Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 20 of 117
Found at i:5812615 original size:20 final size:20
Alignment explanation
Indices: 5812560--5812616 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
5812550 TTTAATATCT
5812560 TAATTTA-A-TAAAAAATTA
1 TAATTTATATTAAAAAATTA
*
5812578 -CATTTATATATAACAAAATTA
1 TAATTTATAT-TAA-AAAATTA
5812599 TAATTTATATTAAAAAAT
1 TAATTTATATTAAAAAAT
5812617 AAATATACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 5 0.16
18 1 0.03
20 8 0.25
21 10 0.31
22 8 0.25
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATTTATATTAAAAAATTA
Found at i:5813373 original size:28 final size:28
Alignment explanation
Indices: 5813319--5813373 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
5813309 TATTGAAATT
** * *
5813319 TTTTTAATTGCAATTATAATAATTTTTC
1 TTTTTAATCACAATTACAATAACTTTTC
*
5813347 TTTTTAATCACAATTACATTAACTTTT
1 TTTTTAATCACAATTACAATAACTTTT
5813374 ATTATTATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.55
Consensus pattern (28 bp):
TTTTTAATCACAATTACAATAACTTTTC
Found at i:5815693 original size:165 final size:166
Alignment explanation
Indices: 5815421--5815734 Score: 459
Period size: 165 Copynumber: 1.9 Consensus size: 166
5815411 ACTCCTCAAA
* *
5815421 TCAAGTCACTAATAGACTGGAGCCACATCAACTTTACGTGTATTAGAATTCGATCATGGCTGGTA
1 TCAAGTCACTAATAGACTAGAGCCACATCAACTTTACGTATATTAGAATTCGATCATGGCTGGTA
* *
5815486 TGAGGTTTTCACTTCATCATTTATTCATTTTAATTTTTAATTCTTACAATTTGGCCATCATTCAA
66 TGAGGTTTTCACTTAATCATTTATTCATTTTAATTTTTAATTCTTACAATTTGACCATCATTCAA
5815551 CTCA-CATGAATTATATTCAGTATATTCTATTCTAT
131 CTCACCATGAATTATATTCAGTATATTCTATTCTAT
* * * ** * * *
5815586 TCAAGTCATTGATAGACTAGAGCCATATCAGTTTTATGTATATTAGGATTCGTTCATGGCTGGTA
1 TCAAGTCACTAATAGACTAGAGCCACATCAACTTTACGTATATTAGAATTCGATCATGGCTGGTA
* * * *
5815651 TGAGGTTTTTACTTAATTATTTATTCATTTTAATTTTTAATTCTTATAATTTGACCATCATTCAG
66 TGAGGTTTTCACTTAATCATTTATTCATTTTAATTTTTAATTCTTACAATTTGACCATCATTCAA
* *
5815716 CTCACCTTGAATTTTATTC
131 CTCACCATGAATTATATTC
5815735 GATACATAGT
Statistics
Matches: 130, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
165 118 0.91
166 12 0.09
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (166 bp):
TCAAGTCACTAATAGACTAGAGCCACATCAACTTTACGTATATTAGAATTCGATCATGGCTGGTA
TGAGGTTTTCACTTAATCATTTATTCATTTTAATTTTTAATTCTTACAATTTGACCATCATTCAA
CTCACCATGAATTATATTCAGTATATTCTATTCTAT
Found at i:5820224 original size:94 final size:93
Alignment explanation
Indices: 5820115--5820371 Score: 284
Period size: 95 Copynumber: 2.7 Consensus size: 93
5820105 ATAGTAGTGG
* *
5820115 AAGAGGATTGAGATTTATAGGCTTTACATATCTCTTTTTTTGGTTGTTAAGTGATGTAGGATTTA
1 AAGAGGA-TGAGATTTATAGGCTTTACATATCTCTTTTTTTCGTTGTTAAGCGATGTAGGATTTA
5820180 AGAGTTTATGCACAGATGTGCGACAATGA
65 AGAGTTTATGCACAGATGTGCGACAATGA
* * * * *
5820209 AAGAAGATAGAGATTTATAAGCTTTACCTAT-TCTTTCTTTTTTGTTGTTAAGCGATGTGGGATT
1 AAGAGGAT-GAGATTTATAGGCTTTACATATCTC-TT-TTTTTCGTTGTTAAGCGATGTAGGATT
* * * *
5820273 TAAGAGTTTATGCATAGATGTGTGGCAATGG
63 TAAGAGTTTATGCACAGATGTGCGACAATGA
* * * * * * *
5820304 AAGAGGATGTGAATATATAGG-TTGTACTTATCCCTTCTTTTCGTTATTAAGCGATGTAGGATTC
1 AAGAGGATGAG-ATTTATAGGCTT-TACATATCTCTTTTTTTCGTTGTTAAGCGATGTAGGATTT
5820368 AAGA
64 AAGA
5820372 TGTATAGCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
93 3 0.02
94 59 0.43
95 73 0.54
96 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (93 bp):
AAGAGGATGAGATTTATAGGCTTTACATATCTCTTTTTTTCGTTGTTAAGCGATGTAGGATTTAA
GAGTTTATGCACAGATGTGCGACAATGA
Found at i:5820686 original size:15 final size:16
Alignment explanation
Indices: 5820666--5820699 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
5820656 TCTATGTCAT
*
5820666 ATATAATTTTTA-ATG
1 ATATAAATTTTATATG
5820681 ATATAAATTTTATATG
1 ATATAAATTTTATATG
5820697 ATA
1 ATA
5820700 ATTTATGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (16 bp):
ATATAAATTTTATATG
Found at i:5828965 original size:16 final size:16
Alignment explanation
Indices: 5828916--5828967 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
5828906 TTTGAACTTG
5828916 TTATAATA-AATATTAAT
1 TTATAATATAA-A-TAAT
*
5828933 TTGAAAATATAAA-AAT
1 TT-ATAATATAAATAAT
5828949 TTATAATATAAATAAT
1 TTATAATATAAATAAT
5828965 TTA
1 TTA
5828968 AATTTTAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 9 0.30
16 11 0.37
17 2 0.07
18 6 0.20
19 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
TTATAATATAAATAAT
Found at i:5830636 original size:40 final size:40
Alignment explanation
Indices: 5830582--5830669 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
5830572 TTTATTTTTT
* * * *
5830582 TCATATTTTCAACAAATACTACATTTTTATTTTAGAAAA-G
1 TCATCTTTTCAACAAAAACTACATTTTTATCTTA-AAAACA
* *
5830622 TCATCTTTTTAACAAAAATTACATTTTTATCTTAAAAACA
1 TCATCTTTTCAACAAAAACTACATTTTTATCTTAAAAACA
5830662 TCATCTTT
1 TCATCTTT
5830670 ATTGAATTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.10
40 37 0.90
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (40 bp):
TCATCTTTTCAACAAAAACTACATTTTTATCTTAAAAACA
Found at i:5830852 original size:112 final size:109
Alignment explanation
Indices: 5830574--5830912 Score: 301
Period size: 111 Copynumber: 3.1 Consensus size: 109
5830564 ATTTTATTTT
* * * * * * *
5830574 TATTTTTTTCATATTTTCAACAAATACTACATTTTTAT-TTTAGAAAAGTCATCTTTTTAACAAA
1 TATTTTTTTTAT-TTTTGAACAAAAACTGCTTTTTTATCTTTA-AAATGTCATCTTTTAAACAAA
* * * * *
5830638 AATTACATTTTTATCTTAAAAACATCATCTTTATTGAATTCTG-AAAA
64 AACT-CATTTTTAT-TTTAGAACATCGTCTTTGTTGAATTCTGAAAAA
* * * * * * * *
5830685 TATATATTTTTATTTTTTAACAAAAATTGCTTTTTTATCTTAAAAATGTCTTCTTTTCAAGAAAG
1 TAT-TTTTTTTATTTTTGAACAAAAACTGCTTTTTTATCTTTAAAATGTCATCTTTTAAACAAAA
* *
5830750 ACTGCATTTTTATTTTAGAAGCATCGTTTTTGTTGAGTTCTGAAAAA
65 ACT-CATTTTTATTTTAGAA-CATCGTCTTTGTTGAATTCTGAAAAA
* *
5830797 TATTTTTTTTATGTTTTGAATAAAGACTG-TGTTTTTATCTTTAAAATGTCATCTTTTAAACAAA
1 TATTTTTTTTAT-TTTTGAACAAAAACTGCT-TTTTTATCTTTAAAATGTCATCTTTTAAACAAA
* * *
5830861 AACT-AGTTTTCTATTTTAGAA-ATTGTCTTTGTTTAATTTTGAAAAA
64 AACTCA-TTTT-TATTTTAGAACATCGTCTTTGTTGAATTCTGAAAAA
5830907 TATTTT
1 TATTTT
5830913 CATGTTTTTA
Statistics
Matches: 184, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
110 32 0.17
111 81 0.44
112 71 0.39
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (109 bp):
TATTTTTTTTATTTTTGAACAAAAACTGCTTTTTTATCTTTAAAATGTCATCTTTTAAACAAAAA
CTCATTTTTATTTTAGAACATCGTCTTTGTTGAATTCTGAAAAA
Found at i:5831105 original size:70 final size:73
Alignment explanation
Indices: 5830963--5831105 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 73
5830953 AGAAGCATTA
* * *
5830963 TCTTTGTTAAATTTTGAAAAAAATATTTTTTTATATTTTCAATAAAAATTACGTTTTCTATCTTA
1 TCTTTGTTAAATTTT-AAAAAAATATTTCTTTATATTTTCAACAAAAATTACATTTTCTATCTTA
5831028 GAAATGTCG
65 GAAATGTCG
* * *
5831037 TCTTTGTTAAATTTT-AAAAGATA-TTCTTTATATTTTCAACAAATATTATATTTT-TATCTTAG
1 TCTTTGTTAAATTTTAAAAAAATATTTCTTTATATTTTCAACAAAAATTACATTTTCTATCTTAG
5831099 AAATGTC
66 AAATGTC
5831106 CATGAATCCA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
70 15 0.24
71 26 0.41
72 7 0.11
74 15 0.24
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.50
Consensus pattern (73 bp):
TCTTTGTTAAATTTTAAAAAAATATTTCTTTATATTTTCAACAAAAATTACATTTTCTATCTTAG
AAATGTCG
Found at i:5833446 original size:22 final size:23
Alignment explanation
Indices: 5833398--5833447 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
5833388 TTAAAAAATG
* **
5833398 ATACATGGTAGTCATATTATTGT
1 ATACATGATAGTCATATTATCAT
5833421 -TACATGATAGTCATA-TATCAT
1 ATACATGATAGTCATATTATCAT
5833442 ATACAT
1 ATACAT
5833448 CAGTATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (23 bp):
ATACATGATAGTCATATTATCAT
Found at i:5833909 original size:17 final size:17
Alignment explanation
Indices: 5833889--5833921 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5833879 CTTTAAATTA
5833889 ATTTTTTTTTTCAAAAC
1 ATTTTTTTTTTCAAAAC
*
5833906 ATTTTTTTTTTTAAAA
1 ATTTTTTTTTTCAAAA
5833922 ACAAAATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTTTTTTCAAAAC
Found at i:5833911 original size:18 final size:18
Alignment explanation
Indices: 5833890--5833924 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5833880 TTTAAATTAA
*
5833890 TTTTTTTTTTCAAAACAT
1 TTTTTTTTTTAAAAACAT
5833908 TTTTTTTTTTAAAAACA
1 TTTTTTTTTTAAAAACA
5833925 AAATCACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTTTTTTAAAAACAT
Found at i:5851346 original size:24 final size:25
Alignment explanation
Indices: 5851307--5851359 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
5851297 AAAAAACACT
5851307 TAAA-TTTTATTATTTTATT-TAGA
