Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 27 of 117
Found at i:7211646 original size:9 final size:9
Alignment explanation
Indices: 7211613--7211639 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7211603 GTCAATCATT
7211613 GAAAAAAAA
1 GAAAAAAAA
7211622 GAAAAAAAA
1 GAAAAAAAA
7211631 GAAAAAAAA
1 GAAAAAAAA
7211640 AGCAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:7216067 original size:14 final size:14
Alignment explanation
Indices: 7216048--7216080 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7216038 GATGGGACAT
7216048 AAAAAAAAAGTA-AA
1 AAAAAAAAAG-AGAA
7216062 AAAAAAAAAGAGAA
1 AAAAAAAAAGAGAA
7216076 AAAAA
1 AAAAA
7216081 CAAACAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAGAGAA
Found at i:7216311 original size:17 final size:17
Alignment explanation
Indices: 7216286--7216322 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7216276 ATACAGAAGT
*
7216286 ATCCGATAATTGAAAGC
1 ATCCAATAATTGAAAGC
7216303 ATCCAATAATTGAAAGC
1 ATCCAATAATTGAAAGC
7216320 ATC
1 ATC
7216323 TAACATGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (17 bp):
ATCCAATAATTGAAAGC
Found at i:7217427 original size:15 final size:15
Alignment explanation
Indices: 7217407--7217436 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7217397 AGAAGAGTTT
*
7217407 TTGCATTTGCATCAC
1 TTGCATCTGCATCAC
7217422 TTGCATCTGCATCAC
1 TTGCATCTGCATCAC
7217437 AAGAAAGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (15 bp):
TTGCATCTGCATCAC
Found at i:7218014 original size:22 final size:22
Alignment explanation
Indices: 7217967--7218059 Score: 91
Period size: 22 Copynumber: 4.2 Consensus size: 22
7217957 TAAAATTTGT
*
7217967 AAGACCTCTGAGCATAA-TCTC
1 AAGACCTCTGAGCATAACTTTC
* *
7217988 TAAGATCTCTGGGCATAACTTTC
1 -AAGACCTCTGAGCATAACTTTC
* * *
7218011 AAGACCTCCGAACATAATCTTTA
1 AAGACCTCTGAGCATAA-CTTTC
*
7218034 AAG-CCTCTGTGCATAACTTTC
1 AAGACCTCTGAGCATAACTTTC
7218055 AAGAC
1 AAGAC
7218060 GTTTAAGTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
21 7 0.12
22 39 0.70
23 10 0.18
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (22 bp):
AAGACCTCTGAGCATAACTTTC
Found at i:7218015 original size:44 final size:44
Alignment explanation
Indices: 7217967--7218059 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
7217957 TAAAATTTGT
* * *
7217967 AAGACCTCTGAGCATAATCTCT-AAGATCTCTGGGCATAACTTTC
1 AAGACCTCCGAACATAATCTCTAAAG-CCTCTGGGCATAACTTTC
* *
7218011 AAGACCTCCGAACATAATCTTTAAAGCCTCTGTGCATAACTTTC
1 AAGACCTCCGAACATAATCTCTAAAGCCTCTGGGCATAACTTTC
7218055 AAGAC
1 AAGAC
7218060 GTTTAAGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 40 0.93
45 3 0.07
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (44 bp):
AAGACCTCCGAACATAATCTCTAAAGCCTCTGGGCATAACTTTC
Found at i:7218175 original size:22 final size:22
Alignment explanation
Indices: 7218150--7218212 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
7218140 AGACCTCTGT
7218150 GCATAATCTCTAAAGCCTCCGG
1 GCATAATCTCTAAAGCCTCCGG
* *
7218172 GCATAA-CTTTCAAGACCGT-CGG
1 GCATAATCTCTAAAG-CC-TCCGG
7218194 GCATAATCTCTAAAGCCTC
1 GCATAATCTCTAAAGCCTC
7218213 TGCACACAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
21 7 0.21
22 19 0.58
23 7 0.21
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (22 bp):
GCATAATCTCTAAAGCCTCCGG
Found at i:7218182 original size:172 final size:172
Alignment explanation
Indices: 7217896--7218363 Score: 690
Period size: 172 Copynumber: 2.7 Consensus size: 172
7217886 GCCATGTTTA
*
7217896 AAAAGATTTTTAAATTTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTCAAAGATTTTAAA
1 AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTAAA
* *
7217961 ATTTGTAAGACCTCTGAGCATAATCTCTAAGATCTCTGGGCATAACTTTCAAGACCTCCGAACAT
66 ATTTGTAAGACCTCTGAGCATAATCTCTAAGACCTCCGGGCATAACTTTCAAGACCTCCGAACAT
* ** *
7218026 AATCTTTAAAGCCTCTGTGCATAACTTTCAAGACGTTTAAGT
131 AATCTCTAAAGCCTCTGCACACAACTTTCAAGACGTTTAAGT
* * * *
7218068 AAAAGATTTTAAAATTTTTAAAGTTTTATTACCTCTGATTATGATGAGCATTCAAAGATTTTAAA
1 AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTAAA
* **
7218133 ATTTGTAAGACCTCTGTGCATAATCTCTAA-AGCCTCCGGGCATAACTTTCAAGACCGT-CGGGC
66 ATTTGTAAGACCTCTGAGCATAATCTCTAAGA-CCTCCGGGCATAACTTTCAAGACC-TCCGAAC
*
7218196 ATAATCTCTAAAGCCTCTGCACACAATTTTCAAGACGTTTAAGT
129 ATAATCTCTAAAGCCTCTGCACACAACTTTCAAGACGTTTAAGT
* * *
7218240 AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTTTGATTATGAGGAGCATTCAAAGATTTTGAG
1 AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTAAA
* * * *
7218305 ATTTGTAAGACCT-TCGGGCATAATCTCTAAGACCTTCTGGCACAACTTTCAAGACCTCC
66 ATTTGTAAGACCTCT-GAGCATAATCTCTAAGACCTCCGGGCATAACTTTCAAGACCTCC
7218364 ATACATGATT
Statistics
Matches: 265, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
171 3 0.01
172 260 0.98
173 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (172 bp):
AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTAAA
ATTTGTAAGACCTCTGAGCATAATCTCTAAGACCTCCGGGCATAACTTTCAAGACCTCCGAACAT
AATCTCTAAAGCCTCTGCACACAACTTTCAAGACGTTTAAGT
Found at i:7218450 original size:55 final size:55
Alignment explanation
Indices: 7218366--7218473 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 55
7218356 AGACCTCCAT
* * *
7218366 ACATGATTTCTAAAACCTGCGGGCATAAATTCGATTCGCGGTGTTATCTCGATTG
1 ACATGATTTCTAAAACCTCCAGGCATAAATTCGATTCGCGATGTTATCTCGATTG
* * * *
7218421 ACATGTTTTCTAAGACCTCCAGGCATAAATTCGATTTGTGATGTTATCTCGAT
1 ACATGATTTCTAAAACCTCCAGGCATAAATTCGATTCGCGATGTTATCTCGAT
7218474 CAATTCTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (55 bp):
ACATGATTTCTAAAACCTCCAGGCATAAATTCGATTCGCGATGTTATCTCGATTG
Found at i:7218553 original size:87 final size:88
Alignment explanation
Indices: 7218431--7218611 Score: 276
Period size: 87 Copynumber: 2.1 Consensus size: 88
7218421 ACATGTTTTC
* * *
7218431 TAAGACCTCCAGGCATAAATTCGATTTGTGATGTTATCTCGATCAATTCTTTATCTTTCGACTTG
1 TAAGACCTCCAGGCATAAATTCGATTCGAGATGTTATCTCGATCAATTCTTTATCTTTCAACTTG
*
7218496 TGGTGTTA-TCCCGTCGATTCTG
66 TGGTGTTATTCCAGTCGATTCTG
* *
7218518 TAAGACCTCCAGGCATAAATTTGATTCGCAG-TGTTATCTCGATCGATTCTTTATCTTTCAACTT
1 TAAGACCTCCAGGCATAAATTCGATTCG-AGATGTTATCTCGATCAATTCTTTATCTTTCAACTT
*
7218582 GTGGTGTTATTTCAGTCGATTCTG
65 GTGGTGTTATTCCAGTCGATTCTG
7218606 TAAGAC
1 TAAGAC
7218612 TTTCGGGCAT
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
87 66 0.78
88 19 0.22
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (88 bp):
TAAGACCTCCAGGCATAAATTCGATTCGAGATGTTATCTCGATCAATTCTTTATCTTTCAACTTG
TGGTGTTATTCCAGTCGATTCTG
Found at i:7218625 original size:23 final size:23
Alignment explanation
Indices: 7218599--7218648 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7218589 TATTTCAGTC
* *
7218599 GATTCTGTAAGACTTTCGGGCAT
1 GATTCTGTAAGACCTCCGGGCAT
7218622 GATTCTGTAAGACCTCCGGGCAT
1 GATTCTGTAAGACCTCCGGGCAT
7218645 GATT
1 GATT
7218649 TTTTAGTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (23 bp):
GATTCTGTAAGACCTCCGGGCAT
Found at i:7218691 original size:204 final size:196
Alignment explanation
Indices: 7218422--7218928 Score: 561
Period size: 204 Copynumber: 2.5 Consensus size: 196
7218412 TCTCGATTGA
* * * ** *** *
7218422 CATGTTTTCTAAGACCTCCAGGCATAAATTCGATTTGTGATGTTATCTCGATCAATTCTTTATCT
1 CATGATTTCTAAGACCTCCGGGCATAATTTTAATTCACGATGTTATCTCGATCGATTCTTTATCT
* *
7218487 TTCGACTTGTGGTGTTATCCCGTCGATTCTGTAAGACCTCCAGGCATAAATTTGATTC--GCAGT
66 TTTGACTTGTGGTGTTATCCAGTCGATTCTGTAAGACCTCCAGGCATAAATTTGATTCATGC--T
* * * ** *
7218550 GTTATCTCGATCGATTCT-TTATCTTTCAACTTGTGGTGTTATTTCAGTCGATTCTGTAAGACTT
129 GTTATCCCGATCGATT-TATTAT-TTTCAACTGGCGGTGTTATCCCAATCGATTCTGTAAGACTT
7218614 TCGGG
192 TCGGG
* * *
7218619 CATGATTCTGTAAGACCTCCGGGCATGATTTTTTAGTCGATTCACGGTGTTATCTCGATCGATTC
1 CATGATT-TCTAAGACCTCCGGGCAT-A-ATTTTA----ATTCACGATGTTATCTCGATCGATTC
* * *
7218684 TTTATCTTTTGACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGGTATAATTTTGATT
59 TTTATCTTTTGACTTGTGGTGTTATCC-AGTCGATTCTGTAAGACCTCCAGGCATAAATTTGATT
** *
7218749 CATGCTGTTATCCCGATCGATTTATTATTTTTGACTGGCGGTGTTATCCCAATCGATTTTGTAAG
123 CATGCTGTTATCCCGATCGATTTATTATTTTCAACTGGCGGTGTTATCCCAATCGATTCTGTAAG
7218814 ACTTTCGGG
188 ACTTTCGGG
* ** * * *
7218823 CATGATTTCTAAGACCTCCGGGTATAATTTTAATTTGCGATGTTATCCCGATTGATTTTTTTATC
1 CATGATTTCTAAGACCTCCGGGCATAATTTTAATTCACGATGTTATCTCGATCGA-TTCTTTATC
* *
7218888 TTTTAACTTGTGGTGTTATCTCAGTTGATTCTGTAAGACCT
65 TTTTGACTTGTGGTGTTATC-CAGTCGATTCTGTAAGACCT
7218929 TCGGGCATGA
Statistics
Matches: 260, Mismatches: 37, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
197 24 0.09
198 61 0.23
199 2 0.01
200 2 0.01
201 5 0.02
202 1 0.00
203 16 0.06
204 93 0.36
205 54 0.21
207 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (196 bp):
CATGATTTCTAAGACCTCCGGGCATAATTTTAATTCACGATGTTATCTCGATCGATTCTTTATCT
TTTGACTTGTGGTGTTATCCAGTCGATTCTGTAAGACCTCCAGGCATAAATTTGATTCATGCTGT
TATCCCGATCGATTTATTATTTTCAACTGGCGGTGTTATCCCAATCGATTCTGTAAGACTTTCGG
