Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 30 of 117
Found at i:7791163 original size:14 final size:13
Alignment explanation
Indices: 7791136--7791160 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7791126 CTAAAAATTT
7791136 AAAAATAATTTTA
1 AAAAATAATTTTA
7791149 AAAAATAATTTT
1 AAAAATAATTTT
7791161 TAATTTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAAATAATTTTA
Found at i:7791180 original size:26 final size:26
Alignment explanation
Indices: 7791151--7791229 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
7791141 TAATTTTAAA
*
7791151 AAATAATTTTTAATTTTTGAATTTTT
1 AAATAATTTATAATTTTTGAATTTTT
*
7791177 AAAT-ATTTACTAATATTTT-ATTTTTT
1 AAATAATTTA-TAAT-TTTTGAATTTTT
* **
7791203 AAAAAAAATAT-ATTTTTGAATTTTT
1 AAATAATTTATAATTTTTGAATTTTT
7791228 AA
1 AA
7791230 TAAAATCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
24 4 0.09
25 14 0.33
26 18 0.42
27 7 0.16
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (26 bp):
AAATAATTTATAATTTTTGAATTTTT
Found at i:7791243 original size:26 final size:25
Alignment explanation
Indices: 7791161--7791243 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 25
7791151 AAATAATTTT
** *
7791161 TAATTTTTGAATTTTTAAATATTTAC
1 TAATTTTTGAATTTTTAAA-AAATAA
*
7791187 TAATATTTT-ATTTTTTAAAAAA-AA
1 TAAT-TTTTGAATTTTTAAAAAATAA
*
7791211 TATATTTTTGAATTTTTAATAAAATCA
1 TA-ATTTTTGAATTTTTAA-AAAATAA
7791238 TAATTT
1 TAATTT
7791244 CTTAACAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 7 0.15
25 11 0.24
26 21 0.46
27 7 0.15
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TAATTTTTGAATTTTTAAAAAATAA
Found at i:7791444 original size:8 final size:8
Alignment explanation
Indices: 7791433--7791490 Score: 53
Period size: 8 Copynumber: 6.8 Consensus size: 8
7791423 CTTTTTCATT
7791433 ATTTTTAA
1 ATTTTTAA
*
7791441 ATTTTTAG
1 ATTTTTAA
7791449 ATTTTTAAA
1 ATTTTT-AA
7791458 ATATTTTAA
1 AT-TTTTAA
*
7791467 GACTTTTAA
1 -ATTTTTAA
*
7791476 TTTTTTAA
1 ATTTTTAA
7791484 TATTTTT
1 -ATTTTT
7791491 CTAAAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
8 19 0.47
9 16 0.40
10 5 0.12
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (8 bp):
ATTTTTAA
Found at i:7791462 original size:27 final size:26
Alignment explanation
Indices: 7791418--7791490 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
7791408 AAAATCATTT
* * * *
7791418 TTTTACTTTTTCATTATTTTTAA-AT
1 TTTTAATTTTTAAATATTTTTAAGAC
7791443 TTTTAGATTTTTAAA-ATATTTTAAGAC
1 TTTTA-ATTTTTAAATAT-TTTTAAGAC
*
7791470 TTTTAATTTTTTAATATTTTT
1 TTTTAATTTTTAAATATTTTT
7791491 CTAAAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 7 0.18
26 24 0.62
27 8 0.21
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (26 bp):
TTTTAATTTTTAAATATTTTTAAGAC
Found at i:7791490 original size:17 final size:17
Alignment explanation
Indices: 7791417--7791490 Score: 51
Period size: 17 Copynumber: 4.3 Consensus size: 17
7791407 AAAAATCATT
* * *
7791417 TTTTTACTTTTTCATTA
1 TTTTTAATTTTTTAATA
*
7791434 TTTTTAAATTTTTAGAT-
1 TTTTTAATTTTTTA-ATA
* * *
7791451 TTTTAAAATATTTTAAGA
1 TTTT-TAATTTTTTAATA
*
7791469 CTTTTAATTTTTTAATA
1 TTTTTAATTTTTTAATA
7791486 TTTTT
1 TTTTT
7791491 CTAAAAAAAA
Statistics
Matches: 41, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
17 30 0.73
18 11 0.27
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTTAATTTTTTAATA
Found at i:7792613 original size:30 final size:30
Alignment explanation
Indices: 7792578--7792652 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
7792568 TTATACAATC
* *
7792578 CAAATAAACTTTTAAATTTTAATTTATATT
1 CAAATAAACTTTTAAACTTTAATTCATATT
*
7792608 CAAATAAA-TCTTTAACCTTTAATTCATATT
1 CAAATAAACT-TTTAAACTTTAATTCATATT
* *
7792638 TAAATAAACTCTTAA
1 CAAATAAACTTTTAA
7792653 GATAAATCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
29 1 0.03
30 36 0.95
31 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (30 bp):
CAAATAAACTTTTAAACTTTAATTCATATT
Found at i:7803210 original size:29 final size:27
Alignment explanation
Indices: 7803157--7803210 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
7803147 AACCATAGTG
* *
7803157 AAAATTTCAATGTGGTACTTGAACTTC
1 AAAATTTCAATGTGGTACCTAAACTTC
7803184 AAAAGTTTCTAATGTGGTACCTAAACT
1 AAAA-TTTC-AATGTGGTACCTAAACT
7803211 ATGAATCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 4 0.17
29 15 0.65
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (27 bp):
AAAATTTCAATGTGGTACCTAAACTTC
Found at i:7807169 original size:23 final size:23
Alignment explanation
Indices: 7807139--7807183 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7807129 ACTTAACATA
* *
7807139 AACAAAATCACTATTCTCCAATC
1 AACAAAATCACCAGTCTCCAATC
7807162 AACAAAATCACCAGTCTCCAAT
1 AACAAAATCACCAGTCTCCAAT
7807184 ACTATGTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.22
Consensus pattern (23 bp):
AACAAAATCACCAGTCTCCAATC
Found at i:7815525 original size:14 final size:14
Alignment explanation
Indices: 7815487--7815513 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7815477 ATTATTGAAA
7815487 AAAAAAAAAAAAGC
1 AAAAAAAAAAAAGC
7815501 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
7815514 TGAACAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGC
Found at i:7817435 original size:23 final size:23
Alignment explanation
Indices: 7817409--7817458 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
7817399 TGCTATTTGT
* *
7817409 GAATTGATCTGGGTTTAAAGAGA
1 GAATTAATCTGAGTTTAAAGAGA
* *
7817432 GAATTAATTTGATTTTAAAGAGA
1 GAATTAATCTGAGTTTAAAGAGA
7817455 GAAT
1 GAAT
7817459 AAATTTTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.34
Consensus pattern (23 bp):
GAATTAATCTGAGTTTAAAGAGA
Found at i:7817793 original size:18 final size:18
Alignment explanation
Indices: 7817762--7817802 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7817752 ATAATAATTA
7817762 ATTT-TTTAAATATATAT
1 ATTTATTTAAATATATAT
*
7817779 ATTTATTTAAGTATATAT
1 ATTTATTTAAATATATAT
*
7817797 TTTTAT
1 ATTTAT
7817803 GTCACATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
ATTTATTTAAATATATAT
Found at i:7818693 original size:21 final size:22
Alignment explanation
Indices: 7818662--7818703 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7818652 TATTTTTAAT
7818662 TTATTACTTTTAATTTAAAAAA
1 TTATTACTTTTAATTTAAAAAA
**
7818684 TTATTA-TTTTTGTTTAAAAA
1 TTATTACTTTTAATTTAAAAA
7818704 TGAAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TTATTACTTTTAATTTAAAAAA
Found at i:7818694 original size:22 final size:21
Alignment explanation
Indices: 7818662--7818703 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
7818652 TATTTTTAAT
7818662 TTATTACTTTTAATTTAAAAAA
1 TTATTACTTTT-ATTTAAAAAA
* *
7818684 TTATTATTTTTGTTTAAAAA
1 TTATTACTTTTATTTAAAAA
7818704 TGAAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATTACTTTTATTTAAAAAA
Found at i:7822257 original size:21 final size:21
Alignment explanation
Indices: 7822231--7822273 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7822221 ACATGAAGAT
7822231 AGAATTGTATCTGCTAGTTAA
1 AGAATTGTATCTGCTAGTTAA
7822252 AGAATTGTATCTGCTAGTTAA
1 AGAATTGTATCTGCTAGTTAA
7822273 A
1 A
7822274 TTAACTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (21 bp):
AGAATTGTATCTGCTAGTTAA
Found at i:7827171 original size:13 final size:13
Alignment explanation
Indices: 7827153--7827194 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7827143 TTTTATGTCT
*
7827153 TTAATTAATACTA
1 TTAATTAATAATA
7827166 TTAATTAA-AATA
1 TTAATTAATAATA
7827178 TTAATATAATAAATA
1 TTAAT-TAAT-AATA
7827193 TT
1 TT
7827195 GACCAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 8 0.32
13 11 0.44
15 6 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAATTAATAATA
Found at i:7837007 original size:6 final size:6
Alignment explanation
Indices: 7836996--7837024 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7836986 GATAGTACAA
7836996 AAGGAG AAGGAG AAGGAG AAGGAG AAGGA
1 AAGGAG AAGGAG AAGGAG AAGGAG AAGGA
7837025 CAGACCTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