1 TAAATTTTTATTATTTTATTATAGA
*
5851330 TAAATTTTTA-TACTTTTATTATAGT
1 TAAATTTTTATTA-TTTTATTATAGA
5851355 TAAAT
1 TAAAT
5851360 AAATCCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 12 0.46
25 8 0.31
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (25 bp):
TAAATTTTTATTATTTTATTATAGA
Found at i:5851405 original size:30 final size:30
Alignment explanation
Indices: 5851348--5851405 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
5851338 TATACTTTTA
* * *
5851348 TTATAGTTAAATAAATCCTTAATTTTTATG
1 TTATACTTAAATAAATACTTAAATTTTATG
* *
5851378 TTATACTTAAATATATATTTAAATTTTA
1 TTATACTTAAATAAATACTTAAATTTTA
5851406 ATTTGTATCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (30 bp):
TTATACTTAAATAAATACTTAAATTTTATG
Found at i:5851431 original size:24 final size:23
Alignment explanation
Indices: 5851397--5851454 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
5851387 AATATATATT
*
5851397 TAAA-TTTTAATTTGTATCTAAA
1 TAAATTTTTAATTTGTATATAAA
5851419 TAAAATTTTTAATTTGTATATAAA
1 T-AAATTTTTAATTTGTATATAAA
*
5851443 TAAATTATTAAT
1 TAAATTTTTAAT
5851455 ATAAATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 1 0.03
23 13 0.41
24 18 0.56
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (23 bp):
TAAATTTTTAATTTGTATATAAA
Found at i:5866430 original size:2 final size:2
Alignment explanation
Indices: 5866423--5866465 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
5866413 TGAAAGGTAA
5866423 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
5866465 A
1 A
5866466 AGAAATGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5872086 original size:72 final size:72
Alignment explanation
Indices: 5872007--5872176 Score: 196
Period size: 72 Copynumber: 2.4 Consensus size: 72
5871997 GCACAATGGG
* * * *
5872007 TCCTGGGGAACCACCTCTATAGGTCTGCGCAAGGTCTCCCGGGGAAGTAAGTCAATAGGTCTGCG
1 TCCTGGGGAACCAACTCAATAGGTCTGCGCAAAGTCTCCCGGGGAAGCAAGTCAATAGGTCTGCG
5872072 CAAAGTC
66 CAAAGTC
** * * ** * *
5872079 TCCTGGGGAAGTAAGTCAATAGGTCTGTGCAAAGTCTCCTTGGGAAGCAAGTCAATTGGTCTGTG
1 TCCTGGGGAACCAACTCAATAGGTCTGCGCAAAGTCTCCCGGGGAAGCAAGTCAATAGGTCTGCG
5872144 CAAAGTC
66 CAAAGTC
** **
5872151 TCCTCAGGAAGTAACTCAATAGGTCT
1 TCCTGGGGAACCAACTCAATAGGTCT
5872177 ATGTAAAGTC
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 83 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (72 bp):
TCCTGGGGAACCAACTCAATAGGTCTGCGCAAAGTCTCCCGGGGAAGCAAGTCAATAGGTCTGCG
CAAAGTC
Found at i:5872185 original size:36 final size:36
Alignment explanation
Indices: 5872025--5872188 Score: 213
Period size: 36 Copynumber: 4.6 Consensus size: 36
5872015 AACCACCTCT
* *
5872025 ATAGGTCTGCGCAAGGTCTCC-CGGGGAAGTAAGTCA
1 ATAGGTCTGTGCAAAGTCTCCTC-GGGAAGTAAGTCA
* *
5872061 ATAGGTCTGCGCAAAGTCTCCTGGGGAAGTAAGTCA
1 ATAGGTCTGTGCAAAGTCTCCTCGGGAAGTAAGTCA
* *
5872097 ATAGGTCTGTGCAAAGTCTCCTTGGGAAGCAAGTCA
1 ATAGGTCTGTGCAAAGTCTCCTCGGGAAGTAAGTCA
* * *
5872133 ATTGGTCTGTGCAAAGTCTCCTCAGGAAGTAACTCA
1 ATAGGTCTGTGCAAAGTCTCCTCGGGAAGTAAGTCA
* *
5872169 ATAGGTCTATGTAAAGTCTC
1 ATAGGTCTGTGCAAAGTCTC
5872189 TGGCAGAACT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
36 114 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (36 bp):
ATAGGTCTGTGCAAAGTCTCCTCGGGAAGTAAGTCA
Found at i:5877802 original size:25 final size:23
Alignment explanation
Indices: 5877771--5877842 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 23
5877761 TAATAACAAC
5877771 AATTATTATAATTATTATTAAAA
1 AATTATTATAATTATTATTAAAA
* *
5877794 ATATTTATTGTAATTATAATTGAAAA
1 A-A-TTATTATAATTATTATT-AAAA
*
5877820 AATTATAAATAATT-TTATTAAAA
1 AATTAT-TATAATTATTATTAAAA
5877843 TTAATATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
23 5 0.12
24 9 0.22
25 21 0.52
26 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (23 bp):
AATTATTATAATTATTATTAAAA
Found at i:5877869 original size:20 final size:21
Alignment explanation
Indices: 5877844--5877882 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
5877834 TTATTAAAAT
5877844 TAATATT-TAAATTTAACTGA
1 TAATATTATAAATTTAACTGA
*
5877864 TAATATTATAAGTTTAACT
1 TAATATTATAAATTTAACT
5877883 TCATCAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (21 bp):
TAATATTATAAATTTAACTGA
Found at i:5886877 original size:119 final size:121
Alignment explanation
Indices: 5886628--5886878 Score: 282
Period size: 119 Copynumber: 2.1 Consensus size: 121
5886618 AATATTATTG
**
5886628 TTATTATTTT-TATGTTTGAAAAATTCTAAAATATTTTCAACACATTTTAGAAAATTTTAGAAAT
1 TTATTATTTTATATACTTGAAAAATTCTAAAATATTTTCAACACATTTTAGAAAATTTTAGAAAT
* * * * * * * *
5886692 TTTTTTGTTTAAATATTTTTATTAAAATCACTATTTGTGATTTTATTTTTTTATTTT
66 TTTTTTATGTAAATATTTTTAATAAAATCACCACTTGTGACTTCA-TTTGTTATTTT
* * *
5886749 TTATT-TTTTATATACTTG-AAAATTCTAAAATA-TTTCTAATA-TTTTTAGAATATTTTA-AAA
1 TTATTATTTTATATACTTGAAAAATTCTAAAATATTTTC-AACACATTTTAGAAAATTTTAGAAA
* *
5886809 TTTTATTTATGTGAATATTTTTAATAAAGTCACCACTTGTGACTTCA-TTGTTATTTT
65 TTTT-TTTATGTAAATATTTTTAATAAAATCACCACTTGTGACTTCATTTGTTATTTT
5886866 ATTATTATTTTAT
1 -TTATTATTTTAT
5886879 TATTTTTTGT
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
117 9 0.08
118 12 0.11
119 57 0.52
120 21 0.19
121 11 0.10
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (121 bp):
TTATTATTTTATATACTTGAAAAATTCTAAAATATTTTCAACACATTTTAGAAAATTTTAGAAAT
TTTTTTATGTAAATATTTTTAATAAAATCACCACTTGTGACTTCATTTGTTATTTT
Found at i:5889027 original size:73 final size:73
Alignment explanation
Indices: 5888904--5889113 Score: 190
Period size: 73 Copynumber: 2.8 Consensus size: 73
5888894 AATTTTGAAT
* * * * ** *
5888904 ATATATTTTTTTTCATAATTTT-AACAAAGATTATGATTTCTATCTTAAAAATGTTATCTTTATT
1 ATATA-TTTTTTT-AT-ATTTTCAACAAAAACTA-CATTTTTATCTTAAAAACATCATCTTTATT
*
5888968 -GAATTTTAAAAA
62 AG-ATTCTAAAAA
* *
5888980 ATATATTTTTTTATATTTTCAATAAAAACTACATTTTTTTCTTAAAAACATCATCTTTATTAGAT
1 ATATATTTTTTTATATTTTCAACAAAAACTACATTTTTATCTTAAAAACATCATCTTTATTAGAT
5889045 TCTAAAAA
66 TCTAAAAA
* * * * * * * * *
5889053 TTATATTTTTTTCTTTTTTTAGCAAAAACTATATTTTTATCTTAAAACCATCGTTTTTATT
1 ATATATTTTTTTATATTTTCAACAAAAACTACATTTTTATCTTAAAAACATCATCTTTATT
5889114 GATGAAAACT
Statistics
Matches: 111, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
73 88 0.79
74 11 0.10
75 7 0.06
76 5 0.05
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (73 bp):
ATATATTTTTTTATATTTTCAACAAAAACTACATTTTTATCTTAAAAACATCATCTTTATTAGAT
TCTAAAAA
Found at i:5889275 original size:115 final size:114
Alignment explanation
Indices: 5889156--5889393 Score: 266
Period size: 116 Copynumber: 2.1 Consensus size: 114
5889146 AAGATTGCAT
* * * * *
5889156 TTTTTATCTTAGAAACGTTGTGTTTATTAAATTTTTTAAAA-A-ATATTTTTTCATGTT-TTCTA
1 TTTTTATCTTAGAAACGTTATGTTTATTAAATTCTATAAAATATATATTTTTT-ATGTTAAT-AA
** * *
5889218 CAAAGAATGTGTTTTTATTTTAGAAACATTATCTTTTCAATAAAAACTACA
64 CAAAGAATGCATTTTTATCTTAGAAACATCATCTTTTCAATAAAAACTACA
* * * *
5889269 TCTTTTTATCTTAGAAATGTTATTTTTGTTGAATTCTATAAAATATATATTTTTTATGTTAATAA
1 --TTTTTATCTTAGAAACGTTATGTTTATTAAATTCTATAAAATATATATTTTTTATGTTAATAA
* * * *
5889334 CAAATACTGCATTTTTATCTTAGAAATATCATCTTTTCAATAAAAATTACA
64 CAAAGAATGCATTTTTATCTTAGAAACATCATCTTTTCAATAAAAACTACA
5889385 TTTTTATCT
1 TTTTTATCT
5889394 GAAAAGCATC
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
114 9 0.09
115 34 0.33
116 50 0.49
117 10 0.10
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (114 bp):
TTTTTATCTTAGAAACGTTATGTTTATTAAATTCTATAAAATATATATTTTTTATGTTAATAACA
AAGAATGCATTTTTATCTTAGAAACATCATCTTTTCAATAAAAACTACA
Found at i:5894082 original size:2 final size:2
Alignment explanation
Indices: 5894075--5894116 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
5894065 TAGCCTAAAT
5894075 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
5894117 CAAATGATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5895013 original size:15 final size:15
Alignment explanation
Indices: 5894987--5895020 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
5894977 TCATCTGCAC
*
5894987 CATCATCATCTTCAT
1 CATCACCATCTTCAT
*
5895002 CATCACCATCTTCTT
1 CATCACCATCTTCAT
5895017 CATC
1 CATC
5895021 TTCAGTACTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (15 bp):
CATCACCATCTTCAT
Found at i:5895563 original size:37 final size:34
Alignment explanation
Indices: 5895476--5895544 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
5895466 CTTTCATACA
5895476 CCAATAAAGAATTATCAAAACAGAAAAAAAATGC
1 CCAATAAAGAATTATCAAAACAGAAAAAAAATGC
5895510 CCAATAAAGAATTATCAAAACAGAAAAAAAATGC
1 CCAATAAAGAATTATCAAAACAGAAAAAAAATGC
5895544 C
1 C
5895545 AGCTCAAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.61, C:0.16, G:0.09, T:0.14