G
Found at i:7218733 original size:94 final size:90
Alignment explanation
Indices: 7218622--7218830 Score: 237
Period size: 87 Copynumber: 2.3 Consensus size: 90
7218612 TTTCGGGCAT
* *
7218622 GATTCTGTAAGACCTCCGGGCATGATTTTTTAGTCGATTCACGGTGTTATCTCGATCGATTCT-T
1 GATTCTGTAAGACCTCCGGGCATGATTTTTT--T-GATTCACGCTGTTATCCCGATCGATT-TAT
* * * *
7218686 TATCTTTTGACTTGTGGTGTTATCCTAGTC
62 TAT-TTTTGACTGGCGGTGTTATCCCAATC
** *
7218716 GATTCTGTAAGACCTCCGGG--T-ATAATTTTGATTCATGCTGTTATCCCGATCGATTTATTATT
1 GATTCTGTAAGACCTCCGGGCATGATTTTTTTGATTCACGCTGTTATCCCGATCGATTTATTATT
7218778 TTTGACTGGCGGTGTTATCCCAATC
66 TTTGACTGGCGGTGTTATCCCAATC
* * *
7218803 GATTTTGTAAGACTTTCGGGCATGATTT
1 GATTCTGTAAGACCTCCGGGCATGATTT
7218831 CTAAGACCTC
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
87 40 0.41
88 27 0.28
89 2 0.02
90 2 0.02
91 5 0.05
92 1 0.01
94 20 0.21
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (90 bp):
GATTCTGTAAGACCTCCGGGCATGATTTTTTTGATTCACGCTGTTATCCCGATCGATTTATTATT
TTTGACTGGCGGTGTTATCCCAATC
Found at i:7218985 original size:111 final size:110
Alignment explanation
Indices: 7218716--7219057 Score: 381
Period size: 109 Copynumber: 3.1 Consensus size: 110
7218706 TATCCTAGTC
* *
7218716 GATTCTGTAAGACCTCCGGGTATAATTTTGATTCATGCTGTTATCCCGATCGATTTATTATTTTT
1 GATTCTGTAAGACCTCCGGGTATAATTTTGATTCACGATGTTATCCCGATCGATTTATTATTTTT
* * * * * *
7218781 GACTGGCGGTGTTATCCCAATCGATTTTGTAAGACTTTCGGGCAT
66 GACTTGTGGTGTTATCCCAGTTGATTCTGTAAGACCTTCGGGCAT
* * ** * *
7218826 GATT-TCTAAGACCTCCGGGTATAATTTTAATTTGCGATGTTATCCCGATTGATTTTTTTATCTT
1 GATTCTGTAAGACCTCCGGGTATAATTTTGATTCACGATGTTATCCCGATCGA-TTTATTAT-TT
* *
7218890 TTAACTTGTGGTGTTATCTCAGTTGATTCTGTAAGACCTTCGGGCAT
64 TTGACTTGTGGTGTTATCCCAGTTGATTCTGTAAGACCTTCGGGCAT
* * * * * *
7218937 GATTCTGTAAGATCTCTGAGCATAATTTTGATTCACGGTGTTAT-CCGATCGATTCATTATTTTT
1 GATTCTGTAAGACCTCCGGGTATAATTTTGATTCACGATGTTATCCCGATCGATTTATTATTTTT
* * *
7219001 GAC-TGATGGTGTTATCCCAGTT-ATTCTATAAGACC-TCCGACAT
66 GACTTG-TGGTGTTATCCCAGTTGATTCTGTAAGACCTTCGGGCAT
*
7219044 GATTC-CTAAGACCT
1 GATTCTGTAAGACCT
7219058 TCAGGCATGA
Statistics
Matches: 193, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
106 7 0.04
107 11 0.06
108 14 0.07
109 62 0.32
110 17 0.09
111 52 0.27
112 30 0.16
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (110 bp):
GATTCTGTAAGACCTCCGGGTATAATTTTGATTCACGATGTTATCCCGATCGATTTATTATTTTT
GACTTGTGGTGTTATCCCAGTTGATTCTGTAAGACCTTCGGGCAT
Found at i:7219530 original size:35 final size:34
Alignment explanation
Indices: 7219491--7219566 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
7219481 TGACTTACGA
7219491 TTTAATCTAAGT-TAACATCATTTTTTGATTCACGG
1 TTTAATCTAAGTCT--CATCATTTTTTGATTCACGG
* ** * *
7219526 TTTAAACTCGGTCTCTTTATTTTTTGATTCACGG
1 TTTAATCTAAGTCTCATCATTTTTTGATTCACGG
7219560 TTTAATC
1 TTTAATC
7219567 CTGATCCTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 24 0.71
35 9 0.26
36 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.49
Consensus pattern (34 bp):
TTTAATCTAAGTCTCATCATTTTTTGATTCACGG
Found at i:7220995 original size:18 final size:18
Alignment explanation
Indices: 7220959--7221010 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
7220949 TTTTTGATAA
*
7220959 TTTTATATATT-ATTATTT
1 TTTTATAT-TTAAGTATTT
7220977 TTGTTAT-TTTAAGTATTT
1 TT-TTATATTTAAGTATTT
*
7220995 TTTTATATTTATGTAT
1 TTTTATATTTAAGTAT
7221011 GATAAGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 6 0.21
18 19 0.66
19 4 0.14
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTATATTTAAGTATTT
Found at i:7221026 original size:22 final size:21
Alignment explanation
Indices: 7220995--7221041 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7220985 TTAAGTATTT
* *
7220995 TTTTATATTTATGTATGATAAG
1 TTTTAAATTTAT-TAGGATAAG
*
7221017 TTTTAAATTTGTTAGGATAAG
1 TTTTAAATTTATTAGGATAAG
7221038 TTTT
1 TTTT
7221042 TTGTTTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (21 bp):
TTTTAAATTTATTAGGATAAG
Found at i:7221423 original size:17 final size:15
Alignment explanation
Indices: 7221403--7221522 Score: 73
Period size: 16 Copynumber: 7.7 Consensus size: 15
7221393 CTAAAACCCT
7221403 TAAAATCCAAAATCTC
1 TAAAATCCAAAATC-C
7221419 ATAAAATCCAAAATCC
1 -TAAAATCCAAAATCC
* **
7221435 TAAAATCCGAGACCCC
1 TAAAATCC-AAAATCC
*
7221451 TAAAAATCTAAAATCTC
1 T-AAAATCCAAAATC-C
* **
7221468 TTAAATCC-AACCCC
1 TAAAATCCAAAATCC
*
7221482 TAAAATCCGAAACTCC
1 TAAAATCC-AAAATCC
* *
7221498 AAAAATCC-AAACCC
1 TAAAATCCAAAATCC
*
7221512 CAAAATCCAAA
1 TAAAATCCAAA
7221523 CTCTTAAATC
Statistics
Matches: 80, Mismatches: 17, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
14 19 0.24
15 13 0.16
16 26 0.32
17 22 0.28
ACGTcount: A:0.49, C:0.30, G:0.03, T:0.18
Consensus pattern (15 bp):
TAAAATCCAAAATCC
Found at i:7221441 original size:8 final size:8
Alignment explanation
Indices: 7221393--7221442 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 8
7221383 TCTTAGGTTT
*
7221393 CTAAAACC
1 CTAAAATC
7221401 CTTAAAATC
1 C-TAAAATC
7221410 C-AAAATC
1 CTAAAATC
7221417 TCATAAAATC
1 -C-TAAAATC
7221427 C-AAAATC
1 CTAAAATC
7221434 CTAAAATC
1 CTAAAATC
7221442 C
1 C
7221443 GAGACCCCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 13 0.36
8 9 0.25
9 8 0.22
10 6 0.17
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (8 bp):
CTAAAATC
Found at i:7221481 original size:31 final size:32
Alignment explanation
Indices: 7221421--7221522 Score: 99
Period size: 30 Copynumber: 3.3 Consensus size: 32
7221411 AAAATCTCAT
7221421 AAAATCCAAAATCCTAAAATCCGAGACCCCTA
1 AAAATCCAAAATCCTAAAATCCGAGACCCCTA
* *
7221453 AAAATCTAAAATCTCTTAAATCC-A-ACCCCT-
1 AAAATCCAAAATC-CTAAAATCCGAGACCCCTA
* * *
7221483 AAAATCCGAAACTCCAAAAATCC-AAACCCC--
1 AAAATCC-AAAATCCTAAAATCCGAGACCCCTA
7221513 AAAATCCAAA
1 AAAATCCAAA
7221523 CTCTTAAATC
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
29 3 0.05
30 21 0.34
31 16 0.26
32 13 0.21
33 8 0.13
ACGTcount: A:0.49, C:0.31, G:0.03, T:0.17
Consensus pattern (32 bp):
AAAATCCAAAATCCTAAAATCCGAGACCCCTA
Found at i:7221489 original size:14 final size:14
Alignment explanation
Indices: 7221470--7221543 Score: 69
Period size: 14 Copynumber: 5.1 Consensus size: 14
7221460 AAAATCTCTT
7221470 AAATCC-AACCCCTA
1 AAATCCAAACCCC-A
*
7221484 AAATCCGAAACTCCAA
1 AAATCC-AAAC-CCCA
7221500 AAATCCAAACCCCA
1 AAATCCAAACCCCA
* **
7221514 AAATCCAAACTCTT
1 AAATCCAAACCCCA
*
7221528 AAATCAAAACCCCA
1 AAATCCAAACCCCA
7221542 AA
1 AA
7221544 CCACAAAATC
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
14 32 0.67
15 4 0.08
16 10 0.21
17 2 0.04
ACGTcount: A:0.50, C:0.35, G:0.01, T:0.14
Consensus pattern (14 bp):
AAATCCAAACCCCA
Found at i:7221504 original size:30 final size:29
Alignment explanation
Indices: 7221470--7221543 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
7221460 AAAATCTCTT
7221470 AAATCC-AACCCCTAAAATCCGAAACTCCAA
1 AAATCCAAACCCC-AAAATCC-AAACTCCAA
**
7221500 AAATCCAAACCCCAAAATCCAAACT-CTT
1 AAATCCAAACCCCAAAATCCAAACTCCAA
*
7221528 AAATCAAAACCCCAAA
1 AAATCCAAACCCCAAA
7221544 CCACAAAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 16 0.40
29 5 0.12
30 13 0.32
31 6 0.15
ACGTcount: A:0.50, C:0.35, G:0.01, T:0.14
Consensus pattern (29 bp):
AAATCCAAACCCCAAAATCCAAACTCCAA
Found at i:7221565 original size:14 final size:14
Alignment explanation
Indices: 7221539--7221594 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
7221529 AATCAAAACC
7221539 CCAAACCAC-AAAAT
1 CCAAACC-CTAAAAT
7221553 CCAAACCCTAAAATCT
1 CCAAACCCTAAAA--T
*
7221569 CCAAACTCTAAAAT
1 CCAAACCCTAAAAT
*
7221583 CAAAACCCTAAA
1 CCAAACCCTAAA
7221595 CCTTCCATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 1 0.03
14 22 0.61
16 13 0.36
ACGTcount: A:0.52, C:0.34, G:0.00, T:0.14
Consensus pattern (14 bp):
CCAAACCCTAAAAT
Found at i:7221573 original size:16 final size:16
Alignment explanation
Indices: 7221552--7221583 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7221542 AACCACAAAA
7221552 TCCAAACCCTAAAATC
1 TCCAAACCCTAAAATC
*
7221568 TCCAAACTCTAAAATC
1 TCCAAACCCTAAAATC
7221584 AAAACCCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (16 bp):
TCCAAACCCTAAAATC
Found at i:7221587 original size:51 final size:49
Alignment explanation
Indices: 7221499--7221596 Score: 151
Period size: 51 Copynumber: 2.0 Consensus size: 49
7221489 CGAAACTCCA
*
7221499 AAAATCCAAACCCCAAAATCCAAACTCTTAAATCAAAACCCCAAACCAC
1 AAAATCCAAACCCCAAAATCCAAACTCTAAAATCAAAACCCCAAACCAC
* *
7221548 AAAATCCAAACCCTAAAATCTCCAAACTCTAAAATCAAAACCCTAAACC
1 AAAATCCAAACCCCAAAA--TCCAAACTCTAAAATCAAAACCCCAAACC
7221597 TTCCATATCC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 17 0.39
51 27 0.61
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (49 bp):
AAAATCCAAACCCCAAAATCCAAACTCTAAAATCAAAACCCCAAACCAC
Found at i:7223037 original size:18 final size:20
Alignment explanation