AAGGAG
Found at i:7842143 original size:21 final size:23
Alignment explanation
Indices: 7842098--7842156 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 23
7842088 AGTTATAAGT
* *
7842098 TATTAATTGATTATTTAATAATA
1 TATTAATTAATTATATAATAATA
7842121 TATTAATTAATTATAT-A-AATA
1 TATTAATTAATTATATAATAATA
* *
7842142 TAATATTTAATTATA
1 TATTAATTAATTATA
7842157 AATGTAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 17 0.53
22 1 0.03
23 14 0.44
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTAATTAATTATATAATAATA
Found at i:7843064 original size:13 final size:13
Alignment explanation
Indices: 7843036--7843080 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
7843026 TAAATTTCAA
*
7843036 TTGTTTA-TTGAG
1 TTGTTTATTTAAG
7843048 TTGTTTATTTAAG
1 TTGTTTATTTAAG
*
7843061 TTGTATATTTAA-
1 TTGTTTATTTAAG
7843073 TTGTTTAT
1 TTGTTTAT
7843081 ACTATTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 14 0.48
13 15 0.52
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (13 bp):
TTGTTTATTTAAG
Found at i:7845778 original size:16 final size:17
Alignment explanation
Indices: 7845740--7845780 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7845730 AACTGGTTCA
*
7845740 ATATAACATACTTCATT
1 ATATAACATACTCCATT
*
7845757 AGATAACATA-TCCATT
1 ATATAACATACTCCATT
7845773 ATATAACA
1 ATATAACA
7845781 CGTTTAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.34
Consensus pattern (17 bp):
ATATAACATACTCCATT
Found at i:7845854 original size:14 final size:14
Alignment explanation
Indices: 7845816--7845859 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7845806 ATTTATTGTA
*
7845816 TAACACATGTAATA-
1 TAACACATCTAA-AC
7845830 TAACACAATCTAAAC
1 TAACAC-ATCTAAAC
7845845 TAACACATCTAAAC
1 TAACACATCTAAAC
7845859 T
1 T
7845860 GTCTAATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.50, C:0.23, G:0.02, T:0.25
Consensus pattern (14 bp):
TAACACATCTAAAC
Found at i:7849587 original size:21 final size:19
Alignment explanation
Indices: 7849562--7849640 Score: 50
Period size: 21 Copynumber: 3.9 Consensus size: 19
7849552 AAAAAGATTC
7849562 TAAAATTTTTTTAAAAATTA
1 TAAAATTTTTTT-AAAATTA
* * * * *
7849582 TAAAAAAATATTTCATAATTC
1 T--AAAATTTTTTTAAAATTA
*
7849603 TAAAATTTTTTTAAAATTTTC
1 TAAAATTTTTTTAAAA--TTA
*
7849624 TAAATTTTTTTTAAAAT
1 TAAAATTTTTTTAAAAT
7849641 AACAAATTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
19 12 0.27
20 1 0.02
21 24 0.53
22 8 0.18
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TAAAATTTTTTTAAAATTA
Found at i:7849619 original size:11 final size:11
Alignment explanation
Indices: 7849603--7849640 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7849593 TTCATAATTC
7849603 TAAAATTTTTT
1 TAAAATTTTTT
*
7849614 TAAAA-TTTTC
1 TAAAATTTTTT
*
7849624 TAAATTTTTTT
1 TAAAATTTTTT
7849635 TAAAAT
1 TAAAAT
7849641 AACAAATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TAAAATTTTTT
Found at i:7849701 original size:20 final size:20
Alignment explanation
Indices: 7849678--7849788 Score: 73
Period size: 20 Copynumber: 5.5 Consensus size: 20
7849668 TATAATATTT
*
7849678 TTCAAAAACTATTTAAAAAA
1 TTCAAAAATTATTTAAAAAA
* * * *
7849698 TTCAAAATTTTTTTTAAAGA
1 TTCAAAAATTATTTAAAAAA
* *
7849718 TTCAAAAA-AATTTTAAAAA
1 TTCAAAAATTATTTAAAAAA
* * *
7849737 TT-AAAAAATATTCAAAATAT
1 TTCAAAAATTATTTAAAA-AA
* *
7849757 TTCTAAAATTTTTTAAAAAAA
1 TTCAAAAATTATTT-AAAAAA
7849778 TTCTAAAAATT
1 TTC-AAAAATT
7849789 CTAAAAATTT
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
18 5 0.07
19 16 0.24
20 25 0.37
21 11 0.16
22 10 0.15
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (20 bp):
TTCAAAAATTATTTAAAAAA
Found at i:7849733 original size:19 final size:18
Alignment explanation
Indices: 7849709--7849744 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7849699 TCAAAATTTT
*
7849709 TTTTAAAGATTCAAAAAAA
1 TTTTAAAAATT-AAAAAAA
7849728 TTTTAAAAATTAAAAAA
1 TTTTAAAAATTAAAAAA
7849745 TATTCAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
TTTTAAAAATTAAAAAAA
Found at i:7849794 original size:8 final size:9
Alignment explanation
Indices: 7849773--7849797 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7849763 AATTTTTTAA
7849773 AAAAATTCT
1 AAAAATTCT
7849782 AAAAATTCT
1 AAAAATTCT
7849791 AAAAATT
1 AAAAATT
7849798 TTCAGATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATTCT
Found at i:7849796 original size:31 final size:32
Alignment explanation
Indices: 7849737--7849799 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 32
7849727 ATTTTAAAAA
7849737 TTAAAAAATATTCAAAATATTTCTAAAATTTT
1 TTAAAAAATATTCAAAATATTTCTAAAATTTT
*
7849769 TTAAAAAA-ATTCTAAAA-A-TTCTAAAAATTT
1 TTAAAAAATATTC-AAAATATTTCTAAAATTTT
7849799 T
1 T
7849800 CAGATAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 12 0.41
31 5 0.17
32 12 0.41
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.41
Consensus pattern (32 bp):
TTAAAAAATATTCAAAATATTTCTAAAATTTT
Found at i:7849886 original size:22 final size:23
Alignment explanation
Indices: 7849861--7849912 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
7849851 TTAAAATCAA
7849861 TAAAAAGTATTTT-GAAAAAA-TC
1 TAAAAA-TATTTTAGAAAAAATTC
* *
7849883 TAAAAATTTTTTATAAAAAATTC
1 TAAAAATATTTTAGAAAAAATTC
7849906 TAAAAAT
1 TAAAAAT
7849913 TTGTAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 12 0.46
23 9 0.35
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (23 bp):
TAAAAATATTTTAGAAAAAATTC
Found at i:7850100 original size:20 final size:20
Alignment explanation
Indices: 7850053--7850101 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7850043 AAATTCTTGA
7850053 ATATTTTTAAATTTTTTTTT
1 ATATTTTTAAATTTTTTTTT
* *
7850073 ACAATTTTCAAA-TTTTTTTT
1 A-TATTTTTAAATTTTTTTTT
7850093 ATATTTTTA
1 ATATTTTTA
7850102 GCAAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.25
20 10 0.42
21 8 0.33
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTAAATTTTTTTTT
Found at i:7850238 original size:19 final size:21
Alignment explanation
Indices: 7850195--7850243 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
7850185 TAATTTTCAG
*
7850195 GTTTTTTGAATTTCTTGAAAT
1 GTTTTTTTAATTTCTTGAAAT
7850216 -TTTTTTTAATTT-TT-AAAT
1 GTTTTTTTAATTTCTTGAAAT
*
7850234 GTTTTATTAA
1 GTTTTTTTAA
7850244 AATTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
19 10 0.40
20 11 0.44
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (21 bp):
GTTTTTTTAATTTCTTGAAAT
Found at i:7850289 original size:9 final size:10
Alignment explanation
Indices: 7850266--7850398 Score: 76
Period size: 10 Copynumber: 13.4 Consensus size: 10
7850256 TTGATTTTGT
7850266 TTTTTTAAAA
1 TTTTTTAAAA
*
7850276 TTTTTTAGAA
1 TTTTTTAAAA
7850286 -TTTTT---A
1 TTTTTTAAAA
* *
7850292 TATTTGAAAA
1 TTTTTTAAAA
*
7850302 TTTTTTTAGAA
1 -TTTTTTAAAA
* * *
7850313 TTTGTTAGAT
1 TTTTTTAAAA
7850323 TTTTTTAAAA
1 TTTTTTAAAA
** *
7850333 CTTTGGTAGAA
1 -TTTTTTAAAA
*
7850344 TTTATTAAAA
1 TTTTTTAAAA
*
7850354 GTTTTTAAAA
1 TTTTTTAAAA
**
7850364 AATTTTAAGAA
1 TTTTTTAA-AA
7850375 TTTTTTAAAA
1 TTTTTTAAAA
*
7850385 TTTTTAAAAA
1 TTTTTTAAAA
7850395 TTTT
1 TTTT
7850399 AAAAATACTT
Statistics
Matches: 92, Mismatches: 24, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
6 1 0.01
7 3 0.03
9 5 0.05
10 61 0.66
11 22 0.24
ACGTcount: A:0.37, C:0.01, G:0.08, T:0.55
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:7850306 original size:27 final size:27
Alignment explanation
Indices: 7850272--7850324 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7850262 TTGTTTTTTT
*
7850272 AAAATTTTTTAGAATTT-TTATATTTG
1 AAAATTTTTTAGAATTTGTTAGATTTG
7850298 AAAATTTTTTTAGAATTTGTTAGATTT
1 AAAA-TTTTTTAGAATTTGTTAGATTT
7850325 TTTTAAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.17
27 13 0.54
28 7 0.29
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (27 bp):
AAAATTTTTTAGAATTTGTTAGATTTG
Found at i:7850359 original size:31 final size:29
Alignment explanation
Indices: 7850340--7850400 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 29
7850330 AAACTTTGGT