Consensus pattern (34 bp):
CCAATAAAGAATTATCAAAACAGAAAAAAAATGC
Found at i:5896044 original size:2 final size:2
Alignment explanation
Indices: 5896003--5896031 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
5895993 CATACAAATG
5896003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5896032 GGTACATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5897889 original size:34 final size:34
Alignment explanation
Indices: 5897831--5897904 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
5897821 AATTTCTTAG
* * *
5897831 ATATTCATTTTTGAAAAGTCTCAAAGT-TTCTCAA
1 ATATTTATTTCTGAAAAGTCTCAAA-TCTTATCAA
5897865 ATATTTATTTCTGAAAAGAT-TCAAATCTTATCAA
1 ATATTTATTTCTGAAAAG-TCTCAAATCTTATCAA
5897899 ATATTT
1 ATATTT
5897905 CAAAATTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 1 0.03
34 33 0.94
35 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (34 bp):
ATATTTATTTCTGAAAAGTCTCAAATCTTATCAA
Found at i:5897983 original size:34 final size:33
Alignment explanation
Indices: 5897907--5897986 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
5897897 AAATATTTCA
*
5897907 AAATTTCTTAGATATTCATTTTCGAAAAGTCTC
1 AAATTTCTTAGATATTCATTTTCGAAAAGACTC
* *
5897940 AAAGTTTCTTAGATATTCATTTT-TAAACAGACTT
1 AAA-TTTCTTAGATATTCATTTTCGAAA-AGACTC
5897974 AAATCTTCTTAGA
1 AAAT-TTCTTAGA
5897987 AATGATTACC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
33 7 0.17
34 34 0.83
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (33 bp):
AAATTTCTTAGATATTCATTTTCGAAAAGACTC
Found at i:5898810 original size:7 final size:7
Alignment explanation
Indices: 5898798--5898824 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
5898788 CTTTTAGATA
5898798 ATTTGAC
1 ATTTGAC
5898805 ATTTGAC
1 ATTTGAC
5898812 ATTTGAC
1 ATTTGAC
5898819 ATTTGA
1 ATTTGA
5898825 ACCCATTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (7 bp):
ATTTGAC
Found at i:5915655 original size:22 final size:20
Alignment explanation
Indices: 5915618--5915664 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
5915608 AAAGCTTTGC
*
5915618 TTCTCTTCTATTCTTC-CATT
1 TTCTCTTCAATTCTTCAC-TT
5915638 TTCTCTCTCAATTCCTTCACTT
1 TTCTCT-TCAATT-CTTCACTT
5915660 TTCTC
1 TTCTC
5915665 CATTTCTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.26
21 5 0.22
22 11 0.48
23 1 0.04
ACGTcount: A:0.11, C:0.34, G:0.00, T:0.55
Consensus pattern (20 bp):
TTCTCTTCAATTCTTCACTT
Found at i:5920192 original size:3 final size:3
Alignment explanation
Indices: 5920186--5920229 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
5920176 TCTCATCATA
5920186 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
5920230 AAGCATTCAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:5923982 original size:22 final size:22
Alignment explanation
Indices: 5923957--5923999 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
5923947 TAATAATAAT
5923957 AAAAAGTAAAAAAAAAAAGAGA
1 AAAAAGTAAAAAAAAAAAGAGA
* **
5923979 AAAAAGTGAATGAAAAAAGAG
1 AAAAAGTAAAAAAAAAAAGAG
5924000 GACTCAAGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (22 bp):
AAAAAGTAAAAAAAAAAAGAGA
Found at i:5925041 original size:41 final size:41
Alignment explanation
Indices: 5924996--5925162 Score: 219
Period size: 41 Copynumber: 4.0 Consensus size: 41
5924986 ATTGTCAATT
* *
5924996 AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGG
* *
5925037 AGCAATTTACTTTTCAAAGTCGTTGTGCCTCTGTTTAAAGG
1 AGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGG
* * *
5925078 AGCAATTTATTTTTCCAAAGTCGTTGAGCC-ATGATTAGAGG
1 AGCAATTTACTTTT-CAAAGTCGTTGAGCCTCTGTTTAGAGG
* * *
5925119 AGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGG
1 AGCAATTTA-CTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGG
5925161 AG
1 AG
5925163 TTTTGATCAG
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
41 83 0.73
42 30 0.27
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (41 bp):
AGCAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGG
Found at i:5925150 original size:83 final size:82
Alignment explanation
Indices: 5924996--5925162 Score: 219
Period size: 83 Copynumber: 2.0 Consensus size: 82
5924986 ATTGTCAATT
* * *
5924996 AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTT
1 AGCAATTTACTTTTCAAAGTCGTGGAGCCTATGATTAGAGGAGCAATTTACTTTTCAAAGTCGTT
* *
5925061 GTGCCTCTGTTTAAAGG
66 GAGCCTCTGCTTAAAGG
* * * *
5925078 AGCAATTTATTTTTCCAAAGTCGTTGAGCC-ATGATTAGAGGAGCCATTTATTTTTTCAAAGTCG
1 AGCAATTTACTTTT-CAAAGTCGTGGAGCCTATGATTAGAGGAGCAATTTA-CTTTTCAAAGTCG
*
5925142 TTGAGCCTCTGCTTAGAGG
64 TTGAGCCTCTGCTTAAAGG
5925161 AG
1 AG
5925163 TTTTGATCAG
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
82 30 0.41
83 43 0.59
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (82 bp):
AGCAATTTACTTTTCAAAGTCGTGGAGCCTATGATTAGAGGAGCAATTTACTTTTCAAAGTCGTT
GAGCCTCTGCTTAAAGG
Found at i:5925367 original size:6 final size:6
Alignment explanation
Indices: 5925324--5925423 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
5925314 AATAGGTAAG
* *
5925324 TTTA-T TTTCTT TTT-TT TTTATTT TTGTATT TTACATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTA-TT TT-TATT TT-TATT TTTATT TTTATT
* * * * *
5925373 TTTATT TCTATT ATTATT ATTGTT TTTATAT ATTT-TT TATATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTAT-T -TTTATT TTTATT TTTATT
5925422 TT
1 TT
5925424 ATGTATTTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
5 10 0.13
6 46 0.61
7 15 0.20
8 5 0.07
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:5925415 original size:25 final size:25
Alignment explanation
Indices: 5925358--5925437 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 25
5925348 TGTATTTTAC
*
5925358 ATTTTTATTTTTATTTT-TAT-TTCT
1 ATTTATATTTTTATTTTATATATT-T
5925382 A-TTATTATTATTGT-TTTTATATATTT
1 ATTTA-TATT-TT-TATTTTATATATTT
*
5925408 -TTTATATTTTTATTTTATGTATTT
1 ATTTATATTTTTATTTTATATATTT
5925432 ATTTAT
1 ATTTAT
5925438 TCATTACTAC
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
23 3 0.07
24 18 0.39
25 15 0.33
26 8 0.17
27 2 0.04
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.74
Consensus pattern (25 bp):
ATTTATATTTTTATTTTATATATTT
Found at i:5925543 original size:22 final size:21
Alignment explanation
Indices: 5925518--5925580 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
5925508 TTATATGTTA
5925518 TAATTTATCTGTT-ATTTAATTT
1 TAATTTATCTGTTAATTT--TTT
*
5925540 TAATTTATGTGTTAATTTTTT
1 TAATTTATCTGTTAATTTTTT
* *
5925561 TGATTTATCTGATTTATTTT
1 TAATTTATCTG-TTAATTTT
5925581 CATTAATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 12 0.34
22 19 0.54
23 4 0.11
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (21 bp):
TAATTTATCTGTTAATTTTTT
Found at i:5925895 original size:15 final size:14
Alignment explanation
Indices: 5925857--5925906 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
5925847 TAGGAATTAG
5925857 GGAAATTTTTTT-T
1 GGAAATTTTTTTCT
* * *
5925870 GGAGATTTTTCTAT
1 GGAAATTTTTTTCT
5925884 -GAAATTTTTTTCT
1 GGAAATTTTTTTCT
5925897 GGAAATTTTT
1 GGAAATTTTT
5925907 GAAAAATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 20 0.67
14 10 0.33
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (14 bp):
GGAAATTTTTTTCT
Found at i:5925913 original size:25 final size:26
Alignment explanation
Indices: 5925859--5925916 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
5925849 GGAATTAGGG
* * *
5925859 AAATTTTTTTTGGAGATTTTTCTATG
1 AAATTTTTTTTGGAAATTTTTCGATA
5925885 AAATTTTTTTCTGGAAATTTTT-GA-A
1 AAATTTTTTT-TGGAAATTTTTCGATA
5925910 AAATTTT
1 AAATTTT
5925917 CAGGATTCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 7 0.25
26 11 0.39
27 10 0.36
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.55
Consensus pattern (26 bp):
AAATTTTTTTTGGAAATTTTTCGATA
Found at i:5926403 original size:6 final size:6
Alignment explanation
Indices: 5926380--5926420 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
5926370 TTATTTAATA
* *
5926380 TATTTT TATCTT TA-TTT TATTTT TATTTT TATTTT TGTTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
5926421 ACCTTTCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:5926410 original size:23 final size:22
Alignment explanation
Indices: 5926381--5926468 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 22
5926371 TATTTAATAT
*
5926381 ATTTTTATCTTTATTTTATTTTT
1 ATTTTTATTTTTATTTTA-TTTT
* **
5926404 ATTTTTATTTTTGTTTTACCTT
1 ATTTTTATTTTTATTTTATTTT
*
5926426 -TCTTTATTTTT-TATTT-TTTT
1 ATTTTTATTTTTAT-TTTATTTT
5926446 ATTTTGT-TTTATTATTTTATTTT
1 ATTTT-TATTT-TTATTTTATTTT
5926469 CTTTAAATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