Indices: 7223004--7223040 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
7222994 ATATTAAACT
7223004 AATATTAATATTTTATTATC
1 AATATTAATATTTTATTATC
7223024 AATATT-AT-TTTTATTAT
1 AATATTAATATTTTATTAT
7223041 TATTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
AATATTAATATTTTATTATC
Found at i:7224074 original size:2 final size:2
Alignment explanation
Indices: 7224067--7224093 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7224057 CAAATCCAAA
7224067 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7224094 CATTTTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7225465 original size:29 final size:29
Alignment explanation
Indices: 7225408--7225500 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
7225398 TTTAAACATT
*
7225408 ATATTA-ATTAATAAA--TTTATAATTTAA
1 ATATTATATTAA-AAATTTTTATAATTCAA
*
7225435 ATATTATATTAAAAATTTTTAAAATTCAA
1 ATATTATATTAAAAATTTTTATAATTCAA
* * *
7225464 ATACTATATTAAATATTATATATAATTCAA
1 ATATTATATTAAAAATT-TTTATAATTCAA
*
7225494 AAATTAT
1 ATATTAT
7225501 TCATGAAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 9 0.17
28 5 0.09
29 25 0.46
30 15 0.28
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
ATATTATATTAAAAATTTTTATAATTCAA
Found at i:7226019 original size:19 final size:19
Alignment explanation
Indices: 7225970--7226020 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7225960 AAATATAAAA
7225970 TATAAAATTTTAATTTTAT
1 TATAAAATTTTAATTTTAT
*
7225989 TA-AATATATTTATATTTT-T
1 TATAAAAT-TTTA-ATTTTAT
7226008 TATAAAATTTTAA
1 TATAAAATTTTAA
7226021 ATCATATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 5 0.19
19 13 0.48
20 9 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATAAAATTTTAATTTTAT
Found at i:7226920 original size:2 final size:2
Alignment explanation
Indices: 7226913--7226948 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7226903 AATCAATCTC
7226913 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7226949 GGATGCATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7228741 original size:24 final size:25
Alignment explanation
Indices: 7228686--7228737 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
7228676 TTTCCCTTTA
*
7228686 TTTTAAAAATATTTTATTAAAGATT
1 TTTTAAAAATATTTTAGTAAAGATT
7228711 TTTTAAAAATA-TTTAGTAAA-ATT
1 TTTTAAAAATATTTTAGTAAAGATT
7228734 TTTT
1 TTTT
7228738 TAAAGGATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.27
24 8 0.31
25 11 0.42
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTTAAAAATATTTTAGTAAAGATT
Found at i:7230081 original size:7 final size:7
Alignment explanation
Indices: 7230049--7230095 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
7230039 TATAATTATT
7230049 TTTAAAA
1 TTTAAAA
*
7230056 -TAAAATA
1 TTTAAA-A
7230063 TTTAACAA
1 TTTAA-AA
7230071 TTTAAAA
1 TTTAAAA
7230078 TTTAAAA
1 TTTAAAA
*
7230085 TTTAATA
1 TTTAAAA
7230092 TTTA
1 TTTA
7230096 CAATATTTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
6 4 0.12
7 20 0.59
8 9 0.26
9 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (7 bp):
TTTAAAA
Found at i:7240975 original size:35 final size:33
Alignment explanation
Indices: 7240936--7241000 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
7240926 ATATGTAAAT
7240936 ATATTATTATCAATTTCTTAA-AAATTTTATTAGAC
1 ATATTATTATC-ATTT-TTAACAAA-TTTATTAGAC
7240971 ATATTATTATCATTTTTAACAAATTTATTA
1 ATATTATTATCATTTTTAACAAATTTATTA
7241001 ATTTTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 11 0.38
34 7 0.24
35 11 0.38
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.51
Consensus pattern (33 bp):
ATATTATTATCATTTTTAACAAATTTATTAGAC
Found at i:7253287 original size:20 final size:18
Alignment explanation
Indices: 7253262--7253299 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
7253252 TTTTGCATGA
7253262 ATTTGCATGACTAATATTAT
1 ATTTGCATGA-TAAT-TTAT
7253282 ATTTGCATGATAATTTAT
1 ATTTGCATGATAATTTAT
7253300 TTGGCTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (18 bp):
ATTTGCATGATAATTTAT
Found at i:7253332 original size:21 final size:21
Alignment explanation
Indices: 7253308--7253450 Score: 76
Period size: 21 Copynumber: 6.5 Consensus size: 21
7253298 ATTTGGCTAT
* *
7253308 TATATTTGTTTGCATGATTAA
1 TATATTTATTTGTATGATTAA
* **
7253329 TATATTTATTTGTGTGATTTG
1 TATATTTATTTGTATGATTAA
*
7253350 T-TAATGTATTTGTATGATTATTAA
1 TAT-ATTTATTTGTATG---ATTAA
7253374 TATATTTATTTGTATGATTATA
1 TATATTTATTTGTATGATTA-A
* *
7253396 TTTAATGTGA-TTGTATGATTATCAA
1 TAT-AT-TTATTTGTATGA-T-T-AA
* *
7253421 TATATTTATTTGCAT-ATTTA
1 TATATTTATTTGTATGATTAA
*
7253441 TTTATTTATT
1 TATATTTATT
7253451 ATTATTGCAT
Statistics
Matches: 93, Mismatches: 17, Indels: 25
0.69 0.13 0.19
Matches are distributed among these distances:
20 11 0.12
21 33 0.35
22 4 0.04
23 13 0.14
24 26 0.28
25 5 0.05
26 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (21 bp):
TATATTTATTTGTATGATTAA
Found at i:7253375 original size:45 final size:47
Alignment explanation
Indices: 7253310--7253432 Score: 162
Period size: 47 Copynumber: 2.6 Consensus size: 47
7253300 TTGGCTATTA
* * *
7253310 TATTTGTTTGCATGATTAATATATTTATTTGTGTGATT-T-GTTAATG
1 TATTTGTATG-ATTATTAATATATTTATTTGTATGATTATAGTTAATG
*
7253356 TATTTGTATGATTATTAATATATTTATTTGTATGATTATATTTAATG
1 TATTTGTATGATTATTAATATATTTATTTGTATGATTATAGTTAATG
*
7253403 TGA-TTGTATGATTATCAATATATTTATTTG
1 T-ATTTGTATGATTATTAATATATTTATTTG
7253433 CATATTTATT
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
45 25 0.36
46 10 0.14
47 33 0.48
48 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.14, T:0.56
Consensus pattern (47 bp):
TATTTGTATGATTATTAATATATTTATTTGTATGATTATAGTTAATG
Found at i:7253423 original size:47 final size:46
Alignment explanation
Indices: 7253327--7253444 Score: 161
Period size: 47 Copynumber: 2.6 Consensus size: 46
7253317 TTGCATGATT
* * *
7253327 AATATATTTATTTGTGTGATTT-GTTAATGTATTTGTATGATTATT
1 AATATATTTATTTGTATGATTTATTTAATGTATTTGTATGATTATC
7253372 AATATATTTATTTGTATGATTATATTTAATGTGA-TTGTATGATTATC
1 AATATATTTATTTGTATGATT-TATTTAATGT-ATTTGTATGATTATC
*
7253419 AATATATTTATTTGCAT-ATTTATTTA
1 AATATATTTATTTGTATGATTTATTTA
7253445 TTTATTATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
45 26 0.39
46 4 0.06
47 35 0.53
48 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.56
Consensus pattern (46 bp):
AATATATTTATTTGTATGATTTATTTAATGTATTTGTATGATTATC
Found at i:7253671 original size:18 final size:19
Alignment explanation
Indices: 7253620--7253695 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 19
7253610 TGATTTCATG
7253620 ATTATATATTTGCATGAATAGTT
1 ATTATATATTTGCATG---A-TT
7253643 ATTAGTATATTTGCATGA-T
1 ATTA-TATATTTGCATGATT
*
7253662 ATTATATATTTACATGATT
1 ATTATATATTTGCATGATT
7253681 ATTAT-TA-TTGCATGA
1 ATTATATATTTGCATGA
7253696 CGTTATTGCT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
17 7 0.14
18 14 0.29
19 11 0.22
21 1 0.02
23 4 0.08
24 12 0.24
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (19 bp):
ATTATATATTTGCATGATT
Found at i:7256492 original size:43 final size:45
Alignment explanation
Indices: 7256430--7256516 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 45
7256420 TGTTGTCCAT
* *
7256430 AATGGCACGGGAGAAGAGCC-GGTTCGTCGTCCCAATGTTTTTGA
1 AATGGCACGGGAGAAGAGCCAGATTCCTCGTCCCAATGTTTTTGA
* * * *
7256474 AATGG-ACTGGAGAGGAGCCAGATTCCTTGTCCTAATGTTTTTG
1 AATGGCACGGGAGAAGAGCCAGATTCCTCGTCCCAATGTTTTTG
7256517 CTCGACATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 12 0.33
44 24 0.67
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (45 bp):
AATGGCACGGGAGAAGAGCCAGATTCCTCGTCCCAATGTTTTTGA
Found at i:7258751 original size:21 final size:20
Alignment explanation
Indices: 7258704--7258751 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
7258694 CCATAACTTT
7258704 TTATTTTTTTATTTTTCTAC
1 TTATTTTTTTATTTTTCTAC
*
7258724 TCAATTTTTTTATATGTTTCTA-
1 T-TATTTTTTTAT-T-TTTCTAC
7258746 TTATTT
1 TTATTT
7258752 AATTTATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
20 1 0.04
21 14 0.61
22 2 0.09
23 6 0.26
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATTTTTTTATTTTTCTAC
Found at i:7260163 original size:18 final size:17
Alignment explanation
Indices: 7260136--7260173 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7260126 GATTCTTTTT
*
7260136 AAAAAAATCAAAAATAA
1 AAAAAAATCAAAAACAA
7260153 AAAACAAATCAAAAACAA
1 AAAA-AAATCAAAAACAA
7260171 AAA
1 AAA
7260174 GGAAAATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.82, C:0.11, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAAAATCAAAAACAA
Found at i:7260634 original size:5 final size:6
Alignment explanation
Indices: 7260619--7260658 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
7260609 ATGTATAATA
* *
7260619 AAAAAC AAAAAC AAAAAT TAAAAC AAAAA- AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
