Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 23 of 117
Found at i:6496819 original size:23 final size:22
Alignment explanation
Indices: 6496779--6496825 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
6496769 ATATCAAAAT
* * *
6496779 AAAAATAAATTATGTATTTTTA
1 AAAAATAAAATATATATTATTA
6496801 AAAAATAAAAATATATATTATTA
1 AAAAAT-AAAATATATATTATTA
6496824 AA
1 AA
6496826 TGATAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAAATAAAATATATATTATTA
Found at i:6497782 original size:8 final size:8
Alignment explanation
Indices: 6497763--6497795 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
6497753 ATATTAGATT
6497763 TTAAAAAA
1 TTAAAAAA
6497771 -TAAAAAA
1 TTAAAAAA
6497778 TTAAAAAAA
1 TT-AAAAAA
6497787 TTAAAAAA
1 TTAAAAAA
6497795 T
1 T
6497796 CAAATTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
TTAAAAAA
Found at i:6499536 original size:23 final size:23
Alignment explanation
Indices: 6499510--6499556 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
6499500 GATGTACGCC
6499510 TCGCTAAATTCTAATATTAATTG
1 TCGCTAAATTCTAATATTAATTG
6499533 TCGCTAAATTCTAATATTAATTG
1 TCGCTAAATTCTAATATTAATTG
6499556 T
1 T
6499557 TAAGTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TCGCTAAATTCTAATATTAATTG
Found at i:6513788 original size:6 final size:6
Alignment explanation
Indices: 6513777--6513806 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
6513767 ATTATTTATG
*
6513777 CTCGAA CTCGAA CTCGAA CTCGGA CTCGAA
1 CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA
6513807 ATATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.20, T:0.17
Consensus pattern (6 bp):
CTCGAA
Found at i:6516021 original size:2 final size:2
Alignment explanation
Indices: 6516014--6516043 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6516004 AAGCATATGC
6516014 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6516044 ACACAGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6517426 original size:4 final size:4
Alignment explanation
Indices: 6517417--6517446 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
6517407 GATGCCTGTC
6517417 TCTT TCTT TCTT TCTT TCTT TCTTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TC-TT TCTT T
6517447 TCTATTTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TCTT
Found at i:6523891 original size:14 final size:14
Alignment explanation
Indices: 6523873--6523906 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6523863 CTATTAATTT
*
6523873 AAATTTTTATTTAA
1 AAATTTTTAATTAA
*
6523887 TAATTTTTAATTAA
1 AAATTTTTAATTAA
6523901 AAATTT
1 AAATTT
6523907 CATAAATTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AAATTTTTAATTAA
Found at i:6527220 original size:13 final size:13
Alignment explanation
Indices: 6527202--6527228 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6527192 ATATTGACTG
6527202 TAAAATAAAATTA
1 TAAAATAAAATTA
6527215 TAAAATAAAATTA
1 TAAAATAAAATTA
6527228 T
1 T
6527229 TCTGACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAAATAAAATTA
Found at i:6532652 original size:3 final size:3
Alignment explanation
Indices: 6532644--6532679 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
6532634 AAAAGAATGA
6532644 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6532680 TTAAACATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6533752 original size:16 final size:16
Alignment explanation
Indices: 6533722--6533784 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 16
6533712 TCTATGAATG
6533722 TATACATAC--ATATA
1 TATACATACATATATA
*
6533736 TATACATAGATATATA
1 TATACATACATATATA
* *
6533752 TGTACATACATATTTA
1 TATACATACATATATA
* *
6533768 TATATATACAAATATA
1 TATACATACATATATA
6533784 T
1 T
6533785 GTATATATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
14 8 0.21
16 31 0.79
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.40
Consensus pattern (16 bp):
TATACATACATATATA
Found at i:6533762 original size:20 final size:20
Alignment explanation
Indices: 6533737--6533814 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
6533727 ATACATATAT
6533737 ATACATAGATATATATGTAC
1 ATACATAGATATATATGTAC
** *
6533757 ATACATATTTATATATATAC
1 ATACATAGATATATATGTAC
* * *
6533777 AAATATATGTATATATATGTAA
1 ATACATA-G-ATATATATGTAC
*
6533799 ATATAT-G-TATATATGT
1 ATACATAGATATATATGT
6533815 GTATGCACCT
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
18 9 0.20
20 23 0.50
22 14 0.30
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (20 bp):
ATACATAGATATATATGTAC
Found at i:6533789 original size:16 final size:16
Alignment explanation
Indices: 6533747--6533791 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
6533737 ATACATAGAT
* *
6533747 ATATATGTACATACAT
1 ATATATGTATATACAA
* *
6533763 ATTTATATATATACAA
1 ATATATGTATATACAA
6533779 ATATATGTATATA
1 ATATATGTATATA
6533792 TATGTAAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (16 bp):
ATATATGTATATACAA
Found at i:6533817 original size:20 final size:20
Alignment explanation
Indices: 6533745--6533817 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
6533735 ATATACATAG
* *
6533745 ATATATATGTACATACATATTT
1 ATATATATGTA-A-ATATATGT
**
6533767 ATATATATACAAATATATGT
1 ATATATATGTAAATATATGT
6533787 ATATATATGTAAATATATGT
1 ATATATATGTAAATATATGT
*
6533807 ATATATGTGTA
1 ATATATATGTA
6533818 TGCACCTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 34 0.77
21 1 0.02
22 9 0.20
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (20 bp):
ATATATATGTAAATATATGT
Found at i:6533827 original size:18 final size:18
Alignment explanation
Indices: 6533806--6533855 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
6533796 TAAATATATG
*
6533806 TATATATGTGTATGCACC
1 TATATATGTGTATGCACA
* *
6533824 TATATATATGTATGCATA
1 TATATATGTGTATGCACA
*
6533842 TATATATGTATATG
1 TATATATGTGTATG
6533856 TATGTCGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (18 bp):
TATATATGTGTATGCACA
Found at i:6533923 original size:12 final size:12
Alignment explanation
Indices: 6533899--6534234 Score: 85
Period size: 12 Copynumber: 28.0 Consensus size: 12
6533889 GTATACATCC
*
6533899 ATACATATACAT
1 ATACATATATAT
* **
6533911 ATATATATGCAT
1 ATACATATATAT
* *
6533923 ACACATATATAG
1 ATACATATATAT
*
6533935 GTACATACATATAT
1 ATACAT--ATATAT
*
6533949 ATACATTTATAT
1 ATACATATATAT
*
6533961 ATACATATATGTAA
1 ATACATATA--TAT
6533975 ATACATATATAT
1 ATACATATATAT
*
6533987 ATACATATATGTT
1 ATACATATAT-AT
* *
6534000 CGTACATACATAT
1 -ATACATATATAT
* *
6534013 ATATATACATAT
1 ATACATATATAT
** *
6534025 ATATGTATGTAT
1 ATACATATATAT
* * *
6534037 ATATATATGTTT
1 ATACATATATAT
** *
6534049 ATATGTATATGT
1 ATACATATATAT
*
6534061 TTACATATATATGT
1 ATACATATATA--T
** *
6534075 ATATGTATGTAT
1 ATACATATATAT
* *
6534087 GTACATATATGT
1 ATACATATATAT
*
6534099 AT--ATATATGT
1 ATACATATATAT
* * *
6534109 ATATATTTGTAT
1 ATACATATATAT
*
6534121 TTAC-T-TATAT
1 ATACATATATAT
*
6534131 AT--ATATATGT
1 ATACATATATAT
*
6534141 ATATATATATAT
1 ATACATATATAT
* * *
6534153 GTACACATATGT
1 ATACATATATAT
*
6534165 AT--ATGTATAT
1 ATACATATATAT
* *
6534175 ATACATATGTGT
1 ATACATATATAT
* * *
6534187 TTATATGTATAT
1 ATACATATATAT
* *
6534199 GTATATATATAT
1 ATACATATATAT
* *
6534211 ATATATGTATAT
1 ATACATATATAT
**
6534223 ATGTATATATAT
1 ATACATATATAT
6534235 GTATTATATA
Statistics
Matches: 234, Mismatches: 74, Indels: 32
0.69 0.22 0.09
Matches are distributed among these distances:
9 1 0.00
10 28 0.12
11 1 0.00
12 165 0.71
13 2 0.01
14 37 0.16
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (12 bp):
ATACATATATAT
Found at i:6533923 original size:18 final size:18
Alignment explanation
Indices: 6533902--6533995 Score: 61
Period size: 18 Copynumber: 5.3 Consensus size: 18
6533892 TACATCCATA
6533902 CATATACATATATATATG
1 CATATACATATATATATG
* *
6533920 C--ATACACATATATAGG
1 CATATACATATATATATG
* *
6533936 TACATACATATATATA--
1 CATATACATATATATATG
* *
6533952 CATTTATATATACATATATG
1 CA--TATACATATATATATG
* * *
6533972 TAAATACATATATATATA
1 CATATACATATATATATG
6533990 CATATA
1 CATATA
6533996 TGTTCGTACA
Statistics
Matches: 55, Mismatches: 15, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
16 14 0.25
18 40 0.73
20 1 0.02
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.37
Consensus pattern (18 bp):
CATATACATATATATATG
Found at i:6533928 original size:44 final size:44
Alignment explanation
Indices: 6533875--6533967 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
6533865 ATATATGCAA
* *
6533875 ACATGCACATATAT-GTATACATCCATACATATACATATATATAT
1 ACATACACATATATAG-ATACATACATACATATACATATATATAT
* * * *
6533919 GCATACACATATATAGGTACATACATATATATACATTTATATAT
1 ACATACACATATATAGATACATACATACATATACATATATATAT
6533963 ACATA
1 ACATA
6533968 TATGTAAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.34
Consensus pattern (44 bp):