20 3 0.06
21 19 0.37
22 8 0.16
23 21 0.41
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (22 bp):
ATTTTTATTTTTATTTTATTTT
Found at i:5926411 original size:17 final size:17
Alignment explanation
Indices: 5926380--5926468 Score: 71
Period size: 17 Copynumber: 5.4 Consensus size: 17
5926370 TTATTTAATA
5926380 TATTTTTATCTTTATTT
1 TATTTTTATCTTTATTT
*
5926397 TATTTTTATTTTTATTT
1 TATTTTTATCTTTATTT
* *
5926414 T-TGTTTTACCTTT-CTT
1 TAT-TTTTATCTTTATTT
*
5926430 TATTTTT-TATTT-TTT
1 TATTTTTATCTTTATTT
*
5926445 TATTTTGT-TTTATTATTT
1 TATTTT-TATCT-TTATTT
5926463 TATTTT
1 TATTTT
5926469 CTTTAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
15 11 0.19
16 11 0.19
17 28 0.47
18 9 0.15
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (17 bp):
TATTTTTATCTTTATTT
Found at i:5926455 original size:13 final size:13
Alignment explanation
Indices: 5926390--5926473 Score: 57
Period size: 13 Copynumber: 6.3 Consensus size: 13
5926380 TATTTTTATC
5926390 TTTATTTTA--TT
1 TTTATTTTATTTT
*
5926401 TTTATTTT-TATT
1 TTTATTTTATTTT
*
5926413 TTTGTTTTACCTTTCT
1 TTTATTTTA--TTT-T
*
5926429 TTATTTTTTATTTT
1 TT-TATTTTATTTT
*
5926443 TTTATTTTGTTTT
1 TTTATTTTATTTT
*
5926456 ATTATTTTATTTT
1 TTTATTTTATTTT
5926469 CTTTA
1 -TTTA
5926474 AATAAAATCC
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
11 8 0.14
12 9 0.16
13 20 0.35
14 6 0.11
15 5 0.09
16 3 0.05
17 6 0.11
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:5926457 original size:18 final size:18
Alignment explanation
Indices: 5926390--5926468 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
5926380 TATTTTTATC
* *
5926390 TTTATTTTATTTT-TATT
1 TTTATTTTGTTTTATTTT
*
5926407 TTTATTTTTGTTTTACCTTTC
1 TTTA-TTTTGTTTTA--TTTT
5926428 TTTA--TT-TTTTATTTT
1 TTTATTTTGTTTTATTTT
*
5926443 TTTATTTTGTTTTATTAT
1 TTTATTTTGTTTTATTTT
5926461 TTTATTTT
1 TTTATTTT
5926469 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
15 7 0.14
17 11 0.22
18 26 0.52
21 6 0.12
ACGTcount: A:0.14, C:0.04, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTATTTTGTTTTATTTT
Found at i:5926524 original size:56 final size:55
Alignment explanation
Indices: 5926464--5926587 Score: 131
Period size: 57 Copynumber: 2.2 Consensus size: 55
5926454 TTATTATTTT
* * *
5926464 ATTTTCTTTAAATAAAATCCAAAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCA
1 ATTTTCTTTAAATAAAATCCAAAAAAAA-ATGTTTGAAGAAAAGTTGAAAGTATCA
* * *** *
5926520 ATTTTTCTTAAAAATAAATTTTTAAAAAAAGTGTTTGAAGAAAAGTTGAAAGTATCA
1 A-TTTTCTT-TAAATAAAATCCAAAAAAAAATGTTTGAAGAAAAGTTGAAAGTATCA
*
5926577 ATTTTCCTTAA
1 ATTTTCTTTAA
5926588 GTATCAATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
55 2 0.04
56 7 0.13
57 31 0.56
58 15 0.27
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (55 bp):
ATTTTCTTTAAATAAAATCCAAAAAAAAATGTTTGAAGAAAAGTTGAAAGTATCA
Found at i:5926563 original size:57 final size:55
Alignment explanation
Indices: 5926502--5926887 Score: 256
Period size: 59 Copynumber: 6.4 Consensus size: 55
5926492 TATTTTTTAG
5926502 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAAAAGTGTTTGAA
1 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAAAA-T-TTTGAA
* ** * *
5926559 GAAAAGTTGAAAGTATCAATTTTCCTTAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTT--TT-AAAA-AAATTTT----GAA
* *
5926623 GGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTTCAAAAAAGGTTTTTG
1 -------GAA---AAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAAA--ATTTTG
*
5926687 AG
54 AA
*
5926689 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAATTTTTTTTTAAAAACAATTTT-AA
1 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA---ATTTTTAAAAA-AATTTTGAA
* * * **
5926747 GGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAGGTTTCCAAAAAAATATTTTTTGAA
1 -GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA-ATTT-TTAAAAAA-A--TTTTGAA
* ** * * *
5926808 -AAAAGTTGAAAGTATCAATTTTCCTCGAGATTAAAATTTTTAAAAAATATTTTGGA
1 GAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTTTAAAAAA-ATTTTGAA
5926864 GAAAAGTTGAAAGTATCAATTTTT
1 GAAAAGTTGAAAGTATCAATTTTT
5926888 TCTGCATAAA
Statistics
Matches: 264, Mismatches: 31, Indels: 68
0.73 0.09 0.19
Matches are distributed among these distances:
56 38 0.14
57 56 0.21
58 20 0.08
59 72 0.27
60 19 0.07
61 8 0.03
62 3 0.01
64 2 0.01
66 1 0.00
68 2 0.01
69 4 0.02
70 5 0.02
71 3 0.01
72 2 0.01
73 2 0.01
74 27 0.10
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (55 bp):
GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAAAATTTTGAA
Found at i:5926591 original size:17 final size:17
Alignment explanation
Indices: 5926569--5926604 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
5926559 GAAAAGTTGA
5926569 AAGTATCAATTTTCCTT
1 AAGTATCAATTTTCCTT
5926586 AAGTATCAATTTTCCTT
1 AAGTATCAATTTTCCTT
5926603 AA
1 AA
5926605 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (17 bp):
AAGTATCAATTTTCCTT
Found at i:5926591 original size:74 final size:74
Alignment explanation
Indices: 5926512--5926661 Score: 255
Period size: 74 Copynumber: 2.0 Consensus size: 74
5926502 GAAAAGTTGA
* *
5926512 AAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAAAAGTGTTTGAAGAAAAGTTGAAAGTATCA
1 AAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGTGTTTGAAGAAAAGTTGAAAGTATCA
5926577 ATTTTCCTT
66 ATTTTCCTT
* *
5926586 AAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGTTTTTGAAGAAAAGTTGAAAGTATCA
1 AAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGTGTTTGAAGAAAAGTTGAAAGTATCA
*
5926651 ATTTTTCTT
66 ATTTTCCTT
5926660 AA
1 AA
5926662 AAATAAATTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (74 bp):
AAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGTGTTTGAAGAAAAGTTGAAAGTATCA
ATTTTCCTT
Found at i:5926613 original size:17 final size:17
Alignment explanation
Indices: 5926576--5926616 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
5926566 TGAAAGTATC
** *
5926576 AATTTTCCTTAAGTATC
1 AATTTTCCTTAAAAATA
5926593 AATTTTCCTTAAAAATA
1 AATTTTCCTTAAAAATA
5926610 AATTTTC
1 AATTTTC
5926617 AAAAAAGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.46
Consensus pattern (17 bp):
AATTTTCCTTAAAAATA
Found at i:5926699 original size:56 final size:55
Alignment explanation
Indices: 5926586--5926887 Score: 289
Period size: 59 Copynumber: 5.3 Consensus size: 55
5926576 AATTTTCCTT
* *
5926586 AAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGTTTTTGAAGAAAAGTTGA
1 AAGTATCAATTTTTCTTAAAAATAAA-TTTCAAAAAAGATTTTTG-AGAAAAGTTGA
*
5926643 AAGTATCAATTTTTCTTAAAAATAAATTTCAAAAAAGGTTTTTGAGGAAAAGTTGA
1 AAGTATCAATTTTTCTTAAAAATAAATTTCAAAAAAGATTTTTGA-GAAAAGTTGA
* ** * * *
5926699 AAGTATCAATTTTTCTTAAAAATAATTTTTTTTTAAAAACAATTTTAAGGAAAAGTTGA
1 AAGTATCAATTTTTCTTAAAAATAA---ATTTCAAAAAAGATTTTTGA-GAAAAGTTGA
* * * * *
5926758 AAGTATCAATTTTTCTCAAAATTAAGGTTTCCAAAAAAATATTTTTTGAAAAAAGTTGA
1 AAGTATCAATTTTTCTTAAAAATAA-ATTT-C-AAAAAAGA-TTTTTGAGAAAAGTTGA
* ** * * * * *
5926817 AAGTATCAATTTTCCTCGAGATTAAAATTTTTAAAAAATATTTTGGAGAAAAGTTGA
1 AAGTATCAATTTTTCTTAAAAAT-AAA-TTTCAAAAAAGATTTTTGAGAAAAGTTGA
5926874 AAGTATCAATTTTT
1 AAGTATCAATTTTT
5926888 TCTGCATAAA
Statistics
Matches: 210, Mismatches: 26, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
55 1 0.00
56 53 0.25
57 56 0.27
58 8 0.04
59 82 0.39
60 10 0.05
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.38
Consensus pattern (55 bp):
AAGTATCAATTTTTCTTAAAAATAAATTTCAAAAAAGATTTTTGAGAAAAGTTGA
Found at i:5926734 original size:17 final size:17
Alignment explanation
Indices: 5926708--5926744 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
5926698 AAAGTATCAA
*
5926708 TTTTTCTTAAAAATAAT
1 TTTTTCTTAAAAACAAT
*
5926725 TTTTTTTTAAAAACAAT
1 TTTTTCTTAAAAACAAT
5926742 TTT
1 TTT
5926745 AAGGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTTCTTAAAAACAAT
Found at i:5928457 original size:23 final size:22
Alignment explanation
Indices: 5928431--5928477 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
5928421 ATAATAGGTG
5928431 GAGTAGATGATGGCTGTAGGGGT
1 GAGTAGATGA-GGCTGTAGGGGT
* *
5928454 GAGTAGGTTAGGCTGTAGGGGT
1 GAGTAGATGAGGCTGTAGGGGT
5928476 GA
1 GA
5928478 TTGTAAGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.26
Consensus pattern (22 bp):
GAGTAGATGAGGCTGTAGGGGT
Found at i:5928903 original size:16 final size:16
Alignment explanation
Indices: 5928882--5928915 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5928872 AGACATTAAG
*
5928882 TATTTATTATTATTAT
1 TATTTATTATTATAAT
5928898 TATTTATTATTATAAT
1 TATTTATTATTATAAT
5928914 TA
1 TA
