTAATT
5578644 TATGAAA
1 T-TGAAA
5578651 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (22 bp):
TTGAAAAATTATACTTTTAATT
Found at i:5591491 original size:23 final size:23
Alignment explanation
Indices: 5591444--5591487 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
5591434 CATTTTCTTT
*
5591444 AAAATTATTTAATAAATATTTTA
1 AAAATTATTAAATAAATATTTTA
*
5591467 AAAATTA-TAAATATATATTTT
1 AAAATTATTAAATAAATATTTT
5591488 TAAAGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
AAAATTATTAAATAAATATTTTA
Found at i:5599648 original size:107 final size:108
Alignment explanation
Indices: 5599527--5599734 Score: 328
Period size: 109 Copynumber: 1.9 Consensus size: 108
5599517 ACATGTGTTG
* * *
5599527 CTTTATTAACCTTGTAAAGTTAAAAAAAAA-ATCATTCTCAAATTAAAAGTAATATATCAATAAA
1 CTTTATTAAACTTGTAAAGTTAAAAAAAAATATCATTCTCAAATTAAAAATAATAGATCAATAAA
*
5599591 TTTTTATTCTCATTTAAGGCACTTATAAAATAAGTTCAAATTA
66 ATTTTATTCTCATTTAAGGCACTTATAAAATAAGTTCAAATTA
* *
5599634 CTTTATTAAACTTGTAAAGTTAAAAAAAAATTTTCATTCTCAAATTAAAAATAATAGATGAATAA
1 CTTTATTAAACTTGTAAAGTTAAAAAAAAA-TATCATTCTCAAATTAAAAATAATAGATCAATAA
* *
5599699 AATTTTATTCTCGTTTAAGTCACTTATAAAATAAGT
65 AATTTTATTCTCATTTAAGGCACTTATAAAATAAGT
5599735 GTAAAAAGAT
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
107 29 0.32
109 62 0.68
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (108 bp):
CTTTATTAAACTTGTAAAGTTAAAAAAAAATATCATTCTCAAATTAAAAATAATAGATCAATAAA
ATTTTATTCTCATTTAAGGCACTTATAAAATAAGTTCAAATTA
Found at i:5602816 original size:14 final size:15
Alignment explanation
Indices: 5602797--5602825 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5602787 TTTCAATATA
5602797 TCAATTTT-GTTTTT
1 TCAATTTTAGTTTTT
5602811 TCAATTTTAGTTTTT
1 TCAATTTTAGTTTTT
5602826 ATTGAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.69
Consensus pattern (15 bp):
TCAATTTTAGTTTTT
Found at i:5604298 original size:52 final size:52
Alignment explanation
Indices: 5604242--5604396 Score: 154
Period size: 52 Copynumber: 2.9 Consensus size: 52
5604232 TAAATTCTAG
*
5604242 TATTAAATTAAAATAATCTAATATACTAATATAAACAAATAAAAAATTA-AT-A
1 TATTAAATTAAAATAATCTAATA-AATAATATAAACAAATAAAAAA-TAGATCA
* * *
5604294 TATTAAATTAAAATAATATAATAAATTAATGTAAATATATATAAAAAA-AGATGCA
1 TATTAAATTAAAATAATCTAATAAA-TAATATAAACA-A-ATAAAAAATAGAT-CA
* * * *
5604349 TATTAAATTAAAACAATCTAACAAATCAATATAATCTAATAAAAAATA
1 TATTAAATTAAAATAATCTAATAAAT-AATATAAACAAATAAAAAATA
5604397 AAAAAAAACA
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
51 1 0.01
52 32 0.38
53 11 0.13
54 11 0.13
55 29 0.35
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.32
Consensus pattern (52 bp):
TATTAAATTAAAATAATCTAATAAATAATATAAACAAATAAAAAATAGATCA
Found at i:5604312 original size:18 final size:19
Alignment explanation
Indices: 5604284--5604322 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
5604274 AAACAAATAA
*
5604284 AAAATTAATATATTAAATT
1 AAAATTAATATAATAAATT
5604303 AAAA-TAATATAATAAATT
1 AAAATTAATATAATAAATT
5604321 AA
1 AA
5604323 TGTAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTAATATAATAAATT
Found at i:5604328 original size:23 final size:23
Alignment explanation
Indices: 5604281--5604322 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
5604271 TATAAACAAA
*
5604281 TAAAA-AAT-TAATATATTAAAT
1 TAAAATAATATAATAAATTAAAT
5604302 TAAAATAATATAATAAATTAA
1 TAAAATAATATAATAAATTAA
5604323 TGTAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAAATAATATAATAAATTAAAT
Found at i:5611331 original size:62 final size:59
Alignment explanation
Indices: 5611259--5611533 Score: 255
Period size: 62 Copynumber: 4.5 Consensus size: 59
5611249 CAGCAATTGA
*
5611259 TCATTATAATTTATTTAAAATAATCAAATATTGTAATTTTTAAAAATAAACATAATAATTAT
1 TCATTATAATTT-TTTAAAATAATCAATTA-T-TAATTTTTAAAAATAAACATAATAATTAT
* * * * ** ** *
5611321 TTATTGTAATTTTTTGAAATAATCAATTATTGAAGTTATTTGATCATAAATGTAATAATTAC
1 TCATTATAATTTTTTAAAATAATCAATTATT-AA-TT-TTTAAAAATAAACATAATAATTAT
* * * * *
5611383 ACATTATAATTTTATTAAAATAATCAATTATTATTTTATTTAAAA-AAACGTAATAATTGT
1 TCATTATAATTTT-TTAAAATAATCAATTATTAATTT-TTAAAAATAAACATAATAATTAT
* * *
5611443 TCATTATAATTTTTTTAAATAATCAATTATTACCTTTTTAAAATATAAACACAATAATTAT
1 TCATTATAATTTTTTAAAATAATCAATTATTA-ATTTTTAAAA-ATAAACATAATAATTAT
* * *
5611504 ACATTATAATTATTTTAAATTAATTAATTA
1 TCATTATAATT-TTTTAAAATAATCAATTA
5611534 ATGCATGTTT
Statistics
Matches: 172, Mismatches: 32, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
59 24 0.14
60 32 0.19
61 45 0.26
62 54 0.31
63 17 0.10
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (59 bp):
TCATTATAATTTTTTAAAATAATCAATTATTAATTTTTAAAAATAAACATAATAATTAT
Found at i:5611522 original size:121 final size:123
Alignment explanation
Indices: 5611260--5611533 Score: 299
Period size: 122 Copynumber: 2.2 Consensus size: 123
5611250 AGCAATTGAT
* *
5611260 CATTATAATTTATTTAAAATAATCAAATATTGTAATTTTTAAAAATAAACATAATAATTATTTAT
1 CATTATAATTT-TTTAAAATAATCAATTATTGTAATTTTTAAAAATAAACATAATAATTATTCAT
* * * ***
5611325 TGTAATTTTTTGAAATAATCAATTATTGAAGTTATTTGATCATAAATGTAATAATTACA
65 TATAATTTTTTGAAATAATCAATTATTGAACTTATTTAATCATAAACACAATAATTACA
* * * *
5611384 CATTATAATTTTATTAAAATAATCAATTA-T-TATTTTATTTAAAA-AAACGTAATAATTGTTCA
1 CATTATAATTTT-TTAAAATAATCAATTATTGTAATTT-TTAAAAATAAACATAATAATTATTCA
* * *
5611446 TTATAATTTTTTTAAATAATCAATTATT-ACCTT-TTTAAAAT-ATAAACACAATAATTATA
64 TTATAATTTTTTGAAATAATCAATTATTGAACTTATTT--AATCATAAACACAATAATTACA
* *
5611505 CATTATAATTATTTTAAATTAATTAATTA
1 CATTATAATT-TTTTAAAATAATCAATTA
5611534 ATGCATGTTT
Statistics
Matches: 128, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
120 3 0.02
121 41 0.32
122 50 0.39
123 8 0.06
124 26 0.20
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (123 bp):
CATTATAATTTTTTAAAATAATCAATTATTGTAATTTTTAAAAATAAACATAATAATTATTCATT
ATAATTTTTTGAAATAATCAATTATTGAACTTATTTAATCATAAACACAATAATTACA
Found at i:5621048 original size:50 final size:51
Alignment explanation
Indices: 5620973--5621074 Score: 197
Period size: 50 Copynumber: 2.0 Consensus size: 51
5620963 GCAAAAAACA
5620973 TTACAAACGTCAAGATTAGAGCTTTTGCTTTAA-GGGGTTCTAAGAAGTTT
1 TTACAAACGTCAAGATTAGAGCTTTTGCTTTAAGGGGGTTCTAAGAAGTTT
5621023 TTACAAACGTCAAGATTAGAGCTTTTGCTTTAAGGGGGTTCTAAGAAGTTT
1 TTACAAACGTCAAGATTAGAGCTTTTGCTTTAAGGGGGTTCTAAGAAGTTT
5621074 T
1 T
5621075 AGGCTAGGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 33 0.65
51 18 0.35
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (51 bp):
TTACAAACGTCAAGATTAGAGCTTTTGCTTTAAGGGGGTTCTAAGAAGTTT
Found at i:5622584 original size:24 final size:24
Alignment explanation
Indices: 5622555--5622602 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
5622545 GTTTCAATAT
**
5622555 ATTTTTTAAATAAAATTAAAAAAAC
1 ATTTTTTAAA-AAAAGAAAAAAAAC
5622580 ATTTTTTAAAAAAAGAAAAAAAA
1 ATTTTTTAAAAAAAGAAAAAAAA
5622603 GAAATTTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
ATTTTTTAAAAAAAGAAAAAAAAC
Found at i:5622609 original size:26 final size:24
Alignment explanation
Indices: 5622555--5622622 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
5622545 GTTTCAATAT
** *
5622555 ATTTTTTAAATAAAATTAAAAAAAC
1 ATTTTTTAAA-AAAAAAAAAAAAAA
5622580 ATTTTTTAAAAAAAGAAAAAAAAGAA
1 ATTTTTTAAAAAAA-AAAAAAAA-AA
**
5622606 ATTTCGTAAAAAAAAAA
1 ATTTTTTAAAAAAAAAA
5622623 GGAAATGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.11
25 19 0.53
26 13 0.36
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (24 bp):
ATTTTTTAAAAAAAAAAAAAAAAA
Found at i:5632809 original size:26 final size:29
Alignment explanation
Indices: 5632788--5632841 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
5632778 ATTTATTTCA
5632788 TAATAAA-ATA-TAATTAAATTATTAAAT
1 TAATAAATATATTAATTAAATTATTAAAT
5632815 TAATAAATATATTAATT-AATTAATTAA
1 TAATAAATATATTAATTAAATT-ATTAA
5632842 TTTTTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 7 0.29
28 7 0.29
29 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TAATAAATATATTAATTAAATTATTAAAT
Found at i:5632831 original size:16 final size:16
Alignment explanation
Indices: 5632802--5632840 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
5632792 AAAATATAAT
5632802 TAAATTATTAAATTAA
1 TAAATTATTAAATTAA
5632818 TAAATATATT-AATTAA
1 TAAAT-TATTAAATTAA
*
5632834 TTAATTA
1 TAAATTA
5632841 ATTTTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 15 0.71
17 4 0.19
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAATTATTAAATTAA
Found at i:5638024 original size:103 final size:99
Alignment explanation
Indices: 5637884--5638074 Score: 238
Period size: 103 Copynumber: 1.9 Consensus size: 99
5637874 TATCGCATTG
** * * *
5637884 ATTAAAGTTATCCCTTGAAAAATTAAAGGCTGGTTTATGGACAATTAATATTTGTCTTAAATTTT
1 ATTAAAGTTATCCCTTGAAAAATTAAAGGCTAATTTATGGAAAACTAATA----TCTTAAACTTT
** * *
5637949 GATGTGAGGGTTAAATTAGATATAAAACTATACAATAA
62 GATGACAGAGTTAAATTAGACATAAAACTATACAATAA
* * *
5637987 ATTAAAGTTATTCCTTGAAAAATTAAGGGTTAATTTATGGAAAACTAATATCTTAAACTTTGATG
1 ATTAAAGTTATCCCTTGAAAAATTAAAGGCTAATTTATGGAAAACTAATATCTTAAACTTTGATG
5638052 ACAGAGTTAAATTAGACATAAAA
66 ACAGAGTTAAATTAGACATAAAA
5638075 TTAAATAATC
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
99 33 0.43
103 43 0.57
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (99 bp):