7260659 TCTCAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.85, C:0.10, G:0.00, T:0.05
Consensus pattern (6 bp):
AAAAAC
Found at i:7260669 original size:23 final size:22
Alignment explanation
Indices: 7260618--7260669 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
7260608 TATGTATAAT
*
7260618 AAAAAACAAAAACAAAAATTAA
1 AAAAAAAAAAAACAAAAATTAA
*
7260640 AACAAAAAAAAAACAAAAATCTCA
1 AA-AAAAAAAAAACAAAAAT-TAA
7260664 AAAAAA
1 AAAAAA
7260670 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 2 0.08
23 20 0.77
24 4 0.15
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.08
Consensus pattern (22 bp):
AAAAAAAAAAAACAAAAATTAA
Found at i:7263570 original size:23 final size:23
Alignment explanation
Indices: 7263540--7263584 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7263530 AACATGATTT
7263540 CCATCATCACATAAACCTTGTTG
1 CCATCATCACATAAACCTTGTTG
7263563 CCATCATCACATAAACCTTGTT
1 CCATCATCACATAAACCTTGTT
7263585 ACCTTACCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (23 bp):
CCATCATCACATAAACCTTGTTG
Found at i:7263742 original size:14 final size:15
Alignment explanation
Indices: 7263711--7263744 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7263701 AGAGAAAGTG
7263711 AAAAAAAATGATGAT
1 AAAAAAAATGATGAT
*
7263726 AAAAAAAATG-TGTT
1 AAAAAAAATGATGAT
7263740 AAAAA
1 AAAAA
7263745 TAAAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAAAAAATGATGAT
Found at i:7264663 original size:18 final size:19
Alignment explanation
Indices: 7264640--7264678 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
7264630 TATATATTAA
*
7264640 AATACCATATT-TGATACT
1 AATACCACATTGTGATACT
7264658 AATACCACATTGTGATACT
1 AATACCACATTGTGATACT
7264677 AA
1 AA
7264679 AAATAGTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (19 bp):
AATACCACATTGTGATACT
Found at i:7265800 original size:42 final size:43
Alignment explanation
Indices: 7265710--7265802 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
7265700 AGTATTATGA
*
7265710 GGTGATATCCGAATACTAAAGTATGAAATTACATTTTCTTTGT
1 GGTGATATCCGAATACTAAAGTATGAAATTACATTTTCTTAGT
* *
7265753 GGTGATATCCGAGTACTAAAGTATG-AATTTCATTTTCTTAGT
1 GGTGATATCCGAATACTAAAGTATGAAATTACATTTTCTTAGT
7265795 GGTGATAT
1 GGTGATAT
7265803 TCAAGACATT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 23 0.49
43 24 0.51
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (43 bp):
GGTGATATCCGAATACTAAAGTATGAAATTACATTTTCTTAGT
Found at i:7265990 original size:137 final size:136
Alignment explanation
Indices: 7265752--7266418 Score: 787
Period size: 137 Copynumber: 5.0 Consensus size: 136
7265742 ATTTTCTTTG
* *
7265752 TGGTGATATCCGAGTACTAAAGTATGAATTTCATTTTCTTAGTGGTGATATTCAAGACATTTTCA
1 TGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTAGTGGTGATATCCAAGACATTTTCA
* *
7265817 AAAATACTC-GATGGTGATATTCAAGTTTAAAATTTGAATTTGCATTCTTTCTCTACATTTGCAT
66 AAAACACTCAG-TGGTGATATTCAAGTTTAAAGTTTGAATTTGCATTCTTTCTCTACATTTGCAT
7265881 TTTCTCGA
130 TTTCTC-A
* * * *
7265889 TGGTGGTATCCGAGTATTAAAGTATAAATTTCATTTTCTAAGTTGTGATATCCAAGACATTTTCA
1 TGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTAGTGGTGATATCCAAGACATTTTCA
* *
7265954 AAAACACTCAGTGGTGATATCCAAGTTTAAAGTTTGAATTTACATTCTTTCTCTACATTTGCATT
66 AAAACACTCAGTGGTGATATTCAAGTTTAAAGTTTGAATTTGCATTCTTTCTCTACATTTGCATT
7266019 TTCTCA
131 TTCTCA
* * *
7266025 GTGGTGATATCCGAGTACTAACGTATGAATTTCATTTTCTTGGTGGTGATATCCAAGACATTTTC
1 -TGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTAGTGGTGATATCCAAGACATTTTC
* * *** * * * *
7266090 AAAAACATTAAGCAATGATATCCAAGTTTAAAGTTTGAATTTACATTTTTTTCTCTATATTTGCG
65 AAAAACACTCAGTGGTGATATTCAAGTTTAAAGTTTGAATTTGCA-TTCTTTCTCTACATTTGC-
* * **
7266155 CTTTTTTGG
128 ATTTTCTCA
* * *
7266164 TGGT-ATTATCCGAGTATTAAAGTATGAATTTCATTTTCTTGGTAGTGATATCCAAGACATTTTT
1 TGGTGA-TATCCGAGTATTAAAGTATGAATTTCATTTTCTTAGTGGTGATATCCAAGACATTTTC
* ** * * *
7266228 AAAATCACTCAGTGGTGATATTTGAGTTTAAAGTTTGAATTTGTATTCTTTATCTACATTTGTAT
65 AAAAACACTCAGTGGTGATATTCAAGTTTAAAGTTTGAATTTGCATTCTTTCTCTACATTTGCAT
7266293 TTTCTC-
130 TTTCTCA
* *
7266299 -GGTG--AT--GA-TATCT-GAGTATGAATTTCATTTTCTT-GATGGTGATATTCAAGACATTTT
1 TGGTGATATCCGAGTAT-TAAAGTATGAATTTCATTTTCTTAG-TGGTGATATCCAAGACATTTT
*
7266356 CAAAATCACTCAGTGGTGATATTC--G-----AGTTTGAATTTGCATTCTTTCTCTACATTTG-A
64 CAAAAACACTCAGTGGTGATATTCAAGTTTAAAGTTTGAATTTGCATTCTTTCTCTACATTTGCA
7266413 TTTTCT
129 TTTTCT
7266419 TGGTAGTGAT
Statistics
Matches: 465, Mismatches: 57, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
121 7 0.02
122 29 0.06
127 1 0.00
128 1 0.00
129 64 0.14
130 3 0.01
132 2 0.00
134 3 0.01
136 6 0.01
137 235 0.51
138 109 0.23
139 5 0.01
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (136 bp):
TGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTAGTGGTGATATCCAAGACATTTTCA
AAAACACTCAGTGGTGATATTCAAGTTTAAAGTTTGAATTTGCATTCTTTCTCTACATTTGCATT
TTCTCA
Found at i:7266278 original size:275 final size:271
Alignment explanation
Indices: 7265741--7266365 Score: 800
Period size: 275 Copynumber: 2.3 Consensus size: 271
7265731 TATGAAATTA
* *
7265741 CATTTTCTTTGTGGTGATATCCGAGTACTAAAGTATGAATTTCATTTTCTTAGTGGTGATATTCA
1 CATTTTC-TCGTGGTGATATCCGAGTACT-AAGTATGAATTTCATTTTCTTGGTGGTGATATTCA
* * * * *
7265806 AGACATTTTCAAAAATACTCGATGGTGATATTCAAGTTTAAAATTTGAATTTGCATTCTTTCTCT
64 AGACATTTTCAAAAACACTAGA-GATGATATCCAAGTTTAAAATTTGAATTTACATTCTTTCTCT
* *
7265871 ACATTTGCATTTTCTCGATGGTGGTATCCGAGTATTAAAGTATAAATTTCATTTTCTAAGTTGTG
128 ACATTTGCATTTTCTCGATGGTAGTATCCGAGTATTAAAGTATAAATTTCATTTTCTAAGTAGTG
7265936 ATATCCAAGACATTTTCAAAAACACTCAGTGGTGATATCCAAGTTTAAAGTTTGAATTTACATTC
193 ATATCCAAGACATTTTCAAAAACACTCAGTGGTGATATCCAAGTTTAAAGTTTGAATTTACATTC
*
7266001 TTTCTCTACATTTG
258 TTTATCTACATTTG
*
7266015 CATTTTCTCAGTGGTGATATCCGAGTACTAACGTATGAATTTCATTTTCTTGGTGGTGATATCCA
1 CATTTTCTC-GTGGTGATATCCGAGTACTAA-GTATGAATTTCATTTTCTTGGTGGTGATATTCA
* * *
7266080 AGACATTTTCAAAAACATTA-AGCAATGATATCCAAGTTTAAAGTTTGAATTTACATTTTTTTCT
64 AGACATTTTCAAAAACACTAGAG--ATGATATCCAAGTTTAAAATTTGAATTTACA-TTCTTTCT
* * * * * * **
7266144 CTATATTTGCGCTTTT-TTGGTGGTATTATCCGAGTATTAAAGTATGAATTTCATTTTCTTGGTA
126 CTACATTTGC-ATTTTCTCGATGGTAGTATCCGAGTATTAAAGTATAAATTTCATTTTCTAAGTA
* * *** **
7266208 GTGATATCCAAGACATTTTTAAAATCACTCAGTGGTGATATTTGAGTTTAAAGTTTGAATTTGTA
190 GTGATATCCAAGACATTTTCAAAAACACTCAGTGGTGATATCCAAGTTTAAAGTTTGAATTTACA
7266273 TTCTTTATCTACATTTG
255 TTCTTTATCTACATTTG
* * *
7266290 TATTTTCTC--GGTG--AT--GA-TATCTGAGTATGAATTTCATTTTCTTGATGGTGATATTCAA
1 CATTTTCTCGTGGTGATATCCGAGTA-CTAAGTATGAATTTCATTTTCTTGGTGGTGATATTCAA
*
7266348 GACATTTTCAAAATCACT
65 GACATTTTCAAAAACACT
7266366 CAGTGGTGAT
Statistics
Matches: 309, Mismatches: 35, Indels: 21
0.85 0.10 0.06
Matches are distributed among these distances:
267 50 0.16
268 5 0.02
270 2 0.01
272 5 0.02
273 4 0.01
274 101 0.33
275 138 0.45
276 4 0.01
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (271 bp):
CATTTTCTCGTGGTGATATCCGAGTACTAAGTATGAATTTCATTTTCTTGGTGGTGATATTCAAG
ACATTTTCAAAAACACTAGAGATGATATCCAAGTTTAAAATTTGAATTTACATTCTTTCTCTACA
TTTGCATTTTCTCGATGGTAGTATCCGAGTATTAAAGTATAAATTTCATTTTCTAAGTAGTGATA
TCCAAGACATTTTCAAAAACACTCAGTGGTGATATCCAAGTTTAAAGTTTGAATTTACATTCTTT
ATCTACATTTG
Found at i:7266570 original size:99 final size:100
Alignment explanation
Indices: 7266443--7266623 Score: 251
Period size: 99 Copynumber: 1.8 Consensus size: 100
7266433 GAATGTTAAA
* * * *
7266443 AAAATCATTTGCCTTTTCTTGGTAGTGATATTCGAGTGTTAAAG-TTGAAATTGCA-TTTTTTCA
1 AAAATCATTTGCATTTTCTAGGTAGTGATATCCGAGTGTTAAAGCTAG-AATTGCATTTTTTTCA
7266506 ATGGTGATATTCGAGTTTCCTTTAGTGGTAATATCC
65 ATGGTGATATTCGAGTTTCCTTTAGTGGTAATATCC
* * *
7266542 AAAATCATTTGCATCTTT-TAGGTGGTGATATCCGAGTGTTAAAGCTAGAATTGTATTTTTTTTA
1 AAAATCATTTGCAT-TTTCTAGGTAGTGATATCCGAGTGTTAAAGCTAGAATTGCATTTTTTTCA
*
7266606 ATGGTGATATTTGAGTTT
65 ATGGTGATATTCGAGTTT
7266624 TTTTCGGTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
99 42 0.59
100 29 0.41
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (100 bp):
AAAATCATTTGCATTTTCTAGGTAGTGATATCCGAGTGTTAAAGCTAGAATTGCATTTTTTTCAA
TGGTGATATTCGAGTTTCCTTTAGTGGTAATATCC
Found at i:7267810 original size:12 final size:11
Alignment explanation
Indices: 7267774--7267856 Score: 62
Period size: 11 Copynumber: 7.4 Consensus size: 11
7267764 TTTACCATAA
7267774 TTTTTT-TTAT
1 TTTTTTATTAT
7267784 TTTTTTATTCAAT
1 TTTTTTATT--AT
7267797 TTTTTTA-TAT
1 TTTTTTATTAT
* *
7267807 ATTTCTATTAT
1 TTTTTTATTAT
* *
7267818 TTAATTTATGATT
1 TT-TTTTATTA-T
*
7267831 TTTTTTGTTAT
1 TTTTTTATTAT
*
7267842 TTTTATATTAT
1 TTTTTTATTAT
7267853 TTTT
1 TTTT
7267857 GTATAAAATT
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
10 13 0.23
11 20 0.36
12 11 0.20
13 12 0.21
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTTTATTAT
Found at i:7267815 original size:23 final size:22
Alignment explanation
Indices: 7267772--7267815 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