ACATACACATATATAGATACATACATACATATACATATATATAT
Found at i:6533986 original size:26 final size:26
Alignment explanation
Indices: 6533899--6534113 Score: 132
Period size: 26 Copynumber: 8.1 Consensus size: 26
6533889 GTATACATCC
* *
6533899 ATACATATACATAT--ATATATGCAT
1 ATACATATATATATACATATATGTAT
* ** * *
6533923 ACACATATATAGGTACATACATATAT
1 ATACATATATATATACATATATGTAT
* *
6533949 ATACATTTATATATACATATATGTAA
1 ATACATATATATATACATATATGTAT
*
6533975 ATACATATATATATACATATATGTTCGTAC
1 ATACATATATATATACATATA---T-GTAT
* *
6534005 ATACATATATATATACATATATATGT
1 ATACATATATATATACATATATGTAT
** ***
6534031 ATGTATATATATATGTTTATATGTAT
1 ATACATATATATATACATATATGTAT
* * *
6534057 ATGTTTACATATATATGTATATGTATGTAT
1 A----TACATATATATATACATATATGTAT
* *
6534087 GTACATATATGTAT--ATATATGTAT
1 ATACATATATATATACATATATGTAT
6534111 ATA
1 ATA
6534114 TTTGTATTTA
Statistics
Matches: 144, Mismatches: 37, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
24 21 0.15
26 78 0.54
27 1 0.01
29 1 0.01
30 43 0.30
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (26 bp):
ATACATATATATATACATATATGTAT
Found at i:6534038 original size:14 final size:14
Alignment explanation
Indices: 6533943--6534244 Score: 188
Period size: 14 Copynumber: 21.4 Consensus size: 14
6533933 AGGTACATAC
* *
6533943 ATATATATACATTT
1 ATATATATATATGT
6533957 ATATATACATATATGT
1 ATATAT--ATATATGT
* * *
6533973 AAATACATATATAT
1 ATATATATATATGT
* *
6533987 ATACATATATGTTCGT
1 ATATATATAT-AT-GT
* * *
6534003 ACATACATATATAT
1 ATATATATATATGT
*
6534017 ATACATATATATGT
1 ATATATATATATGT
6534031 ATGTATATATATATGT
1 A--TATATATATATGT
* *
6534047 TTATATGTATATGT
1 ATATATATATATGT
* *
6534061 TTACATATATATGT
1 ATATATATATATGT
* *
6534075 ATATGTATGTATGT
1 ATATATATATATGT
* * *
6534089 ACATATATGTATAT
1 ATATATATATATGT
*
6534103 ATATGTATATAT-T
1 ATATATATATATGT
*
6534116 -TGTAT-T-TACT-T
1 ATATATATATA-TGT
6534127 ATATATATATATGT
1 ATATATATATATGT
6534141 ATATATATATATGT
1 ATATATATATATGT
* *
6534155 ACACATATGTATATGT
1 --ATATATATATATGT
*
6534171 ATATATACATATGTGT
1 ATATAT--ATATATGT
* *
6534187 TTATATGTATATGT
1 ATATATATATATGT
6534201 ATATATATATA--T
1 ATATATATATATGT
*
6534213 ATATGTATATATGT
1 ATATATATATATGT
*
6534227 ATATATATGTAT-T
1 ATATATATATATGT
6534240 ATATA
1 ATATA
6534245 AATGAAAGCT
Statistics
Matches: 221, Mismatches: 50, Indels: 35
0.72 0.16 0.11
Matches are distributed among these distances:
10 2 0.01
11 3 0.01
12 18 0.08
13 9 0.04
14 134 0.61
15 2 0.01
16 53 0.24
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (14 bp):
ATATATATATATGT
Found at i:6534043 original size:30 final size:30
Alignment explanation
Indices: 6533943--6534243 Score: 185
Period size: 30 Copynumber: 9.8 Consensus size: 30
6533933 AGGTACATAC
* * * *
6533943 ATATATATACATTTATATATACATATATGT
1 ATATATATATATATATATATATATGTATGT
* * *
6533973 AAATACATATATATATACATATATGT-TCGT
1 ATATATATATATATATATATATATGTAT-GT
* *
6534003 ACATACATATATATATACATATATATGTATGT
1 --ATATATATATATATATATATATATGTATGT
* * *
6534035 ATATATATATGTTTATATGTATATGT-T-T
1 ATATATATATATATATATATATATGTATGT
* * * * **
6534063 ACATATATATGTATATGTATGTATGTACAT
1 ATATATATATATATATATATATATGTATGT
* * * *
6534093 ATATGTATATATATGTATATATTTGTATTT
1 ATATATATATATATATATATATATGTATGT
* *
6534123 ACTTATATATATATATGTATATATATATATGT
1 A--TATATATATATATATATATATATGTATGT
* * * * *
6534155 ACACATATGTATATGTATATATACATATGTGTTT
1 ----ATATATATATATATATATATATATGTATGT
* * *
6534189 ATATGTATATGTATATATATATATATATGT
1 ATATATATATATATATATATATATGTATGT
* *
6534219 ATATATGTATATATATGTATTATAT
1 ATATATATATATATATATA-TATAT
6534244 AAATGAAAGC
Statistics
Matches: 207, Mismatches: 51, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
28 22 0.11
29 2 0.01
30 106 0.51
31 5 0.02
32 48 0.23
33 1 0.00
34 22 0.11
36 1 0.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (30 bp):
ATATATATATATATATATATATATGTATGT
Found at i:6547068 original size:13 final size:13
Alignment explanation
Indices: 6547050--6547086 Score: 58
Period size: 12 Copynumber: 2.8 Consensus size: 13
6547040 TCACATTAAT
6547050 AATAATAAAATTA
1 AATAATAAAATTA
6547063 AATAAT-AAATTA
1 AATAATAAAATTA
6547075 AATATATAAAAT
1 AATA-ATAAAAT
6547087 ATAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.45
13 8 0.36
14 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAAAATTA
Found at i:6550020 original size:216 final size:216
Alignment explanation
Indices: 6549639--6550030 Score: 547
Period size: 216 Copynumber: 1.8 Consensus size: 216
6549629 TACTACTAAT
* * **
6549639 TTGAATATGGTGTTAAAAGAGGATATAGTTCCTGATTTAAAAAGGGTTTCTCCTCCATTGGCAGC
1 TTGAATATGGTGTTAAAAGAGAATATAGCTCCTGAAATAAAAAGGGTTTCTCCTCCATTGGCAGC
* *
6549704 TTCTGCTGTTGAAAGTGAAATTCTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAATTGAAG
66 TTCTGCTGTTGAAAGTGAAATACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGTGAAG
* ** *
6549769 TGCCCCACGGTGTTAAGTTGCAGGAAGAAAATAGTGATTCTTCTGAGGGACATTGTGAGAATTTT
131 TGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGAGGGACATTGTGAGAATTTT
6549834 GGTAAAATTCAAGGTAATGCA
196 GGTAAAATTCAAGGTAATGCA
* *
6549855 TTGAATATGGTGTT-AAAGATGAATTTAGCTCCTGAAATAGAGAA-GGTTTCTCCTCCATTGGCA
1 TTGAATATGGTGTTAAAAGA-GAATATAGCTCCTGAAATA-AAAAGGGTTTCTCCTCCATTGGCA
* * * ***
6549918 GCTTCTGCTGTTGAAAGTGAAACTAC-TACTGAATTAGCTTCTTTAGAGTCTGGTTTTGAAAGTG
64 GCTTCTGCTGTTGAAAGTGAAA-TACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGTG
* * *
6549982 ACGTGCCCCACGGTGTTAAATCCCAGGAAGACAATAGTGGTGCTTCTGA
128 AAGTGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGA
6550031 TGGAAATGGT
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
215 5 0.03
216 142 0.93
217 5 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (216 bp):
TTGAATATGGTGTTAAAAGAGAATATAGCTCCTGAAATAAAAAGGGTTTCTCCTCCATTGGCAGC
TTCTGCTGTTGAAAGTGAAATACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGTGAAG
TGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGAGGGACATTGTGAGAATTTT
GGTAAAATTCAAGGTAATGCA
Found at i:6550077 original size:216 final size:216
Alignment explanation
Indices: 6549637--6550099 Score: 544
Period size: 216 Copynumber: 2.1 Consensus size: 216
6549627 GGTACTACTA
* * **
6549637 ATTTGAATATGGTGTTAAAAGA-GGATATAGTTCCTGATTTAAAAAGGGTTTCTCCTCCATTGGC
1 ATTTGAATATGGTGTT-AAAGATGGATTTAGCTCCTGAAATAAAAAGGGTTTCTCCTCCATTGGC
* *
6549701 AGCTTCTGCTGTTGAAAGTGAAATTCTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAATTG
65 AGCTTCTGCTGTTGAAAGTGAAATACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGTG
* ** * * * *
6549766 AAGTGCCCCACGGTGTTAAGTTGCAGGAAGAAAATAGTGATTCTTCTGAGGGACATTGTGAGAAT
130 AAGTGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGAGGGAAATGGTAAGAAT
* *
6549831 TTTGGTAAAATTCAAGGTAATGC
195 GTTGATAAAATTCAAGG-AATGC
* *
6549854 A-TTGAATATGGTGTTAAAGATGAATTTAGCTCCTGAAATAGAGAA-GGTTTCTCCTCCATTGGC
1 ATTTGAATATGGTGTTAAAGATGGATTTAGCTCCTGAAATA-AAAAGGGTTTCTCCTCCATTGGC
* * * ***
6549917 AGCTTCTGCTGTTGAAAGTGAAACTAC-TACTGAATTAGCTTCTTTAGAGTCTGGTTTTGAAAGT
65 AGCTTCTGCTGTTGAAAGTGAAA-TACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGT
* * * * *
6549981 GACGTGCCCCACGGTGTTAAATCCCAGGAAGACAATAGTGGTGCTTCTGATGGAAATGGTAAGAG
129 GAAGTGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGAGGGAAATGGTAAGAA
*
6550046 TGTTGATAAAATT-GAGG-ATGC
194 TGTTGATAAAATTCAAGGAATGC
*
6550067 TACTTTGAATATGGAGTCT-AAGATGGATTTAGC
1 -A-TTTGAATATGGTGT-TAAAGATGGATTTAGC
6550100 AGTAGAAGAG
Statistics
Matches: 208, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
213 4 0.02
214 1 0.00
215 8 0.04
216 188 0.90
217 7 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (216 bp):
ATTTGAATATGGTGTTAAAGATGGATTTAGCTCCTGAAATAAAAAGGGTTTCTCCTCCATTGGCA
GCTTCTGCTGTTGAAAGTGAAATACTTACTCAATTAGCTTCTTCAGAGTCAGGTTCCAAAAGTGA
AGTGCCCCACGGTGTTAAATCCCAGGAAGAAAATAGTGATGCTTCTGAGGGAAATGGTAAGAATG
TTGATAAAATTCAAGGAATGC
Found at i:6556181 original size:2 final size:2
Alignment explanation
Indices: 6556174--6556221 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
6556164 TGATTTTAGG
6556174 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6556216 TA TA TA
1 TA TA TA
6556222 ATCGGGAATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6561241 original size:21 final size:21
Alignment explanation
Indices: 6561198--6561241 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6561188 TTATTTTTAA
*
6561198 AATTATCAAAAATTAAATTTT
1 AATTATCAAAAATTAAATATT
6561219 AATTA-CAAAAATTACAATATT
1 AATTATCAAAAATTA-AATATT
6561240 AA
1 AA
6561242 ATTTTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
AATTATCAAAAATTAAATATT
Found at i:6561255 original size:14 final size:14
Alignment explanation
Indices: 6561209--6561268 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
6561199 ATTATCAAAA
*
6561209 ATTAAATTTTAATT
1 ATTAAAATTTAATT
* * *
6561223 A-CAAAAATTACAAT
1 ATTAAAATTTA-ATT
*