ATTAAAGTTATCCCTTGAAAAATTAAAGGCTAATTTATGGAAAACTAATATCTTAAACTTTGATG
ACAGAGTTAAATTAGACATAAAACTATACAATAA
Found at i:5638402 original size:12 final size:12
Alignment explanation
Indices: 5638385--5638409 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5638375 ACATAATTAA
5638385 ACATATATACAT
1 ACATATATACAT
5638397 ACATATATACAT
1 ACATATATACAT
5638409 A
1 A
5638410 TAAATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
ACATATATACAT
Found at i:5639512 original size:21 final size:21
Alignment explanation
Indices: 5639470--5639512 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
5639460 CTTTTGATTG
* * *
5639470 CTTCATGTGATGTCTTTCCTA
1 CTTCATATGATATATTTCCTA
*
5639491 CTTCATATGATATATTTTCTA
1 CTTCATATGATATATTTCCTA
5639512 C
1 C
5639513 CATAATTATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (21 bp):
CTTCATATGATATATTTCCTA
Found at i:5641029 original size:20 final size:22
Alignment explanation
Indices: 5640987--5641032 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
5640977 TTTTATAGAG
*
5640987 TATTTTAATATGATTTTAAATA
1 TATTTAAATATGATTTTAAATA
*
5641009 TATTTAAATA-GATTTATATATA
1 TATTTAAATATGATTT-TAAATA
5641031 TA
1 TA
5641033 ATTATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
TATTTAAATATGATTTTAAATA
Found at i:5641071 original size:18 final size:18
Alignment explanation
Indices: 5641048--5641082 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5641038 TTTTATTTTA
*
5641048 TAAAAATTAAAAAAAATG
1 TAAAAACTAAAAAAAATG
*
5641066 TAAAAACTAATAAAAAT
1 TAAAAACTAAAAAAAAT
5641083 ATATAATTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (18 bp):
TAAAAACTAAAAAAAATG
Found at i:5642082 original size:6 final size:6
Alignment explanation
Indices: 5642063--5642106 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
5642053 TTTTCAAGTC
* *
5642063 TGATTT TGGATTT TGATTT TGATTT TAATTG TGATTT T-ATTT TG
1 TGATTT T-GATTT TGATTT TGATTT TGATTT TGATTT TGATTT TG
5642107 GTCAACAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 5 0.16
6 21 0.66
7 6 0.19
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (6 bp):
TGATTT
Found at i:5643122 original size:15 final size:15
Alignment explanation
Indices: 5643102--5643131 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5643092 GTTTTTATTA
5643102 ATTTTTCAAAAAAAT
1 ATTTTTCAAAAAAAT
*
5643117 ATTTTTCAAATAAAT
1 ATTTTTCAAAAAAAT
5643132 TCATGAATCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTTTTCAAAAAAAT
Found at i:5648916 original size:27 final size:25
Alignment explanation
Indices: 5648866--5648922 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
5648856 TCCTCGGAGA
5648866 TTTTTATTTTATTATTATTTATTTT
1 TTTTTATTTTATTATTATTTATTTT
* **
5648891 TTTTTTTTTTA-TATTATTTATCAT
1 TTTTTATTTTATTATTATTTATTTT
5648915 TTTTTATT
1 TTTTTATT
5648923 ATTGTTTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 18 0.64
25 10 0.36
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTTATTTTATTATTATTTATTTT
Found at i:5648937 original size:20 final size:19
Alignment explanation
Indices: 5648895--5648944 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
5648885 TATTTTTTTT
5648895 TTTTTTATATTATTTATCA
1 TTTTTTATATTATTTATCA
*
5648914 TTTTTTATTATTGTTTA-CA
1 TTTTTTA-TATTATTTATCA
*
5648933 CTTTTTCATATT
1 -TTTTTTATATT
5648945 TGCTCTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTTATATTATTTATCA
Found at i:5650759 original size:16 final size:16
Alignment explanation
Indices: 5650735--5650772 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
5650725 TTTTTTTAAA
*
5650735 AATTTTTTTATTTTTTT
1 AATTTTTTT-TTTTTGT
5650752 AATTTTTTTTTTTTGT
1 AATTTTTTTTTTTTGT
5650768 AATTT
1 AATTT
5650773 GAAAACTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
AATTTTTTTTTTTTGT
Found at i:5651579 original size:20 final size:20
Alignment explanation
Indices: 5651542--5651580 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
5651532 TACGCAATTA
* *
5651542 AGTTCCAAGGTTTACAAATG
1 AGTTCAAAGATTTACAAATG
*
5651562 AGTTCAAAGATTTTCAAAT
1 AGTTCAAAGATTTACAAAT
5651581 AAGAGATCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
AGTTCAAAGATTTACAAATG
Found at i:5651930 original size:36 final size:36
Alignment explanation
Indices: 5651862--5652002 Score: 140
Period size: 36 Copynumber: 3.9 Consensus size: 36
5651852 ATGAATGTTT
* * * *
5651862 TGAATACAAGTATCAATTAAAGTCAGTGTCATGTCC
1 TGAATGCAAGTATCAATAAAAATCAATGTCATGTCC
* * *
5651898 T-AAGTGCACGTATCAATAAAAATCAATATCATGTCT
1 TGAA-TGCAAGTATCAATAAAAATCAATGTCATGTCC
* * * *
5651934 TGAATGCAAGTATCAACATAAATTAATGTCATGTCT
1 TGAATGCAAGTATCAATAAAAATCAATGTCATGTCC
* * *
5651970 TGAATGCAATTATCAATGAAAGTCAATGTCATG
1 TGAATGCAAGTATCAATAAAAATCAATGTCATG
5652003 CACTCTAGAC
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
35 2 0.02
36 81 0.95
37 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (36 bp):
TGAATGCAAGTATCAATAAAAATCAATGTCATGTCC
Found at i:5651984 original size:72 final size:72
Alignment explanation
Indices: 5651856--5652002 Score: 163
Period size: 72 Copynumber: 2.0 Consensus size: 72
5651846 CATGCAATGA
* * * *
5651856 ATGTTTTGAATACAAGTATCAATTAAAGTCAGTGTCATGTCCTAAGTGCACGTATCAATAAAAAT
1 ATGTCTTGAATACAAGTATCAAATAAAGTCAATGTCATGTCCTAAGTGCAAGTATCAATAAAAAT
5651921 CAATATC
66 CAATATC
* * * * *
5651928 ATGTCTTGAATGCAAGTATCAACATAAA-TTAATGTCATGTCTTGAA-TGCAATTATCAATGAAA
1 ATGTCTTGAATACAAGTATCAA-ATAAAGTCAATGTCATGTCCT-AAGTGCAAGTATCAATAAAA
* *
5651991 GTCAATGTC
64 ATCAATATC
5652000 ATG
1 ATG
5652003 CACTCTAGAC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
72 56 0.90
73 6 0.10
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (72 bp):
ATGTCTTGAATACAAGTATCAAATAAAGTCAATGTCATGTCCTAAGTGCAAGTATCAATAAAAAT
CAATATC
Found at i:5665484 original size:15 final size:15
Alignment explanation
Indices: 5665464--5665498 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
5665454 ATTTATGATT
5665464 CTTTTTTATTTTTAA
1 CTTTTTTATTTTTAA
*
5665479 CTTTTTTGTTTTTAA
1 CTTTTTTATTTTTAA
5665494 CTTTT
1 CTTTT
5665499 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (15 bp):
CTTTTTTATTTTTAA
Found at i:5673173 original size:21 final size:22
Alignment explanation
Indices: 5673133--5673179 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
5673123 TTATATATGT
5673133 TATAAATTTTAAAAATTTAA-A
1 TATAAATTTTAAAAATTTAACA
*
5673154 TATAAA-TTTAAAACTATTAACA
1 TATAAATTTTAAAAAT-TTAACA
5673176 TATA
1 TATA
5673180 TATAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 10 0.43
22 5 0.22
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
TATAAATTTTAAAAATTTAACA
Found at i:5675563 original size:557 final size:568
Alignment explanation
Indices: 5674834--5675915 Score: 1406
Period size: 557 Copynumber: 1.9 Consensus size: 568
5674824 GATTTTTATA
* ** * * *
5674834 TTATATAAATATATAAAAGCCAAAACTTTTGGCAAAAAAGGAAAATGTCAAATGTGGATGGATTA
1 TTATATAAATATATAAAAGCCAAAACTTTTAGCAAAAAAAAAAAAAGTCAAATATGGATGGACTA
* * * *
5674899 TAATATTAACATATGAACAAACTTTATCTATTATCACATGTCCTATATTAATTATATTTATTCAT
66 TAATATTAACATATGAACAAACTTTAACAATCACCACATGTCCTATATTAATTATATTTATTCAT
* *
5674964 ATTTATTTCTCTTTAAATTGATGTGAATTGAGTTGATTTCATAAAAAATTTT-AAATATTTAAAT
131 ATTTATTTCCCTTTAAATTGATATGAATTGAGTTGATTTCAT-AAAAATTTTAAAATATTTAAAT
5675028 GCATTAATTATATTTATTTTCTTTTGAATTTTCAATTGAC-A-T-A-TC-TT-TTA-T-TTT-CA
195 GCATTAATTATATTTATTTTCTTTTGAATTTTCAATTGACTATTAATTCATTATTATTATTTCCA
*
5675084 ATAAAATATCCTAAATTATAAATCAAAGCTAAATAAATGATGCATTATAATCAAAGAATTTCTCA
260 ATAAAATATCCTAAATTATAAATCAAAGCTAAATAAATGATACATTATAATCAAAGAATTTCTCA
* *
5675149 ATAATTCAAAGAATT-A-AAACACTATAATTA-AGGTCATTAAACA-TTTTTAATTATTCAAAGA
325 ATAATTCAAAGAATTAATAAACACTATAATTACA-ATCATTAAACATTTTTTAATGATTCAAA-A
* * *
5675210 ATTTCTATTGAAATCTAAT-AGGAAATATTAT-AAAAAGTTAATAATTACTATAATTACGGTCAA
388 ATTTCCATTGAAATCTAATAAGG-AATATTATAAAAAAGTTAATAATCACTATAATTACGATCAA
* *
5675273 GAGTTGTCTCCTTAATCAATTATTTGATACAT-TCATATTTTATTAAATATGATATTCAACTAAG
452 GAGTTGACTCCTTAATCAATTATTTGATAC-TCTCATATTTAATTAAATATGATATTCAACTAAG
5675337 TAATAAATGTTTTATATATAATATAATAATTTTATATATTTATATCTTATATC
516 TAATAAATGTTTTATATATAATATAATAATTTTATATATTTATATCTTATATC
*
5675390 TTATATAAATATATAAAAGCCAAAACTTTTAGCAAAAAAAAAAAAAAGTCCAATATGGATGGACT
1 TTATATAAATATATAAAAGCCAAAACTTTTAGC-AAAAAAAAAAAAAGTCAAATATGGATGGACT
* * * * ** *
5675455 ATAATATTGACATGTGGATAATTTTTAACAATCACCACGTGTCCTATATTAATTATATTTATTCA
65 ATAATATTAACATATGAACAAACTTTAACAATCACCACATGTCCTATATTAATTATATTTATTCA
* *
5675520 TATTTATTTCCCTTTAAATTGATATGAATTGATTTGATTTCATAAAAATTTTAAAATATTTCAAT
130 TATTTATTTCCCTTTAAATTGATATGAATTGAGTTGATTTCATAAAAATTTTAAAATATTTAAAT
*
5675585 GCATTAATTATATTTATTTTCTTTTGAATTTTTAATTGACTTTATTTTCTTTTGAATTTTCAATT
195 GCATTAATTATATTTATTTTCTTTTGAATTTTCAATTGAC--TA-------TT-AA--TTC-ATT
*
5675650 GACTTACTTCTTATTTCCAATAAAATATCCTAAATTATAAATCAAAGCTAAATCAATGATACATT
247 -A-TTA----TTATTTCCAATAAAATATCCTAAATTATAAATCAAAGCTAAATAAATGATACATT
* * * * *
5675715 ATAATGAAAGAATTTCTTAATGATTCAAAGAATTAATAAACATTATAATTACAATCATTAAATAT
306 ATAATCAAAGAATTTCTCAATAATTCAAAGAATTAATAAACACTATAATTACAATCATTAAACA-
* *
5675780 TTTTTTAATGATTCAAAAATTTCCATTGAAATCTAATAAGGAATATTATAAAAAAAATTTTATAA
370 TTTTTTAATGATTCAAAAATTTCCATTGAAATCTAATAAGGAATATTAT--AAAAAAGTTAATAA
* * * *
5675845 TCACTATAATTACGATTAATAGTTGACTCTTTAATCAATTTTTTGATACTCTCATATTTAATTAA