7850340 AGAATTTATTAAAAGTTTTTAAAAAATTTTA
1 AGAATTTATTAAAA-TTTTT-AAAAATTTTA
*
7850371 AGAATTTTTTAAAATTTTTAAAAATTTTA
1 AGAATTTATTAAAATTTTTAAAAATTTTA
7850400 A
1 A
7850401 AAATACTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 11 0.38
30 5 0.17
31 13 0.45
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (29 bp):
AGAATTTATTAAAATTTTTAAAAATTTTA
Found at i:7850399 original size:9 final size:9
Alignment explanation
Indices: 7850356--7850425 Score: 61
Period size: 9 Copynumber: 7.4 Consensus size: 9
7850346 TATTAAAAGT
7850356 TTTTAAAAAA
1 TTTT-AAAAA
*
7850366 TTTTAAGAATT
1 TTTTAA-AA-A
*
7850377 TTTTAAAAT
1 TTTTAAAAA
7850386 TTTTAAAAA
1 TTTTAAAAA
7850395 TTTTAAAAA
1 TTTTAAAAA
* *
7850404 TACTTAAGAA
1 T-TTTAAAAA
7850414 -TTTAAAAA
1 TTTTAAAAA
7850422 TTTT
1 TTTT
7850426 TCTTTTTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.12
9 24 0.48
10 14 0.28
11 6 0.12
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:7850403 original size:10 final size:10
Alignment explanation
Indices: 7850356--7850403 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
7850346 TATTAAAAGT
7850356 TTTTAAAAAA
1 TTTTAAAAAA
*
7850366 TTTT-AAGAA
1 TTTTAAAAAA
**
7850375 TTTTTTAAAA
1 TTTTAAAAAA
*
7850385 TTTTTAAAAA
1 TTTTAAAAAA
7850395 TTTTAAAAA
1 TTTTAAAAA
7850404 TACTTAAGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (10 bp):
TTTTAAAAAA
Found at i:7851965 original size:266 final size:266
Alignment explanation
Indices: 7851488--7851969 Score: 598
Period size: 264 Copynumber: 1.8 Consensus size: 266
7851478 ATCAATATGG
* * * * **
7851488 AAAAAAATTTTTGTTTATCAAATACTATATTTTTTTCATAAAAAATGTAGTTAAAAATATTTTAA
1 AAAAAAATTTTTATTTATCAAATACTATACTTTTTTCACAAAAAACGTAGTTAAAAATATCATAA
* * * *
7851553 ATATTCTATCATAAATATTATATCTATTATTACGTTTTTATATTAAGAAACAACATTCAAATTGA
66 ATATTCTATCATAAATATTATATCTATTACTACATTTTCATACTAAGAAACAACATTCAAATTGA
* * *
7851618 AAATATCAAATTTTTTTATTTTTTTTCAAATGATTAACTACGTTTTATATGTAAAAACATAGTGT
131 AAATATCAAATTTTATTATTTTTTTTCAAATGATTAACTACATTTTATATGTAAAAACAAAGTGT
*
7851683 TTATAAAAATTAAAAAAATTATGATTTATTAATGACTACGTTTTCATAACTAGAAACGTAGTTAT
196 TTACAAAAATTAAAAAAATTATGATTTATTAATGACTACGTTTTCATAACTAGAAACGTAGTTAT
7851748 TGATAT
261 TGATAT
* *
7851754 AAAAAAATTTTATATTTATCAAATA-T-TACTTTTTTGACAAAACAACGT-GTTAAAAGTATCAT
1 AAAAAAATTTT-TATTTATCAAATACTATACTTTTTTCACAAAA-AACGTAGTTAAAAATATCAT
* * * ** *
7851816 AAATATTTTATTATAAAT-TTATATTTATTACTACATTTTCATACTAAGAAACGTCATTCATATT
64 AAATATTCTATCATAAATATTATATCTATTACTACATTTTCATACTAAGAAACAACATTCAAATT
** * * *
7851880 GAAAATATTTAA-TTTATTATGTTATTATTTTAATTGATTAATTACATTTTATATGTAAAAATCA
129 GAAAATATCAAATTTTATTAT-TT-TT-TTTCAAATGATTAACTACATTTTATATGTAAAAA-CA
* *
7851944 AAGTGCTTT-CGAAAATAAAAAAAATT
190 AAGTG-TTTACAAAAATTAAAAAAATT
7851970 CAAAATCCTA
Statistics
Matches: 180, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
263 7 0.04
264 50 0.28
265 42 0.23
266 46 0.26
267 32 0.18
268 3 0.02
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (266 bp):
AAAAAAATTTTTATTTATCAAATACTATACTTTTTTCACAAAAAACGTAGTTAAAAATATCATAA
ATATTCTATCATAAATATTATATCTATTACTACATTTTCATACTAAGAAACAACATTCAAATTGA
AAATATCAAATTTTATTATTTTTTTTCAAATGATTAACTACATTTTATATGTAAAAACAAAGTGT
TTACAAAAATTAAAAAAATTATGATTTATTAATGACTACGTTTTCATAACTAGAAACGTAGTTAT
TGATAT
Found at i:7852843 original size:62 final size:63
Alignment explanation
Indices: 7852741--7852883 Score: 164
Period size: 62 Copynumber: 2.3 Consensus size: 63
7852731 AAAATCAATG
* * * *
7852741 CAATAA-TTGATTATTGTAAAAAAATTATAATGAGCAATTATTACATTTATTTTTAAAGAAACA
1 CAATAATTTGATT-TTTTAAAAAAATTACAATGAGCAATTATTACATTTATCTTTAAAAAAACA
* * ** * *
7852804 CAGT-ATTTGATTTTTTAAATAAATTACAATGATTAATTATTACGTTTATCTTTAAAAAAATA
1 CAATAATTTGATTTTTTAAAAAAATTACAATGAGCAATTATTACATTTATCTTTAAAAAAACA
*
7852866 CAATAATTTAATTTTTTA
1 CAATAATTTGATTTTTTA
7852884 CATATTTAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
62 45 0.68
63 21 0.32
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (63 bp):
CAATAATTTGATTTTTTAAAAAAATTACAATGAGCAATTATTACATTTATCTTTAAAAAAACA
Found at i:7853134 original size:104 final size:102
Alignment explanation
Indices: 7852958--7853155 Score: 252
Period size: 104 Copynumber: 1.9 Consensus size: 102
7852948 TTTTCAGCGT
* * * * *
7852958 ATTAATTGACTTATCATTAATGGCTTATAGTGTCATTAATTGGCTTATCATTCATAATTATTGCG
1 ATTAATTGACTTATCATTAATGGCTTATAGTGTAATTAATTGACTTATCATTCACAATTACTACG
7853023 TTCCTTTGAATAGTAACACAATAATTGGCTTCTTAGCAC
66 TTCCTTTGAATA--AACACAATAATTGGCTTCTTAGCAC
* * ** * *
7853062 ATTAATTGACTTATTATTAATGGTTTATAGTGTAATTAATTGACTTATCATTGGCAATTGCTATG
1 ATTAATTGACTTATCATTAATGGCTTATAGTGTAATTAATTGACTTATCATTCACAATTACTACG
* * *
7853127 TTTCTTTGAATAAACGCAGTAATTGGCTT
66 TTCCTTTGAATAAACACAATAATTGGCTT
7853156 ATCATTAATG
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
102 15 0.19
104 65 0.81
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (102 bp):
ATTAATTGACTTATCATTAATGGCTTATAGTGTAATTAATTGACTTATCATTCACAATTACTACG
TTCCTTTGAATAAACACAATAATTGGCTTCTTAGCAC
Found at i:7853163 original size:82 final size:82
Alignment explanation
Indices: 7853064--7853215 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 82
7853054 CTTAGCACAT
* * * * * *
7853064 TAATTGACTTATTATTAATGGTTTATAGTGTAATTAATTGACTTATCATTGGCAATTGCTATGTT
1 TAATTGACTTATCATTAATGGGTTATAGTATAATTAATTGACTTATAATTGGCAATTACTACGTT
7853129 TCTTTGAATAAACGCAG
66 TCTTTGAATAAACGCAG
* * *
7853146 TAATTGGCTTATCATTAATGGGTTATAGTATCATTAATTGGCTTATAATTGGCAATTACTACGTT
1 TAATTGACTTATCATTAATGGGTTATAGTATAATTAATTGACTTATAATTGGCAATTACTACGTT
7853211 TCTTT
66 TCTTT
7853216 AAATTAAAGC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 61 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (82 bp):
TAATTGACTTATCATTAATGGGTTATAGTATAATTAATTGACTTATAATTGGCAATTACTACGTT
TCTTTGAATAAACGCAG
Found at i:7853509 original size:23 final size:24
Alignment explanation
Indices: 7853465--7853511 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7853455 TTTAGAATAA
*
7853465 AAGTAACTTTGTGAATTTTAAAAT
1 AAGTAACTTTATGAATTTTAAAAT
*
7853489 AAGTAAGTTTATG-ATTTTAAAAT
1 AAGTAACTTTATGAATTTTAAAAT
7853512 TTTTGAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.43
Consensus pattern (24 bp):
AAGTAACTTTATGAATTTTAAAAT
Found at i:7861696 original size:21 final size:21
Alignment explanation
Indices: 7861672--7861719 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7861662 TCATTAATTT
* * *
7861672 TAATCTTACTATTATATTACC
1 TAATCTTACTACTATAATAAC
7861693 TAATCTTACTACTATAATAAC
1 TAATCTTACTACTATAATAAC
7861714 TAATCT
1 TAATCT
7861720 CACACTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (21 bp):
TAATCTTACTACTATAATAAC
Found at i:7863510 original size:11 final size:11
Alignment explanation
Indices: 7863494--7863518 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7863484 TTAATTAACG
7863494 AAAATAATTTT
1 AAAATAATTTT
7863505 AAAATAATTTT
1 AAAATAATTTT
7863516 AAA
1 AAA
7863519 TTTTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:7863560 original size:22 final size:23
Alignment explanation
Indices: 7863535--7863578 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7863525 TTAATTTGAT
7863535 TTTTAAACTA-AAT-TAACATAAA
1 TTTT-AACTACAATATAACATAAA
7863557 TTTTAACTACAATATAACATAA
1 TTTTAACTACAATATAACATAA
7863579 TCTAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 7 0.35
23 8 0.40
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (23 bp):
TTTTAACTACAATATAACATAAA
Found at i:7863768 original size:56 final size:56
Alignment explanation
Indices: 7863675--7863894 Score: 241
Period size: 57 Copynumber: 3.9 Consensus size: 56
7863665 ATATTTTAGA
* * *
7863675 AAAAATTAAAAGTATCAATTTTTCTTGAAGATTAAATTTCAAAAAATACTTTAAGG
1 AAAAATTAAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAATACTTTAAGG
* * * ** *
7863731 AAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAATTAAAAAAAAATACTTTAACG
1 AAAAATTAAAAGTATCAATTTTTCTTAAAAATAAAATT-TCAAAAAATACTTTAAGG
** * * *
7863788 AAAGGTTGAAAGTATTAATTTTT-TTAAAAAATAAAATTTC--AAAATA-TTTAAGA