7267762 TTTTTACCAT
* *
7267772 AATTTTTTTTATTTTTTTATTC
1 AATTTTTTTTATATTTCTATTC
7267794 AATTTTTTTATATATTTCTATT
1 AATTTTTTT-TATATTTCTATT
7267816 ATTTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (22 bp):
AATTTTTTTTATATTTCTATTC
Found at i:7268035 original size:19 final size:20
Alignment explanation
Indices: 7267997--7268038 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
7267987 AATAAAGAAT
*
7267997 AATAATTAATAATTAATAAA
1 AATAATTAAAAATTAATAAA
*
7268017 AATAA-TAAAAATTAGTAAA
1 AATAATTAAAAATTAATAAA
7268036 AAT
1 AAT
7268039 GTAAGAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATTAAAAATTAATAAA
Found at i:7269259 original size:17 final size:17
Alignment explanation
Indices: 7269237--7269271 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7269227 TTATGAGTGT
7269237 TAAGATCATCTT-GGTAA
1 TAAGATCA-CTTCGGTAA
7269254 TAAGATCACTTCGGTAA
1 TAAGATCACTTCGGTAA
7269271 T
1 T
7269272 TACAATACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (17 bp):
TAAGATCACTTCGGTAA
Found at i:7269561 original size:84 final size:84
Alignment explanation
Indices: 7269420--7269582 Score: 256
Period size: 84 Copynumber: 1.9 Consensus size: 84
7269410 AAAACTAAAC
* * * *
7269420 TTGGGAGTTCAGTTACATGTAAGGAAAGTTATAGTATCCCATAATGCCCTCAAATTGGT-CTCAA
1 TTGGGAGTTAAATTACATATAAGGAAAGTTATAGCATCCCATAATGCCCTCAAATTGGTAC-CAA
7269484 TTAATCTTAAATTATAAGGT
65 TTAATCTTAAATTATAAGGT
*
7269504 TTGGGAGTTAAATTATATATAAGGAAAGTTATAGCATCCCATAATGCCCTCAAATTGGTACCAAT
1 TTGGGAGTTAAATTACATATAAGGAAAGTTATAGCATCCCATAATGCCCTCAAATTGGTACCAAT
*
7269569 TAATTTTAAATTAT
66 TAATCTTAAATTAT
7269583 CTTTTTAATC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 71 0.99
85 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (84 bp):
TTGGGAGTTAAATTACATATAAGGAAAGTTATAGCATCCCATAATGCCCTCAAATTGGTACCAAT
TAATCTTAAATTATAAGGT
Found at i:7269827 original size:12 final size:12
Alignment explanation
Indices: 7269810--7269847 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
7269800 TAAATTATAT
7269810 ATACATGATCAA
1 ATACATGATCAA
7269822 ATACATGATCAA
1 ATACATGATCAA
*
7269834 ATATATGATCAA
1 ATACATGATCAA
7269846 AT
1 AT
7269848 GCAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (12 bp):
ATACATGATCAA
Found at i:7271198 original size:20 final size:20
Alignment explanation
Indices: 7271175--7271213 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7271165 CCTAAACTAA
* *
7271175 ATAAAATTAAAATTAAAAAC
1 ATAAAAATAAAAATAAAAAC
7271195 ATAAAAATAAAAATAAAAA
1 ATAAAAATAAAAATAAAAA
7271214 TCTCAAAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
ATAAAAATAAAAATAAAAAC
Found at i:7273065 original size:16 final size:16
Alignment explanation
Indices: 7273024--7273103 Score: 61
Period size: 16 Copynumber: 4.7 Consensus size: 16
7273014 ACTAATATTA
7273024 TATTTGCATGATTAGTATT
1 TATTTGCATGA-TA--ATT
7273043 ATATTTGCATGATAATT
1 -TATTTGCATGATAATT
* * *
7273060 TATTTGCCTAATATTT
1 TATTTGCATGATAATT
* * *
7273076 TATTTACGTGATAAATA
1 TATTTGCATGAT-AATT
7273093 TATTTGCATGA
1 TATTTGCATGA
7273104 ATTTAATTTG
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
16 22 0.45
17 14 0.29
19 2 0.04
20 11 0.22
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.49
Consensus pattern (16 bp):
TATTTGCATGATAATT
Found at i:7274441 original size:13 final size:13
Alignment explanation
Indices: 7274420--7274475 Score: 69
Period size: 13 Copynumber: 4.3 Consensus size: 13
7274410 GATCGCAAGG
* *
7274420 TTTTCTTTTTTCA
1 TTTTATTTTTTAA
7274433 TTTTA-TTTTTAA
1 TTTTATTTTTTAA
7274445 TTTTATTTTTTAA
1 TTTTATTTTTTAA
*
7274458 TTTTATTTATTTTA
1 TTTTATTT-TTTAA
7274472 TTTT
1 TTTT
7274476 TCCTAGCTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.29
13 19 0.50
14 8 0.21
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:7274509 original size:23 final size:23
Alignment explanation
Indices: 7274445--7274514 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
7274435 TTATTTTTAA
* *
7274445 TTTTATTTTT-TAATTTTATTTA
1 TTTTATTTTTCTAGTTTTATTTT
*
7274467 TTTTATTTTTCCTAG-CTTATTTT
1 TTTTATTTTT-CTAGTTTTATTTT
7274490 TTTTATTTTTCTAGTTTTATTTT
1 TTTTATTTTTCTAGTTTTATTTT
7274513 TT
1 TT
7274515 AGAAATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
22 14 0.34
23 25 0.61
24 2 0.05
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (23 bp):
TTTTATTTTTCTAGTTTTATTTT
Found at i:7274512 original size:22 final size:22
Alignment explanation
Indices: 7274445--7274514 Score: 81
Period size: 22 Copynumber: 3.1 Consensus size: 22
7274435 TTATTTTTAA
*
7274445 TTTTATTTTT-TAATTTTATTT
1 TTTTATTTTTCTAGTTTTATTT
*
7274466 ATTTTATTTTTCCTAG-CTTATTTT
1 -TTTTATTTTT-CTAGTTTTA-TTT
7274490 TTTTATTTTTCTAGTTTTATTT
1 TTTTATTTTTCTAGTTTTATTT
7274512 TTT
1 TTT
7274515 AGAAATTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 20 0.49
23 16 0.39
24 5 0.12
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (22 bp):
TTTTATTTTTCTAGTTTTATTT
Found at i:7278523 original size:11 final size:12
Alignment explanation
Indices: 7278495--7278528 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
7278485 TATTTTAATT
7278495 TTTTTTAGTTTAA
1 TTTTTTA-TTTAA
7278508 TTTTTTATTTAA
1 TTTTTTATTTAA
7278520 -TTTTTATTT
1 TTTTTTATTT
7278529 TTTAGTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 5 0.24
13 7 0.33
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTTATTTAA
Found at i:7279199 original size:20 final size:20
Alignment explanation
Indices: 7279146--7279201 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
7279136 AATTTGTATG
* *
7279146 ATTATTAATTTATCTACATG
1 ATTATTAATTTATTTACATA
*
7279166 ATTATTAATTTATTTGCATA
1 ATTATTAATTTATTTACATA
*
7279186 ATTATCAATTTATTTA
1 ATTATTAATTTATTTA
7279202 TTTGTGTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (20 bp):
ATTATTAATTTATTTACATA
Found at i:7279252 original size:55 final size:56
Alignment explanation
Indices: 7279175--7279388 Score: 181
Period size: 55 Copynumber: 3.9 Consensus size: 56
7279165 GATTATTAAT
* * ** *
7279175 TTATTTGCATAATTATCA-ATTTATTTATTTGTGTGA-TTGCATAATTTATATATT-C
1 TTATTTGCATGATTAT-ATATTTAATTACATGT-TGATTTCCATAATTTATATATTAC
* * * *
7279230 TTATTTACATGATTATATATTTAATTGCATGTTTATTTCCATGATTTATATATTAC
1 TTATTTGCATGATTATATATTTAATTACATGTTGATTTCCATAATTTATATATTAC
* * * * ** *
7279286 -TATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGGTTTGTATATT--
1 TTATTTGCATGATTATATATTTAATTACATGTTGATTTCCATAATTTATATATTAC
* * * *
7279339 TTATTTGCATGATTATATATTCAATTGCATGTT-ATTTACATGATTTATAT
1 TTATTTGCATGATTATATATTTAATTACATGTTGATTTCCATAATTTATAT
7279389 TGTTAATTGC
Statistics
Matches: 136, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 14 0.10
54 33 0.24
55 88 0.65
56 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (56 bp):
TTATTTGCATGATTATATATTTAATTACATGTTGATTTCCATAATTTATATATTAC
Found at i:7279293 original size:35 final size:32
Alignment explanation
Indices: 7279230--7279300 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 32
7279220 TTATATATTC
*
7279230 TTATTTACATGATTATATATTTAATTGCATGT
1 TTATTTACATGATTATATATTTAATTGCATGA
* *
7279262 TTATTTCCATGATTTATATATTACTATTTGCATGA
1 TTATTTACATGA-TTATATATT--TAATTGCATGA
7279297 TTAT
1 TTAT
7279301 ATATTTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 11 0.33
33 9 0.27
35 13 0.39
ACGTcount: A:0.30, C:0.08, G:0.08, T:0.54
Consensus pattern (32 bp):
TTATTTACATGATTATATATTTAATTGCATGA
Found at i:7279303 original size:22 final size:23
Alignment explanation
Indices: 7279263--7279305 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7279253 ATTGCATGTT
7279263 TATTTCCATGATTTATATATTAC
1 TATTTCCATGATTTATATATTAC
*
7279286 TATTTGCATGA-TTATATATT
1 TATTTCCATGATTTATATATT
7279306 TAATTGCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.53
Consensus pattern (23 bp):
TATTTCCATGATTTATATATTAC
Found at i:7279357 original size:21 final size:22
Alignment explanation
Indices: 7279316--7279359 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7279306 TAATTGCATA
* *
7279316 TTTATTTGCATGGTTTGTATAT
1 TTTATTTGCATGGATTATATAT
7279338 TTTATTTGCAT-GATTATATAT
1 TTTATTTGCATGGATTATATAT
7279359 T
1 T
7279360 CAATTGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.23, C:0.05, G:0.14, T:0.59
Consensus pattern (22 bp):
TTTATTTGCATGGATTATATAT
Found at i:7279397 original size:32 final size:32
Alignment explanation
Indices: 7279339--7279407 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
7279329 TTTGTATATT
*
7279339 TTATTTGCATGATTATATATTCAATTGCATG-
1 TTATTTACATGATTATATATTCAATTGCATGA
*
7279370 TTATTTACATGATT-TATATTGTTAATTGCATGA
1 TTATTTACATGATTATATA-T-TCAATTGCATGA
7279403 TTATT
1 TTATT
7279408 AATATATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 4 0.12
31 14 0.42
32 10 0.30
33 5 0.15
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (32 bp):
TTATTTACATGATTATATATTCAATTGCATGA