6561237 ATTAAATTTTAATT
1 ATTAAAATTTAATT
6561251 ATTAAAATTTAATT
1 ATTAAAATTTAATT
6561265 -TTAA
1 ATTAA
6561269 TTAACAAATC
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
13 10 0.29
14 19 0.54
15 6 0.17
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTAAAATTTAATT
Found at i:6561257 original size:28 final size:30
Alignment explanation
Indices: 6561184--6561259 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 30
6561174 AACTATTCAT
* *
6561184 ATTTTTATTTTTAAAATTATCAAAAATTAA
1 ATTTTAATTATTAAAATTATCAAAAATTAA
** *
6561214 ATTTTAATTACAAAAATTA-C-AATATTAA
1 ATTTTAATTATTAAAATTATCAAAAATTAA
6561242 ATTTTAATTATTAAAATT
1 ATTTTAATTATTAAAATT
6561260 TAATTTTAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 23 0.59
29 1 0.03
30 15 0.38
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (30 bp):
ATTTTAATTATTAAAATTATCAAAAATTAA
Found at i:6561469 original size:23 final size:22
Alignment explanation
Indices: 6561442--6561508 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
6561432 AGAATGCTTC
6561442 AAAATTATACCTTTTTTATA-TTT
1 AAAATTATA--TTTTTTATATTTT
*
6561465 AAAATTCTTATTTTTTATATTTT
1 AAAATT-ATATTTTTTATATTTT
6561488 AAAA-T-TATTTTTTATGATTTT
1 AAAATTATATTTTTTAT-ATTTT
6561509 TTATTTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
20 10 0.25
21 5 0.12
22 10 0.25
23 13 0.32
24 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (22 bp):
AAAATTATATTTTTTATATTTT
Found at i:6561495 original size:20 final size:21
Alignment explanation
Indices: 6561453--6561508 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 21
6561443 AAATTATACC
6561453 TTTTTTATA-TTTAAAATTCTTA
1 TTTTTTATATTTTAAAA-T-TTA
6561475 TTTTTTATATTTTAAAA-TTA
1 TTTTTTATATTTTAAAATTTA
6561495 TTTTTTATGATTTT
1 TTTTTTAT-ATTTT
6561509 TTATTTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.34
21 5 0.16
22 9 0.28
23 7 0.22
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (21 bp):
TTTTTTATATTTTAAAATTTA
Found at i:6561500 original size:22 final size:22
Alignment explanation
Indices: 6561453--6561500 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
6561443 AAATTATACC
*
6561453 TTTTTTATATTTAAAATTCTTA
1 TTTTTTATATTTAAAATTATTA
6561475 TTTTTTATATTTTAAAATTATT-
1 TTTTTTATA-TTTAAAATTATTA
6561497 TTTT
1 TTTT
6561501 ATGATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTTTATATTTAAAATTATTA
Found at i:6561550 original size:16 final size:17
Alignment explanation
Indices: 6561529--6561564 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6561519 ACATTAAAAA
*
6561529 TTAT-AAAATTTTAATT
1 TTATAAAAATTTAAATT
6561545 TTATAAAAATTTAAATT
1 TTATAAAAATTTAAATT
6561562 TTA
1 TTA
6561565 ATATTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAAAAATTTAAATT
Found at i:6561583 original size:23 final size:22
Alignment explanation
Indices: 6561514--6561584 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 22
6561504 ATTTTTTATT
*
6561514 TTTTAACATTAAAA-ATTATAAAA
1 TTTTAATATTAAAATA-T-TAAAA
* * *
6561537 TTTTAATTTTATAAAAATTTAAA
1 TTTTAATATTA-AAATATTAAAA
6561560 TTTTAATATTAAATATATTAAAA
1 TTTTAATATTAAA-ATATTAAAA
6561583 TT
1 TT
6561585 AAAAATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.05
23 32 0.82
24 4 0.10
25 1 0.03
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTAATATTAAAATATTAAAA
Found at i:6568062 original size:2 final size:2
Alignment explanation
Indices: 6568057--6568082 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6568047 CCATAAACTA
6568057 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6568083 GAATAGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6572362 original size:18 final size:19
Alignment explanation
Indices: 6572327--6572363 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
6572317 GATATAAACG
6572327 AATAAACATGATAAACACA
1 AATAAACATGATAAACACA
*
6572346 AATATACATGA-AAACACA
1 AATAAACATGATAAACACA
6572364 TCTAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.62, C:0.16, G:0.05, T:0.16
Consensus pattern (19 bp):
AATAAACATGATAAACACA
Found at i:6574118 original size:14 final size:14
Alignment explanation
Indices: 6574101--6574150 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
6574091 TTAATATAGA
6574101 AATTATTTTATAAT
1 AATTATTTTATAAT
* *
6574115 AATTATTAATATAAA
1 AATTATT-TTATAAT
* *
6574130 AATAATTTTATAGT
1 AATTATTTTATAAT
6574144 AATTATT
1 AATTATT
6574151 AAATGAGTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
AATTATTTTATAAT
Found at i:6574121 original size:29 final size:29
Alignment explanation
Indices: 6574087--6574152 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
6574077 ATTGTATTAT
* *
6574087 ATTATTAATATAGAAATTATTTTATAATA
1 ATTATTAATATAAAAATAATTTTATAATA
*
6574116 ATTATTAATATAAAAATAATTTTATAGTA
1 ATTATTAATATAAAAATAATTTTATAATA
6574145 ATTATTAA
1 ATTATTAA
6574153 ATGAGTATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
ATTATTAATATAAAAATAATTTTATAATA
Found at i:6578966 original size:22 final size:20
Alignment explanation
Indices: 6578941--6578988 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
6578931 TGAGATCATC
*
6578941 ATATAGTTTCTTATCATTATAA
1 ATATA-TTTATTATCATTAT-A
6578963 ATATTATTTATTATCATTATA
1 ATA-TATTTATTATCATTATA
6578984 ATATA
1 ATATA
6578989 CTATTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 2 0.08
21 4 0.17
22 16 0.67
23 2 0.08
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (20 bp):
ATATATTTATTATCATTATA
Found at i:6580943 original size:15 final size:16
Alignment explanation
Indices: 6580907--6580944 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6580897 TATAAACACC
6580907 TTAAAATAAAAGGCAA
1 TTAAAATAAAAGGCAA
* *
6580923 TAAAAATAAAATG-AA
1 TTAAAATAAAAGGCAA
6580938 TTAAAAT
1 TTAAAAT
6580945 TTTAATTAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (16 bp):
TTAAAATAAAAGGCAA
Found at i:6581310 original size:24 final size:21
Alignment explanation
Indices: 6581258--6581302 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
6581248 TAATTTTATA
6581258 TTTATA-TTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
6581278 TTTATATTTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
6581299 TTTA
1 TTTA
6581303 AAATATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:6581836 original size:20 final size:20
Alignment explanation
Indices: 6581799--6581838 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6581789 TCATAATGAC
*
6581799 AAAAAAAAAATCATATCAAT
1 AAAAAAAAAATCAAATCAAT
6581819 AAAAAAAGAAAT-AAATCAAT
1 AAAAAAA-AAATCAAATCAAT
6581839 TCATTTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (20 bp):
AAAAAAAAAATCAAATCAAT
Found at i:6584203 original size:15 final size:16
Alignment explanation
Indices: 6584183--6584219 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
6584173 TTATGAGAAG
*
6584183 AAAAAAGA-AAAAATC
1 AAAAAAGATAAAAATA
6584198 AAAAAA-ATAAAAATA
1 AAAAAAGATAAAAATA
6584213 AAAAAAG
1 AAAAAAG
6584220 CCCATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 1 0.05
15 18 0.95
ACGTcount: A:0.84, C:0.03, G:0.05, T:0.08
Consensus pattern (16 bp):
AAAAAAGATAAAAATA
Found at i:6584234 original size:26 final size:26
Alignment explanation
Indices: 6584199--6584265 Score: 125
Period size: 26 Copynumber: 2.5 Consensus size: 26
6584189 GAAAAAATCA
6584199 AAAAAATAAAAATAAAAAAAGCCCAT
1 AAAAAATAAAAATAAAAAAAGCCCAT
6584225 AAAAAATAAAAATAAAAAAAGCCCAT
1 AAAAAATAAAAATAAAAAAAGCCCAT
6584251 AAAAAATAATAAATA
1 AAAAAATAA-AAATA
6584266 GTTGGGCCTG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 35 0.88
27 5 0.12
ACGTcount: A:0.75, C:0.09, G:0.03, T:0.13
Consensus pattern (26 bp):
AAAAAATAAAAATAAAAAAAGCCCAT
Found at i:6584252 original size:13 final size:13
Alignment explanation
Indices: 6584210--6584256 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
6584200 AAAAATAAAA
6584210 ATAAAAAAAGCCC
1 ATAAAAAAAGCCC
***
6584223 ATAAAAAATA-AAA
1 ATAAAAAA-AGCCC
6584236 ATAAAAAAAGCCC
1 ATAAAAAAAGCCC
6584249 ATAAAAAA
1 ATAAAAAA
6584257 TAATAAATAG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
12 1 0.04
13 24 0.92
14 1 0.04
ACGTcount: A:0.72, C:0.13, G:0.04, T:0.11
Consensus pattern (13 bp):
ATAAAAAAAGCCC
Found at i:6584539 original size:42 final size:42
Alignment explanation
Indices: 6584486--6584736 Score: 220
Period size: 42 Copynumber: 6.0 Consensus size: 42
6584476 AGTAAATGAA
* * * * *
6584486 GCTCTTCTAAACAGAGGCTCAACGATTTTAAGAAAAATAAA-T
1 GCTCCTCTAAACAGAGGCACAACAACTTTGA-AAAAATAAATT
* * * *
6584528 GCTCCTCTAAACAAAGGCACCATAACTTTGAAAAAATAAAAT
1 GCTCCTCTAAACAGAGGCACAACAACTTTGAAAAAATAAATT
* * *
6584570 GCTCCTCTAAATAGAGGCACCACAACTATGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACAACAACTTTGAAAAAATAAATT
* * * *
6584612 ACTCCTCTAAATAGAGGTA-ACACAACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACA-ACAACTTTGAAAAAATAAATT