1 AAAAATTAAAAGTATCAATTTTTCTT-AAAAATAAAATTTCAAAAAATACTTTAAGG
*
7863841 AAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAATATCTTT
1 AAAAATTAAAAGTATCAATTTTTCTTAAAAATAAAA-TTTCAAAAAATA-CTTT
7863895 CGAGGGAAGA
Statistics
Matches: 137, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
53 35 0.26
54 12 0.09
56 42 0.31
57 45 0.33
58 3 0.02
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.36
Consensus pattern (56 bp):
AAAAATTAAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAATACTTTAAGG
Found at i:7865772 original size:40 final size:40
Alignment explanation
Indices: 7865694--7865773 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
7865684 GTAAAGCCTT
* * * * **
7865694 TGATGAAATGAGCTTTTTATATTTTTAAAAGTTGTTGAAC
1 TGATGAAATAAGCATTTTATATTTTCAAAAATAATTGAAC
7865734 TGATGAAATAAGCATTTTATATTTTCAAAAATAATTGAAC
1 TGATGAAATAAGCATTTTATATTTTCAAAAATAATTGAAC
7865774 CGCTATTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (40 bp):
TGATGAAATAAGCATTTTATATTTTCAAAAATAATTGAAC
Found at i:7868341 original size:11 final size:10
Alignment explanation
Indices: 7868327--7868361 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
7868317 TTCTTTTCAC
7868327 TTTCTTTTTCT
1 TTTCTTTTT-T
7868338 TTTCTTTTTT
1 TTTCTTTTTT
7868348 TTTCCTTTTTT
1 TTT-CTTTTTT
7868359 TTT
1 TTT
7868362 AATTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:7869026 original size:27 final size:27
Alignment explanation
Indices: 7868995--7869071 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
7868985 ATTTTAATAT
*
7868995 TTATTATATTAATAAATAATCATTAAA
1 TTATTATATTAATAAATAATAATTAAA
* *
7869022 TTATT-TTTATAATAAATAATAATTATA
1 TTATTATAT-TAATAAATAATAATTAAA
* *
7869049 TTAATA-AATAATGAAATAATAAT
1 TTATTATATTAAT-AAATAATAAT
7869072 AATAATAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (27 bp):
TTATTATATTAATAAATAATAATTAAA
Found at i:7869042 original size:3 final size:3
Alignment explanation
Indices: 7869030--7869091 Score: 72
Period size: 3 Copynumber: 20.3 Consensus size: 3
7869020 AATTATTTTT
* * *
7869030 ATA ATAA ATA ATA ATT ATA TTA ATAA ATA ATG A-A ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
7869076 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
7869092 ATCATTTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
2 1 0.02
3 43 0.86
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7875263 original size:21 final size:21
Alignment explanation
Indices: 7875224--7875263 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7875214 AGGGCAGACA
*
7875224 TCAGAAAGCTACAATGCCAAC
1 TCAGAAAGCTACAACGCCAAC
* *
7875245 TCAGAAAGTTTCAACGCCA
1 TCAGAAAGCTACAACGCCA
7875264 CATCCTCTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (21 bp):
TCAGAAAGCTACAACGCCAAC
Found at i:7878815 original size:37 final size:35
Alignment explanation
Indices: 7878772--7878923 Score: 119
Period size: 37 Copynumber: 4.3 Consensus size: 35
7878762 TGTGTGCTTC
7878772 TCTAAAAAAAATAAAGAACAAGTAATGAAAGTGTTT
1 TCTAAAAAAAA-AAAGAACAAGTAATGAAAGTGTTT
** * * **
7878808 TCATAAAAAAATAAGTGAACAAGTAGTGGAAGTG-GG
1 TC-TAAAAAAA-AAAAGAACAAGTAATGAAAGTGTTT
** * * *
7878844 TCTCAAAAAAAAGGAGAATAAGTAATAAAAATGTTT
1 TCT-AAAAAAAAAAAGAACAAGTAATGAAAGTGTTT
* * *
7878880 TC-AAAAAAAAAAAAAACAAGTAATGAGAGTATTTT
1 TCTAAAAAAAAAAAGAACAAGTAATGAAAGT-GTTT
7878915 TCTAAAAAA
1 TCTAAAAAA
7878924 TAGGAGAAAT
Statistics
Matches: 87, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
34 21 0.24
35 21 0.24
36 19 0.22
37 25 0.29
38 1 0.01
ACGTcount: A:0.55, C:0.06, G:0.16, T:0.23
Consensus pattern (35 bp):
TCTAAAAAAAAAAAGAACAAGTAATGAAAGTGTTT
Found at i:7878994 original size:49 final size:49
Alignment explanation
Indices: 7878932--7879129 Score: 176
Period size: 48 Copynumber: 4.0 Consensus size: 49
7878922 AATAGGAGAA
* *
7878932 ATTAAAAGGAATAGCTAATAGGGGTGTTTCCCTAAAAAATAAAAAAATT
1 ATTAAAAGGAATAGCTAATAGGAGTATTTCCCTAAAAAATAAAAAAATT
* * * *
7878981 ATTAAAAGAAATAGGTAA-GGGAATATTTCCCTAAAAAATAAAAGAAA-T
1 ATTAAAAGGAATAGCTAATAGGAGTATTTCCCTAAAAAATAAAA-AAATT
* * *
7879029 ACTAAAAGGAATA---AATGAGGAAGTCGTTTCTCTAAAAAAT-AAAAAATT
1 ATTAAAAGGAATAGCTAAT-AGG-AGT-ATTTCCCTAAAAAATAAAAAAATT
* *
7879077 AAAAATTAAAAGCAATAGCTAAT-GGAGTATTTTCCTAAAAAATAAAAAAATT
1 ----ATTAAAAGGAATAGCTAATAGGAGTATTTCCCTAAAAAATAAAAAAATT
7879129 A
1 A
7879130 ATAATAAAAG
Statistics
Matches: 118, Mismatches: 17, Indels: 29
0.72 0.10 0.18
Matches are distributed among these distances:
45 2 0.02
47 5 0.04
48 40 0.34
49 32 0.27
51 12 0.10
52 22 0.19
53 2 0.02
55 3 0.03
ACGTcount: A:0.54, C:0.08, G:0.14, T:0.25
Consensus pattern (49 bp):
ATTAAAAGGAATAGCTAATAGGAGTATTTCCCTAAAAAATAAAAAAATT
Found at i:7879204 original size:36 final size:35
Alignment explanation
Indices: 7879076--7879444 Score: 157
Period size: 36 Copynumber: 10.7 Consensus size: 35
7879066 AATAAAAAAT
* * * *
7879076 TAAAAATTAAAAGCAAT-AGCTAATGGAGTATTTTCC
1 TAAAAAATAAAAG-AATAAG-TAATGAAGTGTTTCCC
* * *
7879112 TAAAAAATAAAAAAATTAA-TAATAAAAGTGTTTTCCT
1 TAAAAAATAAAAGAA-TAAGTAAT-GAAGTG-TTTCCC
7879149 TAAGAAAAATAGAAA-AATAAGTAATGCAAGTGTTTCCC
1 T-A-AAAAATA-AAAGAATAAGTAATG-AAGTGTTTCCC
* **
7879187 TAAAAAATAAAAGAATAAGTAATGTGAGTGTTTATC
1 TAAAAAATAAAAGAATAAGTAATG-AAGTGTTTCCC
* * * * *
7879223 TGAAAAATAAGAA-AACAAGTAATATAAATATTT--C
1 TAAAAAATAA-AAGAATAAGTAAT-GAAGTGTTTCCC
*
7879257 T-CAAAA-AAAA-AA-AA-TAAT-AAGTGTTTCCC
1 TAAAAAATAAAAGAATAAGTAATGAAGTGTTTCCC
* *
7879286 TAAAAAA-AAAA-AAGTAA-T-GTGAA-TGTTT-CT
1 TAAAAAATAAAAGAA-TAAGTAATGAAGTGTTTCCC
* * * * *
7879316 TTAAAAATAAGAGAATAAGTAATGAGAGTTTTTTCT
1 TAAAAAATAAAAGAATAAGTAATGA-AGTGTTTCCC
** *
7879352 TAAAAAATAGTAGAATAAGTAATGAAGATGTTTTCC
1 TAAAAAATAAAAGAATAAGTAATGAAG-TGTTTCCC
* ** * *
7879388 T-AAAAGTAATGGAATAAGTAAT-AAGATATTTCTC
1 TAAAAAATAAAAGAATAAGTAATGAAG-TGTTTCCC
* *
7879422 TAAAAAATAAGAGAATAATTAAT
1 TAAAAAATAAAAGAATAAGTAAT
7879445 AAGAATGCTT
Statistics
Matches: 262, Mismatches: 44, Indels: 55
0.73 0.12 0.15
Matches are distributed among these distances:
27 6 0.02
29 6 0.02
30 19 0.07
31 16 0.06
32 10 0.04
33 7 0.03
34 13 0.05
35 50 0.19
36 95 0.36
37 9 0.03
38 10 0.04
39 18 0.07
40 3 0.01
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (35 bp):
TAAAAAATAAAAGAATAAGTAATGAAGTGTTTCCC
Found at i:7879276 original size:27 final size:29
Alignment explanation
Indices: 7879246--7879303 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
7879236 AACAAGTAAT
*
7879246 ATAAATATTTCTC-AAAAAAAAAAAA-TA
1 ATAAATATTTCCCTAAAAAAAAAAAAGTA
* *
7879273 ATAAGTGTTTCCCTAAAAAAAAAAAAGTA
1 ATAAATATTTCCCTAAAAAAAAAAAAGTA
7879302 AT
1 AT
7879304 GTGAATGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 10 0.38
28 12 0.46
29 4 0.15
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (29 bp):
ATAAATATTTCCCTAAAAAAAAAAAAGTA
Found at i:7879383 original size:71 final size:69
Alignment explanation
Indices: 7879317--7879448 Score: 162
Period size: 71 Copynumber: 1.9 Consensus size: 69
7879307 AATGTTTCTT
* *
7879317 TAAAAATAA-GAGAATAAGTAATGAGAGT-TTTTTCTTAAAAAAT-AGTAGAATAAGTAATGAAG
1 TAAAAATAATG-GAATAAGTAATAAGA-TATTTCTC-TAAAAAATAAG-AGAATAAGTAAT-AAG
7879379 ATGTTTTCC
61 ATGTTTTCC
* *
7879388 TAAAAGTAATGGAATAAGTAATAAGATATTTCTCTAAAAAATAAGAGAATAATTAATAAGA
1 TAAAAATAATGGAATAAGTAATAAGATATTTCTCTAAAAAATAAGAGAATAAGTAATAAGA
7879449 ATGCTTCCCT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
69 4 0.07
70 20 0.37
71 29 0.54
72 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (69 bp):
TAAAAATAATGGAATAAGTAATAAGATATTTCTCTAAAAAATAAGAGAATAAGTAATAAGATGTT
TTCC
Found at i:7879438 original size:35 final size:33
Alignment explanation
Indices: 7879318--7879448 Score: 124
Period size: 35 Copynumber: 3.8 Consensus size: 33
7879308 ATGTTTCTTT
*
7879318 AAAAATAAGAGAATAAGTAATGAGAGTTTTTTCTTA
1 AAAAATAAGAGAATAAGTAAT-A-AGATTTTTC-TA
7879354 AAAAAT-AGTAGAATAAGTAATGAAGATGTTTTCCT-
1 AAAAATAAG-AGAATAAGTAAT-AAGAT-TTTT-CTA
*
7879389 AAAAGTAATG-GAATAAGTAATAAGATATTTCTCTA
1 AAAAATAA-GAGAATAAGTAATAAGAT-TTT-TCTA
*
7879424 AAAAATAAGAGAATAATTAATAAGA
1 AAAAATAAGAGAATAAGTAATAAGA