Found at i:7279495 original size:24 final size:23
Alignment explanation
Indices: 7279468--7279523 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
7279458 TTTCATGATT
**
7279468 TTATATTTATTGCATGATATGCTA
1 TTATATTTATTGCATGAT-TAATA
*
7279492 TTATATGTTATTGTATGATTAATA
1 TTATAT-TTATTGCATGATTAATA
7279516 TTATATTT
1 TTATATTT
7279524 GAATAACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 15 0.54
25 11 0.39
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (23 bp):
TTATATTTATTGCATGATTAATA
Found at i:7279711 original size:20 final size:20
Alignment explanation
Indices: 7279639--7279713 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 20
7279629 ATGAATGGTT
* *
7279639 ATTAATATATTTGTATGGTA
1 ATTAATATATTTGCATGATA
* * * * *
7279659 TTTTATATATTTACATTATT
1 ATTAATATATTTGCATGATA
*
7279679 GTT-AT-TA-TTGCATGATA
1 ATTAATATATTTGCATGATA
7279696 ATTAATATATTTGCATGA
1 ATTAATATATTTGCATGA
7279714 CATTCTTACA
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
17 9 0.22
18 4 0.10
19 4 0.10
20 23 0.57
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.52
Consensus pattern (20 bp):
ATTAATATATTTGCATGATA
Found at i:7282959 original size:18 final size:18
Alignment explanation
Indices: 7282940--7282974 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7282930 ATGAACCCTA
7282940 AAAAC-TTTACAAATCTT
1 AAAACTTTTACAAATCTT
*
7282957 AAACCTTTTACAAATCTT
1 AAAACTTTTACAAATCTT
7282975 GAATCTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAACTTTTACAAATCTT
Found at i:7283039 original size:23 final size:23
Alignment explanation
Indices: 7282999--7283042 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7282989 GCATTAACTA
*
7282999 CATTCAATAAATTTATTGCATTG
1 CATTCAATAAATTCATTGCATTG
* *
7283022 CATTCACTACATTCATTGCAT
1 CATTCAATAAATTCATTGCAT
7283043 GCTTAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (23 bp):
CATTCAATAAATTCATTGCATTG
Found at i:7283466 original size:39 final size:38
Alignment explanation
Indices: 7283376--7283542 Score: 154
Period size: 39 Copynumber: 4.3 Consensus size: 38
7283366 GGCATGATTT
* * * *
7283376 AAAGTTGAAGCCTCGATGGAAGAGTTCTTTATTTTTCC
1 AAAGTTGAAGCCTCGGTGGAGGAGTACTTTATTTTTCA
* * *
7283414 AAAGTTTAAGCCTCGGTGGTGGAGTACTTTATTTGTTAA
1 AAAGTTGAAGCCTCGGTGGAGGAGTACTTTATTT-TTCA
* * * * * *
7283453 AAAGTTGAAGCCTCAGTGGAAGACTATTTTGTTTTTCC
1 AAAGTTGAAGCCTCGGTGGAGGAGTACTTTATTTTTCA
* * * * *
7283491 AAAGTTGAAGACTTTGGTAGAGGAATTCTTTATTTTTCA
1 AAAGTTGAAG-CCTCGGTGGAGGAGTACTTTATTTTTCA
7283530 AAAGTTGAAGCCT
1 AAAGTTGAAGCCT
7283543 TAGTGGAGTA
Statistics
Matches: 100, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
38 43 0.43
39 57 0.57
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (38 bp):
AAAGTTGAAGCCTCGGTGGAGGAGTACTTTATTTTTCA
Found at i:7283473 original size:77 final size:77
Alignment explanation
Indices: 7283376--7283562 Score: 206
Period size: 77 Copynumber: 2.5 Consensus size: 77
7283366 GGCATGATTT
* * * * *
7283376 AAAGTTGAAGCCTC-GATGGAAGAGT-TCTTTATTTTTCCAAAGTTTAAG-CCTCGGTGGTGGAG
1 AAAGTTGAAGCCTCAG-TGGAAGACTAT-TTTATTTTTCCAAAGTTGAAGACCTCGGTAGAGGAA
7283438 TACTTTATTTGTTAA
64 TACTTTATTT-TTAA
* * * *
7283453 AAAGTTGAAGCCTCAGTGGAAGACTATTTTGTTTTTCCAAAGTTGAAGACTTTGGTAGAGGAATT
1 AAAGTTGAAGCCTCAGTGGAAGACTATTTTATTTTTCCAAAGTTGAAGACCTCGGTAGAGGAATA
*
7283518 CTTTATTTTTCA
66 CTTTATTTTTAA
*
7283530 AAAGTTGAAGCCTTAGTGG-AG--TATTTTATTTTT
1 AAAGTTGAAGCCTCAGTGGAAGACTATTTTATTTTT
7283563 AAAAAGTTTC
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
74 11 0.12
76 2 0.02
77 62 0.65
78 20 0.21
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (77 bp):
AAAGTTGAAGCCTCAGTGGAAGACTATTTTATTTTTCCAAAGTTGAAGACCTCGGTAGAGGAATA
CTTTATTTTTAA
Found at i:7283671 original size:44 final size:43
Alignment explanation
Indices: 7283547--7283777 Score: 209
Period size: 43 Copynumber: 5.3 Consensus size: 43
7283537 AAGCCTTAGT
* *** *
7283547 GGAGTATTTTATTTTT-AAAAAGTTTCAAAATCTCAGTTGTAGA
1 GGAGCATTTTATTTTTCAAAAAGTTTCAATGCCTCAGTTGT-GG
* * * *
7283590 GAAGCATTTTATTTTTC-GAAAGTTTCAATGTCTCAGTTGTGAT
1 GGAGCATTTTATTTTTCAAAAAGTTTCAATGCCTCAGTTGTG-G
* *
7283633 GGAGCATTTTATTTTTCAAAAAGTTTCAAAGCCTCAGTTATGG
1 GGAGCATTTTATTTTTCAAAAAGTTTCAATGCCTCAGTTGTGG
* * *
7283676 GAGAGCATTTTATTTTCTAAAAACAATTT-AATGCCTCAATTGTGG
1 G-GAGCATTTTATTTT-TCAAAA-AGTTTCAATGCCTCAGTTGTGG
* * * *
7283721 GGGGCATTTTATTTTTC-AAAAGTTTTAATGCCTTAGTTATGGG
1 GGAGCATTTTATTTTTCAAAAAGTTTCAATGCCTCAGTTGT-GG
*
7283764 GGAGCATTTCATTT
1 GGAGCATTTTATTT
7283778 AAAGTTTTAA
Statistics
Matches: 155, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
41 4 0.03
42 15 0.10
43 66 0.43
44 47 0.30
45 19 0.12
46 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (43 bp):
GGAGCATTTTATTTTTCAAAAAGTTTCAATGCCTCAGTTGTGG
Found at i:7283742 original size:87 final size:86
Alignment explanation
Indices: 7283547--7283777 Score: 234
Period size: 87 Copynumber: 2.7 Consensus size: 86
7283537 AAGCCTTAGT
* * ** * * **
7283547 GGAGTATTTTATTTTTAAAAAGTTTCAAAATCTCAGTTGT-AGAGAAGCATTTTATTTTTCGAAA
1 GGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGAG-AGCATTTTATTTTTAAAAA
* * * *
7283611 GTTTCAATGTCTCAGTTGTGAT
65 ATTTCAATGCCTCAATTGTGAG
7283633 GGAGCATTTTATTTTTCAAAAAGTTTCAAAGCCTCAGTTATGGGAGAGCATTTTATTTTCTAAAA
1 GGAGCATTTTATTTTTC-AAAAGTTTCAAAGCCTCAGTTATGGGAGAGCATTTTATTTT-T-AAA
7283698 ACAATTT-AATGCCTCAATTGTG-G
63 A-AATTTCAATGCCTCAATTGTGAG
* * * * * *
7283721 GGGGCATTTTATTTTTCAAAAGTTTTAATGCCTTAGTTATGGGGGAGCATTTCATTT
1 GGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGAGAGCATTTTATTT
7283778 AAAGTTTTAA
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
86 15 0.12
87 68 0.56
88 20 0.16
89 15 0.12
90 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (86 bp):
GGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGAGAGCATTTTATTTTTAAAAAA
TTTCAATGCCTCAATTGTGAG
Found at i:7284705 original size:16 final size:16
Alignment explanation
Indices: 7284686--7284743 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
7284676 ACTAATATTA
7284686 TATTTGCATAATAATT
1 TATTTGCATAATAATT
* *
7284702 TATTTGCCTAATATTT
1 TATTTGCATAATAATT
* * *
7284718 TATTTGCTTGATTAATA
1 TATTTGCAT-AATAATT
7284735 TATTTGCAT
1 TATTTGCAT
7284744 GAATTTAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
16 22 0.65
17 12 0.35
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (16 bp):
TATTTGCATAATAATT
Found at i:7284771 original size:32 final size:33
Alignment explanation
Indices: 7284697--7284759 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
7284687 ATTTGCATAA
* *
7284697 TAATTTATTTGCCTAATATTTTATTTGCTTGAT
1 TAATTTATTTGCATAATATTTAATTTGCTTGAT
* *
7284730 TAATATATTTGCATGA-ATTTAATTTGCTTG
1 TAATTTATTTGCATAATATTTAATTTGCTTG
7284760 CATGATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (33 bp):
TAATTTATTTGCATAATATTTAATTTGCTTGAT
Found at i:7284777 original size:17 final size:18
Alignment explanation
Indices: 7284716--7284783 Score: 59
Period size: 17 Copynumber: 3.8 Consensus size: 18
7284706 TGCCTAATAT
* *
7284716 TTTATTTGCTTGA-TTAA
1 TTTAATTGCATGATTTAA
* *
7284733 TATATTTGCATGAATTTAA
1 TTTAATTGCATG-ATTTAA
**
7284752 TTTGCTTGCATGATTT-A
1 TTTAATTGCATGATTTAA
7284769 TTTAATTGCATGATT
1 TTTAATTGCATGATT
7284784 ATTAATATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
17 24 0.57
18 5 0.12
19 13 0.31
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.53
Consensus pattern (18 bp):
TTTAATTGCATGATTTAA
Found at i:7288483 original size:18 final size:18
Alignment explanation
Indices: 7288463--7288496 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7288453 ATCAAATCAA
*
7288463 AAAAT-AAAAATAAAAAT
1 AAAATGAAAAAGAAAAAT
7288480 AAAATGAAAAAGAAAAA
1 AAAATGAAAAAGAAAAA
7288497 ATCTACGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (18 bp):
AAAATGAAAAAGAAAAAT
Found at i:7288489 original size:25 final size:25
Alignment explanation
Indices: 7288451--7288498 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7288441 AAATCAAATC
*
7288451 AAATCAAATCAAAAA-ATAAAAATAA
1 AAATAAAATCAAAAAGA-AAAAATAA
*
7288476 AAATAAAATGAAAAAGAAAAAAT
1 AAATAAAATCAAAAAGAAAAAAT
7288499 CTACGATCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (25 bp):
AAATAAAATCAAAAAGAAAAAATAA
Found at i:7288906 original size:30 final size:30
Alignment explanation
Indices: 7288870--7288926 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7288860 AAAGTTCTTC
*
7288870 AAAAAACCCAGAAAAACCCAAAAAATTTTG
1 AAAAAACACAGAAAAACCCAAAAAATTTTG
* *
7288900 AAAAAACATAGAAAAATCCAAAAAATT
1 AAAAAACACAGAAAAACCCAAAAAATT
7288927 CTCAGACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.65, C:0.16, G:0.05, T:0.14
Consensus pattern (30 bp):
AAAAAACACAGAAAAACCCAAAAAATTTTG
Found at i:7289341 original size:14 final size:13
Alignment explanation
Indices: 7289322--7289381 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 13