433 TCACTATAATTACGATCAAGAGTTGACTCCTTAATCAATTATTTGATACTCTCATATTTAATTAA
5675910 ATATGA
498 ATATGA
5675916 CATCCAATTG
Statistics
Matches: 443, Mismatches: 43, Indels: 45
0.83 0.08 0.08
Matches are distributed among these distances:
556 41 0.09
557 169 0.38
560 1 0.00
568 1 0.00
570 1 0.00
573 2 0.00
575 2 0.00
578 3 0.01
583 1 0.00
584 3 0.01
585 77 0.17
586 1 0.00
587 22 0.05
588 28 0.06
589 18 0.04
590 1 0.00
591 72 0.16
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (568 bp):
TTATATAAATATATAAAAGCCAAAACTTTTAGCAAAAAAAAAAAAAGTCAAATATGGATGGACTA
TAATATTAACATATGAACAAACTTTAACAATCACCACATGTCCTATATTAATTATATTTATTCAT
ATTTATTTCCCTTTAAATTGATATGAATTGAGTTGATTTCATAAAAATTTTAAAATATTTAAATG
CATTAATTATATTTATTTTCTTTTGAATTTTCAATTGACTATTAATTCATTATTATTATTTCCAA
TAAAATATCCTAAATTATAAATCAAAGCTAAATAAATGATACATTATAATCAAAGAATTTCTCAA
TAATTCAAAGAATTAATAAACACTATAATTACAATCATTAAACATTTTTTAATGATTCAAAAATT
TCCATTGAAATCTAATAAGGAATATTATAAAAAAGTTAATAATCACTATAATTACGATCAAGAGT
TGACTCCTTAATCAATTATTTGATACTCTCATATTTAATTAAATATGATATTCAACTAAGTAATA
AATGTTTTATATATAATATAATAATTTTATATATTTATATCTTATATC
Found at i:5675619 original size:28 final size:28
Alignment explanation
Indices: 5675588--5675651 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
5675578 TTTCAATGCA
5675588 TTAATT-ATATTTATTTTCTTTTGAATTT
1 TTAATTGA-ATTTATTTTCTTTTGAATTT
*
5675616 TTAATTGACTTTATTTTCTTTTGAATTT
1 TTAATTGAATTTATTTTCTTTTGAATTT
*
5675644 TCAATTGA
1 TTAATTGA
5675652 CTTACTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (28 bp):
TTAATTGAATTTATTTTCTTTTGAATTT
Found at i:5675652 original size:28 final size:28
Alignment explanation
Indices: 5675597--5675654 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
5675587 ATTAATTATA
*
5675597 TTTATTTTCTTTTGAATTTTTAATTGAC
1 TTTATTTTCTTTTGAATTTTCAATTGAC
5675625 TTTATTTTCTTTTGAATTTTCAATTGAC
1 TTTATTTTCTTTTGAATTTTCAATTGAC
5675653 TT
1 TT
5675655 ACTTCTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.09, G:0.07, T:0.64
Consensus pattern (28 bp):
TTTATTTTCTTTTGAATTTTCAATTGAC
Found at i:5676022 original size:44 final size:45
Alignment explanation
Indices: 5675974--5676072 Score: 148
Period size: 44 Copynumber: 2.2 Consensus size: 45
5675964 TAATATACTA
*
5675974 ATTTTATATATTT-ATATAAGATTAATGATACATTATAATGTTAG
1 ATTTTATATATTTGATATAAGATTAATCATACATTATAATGTTAG
* * *
5676018 ATTTT-TGTCTTTGTTATAAGATTAATCATACATTATAATGTTAG
1 ATTTTATATATTTGATATAAGATTAATCATACATTATAATGTTAG
5676062 ATTTTATATAT
1 ATTTTATATAT
5676073 AAGGGTTGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 5 0.11
44 39 0.83
45 3 0.06
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (45 bp):
ATTTTATATATTTGATATAAGATTAATCATACATTATAATGTTAG
Found at i:5688032 original size:2 final size:2
Alignment explanation
Indices: 5688025--5688053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
5688015 ATTGTTTGGT
5688025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5688054 GTAGAAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5691667 original size:26 final size:26
Alignment explanation
Indices: 5691628--5691678 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5691618 CCGTGAGTAT
*
5691628 GCTTTTCTTTAAGATCCTTTACTAAA
1 GCTTTTCTTGAAGATCCTTTACTAAA
5691654 GCTTTTCTTGAAGATCCTTTACTAA
1 GCTTTTCTTGAAGATCCTTTACTAA
5691679 CACCATCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (26 bp):
GCTTTTCTTGAAGATCCTTTACTAAA
Found at i:5695096 original size:16 final size:18
Alignment explanation
Indices: 5695064--5695096 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
5695054 TCATTTACTT
5695064 TTCTGAATTAGTCAAGTA
1 TTCTGAATTAGTCAAGTA
5695082 TTCT-AATTA-TCAAGT
1 TTCTGAATTAGTCAAGT
5695097 TTTTAGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (18 bp):
TTCTGAATTAGTCAAGTA
Found at i:5697120 original size:27 final size:27
Alignment explanation
Indices: 5697090--5697148 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
5697080 CTAGATTTCC
5697090 CAACCA-ACCATTTCAAAATTAGAATAT
1 CAACCAGACCATTT-AAAATTAGAATAT
* * * *
5697117 CAACTAGCCCATTTAAAATTAGATTCT
1 CAACCAGACCATTTAAAATTAGAATAT
5697144 CAACC
1 CAACC
5697149 TGCCTAACCT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.27
Consensus pattern (27 bp):
CAACCAGACCATTTAAAATTAGAATAT
Found at i:5697819 original size:223 final size:223
Alignment explanation
Indices: 5697417--5697863 Score: 779
Period size: 223 Copynumber: 2.0 Consensus size: 223
5697407 TAAACATTTC
* **
5697417 TATTGTATTAATAAAAGGTGTAAGATCATGCACCTGGTACTTTATCTGCAAGTGTATCTCACATG
1 TATTGCATTAATAAAAGGTGTAAGATCATGCACCTGGTACTTTATCTGCAAGTACATCTCACATG
* *
5697482 ACAAGTTAAATATAAACTTTCGAGCCTTTACTACTAATCTTGACAATGTGTAAATTTCAAAAAAA
66 ACAAGTTAAATACAAACTTTCAAGCCTTTACTACTAATCTTGACAATGTGTAAATTTCAAAAAAA
*
5697547 ATTCAAGAAACCCTTAATGAATTAAATTAAAAGATAACAGTTTTTGAAGAAATCAA-AGCACTAA
131 ATTCAAGAAACCCTTAATGAATTAAATTAAAAGATAACAGTTCTTGAAGAAATCAAGA-CACTAA
5697611 AGAAAAATGAAACATGAAAAATTTTAGAT
195 AGAAAAATGAAACATGAAAAATTTTAGAT
5697640 TATTGCATTAATAAAAGGTGTAAGATCATGCACCTGGTACTTTATCTGCAAGTACATCTCACATG
1 TATTGCATTAATAAAAGGTGTAAGATCATGCACCTGGTACTTTATCTGCAAGTACATCTCACATG
* *
5697705 ACAAGTTAAGTACAAACTTTTAAGCCTTTACTACTAATCTTGACAATGTGTAAATTTCAAAAAAA
66 ACAAGTTAAATACAAACTTTCAAGCCTTTACTACTAATCTTGACAATGTGTAAATTTCAAAAAAA
* * *
5697770 ATTCAAGAAACCCTTAATGAATTAAATTGAAATATAGCAGTTCTTGAAGAAATCAAGACACTAAA
131 ATTCAAGAAACCCTTAATGAATTAAATTAAAAGATAACAGTTCTTGAAGAAATCAAGACACTAAA
5697835 GAAAAATGAAACATGAAAAATTTTAGAT
196 GAAAAATGAAACATGAAAAATTTTAGAT
5697863 T
1 T
5697864 TGCCCCAAAA
Statistics
Matches: 212, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
223 211 1.00
224 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (223 bp):
TATTGCATTAATAAAAGGTGTAAGATCATGCACCTGGTACTTTATCTGCAAGTACATCTCACATG
ACAAGTTAAATACAAACTTTCAAGCCTTTACTACTAATCTTGACAATGTGTAAATTTCAAAAAAA
ATTCAAGAAACCCTTAATGAATTAAATTAAAAGATAACAGTTCTTGAAGAAATCAAGACACTAAA
GAAAAATGAAACATGAAAAATTTTAGAT
Found at i:5702846 original size:17 final size:17
Alignment explanation
Indices: 5702824--5702862 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
5702814 TTATTGGTTT
*
5702824 TTCTTTGATGGCTTCCA
1 TTCTTTGATGACTTCCA
*
5702841 TTCTTTGATGATTTCCA
1 TTCTTTGATGACTTCCA
5702858 TTCTT
1 TTCTT
5702863 AGCAACATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.13, C:0.21, G:0.13, T:0.54
Consensus pattern (17 bp):
TTCTTTGATGACTTCCA
Found at i:5705908 original size:31 final size:31
Alignment explanation
Indices: 5705848--5705909 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
5705838 TTATAGCATA
**
5705848 AAGAAATTATCACATTTACTAATTTAAAAAT
1 AAGAAATTATCACATTTACTAATAAAAAAAT
*
5705879 AAGAAATTATCACATTTACTTATAAAAAAAT
1 AAGAAATTATCACATTTACTAATAAAAAAAT
5705910 TTAAACTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (31 bp):
AAGAAATTATCACATTTACTAATAAAAAAAT
Found at i:5706564 original size:2 final size:2
Alignment explanation
Indices: 5706557--5706585 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
5706547 AACCCCATTG
5706557 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5706586 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5706590 original size:2 final size:2
Alignment explanation
Indices: 5706585--5706615 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
5706575 ATATATATAT
5706585 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
5706616 CCAATAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5706868 original size:52 final size:53
Alignment explanation
Indices: 5706812--5706938 Score: 166
Period size: 53 Copynumber: 2.4 Consensus size: 53
5706802 AAAGGTATTC
* *
5706812 ACACTCAAATCCCAATTTTAATATGGGAATTTG-AATAGATTAAAACGTGTTA
1 ACACTCAAATCCCAATTTTAAAATGGGAATTGGAAATAGATTAAAACGTGTTA
* * ** *
5706864 ACACTCAAATCCCAATTTAAAAATGGGAATTGGAAATAGTTTAAAGGGTGTTC
1 ACACTCAAATCCCAATTTTAAAATGGGAATTGGAAATAGATTAAAACGTGTTA
* *
5706917 ACACCCAAGTCCCAATTTTAAA
1 ACACTCAAATCCCAATTTTAAA
5706939 CTAGGAGCTA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
52 30 0.47
53 34 0.53
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (53 bp):
ACACTCAAATCCCAATTTTAAAATGGGAATTGGAAATAGATTAAAACGTGTTA
Found at i:5706930 original size:53 final size:52
Alignment explanation
Indices: 5706798--5706934 Score: 175
Period size: 52 Copynumber: 2.6 Consensus size: 52
5706788 TAATTGCATT
* * * *
5706798 TTTAAAAGGTATTCACACTCAAATCCCAATTTTAATATGGGAATTTGAATAG
1 TTTAAAAGGTGTTCACACTCAAATCCCAATTTAAAAATGGGAATTGGAATAG
* * *
5706850 ATTAAAACGTGTTAACACTCAAATCCCAATTTAAAAATGGGAATTGGAAATAG
1 TTTAAAAGGTGTTCACACTCAAATCCCAATTTAAAAATGGGAATTGG-AATAG
* * *
5706903 TTTAAAGGGTGTTCACACCCAAGTCCCAATTT
1 TTTAAAAGGTGTTCACACTCAAATCCCAATTT
5706935 TAAACTAGGA
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
52 40 0.56
53 31 0.44
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (52 bp):
TTTAAAAGGTGTTCACACTCAAATCCCAATTTAAAAATGGGAATTGGAATAG
Found at i:5708276 original size:2 final size:2
Alignment explanation
Indices: 5708269--5708301 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5708259 CCTGCAATGG
5708269 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5708302 ACATAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5710887 original size:2 final size:2