7879449 ATGCTTCCCT
Statistics
Matches: 82, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
34 11 0.13
35 43 0.52
36 26 0.32
37 2 0.02
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (33 bp):
AAAAATAAGAGAATAAGTAATAAGATTTTTCTA
Found at i:7879463 original size:71 final size:71
Alignment explanation
Indices: 7879328--7879463 Score: 163
Period size: 70 Copynumber: 1.9 Consensus size: 71
7879318 AAAAATAAGA
* * * *
7879328 GAATAAGTAATGAGAGTTTTTTCTTAAAAAATAGTAGAATAAGTAATGAAGATGTTTTCCTAAAA
1 GAATAAGTAATAAGAGTTTTCTCTTAAAAAATAGTAGAATAAGTAATGAAGATGCTTCCCTAAAA
7879393 GTAATG
66 GTAATG
*
7879399 GAATAAGTAATAAGA-TATTTCTC-TAAAAAATAAG-AGAATAATTAAT-AAGAATGCTTCCCTT
1 GAATAAGTAATAAGAGT-TTTCTCTTAAAAAAT-AGTAGAATAAGTAATGAAG-ATGCTTCCC-T
7879460 AAAA
62 AAAA
7879464 ATTAAATAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
69 3 0.05
70 27 0.48
71 26 0.46
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.32
Consensus pattern (71 bp):
GAATAAGTAATAAGAGTTTTCTCTTAAAAAATAGTAGAATAAGTAATGAAGATGCTTCCCTAAAA
GTAATG
Found at i:7879783 original size:2 final size:2
Alignment explanation
Indices: 7879776--7879805 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7879766 CAGTGTGGGT
7879776 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7879806 ATGAGAAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7884932 original size:110 final size:111
Alignment explanation
Indices: 7884798--7885000 Score: 311
Period size: 110 Copynumber: 1.8 Consensus size: 111
7884788 ATCTAATTAA
7884798 TTGCAAATGAAAATTTTAAATTTCACAAATAAAATTAATAAAATAACACATACTCTTAAAATATA
1 TTGCAAATGAAAATTTTAAATTTCACAAATAAAATTAATAAAATAACACATACTCTTAAAATATA
* *
7884863 TTTAAAATAAATTAAT-TAA-TTAAAAAATTTACATTATCTGATTCG
66 TTAAAAATAAA-AAATGTAATTTAAAAAATTTACATTATCTGATTCG
* * * * * *
7884908 TTGCTAATGAAATTTTTAAATTTCATAAATAAAATTAATAAAATAACATATACTGTTAGAATATA
1 TTGCAAATGAAAATTTTAAATTTCACAAATAAAATTAATAAAATAACACATACTCTTAAAATATA
7884973 TTAAAAATAAAAAATGTAATTTAAAAAA
66 TTAAAAATAAAAAATGTAATTTAAAAAA
7885001 AAAAGCATGT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
109 3 0.04
110 72 0.87
111 8 0.10
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (111 bp):
TTGCAAATGAAAATTTTAAATTTCACAAATAAAATTAATAAAATAACACATACTCTTAAAATATA
TTAAAAATAAAAAATGTAATTTAAAAAATTTACATTATCTGATTCG
Found at i:7885239 original size:12 final size:12
Alignment explanation
Indices: 7885222--7885254 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7885212 AACCCATAAA
7885222 AGCTCTCTCTCT
1 AGCTCTCTCTCT
7885234 AGCTCTCTCTCT
1 AGCTCTCTCTCT
7885246 --CTCTCTCTC
1 AGCTCTCTCTC
7885255 CAAAACAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 9 0.43
12 12 0.57
ACGTcount: A:0.06, C:0.45, G:0.06, T:0.42
Consensus pattern (12 bp):
AGCTCTCTCTCT
Found at i:7888403 original size:23 final size:23
Alignment explanation
Indices: 7888361--7888404 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7888351 TTCAACTTGA
*
7888361 CAAAATAACTCAACTTAAAAGTT
1 CAAAATAACTCAACTCAAAAGTT
7888384 CAAAATTAACTCAA-TCAAAAG
1 CAAAA-TAACTCAACTCAAAAG
7888405 AGTTCAGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.23
Consensus pattern (23 bp):
CAAAATAACTCAACTCAAAAGTT
Found at i:7888449 original size:85 final size:84
Alignment explanation
Indices: 7888360--7888517 Score: 190
Period size: 84 Copynumber: 1.9 Consensus size: 84
7888350 ATTCAACTTG
* * * * *
7888360 ACAAAATAACTCAACTTAAAAGTTCAAAATTAACTCAATCAAAAGAGTTCAGATCTATAAAATAC
1 ACAAAATAACTCAAC-CAAAAGCTCAAAATCAACTCAACCAAAAGAGCTCAGATCTATAAAATAC
7888425 ATTCATAAAAGCTCAACTCA
65 ATTCATAAAAGCTCAACTCA
* * * * * * * *
7888445 ACAAATTAACTCGACCAAAAGCTCAAACTCAGCTTAGCCAAAAGAGCTCAGATCTATAAAATGCC
1 ACAAAATAACTCAACCAAAAGCTCAAAATCAACTCAACCAAAAGAGCTCAGATCTATAAAATACA
7888510 TTCATAAA
66 TTCATAAA
7888518 TGTCTACATC
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
84 47 0.78
85 13 0.22
ACGTcount: A:0.47, C:0.22, G:0.08, T:0.23
Consensus pattern (84 bp):
ACAAAATAACTCAACCAAAAGCTCAAAATCAACTCAACCAAAAGAGCTCAGATCTATAAAATACA
TTCATAAAAGCTCAACTCA
Found at i:7888638 original size:85 final size:85
Alignment explanation
Indices: 7888412--7888706 Score: 187
Period size: 85 Copynumber: 3.5 Consensus size: 85
7888402 AAGAGTTCAG
* * ** * * *
7888412 ATCTATAAAATA-CATTCATAAAAGCTC-AACTCAACAAATTAACTCGAC-CAAAAGCTCAAACT
1 ATCTACAAAATATC-TTCAT-AAAGATCAAACTCAACAAAACAACTCGACTTAAAAACTCGAACT
*
7888474 CAGCTT-AGCCAAAAGAGCTC-A
64 CAGCTTGA-CTAAAAGAGCTCGA
* ** * * * * ** * * *
7888495 GATCTATAAAATGCCTTCATAAATG-TC-TACATCGACAAAATAGCTTAACTGAAGAACTCGAAT
1 -ATCTACAAAATATCTTCATAAA-GATCAAAC-TCAACAAAACAACTCGACTTAAAAACTCGAAC
* * *
7888558 TCAGCTGTGTC-AAAAGATCTTGA
63 TCAGCT-TGACTAAAAGAGCTCGA
* *
7888581 ATTTACAAAATA-CTATCATAAA-AGTCCAACTCAACAAAACAACTCGACTTAAAAACTCGAACT
1 ATCTACAAAATATCT-TCATAAAGA-TCAAACTCAACAAAACAACTCGACTTAAAAACTCGAACT
* *
7888644 CTGCTTGACTAAAAGAGCTCGG
64 CAGCTTGACTAAAAGAGCTCGA
*
7888666 ATCTACAAAATATCTTCATAAAGATCAAACTCAATAAAACA
1 ATCTACAAAATATCTTCATAAAGATCAAACTCAACAAAACA
7888707 GCTTAGCCAA
Statistics
Matches: 162, Mismatches: 35, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
83 7 0.04
84 35 0.22
85 112 0.69
86 8 0.05
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (85 bp):
ATCTACAAAATATCTTCATAAAGATCAAACTCAACAAAACAACTCGACTTAAAAACTCGAACTCA
GCTTGACTAAAAGAGCTCGA
Found at i:7889091 original size:56 final size:56
Alignment explanation
Indices: 7889031--7889222 Score: 163
Period size: 56 Copynumber: 3.4 Consensus size: 56
7889021 CAAATAGCTT
* * **
7889031 ATCTTGATAAAATACTTTCATAAAGGTTTAGCTTGATCACTTCAACCAAAGAGTTC
1 ATCTTGATAAAATACTTTCATAAAAGCTTAGCTTGATCACTTTGACCAAAGAGTTC
* * **
7889087 ATCTT-AGTAAAATA-TCTTCATAAAAGCTTAACTCGATCACTTTGACCAAAGAACTC
1 ATCTTGA-TAAAATACT-TTCATAAAAGCTTAGCTTGATCACTTTGACCAAAGAGTTC
* * ** * * ** **
7889143 ATCTTGGTAAATTTTTTTCGTAAAAGCTTAGTTTGATCACTTTGGTCAATTAGTTC
1 ATCTTGATAAAATACTTTCATAAAAGCTTAGCTTGATCACTTTGACCAAAGAGTTC
* * *
7889199 ATCTCGATATATTACTTTCATAAA
1 ATCTTGATAAAATACTTTCATAAA
7889223 GATTTAGCTT
Statistics
Matches: 105, Mismatches: 27, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
55 2 0.02
56 102 0.97
57 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (56 bp):
ATCTTGATAAAATACTTTCATAAAAGCTTAGCTTGATCACTTTGACCAAAGAGTTC
Found at i:7889147 original size:112 final size:112
Alignment explanation
Indices: 7888939--7889182 Score: 242
Period size: 112 Copynumber: 2.2 Consensus size: 112
7888929 ATTACCTTTG
* * *
7888939 TAAAGGCTTAGCTTGATCACCTCACCCAAAAAGCTGATCTTGGTAAATTGCTTTCATAAAAACTT
1 TAAAGGCTTAGCTTGATCACCTCAACCAAAAAGCTCATCTTAGTAAATTGCTTTCATAAAAACTT
* * * *
7889004 AACACAGTCACCTCGATCAAATAGCTTATCTTGATAAAATACTTTCA
66 AACACAGTCACCTCGACCAAAGAACTCATCTTGATAAAATACTTTCA
* * * * *
7889051 TAAAGGTTTAGCTTGATCACTTCAACCAAAGAGTTCATCTTAGTAAAATAT-C-TTCATAAAAGC
1 TAAAGGCTTAGCTTGATCACCTCAACCAAAAAGCTCATCTTAGT-AAAT-TGCTTTCATAAAAAC
* * * * * ** *
7889114 TTAACTC-GATCACTTTGACCAAAGAACTCATCTTGGTAAATTTTTTTCG
64 TTAACACAG-TCACCTCGACCAAAGAACTCATCTTGATAAAATACTTTCA
* *
7889163 TAAAAGCTTAGTTTGATCAC
1 TAAAGGCTTAGCTTGATCAC
7889183 TTTGGTCAAT
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
111 1 0.01
112 99 0.93
113 5 0.05
114 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (112 bp):
TAAAGGCTTAGCTTGATCACCTCAACCAAAAAGCTCATCTTAGTAAATTGCTTTCATAAAAACTT
AACACAGTCACCTCGACCAAAGAACTCATCTTGATAAAATACTTTCA
Found at i:7889284 original size:18 final size:18
Alignment explanation
Indices: 7889263--7889298 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7889253 TCAGTTTGAC
*
7889263 TAAAATAGCTCAACTCGA
1 TAAAAAAGCTCAACTCGA
*
7889281 TAAAAAAGCTTAACTCGA
1 TAAAAAAGCTCAACTCGA
7889299 CTGAATTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.22
Consensus pattern (18 bp):
TAAAAAAGCTCAACTCGA
Found at i:7889578 original size:19 final size:19
Alignment explanation
Indices: 7889554--7889610 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
7889544 TTTTTAAGAC
7889554 TAACTCAACCAAAAGAACT
1 TAACTCAACCAAAAGAACT
* **
7889573 TAACTCGATTAAAAGAGA-T