5928916 ATTAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTATTATTATAAT
Found at i:5929242 original size:3 final size:3
Alignment explanation
Indices: 5929234--5929259 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
5929224 CTTGACCTTA
5929234 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
5929260 AGGGAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:5929522 original size:26 final size:26
Alignment explanation
Indices: 5929464--5929536 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
5929454 AGAAATATTT
* *
5929464 TTTTATTAATTAATTAATTATATATA
1 TTTTAATAATTAATTAATTATATAAA
* *
5929490 TTATAATAATATAATT-ATTATTTAAA
1 TTTTAATAAT-TAATTAATTATATAAA
*
5929516 TTTTAATTAATGATATTAATT
1 TTTTAA-TAATTA-ATTAATT
5929537 TAATAAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 22 0.59
27 12 0.32
28 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (26 bp):
TTTTAATAATTAATTAATTATATAAA
Found at i:5929549 original size:45 final size:42
Alignment explanation
Indices: 5929473--5929610 Score: 117
Period size: 45 Copynumber: 3.2 Consensus size: 42
5929463 TTTTTATTAA
*
5929473 TTAATTAATTATATATATTATAAT-AATATAATTATTATTTAAATT
1 TTAATTAA-TATATA-ATT-TAATAAAAATAA-TATTATTTAAATT
5929518 TTAATTAATGATATTAATTTAATAAAAATAATA-TATTT--A-T
1 TTAATTAAT-ATA-TAATTTAATAAAAATAATATTATTTAAATT
* *
5929558 ATAATTAATATATAATTTATATTAAAAATAATATT-TTATAAATA
1 TTAATTAATATATAATTTA-A-TAAAAATAATATTATT-TAAATT
5929602 TTATATTAA
1 TTA-ATTAA
5929611 ATTAAAATTG
Statistics
Matches: 78, Mismatches: 4, Indels: 22
0.75 0.04 0.21
Matches are distributed among these distances:
38 7 0.09
39 4 0.05
40 22 0.28
41 3 0.04
43 6 0.08
44 9 0.12
45 25 0.32
46 2 0.03
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (42 bp):
TTAATTAATATATAATTTAATAAAAATAATATTATTTAAATT
Found at i:5929584 original size:40 final size:39
Alignment explanation
Indices: 5929519--5929597 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 39
5929509 ATTTAAATTT
5929519 TAATTAATGATATTAATTTAATAAAAATAATATATTTATA
1 TAATTAATGATATTAATTTAATAAAAATAATAT-TTTATA
5929559 TAATTAAT-ATA-TAATTTATATTAAAAATAATATTTTATA
1 TAATTAATGATATTAATTTA-A-TAAAAATAATATTTTATA
5929598 AATATTATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
38 7 0.19
39 10 0.27
40 20 0.54
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (39 bp):
TAATTAATGATATTAATTTAATAAAAATAATATTTTATA
Found at i:5929960 original size:19 final size:18
Alignment explanation
Indices: 5929917--5929962 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
5929907 TTATTATTTT
5929917 AAAAAATTTTATATAAAA
1 AAAAAATTTTATATAAAA
*
5929935 AATAAATTTTAT-TAATAA
1 AAAAAATTTTATATAA-AA
5929953 AACAAAATTT
1 AA-AAAATTT
5929963 CAAGTTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 15 0.62
19 6 0.25
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAAAATTTTATATAAAA
Found at i:5934356 original size:27 final size:27
Alignment explanation
Indices: 5934328--5934396 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
5934318 AAACAACTCC
5934328 TTCAAATCCAGATTCCTAACCAAGCCCT
1 TTCAAATCCAGATTCCTAACC-AGCCCT
* *
5934356 TTAAAAT-CAGATTCTTAACCAGCCCT
1 TTCAAATCCAGATTCCTAACCAGCCCT
* *
5934382 TTCAAAACCATATTC
1 TTCAAATCCAGATTC
5934397 GAAAACTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 11 0.31
27 18 0.51
28 6 0.17
ACGTcount: A:0.35, C:0.30, G:0.06, T:0.29
Consensus pattern (27 bp):
TTCAAATCCAGATTCCTAACCAGCCCT
Found at i:5945478 original size:2 final size:2
Alignment explanation
Indices: 5945418--5945466 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
5945408 AAATCAAATC
* * *
5945418 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5945460 AT -T AT AT
1 AT AT AT AT
5945467 TACAAAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
AT
Found at i:5946695 original size:25 final size:26
Alignment explanation
Indices: 5946647--5946695 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
5946637 CAAGAAAGAT
* *
5946647 AATAATTTAATTTTAATTATTTATCA
1 AATAATTTAATTTCAATTAATTATCA
*
5946673 AATAATTTTA-TTCAATTAATTAT
1 AATAATTTAATTTCAATTAATTAT
5946696 TTAATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
AATAATTTAATTTCAATTAATTATCA
Found at i:5947561 original size:22 final size:22
Alignment explanation
Indices: 5947533--5947576 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
5947523 AACTTTTAAA
5947533 CAATTGAGAAGGTAACATAATT
1 CAATTGAGAAGGTAACATAATT
5947555 CAATTGAGAAGGTAACATAATT
1 CAATTGAGAAGGTAACATAATT
5947577 TGCAATGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (22 bp):
CAATTGAGAAGGTAACATAATT
Found at i:5947678 original size:15 final size:15
Alignment explanation
Indices: 5947657--5947692 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
5947647 AAATATAAAC
5947657 ATTTATATAA-ATTA
1 ATTTATATAATATTA
5947671 AGTTTATATAATATTA
1 A-TTTATATAATATTA
5947687 ATTTAT
1 ATTTAT
5947693 GAGTTTATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 14 0.70
16 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTATATAATATTA
Found at i:5949229 original size:47 final size:47
Alignment explanation
Indices: 5949136--5949229 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 47
5949126 TTATCTTATT
* **
5949136 ATCTTAATAGCTAAGGATTCAAACGATTAGGTAGTTTTTTTTACTTC
1 ATCTTAATAGCTAAAGATTCAAACGATTAGGTAGTTTTTTCAACTTC
* ** * *
5949183 ATCTTGATAGCTAAAGATTGGAATGATTTGGTAGTTTTTTCAACTTC
1 ATCTTAATAGCTAAAGATTCAAACGATTAGGTAGTTTTTTCAACTTC
5949230 TTAATCATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.43
Consensus pattern (47 bp):
ATCTTAATAGCTAAAGATTCAAACGATTAGGTAGTTTTTTCAACTTC
Found at i:5950410 original size:4 final size:4
Alignment explanation
Indices: 5950403--5950432 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
5950393 TAGCTTACTT
5950403 AATA AATA AATA AATA AATA AATA TAATA A
1 AATA AATA AATA AATA AATA AATA -AATA A
5950433 TTTAATTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:5955214 original size:17 final size:17
Alignment explanation
Indices: 5955165--5955218 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 17
5955155 ATGAAATGAT
* *
5955165 TTTTAAAATATAATAAAA
1 TTTT-AAATATATTTAAA
5955183 TATTTAATATAATATTTAAA
1 T-TTTAA-AT-ATATTTAAA
5955203 TTTTAAATATATTTAA
1 TTTTAAATATATTTAA
5955219 TGTAATGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 8 0.26
18 5 0.16
19 10 0.32
20 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAATATATTTAAA
Found at i:5956015 original size:30 final size:30
Alignment explanation
Indices: 5955981--5956096 Score: 105
Period size: 30 Copynumber: 3.8 Consensus size: 30
5955971 TATGTTTTTG
*
5955981 TTACATCTAAATAAATCTTTAATCTTTAAT
1 TTACATCTAAATAAATCTTTAATATTTAAT
*
5956011 TTACAT-TAAAATAAATTTTTAATATTTAAT
1 TTACATCT-AAATAAATCTTTAATATTTAAT
* * *
5956041 TTATATAC-AAATAAA-CTTTTAATTTTTGTAT
1 TTACAT-CTAAATAAATC-TTTAATATTT-AAT
*
5956072 TTACA-CTTAAATAAATTTTTAATAT
1 TTACATC-TAAATAAATCTTTAATAT
5956097 AAGCCAATCT
Statistics
Matches: 69, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
29 2 0.03
30 47 0.68
31 20 0.29
ACGTcount: A:0.42, C:0.08, G:0.01, T:0.49
Consensus pattern (30 bp):
TTACATCTAAATAAATCTTTAATATTTAAT
Found at i:5956165 original size:24 final size:25
Alignment explanation
Indices: 5956115--5956169 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
5956105 CTTTTATTTT
*
5956115 TAAAAAAAATTTATTTGAATACAAA
1 TAAAAAAAAATTATTTGAATACAAA
*
5956140 TAAAAAAAAATTATTTGAATA-TAA
1 TAAAAAAAAATTATTTGAATACAAA
5956164 TAAAAA
1 TAAAAA
5956170 TATAAAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (25 bp):
TAAAAAAAAATTATTTGAATACAAA
Found at i:5958157 original size:32 final size:32
Alignment explanation
Indices: 5958121--5958182 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
5958111 TTCTCAAAAT
*
5958121 AATATTAATGACATGATAAGGTTAAATCAAGA
1 AATATCAATGACATGATAAGGTTAAATCAAGA
* *
5958153 AATATCAGTGACATGATAAGGTTTAATCAA
1 AATATCAATGACATGATAAGGTTAAATCAA
5958183 CAATTATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (32 bp):
AATATCAATGACATGATAAGGTTAAATCAAGA
Found at i:5958925 original size:30 final size:30
Alignment explanation
Indices: 5958837--5958927 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
5958827 ATTTTTAATT
* *
5958837 TTTAATTTGTACTCAAGTAAGTTATTAATCA
1 TTTAATTTGTACTTAAATAAGTTATTAA-CA
* *
5958868 -TTAATTTGTATTTAAATAAGCTATTAACA
1 TTTAATTTGTACTTAAATAAGTTATTAACA
* * *
5958897 TTTAATCTGTACTTAAATAAATTCTTAACA
1 TTTAATTTGTACTTAAATAAGTTATTAACA
5958927 T
1 T
5958928 AAAATAATAT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
29 2 0.04
30 48 0.96