* *
6584654 GCTCCTCTAAACAAAGGCACCACAACTTTTG-AAAAATAAATT
1 GCTCCTCTAAACAGAGGCACAACAAC-TTTGAAAAAATAAATT
** * * * * *
6584696 ATTTCTTTAAACAGAGTCAACCACAATTTTGAAAAAATAAA
1 GCTCCTCTAAACAGAGGC-ACAACAACTTTGAAAAAATAAA
6584737 AGACTCATTG
Statistics
Matches: 173, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
41 9 0.05
42 144 0.83
43 20 0.12
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACAACAACTTTGAAAAAATAAATT
Found at i:6584639 original size:84 final size:84
Alignment explanation
Indices: 6584517--6584737 Score: 259
Period size: 84 Copynumber: 2.6 Consensus size: 84
6584507 ACGATTTTAA
* * * * *
6584517 GAAAAATAAA-TGCTCCTCTAAACAAAGGCACCATAACTTTGAAAAAATAAAATGCTCCTCTAAA
1 GAAAAATAAATTACTCCTCTAAACAGAGGTAACACAACTTTGAAAAAATAAAATGCTCCTCTAAA
* *
6584581 TAGAGGCACCACAAC-TAT
66 CAAAGGCACCACAACTTAT
* * *
6584599 GAAAAAATAAATTACTCCTCTAAATAGAGGTAACACAACTTTGGAAAAATAAATTGCTCCTCTAA
1 G-AAAAATAAATTACTCCTCTAAACAGAGGTAACACAACTTTGAAAAAATAAAATGCTCCTCTAA
*
6584664 ACAAAGGCACCACAACTTTT
65 ACAAAGGCACCACAACTTAT
* * * *
6584684 GAAAAATAAATTATTTCTTTAAACAGA-GTCAACCACAATTTTGAAAAAATAAAA
1 GAAAAATAAATTACTCCTCTAAACAGAGGT-AA-CACAACTTTGAAAAAATAAAA
6584738 GACTCATTGA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
82 1 0.01
83 11 0.09
84 83 0.72
85 21 0.18
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.24
Consensus pattern (84 bp):
GAAAAATAAATTACTCCTCTAAACAGAGGTAACACAACTTTGAAAAAATAAAATGCTCCTCTAAA
CAAAGGCACCACAACTTAT
Found at i:6585136 original size:79 final size:80
Alignment explanation
Indices: 6585023--6585169 Score: 242
Period size: 79 Copynumber: 1.9 Consensus size: 80
6585013 CCAAAGGCTT
* *
6585023 ACATTTGACAAATTTTAGGGTTTCACACCTCAAAGATTCTCATTTGAAATTAAAAAATTTTCATT
1 ACATTCGACAAATTTTAGGGTTTCACACCTCAAAGATTCTCATTTGAAATTAAAAAATTCTCATT
6585088 TGAGTTTGAAGATTC
66 TGAGTTTGAAGATTC
* * *
6585103 ACATTCGACAAATTTT-GGGTTTCACACCTCAAAGATTTTCATTTGAAATTCAAAGATTCTCATT
1 ACATTCGACAAATTTTAGGGTTTCACACCTCAAAGATTCTCATTTGAAATTAAAAAATTCTCATT
6585167 TGA
66 TGA
6585170 CAAATTTTGG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
79 47 0.76
80 15 0.24
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (80 bp):
ACATTCGACAAATTTTAGGGTTTCACACCTCAAAGATTCTCATTTGAAATTAAAAAATTCTCATT
TGAGTTTGAAGATTC
Found at i:6585143 original size:58 final size:58
Alignment explanation
Indices: 6585079--6585263 Score: 266
Period size: 59 Copynumber: 3.2 Consensus size: 58
6585069 AAATTAAAAA
*
6585079 ATTTTCATTTGAGTTTGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAG
1 ATTTTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAG
* * * * *
6585137 ATTTTCATTTGAAATTCAAAGATTCTCATTTGACAAATTTTGGGTTTCACACCTCAAAA
1 ATTTTCATTTG-AGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAG
* *
6585196 ATTTTCATTTGAGTTCGAAGATTCACATTCAACAAA-TTT-GGTTTCACATCTCAAAG
1 ATTTTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAG
*
6585252 ATTCTCATTTGA
1 ATTTTCATTTGA
6585264 AATTCAAATA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
56 26 0.23
57 3 0.03
58 31 0.28
59 52 0.46
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (58 bp):
ATTTTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAG
Found at i:6585279 original size:115 final size:117
Alignment explanation
Indices: 6585075--6585284 Score: 361
Period size: 115 Copynumber: 1.8 Consensus size: 117
6585065 TTTGAAATTA
* *
6585075 AAAAATTTTCATTTGAGTTTGAAGATTCACATTCGACAAATTTTGGGTTTCACACCTCAAAGATT
1 AAAAATTTTCATTTGAGTTCGAAGATTCACATTCAACAAATTTTGGGTTTCACACCTCAAAGATT
*
6585140 TTCATTTGAAATTCAAAGATTCTCATTTGACAAATTTTGGGTTTCACACCTC
66 CTCATTTGAAATTCAAAGATTCTCATTTGACAAATTTTGGGTTTCACACCTC
*
6585192 AAAAATTTTCATTTGAGTTCGAAGATTCACATTCAACAAA-TTT-GGTTTCACATCTCAAAGATT
1 AAAAATTTTCATTTGAGTTCGAAGATTCACATTCAACAAATTTTGGGTTTCACACCTCAAAGATT
*
6585255 CTCATTTGAAATTCAAATATTCTCATTTGA
66 CTCATTTGAAATTCAAAGATTCTCATTTGA
6585285 GTTCGAAGAT
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
115 47 0.53
116 3 0.03
117 38 0.43
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (117 bp):
AAAAATTTTCATTTGAGTTCGAAGATTCACATTCAACAAATTTTGGGTTTCACACCTCAAAGATT
CTCATTTGAAATTCAAAGATTCTCATTTGACAAATTTTGGGTTTCACACCTC
Found at i:6585348 original size:79 final size:79
Alignment explanation
Indices: 6585190--6585443 Score: 361
Period size: 79 Copynumber: 3.2 Consensus size: 79
6585180 GTTTCACACC
* * *
6585190 TCAAAAATTTTCATTTGAGTTCGAAGATTCACATTCAACAAA-TTT-GGTTTCACA-TCTCAAAG
1 TCAAAGATTCTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACT-TCAAAG
6585252 ATTCTCATTTGAAAT
65 ATTCTCATTTGAAAT
* * * *
6585267 TCAAATATTCTCATTTGAGTTCGAAGATTGACATTTGATAAATTTTGGGTTTCACACTTCAAAGA
1 TCAAAGATTCTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACTTCAAAGA
*
6585332 TTCTCATTTGGAAT
66 TTCTCATTTGAAAT
* * * *
6585346 TCAAAGATTCTCATTTGAGTTCGAAGAGTCATATTCGACAAATTTTGGGTTTTACACCTCAAAGA
1 TCAAAGATTCTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACTTCAAAGA
*
6585411 TTCTAATTTGAAAT
66 TTCTCATTTGAAAT
6585425 TCAAAGATTCTCATTTGAG
1 TCAAAGATTCTCATTTGAG
6585444 AACTCAAAAA
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 36 0.23
78 3 0.02
79 117 0.75
80 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (79 bp):
TCAAAGATTCTCATTTGAGTTCGAAGATTCACATTCGACAAATTTTGGGTTTCACACTTCAAAGA
TTCTCATTTGAAAT
Found at i:6585456 original size:22 final size:21
Alignment explanation
Indices: 6585403--6585458 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
6585393 GGTTTTACAC
*
6585403 CTCAAAGATTCTAATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
*
6585424 TTCAAAGATTCTCATTTGAGAA
1 CTCAAAGATTCTCATTTGA-AA
*
6585446 CTCAAAAATTCTC
1 CTCAAAGATTCTC
6585459 GCCAAAAGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:6586731 original size:9 final size:9
Alignment explanation
Indices: 6586714--6586792 Score: 63
Period size: 9 Copynumber: 8.6 Consensus size: 9
6586704 TGAGTCTTCC
6586714 TTTTC-TTT
1 TTTTCTTTT
*
6586722 TCTT-TTTT
1 TTTTCTTTT
*
6586730 TTTTCATTT
1 TTTTCTTTT
6586739 TTTTCTATTT
1 TTTTCT-TTT
*
6586749 CTTTCTTTT
1 TTTTCTTTT
6586758 TTTTCTCTTAT
1 TTTTCT-TT-T
*
6586769 TTTTCTTCT
1 TTTTCTTTT
*
6586778 TTTTCATCTT
1 TTTTC-TTTT
6586788 TTTTC
1 TTTTC
6586793 ATCCATTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
8 9 0.16
9 22 0.39
10 18 0.32
11 7 0.12
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:6586732 original size:10 final size:10
Alignment explanation
Indices: 6586713--6586781 Score: 59
Period size: 10 Copynumber: 6.6 Consensus size: 10
6586703 TTGAGTCTTC
*
6586713 CTTTTCTTTT
1 CTTTTTTTTT
6586723 CTTTTTTTTT
1 CTTTTTTTTT
*
6586733 -TCATTTTTTT
1 CT-TTTTTTTT
* *
6586743 CTATTTCTTT
1 CTTTTTTTTT
6586753 CTTTTTTTTCT
1 CTTTTTTTT-T
6586764 CTTATTTTTCTT
1 CTT-TTTTT-TT
6586776 CTTTTT
1 CTTTTT
6586782 CATCTTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 1 0.02
10 30 0.61
11 8 0.16
12 9 0.18
13 1 0.02
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:6586733 original size:11 final size:11
Alignment explanation
Indices: 6586714--6586781 Score: 52
Period size: 11 Copynumber: 6.4 Consensus size: 11
6586704 TGAGTCTTCC
*
6586714 TTTTCTTTTCT
1 TTTTTTTTTCT
6586725 TTTTTTTTTC-
1 TTTTTTTTTCT
*
6586735 -ATTTTTTTC-
1 TTTTTTTTTCT
* *
6586744 TATTTCTTTCT
1 TTTTTTTTTCT
*
6586755 TTTTTTTCTCT
1 TTTTTTTTTCT
*
6586766 TATTTTTCTTCT
1 T-TTTTTTTTCT
6586778 TTTT
1 TTTT
6586782 CATCTTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
9 8 0.17
10 8 0.17
11 21 0.46
12 9 0.20
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:6586744 original size:20 final size:19
Alignment explanation
Indices: 6586714--6586791 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 19
6586704 TGAGTCTTCC
*
6586714 TTTTCTTTTCTTTTTTT-T
1 TTTTTTTTTCTTTTTTTCT
6586732 TTCATTTTTTTCTATTTCTTTCT
1 TT--TTTTTTTCT-TTT-TTTCT
*
6586755 TTTTTTTCTCTTATTTTTCT
1 TTTTTTTTTCTT-TTTTTCT
**
6586775 TCTTTTTCATCTTTTTT
1 T-TTTTTTTTCTTTTTT
6586792 CATCCATTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
18 2 0.04
20 19 0.39
21 22 0.45
22 3 0.06
23 3 0.06
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTCTTTTTTTCT
Found at i:6586756 original size:30 final size:31
Alignment explanation
Indices: 6586715--6586774 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
6586705 GAGTCTTCCT
*
6586715 TTTCTTTTCTTTTTTTTTTCATT-TTTTTCTA
1 TTTCTTTTCTTTTTTTTCTC-TTATTTTTCTA
6586746 TTTC-TTTCTTTTTTTTCTCTTATTTTTCT
1 TTTCTTTTCTTTTTTTTCTCTTATTTTTCT
6586775 TCTTTTTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 2 0.07
30 21 0.78
31 4 0.15
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (31 bp):
TTTCTTTTCTTTTTTTTCTCTTATTTTTCTA
Found at i:6586790 original size:19 final size:18
Alignment explanation
Indices: 6586728--6586792 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 18
6586718 CTTTTCTTTT