Alignment explanation
Indices: 5710880--5710905 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5710870 TGAATTTGGT
5710880 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
5710906 CTAATATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5713390 original size:11 final size:11
Alignment explanation
Indices: 5713363--5713424 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
5713353 TTGAATATGA
*
5713363 TTATTTAAATT
1 TTATTTTAATT
5713374 TT-TTTTAATT
1 TTATTTTAATT
**
5713384 TTATTTTAAAA
1 TTATTTTAATT
*
5713395 TTATTTTATTTT
1 TTATTTTA-ATT
5713407 TTATTTTAATTT
1 TTATTTTAA-TT
5713419 TTATTT
1 TTATTT
5713425 CAATAAAGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
10 9 0.22
11 16 0.39
12 16 0.39
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTAATT
Found at i:5713865 original size:20 final size:21
Alignment explanation
Indices: 5713840--5713883 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
5713830 ATGCAATAGA
5713840 TTATCAATTACACATTA-TTT
1 TTATCAATTACACATTACTTT
*
5713860 TTATCAATTACACGTTACTTT
1 TTATCAATTACACATTACTTT
5713881 TTA
1 TTA
5713884 AATTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.32, C:0.16, G:0.02, T:0.50
Consensus pattern (21 bp):
TTATCAATTACACATTACTTT
Found at i:5717482 original size:28 final size:29
Alignment explanation
Indices: 5717419--5717498 Score: 94
Period size: 28 Copynumber: 2.8 Consensus size: 29
5717409 TTCATTTGAA
5717419 ATAAAAATTTATTTGAATACAAATTAAAAT
1 ATAAAAATTTATTTGAATA-AAATTAAAAT
*
5717449 TTAAAAATTTATTTGAAT-AAA-TAAAAGT
1 ATAAAAATTTATTTGAATAAAATTAAAA-T
* *
5717477 ATAAAAATTAATTTTAA-AAAAT
1 ATAAAAATTTATTTGAATAAAAT
5717499 GAAATAGTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
27 5 0.12
28 21 0.49
30 17 0.40
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (29 bp):
ATAAAAATTTATTTGAATAAAATTAAAAT
Found at i:5721491 original size:2 final size:2
Alignment explanation
Indices: 5721484--5721516 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
5721474 TGTTCTTGGT
*
5721484 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5721517 GTATCATGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5721879 original size:8 final size:8
Alignment explanation
Indices: 5721866--5721910 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
5721856 CATTTTATTC
5721866 ATTTTAAT
1 ATTTTAAT
5721874 ATTTTAAT
1 ATTTTAAT
5721882 ATTTT-AT
1 ATTTTAAT
*
5721889 ATTATATAT
1 ATTTTA-AT
5721898 ATTTTTAAT
1 A-TTTTAAT
5721907 ATTT
1 ATTT
5721911 CAATTACTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 6 0.19
8 16 0.50
9 6 0.19
10 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
ATTTTAAT
Found at i:5721922 original size:24 final size:26
Alignment explanation
Indices: 5721870--5721928 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
5721860 TTATTCATTT
*
5721870 TAATATTTTAATATTTTATATTATATA
1 TAAT-TTTTAATATTTCATATTATATA
5721897 T-ATTTTTAATATTTCA-ATTACT-TA
1 TAATTTTTAATATTTCATATTA-TATA
5721921 TAATTTTT
1 TAATTTTT
5721929 TTTTACAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 7 0.24
25 19 0.66
26 2 0.07
27 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (26 bp):
TAATTTTTAATATTTCATATTATATA
Found at i:5722847 original size:16 final size:16
Alignment explanation
Indices: 5722809--5722843 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
5722799 ATCTATCTAT
*
5722809 TAAATTATAATAAAAA
1 TAAATAATAATAAAAA
5722825 TAAATAATAA-AAAAA
1 TAAATAATAATAAAAA
5722840 TAAA
1 TAAA
5722844 ATAAAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAATAATAATAAAAA
Found at i:5723871 original size:12 final size:12
Alignment explanation
Indices: 5723854--5723879 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5723844 GCAGATTTCA
5723854 CTACTCACTTCT
1 CTACTCACTTCT
5723866 CTACTCACTTCT
1 CTACTCACTTCT
5723878 CT
1 CT
5723880 TTGTCATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.42, G:0.00, T:0.42
Consensus pattern (12 bp):
CTACTCACTTCT
Found at i:5740098 original size:202 final size:209
Alignment explanation
Indices: 5739604--5740136 Score: 651
Period size: 202 Copynumber: 2.6 Consensus size: 209
5739594 TACATTGACG
* * * *
5739604 TTTTTCTATAAATATTTCAATACATTGATAATATTTAAAAAAAATCTTTTCACTTAGGGATTTCA
1 TTTTT-TATAAATATTTCAATACACTGATAATATTT-AAAAAAATCTTCTCACTTAGAGATTTCG
* * * * *
5739669 TAAAGCATCACTATTCGAAATA-CTTTCAGAATATCATCATTGGATAAAA-TTTTTTTTCTTTAT
64 T-AGGTATCACTACTCGAAATACCTTT-A-AATCTCATCATTGAATAAAATTTTTTTTTCTTTAT
** * *
5739732 TTATATTACTATTATTTTTAATTTATTATTTAATTTGTATTTACTACTTTATAACAAAAAAGGAT
126 TTATATTAC-ATTATTTTTAATAAATTAATTAATTTGTATTTACTA-TTTATAACAAAAAAGGAA
*
5739797 AATTTTTATTGTATTAAAAAA
189 AAATTTTATTGTATTAAAAAA
* * *
5739818 TTTTTTATAAATA-CTCTAATACACTGATAGTATTTAAAAAAATCTTCTCACCTAGAGATTTCGT
1 TTTTTTATAAATATTTC-AATACACTGATAATATTTAAAAAAATCTTCTCACTTAGAGATTTCGT
* * * *
5739882 AGGTATCACTACTCGAAGTACCTTTAAATCCCATCCTTGAATAAAATTTTCTTTTTC-TTATTTT
65 AGGTATCACTACTCGAAATACCTTTAAATCTCATCATTGAATAAAATTTT-TTTTTCTTTATTTA
5739946 TATTAC-TTATTTTTAATAAATTAATTAACTTT-TATTT-C--TTTATTAAC-AAAAA-GAAAAA
129 TATTACATTATTTTTAATAAATTAATTAA-TTTGTATTTACTATTTA-TAACAAAAAAGGAAAAA
5740004 TTTTATTGTATT-AAAAA
192 TTTTATTGTATTAAAAAA
5740021 TTTTTTATAAATATTTCAATACACTGATAATATTT-AAAAAATCTTCTCACTTAGAGATTTCGTA
1 TTTTTTATAAATATTTCAATACACTGATAATATTTAAAAAAATCTTCTCACTTAGAGATTTCGTA
* * * *
5740085 GGTATTACTACTCGAAATACCTTTGAATCTCATCGTCGAATAAAATTTTTTT
66 GGTATCACTACTCGAAATACCTTTAAATCTCATCATTGAATAAAATTTTTTT
5740137 ATTATATTTT
Statistics
Matches: 282, Mismatches: 30, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
201 3 0.01
202 71 0.25
203 35 0.12
204 18 0.06
205 9 0.03
206 4 0.01
208 1 0.00
209 24 0.09
210 19 0.07
211 32 0.11
212 37 0.13
213 24 0.09
214 5 0.02
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.45
Consensus pattern (209 bp):
TTTTTTATAAATATTTCAATACACTGATAATATTTAAAAAAATCTTCTCACTTAGAGATTTCGTA
GGTATCACTACTCGAAATACCTTTAAATCTCATCATTGAATAAAATTTTTTTTTCTTTATTTATA
TTACATTATTTTTAATAAATTAATTAATTTGTATTTACTATTTATAACAAAAAAGGAAAAATTTT
ATTGTATTAAAAAA
Found at i:5740326 original size:13 final size:15
Alignment explanation
Indices: 5740300--5740342 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 15
5740290 TAACATGCAT
5740300 AAATATTAATAATAA
1 AAATATTAATAATAA
5740315 AAAT-TTAA-AATAA
1 AAATATTAATAATAA
5740328 AAA-A-TAAT-ATAA
1 AAATATTAATAATAA
5740340 AAA
1 AAA
5740343 ATTCAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 10 0.38
13 8 0.31
14 4 0.15
15 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATATTAATAATAA
Found at i:5741240 original size:14 final size:14
Alignment explanation
Indices: 5741209--5741249 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
5741199 CCGCTGCTAG
*
5741209 AAAAAA-AAAGAAA
1 AAAAAATAAATAAA
5741222 AAAAAATAAATAAA
1 AAAAAATAAATAAA
*
5741236 TAAAAAT-AATAAA
1 AAAAAATAAATAAA
5741249 A
1 A
5741250 TGGTGTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.12
Consensus pattern (14 bp):
AAAAAATAAATAAA
Found at i:5741433 original size:50 final size:50
Alignment explanation
Indices: 5741372--5741752 Score: 202
Period size: 48 Copynumber: 7.8 Consensus size: 50
5741362 TTTTTAATTT
* *
5741372 AAAAAGCTTTTCTAATCAAAGACTCAACAACTTTAAAATTCATCATCTTG
1 AAAAAGTTTTTCTAATCAGAGACTCAACAACTTTAAAATTCATCATCTTG
* * * *
5741422 GAAAAGTTTTTCTAAGT-AGATACTTAACAACTTTAAAAAT--TCATCTTG
1 AAAAAGTTTTTCTAA-TCAGAGACTCAACAACTTTAAAATTCATCATCTTG
* ** * * *
5741470 AAAAAATTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCAT-A--TTA
1 AAAAAGTTTTTCTAATCAGAGACTCAACAACTTTAAAATTCATCATCTTG
* ** * * * *
5741517 AAAAAGCTCATCTAAAGCAAATG-CTCAATAATTTTAAAA-T--TCATCTTG
1 AAAAAGTTTTTCT-AATCAGA-GACTCAACAACTTTAAAATTCATCATCTTG
* ** * * * *
5741565 AAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAAT--TCATCTTA
1 AAAAAGTTTTTCTAATCAGAGACTCAACAACTTTAAAATTCATCATCTTG
* * * * *
5741613 AAAAAGCTTTTCTAAGCAGAGGCTCAACAATTTTAAAATT--TCATCTTA
1 AAAAAGTTTTTCTAATCAGAGACTCAACAACTTTAAAATTCATCATCTTG
* ** * *
5741661 AAAAAGCTCCTCTAAGT-AGAGGCTCAACAACTACTTTAAAATTC-TCATTTTG
1 AAAAAGTTTTTCTAA-TCAGAGACTCAAC-A--ACTTTAAAATTCATCATCTTG
* ** * *
5741713 AAAAAGCTCCTCTAAGCAAATG-CTCAACAACTTTAAAATT
1 AAAAAGTTTTTCTAATCAGA-GACTCAACAACTTTAAAATT
5741753 AAATTATTAA
Statistics
Matches: 273, Mismatches: 40, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 33 0.12
48 148 0.54
49 14 0.05
50 33 0.12
51 12 0.04
52 29 0.11
53 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (50 bp):
AAAAAGTTTTTCTAATCAGAGACTCAACAACTTTAAAATTCATCATCTTG
Found at i:5741485 original size:48 final size:48
Alignment explanation
Indices: 5741447--5741750 Score: 339
Period size: 48 Copynumber: 6.3 Consensus size: 48
5741437 GTAGATACTT
*
5741447 AACAACTTTAAAAATTCATCTTGAAAAAATTCCTCTAAGCAGAGGCTC
1 AACAACTTTAAAAATTCATCTTGAAAAAACTCCTCTAAGCAGAGGCTC
* * * *
5741495 AACAACTTT-AAAATTCATATT-AAAAAAGCTCATCTAAAGCAAATGCTC
1 AACAACTTTAAAAATTCATCTTGAAAAAA-CTCCTCT-AAGCAGAGGCTC
* * *
5741543 AATAA-TTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTC
1 AACAACTTTAAAAATTCATCTTGAAAAAACTCCTCTAAGCAGAGGCTC
**
5741590 AACAACTTTAAAAATTCATCTT-AAAAAAGCTTTTCTAAGCAGAGGCTC
1 AACAACTTTAAAAATTCATCTTGAAAAAA-CTCCTCTAAGCAGAGGCTC
* * *
5741638 AACAATTTTAAAATTTCATCTT-AAAAAAGCTCCTCTAAGTAGAGGCTC