7289312 AACAAAAAGG
7289322 AAAAGAAAAAACA
1 AAAAGAAAAAACA
*
7289335 AAGAAG-AAAAA-G
1 AA-AAGAAAAAACA
7289347 AAAAGAAAAAACA
1 AAAAGAAAAAACA
*
7289360 AAAA-CAAAAACA
1 AAAAGAAAAAACA
*
7289372 AAAATAAAAA
1 AAAAGAAAAA
7289382 TATAATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 3 0.08
12 18 0.46
13 15 0.38
14 3 0.08
ACGTcount: A:0.83, C:0.07, G:0.08, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAACA
Found at i:7289347 original size:20 final size:19
Alignment explanation
Indices: 7289312--7289381 Score: 72
Period size: 18 Copynumber: 3.7 Consensus size: 19
7289302 TGCAAATTTG
*
7289312 AACAAAAAGGAAAAGAAAA
1 AACAAAAAGAAAAAGAAAA
7289331 AACAAAGAAGAAAAAGAAAA
1 AACAAA-AAGAAAAAGAAAA
* * *
7289351 GA-AAAAACAAAAA-CAAA
1 AACAAAAAGAAAAAGAAAA
*
7289368 AACAAAAATAAAAA
1 AACAAAAAGAAAAA
7289382 TATAATAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.09
18 17 0.40
19 9 0.21
20 13 0.30
ACGTcount: A:0.81, C:0.07, G:0.10, T:0.01
Consensus pattern (19 bp):
AACAAAAAGAAAAAGAAAA
Found at i:7289369 original size:7 final size:6
Alignment explanation
Indices: 7289328--7289381 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
7289318 AAGGAAAAGA
* * *
7289328 AAAAAC AAAGAAG AAAAAG AAAAGA- AAAAAC AAAAAC AAAAAC AAAAAT
1 AAAAAC AAA-AAC AAAAAC AAAA-AC AAAAAC AAAAAC AAAAAC AAAAAC
7289377 AAAAA
1 AAAAA
7289382 TATAATAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 1 0.02
6 36 0.84
7 6 0.14
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:7289381 original size:25 final size:25
Alignment explanation
Indices: 7289311--7289374 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
7289301 GTGCAAATTT
7289311 GAACAAAAAGGAAAAGAAAAAACAAA
1 GAACAAAAA-GAAAAGAAAAAACAAA
*
7289337 GAAGAAAAAGAAAAGAAAAAACAAA
1 GAACAAAAAGAAAAGAAAAAACAAA
*
7289362 -AACAAAAACAAAA
1 GAACAAAAAGAAAA
7289375 ATAAAAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 11 0.31
25 16 0.46
26 8 0.23
ACGTcount: A:0.80, C:0.08, G:0.12, T:0.00
Consensus pattern (25 bp):
GAACAAAAAGAAAAGAAAAAACAAA
Found at i:7289394 original size:17 final size:17
Alignment explanation
Indices: 7289374--7289406 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7289364 CAAAAACAAA
7289374 AATAAAAATATAATAAT
1 AATAAAAATATAATAAT
*
7289391 AATAATAATATAATAA
1 AATAAAAATATAATAA
7289407 AAAAAGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAAAAATATAATAAT
Found at i:7289453 original size:3 final size:3
Alignment explanation
Indices: 7289445--7289498 Score: 74
Period size: 3 Copynumber: 18.3 Consensus size: 3
7289435 AAAAGGAAAG
* * *
7289445 TAA TAA TAA TAA TAA TAC TAA TAA TAA TAA TAA T-A TAA CAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7289492 TAA TAA T
1 TAA TAA T
7289499 TTATAAAAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7289678 original size:26 final size:26
Alignment explanation
Indices: 7289581--7289724 Score: 92
Period size: 26 Copynumber: 5.5 Consensus size: 26
7289571 CGTCGAGACG
* * * * *
7289581 TCAACGGGCTTAATCGGGCCTAGACG
1 TCAATGGGCCTAATCGAGCCTGGACA
* * *
7289607 TTAATGGGCCTAATCGAGCCCGAACA
1 TCAATGGGCCTAATCGAGCCTGGACA
* * * **
7289633 TCAACGGACCCAATTAAGCCTGGACA
1 TCAATGGGCCTAATCGAGCCTGGACA
*
7289659 TCAATGGGCCTAATCGAGCCTGGACG
1 TCAATGGGCCTAATCGAGCCTGGACA
* * * *
7289685 TCAATAGG-CTCAATTGGGCTTGGACA
1 TCAATGGGCCT-AATCGAGCCTGGACA
* *
7289711 TCAATAGGCTTAAT
1 TCAATGGGCCTAAT
7289725 AGGACTCGAA
Statistics
Matches: 88, Mismatches: 28, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
25 2 0.02
26 85 0.97
27 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (26 bp):
TCAATGGGCCTAATCGAGCCTGGACA
Found at i:7289737 original size:26 final size:26
Alignment explanation
Indices: 7289685--7289737 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7289675 AGCCTGGACG
* * * *
7289685 TCAATAGGCTCAATTGGGCTTGGACA
1 TCAATAGGCTCAATAGGACTCGAACA
*
7289711 TCAATAGGCTTAATAGGACTCGAACA
1 TCAATAGGCTCAATAGGACTCGAACA
7289737 T
1 T
7289738 AAATGGGTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
TCAATAGGCTCAATAGGACTCGAACA
Found at i:7290153 original size:117 final size:115
Alignment explanation
Indices: 7289952--7290307 Score: 354
Period size: 117 Copynumber: 3.1 Consensus size: 115
7289942 TTAAGATCGT
* * * * *
7289952 AAATAAATGACTGGACTAATGTCATGAGTCTGACAATGATTTGACTTCAGTCAAGATCGAATGAC
1 AAAT-AATGACCGGACTAATGTCGTGAGTCTGACGATGATCTGACTTCAGTCAAGATCAAATGAC
* * * * * *
7290017 TAGGATGATGCC-CTGAGTCACAATAAAGCAATCAAGATCGAGTCGATGTCAA
65 TAGGATGATACCGC--AGTCAAAATAAAGCAACCAAGACCAAGTCGAGGTCAA
* * * * **
7290069 AAATAATTGACCGGATTGATGTCGTGAGTCTAACGATGATCTGACTTTAGTTGAGATCAAATGAC
1 AAATAA-TGACCGGACTAATGTCGTGAGTCTGACGATGATCTGACTTCAGTCAAGATCAAATGAC
* * **
7290134 TAGGATGATACCGCAAGTCAAAATAAAGCGACCAGGACCAAGTCGAGGTTGA
65 TAGGATGATACCGC-AGTCAAAATAAAGCAACCAAGACCAAGTCGAGGTCAA
* * * * *
7290186 AAATGAATGATCGGCCTAATGTCGTGAGTTTGACGATGATCTGACCTGAGTCAAGATCAAATGAC
1 AAAT-AATGACCGGACTAATGTCGTGAGTCTGACGATGATCTGACTTCAGTCAAGATCAAATGAC
* * * * * * *
7290251 TGGGACGATACCGCAGTCAAAATAAAACGACCAAGACCAAGTTGAGATCGA
65 TAGGATGATACCGCAGTCAAAATAAAGCAACCAAGACCAAGTCGAGGTCAA
7290302 AAATAA
1 AAATAA
7290308 ATAATCATGA
Statistics
Matches: 197, Mismatches: 39, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
115 2 0.01
116 38 0.19
117 154 0.78
118 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (115 bp):
AAATAATGACCGGACTAATGTCGTGAGTCTGACGATGATCTGACTTCAGTCAAGATCAAATGACT
AGGATGATACCGCAGTCAAAATAAAGCAACCAAGACCAAGTCGAGGTCAA
Found at i:7301759 original size:5 final size:5
Alignment explanation
Indices: 7301751--7301784 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
7301741 AAATGGGTTG
7301751 AAAAT AAAAT AAAAT AAAAT AAAA- AAAAT GAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAA
7301785 AGGGAAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 19 0.70
6 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:7302652 original size:3 final size:3
Alignment explanation
Indices: 7302644--7302689 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
7302634 AAATAGAAAT
7302644 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7302690 AAGAAAAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7302739 original size:3 final size:3
Alignment explanation
Indices: 7302731--7302779 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
7302721 AAAAGAAAGT
* * *
7302731 ATA ATA ATA ATA ATA ATA CTA ATA ATA AT- ATA ACA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7302778 AT
1 AT
7302780 TTATAAAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7302901 original size:26 final size:26
Alignment explanation
Indices: 7302872--7302947 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
7302862 TCAACTAGCT
*
7302872 TAATTGGGCCTAAACGTCAATGGGCC
1 TAATTGGGCCTGAACGTCAATGGGCC
* ** * * *
7302898 TAATCGAACCCGAACGTCAAAGAGCC
1 TAATTGGGCCTGAACGTCAATGGGCC
* *
7302924 CAATTGGGCCTGAACATCAATGGG
1 TAATTGGGCCTGAACGTCAATGGG
7302948 TTTAATTAGG
Statistics
Matches: 35, Mismatches: 15, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (26 bp):
TAATTGGGCCTGAACGTCAATGGGCC
Found at i:7303842 original size:13 final size:13
Alignment explanation
Indices: 7303799--7303854 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
7303789 TTTATTTTTA
7303799 TAAATAT-A-TAT
1 TAAATATAATTAT
7303810 TAAAT-TAATTAT
1 TAAATATAATTAT
7303822 TAAATATAATT-T
1 TAAATATAATTAT
*
7303834 TAAATTATATTATAT
1 TAAA-TATAAT-TAT
7303849 TAAATA
1 TAAATA
7303855 ATATTTTTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.16
12 13 0.34
13 10 0.26
14 3 0.08
15 5 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATATAATTAT
Found at i:7303860 original size:27 final size:23
Alignment explanation
Indices: 7303799--7303861 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 23
7303789 TTTATTTTTA
*
7303799 TAAATATATATTAAATTAATTAT
1 TAAATATATTTTAAATTAATTAT
7303822 TAAATATAATTTTAAATTATATTATAT
1 TAAATAT-ATTTTAAATTA-A-T-TAT
7303849 TAAATAATATTTT
1 TAAAT-ATATTTT
7303862 TTGTTTAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
23 7 0.21
24 10 0.29
25 1 0.03
26 1 0.03
27 13 0.38
28 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAATATATTTTAAATTAATTAT
Found at i:7303875 original size:22 final size:22
Alignment explanation
Indices: 7303849--7303890 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7303839 TATATTATAT
*
7303849 TAAATAATATTTTTTGTTTAAA
1 TAAATAATATTTTTTATTTAAA
**
7303871 TAAATTTTATTTTTTATTTA
1 TAAATAATATTTTTTATTTA
7303891 TTTTATTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TAAATAATATTTTTTATTTAAA
Found at i:7303886 original size:18 final size:18
Alignment explanation
Indices: 7303834--7303886 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
7303824 AATATAATTT
* *
7303834 TAAATTATATTATATTAAA
1 TAAATTTTATT-TTTTAAA
*
7303853 TAATATTTT-TTGTTTAAA
1 TAA-ATTTTATTTTTTAAA