6586728 TTTTTTCATTTTTTTCTAT-
1 TTTTTTC-TTTTTTTC-ATC
*
6586747 TTCTTTCTTTTTTTTC-TC
1 TTTTTTC-TTTTTTTCATC
6586765 TTATTTTTCTTCTTTTTCATC
1 -T-TTTTTCTT-TTTTTCATC
6586786 TTTTTTC
1 TTTTTTC
6586793 ATCCATTAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
17 1 0.03
19 23 0.61
20 12 0.32
21 2 0.05
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCTTTTTTTCATC
Found at i:6587175 original size:24 final size:23
Alignment explanation
Indices: 6587148--6587194 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
6587138 TGTTTGTGAC
*
6587148 ATTTTTCTTTTCTTTCTTTCTTTT
1 ATTTTGCTTTTCTTTCTTT-TTTT
*
6587172 ATTTTGCTTTTTTTTCTTTTTTT
1 ATTTTGCTTTTCTTTCTTTTTTT
6587195 GAGACCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (23 bp):
ATTTTGCTTTTCTTTCTTTTTTT
Found at i:6591450 original size:54 final size:53
Alignment explanation
Indices: 6591392--6591509 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 53
6591382 CCACCATTAG
*
6591392 AAATATTCTCTCTTTTTT-AATTTTTAAATTTTTCA-CAATTTGGGTCAATTTAAA
1 AAATATT-T-TCTTTTTTAAATTTTTAAATTTTTCACCAA-TTGGGCCAATTTAAA
*
6591446 AAATATTTTCTTTTTTCAAAATTTTTAAATTTTTCACCAATTGGGCCTATTTAAA
1 AAATATTTTCTTTTTT--AAATTTTTAAATTTTTCACCAATTGGGCCAATTTAAA
*
6591501 AAATTTTTT
1 AAATATTTT
6591510 TATTTCCTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
52 8 0.14
53 1 0.02
54 7 0.12
55 38 0.67
56 3 0.05
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (53 bp):
AAATATTTTCTTTTTTAAATTTTTAAATTTTTCACCAATTGGGCCAATTTAAA
Found at i:6592552 original size:109 final size:109
Alignment explanation
Indices: 6592439--6592642 Score: 290
Period size: 109 Copynumber: 1.9 Consensus size: 109
6592429 AGACACTATA
* * *
6592439 TCTAATTATTTT-ACCATTTATGTCAAATTT-AAAATATTTTCTCTTTTT-GAA-TTTCTAAATT
1 TCTAATT-TTTTCACCATTTAGGTC-AATTTAAAAATATTTTCT-TTTTTCAAATTTTCTAAAAT
*
6592500 TTTCATAATTTGGGCCTATTTAGAAATTCTTTTTTTTATTCTTTTATC
63 TTTCA-AATTTAGGCCTATTTAGAAATTCTTTTTTTTATTCTTTTATC
*
6592548 TCTAATTTTTTCACCATTTAGGTCAATTTAAAAATATTTTCTTTTTTCAAATTTTTTAAAATTTT
1 TCTAATTTTTTCACCATTTAGGTCAATTTAAAAATATTTTCTTTTTTCAAATTTTCTAAAATTTT
*
6592613 CACATTTAGGCCTATTTAGAAATTCTTTTT
66 CAAATTTAGGCCTATTTAGAAATTCTTTTT
6592643 ATTTCTCTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
108 14 0.16
109 58 0.68
110 13 0.15
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.54
Consensus pattern (109 bp):
TCTAATTTTTTCACCATTTAGGTCAATTTAAAAATATTTTCTTTTTTCAAATTTTCTAAAATTTT
CAAATTTAGGCCTATTTAGAAATTCTTTTTTTTATTCTTTTATC
Found at i:6592656 original size:53 final size:52
Alignment explanation
Indices: 6592507--6592661 Score: 134
Period size: 53 Copynumber: 2.8 Consensus size: 52
6592497 ATTTTTCATA
* * **
6592507 ATTTGGGCCTATTTAGAAATTCTTTTTTTTATTCTTTTATCTCTAATTTTTTCACC
1 ATTTAGGCCTATTTAGAAATTC-TTTTTTT-TTCTTTT-T-TTTAAAATTTTCACC
* * * **
6592563 ATTTAGGTCAATTTAAAAATAT-TTTCTTTTTTCAAATTTTTTAAAATTTTCA-C
1 ATTTAGGCCTATTTAGAAAT-TCTTT-TTTTTTC-TTTTTTTTAAAATTTTCACC
6592616 ATTTAGGCCTATTTAGAAATTCTTTTTATTTCTCTTTTTTTTAAAA
1 ATTTAGGCCTATTTAGAAATTCTTTTT-TTT-TCTTTTTTTTAAAA
6592662 AAAATAATAT
Statistics
Matches: 79, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
52 3 0.04
53 34 0.43
54 12 0.15
55 7 0.09
56 22 0.28
57 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.55
Consensus pattern (52 bp):
ATTTAGGCCTATTTAGAAATTCTTTTTTTTTCTTTTTTTTAAAATTTTCACC
Found at i:6593927 original size:5 final size:5
Alignment explanation
Indices: 6593898--6593956 Score: 68
Period size: 5 Copynumber: 11.8 Consensus size: 5
6593888 AAAAAAGAAG
* *
6593898 AAAAT TAAA- AAAAT CAAAAT AAAAAT AAAA- ATAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
6593948 AAAAT AAAA
1 AAAAT AAAA
6593957 AACAAAGCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
4 6 0.13
5 30 0.65
6 10 0.22
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:6593937 original size:35 final size:35
Alignment explanation
Indices: 6593889--6593957 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
6593879 AGAAAAAAGA
*
6593889 AAAAAGAAGAAAATTAAA-AAAATCAAAATAAAAAT
1 AAAAAGAAGAAAATAAAATAAAAT-AAAATAAAAAT
* *
6593924 AAAAATAATAAAATAAAATAAAATAAAATAAAAA
1 AAAAAGAAGAAAATAAAATAAAATAAAATAAAAA
6593958 ACAAAGCCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 25 0.83
36 5 0.17
ACGTcount: A:0.80, C:0.01, G:0.03, T:0.16
Consensus pattern (35 bp):
AAAAAGAAGAAAATAAAATAAAATAAAATAAAAAT
Found at i:6595066 original size:15 final size:15
Alignment explanation
Indices: 6595048--6595077 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6595038 TAAATTATTA
6595048 AATTCATTTCAAATT
1 AATTCATTTCAAATT
6595063 AATTCATTTCAAATT
1 AATTCATTTCAAATT
6595078 CCAATTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTCATTTCAAATT
Found at i:6608751 original size:10 final size:11
Alignment explanation
Indices: 6608729--6608757 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
6608719 TTTGATGTGA
6608729 TTAAAAATGTT
1 TTAAAAATGTT
6608740 TTAAAAAT-TT
1 TTAAAAATGTT
6608750 TTAAAAAT
1 TTAAAAAT
6608758 AAATCTCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (11 bp):
TTAAAAATGTT
Found at i:6609076 original size:6 final size:6
Alignment explanation
Indices: 6609065--6609089 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6609055 ACTAATTATA
6609065 TAAATT TAAATT TAAATT TAAATT T
1 TAAATT TAAATT TAAATT TAAATT T
6609090 CATATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:6610754 original size:2 final size:2
Alignment explanation
Indices: 6610747--6610785 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
6610737 TAAAATTAAA
*
6610747 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6610786 CACACAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6618857 original size:22 final size:20
Alignment explanation
Indices: 6618820--6618863 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
6618810 AAAATCATTT
* *
6618820 TATATTTAATTTTATTTAAA
1 TATATTTAATTATATTAAAA
6618840 TATACTTTAAATTATATTAAAA
1 TATA-TTT-AATTATATTAAAA
6618862 TA
1 TA
6618864 ATATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 13 0.65
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TATATTTAATTATATTAAAA
Found at i:6621619 original size:21 final size:21
Alignment explanation
Indices: 6621595--6621634 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6621585 TATCATTTAT
6621595 TTATAATTAACTTATTAGTAA
1 TTATAATTAACTTATTAGTAA
* **
6621616 TTATTATTATGTTATTAGT
1 TTATAATTAACTTATTAGT
6621635 GAGTTACTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (21 bp):
TTATAATTAACTTATTAGTAA
Found at i:6621682 original size:22 final size:22
Alignment explanation
Indices: 6621563--6621928 Score: 70
Period size: 22 Copynumber: 16.8 Consensus size: 22
6621553 ATTATCAATA
* *
6621563 ATTAACTAATTCATTACTAAATT
1 ATTAA-TAATTTATTATTAAATT
* * * * *
6621586 ATCATTTATTTATAATTAACTT
1 ATTAATAATTTATTATTAAATT
* **
6621608 ATTAGTAA-TTATTATTATGTT
1 ATTAATAATTTATTATTAAATT
* * * * *
6621629 ATTAGTGAGTTACTATTAAGTT
1 ATTAATAATTTATTATTAAATT
*
6621651 A-T--CAATTTATTATTAAATT
1 ATTAATAATTTATTATTAAATT
* *
6621670 ATTAATAATTTATTACTATATT
1 ATTAATAATTTATTATTAAATT
* * * *
6621692 ATCATTGATTTACTACTT-AATT
1 ATTAATAATTTATTA-TTAAATT
* * * **
6621714 TTTTATTATTTATTACAAAATT
1 ATTAATAATTTATTATTAAATT
*
6621736 ATT-ATAAATTTTATTATTAAATC
1 ATTAAT-AA-TTTATTATTAAATT
** * *** * *
6621759 ATCCATGAGCCACTATTAAGTT
1 ATTAATAATTTATTATTAAATT
* * *
6621781 ATCATTGATTTA-TATTAAATT
1 ATTAATAATTTATTATTAAATT
* *
6621802 A-TACATAATTTACTATTAAGTT
1 ATTA-ATAATTTATTATTAAATT
* * * * * *
6621824 ATCACTTATTAAGTATTAAGTT
1 ATTAATAATTTATTATTAAATT
** *
6621846 ATCGATAATTTACTATTAAATT
1 ATTAATAATTTATTATTAAATT
* **
6621868 A-TACTAATTTACTT-TTATGTT
1 ATTAATAATTTA-TTATTAAATT
* *
6621889 -TCTAATAATTAACTATTAAATT
1 AT-TAATAATTTATTATTAAATT
* * *
6621911 ATCAATTACTTATTATTA
1 ATTAATAATTTATTATTA
6621929 TGTTATGATT
Statistics
Matches: 238, Mismatches: 88, Indels: 35
0.66 0.24 0.10
Matches are distributed among these distances:
19 13 0.05
20 2 0.01
21 48 0.20
22 153 0.64
23 20 0.08
24 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTAATAATTTATTATTAAATT
Found at i:6621703 original size:44 final size:44
Alignment explanation
Indices: 6621654--6621757 Score: 102
Period size: 44 Copynumber: 2.3 Consensus size: 44
6621644 TTAAGTTATC
* * *
6621654 AATTTATTATTAAATTATTAATAATTTATTACTATATTATCATT
1 AATTTATTATTAAATTATTAATAATTTATTACAAAATTATCATA
* * * * * *
6621698 GATTTACTACTT-AATTTTTTATTATTTATTACAAAATTATTATA
1 AATTTATTA-TTAAATTATTAATAATTTATTACAAAATTATCATA
6621742 AATTTTATTATTAAAT
1 AA-TTTATTATTAAAT
6621758 CATCCATGAG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
44 35 0.76
45 11 0.24
ACGTcount: A:0.39, C:0.05, G:0.01, T:0.55
Consensus pattern (44 bp):
AATTTATTATTAAATTATTAATAATTTATTACAAAATTATCATA
Found at i:6621856 original size:44 final size:43