1 AACAACTTTAAAAATTCATCTTGAAAAAA-CTCCTCTAAGCAGAGGCTC
* * * * *
5741686 AACAACTACTTTAAAATTCTCATTTTGAAAAAGCTCCTCTAAGCAAATGCTC
1 AAC-A--ACTTTAAAAAT-TCATCTTGAAAAAACTCCTCTAAGCAGAGGCTC
5741738 AACAACTTTAAAA
1 AACAACTTTAAAA
5741751 TTAAATTATT
Statistics
Matches: 218, Mismatches: 27, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
46 6 0.03
47 38 0.17
48 118 0.54
49 15 0.07
51 11 0.05
52 25 0.11
53 5 0.02
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (48 bp):
AACAACTTTAAAAATTCATCTTGAAAAAACTCCTCTAAGCAGAGGCTC
Found at i:5741576 original size:95 final size:94
Alignment explanation
Indices: 5741447--5741752 Score: 396
Period size: 95 Copynumber: 3.2 Consensus size: 94
5741437 GTAGATACTT
* **
5741447 AACAACTTTAAAAATTCATCTTGAAAAAATTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCA
1 AACAA-TTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCA
5741512 TATTAAAAAAGCTCATCTAAAGCAAATGCTC
65 TATTAAAAAAGCTCATCT-AAGCAAATGCTC
*
5741543 AATAATTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTCA
1 AACAATTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTT-AAAATTCA
* ** * *
5741608 TCTTAAAAAAGCTTTTCTAAGCAGAGGCTC
65 TATTAAAAAAGCTCATCTAAGCAAATGCTC
* *
5741638 AACAATTTTAAAATTTCATCTTAAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTACTTTAAAAT
1 AACAATTTTAAAA-TTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAAC-A--ACTTTAAAA-
* * *
5741703 TCTCATTTTGAAAAAGCTCCTCTAAGCAAATGCTC
61 T-TCATATTAAAAAAGCTCATCTAAGCAAATGCTC
*
5741738 AACAACTTTAAAATT
1 AACAATTTTAAAATT
5741753 AAATTATTAA
Statistics
Matches: 184, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
95 70 0.38
96 62 0.34
97 1 0.01
98 4 0.02
99 8 0.04
100 39 0.21
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (94 bp):
AACAATTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCAT
ATTAAAAAAGCTCATCTAAGCAAATGCTC
Found at i:5742317 original size:33 final size:33
Alignment explanation
Indices: 5742280--5742365 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
5742270 TGACACTCGA
5742280 ATATTACCACCGAGAAAATGCAAATGACTTCAG
1 ATATTACCACCGAGAAAATGCAAATGACTTCAG
* * * **
5742313 ATATTACCATCAAGAAAATGTAAATGACTTTGG
1 ATATTACCACCGAGAAAATGCAAATGACTTCAG
**
5742346 ATATCGCCACCGAGAAAATG
1 ATATTACCACCGAGAAAATG
5742366 TAATTCAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (33 bp):
ATATTACCACCGAGAAAATGCAAATGACTTCAG
Found at i:5742329 original size:75 final size:74
Alignment explanation
Indices: 5741981--5742332 Score: 413
Period size: 75 Copynumber: 4.7 Consensus size: 74
5741971 TAACACTTAG
* * * * *
5741981 ATATCACCACCGAGAATATGTAAATGACTCCGGATATCATCATC-AGAAAATACAATTCAAACAT
1 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCATCAAGAAAATGCAATTCAAAC-T
5742045 TGACACTCGA
65 TGACACTCGA
* *
5742055 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCACTGAA-AAAATACAATTCAAACC
1 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCA-TCAAGAAAATGCAATTCAAA-C
*
5742119 TTGACACTCGG
64 TTGACACTCGA
* * * *
5742130 ATATCACCATCGAGAATATACAAATGACTTCAGATATCGCCA-CAAAAAAAATGCAATTCAAACT
1 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCATC-AAGAAAATGCAATTCAAACT
5742194 TGGACACTCGA
65 T-GACACTCGA
* * * ** * *
5742205 ATATCACCATCGAGAAAAGGCAAATGACTTTGGATATCGTCACCGAGAAAATGCAATTCAAATCT
1 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCATCAAGAAAATGCAATTCAAA-CT
5742270 TGACACTCGA
65 TGACACTCGA
* * * * *
5742280 ATATTACCACCGAGAAAATGCAAATGACTTCAGATATTACCATCAAGAAAATG
1 ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCATCAAGAAAATG
5742333 TAAATGACTT
Statistics
Matches: 240, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
74 43 0.18
75 191 0.80
76 6 0.03
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (74 bp):
ATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCATCAAGAAAATGCAATTCAAACTT
GACACTCGA
Found at i:5742331 original size:150 final size:150
Alignment explanation
Indices: 5741981--5742332 Score: 467
Period size: 150 Copynumber: 2.4 Consensus size: 150
5741971 TAACACTTAG
* * * * *
5741981 ATATCACCACCGAGAATATGTAAATGACTCCGGATATCATCATC-AGAAAATACAATTCAAACAT
1 ATATCACCACCGAGAATATGCAAATGACTTCAGATATCACCATCAAGAAAATGCAATTCAAACAT
* * *
5742045 TGACACTCGAATATCACCATCGAGAATATGCAAATGACTTCGGATATCACCACTGAAAAAATACA
66 TGACACTCGAATATCACCATCGAGAAAAGGCAAATGACTTCGGATATCACCACCGAAAAAATACA
*
5742110 ATTCAAACCTTGACACTCGG
131 ATTCAAACCTTGACACTCGA
* * * *
5742130 ATATCACCATCGAGAATATACAAATGACTTCAGATATCGCCA-CAAAAAAAATGCAATTCAAAC-
1 ATATCACCACCGAGAATATGCAAATGACTTCAGATATCACCATC-AAGAAAATGCAATTCAAACA
* ** * *
5742193 TTGGACACTCGAATATCACCATCGAGAAAAGGCAAATGACTTTGGATATCGTCACCGAGAAAATG
65 TT-GACACTCGAATATCACCATCGAGAAAAGGCAAATGACTTCGGATATCACCACCGAAAAAATA
*
5742258 CAATTCAAATCTTGACACTCGA
129 CAATTCAAACCTTGACACTCGA
* * *
5742280 ATATTACCACCGAGAAAATGCAAATGACTTCAGATATTACCATCAAGAAAATG
1 ATATCACCACCGAGAATATGCAAATGACTTCAGATATCACCATCAAGAAAATG
5742333 TAAATGACTT
Statistics
Matches: 173, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
148 1 0.01
149 37 0.21
150 134 0.77
151 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (150 bp):
ATATCACCACCGAGAATATGCAAATGACTTCAGATATCACCATCAAGAAAATGCAATTCAAACAT
TGACACTCGAATATCACCATCGAGAAAAGGCAAATGACTTCGGATATCACCACCGAAAAAATACA
ATTCAAACCTTGACACTCGA
Found at i:5742341 original size:108 final size:107
Alignment explanation
Indices: 5742205--5742521 Score: 373
Period size: 108 Copynumber: 2.9 Consensus size: 107
5742195 GGACACTCGA
* *
5742205 ATATCACCATCGAGAAAAGGCAAATGACTTTGGATATCGTCACCGAGAAAATGCAATTCAAATCT
1 ATATCACCATCAAGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAA-CT
* * *
5742270 TGACACTCGAATATTACCACCGAGAAAATGCAAATGACTTCAG
65 TGACATTCGGATATTACCATCGAGAAAATGCAAATGACTTCAG
* * * *
5742313 ATATTACCATCAAGAAAATGTAAATGACTTTGGATATCGCCACCGAGAAAATGTAATTCAAACTT
1 ATATCACCATCAAGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAAC-T
* * * *
5742378 TGACATTTGGATATTACCATCGAGAAAAGGTAAATGACTTCGG
65 TGACATTCGGATATTACCATCGAGAAAATGCAAATGACTTCAG
* * ** *
5742421 ATATCGCCACTAAGAAAAAAGAAAAGGCAAATGACTTCAGATATAGCCACCGAGAAAATGCAATT
1 ATATCACCA-T------CAAGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATT
*
5742486 CAAACCTTGACATTCGGATATCACCATCGAGAAAAT
59 CAAA-CTTGACATTCGGATATTACCATCGAGAAAAT
5742522 ATGAATGACT
Statistics
Matches: 175, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
107 1 0.01
108 100 0.57
109 1 0.01
115 72 0.41
116 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (107 bp):
ATATCACCATCAAGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAACTT
GACATTCGGATATTACCATCGAGAAAATGCAAATGACTTCAG
Found at i:5742477 original size:40 final size:40
Alignment explanation
Indices: 5742400--5742478 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
5742390 ATTACCATCG
* * * *
5742400 AGAAAAGGTAAATGACTTCGGATATCGCCACTAAGAAAAA
1 AGAAAAGGCAAATGACTTCAGATATAGCCACCAAGAAAAA
*
5742440 AGAAAAGGCAAATGACTTCAGATATAGCCACCGAGAAAA
1 AGAAAAGGCAAATGACTTCAGATATAGCCACCAAGAAAA
5742479 TGCAATTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.15
Consensus pattern (40 bp):
AGAAAAGGCAAATGACTTCAGATATAGCCACCAAGAAAAA
Found at i:5742490 original size:115 final size:114
Alignment explanation
Indices: 5742217--5742553 Score: 400
Period size: 115 Copynumber: 3.0 Consensus size: 114
5742207 ATCACCATCG
* * *
5742217 AGAAAAGGCAAATGACTTTGGATATCGTCACCGAGAAAATGCAATTCAAA-TCTTGACACTCGAA
1 AGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAACT-TTGACATTCGGA
* * * ** *
5742281 TATTACCACCGAGAAAATGCAAATGACTTCAGATATTACCA-T-----CA
65 TATTACCATCGAGAAAATGTAAATGACTTCGGATATCGCCACTAGAAAAA
* * * *
5742325 AGAAAATGTAAATGACTTTGGATATCGCCACCGAGAAAATGTAATTCAAACTTTGACATTTGGAT
1 AGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAACTTTGACATTCGGAT
*
5742390 ATTACCATCGAGAAAAGGTAAATGACTTCGGATATCGCCACTAAGAAAAA
66 ATTACCATCGAGAAAATGTAAATGACTTCGGATATCGCCACT-AGAAAAA
** * *
5742440 AGAAAAGGCAAATGACTTCAGATATAGCCACCGAGAAAATGCAATTCAAACCTTGACATTCGGAT
1 AGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAACTTTGACATTCGGAT
* * * *
5742505 ATCACCATCGAGAAAATATGAATGACTTTGGATATCGCCACTGAGAAAA
66 ATTACCATCGAGAAAATGTAAATGACTTCGGATATCGCCACT-AGAAAA
5742554 TATAATTTAA
Statistics
Matches: 193, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
108 90 0.47
109 2 0.01
115 101 0.52
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (114 bp):
AGAAAAGGCAAATGACTTTGGATATCGCCACCGAGAAAATGCAATTCAAACTTTGACATTCGGAT
ATTACCATCGAGAAAATGTAAATGACTTCGGATATCGCCACTAGAAAAA
Found at i:5742517 original size:42 final size:41
Alignment explanation
Indices: 5742471--5742656 Score: 131
Period size: 42 Copynumber: 4.7 Consensus size: 41
5742461 ATATAGCCAC
**
5742471 CGAGAAAATGCAATTCAAACCTTGACATTCGGATATCACCA
1 CGAGAAAATATAATTCAAACCTTGACATTCGGATATCACCA
* * *
5742512 TCGAG-AAA-AT-A-T-GAA---TGAC-TTTGGATATCGCCA
1 -CGAGAAAATATAATTCAAACCTTGACATTCGGATATCACCA
* * *
5742545 CTGAGAAAATATAATTTAAACTTTGATACTT-GGATATCACCA
1 C-GAGAAAATATAATTCAAACCTTGACA-TTCGGATATCACCA
* * * *
5742587 CTGAGAAGATGTAATTCAAATCTTGACACTCGGATATCACCA
1 C-GAGAAAATATAATTCAAACCTTGACATTCGGATATCACCA
* *
5742629 TTGAGAATATATAATTCAAACCTTGACA
1 -CGAGAAAATATAATTCAAACCTTGACA
5742657 AGATATTACC
Statistics