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (30 bp):
TTTAATTTGTACTTAAATAAGTTATTAACA
Found at i:5959004 original size:120 final size:120
Alignment explanation
Indices: 5958858--5959097 Score: 342
Period size: 120 Copynumber: 2.0 Consensus size: 120
5958848 CTCAAGTAAG
* * **
5958858 TTATTAATCATTAATTTGTATTTAAATAAG-CTATTAACATTTAATCTGTACTTAAATAAAT-TC
1 TTATTAATCATTAATTTGAATCTAAATAAGTC-ATTAACATTTAATCCATACTTAAATAAATCT-
5958921 TTAACATAAAATAATATTTTATTTGAAATAAGAGCTTATTTGAATACAAATTAAAAA
64 TTAACATAAAATAATATTTTATTTGAAATAAGAGCTTATTTGAATACAAATTAAAAA
* * *
5958978 TTATTAAT-ATTTAATTTGAATCTAAATAAGTCATTAATATTTAATCCATACTTATATTAATCTT
1 TTATTAATCA-TTAATTTGAATCTAAATAAGTCATTAACATTTAATCCATACTTAAATAAATCTT
* * *
5959042 TAATATAAAATAATATTTTATTTGAAATAAGAGTTTATTTGAATATAAATTAAAAA
65 TAACATAAAATAATATTTTATTTGAAATAAGAGCTTATTTGAATACAAATTAAAAA
5959098 AATTATCAAA
Statistics
Matches: 107, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
119 1 0.01
120 104 0.97
121 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.43
Consensus pattern (120 bp):
TTATTAATCATTAATTTGAATCTAAATAAGTCATTAACATTTAATCCATACTTAAATAAATCTTT
AACATAAAATAATATTTTATTTGAAATAAGAGCTTATTTGAATACAAATTAAAAA
Found at i:5959428 original size:13 final size:13
Alignment explanation
Indices: 5959398--5959429 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
5959388 ATACATCATG
5959398 AAAA-AAATCAAT
1 AAAACAAATCAAT
5959410 -AAACAAATCAAT
1 AAAACAAATCAAT
5959422 AAAACAAA
1 AAAACAAA
5959430 CAAATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 8 0.44
13 7 0.39
ACGTcount: A:0.75, C:0.12, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAACAAATCAAT
Found at i:5963883 original size:10 final size:10
Alignment explanation
Indices: 5963859--5963892 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
5963849 ATAAAAAAAT
5963859 TATTTTT-TA
1 TATTTTTATA
*
5963868 TTTTTTTATA
1 TATTTTTATA
5963878 TATTTTTATA
1 TATTTTTATA
5963888 TATTT
1 TATTT
5963893 AATTTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.27
10 16 0.73
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TATTTTTATA
Found at i:5963923 original size:19 final size:19
Alignment explanation
Indices: 5963899--5963950 Score: 79
Period size: 21 Copynumber: 2.7 Consensus size: 19
5963889 ATTTAATTTT
5963899 ATATTTATATTAAAAAATA
1 ATATTTATATTAAAAAATA
5963918 ATATTTTATATTTAAAAAATA
1 ATA-TTTATA-TTAAAAAATA
5963939 ATA-TTATATTAA
1 ATATTTATATTAA
5963951 TTTTAGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.13
19 8 0.26
20 6 0.19
21 13 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATTTATATTAAAAAATA
Found at i:5963955 original size:24 final size:23
Alignment explanation
Indices: 5963892--5963955 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 23
5963882 TTTATATATT
* *
5963892 TAATTTTATATTTATATTAAAAAA
1 TAATATTATA-TTATTTTAAAAAA
*
5963916 TAATATTTTA-TA-TTTAAAAAA
1 TAATATTATATTATTTTAAAAAA
5963937 TAATATTATATTAATTTTA
1 TAATATTATATT-ATTTTA
5963956 GGTCAAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 17 0.52
22 3 0.09
23 1 0.03
24 12 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TAATATTATATTATTTTAAAAAA
Found at i:5967006 original size:21 final size:21
Alignment explanation
Indices: 5966968--5967010 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
5966958 ATTATATTTT
5966968 CTTTCATAAAACTAAATTGTGA
1 CTTTCATAAAACTAAATT-TGA
5966990 CTTTC-TAAAA-TATAATTTGA
1 CTTTCATAAAACTA-AATTTGA
5967010 C
1 C
5967011 ATGCTTGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 6 0.30
21 9 0.45
22 5 0.25
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (21 bp):
CTTTCATAAAACTAAATTTGA
Found at i:5969496 original size:16 final size:16
Alignment explanation
Indices: 5969470--5969506 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
5969460 TGAAAGTTAA
*
5969470 AGAAGTAGAATGCATT
1 AGAATTAGAATGCATT
*
5969486 TGAATTAGAATGCATT
1 AGAATTAGAATGCATT
5969502 AGAAT
1 AGAAT
5969507 ATTGTTGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (16 bp):
AGAATTAGAATGCATT
Found at i:5974195 original size:17 final size:17
Alignment explanation
Indices: 5974173--5974207 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5974163 TTCATTTGCT
5974173 TTTATTT-TTTTCTTTTA
1 TTTATTTATTTT-TTTTA
5974190 TTTATTTATTTTTTTTA
1 TTTATTTATTTTTTTTA
5974207 T
1 T
5974208 AAAAACTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTATTTATTTTTTTTA
Found at i:5974728 original size:17 final size:18
Alignment explanation
Indices: 5974706--5974749 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
5974696 ACTTAATCAG
*
5974706 AATTTTAA-AAATAAATT
1 AATTTTAATAAATAAATA
*
5974723 AATTTTAATAATTAAATA
1 AATTTTAATAAATAAATA
5974741 AACTTTTAA
1 AA-TTTTAA
5974750 CTTTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 9 0.39
19 6 0.26
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTTTAATAAATAAATA
Found at i:5975545 original size:11 final size:11
Alignment explanation
Indices: 5975529--5975554 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
5975519 CTCATAAGAA
5975529 ATTTGTTTGAG
1 ATTTGTTTGAG
5975540 ATTTGTTTGAG
1 ATTTGTTTGAG
5975551 ATTT
1 ATTT
5975555 TTCAGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (11 bp):
ATTTGTTTGAG
Found at i:5975668 original size:52 final size:52
Alignment explanation
Indices: 5975582--5975736 Score: 206
Period size: 52 Copynumber: 3.0 Consensus size: 52
5975572 GGACAAGTAA
* *
5975582 ACTTGCAAAAGAAGAATTCTAAGA-GAAAGAGGATTCTTAATTGGTAAGTTTG
1 ACTTGCAAGAGAAGAATTCTAAGAGGAAAG-GGATTCTTAATAGGTAAGTTTG
*
5975634 ACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGTAAGTTTG
1 ACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTTG
* * * * * *
5975686 ACTTGCATGAGAAGAATTTTAAGAGGAGA-GGATTTTTAATGGGCAAGTTTG
1 ACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTTG
5975737 TATGGTTATA
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
51 19 0.21
52 68 0.74
53 5 0.05
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (52 bp):
ACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTTG
Found at i:5976257 original size:31 final size:31
Alignment explanation
Indices: 5976219--5976303 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
5976209 AGGCTTTTAG
*
5976219 CCCAACAAATGGTATCAGAGCTGTGGTATTC
1 CCCAACAAGTGGTATCAGAGCTGTGGTATTC
*
5976250 CCCAACAAGTGGTATCAGAGCTGTGGTGTTC
1 CCCAACAAGTGGTATCAGAGCTGTGGTATTC
* *
5976281 CTCAACAAGTGGTATCAAAGCTG
1 CCCAACAAGTGGTATCAGAGCTG
5976304 AAGGTTTGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (31 bp):
CCCAACAAGTGGTATCAGAGCTGTGGTATTC
Found at i:5976374 original size:25 final size:25
Alignment explanation
Indices: 5976346--5976422 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
5976336 AAGATGTAAA
*
5976346 AAGAGTTGATGGTTCAAGACATAGG
1 AAGAGTTGATGGTTCAAGACATGGG
** * *
5976371 AAGAGTTGACAGTTCGAGATATGGG
1 AAGAGTTGATGGTTCAAGACATGGG
* *
5976396 AAGAGCT--TGGTTTAAGACATGGG
1 AAGAGTTGATGGTTCAAGACATGGG
5976419 AAGA
1 AAGA
5976423 AATAAGCTTA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 15 0.37
25 26 0.63
ACGTcount: A:0.35, C:0.08, G:0.34, T:0.23
Consensus pattern (25 bp):
AAGAGTTGATGGTTCAAGACATGGG
Found at i:5976765 original size:52 final size:52
Alignment explanation
Indices: 5976679--5976835 Score: 199
Period size: 52 Copynumber: 3.0 Consensus size: 52
5976669 TGGACAAGAA
* * * *
5976679 GACTTGCAAAAGAAGAATTCTAAGA-GAAAGAAGATTCTTAATATGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAA-AAGATTCTTAATAAGCAAGTTT
*
5976731 GACTTACAAGAGAAGAATTCTAAAAGGAAAAAGATTCTTAATAAGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAAGCAAGTTT
* * ** **
5976783 GACTTACATGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAAGCAAGTTT
5976835 G
1 G
5976836 TATGATTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 88 0.96
53 4 0.04
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAAGCAAGTTT
Found at i:5977627 original size:30 final size:30
Alignment explanation
Indices: 5977593--5977700 Score: 121
Period size: 30 Copynumber: 3.6 Consensus size: 30
5977583 TGTTATATCT
*
5977593 AAATAAATTTTTAATCTTTAATTTACATTA
1 AAATAAATTTTTAATATTTAATTTACATTA
* *
5977623 AAATAAATTCTTAATATTTAATTTATA-TA
1 AAATAAATTTTTAATATTTAATTTACATTA
* * *
5977652 CAAATAAACTTTTAATTTTTTTATTTACACTT-
1 -AAATAAATTTTTAA-TATTTAATTTACA-TTA
5977684 AAATAAATTTTTAATAT
1 AAATAAATTTTTAATAT
5977701 AAGCCAATCT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
29 2 0.03
30 38 0.59
31 23 0.36
33 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (30 bp):
AAATAAATTTTTAATATTTAATTTACATTA