Alignment explanation
Indices: 6621770--6621869 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 43
6621760 TCCATGAGCC
*
6621770 ACTATTAAGTTATCATTGATTTATATTAAATTATACATAATTT
1 ACTATTAAGTTATCATTGATTAATATTAAATTATACATAATTT
*
6621813 ACTATTAAGTTATCACTT-ATTAAGTATTAAGTTAT-CGATAATTT
1 ACTATTAAGTTATCA-TTGATTAA-TATTAAATTATAC-ATAATTT
*
6621857 ACTATTAAATTAT
1 ACTATTAAGTTAT
6621870 ACTAATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
43 20 0.39
44 31 0.61
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (43 bp):
ACTATTAAGTTATCATTGATTAATATTAAATTATACATAATTT
Found at i:6621900 original size:65 final size:65
Alignment explanation
Indices: 6621770--6621914 Score: 179
Period size: 65 Copynumber: 2.2 Consensus size: 65
6621760 TCCATGAGCC
* * *
6621770 ACTATTAAGTTATCATTGATTTATATTAAATTATACATAATTTACTATTAAGTTATCACTTATTA
1 ACTATTAAGTTATCATTAATTTATATTAAATTATACATAATTTACTATTAAGTTATCAATAATTA
* * *
6621835 AGTATTAAGTTATCGA-TAATTTACTATTAAATTATAC-TAATTTACTTTTATGTT-TCTAATAA
1 ACTATTAAGTTATC-ATTAATTTA-TATTAAATTATACATAATTTACTATTAAGTTATC-AATAA
6621897 TTA
63 TTA
*
6621900 ACTATTAAATTATCA
1 ACTATTAAGTTATCA
6621915 ATTACTTATT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 3 0.04
65 52 0.75
66 14 0.20
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.48
Consensus pattern (65 bp):
ACTATTAAGTTATCATTAATTTATATTAAATTATACATAATTTACTATTAAGTTATCAATAATTA
Found at i:6622027 original size:22 final size:22
Alignment explanation
Indices: 6622002--6622097 Score: 86
Period size: 22 Copynumber: 4.4 Consensus size: 22
6621992 TTTATTGTTT
*
6622002 AATTATCAATAATTTACTATTA
1 AATTATCAATAATTTACTACTA
* *
6622024 AATTATCATTAATTTATTACTA
1 AATTATCAATAATTTACTACTA
* * * *
6622046 AGTTATTAATGATTAACTACTA
1 AATTATCAATAATTTACTACTA
* * *
6622068 AGTTATCACATATTTTA-TAATA
1 AATTATCA-ATAATTTACTACTA
6622090 AATTATCA
1 AATTATCA
6622098 TTGATTTATT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 53 0.91
23 5 0.09
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (22 bp):
AATTATCAATAATTTACTACTA
Found at i:6622214 original size:22 final size:22
Alignment explanation
Indices: 6622179--6622221 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6622169 TAATATTGCG
*
6622179 TTATTTACTACTAAATTATCAA
1 TTATTAACTACTAAATTATCAA
*
6622201 TTATTAACTTCTAAATTATCA
1 TTATTAACTACTAAATTATCA
6622222 TTCATTCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.47
Consensus pattern (22 bp):
TTATTAACTACTAAATTATCAA
Found at i:6622355 original size:21 final size:20
Alignment explanation
Indices: 6622274--6622355 Score: 58
Period size: 21 Copynumber: 4.0 Consensus size: 20
6622264 TATTATTTAG
**
6622274 TATTAAGTTATCACCGATTAAC
1 TATTAAGTTAT-AATGATT-AC
* *
6622296 -ATTAAGTTATCGATAATTAC
1 TATTAAGTTAT-AATGATTAC
*
6622316 TATTAAGTTATACTGATTAC
1 TATTAAGTTATAATGATTAC
* *
6622336 TTTTAAGTTTTTAATGATTA
1 TATTAAG-TTATAATGATTA
6622356 ATTACTAAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
20 14 0.29
21 34 0.71
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (20 bp):
TATTAAGTTATAATGATTAC
Found at i:6625480 original size:18 final size:18
Alignment explanation
Indices: 6625446--6625479 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
6625436 AGCACTTTTT
6625446 GAGTTTAATTATAAAAAG
1 GAGTTTAATTATAAAAAG
6625464 GAGTTTAA-TATAAAAA
1 GAGTTTAATTATAAAAA
6625480 ATAAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (18 bp):
GAGTTTAATTATAAAAAG
Found at i:6630486 original size:2 final size:2
Alignment explanation
Indices: 6630479--6630513 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
6630469 CTCTAACTAA
*
6630479 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6630514 ATGATGCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:6632180 original size:24 final size:23
Alignment explanation
Indices: 6632143--6632191 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
6632133 TTATTTATTG
*
6632143 TTAATTAATTTTAAA-TTAAATAT
1 TTAATTAATATTAAAGTTAAA-AT
6632166 TTAATATAATATTAAAGTTAAAAT
1 TTAAT-TAATATTAAAGTTAAAAT
6632190 TT
1 TT
6632192 TTTTTCATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TTAATTAATATTAAAGTTAAAAT
Found at i:6632876 original size:22 final size:22
Alignment explanation
Indices: 6632838--6632900 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 22
6632828 TTATGTCATA
6632838 TAATTATATTATTAAAAAATTAAT
1 TAATT-TATTA-TAAAAAATTAAT
6632862 T-ATTTATTATAAAAAATTAAT
1 TAATTTATTATAAAAAATTAAT
6632883 TAATTTATTA-AAATAAAT
1 TAATTTATTATAAA-AAAT
6632901 ATTTTCTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 16 0.43
22 17 0.46
23 3 0.08
24 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TAATTTATTATAAAAAATTAAT
Found at i:6633885 original size:2 final size:2
Alignment explanation
Indices: 6633819--6633872 Score: 58
Period size: 2 Copynumber: 27.5 Consensus size: 2
6633809 ATTCTAAAAA
* *
6633819 AT AT AT A- AGT AT AT AT AT AT AT AT AT AC AT AT AT AC A- AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
6633860 AT AT CT AT AT AT A
1 AT AT AT AT AT AT A
6633873 CGCTTTTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
1 2 0.05
2 41 0.93
3 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:6635885 original size:18 final size:18
Alignment explanation
Indices: 6635852--6635886 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6635842 GCACTTTTTG
*
6635852 AGTTTAATTATAAAAAAA
1 AGTTTAATAATAAAAAAA
*
6635870 AGTTTAATAATCAAAAA
1 AGTTTAATAATAAAAAA
6635887 GAAAATTCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (18 bp):
AGTTTAATAATAAAAAAA
Found at i:6643864 original size:22 final size:22
Alignment explanation
Indices: 6643821--6643866 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
6643811 TTTGAATCTC
* *
6643821 ATAAAAAAATCAGAATACAAAA
1 ATAAAAAAATAAAAATACAAAA
6643843 ATAAAAAAATAAAAATGA-AAAA
1 ATAAAAAAATAAAAAT-ACAAAA
6643865 AT
1 AT
6643867 TGTATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (22 bp):
ATAAAAAAATAAAAATACAAAA
Found at i:6644785 original size:17 final size:18
Alignment explanation
Indices: 6644753--6644786 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6644743 TTATTTAATT
*
6644753 AAAAAAAAGTACAAAAAC
1 AAAAAAAAATACAAAAAC
6644771 AAAAAAAAATA-AAAAA
1 AAAAAAAAATACAAAAA
6644787 TAATAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAAAAATACAAAAAC
Found at i:6644836 original size:2 final size:2
Alignment explanation
Indices: 6644829--6644870 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
6644819 CTAATTTAAA
*
6644829 AT AT AT AT A- AT A- AT A- AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6644868 AT A
1 AT A
6644871 CACATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 3 0.09
2 32 0.91
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:6645195 original size:23 final size:23
Alignment explanation
Indices: 6645169--6645217 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
6645159 AAAACAAAAG
* *
6645169 AAAAACGTAAAAGA-AAAAATAA
1 AAAAAAGTAAAAAATAAAAATAA
6645191 AAAAAAGTAAAAAATAAAAATAA
1 AAAAAAGTAAAAAATAAAAATAA
6645214 AAAA
1 AAAA
6645218 TGAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.82, C:0.02, G:0.06, T:0.10
Consensus pattern (23 bp):
AAAAAAGTAAAAAATAAAAATAA
Found at i:6645201 original size:10 final size:9
Alignment explanation
Indices: 6645182--6645233 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
6645172 AACGTAAAAG
6645182 AAAAAATAA
1 AAAAAATAA
6645191 AAAAAAGTAA
1 AAAAAA-TAA
*
6645201 AAAATAAAAA
1 AAAA-AATAA
6645211 TAAAAAATGAA
1 -AAAAAAT-AA
6645222 AATAAAATAA
1 AA-AAAATAA
6645232 AA
1 AA
6645234 CTCACTGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 6 0.17
10 17 0.47
11 13 0.36
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:6645204 original size:17 final size:16
Alignment explanation
Indices: 6645177--6645233 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 16
6645167 AGAAAAACGT
6645177 AAAAGAAAAAATAAAA
1 AAAAGAAAAAATAAAA
6645193 AAAAGTAAAAAATAAAA
1 AAAAG-AAAAAATAAAA
*
6645210 ATAAAAAATGAAAATAAAA
1 A-AAAGAA--AAAATAAAA
6645229 TAAAA
1 -AAAA
6645234 CTCACTGGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
16 5 0.14
17 14 0.40
18 3 0.09
19 12 0.34
20 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (16 bp):
AAAAGAAAAAATAAAA
Found at i:6645721 original size:21 final size:21
Alignment explanation
Indices: 6645697--6645741 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6645687 AATATTTATT
*
6645697 AAATATATAAAAA-TAATAAAA
1 AAATATA-AAAAAGTAAAAAAA
*
6645718 AAATGTAAAAAAGTAAAAAAA
1 AAATATAAAAAAGTAAAAAAA
6645739 AAA
1 AAA
6645742 AACAAATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (21 bp):
AAATATAAAAAAGTAAAAAAA
Found at i:6645858 original size:17 final size:16
Alignment explanation