Matches: 112, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
32 1 0.01
33 15 0.13
34 7 0.06
35 2 0.02
36 1 0.01
37 3 0.03
38 3 0.03
39 1 0.01
41 7 0.06
42 70 0.62
43 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (41 bp):
CGAGAAAATATAATTCAAACCTTGACATTCGGATATCACCA
Found at i:5743140 original size:35 final size:34
Alignment explanation
Indices: 5743059--5743148 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 34
5743049 TATGAGGCAA
*
5743059 ATGAAATGCAAATGTCTTTTCTTAAATGATGCTC
1 ATGAAATGCAAATGTCTTTTCTTAAAAGATGCTC
* * *
5743093 ATGAGATGCAAATGACTTTTTTTAAAAAGATG-TAC
1 ATGAAATGCAAATGTCTTTTCTT-AAAAGATGCT-C
*
5743128 ATGAAATACAAATGTCTTTTC
1 ATGAAATGCAAATGTCTTTTC
5743149 CAAAAATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
34 21 0.46
35 25 0.54
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (34 bp):
ATGAAATGCAAATGTCTTTTCTTAAAAGATGCTC
Found at i:5746146 original size:19 final size:20
Alignment explanation
Indices: 5746102--5746146 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
5746092 TTATTTATAT
* *
5746102 TACTATAATTTTTAATTTAT
1 TACTTTAATTTTTAATTTAC
5746122 TA-TTTAATTTTT-ATTTAC
1 TACTTTAATTTTTAATTTAC
5746140 TACTTTA
1 TACTTTA
5746147 TAACAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 7 0.32
19 13 0.59
20 2 0.09
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (20 bp):
TACTTTAATTTTTAATTTAC
Found at i:5746500 original size:200 final size:206
Alignment explanation
Indices: 5745967--5746509 Score: 621
Period size: 200 Copynumber: 2.6 Consensus size: 206
5745957 TATATTGAAG
* * * * *
5745967 TTTTTCTATAAATATTCTAATACACTGGTAATATTTAAAAAAATCTTCTCACATA-AGAATTTCG
1 TTTTT-TATAAATACTCCAATACACTGGTAGTATTTAAAAAAATCTTTTCACTTAGAGAA-TTCG
** *
5746031 TAAAACATCACTACTCGGAATACTTTTAGAATTCCATCATTG-GATAAAATTTCCTTTTTCCTTA
64 T-AGGCATCACTACTCGGAATACCTTT-GAA-T-C-TCATTGTGATAAAATTT--TTTTTCCTTA
* ** *
5746095 TTTATATTACTATAATTTTTAATTTATTATTTAATTTTTATTTACTACTTTATAACAAAAAAAAG
122 TTTTTATTACTATAATTTTTAATAAATTAATTAATTTTTATTTACTA-TTTATAAC--AAAAAAG
* *
5746160 ATAATTTTTATTGTATTAAAAAA
184 ATAAATTTTACTGTATTAAAAAA
*
5746183 ATTTTTATAAATACTCCAATACACTGGTAGTATTTAAAAAAATCTTTTCACTTAGA-AATTCTGT
1 TTTTTTATAAATACTCCAATACACTGGTAGTATTTAAAAAAATCTTTTCACTTAGAGAATTC-GT
* * * * *
5746247 AGGTATCACTACTC-GAAGTATCTTTAAATCCCATCCT-TAGATAAAAATTTTTTTCCTTATTTT
65 AGGCATCACTACTCGGAA-TACCTTTGAATCTCAT--TGT-GATAAAATTTTTTTTCCTTATTTT
5746310 TATTACT-T-ATTTTTAATAAATTAATTAATTTTTATTT-C--TTTATTAAC-AAAAAGA-AAAT
126 TATTACTATAATTTTTAATAAATTAATTAATTTTTATTTACTATTTA-TAACAAAAAAGATAAAT
5746368 TTTACTGTATT-AAAAA
190 TTTACTGTATTAAAAAA
5746384 TTTTTTATAAATACTCCAATACACTGGTAGTATTT-AAAAAATCTTTTCACTTAGAGAATTCGTA
1 TTTTTTATAAATACTCCAATACACTGGTAGTATTTAAAAAAATCTTTTCACTTAGAGAATTCGTA
5746448 GGCATCACTACTCGGAATACCTTTGAATCTCATTGTCGAATAAAATTTTTTTT-CTTATTTTT
66 GGCATCACTACTCGGAATACCTTTGAATCTCATTGT-G-ATAAAATTTTTTTTCCTTATTTTT
5746510 CTTATTTTAT
Statistics
Matches: 288, Mismatches: 27, Indels: 41
0.81 0.08 0.12
Matches are distributed among these distances:
198 1 0.00
199 11 0.04
200 61 0.21
201 47 0.16
202 13 0.05
203 7 0.02
205 4 0.01
206 4 0.01
208 1 0.00
209 26 0.09
210 4 0.01
211 21 0.07
212 2 0.01
213 14 0.05
214 19 0.07
215 48 0.17
216 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (206 bp):
TTTTTTATAAATACTCCAATACACTGGTAGTATTTAAAAAAATCTTTTCACTTAGAGAATTCGTA
GGCATCACTACTCGGAATACCTTTGAATCTCATTGTGATAAAATTTTTTTTCCTTATTTTTATTA
CTATAATTTTTAATAAATTAATTAATTTTTATTTACTATTTATAACAAAAAAGATAAATTTTACT
GTATTAAAAAA
Found at i:5746690 original size:14 final size:15
Alignment explanation
Indices: 5746660--5746704 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
5746650 TAACATGCAT
5746660 AAATATTAATAATAA
1 AAATATTAATAATAA
5746675 AAAT-TTAA-AATAA
1 AAATATTAATAATAA
5746688 AAA-A-TAATATATAA
1 AAATATTAATA-ATAA
5746702 AAA
1 AAA
5746705 ATCTAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.11
13 9 0.33
14 11 0.41
15 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATTAATAATAA
Found at i:5747657 original size:12 final size:11
Alignment explanation
Indices: 5747613--5747664 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
5747603 AAAAAGAAAG
5747613 AAAAAAAATAA
1 AAAAAAAATAA
*
5747624 AAGAAAGAATAA
1 AA-AAAAAATAA
*
5747636 ATAAATAAATAA
1 A-AAAAAAATAA
5747648 AAATAAAAATAA
1 AAA-AAAAATAA
5747660 TAAAA
1 -AAAA
5747665 TGGTGTCTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
11 4 0.12
12 25 0.76
13 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:5747658 original size:24 final size:23
Alignment explanation
Indices: 5747618--5747663 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
5747608 GAAAGAAAAA
*
5747618 AAATAAAAGAAAGAATAAATAAAT
1 AAATAAAAGAAAAAAT-AATAAAT
5747642 AAATAAAA-ATAAAAATAATAAA
1 AAATAAAAGA-AAAAATAATAAA
5747664 ATGGTGTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (23 bp):
AAATAAAAGAAAAAATAATAAAT
Found at i:5747665 original size:14 final size:14
Alignment explanation
Indices: 5747603--5747664 Score: 54
Period size: 15 Copynumber: 4.3 Consensus size: 14
5747593 CCGCTGCCAG
* *
5747603 AAAAAGAAAGAAA-
1 AAAAATAAAAAAAT
*
5747616 AAAAATAAAAGAAAG
1 AAAAATAAAA-AAAT
*
5747631 AATAAATAAATAAAT
1 AA-AAATAAAAAAAT
5747646 AAAAATAAAAATAAT
1 AAAAATAAAAA-AAT
5747661 AAAA
1 AAAA
5747665 TGGTGTCTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 8 0.20
14 11 0.28
15 14 0.35
16 7 0.17
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:5747665 original size:20 final size:20
Alignment explanation
Indices: 5747614--5747665 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
5747604 AAAAGAAAGA
*
5747614 AAAAAAATAAAAGAAAGAAT
1 AAAAAAATAAAATAAAGAAT
*
5747634 AAATAAAT-AAATAAA-AAT
1 AAAAAAATAAAATAAAGAAT
5747652 AAAAATAATAAAAT
1 AAAAA-AATAAAAT
5747666 GGTGTCTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 7 0.26
19 9 0.33
20 11 0.41
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (20 bp):
AAAAAAATAAAATAAAGAAT
Found at i:5747665 original size:24 final size:23
Alignment explanation
Indices: 5747613--5747665 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
5747603 AAAAAGAAAG
*
5747613 AAAAA-AAATAAAAGAAAGAATA
1 AAAAATAAATAAAAGAAAAAATA
5747635 AATAAATAAATAAAA-ATAAAAATA
1 AA-AAATAAATAAAAGA-AAAAATA
5747659 ATAAAAT
1 A-AAAAT
5747666 GGTGTCTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 19 0.73
25 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (23 bp):
AAAAATAAATAAAAGAAAAAATA
Found at i:5752879 original size:56 final size:57
Alignment explanation
Indices: 5752728--5752939 Score: 266
Period size: 58 Copynumber: 3.7 Consensus size: 57
5752718 GGAACGGTAA
* ** * *
5752728 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
*
5752786 AAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 -AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
* * * *
5752844 -AAAAGATATTTTG-GGAAAAAATTGAAAGTATCAATTTTTCTCGAGATTAAAATTTC
1 AAAAAAATATTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
* *
5752900 TAAAAAAATATTTTGGGGAAAAGTTGAAGGTATCAATTTT
1 -AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
5752940 TTCTGCACAA
Statistics
Matches: 136, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
55 2 0.01
56 48 0.35
58 75 0.55
59 11 0.08
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.35
Consensus pattern (57 bp):
AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
Found at i:5752905 original size:114 final size:115
Alignment explanation
Indices: 5752729--5752939 Score: 293
Period size: 114 Copynumber: 1.8 Consensus size: 115
5752719 GAACGGTAAA
* * *
5752729 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTCAAAAAAAA
1 AAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCTTCAAAAATAAAATTTCAAAAAAAA
5752794 TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
66 TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
* * * * *
5752844 AAAAGATA-TTTTG-GGAAAAAATTGAAAGTATCAATTTT-TCTCGAGATTAAAATTTCTAAAAA
1 AAAAAATATTTTTGAGG-AAAAATTGAAAGTATCAATTTTCT-TCAAAAATAAAATTTCAAAAAA
* *
5752906 AATATTTTGGGGAAAAGTTGAAGGTATCAATTTT
64 AATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
5752940 TTCTGCACAA
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
113 3 0.04
114 74 0.88
115 7 0.08
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (115 bp):
AAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCTTCAAAAATAAAATTTCAAAAAAAA
TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
Found at i:5757200 original size:31 final size:31
Alignment explanation
Indices: 5757162--5757241 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
5757152 ATCAACAATG
5757162 GATGAAAAATGAGAAAAAAAGAAAAAAAG-AT
1 GATGAAAAATGAGAAAAAAA-AAAAAAAGAAT
** *
5757193 GATGAAAAAAAAG-AAAAAAAAAGAAAGAAT
1 GATGAAAAATGAGAAAAAAAAAAAAAAGAAT
5757223 GAATGAAAAAATGA-AAAAA
1 G-ATG-AAAAATGAGAAAAA
5757242 GATTCAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
29 7 0.17
30 9 0.22
31 14 0.35
32 10 0.25
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (31 bp):
GATGAAAAATGAGAAAAAAAAAAAAAAGAAT
Found at i:5758507 original size:41 final size:41
Alignment explanation
Indices: 5758462--5758964 Score: 767
Period size: 41 Copynumber: 12.1 Consensus size: 41
5758452 ATGATTGTCA
*