Found at i:5977640 original size:60 final size:61
Alignment explanation
Indices: 5977585--5977700 Score: 157
Period size: 61 Copynumber: 1.9 Consensus size: 61
5977575 TATATTTTTG
*
5977585 TTATAT-CTAAATAAATTTTTAA-TCTTTAATTTACA-TTAAAATAAATTCTTAATATTTAAT
1 TTATATAC-AAATAAACTTTTAATTCTTTAATTTACACTT-AAATAAATTCTTAATATTTAAT
* * *
5977645 TTATATACAAATAAACTTTTAATTTTTTTATTTACACTTAAATAAATTTTTAATAT
1 TTATATACAAATAAACTTTTAATTCTTTAATTTACACTTAAATAAATTCTTAATAT
5977701 AAGCCAATCT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
60 19 0.39
61 28 0.57
62 2 0.04
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (61 bp):
TTATATACAAATAAACTTTTAATTCTTTAATTTACACTTAAATAAATTCTTAATATTTAAT
Found at i:5977786 original size:29 final size:30
Alignment explanation
Indices: 5977718--5977786 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
5977708 TCTTTTATTT
*
5977718 AAAATAAAAGTTTATTTGAATACAAATTAA
1 AAAATAAAAATTTATTTGAATACAAATTAA
* *
5977748 AAAATAAAAATTTGTTTGAATA-TAA-TAA
1 AAAATAAAAATTTATTTGAATACAAATTAA
5977776 AAATATAAAAA
1 AAA-ATAAAAA
5977787 CTTCTTTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 6 0.17
29 9 0.26
30 20 0.57
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAATAAAAATTTATTTGAATACAAATTAA
Found at i:5977800 original size:28 final size:28
Alignment explanation
Indices: 5977745--5977800 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
5977735 GAATACAAAT
* * *
5977745 TAAAAAATAAAAATTTGTTTGAATATAA
1 TAAAAAATAAAAACTTCTTTGAAGATAA
5977773 TAAAAATATAAAAACTTCTTT-AAGATAA
1 TAAAAA-ATAAAAACTTCTTTGAAGATAA
5977801 ATAGAGTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (28 bp):
TAAAAAATAAAAACTTCTTTGAAGATAA
Found at i:5977803 original size:29 final size:28
Alignment explanation
Indices: 5977745--5977803 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
5977735 GAATACAAAT
* * *
5977745 TAAAAAATAAAAATTTGTTTGAATATAA
1 TAAAAAATAAAAACTTCTTTAAATATAA
5977773 TAAAAATATAAAAACTTCTTTAAGATA-AA
1 TAAAAA-ATAAAAACTTCTTTAA-ATATAA
5977802 TA
1 TA
5977804 GAGTAGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.23
29 17 0.65
30 3 0.12
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (28 bp):
TAAAAAATAAAAACTTCTTTAAATATAA
Found at i:5978145 original size:19 final size:19
Alignment explanation
Indices: 5978123--5978160 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
5978113 ATATATATGC
5978123 AAATAATATA-CTAATAAAA
1 AAATAATA-AGCTAATAAAA
5978142 AAATAATAAGCTAATAAAA
1 AAATAATAAGCTAATAAAA
5978161 TTATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (19 bp):
AAATAATAAGCTAATAAAA
Found at i:5980399 original size:30 final size:30
Alignment explanation
Indices: 5980365--5980455 Score: 87
Period size: 30 Copynumber: 3.0 Consensus size: 30
5980355 ATTTTTTATT
* *
5980365 TTTAATTGATATTCAAATAAATTATTAACC
1 TTTAATTTATATTCAAATAAATTATTAACA
** *
5980395 TTTAATTTATA-TCTAAATAAGCTATTAATA
1 TTTAATTTATATTC-AAATAAATTATTAACA
* *
5980425 TTTAATTTATACTT-AAATAAATCATTGACA
1 TTTAATTTATA-TTCAAATAAATTATTAACA
5980455 T
1 T
5980456 AAAATAATGT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
29 2 0.04
30 45 0.94
32 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (30 bp):
TTTAATTTATATTCAAATAAATTATTAACA
Found at i:5981881 original size:22 final size:23
Alignment explanation
Indices: 5981853--5981896 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
5981843 ACAATTAGAT
* *
5981853 ATTTATCCTA-ATAAATCTAAAC
1 ATTTATCATACATAAATATAAAC
5981875 ATTTATCATACATAAATATAAA
1 ATTTATCATACATAAATATAAA
5981897 AATAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (23 bp):
ATTTATCATACATAAATATAAAC
Found at i:5981916 original size:16 final size:16
Alignment explanation
Indices: 5981892--5981930 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
5981882 ATACATAAAT
5981892 ATAAAAATAAAAAAAA
1 ATAAAAATAAAAAAAA
* *
5981908 ATAATAATATAAAAAA
1 ATAAAAATAAAAAAAA
5981924 ATAAAAA
1 ATAAAAA
5981931 AAATTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
ATAAAAATAAAAAAAA
Found at i:5982916 original size:13 final size:12
Alignment explanation
Indices: 5982892--5982936 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
5982882 CTGATTTCTG
*
5982892 TCTTATTTTGTT
1 TCTTTTTTTGTT
5982904 TCTTTTGTTTGTTT
1 TCTTTT-TTTG-TT
5982918 TCTTTTTTTGTT
1 TCTTTTTTTGTT
5982930 T-TTTTTT
1 TCTTTTTT
5982937 ATTTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 6 0.20
12 8 0.27
13 8 0.27
14 8 0.27
ACGTcount: A:0.02, C:0.07, G:0.09, T:0.82
Consensus pattern (12 bp):
TCTTTTTTTGTT
Found at i:5982958 original size:15 final size:14
Alignment explanation
Indices: 5982940--5982979 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
5982930 TTTTTTTATT
5982940 TTTTTTATTAATAAA
1 TTTTTTATTAA-AAA
5982955 TTTTTTATTAAAAA
1 TTTTTTATTAAAAA
*
5982969 TATTATTATTA
1 T-TTTTTATTA
5982980 TTATTAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTTTATTAAAAA
Found at i:5985083 original size:30 final size:30
Alignment explanation
Indices: 5985049--5985114 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
5985039 ATTTTTAATT
*
5985049 TTTAATTGATATTCT-AATAAGTTATTAACA
1 TTTAATTGATA-TCTAAATAAGCTATTAACA
* *
5985079 TTTAATTTATATCTAAATAAGCTATTAATA
1 TTTAATTGATATCTAAATAAGCTATTAACA
5985109 TTTAAT
1 TTTAAT
5985115 CTGTACTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (30 bp):
TTTAATTGATATCTAAATAAGCTATTAACA
Found at i:5988591 original size:3 final size:3
Alignment explanation
Indices: 5988583--5988609 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
5988573 AGATTATTTG
5988583 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
5988610 AACTGAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:5989627 original size:14 final size:14
Alignment explanation
Indices: 5989598--5989657 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
5989588 AAAAAATTAA
*
5989598 TTATTTA-ATTTAT
1 TTATTTATATATAT
5989611 TTATTTATATATAT
1 TTATTTATATATAT
*
5989625 TTATATAATTATATAT
1 TTAT-TTA-TATATAT
** *
5989641 TTAAATATTTATAT
1 TTATTTATATATAT
5989655 TTA
1 TTA
5989658 AAAATAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 7 0.18
14 18 0.47
15 3 0.08
16 10 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTTATATATAT
Found at i:5989628 original size:18 final size:18
Alignment explanation
Indices: 5989595--5989640 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
5989585 TATAAAAAAT
* *
5989595 TAATTATTTA-ATTTATT
1 TAATTATATATATTTATA
*
5989612 TATTTATATATATTTATA
1 TAATTATATATATTTATA
5989630 TAATTATATAT
1 TAATTATATAT
5989641 TTAAATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTATATATATTTATA
Found at i:5989629 original size:8 final size:8
Alignment explanation
Indices: 5989618--5989654 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
5989608 TATTTATTTA
5989618 TATATATT
1 TATATATT
*
5989626 TATATAAT
1 TATATATT
5989634 TATATATT
1 TATATATT
*
5989642 TAAATATT
1 TATATATT
5989650 TATAT
1 TATAT
5989655 TTAAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TATATATT
Found at i:5989658 original size:14 final size:16
Alignment explanation
Indices: 5989618--5989671 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 16
5989608 TATTTATTTA
*
5989618 TATATATTTATATAAT
1 TATATATTTAAATAAT
5989634 TATATATTTAAAT-AT
1 TATATATTTAAATAAT
5989649 T-TATATTTAAA-AAT
1 TATATATTTAAATAAT
*
5989663 AATAT-TTTA
1 TATATATTTA
5989672 TATTTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 16 0.47
15 6 0.18
16 12 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:5989668 original size:19 final size:20
Alignment explanation
Indices: 5989644--5989694 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
5989634 TATATATTTA
5989644 AATATTTATATTT-AAAAAT
1 AATATTTATATTTAAAAAAT
5989663 AATATTTTATATTTAAAAAAT
1 AATA-TTTATATTTAAAAAAT
5989684 AATATTT-TATT
1 AATATTTATATT
5989695 AATTTTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.27
20 12 0.40
21 10 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATATTTATATTTAAAAAAT
Found at i:5989703 original size:24 final size:21
Alignment explanation
Indices: 5989644--5989693 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
5989634 TATATATTTA
5989644 AATA-TTTATATTT-AAAAAT
1 AATATTTTATATTTAAAAAAT
5989663 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
5989684 AATATTTTAT
1 AATATTTTAT
5989694 TAATTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.14
20 9 0.31
21 16 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:5990961 original size:33 final size:33
Alignment explanation