Indices: 6645813--6645864 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
6645803 AAATATTTAT
*
6645813 AAAAATGTAAAAAA-A
1 AAAAAAGTAAAAAAGA
*
6645828 AAAAAA-AAACAAAAGA
1 AAAAAAGTAA-AAAAGA
6645844 AAAAAAGGTAAAAAAGA
1 AAAAAA-GTAAAAAAGA
6645861 AAAA
1 AAAA
6645865 TTAGGATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.07
15 9 0.30
16 7 0.23
17 10 0.33
18 2 0.07
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAAAAGTAAAAAAGA
Found at i:6647202 original size:22 final size:22
Alignment explanation
Indices: 6647159--6647202 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
6647149 CCCACACTTA
* ** *
6647159 TGATGATTTATTATTAATTTAT
1 TGATGATTTAATAAAAAATTAT
6647181 TGATGATTTAATAAAAAATTAT
1 TGATGATTTAATAAAAAATTAT
6647203 CAATGATTAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (22 bp):
TGATGATTTAATAAAAAATTAT
Found at i:6647296 original size:11 final size:11
Alignment explanation
Indices: 6647252--6647298 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
6647242 TACAATTAAC
6647252 TTATTAGTAA-
1 TTATTAGTAAG
* *
6647262 TTATTACTATG
1 TTATTAGTAAG
*
6647273 TTATTAGTGAG
1 TTATTAGTAAG
*
6647284 TTATTATTAAG
1 TTATTAGTAAG
6647295 TTAT
1 TTAT
6647299 CAATTTATTA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (11 bp):
TTATTAGTAAG
Found at i:6647297 original size:22 final size:21
Alignment explanation
Indices: 6647246--6647325 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 21
6647236 CTTATTTACA
*
6647246 ATTAACTTATTAGTAATTATT
1 ATTAAGTTATTAGTAATTATT
* * *
6647267 ACTATGTTATTAGTGAGTTATT
1 ATTAAGTTATTAGT-AATTATT
* *
6647289 ATTAAGTTATCA--ATTTATT
1 ATTAAGTTATTAGTAATTATT
* *
6647308 ATTAAATTATTAATAATT
1 ATTAAGTTATTAGTAATT
6647326 TACTATTATA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
19 16 0.36
21 14 0.31
22 15 0.33
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (21 bp):
ATTAAGTTATTAGTAATTATT
Found at i:6647326 original size:22 final size:22
Alignment explanation
Indices: 6647208--6647341 Score: 69
Period size: 22 Copynumber: 6.2 Consensus size: 22
6647198 ATTATCAATG
6647208 ATTAATTAATTTATTATGTAAATT
1 ATTAA-TAATTTATTAT-TAAATT
* * * ** *
6647232 ATCACTTATTTACAATTAACTT
1 ATTAATAATTTATTATTAAATT
* * **
6647254 ATTAGTAA-TTATTACTATGTT
1 ATTAATAATTTATTATTAAATT
* * * *
6647275 ATTAGTGAGTTATTATTAAGTT
1 ATTAATAATTTATTATTAAATT
*
6647297 A-T--CAATTTATTATTAAATT
1 ATTAATAATTTATTATTAAATT
* *
6647316 ATTAATAATTTACTATTATATT
1 ATTAATAATTTATTATTAAATT
6647338 ATTA
1 ATTA
6647342 TGTATTTACT
Statistics
Matches: 82, Mismatches: 24, Indels: 10
0.71 0.21 0.09
Matches are distributed among these distances:
19 14 0.17
20 1 0.01
21 16 0.20
22 40 0.49
23 8 0.10
24 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTAATAATTTATTATTAAATT
Found at i:6647348 original size:22 final size:22
Alignment explanation
Indices: 6647300--6647361 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
6647290 TTAAGTTATC
* *
6647300 AATTTATTATTAAATTATTAAT
1 AATTTACTATTATATTATTAAT
6647322 AATTTACTATTATATTATT-AT
1 AATTTACTATTATATTATTAAT
* *
6647343 GTATTTACTACTATATTAT
1 -AATTTACTATTATATTAT
6647362 CATTGATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (22 bp):
AATTTACTATTATATTATTAAT
Found at i:6647370 original size:22 final size:22
Alignment explanation
Indices: 6647323--6647373 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
6647313 ATTATTAATA
* *
6647323 ATTTACTATTATATTATTATGT
1 ATTTACTACTATATTATCATGT
6647345 ATTTACTACTATATTATCAT-T
1 ATTTACTACTATATTATCATGT
6647366 GATTTACT
1 -ATTTACT
6647374 GCTTGCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (22 bp):
ATTTACTACTATATTATCATGT
Found at i:6647485 original size:22 final size:21
Alignment explanation
Indices: 6647402--6647537 Score: 78
Period size: 22 Copynumber: 6.2 Consensus size: 21
6647392 TATCACAAAA
* * *
6647402 TTATTATAGATTTTATTACTAAA
1 TTATTAT-GA-TTTAATATTAAG
* * *
6647425 TTATTTATGATTCACTATCAAG
1 TTA-TTATGATTTAATATTAAG
* *
6647447 TTATTACTGAATT-ATATTAAA
1 TTATTA-TGATTTAATATTAAG
6647468 TTATCTATGATTTAATATTAAG
1 TTAT-TATGATTTAATATTAAG
*
6647490 TTATAACTGA-TTAACTATTAAG
1 TTATTA-TGATTTAA-TATTAAG
* * *
6647512 TTATCGATAATTTACTATTAAG
1 TTAT-TATGATTTAATATTAAG
6647534 TTAT
1 TTAT
6647538 ATTAATTTAC
Statistics
Matches: 89, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
21 22 0.25
22 54 0.61
23 9 0.10
24 4 0.04
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (21 bp):
TTATTATGATTTAATATTAAG
Found at i:6647525 original size:44 final size:43
Alignment explanation
Indices: 6647444--6647538 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
6647434 ATTCACTATC
* * *
6647444 AAGTTATTACTGAATTATATTAAATTATCTATGATTTAATATT
1 AAGTTATAACTGAATTATATTAAATTATCGATAATTTAATATT
* *
6647487 AAGTTATAACTG-ATTAACTATTAAGTTATCGATAATTTACTATT
1 AAGTTATAACTGAATT-A-TATTAAATTATCGATAATTTAATATT
6647531 AAGTTATA
1 AAGTTATA
6647539 TTAATTTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 3 0.07
43 12 0.27
44 30 0.67
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.45
Consensus pattern (43 bp):
AAGTTATAACTGAATTATATTAAATTATCGATAATTTAATATT
Found at i:6647698 original size:22 final size:21
Alignment explanation
Indices: 6647673--6647740 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
6647663 ACATAAACAT
*
6647673 ATTTACTATTAAATTATCAGTA
1 ATTTA-TATTAAATTATCAATA
*
6647695 ATTTATTATTAAATTATCATTA
1 ATTTA-TATTAAATTATCAATA
*
6647717 ATTTATCATTAAGTTATCAATA
1 ATTTAT-ATTAAATTATCAATA
6647739 AT
1 AT
6647741 AAACTACCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 1 0.02
22 40 0.98
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (21 bp):
ATTTATATTAAATTATCAATA
Found at i:6647711 original size:11 final size:11
Alignment explanation
Indices: 6647680--6647735 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
6647670 CATATTTACT
6647680 ATTAAATTATC
1 ATTAAATTATC
* * *
6647691 AGTAATTTATT
1 ATTAAATTATC
6647702 ATTAAATTATC
1 ATTAAATTATC
*
6647713 ATTAATTTATC
1 ATTAAATTATC
*
6647724 ATTAAGTTATC
1 ATTAAATTATC
6647735 A
1 A
6647736 ATAATAAACT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (11 bp):
ATTAAATTATC
Found at i:6647887 original size:22 final size:23
Alignment explanation
Indices: 6647826--6647887 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 23
6647816 TATTATAATT
* *
6647826 GATTTGCTACTAAATTATTATTC
1 GATTTACTACTAAATTATTATCC
* * **
6647849 -ATTTATTATTACGTTATTA-CC
1 GATTTACTACTAAATTATTATCC
6647870 GATTTACTACTAAATTAT
1 GATTTACTACTAAATTAT
6647888 CAATTATTAA
Statistics
Matches: 28, Mismatches: 10, Indels: 3
0.68 0.24 0.07
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.48
Consensus pattern (23 bp):
GATTTACTACTAAATTATTATCC
Found at i:6657249 original size:15 final size:16
Alignment explanation
Indices: 6657226--6657259 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
6657216 AAAAAATCAG
6657226 AATACAAAAATAAAAA
1 AATACAAAAATAAAAA
*
6657242 AATA-AAAAATGAAAA
1 AATACAAAAATAAAAA
6657257 AAT
1 AAT
6657260 TGTATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (16 bp):
AATACAAAAATAAAAA
Found at i:6658183 original size:17 final size:18
Alignment explanation
Indices: 6658151--6658184 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6658141 TTATTTAATT
*
6658151 AAAAAAAAGTACAAAAAC
1 AAAAAAAAATACAAAAAC
6658169 AAAAAAAAATA-AAAAA
1 AAAAAAAAATACAAAAA
6658185 TAATAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAAAAATACAAAAAC
Found at i:6658234 original size:2 final size:2
Alignment explanation
Indices: 6658227--6658268 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
6658217 ATAATTTAAA
*
6658227 AT AT AT AT A- AT A- AT A- AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6658266 AT A
1 AT A
6658269 CACATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 3 0.09
2 32 0.91
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:6658593 original size:23 final size:23
Alignment explanation
Indices: 6658567--6658615 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
6658557 AAAACAAAAG
* *
6658567 AAAAACGTAAAAGA-AAAAATAA
1 AAAAAAGTAAAAAATAAAAATAA
6658589 AAAAAAGTAAAAAATAAAAATAA
1 AAAAAAGTAAAAAATAAAAATAA
6658612 AAAA
1 AAAA
6658616 TGAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.82, C:0.02, G:0.06, T:0.10
Consensus pattern (23 bp):
AAAAAAGTAAAAAATAAAAATAA
Found at i:6658599 original size:10 final size:9
Alignment explanation
Indices: 6658580--6658631 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
6658570 AACGTAAAAG
6658580 AAAAAATAA
1 AAAAAATAA
6658589 AAAAAAGTAA
1 AAAAAA-TAA
*
6658599 AAAATAAAAA
1 AAAA-AATAA
6658609 TAAAAAATGAA
1 -AAAAAAT-AA
6658620 AATAAAATAA
1 AA-AAAATAA
6658630 AA
1 AA
6658632 CTCACTGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 6 0.17
10 17 0.47
11 13 0.36