5758462 AGGAGCAATTTACTTTTCAAAGACGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
5758503 AGGAGCAATTTAC-TTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
* *
5758544 AGGAGCAATTTACTTTCCGAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
5758585 ATGAACAATTTACTTTTCCAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
**
5758626 AGGAGCAATTTACTTTTTGAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
5758667 AGGAGC-ATTTATTTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA--CTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
5758709 ATGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
5758750 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTT--A-G
*
5758794 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
5758835 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
**
5758876 AGGAATAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
5758918 AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
5758959 AGGAGC
1 AGGAGC
5758965 TTTGAAAAAA
Statistics
Matches: 425, Mismatches: 28, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
40 9 0.02
41 296 0.70
42 74 0.17
43 6 0.01
44 40 0.09
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:5758913 original size:209 final size:205
Alignment explanation
Indices: 5758462--5758964 Score: 776
Period size: 209 Copynumber: 2.4 Consensus size: 205
5758452 ATGATTGTCA
*
5758462 AGGAGCAATTTAC-TTTTCAAAGACGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCAAAAG
1 AGGAG-AATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAG
* *
5758525 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCGAAGTCGTGGTGCCTCTGTTTAGATGAA
64 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAA
* **
5758590 CAATTTACTTTTCCAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTGAAGTCGTGGT
129 CAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGT
5758655 GCCTCTGTTTAG
194 GCCTCTGTTTAG
* * *
5758667 AGGAGCATTTATTTTTTTCAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTTACTTTTCAAAGT
1 AGGAGAATTTA-CTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
* *
5758732 CGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGG
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGA--
* *
5758797 AGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTG
128 A-CAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTG
5758862 GTGCCTCTGTTTAG
192 GTGCCTCTGTTTAG
* *
5758876 AGGAATAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
1 AGG-AGAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
* *
5758941 CGTTGAGCCTCTGTTTAGAGGAGC
65 CGTGGTGCCTCTGTTTAGAGGAGC
5758965 TTTGAAAAAA
Statistics
Matches: 271, Mismatches: 20, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
204 5 0.02
205 5 0.02
206 103 0.38
207 4 0.01
208 1 0.00
209 147 0.54
210 6 0.02
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (205 bp):
AGGAGAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAACA
ATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGC
CTCTGTTTAG
Found at i:5758991 original size:14 final size:13
Alignment explanation
Indices: 5758969--5759001 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
5758959 AGGAGCTTTG
5758969 AAAAAAAAAACAA
1 AAAAAAAAAACAA
5758982 AAAAACAAAAACAA
1 AAAAA-AAAAACAA
5758996 AAAAAA
1 AAAAAA
5759002 GTTGCCTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:5759115 original size:116 final size:117
Alignment explanation
Indices: 5758965--5759196 Score: 412
Period size: 116 Copynumber: 2.0 Consensus size: 117
5758955 TTAGAGGAGC
* *
5758965 TTTGAAAAAAAAAACAAAAAAACAAAAACAAAAAAAAGTTGCCTCTATTTAGTGGAGCTTTGTTT
1 TTTGAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTT
5759030 ATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTT
66 ATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTT
* *
5759082 TTTGAAAAAAAAAA-ACAAAACCAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTT
1 TTTGAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTT
*
5759146 ATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAATATTT
66 ATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTT
5759197 AAAAAAAAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
116 96 0.87
117 14 0.13
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (117 bp):
TTTGAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTT
ATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTT
Found at i:5759206 original size:116 final size:114
Alignment explanation
Indices: 5758969--5759222 Score: 391
Period size: 116 Copynumber: 2.2 Consensus size: 114
5758959 AGGAGCTTTG
* * *
5758969 AAAAAAAAAACAAAAAAACAAAAACAAAAAAAAGTTGCCTCTATTTAGTGGAGCTTTGTTTATGT
1 AAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTTATGT
**
5759034 TTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTTTTT
66 TTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAA--TTTAA
* * *
5759085 GAAAAAAAAAAACAAAACCAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTTATGT
1 AAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTTATGT
*
5759150 TTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAATATTTAA
66 TTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTAA
*
5759199 AAAAAAAAAAGTAAAAAAACAAAA
1 AAAAAAAAAA-AAAAAAAACAAAA
5759223 GGGGCAAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
114 12 0.10
115 10 0.08
116 102 0.82
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (114 bp):
AAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAATTGCCTCTATTTAGTGGAGCTTTGTTTATGT
TTCTCAAAGTCATTGAGCCTCTGCTTAGAGAGCTTTGATCAAAATTTAA
Found at i:5759449 original size:21 final size:22
Alignment explanation
Indices: 5759377--5759449 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 22
5759367 CAGTTGCAGG
*
5759377 GATTTTTATTCATTTTTGTTTTA-
1 GATTTTTATT-ATTTAT-TTTTAT
*
5759400 GATTTTT-TTATTTCATATTTAT
1 GATTTTTATTATTT-ATTTTTAT
* *
5759422 CAATTTTATT-TTTATTTTTAT
1 GATTTTTATTATTTATTTTTAT
5759443 GATTTTT
1 GATTTTT
5759450 TTTCTTTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
21 20 0.50
22 11 0.28
23 9 0.22
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (22 bp):
GATTTTTATTATTTATTTTTAT
Found at i:5762640 original size:114 final size:115
Alignment explanation
Indices: 5762431--5762642 Score: 302
Period size: 114 Copynumber: 1.8 Consensus size: 115
5762421 GAACTGTAAA
* *
5762431 AAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTTAAAAAAAA
1 AAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTCAAAAATAAATTTTT-AAAAAAA
5762496 ATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
65 ATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
* * * * * *
5762547 AAAAGATA-TTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAGATTAAAATTTTT-AAAAAA
1 AAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTCAAAAAT-AAATTTTTAAAAAAA
* *
5762610 ATATTTTGGGGAAAAGTTGAAGGTATCAATTTT
65 ATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
5762643 CCCTGCACAA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
114 37 0.44
115 33 0.39
116 15 0.18
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (115 bp):
AAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTCAAAAATAAATTTTTAAAAAAAA
TATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
Found at i:5762642 original size:58 final size:57
Alignment explanation
Indices: 5762430--5762642 Score: 275
Period size: 56 Copynumber: 3.7 Consensus size: 57
5762420 GGAACTGTAA
* * ** *
5762430 AAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTT
1 AAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAATTTTT
*
5762488 AAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAA-GTTT
1 --AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAATTTTT
* * * *
5762546 CAAAAGATATTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAGATTAAAATTTTT
1 AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT-AAATTTTT
* *
5762604 AAAAAAATATTTTGGGGAAAAGTTGAAGGTATCAATTTT
1 AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
5762643 CCCTGCACAA
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
56 45 0.33
57 3 0.02
58 40 0.30
59 38 0.28
60 9 0.07
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (57 bp):
AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAATTTTT
Found at i:5764413 original size:19 final size:19
Alignment explanation
Indices: 5764368--5764413 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
5764358 CACACGGTAA
5764368 AGTCTTAAGACTTGGTATC
1 AGTCTTAAGACTTGGTATC
* * *
5764387 AATTTTAAGATTTGGTATC
1 AGTCTTAAGACTTGGTATC
*
5764406 TGTCTTAA
1 AGTCTTAA
5764414 ATATAACTTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.43
Consensus pattern (19 bp):
AGTCTTAAGACTTGGTATC
Found at i:5766573 original size:64 final size:61
Alignment explanation
Indices: 5766449--5766573 Score: 133
Period size: 64 Copynumber: 2.0 Consensus size: 61
5766439 AAATATAAAG
* * ** * * *
5766449 ATTTATTATTTTATATCATAATAAAAATATTTAATTAAAAGGATTTTTTTATATATAAAAT
1 ATTTATTATTTTATATCATAATAAAAATAATTAATTAAAAGAAAATTTTAACATAAAAAAT
* * *
5766510 ATTTATTATCTTTTGTATTATAATAAAAAATAATTAGTTAAAAGAAAATTTTAACATAAAAAAT
1 ATTTATTA--TTTTATATCATAAT-AAAAATAATTAATTAAAAGAAAATTTTAACATAAAAAAT