7303871 TAAATTTTATTTTTTA
1 TAAATTTTATTTTTTA
7303887 TTTATTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 5 0.18
18 14 0.50
19 5 0.18
20 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
TAAATTTTATTTTTTAAA
Found at i:7305135 original size:2 final size:2
Alignment explanation
Indices: 7305124--7305158 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7305114 AATGTCAACT
7305124 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7305159 ATTAACAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7308585 original size:21 final size:21
Alignment explanation
Indices: 7308559--7308598 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7308549 CTTTTATATT
7308559 AAAACTTAATCAATTAAGTTG
1 AAAACTTAATCAATTAAGTTG
7308580 AAAACTTAATCAATTAAGT
1 AAAACTTAATCAATTAAGT
7308599 CTCAGCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (21 bp):
AAAACTTAATCAATTAAGTTG
Found at i:7312710 original size:16 final size:16
Alignment explanation
Indices: 7312686--7312716 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7312676 CCATTTATGT
*
7312686 CTTTTCTTTTCTTTTC
1 CTTTCCTTTTCTTTTC
7312702 CTTTCCTTTTCTTTT
1 CTTTCCTTTTCTTTT
7312717 GTGGGAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
CTTTCCTTTTCTTTTC
Found at i:7313414 original size:25 final size:24
Alignment explanation
Indices: 7313386--7313433 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7313376 TGAAAAACTT
* *
7313386 GAATTAATTACATTTTTTTGAATTA
1 GAATTAAATACATTTGTTT-AATTA
7313411 GAATTAAATACATTTGTTTAATT
1 GAATTAAATACATTTGTTTAATT
7313434 GGTTATATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
GAATTAAATACATTTGTTTAATTA
Found at i:7313588 original size:2 final size:2
Alignment explanation
Indices: 7313583--7313637 Score: 60
Period size: 2 Copynumber: 27.0 Consensus size: 2
7313573 AAAAAAATTT
*
7313583 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA GA GTA GTA GTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA -TA -TA
7313627 TA TA TA T- TA TA
1 TA TA TA TA TA TA
7313638 GAGTAGTAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
1 2 0.04
2 39 0.81
3 7 0.15
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7313638 original size:22 final size:22
Alignment explanation
Indices: 7313583--7313646 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7313573 AAAAAAATTT
*
7313583 TATATATATATATATA-TA-TA-
1 TATATATAT-TATAGAGTAGTAG
7313603 TATATATATTATAGAGTAGTAG
1 TATATATATTATAGAGTAGTAG
7313625 TATATATATTATAGAGTAGTAG
1 TATATATATTATAGAGTAGTAG
7313647 CTCACTATGG
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 5 0.12
20 11 0.28
21 2 0.05
22 22 0.55
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (22 bp):
TATATATATTATAGAGTAGTAG
Found at i:7316747 original size:2 final size:2
Alignment explanation
Indices: 7316740--7316765 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7316730 ACAAATTCTA
7316740 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7316766 TATTTACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7324062 original size:2 final size:2
Alignment explanation
Indices: 7324055--7324104 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
7324045 GTCAATCTGT
7324055 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A G- GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
7324095 GG GA GA GA GA
1 GA GA GA GA GA
7324105 TTCATAGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7326839 original size:15 final size:14
Alignment explanation
Indices: 7326805--7326844 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
7326795 GGTTTTCTTT
* *
7326805 AAAAAAAAAAAAAG
1 AAAAGAAAAGAAAG
7326819 AAAAGAAAAGAAAG
1 AAAAGAAAAGAAAG
7326833 AAGAAGAAAAGA
1 AA-AAGAAAAGA
7326845 GAAACAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:7337838 original size:2 final size:2
Alignment explanation
Indices: 7337831--7337863 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7337821 CGAAGAAGCT
7337831 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7337864 TCATACAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7342641 original size:22 final size:22
Alignment explanation
Indices: 7342603--7342649 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
7342593 AGTTATGCTT
*
7342603 AATTATTAAAATTTTAA-ATATA
1 AATTATTAAAATATTAATA-ATA
7342625 AATTATTTAAAA-ATTAATAATA
1 AATTA-TTAAAATATTAATAATA
7342647 AAT
1 AAT
7342650 CATATATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTATTAAAATATTAATAATA
Found at i:7349529 original size:11 final size:11
Alignment explanation
Indices: 7349496--7349533 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
7349486 GTAGATTTAA
7349496 TAATTTGTATAT
1 TAATTTGTAT-T
7349508 TAATATT-TATT
1 TAAT-TTGTATT
7349519 TAATTTGTATT
1 TAATTTGTATT
7349530 TAAT
1 TAAT
7349534 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 13 0.54
12 7 0.29
13 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (11 bp):
TAATTTGTATT
Found at i:7349699 original size:2 final size:2
Alignment explanation
Indices: 7349692--7349729 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7349682 AACGGATCTA
7349692 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7349730 ACAACATACA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7349817 original size:22 final size:22
Alignment explanation
Indices: 7349774--7349851 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 22
7349764 TTATATGAAC
*
7349774 AATTCTTTTAAATAATACATAAAAT
1 AATTTTTTTAAA-AA-A-ATAAAAT
*
7349799 AATTTTTTTAAAAAAATAAGAT
1 AATTTTTTTAAAAAAATAAAAT
* *
7349821 AATATTTTTTAATTACAAATTAAAT
1 AAT-TTTTTTAA--AAAAATAAAAT
7349846 AATTTT
1 AATTTT
7349852 AATTTATTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
22 9 0.20
23 9 0.20
24 5 0.11
25 22 0.49
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (22 bp):
AATTTTTTTAAAAAAATAAAAT
Found at i:7349969 original size:21 final size:21
Alignment explanation
Indices: 7349944--7349995 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
7349934 TAAAATATGG
*
7349944 ATTTTATTTTTTTAATAAATA
1 ATTTTATTTTTTTAACAAATA
* * *
7349965 ATTTTAGTTGTTTACCAAATA
1 ATTTTATTTTTTTAACAAATA
*
7349986 ATCTTATTTT
1 ATTTTATTTT
7349996 AAAAATTATT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
ATTTTATTTTTTTAACAAATA
Found at i:7350555 original size:11 final size:11
Alignment explanation
Indices: 7350541--7350574 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7350531 TATTTTTTCT
7350541 TTTTTCACATA
1 TTTTTCACATA
7350552 -TTTTCACATA
1 TTTTTCACATA
*
7350562 TTTTTCATATA
1 TTTTTCACATA
7350573 TT
1 TT
7350575 GTATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTTCACATA
Found at i:7350642 original size:12 final size:12
Alignment explanation
Indices: 7350625--7350649 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7350615 TAATACTTCT
7350625 TTTATTATTTAA
1 TTTATTATTTAA
7350637 TTTATTATTTAA
1 TTTATTATTTAA
7350649 T
1 T
7350650 AATATATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTATTTAA
Found at i:7350685 original size:23 final size:22
Alignment explanation
Indices: 7350634--7350690 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
7350624 TTTTATTATT
* * *
7350634 TAATTTATTATTTAATAATATA
1 TAATTTATTTTTTAAAAAGATA
*
7350656 TATTTTATTTTTTAAAAAAGATA
1 TAATTTATTTTTT-AAAAAGATA
7350679 TAATTTATTTTT
1 TAATTTATTTTT
7350691 ATTTGATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TAATTTATTTTTTAAAAAGATA
Found at i:7350689 original size:22 final size:22
Alignment explanation
Indices: 7350634--7350691 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7350624 TTTTATTATT
* *
7350634 TAATTTATTATTT-AATAATATA
1 TAATTTATT-TTTAAAAAAGATA
*
7350656 TATTTTATTTTTTAAAAAAGATA
1 TAATTTA-TTTTTAAAAAAGATA
7350679 TAATTTATTTTTA
1 TAATTTATTTTTA
7350692 TTTGATATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TAATTTATTTTTAAAAAAGATA
Found at i:7352676 original size:28 final size:30
Alignment explanation
Indices: 7352608--7352676 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 30
7352598 AATGGTTTTT
7352608 AAATTATATTAAAATATTTAATATAATATTTA
1 AAATTATA--AAAATATTTAATATAATATTTA
7352640 AAATT-TAAAAAT-TTTAATATAATATTT-
1 AAATTATAAAAATATTTAATATAATATTTA
*
7352667 GAATTATAAA
1 AAATTATAAA
7352677 TTTATTAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
27 4 0.11
28 19 0.54
29 5 0.14
31 2 0.06
32 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (30 bp):
AAATTATAAAAATATTTAATATAATATTTA
Found at i:7352703 original size:15 final size:15
Alignment explanation
Indices: 7352685--7352723 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7352675 AATTTATTAA
* *
7352685 TTAATATATTTATTT
1 TTAATATAATTAATT
7352700 TTAATATAATTAATT
1 TTAATATAATTAATT
7352715 TTAA-ATAAT
1 TTAATATAAT
7352724 AATAAATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATATAATTAATT
Done.