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:6658602 original size:17 final size:16
Alignment explanation
Indices: 6658575--6658631 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 16
6658565 AGAAAAACGT
6658575 AAAAGAAAAAATAAAA
1 AAAAGAAAAAATAAAA
6658591 AAAAGTAAAAAATAAAA
1 AAAAG-AAAAAATAAAA
*
6658608 ATAAAAAATGAAAATAAAA
1 A-AAAGAA--AAAATAAAA
6658627 TAAAA
1 -AAAA
6658632 CTCACTGGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
16 5 0.14
17 14 0.40
18 3 0.09
19 12 0.34
20 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (16 bp):
AAAAGAAAAAATAAAA
Found at i:6659120 original size:21 final size:21
Alignment explanation
Indices: 6659096--6659140 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6659086 AATATTTATT
*
6659096 AAATATATAAAAA-TAATAAAA
1 AAATATA-AAAAAGTAAAAAAA
*
6659117 AAATGTAAAAAAGTAAAAAAA
1 AAATATAAAAAAGTAAAAAAA
6659138 AAA
1 AAA
6659141 AACAAATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (21 bp):
AAATATAAAAAAGTAAAAAAA
Found at i:6659244 original size:117 final size:118
Alignment explanation
Indices: 6659049--6659261 Score: 272
Period size: 117 Copynumber: 1.8 Consensus size: 118
6659039 TATTTTAAGA
** * * *
6659049 ATCAAGTGAGTCATACAAAAAATTTTAAAATCATTAAAATATTTATTAAATATATAAAAATAATA
1 ATCAAGTGAGTCATACAAAAAATTTTAAAATCAAAAAAATATTTATAAAATATATAAAAAAAAAA
* *
6659114 AAAAAATGTAAAAAA-GTAAAAAAAAAAAACAAATACATGATATAACTTTCAT
66 AAAAAAAGAAAAAAAGGTAAAAAAAAAAAACAAATACATGATATAACTTTCAT
* *
6659166 ATCATGTGAGTTCATA-AAAAAA-TTTAAAATCTAAAAAAATATTTATAAAA-ATGTAAAAAAAA
1 ATCAAGTGAG-TCATACAAAAAATTTTAAAATC-AAAAAAATATTTATAAAATATAT-AAAAAAA
*
6659228 AAAAAACAAAAGAAAAAAAGGTAAAAAAGAAAAA
63 AAAAAA-AAAAGAAAAAAAGGTAAAAAAAAAAAA
6659262 TTAGGATAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
116 12 0.15
117 41 0.51
118 15 0.19
119 13 0.16
ACGTcount: A:0.63, C:0.06, G:0.07, T:0.24
Consensus pattern (118 bp):
ATCAAGTGAGTCATACAAAAAATTTTAAAATCAAAAAAATATTTATAAAATATATAAAAAAAAAA
AAAAAAAGAAAAAAAGGTAAAAAAAAAAAACAAATACATGATATAACTTTCAT
Found at i:6660599 original size:22 final size:22
Alignment explanation
Indices: 6660556--6660599 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
6660546 ACCACACTTA
* ** *
6660556 TGATGATTTATTATTAATTTAT
1 TGATGATTTAATAAAAAATTAT
6660578 TGATGATTTAATAAAAAATTAT
1 TGATGATTTAATAAAAAATTAT
6660600 CAATGATTAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (22 bp):
TGATGATTTAATAAAAAATTAT
Found at i:6660692 original size:11 final size:11
Alignment explanation
Indices: 6660648--6660694 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
6660638 TACAATTAAC
6660648 TTATTAGTAA-
1 TTATTAGTAAG
* *
6660658 TTATTACTATG
1 TTATTAGTAAG
*
6660669 TTATTAGTGAG
1 TTATTAGTAAG
*
6660680 TTATTATTAAG
1 TTATTAGTAAG
6660691 TTAT
1 TTAT
6660695 CAATTTATTA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (11 bp):
TTATTAGTAAG
Found at i:6660693 original size:22 final size:21
Alignment explanation
Indices: 6660642--6660721 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 21
6660632 CTTATTTACA
*
6660642 ATTAACTTATTAGTAATTATT
1 ATTAAGTTATTAGTAATTATT
* * *
6660663 ACTATGTTATTAGTGAGTTATT
1 ATTAAGTTATTAGT-AATTATT
* *
6660685 ATTAAGTTATCA--ATTTATT
1 ATTAAGTTATTAGTAATTATT
* *
6660704 ATTAAATTATTAATAATT
1 ATTAAGTTATTAGTAATT
6660722 TACTATTATA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
19 16 0.36
21 14 0.31
22 15 0.33
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (21 bp):
ATTAAGTTATTAGTAATTATT
Found at i:6660722 original size:22 final size:22
Alignment explanation
Indices: 6660605--6660737 Score: 76
Period size: 22 Copynumber: 6.2 Consensus size: 22
6660595 ATTATCAATG
6660605 ATTAATTAATTTATTATTAAATT
1 ATTAA-TAATTTATTATTAAATT
* * * ** *
6660628 ATCACTTATTTACAATTAACTT
1 ATTAATAATTTATTATTAAATT
* * **
6660650 ATTAGTAA-TTATTACTATGTT
1 ATTAATAATTTATTATTAAATT
* * * *
6660671 ATTAGTGAGTTATTATTAAGTT
1 ATTAATAATTTATTATTAAATT
*
6660693 A-T--CAATTTATTATTAAATT
1 ATTAATAATTTATTATTAAATT
* *
6660712 ATTAATAATTTACTATTATATT
1 ATTAATAATTTATTATTAAATT
6660734 ATTA
1 ATTA
6660738 TGTATTTACT
Statistics
Matches: 82, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
19 14 0.17
20 1 0.01
21 16 0.20
22 48 0.59
23 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (22 bp):
ATTAATAATTTATTATTAAATT
Found at i:6660744 original size:22 final size:22
Alignment explanation
Indices: 6660696--6660757 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
6660686 TTAAGTTATC
* *
6660696 AATTTATTATTAAATTATTAAT
1 AATTTACTATTATATTATTAAT
6660718 AATTTACTATTATATTATT-AT
1 AATTTACTATTATATTATTAAT
* *
6660739 GTATTTACTACTATATTAT
1 -AATTTACTATTATATTAT
6660758 CATTGATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (22 bp):
AATTTACTATTATATTATTAAT
Found at i:6660766 original size:22 final size:22
Alignment explanation
Indices: 6660719--6660769 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
6660709 ATTATTAATA
* *
6660719 ATTTACTATTATATTATTATGT
1 ATTTACTACTATATTATCATGT
6660741 ATTTACTACTATATTATCAT-T
1 ATTTACTACTATATTATCATGT
6660762 GATTTACT
1 -ATTTACT
6660770 GCTTGCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (22 bp):
ATTTACTACTATATTATCATGT
Found at i:6660881 original size:22 final size:21
Alignment explanation
Indices: 6660798--6660933 Score: 78
Period size: 22 Copynumber: 6.2 Consensus size: 21
6660788 TATCACAAAA
* * *
6660798 TTATTATAGATTTTATTACTAAA
1 TTATTAT-GA-TTTAATATTAAG
* * *
6660821 TTATTTATGATTCACTATCAAG
1 TTA-TTATGATTTAATATTAAG
* *
6660843 TTATTACTGAATT-ATATTAAA
1 TTATTA-TGATTTAATATTAAG
6660864 TTATCTATGATTTAATATTAAG
1 TTAT-TATGATTTAATATTAAG
*
6660886 TTATAACTGA-TTAACTATTAAG
1 TTATTA-TGATTTAA-TATTAAG
* * *
6660908 TTATCGATAATTTACTATTAAG
1 TTAT-TATGATTTAATATTAAG
6660930 TTAT
1 TTAT
6660934 ATTAATTTAC
Statistics
Matches: 89, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
21 22 0.25
22 54 0.61
23 9 0.10
24 4 0.04
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (21 bp):
TTATTATGATTTAATATTAAG
Found at i:6660921 original size:44 final size:43
Alignment explanation
Indices: 6660840--6660934 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
6660830 ATTCACTATC
* * *
6660840 AAGTTATTACTGAATTATATTAAATTATCTATGATTTAATATT
1 AAGTTATAACTGAATTATATTAAATTATCGATAATTTAATATT
* *
6660883 AAGTTATAACTG-ATTAACTATTAAGTTATCGATAATTTACTATT
1 AAGTTATAACTGAATT-A-TATTAAATTATCGATAATTTAATATT
6660927 AAGTTATA
1 AAGTTATA
6660935 TTAATTTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 3 0.07
43 12 0.27
44 30 0.67
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.45
Consensus pattern (43 bp):
AAGTTATAACTGAATTATATTAAATTATCGATAATTTAATATT
Found at i:6660941 original size:21 final size:21
Alignment explanation
Indices: 6660873--6660985 Score: 91
Period size: 22 Copynumber: 5.2 Consensus size: 21
6660863 ATTATCTATG
* *
6660873 ATTTAATATTAAGTTATAACTG
1 ATTTACTATTAAGTTATAA-TA
* *
6660895 ATTAACTATTAAGTTATCGATA
1 ATTTACTATTAAGTTAT-AATA
*
6660917 ATTTACTATTAAGTTATATTA
1 ATTTACTATTAAGTTATAATA
* * *
6660938 ATTTACTTTTAATTTTTAATA
1 ATTTACTATTAAGTTATAATA
* * * *
6660959 ATTAAGTATTAAATTATCAATT
1 ATTTACTATTAAGTTAT-AATA
6660981 ATTTA
1 ATTTA
6660986 TTACTATGTT
Statistics
Matches: 71, Mismatches: 18, Indels: 4
0.76 0.19 0.04
Matches are distributed among these distances:
21 31 0.44
22 39 0.55
23 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTTACTATTAAGTTATAATA
Found at i:6660951 original size:11 final size:11
Alignment explanation
Indices: 6660915--6660952 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6660905 AAGTTATCGA
6660915 TAATTTACTAT
1 TAATTTACTAT
*
6660926 TAAGTTA-TAT
1 TAATTTACTAT
*
6660936 TAATTTACTTT
1 TAATTTACTAT
6660947 TAATTT
1 TAATTT
6660953 TTAATAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (11 bp):
TAATTTACTAT
Found at i:6661093 original size:22 final size:21
Alignment explanation
Indices: 6661068--6661135 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
6661058 ACATAAACAT
*
6661068 ATTTACTATTAAATTATCAGTA
1 ATTTA-TATTAAATTATCAATA
*
6661090 ATTTATTATTAAATTATCATTA
1 ATTTA-TATTAAATTATCAATA
*
6661112 ATTTATCATTAAGTTATCAATA
1 ATTTAT-ATTAAATTATCAATA
6661134 AT
1 AT
6661136 AAACTACCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 1 0.02
22 40 0.98
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (21 bp):
ATTTATATTAAATTATCAATA
Found at i:6661106 original size:11 final size:11
Alignment explanation
Indices: 6661075--6661130 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
6661065 CATATTTACT
6661075 ATTAAATTATC
1 ATTAAATTATC
* * *
6661086 AGTAATTTATT
1 ATTAAATTATC
6661097 ATTAAATTATC
1 ATTAAATTATC
*
6661108 ATTAATTTATC
1 ATTAAATTATC
*
6661119 ATTAAGTTATC
1 ATTAAATTATC
6661130 A
1 A
6661131 ATAATAAACT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (11 bp):
ATTAAATTATC
Done.