1 TAACTCAACCAAAAGA-ACT
* *
7889592 TAACCCAGCCAAAAGAACT
1 TAACTCAACCAAAAGAACT
7889611 CAACCCGAAC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
18 1 0.04
19 26 0.93
20 1 0.04
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.18
Consensus pattern (19 bp):
TAACTCAACCAAAAGAACT
Found at i:7891224 original size:2 final size:2
Alignment explanation
Indices: 7891217--7891247 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7891207 CCTAAAGCAT
7891217 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7891248 TACATATCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7915525 original size:28 final size:28
Alignment explanation
Indices: 7915477--7915531 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
7915467 GATGATAATA
* *
7915477 TACTTCATCTGAGAAGGAAAAAAAAATT
1 TACTTCATCTGACAAGAAAAAAAAAATT
*
7915505 TACTTCATCTGCACAAAAAAAAAAAAA
1 TACTTCATCTG-ACAAGAAAAAAAAAA
7915532 AAAAAGCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.22
Consensus pattern (28 bp):
TACTTCATCTGACAAGAAAAAAAAAATT
Found at i:7918113 original size:16 final size:15
Alignment explanation
Indices: 7918072--7918125 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
7918062 AAATTTTAAC
7918072 ATTTAATTTT-TAT-
1 ATTTAATTTTATATA
7918085 ATTATAA-TTTATATAA
1 ATT-TAATTTTATAT-A
7918101 ATTTAATTTTATATTA
1 ATTTAATTTTATA-TA
*
7918117 TTTTAATTT
1 ATTTAATTT
7918126 AATCACTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 6 0.18
14 6 0.18
15 3 0.09
16 18 0.53
17 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTAATTTTATATA
Found at i:7918482 original size:15 final size:15
Alignment explanation
Indices: 7918459--7918490 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7918449 TTTATATAAA
7918459 TTTAATTTTTTATTT
1 TTTAATTTTTTATTT
*
7918474 TTTATTTTTTTATTT
1 TTTAATTTTTTATTT
7918489 TT
1 TT
7918491 ATAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTAATTTTTTATTT
Found at i:7919311 original size:12 final size:12
Alignment explanation
Indices: 7919288--7919319 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7919278 AGTACTATCT
7919288 TATATA-TA-TA
1 TATATATTATTA
7919298 TATATATTATTA
1 TATATATTATTA
7919310 TATATATTAT
1 TATATATTAT
7919320 ATAATGACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 6 0.30
11 2 0.10
12 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATATATTATTA
Found at i:7924045 original size:20 final size:20
Alignment explanation
Indices: 7924020--7924059 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7924010 AAATGAAACA
7924020 TTGTAAGAAAAGATTCAACC
1 TTGTAAGAAAAGATTCAACC
7924040 TTGTAAGAAAAGATTCAACC
1 TTGTAAGAAAAGATTCAACC
7924060 ACTGATGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
TTGTAAGAAAAGATTCAACC
Found at i:7924552 original size:8 final size:7
Alignment explanation
Indices: 7924522--7924549 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
7924512 TCACGTCTAT
7924522 GGCAAAA
1 GGCAAAA
7924529 GGCAAAA
1 GGCAAAA
7924536 GGCAAAA
1 GGCAAAA
7924543 GGCAAAA
1 GGCAAAA
7924550 AGGTAATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00
Consensus pattern (7 bp):
GGCAAAA
Found at i:7925668 original size:14 final size:14
Alignment explanation
Indices: 7925633--7925675 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7925623 GGTGTCAAAA
7925633 AGAGAAAAAGAAAG
1 AGAGAAAAAGAAAG
*
7925647 A-ACCAAAAAGAAAG
1 AGA-GAAAAAGAAAG
*
7925661 AGAGAAAAAAAAAG
1 AGAGAAAAAGAAAG
7925675 A
1 A
7925676 AGGGAAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 1 0.04
14 22 0.92
15 1 0.04
ACGTcount: A:0.74, C:0.05, G:0.21, T:0.00
Consensus pattern (14 bp):
AGAGAAAAAGAAAG
Found at i:7931848 original size:22 final size:21
Alignment explanation
Indices: 7931823--7931864 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7931813 AAAGTTTAAA
*
7931823 AGGTGTTCATGAGAAAATTTTG
1 AGGTGATCA-GAGAAAATTTTG
*
7931845 AGGTGATCAGTGAAAATTTT
1 AGGTGATCAGAGAAAATTTT
7931865 CTTTCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (21 bp):
AGGTGATCAGAGAAAATTTTG
Found at i:7933660 original size:22 final size:20
Alignment explanation
Indices: 7933601--7933660 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
7933591 GATTCCATAG
*
7933601 ACTTATTCGAAAAGATTTTT
1 ACTTATTTGAAAAGATTTTT
* * *
7933621 --TTATTTTAAAAAAATTTTAA
1 ACTTA-TTTGAAAAGATTTT-T
7933641 ACTTATTTGAAAAGATTTTT
1 ACTTATTTGAAAAGATTTTT
7933661 TTATTATTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
18 3 0.10
19 11 0.38
21 12 0.41
22 3 0.10
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (20 bp):
ACTTATTTGAAAAGATTTTT
Found at i:7933667 original size:21 final size:21
Alignment explanation
Indices: 7933603--7933668 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 21
7933593 TTCCATAGAC
*
7933603 TTATTCGAAAAGATTTTTTTA
1 TTATTTGAAAAGATTTTTTTA
* * **
7933624 -T-TTT-AAAAAAATTTTAAA
1 TTATTTGAAAAGATTTTTTTA
7933642 CTTATTTGAAAAGATTTTTTTA
1 -TTATTTGAAAAGATTTTTTTA
7933664 TTATT
1 TTATT
7933669 AATTTTATTA
Statistics
Matches: 32, Mismatches: 9, Indels: 8
0.65 0.18 0.16
Matches are distributed among these distances:
18 10 0.31
19 2 0.06
20 2 0.06
21 8 0.25
22 10 0.31
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (21 bp):
TTATTTGAAAAGATTTTTTTA
Found at i:7933676 original size:12 final size:12
Alignment explanation
Indices: 7933659--7933722 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
7933649 GAAAAGATTT
7933659 TTTTATTATTAA
1 TTTTATTATTAA
*
7933671 TTTTATTA-AAA
1 TTTTATTATTAA
* *
7933682 TTTCATTCTTAA
1 TTTTATTATTAA
* *
7933694 TGTTACTATT-A
1 TTTTATTATTAA
*
7933705 TTATTATTATTAT
1 TT-TTATTATTAA
7933718 TTTTA
1 TTTTA
7933723 AAAAATAGCC
Statistics
Matches: 38, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
11 10 0.26
12 26 0.68
13 2 0.05
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (12 bp):
TTTTATTATTAA
Found at i:7933824 original size:26 final size:22
Alignment explanation
Indices: 7933790--7933859 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
7933780 AATAAAACAG
7933790 ATAAA-AAATTAAAAATGAAATAAA
1 ATAAATAAATTAAAAAT---ATAAA
7933814 ATGAAATAAATTAAAAATATAAA
1 AT-AAATAAATTAAAAATATAAA
* *
7933837 ATAAATAAAAATAAAAAAATAAA
1 ATAAAT-AAATTAAAAATATAAA
7933860 GTGAAAATAG
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.10
23 21 0.51
24 2 0.05
25 3 0.07
26 11 0.27
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (22 bp):
ATAAATAAATTAAAAATATAAA
Found at i:7933849 original size:10 final size:10
Alignment explanation
Indices: 7933770--7933859 Score: 50
Period size: 10 Copynumber: 9.2 Consensus size: 10
7933760 ATAAACAAGT
*
7933770 AATAAAAATC
1 AATAAAAATA
*
7933780 AAT-AAAACA
1 AATAAAAATA
*
7933789 GAT-AAAA-A
1 AATAAAAATA
*
7933797 ATTAAAAATGA
1 AATAAAAAT-A
7933808 AAT-AAAATGA
1 AATAAAAAT-A
7933818 AATAAATTAA-A
1 AATAAA--AATA
7933829 AATATAAAATA
1 AATA-AAAATA
7933840 AATAAAAAT-
1 AATAAAAATA
7933849 AA-AAAAATA
1 AATAAAAATA
7933858 AA
1 AA
7933860 GTGAAAATAG
Statistics
Matches: 65, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
8 8 0.12
9 18 0.28
10 20 0.31
11 15 0.23
12 2 0.03
13 2 0.03
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.20
Consensus pattern (10 bp):
AATAAAAATA
Found at i:7933855 original size:18 final size:18
Alignment explanation
Indices: 7933758--7933875 Score: 69
Period size: 21 Copynumber: 5.9 Consensus size: 18
7933748 ACATTCAATA
7933758 AAATAAACAAGTAATAAAAAT
1 AAATAAA-AA-TAA-AAAAAT
* *
7933779 CAATAAAACAGATAAAAAATT
1 AAAT-AAA-A-ATAAAAAAAT
7933800 AAA-AATGAAATAAAATGAAAT
1 AAATAA--AAATAAAA--AAAT
*
7933821 AAATTAAAAAT-ATAAAAT
1 AAA-TAAAAATAAAAAAAT
7933839 AAATAAAAATAAAAAAAT
1 AAATAAAAATAAAAAAAT
*
7933857 AAAGTGAAAATAGAAAAAA
1 AAA-TAAAAATA-AAAAAA
7933876 AAACCTGTGA
Statistics
Matches: 79, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
17 7 0.09
18 16 0.20
19 15 0.19
20 9 0.11
21 21 0.27
22 8 0.10
23 3 0.04
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.19
Consensus pattern (18 bp):
AAATAAAAATAAAAAAAT