5766574 TAATAAAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
61 8 0.16
63 12 0.24
64 31 0.61
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (61 bp):
ATTTATTATTTTATATCATAATAAAAATAATTAATTAAAAGAAAATTTTAACATAAAAAAT
Found at i:5774058 original size:301 final size:300
Alignment explanation
Indices: 5773450--5774058 Score: 981
Period size: 301 Copynumber: 2.0 Consensus size: 300
5773440 GATAAGGAAG
* *
5773450 AATCTCATGATATGAGTTGACTTGAAGGCCTTGGGCAGCACGGTTTAATTTCTTACTATTCTTAC
1 AATCTTATGATATGAGTTGACTTCAAGGCCTTGGGCAGCACGGTTTAATTTCTTACTATTCTTAC
* * *
5773515 GTCGGTTGGTCCATGCTTTCGAGTTTCAAGGGCACGAATTAATCCGGTCGAAACTCGAAACCAAC
66 GTCGGTTGGTCCATGCTTTCAAGTTTCAAGGACACGAACTAATCCGGTCGAAACTCGAAACCAAC
* * *
5773580 AAAATATATTTAATTTATATTCTATGATATAGTTTCGGATCCAGCCTGAAAAGAATTTCATTTTA
131 AAAATATATCTAATTTATACTCTATGATATAGTTTCGGATCCAGCCTGAAAAGAATTTCACTTTA
*
5773645 CCATATTCATGACACTAAATATTTTGTTGATAAAACAAAAGAATTTGTGAGTATTGAATTTTAAA
196 -CATATTCATGACACTAAATATTTTGCTGATAAAACAAAAGAATTTGTGAGTATTGAATTTTAAA
** * *
5773710 TTTAAATATATTTTTAAAATAATTATATAAATTAATTAAAG
260 TTTAAATATATCGTAAAAATAATTATATAAATTAATTAAAA
5773751 AATCTTATGATATGAGTTGACTTCAAGGCCTTGGGCAGCACGGTTTAATTTCTTACTATTCTTAC
1 AATCTTATGATATGAGTTGACTTCAAGGCCTTGGGCAGCACGGTTTAATTTCTTACTATTCTTAC
*
5773816 GTCGGTTGGTCCATGCTTTCAAGTTTCAAGGACACGAACTAATCCGGTCGAAACTCGAAATCAAC
66 GTCGGTTGGTCCATGCTTTCAAGTTTCAAGGACACGAACTAATCCGGTCGAAACTCGAAACCAAC
* * *
5773881 AAAATATGTCTAATTTATACTCTATGATATAGTTTCGGATCCCGCTTGAAAAGAA-TTC-CTTT-
131 AAAATATATCTAATTTATACTCTATGATATAGTTTCGGATCCAGCCTGAAAAGAATTTCACTTTA
*
5773943 CATTTTACCATGACACTAAATATTTTGCTGATAAAACAAAAGAATTTGTGAGTATTGAATTTTAA
196 CATATT--CATGACACTAAATATTTTGCTGATAAAACAAAAGAATTTGTGAGTATTGAATTTTAA
*
5774008 ATTTAAATATCTCGTAAAAATAATTATATAAATTAATTGAAATA
259 ATTTAAATATATCGTAAAAATAATTATATAAATTAATT-AAA-A
5774052 AATCTTA
1 AATCTTA
5774059 AATTTTAACT
Statistics
Matches: 285, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
297 5 0.02
299 93 0.33
300 6 0.02
301 181 0.64
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (300 bp):
AATCTTATGATATGAGTTGACTTCAAGGCCTTGGGCAGCACGGTTTAATTTCTTACTATTCTTAC
GTCGGTTGGTCCATGCTTTCAAGTTTCAAGGACACGAACTAATCCGGTCGAAACTCGAAACCAAC
AAAATATATCTAATTTATACTCTATGATATAGTTTCGGATCCAGCCTGAAAAGAATTTCACTTTA
CATATTCATGACACTAAATATTTTGCTGATAAAACAAAAGAATTTGTGAGTATTGAATTTTAAAT
TTAAATATATCGTAAAAATAATTATATAAATTAATTAAAA
Found at i:5780022 original size:22 final size:21
Alignment explanation
Indices: 5779986--5780046 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 21
5779976 TTATTTATTT
5779986 ATATATTTATA-TTTAAAAAATA
1 ATAT-TTTATATTTTAAAAAA-A
5780008 ATATTTTATATTTT-AAAAAA
1 ATATTTTATATTTTAAAAAAA
5780028 ATATTTTATTAATTTTAAA
1 ATATTTTA-T-ATTTTAAA
5780047 TTAAATCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
20 9 0.26
21 12 0.34
22 12 0.34
23 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTTTATATTTTAAAAAAA
Found at i:5787841 original size:15 final size:15
Alignment explanation
Indices: 5787821--5787851 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
5787811 CCGGACCAAC
5787821 TTCCCTTTTCTCTGT
1 TTCCCTTTTCTCTGT
5787836 TTCCCTTTTCTCTGT
1 TTCCCTTTTCTCTGT
5787851 T
1 T
5787852 ACTTGTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.32, G:0.06, T:0.61
Consensus pattern (15 bp):
TTCCCTTTTCTCTGT
Found at i:5788107 original size:2 final size:2
Alignment explanation
Indices: 5788095--5788130 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
5788085 AATTGTCTAC
*
5788095 CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
5788131 TATATATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:5791737 original size:33 final size:35
Alignment explanation
Indices: 5791700--5791778 Score: 90
Period size: 37 Copynumber: 2.3 Consensus size: 35
5791690 TATTTATGAA
*
5791700 TTTAA-TG-AAGAATTAATTATGGTTTTAATTAAT
1 TTTAACTGTAAGAATTAATGATGGTTTTAATTAAT
* * *
5791733 TTTAACTGTTTTAGAATTAATGATTGTTTTAATTAGT
1 TTTAACTG--TAAGAATTAATGATGGTTTTAATTAAT
5791770 TTTAACTGT
1 TTTAACTGT
5791779 TTTAAGACTG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
33 5 0.13
34 2 0.05
35 1 0.03
37 30 0.79
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.52
Consensus pattern (35 bp):
TTTAACTGTAAGAATTAATGATGGTTTTAATTAAT
Found at i:5791749 original size:37 final size:37
Alignment explanation
Indices: 5791708--5791782 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
5791698 AATTTAATGA
*
5791708 AGAATTAATTATGGTTTTAATTAATTTTAACTGTTTT
1 AGAATTAATGATGGTTTTAATTAATTTTAACTGTTTT
* *
5791745 AGAATTAATGATTGTTTTAATTAGTTTTAACTGTTTT
1 AGAATTAATGATGGTTTTAATTAATTTTAACTGTTTT
5791782 A
1 A
5791783 AGACTGGTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (37 bp):
AGAATTAATGATGGTTTTAATTAATTTTAACTGTTTT
Found at i:5793369 original size:22 final size:23
Alignment explanation
Indices: 5793344--5793398 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
5793334 AAAATTTTGA
*
5793344 TATATTTTATATAATTTTAA-AT
1 TATATTTTATATAATTATAATAT
*
5793366 TATATTTAAT-TAATTATAATAT
1 TATATTTTATATAATTATAATAT
*
5793388 TATAATTTATA
1 TATATTTTATA
5793399 GTTCCGACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATATTTTATATAATTATAATAT
Found at i:5793858 original size:22 final size:22
Alignment explanation
Indices: 5793809--5793860 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
5793799 AATATAATTT
*
5793809 TTATTTTTATTAAATTTATATA
1 TTATTTTTATTAAATTTATAAA
*
5793831 TAATTTTTATTAAAATTT-TAAA
1 TTATTTTTATT-AAATTTATAAA
5793853 TTATTTTT
1 TTATTTTT
5793861 TTTTTATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTATTTTTATTAAATTTATAAA
Found at i:5793860 original size:23 final size:22
Alignment explanation
Indices: 5793811--5793861 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
5793801 TATAATTTTT
*
5793811 ATTTTTATTAAATTTATATATA
1 ATTTTTATTAAATTTAAATATA
5793833 ATTTTTATTAAAATTTTAAAT-TA
1 ATTTTTATT-AAA-TTTAAATATA
*
5793856 TTTTTT
1 ATTTTT
5793862 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 9 0.36
23 10 0.40
24 6 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTATTAAATTTAAATATA
Found at i:5804692 original size:22 final size:23
Alignment explanation
Indices: 5804667--5804718 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
5804657 CGTAATTTGC
5804667 ATTTAATAAAT-ATATATTTTTA
1 ATTTAATAAATAATATATTTTTA
* * *
5804689 ATTTAACAAATAATTTTTTTTTA
1 ATTTAATAAATAATATATTTTTA
*
5804712 AATTAAT
1 ATTTAAT
5804719 TATCACTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
ATTTAATAAATAATATATTTTTA
Found at i:5806300 original size:17 final size:17
Alignment explanation
Indices: 5806278--5806310 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5806268 ATTATACTGA
5806278 AAATATTGAAATTAGTG
1 AAATATTGAAATTAGTG
*
5806295 AAATATTTAAATTAGT
1 AAATATTGAAATTAGT
5806311 AGTAATTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
AAATATTGAAATTAGTG
Found at i:5811437 original size:56 final size:56
Alignment explanation
Indices: 5811373--5811483 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
5811363 AGGCCATATA
* *
5811373 AATTTAAATCAATTTAAATTAAAGAATGAAAGACTAACCCTAGAAATTTTAAATCG
1 AATTTAAATCAATTTAAATCAAAGAATGAAAGACTAACCCTAAAAATTTTAAATCG
** *
5811429 AATTTAAATCTGTTTAAATCAAGGAATGAAAGACTAACCCTAAAAATTTTAAATC
1 AATTTAAATCAATTTAAATCAAAGAATGAAAGACTAACCCTAAAAATTTTAAATC
5811484 AAGATAAACG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.31
Consensus pattern (56 bp):
AATTTAAATCAATTTAAATCAAAGAATGAAAGACTAACCCTAAAAATTTTAAATCG
Found at i:5812183 original size:17 final size:18
Alignment explanation
Indices: 5812155--5812202 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
5812145 TATATATAAA
*
5812155 ATATGTATTTTATTATTT
1 ATATATATTTTATTATTT
*
5812173 ATTTA-ATTTTA-TATTT
1 ATATATATTTTATTATTT
5812189 ATATATATTTTATT
1 ATATATATTTTATT
5812203 TAAAATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 9 0.36
17 12 0.48
18 4 0.16
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
ATATATATTTTATTATTT
Found at i:5812296 original size:14 final size:15
Alignment explanation
Indices: 5812271--5812299 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5812261 TTTTATCATT
5812271 TTTTATTTTTTAAAA
1 TTTTATTTTTTAAAA
5812286 TTTTA-TTTTTAAAA
1 TTTTATTTTTTAAAA
5812300 AAGTTTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTATTTTTTAAAA
Found at i:5812300 original size:15 final size:15
Alignment explanation
Indices: 5812271--5812300 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5812261 TTTTATCATT
*
5812271 TTTTATTTTTTAAAA
1 TTTTATTTTTAAAAA
5812286 TTTTATTTTTAAAAA
1 TTTTATTTTTAAAAA
5812301 AGTTTTGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTATTTTTAAAAA
Found at i:5812574 original size:30 final size:30
Alignment explanation
Indices: 5812518--5812589 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
5812508 ATTCAATTTA
5812518 TATTTATATATATTATATTAATAAAAATAT
1 TATTTATATATATTATATTAATAAAAATAT
*
5812548 TATTTA-ATATCTTA-ATTTAATAAAAA-AT
1 TATTTATATATATTATA-TTAATAAAAATAT
5812576 TACATTTATATATA
1 T--ATTTATATATA
5812590 ACAAAATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 4 0.11
29 17 0.47
30 11 0.31
31 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
TATTTATATATATTATATTAATAAAAATAT
Done.