Indices: 5990924--5991036 Score: 109
Period size: 33 Copynumber: 3.4 Consensus size: 33
5990914 CAGTTGGTTT
* *
5990924 GAGCCAGATTAGTCGGCCCGATCCTAAACGGAC
1 GAGCCAGATTAATCGGCCCGAGCCTAAACGGAC
* * * *
5990957 GAGCCAGGTTAATCGTCCCGAGCCTACACGGAT
1 GAGCCAGATTAATCGGCCCGAGCCTAAACGGAC
* * * * **
5990990 GAACCACATTAATAGGCCCGAGCCCATTCGGAC
1 GAGCCAGATTAATCGGCCCGAGCCTAAACGGAC
*
5991023 GAGCCAGGTTAATC
1 GAGCCAGATTAATC
5991037 AGACAGGAAG
Statistics
Matches: 61, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (33 bp):
GAGCCAGATTAATCGGCCCGAGCCTAAACGGAC
Found at i:5994709 original size:112 final size:112
Alignment explanation
Indices: 5994466--5994718 Score: 267
Period size: 112 Copynumber: 2.3 Consensus size: 112
5994456 AATTTTTTTT
* ** * * *
5994466 AGATTATTTAAAATATTTTTTAATCGAAAATGCTTTAAATAATTCTGTTTAATTTTTTTTAGGGA
1 AGATTATTTAAAACATTTTTTAATAAAAAATACTTTAAATAAATCTGTTTAATTTTTTTTAGAGA
*
5994531 TTAATTGGCCAAAAATATCATAAATAATATCTATAAAAAATAAAATG
66 TTAATTGACCAAAAATATCATAAATAATATCTATAAAAAATAAAATG
** * *
5994578 AGATTATTTAAGGCGTTTTTTAGTAAAAAATACTTTAAATAAAAT-TGTTTAATTTTTTTT-GAG
1 AGATTATTTAAAACATTTTTTAATAAAAAATACTTTAAAT-AAATCTGTTTAATTTTTTTTAGAG
* ** * ** * * **
5994641 ATTATTTGATTAAAAATGTTTTAAATAATCATTTATAAAAACTTGAATG
65 ATTAATTGACCAAAAATATCATAAATAAT-ATCTATAAAAAATAAAATG
* *
5994690 AGTTTATTTAAAACATTTTTTAACAAAAA
1 AGATTATTTAAAACATTTTTTAATAAAAA
5994719 GTATCTTAAA
Statistics
Matches: 112, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
111 24 0.21
112 85 0.76
113 3 0.03
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (112 bp):
AGATTATTTAAAACATTTTTTAATAAAAAATACTTTAAATAAATCTGTTTAATTTTTTTTAGAGA
TTAATTGACCAAAAATATCATAAATAATATCTATAAAAAATAAAATG
Found at i:5996006 original size:63 final size:63
Alignment explanation
Indices: 5995794--5996029 Score: 196
Period size: 63 Copynumber: 3.8 Consensus size: 63
5995784 AAACAATTTT
* * * * ** *
5995794 AAGAGATTATTTAAGGTATTTTTTGGAT-AAAAAATGCTTTAAATAATCCTCTGGTACATTTTAA
1 AAGAGATTATTTAAGATA-TTTTTGGATAAAAAAATACCTTAAATAATCTTCTAATATA-TTTAA
* ** * * * *
5995858 AAGGGATTATTTAAGGCATTTGTGGATAAAAATCATA--TCAAATAATCATT-TAATATTTTTTA
1 AAGAGATTATTTAAGATATTTTTGGATAAAAA-AATACCTTAAATAATC-TTCTAATA-TATTTA
5995920 A
63 A
* ** *
5995921 AAGACATTATTTAAGAGGTTTTTAGATAAAAAAATACCTTAAATAATCTTCTAATATATTTAA
1 AAGAGATTATTTAAGATATTTTTGGATAAAAAAATACCTTAAATAATCTTCTAATATATTTAA
** *
5995984 AAGAGATTATTTAAGATATTTTT-GA-ACCAAAACACCTTAAATAATC
1 AAGAGATTATTTAAGATATTTTTGGATAAAAAAATACCTTAAATAATC
5996030 CTCAAAATGC
Statistics
Matches: 138, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
61 18 0.13
62 5 0.04
63 78 0.57
64 35 0.25
65 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.38
Consensus pattern (63 bp):
AAGAGATTATTTAAGATATTTTTGGATAAAAAAATACCTTAAATAATCTTCTAATATATTTAA
Found at i:5996121 original size:31 final size:33
Alignment explanation
Indices: 5996083--5996144 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
5996073 ATTTAAAGCA
5996083 TTTTT-AAAACAAAA-ATATCTTAAATAATTCT
1 TTTTTAAAAACAAAAGATATCTTAAATAATTCT
*
5996114 TTTTTAAAAAATAAAAGATATCTTAAATAAT
1 TTTTT-AAAAACAAAAGATATCTTAAATAAT
5996145 CCTTAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 5 0.19
33 8 0.30
34 14 0.52
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (33 bp):
TTTTTAAAAACAAAAGATATCTTAAATAATTCT
Found at i:5998213 original size:22 final size:22
Alignment explanation
Indices: 5998166--5998213 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
5998156 TTGTTACACC
**
5998166 AAATTATCAAAGATTAAATCTT
1 AAATTATCAAAGATTAAAAATT
*
5998188 AAATTATTAAA-ATTAAAAATT
1 AAATTATCAAAGATTAAAAATT
5998209 GAAAT
1 -AAAT
5998214 CTCTGTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
AAATTATCAAAGATTAAAAATT
Found at i:6007164 original size:24 final size:24
Alignment explanation
Indices: 6007137--6007182 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6007127 TGCCACCGTT
* *
6007137 GCCATCAATTCCAA-ATCTGCCACA
1 GCCAACAATACCAACAT-TGCCACA
6007161 GCCAACAATACCAACATTGCCA
1 GCCAACAATACCAACATTGCCA
6007183 ACTACTCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.37, C:0.37, G:0.09, T:0.17
Consensus pattern (24 bp):
GCCAACAATACCAACATTGCCACA
Found at i:6007247 original size:9 final size:9
Alignment explanation
Indices: 6007235--6007274 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
6007225 CTTCCTAGCA
6007235 TGCCTACTT
1 TGCCTACTT
*
6007244 TGCCTACCT
1 TGCCTACTT
*
6007253 TGCCTGCTT
1 TGCCTACTT
*
6007262 TGCCCACTT
1 TGCCTACTT
6007271 TGCC
1 TGCC
6007275 GACTGCACCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.07, C:0.40, G:0.15, T:0.38
Consensus pattern (9 bp):
TGCCTACTT
Found at i:6008862 original size:22 final size:22
Alignment explanation
Indices: 6008834--6008875 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
6008824 CAGTACTTAA
6008834 TATATAAACCCAACACCAGGGC
1 TATATAAACCCAACACCAGGGC
6008856 TATATAAACCCAACACCAGG
1 TATATAAACCCAACACCAGG
6008876 CCTTGTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.31, G:0.12, T:0.14
Consensus pattern (22 bp):
TATATAAACCCAACACCAGGGC
Found at i:6017074 original size:21 final size:23
Alignment explanation
Indices: 6017050--6017097 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
6017040 AAAATGTCTT
6017050 TTAAAAA-CAAAAAATA-TATAA
1 TTAAAAACCAAAAAATATTATAA
* *
6017071 TTAAAAACCTAAAAATATTATAT
1 TTAAAAACCAAAAAATATTATAA
6017094 TTAA
1 TTAA
6017098 GATTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 7 0.30
22 8 0.35
23 8 0.35
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (23 bp):
TTAAAAACCAAAAAATATTATAA
Found at i:6018522 original size:3 final size:3
Alignment explanation
Indices: 6018514--6018543 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
6018504 AATATCAGTC
6018514 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6018544 AAGATAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6023832 original size:30 final size:30
Alignment explanation
Indices: 6023797--6023930 Score: 205
Period size: 30 Copynumber: 4.5 Consensus size: 30
6023787 GAAGCAAACG
* *
6023797 TATATACATAGGTTCGAAAACAAATATAAA
1 TATATACATAGGTTCAAAAACAAACATAAA
6023827 TATATACATAGGTTCAAAAACAAACATAAA
1 TATATACATAGGTTCAAAAACAAACATAAA
*
6023857 TATATACATAGGTTAAAAAACAAACATAAA
1 TATATACATAGGTTCAAAAACAAACATAAA
* * * *
6023887 TATATGCATAGGTTCAAAAATAAGCATACA
1 TATATACATAGGTTCAAAAACAAACATAAA
6023917 TATATACATAGGTT
1 TATATACATAGGTT
6023931 TGAAAAAAAG
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 95 1.00
ACGTcount: A:0.52, C:0.11, G:0.10, T:0.27
Consensus pattern (30 bp):
TATATACATAGGTTCAAAAACAAACATAAA
Found at i:6024408 original size:21 final size:21
Alignment explanation
Indices: 6024382--6024423 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
6024372 GACTCACATA
*
6024382 TTTTTTCAACCATGTATAACC
1 TTTTTTCAACCATATATAACC
6024403 TTTTTTCAACCATATATAACC
1 TTTTTTCAACCATATATAACC
6024424 CAATTATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (21 bp):
TTTTTTCAACCATATATAACC
Found at i:6027375 original size:17 final size:17
Alignment explanation
Indices: 6027332--6027372 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
6027322 AAGAAAAAAA
6027332 TATTATTATAATAATTT
1 TATTATTATAATAATTT
*
6027349 TTTTAATTATAAT-ATTT
1 TATT-ATTATAATAATTT
6027366 TATTATT
1 TATTATT
6027373 TATGATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTATTATAATAATTT
Found at i:6031489 original size:20 final size:20
Alignment explanation
Indices: 6031466--6031507 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
6031456 CAATCACCTG
6031466 ATTAGATTGGTAATGAGTGA
1 ATTAGATTGGTAATGAGTGA
*
6031486 ATTAGATTGTTAATGAGTGA
1 ATTAGATTGGTAATGAGTGA
6031506 AT
1 AT
6031508 GGCACATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (20 bp):
ATTAGATTGGTAATGAGTGA
Found at i:6033531 original size:13 final size:13
Alignment explanation
Indices: 6033513--6033537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6033503 GGAAACAGCA
6033513 TGTCTTGGTTGAG
1 TGTCTTGGTTGAG
6033526 TGTCTTGGTTGA
1 TGTCTTGGTTGA
6033538 TGTATTCCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.36, T:0.48
Consensus pattern (13 bp):
TGTCTTGGTTGAG
Found at i:6041568 original size:17 final size:19
Alignment explanation
Indices: 6041541--6041581 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
6041531 GTAAAAAAAA
*
6041541 TTAATAATTTAAT-TTGTT
1 TTAATAATTTAATATTATT
6041559 TTAA-AATTTAATATTATT
1 TTAATAATTTAATATTATT
6041577 TTAAT
1 TTAAT
6041582 TAAAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTAATAATTTAATATTATT
Done.