Found at i:7934805 original size:3 final size:3
Alignment explanation
Indices: 7934797--7934874 Score: 58
Period size: 3 Copynumber: 27.3 Consensus size: 3
7934787 GAAAGGAAAG
* * * * *
7934797 AAT AAT AAT AAT AAT AAT AAT AAT -AT TAT TAT TAT TAT ATT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7934843 AAT ACAT TAT AAT AAT AA- AA- AAT -AT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7934875 CTAGTAGATT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
2 10 0.15
3 53 0.82
4 2 0.03
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:7935480 original size:59 final size:60
Alignment explanation
Indices: 7935412--7935531 Score: 188
Period size: 59 Copynumber: 2.0 Consensus size: 60
7935402 GAAATTAAAA
* *
7935412 TCATATGAAAACAAGAATTGAAGTAAGTTAGAAA-AAATAGAGAACACATAATTATTACT
1 TCATATGAAAACAAGAATTGAAGTAAATTAGAAAGAAATAGAAAACACATAATTATTACT
** *
7935471 TCATATGAAAACAAGAATTGAAGTAAATTAGAAAGAGCTGGAAAACACATAATTATTACT
1 TCATATGAAAACAAGAATTGAAGTAAATTAGAAAGAAATAGAAAACACATAATTATTACT
7935531 T
1 T
7935532 TTATTGAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
59 33 0.60
60 22 0.40
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (60 bp):
TCATATGAAAACAAGAATTGAAGTAAATTAGAAAGAAATAGAAAACACATAATTATTACT
Found at i:7937142 original size:20 final size:21
Alignment explanation
Indices: 7937098--7937142 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
7937088 AAAATTAATA
*
7937098 CAAA-AATTAATTTTATTTAT
1 CAAATAATTAAATTTATTTAT
*
7937118 -TAATAATTAAATTT-TTTAT
1 CAAATAATTAAATTTATTTAT
7937137 CAAATA
1 CAAATA
7937143 TAAGATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 4
0.74 0.11 0.15
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
CAAATAATTAAATTTATTTAT
Found at i:7939565 original size:16 final size:16
Alignment explanation
Indices: 7939544--7939601 Score: 98
Period size: 16 Copynumber: 3.6 Consensus size: 16
7939534 AGTGTAGATA
7939544 CCCATTTTGGTCTGGG
1 CCCATTTTGGTCTGGG
7939560 CCCATTTTGGTCTGGG
1 CCCATTTTGGTCTGGG
*
7939576 CCCATTTTGGTTTGGG
1 CCCATTTTGGTCTGGG
*
7939592 CCCAATTTGG
1 CCCATTTTGG
7939602 CCCATTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.09, C:0.24, G:0.29, T:0.38
Consensus pattern (16 bp):
CCCATTTTGGTCTGGG
Found at i:7939631 original size:26 final size:26
Alignment explanation
Indices: 7939574--7939639 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
7939564 TTTTGGTCTG
* * * *
7939574 GGCCCATTTTGGTTTGGGCCCAATTT
1 GGCCCATTTTGATTTGGACCCAACTA
7939600 GGCCCATTTTGATTT-GACCCAACTA
1 GGCCCATTTTGATTTGGACCCAACTA
*
7939625 GGCCCCATTTCGATT
1 GG-CCCATTTTGATT
7939640 AGGCCCATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 9 0.26
26 25 0.74
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
GGCCCATTTTGATTTGGACCCAACTA
Found at i:7939679 original size:3 final size:3
Alignment explanation
Indices: 7939671--7939740 Score: 101
Period size: 3 Copynumber: 24.0 Consensus size: 3
7939661 GATGCTTTTA
7939671 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT CATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
*
7939716 A-T ATT ATT ATT ATT GTT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
7939741 TTTTTTTTCA
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
2 6 0.10
3 53 0.87
4 2 0.03
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7940110 original size:20 final size:18
Alignment explanation
Indices: 7940080--7940134 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
7940070 CTTGAGATTT
*
7940080 TGGAGTTAATTTATGGTTC
1 TGGAGTGAATTTA-GGTTC
*
7940099 TAGGAGTGAATTCAGGTTTC
1 T-GGAGTGAATTTAGG-TTC
7940119 TGGAGTTGAATTTAGG
1 TGGAG-TGAATTTAGG
7940135 GTTGTAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.24, C:0.05, G:0.31, T:0.40
Consensus pattern (18 bp):
TGGAGTGAATTTAGGTTC
Found at i:7940252 original size:31 final size:32
Alignment explanation
Indices: 7940217--7940282 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
7940207 TTTTTCTGGG
* * *
7940217 TTTTTTGAAGAACTTTG-AATTTTTGGTAGAA
1 TTTTTTGAAGAACGTTGAAATTTTCGGTAAAA
* *
7940248 TTTTTTGACGAAGGTTGAAATTTTCGGTAAAA
1 TTTTTTGAAGAACGTTGAAATTTTCGGTAAAA
7940280 TTT
1 TTT
7940283 CAACGAGATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.47
Consensus pattern (32 bp):
TTTTTTGAAGAACGTTGAAATTTTCGGTAAAA
Found at i:7940599 original size:19 final size:18
Alignment explanation
Indices: 7940577--7940616 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7940567 ATGTTTTTCA
*
7940577 TTTTTCATTTTATTTTTAT
1 TTTTTCATTTT-GTTTTAT
*
7940596 TTTTTGATTTTGTTTTAT
1 TTTTTCATTTTGTTTTAT
7940614 TTT
1 TTT
7940617 ATTTTAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.12, C:0.03, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTTCATTTTGTTTTAT
Found at i:7940781 original size:25 final size:25
Alignment explanation
Indices: 7940745--7940795 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
7940735 TTTTTAAAAT
7940745 AAATAAATAAAAATAAT-AATAATTC
1 AAATAAATAAAAA-AATCAATAATTC
*
7940770 AAATAACA-AAAAAAATCAATGATTC
1 AAATAA-ATAAAAAAATCAATAATTC
7940795 A
1 A
7940796 TTGTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 3 0.13
25 19 0.83
26 1 0.04
ACGTcount: A:0.67, C:0.08, G:0.02, T:0.24
Consensus pattern (25 bp):
AAATAAATAAAAAAATCAATAATTC
Found at i:7952036 original size:119 final size:119
Alignment explanation
Indices: 7951825--7952681 Score: 802
Period size: 119 Copynumber: 7.2 Consensus size: 119
7951815 TACATCTACT
* * ** * * *
7951825 TGATCTTAGCTTAGTCCAGATCATTTCTTATGATTTATGGTTTCGTCTTGATCATTCATTTTCGA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
* * * **
7951890 CCTCAACTC-ATTCCTGATCGTTTTATTTTGACTTATGATTTCGTCCCGATCACC
66 CCTCGACTCGA-TCCTGATCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
** * * * * * *
7951944 TGATCTTAACTTAGTCCAGATAATTTCTTATAATTCATGGTTCCATCTCGATCATTTATTTTTGA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
* * * * ** *
7952009 TCTGGACTCGATCTTGATCGCTTTATTTTGACTTGTGATTTGGTC-TCAGTCACC
66 CCTCGACTCGATCCTGATCGTTTTATTTTGACTTGTGATTTCATCTTGA-TCACC
* ** * ** *
7952063 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTAGTGGTTTTGTTTTAATCATTCATTTTTTA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
* * * * * * *
7952128 CCTCAACTCGGTCCT-AGTCATTTTATTTTGACTTATGGTTTCATCCTGGTCACC
66 CCTCGACTCGATCCTGA-TCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
* * * *
7952182 TAATCTTGGCTCAGTCTAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTCATTTTTTA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
** * ** *
7952247 CCTCGACTTAATCTTGATCGTTTTATTTTGACTTGTGATTTTGTCTTGATCATC
66 CCTCGACTCGATCCTGATCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
* * * * * *
7952301 TGATCTTGGCTCAGTCTAGATCATTTCTTAAT-ATTTGTGGTTCCATCCCGATAATTTATTTTTG
1 TGATCTTGGCTCAGTCCAGATCATTTCTT-ATGATTCGTGGTTTCATCTCGATCATTCATTTTTG
* * * *
7952365 ACCTTGACTCGATCCTGATCATTTTATTTTGACTTGTTG-TTTCATCTTGGTCACT
65 ACCTCGACTCGATCCTGATCGTTTTATTTTGACTTG-TGATTTCATCTTGATCACC
** * * * * *
7952420 TGATCTTACCTCAGTCTAGATCATTTCTTATGATTCGTAGTTTCGTTTCGATCATTCATTTTCGA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
* * * * *
7952485 CCTCGACTCGATCCTTG-TCGATATATTTTGAC-TGTGATTTTATCTTGGTCACT
66 CCTCGACTCGATCC-TGATCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
* * * *
7952538 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGATTTTAT-TCTGATCATTTATTTTTA
1 TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTC-GATCATTCATTTTTG
* * * *
7952602 ACCTCGACTCGATCCT-AGTCGCTTCA-TTTGACTCGTGATTTAATCTTGATCACC
65 ACCTCGACTCGATCCTGA-TCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
*
7952656 TGA-CTTTGGCTCAATCCA-AGTCATTT
1 TGATC-TTGGCTCAGTCCAGA-TCATTT
7952682 TTTTAAATTC
Statistics
Matches: 604, Mismatches: 118, Indels: 33
0.80 0.16 0.04
Matches are distributed among these distances:
117 13 0.02
118 130 0.22
119 452 0.75
120 9 0.01
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (119 bp):
TGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCTCGATCATTCATTTTTGA
CCTCGACTCGATCCTGATCGTTTTATTTTGACTTGTGATTTCATCTTGATCACC
Found at i:7952514 original size:357 final size:356
Alignment explanation
Indices: 7951827--7952617 Score: 949
Period size: 357 Copynumber: 2.2 Consensus size: 356
7951817 CATCTACTTG
* * ** * * **
7951827 ATCTTAGCTTAGTCCAGATCATTTCTTATGATTTATGGTTTCGTCTTGATCATTCATTTTCGACC
1 ATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCTGATCATTCATTTTTAACC
* * *
7951892 TCAACTCATTCCTGATCGTTTTATTTTGACTTATGATTTCGTCCCGATCACCTGATCTTAACTTA
66 TCGACTCAATCCTGATCGTTTTATTTTGACTTATGATTTCGTCCCGATCACCTGATCTTAACTCA
* * *
7951957 GTCCAGATAATTTCTTATAATTCATGGTTCCATCTCGATCATTTATTTTTGATCTGGACTCGATC
131 GTCCAGATAATTTCTTATAATTCATGGTTCCATCCCGATAATTTATTTTTGACCTGGACTCGATC
* * ** **
7952022 TTGATCGCTTTATTTTGACTTGTGATTTGGTCTCAGTCACCTGATCTTGGCTCAGTCCAGATCAT
196 CTGATCACTTTATTTTGACTTGTGATTTCATCTCAGTCACCTGATCTTACCTCAGTCCAGATCAT
* * * ** * *
7952087 TTCTTATGATTAGTGGTTTTGTTTTAATCATTCATTTTTTACCTCAACTCGGTCCTAGTCATTTT
261 TTCTTATGATTAGTAGTTTCGTTTCAATCATTCATTTTCGACCTCAACTCGATCCTAGTCATTAT
*
7952152 ATTTTGACTTATGGTTTCATCCTGGTCACCTA
326 ATTTTGAC-TATGATTTCATCCTGGTCACCTA
* * *
7952184 ATCTTGGCTCAGTCTAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTCATTTTTTACC
1 ATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCTGATCATTCATTTTTAACC
* * * * ** * **
7952249 TCGACTTAATCTTGATCGTTTTATTTTGACTTGTGATTTTGTCTTGATCATCTGATCTTGGCTCA
66 TCGACTCAATCCTGATCGTTTTATTTTGACTTATGATTTCGTCCCGATCACCTGATCTTAACTCA
* * ** *
7952314 GTCTAGATCATTTCTTA-ATATTTGTGGTTCCATCCCGATAATTTATTTTTGACCTTGACTCGAT
131 GTCCAGATAATTTCTTATA-ATTCATGGTTCCATCCCGATAATTTATTTTTGACCTGGACTCGAT
* ** * *
7952378 CCTGATCATTTTATTTTGACTTGTTG-TTTCATCTTGGTCACTTGATCTTACCTCAGTCTAGATC
195 CCTGATCACTTTATTTTGACTTG-TGATTTCATCTCAGTCACCTGATCTTACCTCAGTCCAGATC
* * * *
7952442 ATTTCTTATGATTCGTAGTTTCGTTTCGATCATTCATTTTCGACCTCGACTCGATCCTTGTCGA-
259 ATTTCTTATGATTAGTAGTTTCGTTTCAATCATTCATTTTCGACCTCAACTCGATCCTAGTC-AT
* * * * *
7952506 TATATTTTGACTGTGATTTTATCTTGGTCACTTG
323 TATATTTTGACTATGATTTCATCCTGGTCACCTA
* * * *
7952540 ATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGATTTTATTCTGATCATTTATTTTTAACC
1 ATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCTGATCATTCATTTTTAACC
*
7952605 TCGACTCGATCCT
66 TCGACTCAATCCT
7952618 AGTCGCTTCA
Statistics
Matches: 363, Mismatches: 68, Indels: 7
0.83 0.16 0.02
Matches are distributed among these distances:
356 86 0.24
357 274 0.75
358 3 0.01
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (356 bp):
ATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCTGATCATTCATTTTTAACC
TCGACTCAATCCTGATCGTTTTATTTTGACTTATGATTTCGTCCCGATCACCTGATCTTAACTCA
GTCCAGATAATTTCTTATAATTCATGGTTCCATCCCGATAATTTATTTTTGACCTGGACTCGATC
CTGATCACTTTATTTTGACTTGTGATTTCATCTCAGTCACCTGATCTTACCTCAGTCCAGATCAT
TTCTTATGATTAGTAGTTTCGTTTCAATCATTCATTTTCGACCTCAACTCGATCCTAGTCATTAT
ATTTTGACTATGATTTCATCCTGGTCACCTA
Found at i:7952894 original size:3 final size:3
Alignment explanation
Indices: 7952886--7952977 Score: 147
Period size: 3 Copynumber: 31.7 Consensus size: 3
7952876 TCAAATGCTT
7952886 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7952934 TTA TTA TT- TT- TTA TT- TTCA TTA -TA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
7952976 TT
1 TT
7952978 TTGTTCTTTT
Statistics
Matches: 85, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
2 8 0.09
3 75 0.88
4 2 0.02
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7954406 original size:41 final size:42
Alignment explanation
Indices: 7954361--7954444 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
7954351 AATTTTTTAT
7954361 ATAATCGTGATT-TTTATAA-ATAATAAATTATTTATATTCAA
1 ATAATCGTGATTATTTATAATATAAT-AATTATTTATATTCAA
* * * *
7954402 ATAATTGTGATTATTTTTAATATCATAATTATTTATGTTCAA
1 ATAATCGTGATTATTTATAATATAATAATTATTTATATTCAA
7954444 A
1 A
7954445 CATAATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.30
42 22 0.59
43 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (42 bp):
ATAATCGTGATTATTTATAATATAATAATTATTTATATTCAA
Found at i:7961171 original size:16 final size:16
Alignment explanation
Indices: 7961150--7961180 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7961140 AAAATTATTA
7961150 TTAAAAATAATAAAAT
1 TTAAAAATAATAAAAT
*
7961166 TTAAAATTAATAAAA
1 TTAAAAATAATAAAA
7961181 AAATTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TTAAAAATAATAAAAT
Found at i:7963610 original size:10 final size:10
Alignment explanation
Indices: 7963590--7963622 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7963580 ATTGAACCAA
7963590 TTATATATTT
1 TTATATATTT
7963600 TTAT-TAGTTT
1 TTATATA-TTT
7963610 TTATATATTT
1 TTATATATTT
7963620 TTA
1 TTA
7963623 AAATTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TTATATATTT
Found at i:7969827 original size:18 final size:18
Alignment explanation
Indices: 7969804--7969864 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
7969794 GTCGGTTTAG
7969804 ATTTTCTTAGCTTTCTTT
1 ATTTTCTTAGCTTTCTTT
* ** *
7969822 ATTTTCATCTCTGTATATTT
1 ATTTTCTTAGCT-T-TCTTT
7969842 -TTTTCTTAGCTTTCTTT
1 ATTTTCTTAGCTTTCTTT
7969859 ATTTTC
1 ATTTTC
7969865 AACTCTGTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 4 0.12
18 15 0.47
19 9 0.28
20 4 0.12
ACGTcount: A:0.13, C:0.16, G:0.05, T:0.66
Consensus pattern (18 bp):
ATTTTCTTAGCTTTCTTT
Found at i:7969851 original size:37 final size:37
Alignment explanation
Indices: 7969805--7969885 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
7969795 TCGGTTTAGA
*
7969805 TTTTCTTAGCTTTCTTTATTTTCATCTCTGTATATTT
1 TTTTCTTAGCTTTCTTTATTTTCAACTCTGTATATTT
7969842 TTTTCTTAGCTTTCTTTATTTTCAACTCTGTATATTT
1 TTTTCTTAGCTTTCTTTATTTTCAACTCTGTATATTT
7969879 TTTTCTT
1 TTTTCTT
7969886 TTTTCATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.14, C:0.16, G:0.05, T:0.65
Consensus pattern (37 bp):
TTTTCTTAGCTTTCTTTATTTTCAACTCTGTATATTT
Found at i:7975664 original size:3 final size:3
Alignment explanation
Indices: 7975656--7975690 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7975646 TGTTTGTAGC
7975656 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7975691 GATTAGCGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7976959 original size:12 final size:14
Alignment explanation
Indices: 7976944--7976976 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
7976934 TTAAGGTATT
7976944 TTTTATATAA-TA-
1 TTTTATATAATTAC
7976956 TTTTATATAATTAC
1 TTTTATATAATTAC
7976970 TTTTATA
1 TTTTATA
7976977 CTTACTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
13 2 0.11
14 7 0.37
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTATATAATTAC
Found at i:7978911 original size:20 final size:20
Alignment explanation
Indices: 7978886--7978926 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7978876 TTGTTGGGAG
*
7978886 TATATAAATTTATATGAATA
1 TATATAAATTTATATAAATA
* *
7978906 TATATAGATTTCTATAAATA
1 TATATAAATTTATATAAATA
7978926 T
1 T
7978927 GTGTATGGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (20 bp):
TATATAAATTTATATAAATA
Found at i:7982179 original size:22 final size:22
Alignment explanation
Indices: 7982137--7982193 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7982127 TATATTTTAA
**
7982137 AAATAATATTTTAT-TAATTTT
1 AAATAATATTAAATATAATTTT
7982158 AAATTAA-ATTAAATATAATTTT
1 AAA-TAATATTAAATATAATTTT
*
7982180 ATATAATATTAAAT
1 AAATAATATTAAAT
7982194 CAGATCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 11 0.37
22 19 0.63
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAATAATATTAAATATAATTTT
Found at i:7984887 original size:2 final size:2
Alignment explanation
Indices: 7984880--7984905 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7984870 CTCGAATTGG
7984880 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7984906 AAGGTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7984975 original size:21 final size:21
Alignment explanation
Indices: 7984951--7984991 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
7984941 AAAAAATATG
*
7984951 TTAAGATATAAAAGTTTGATA
1 TTAACATATAAAAGTTTGATA
7984972 TTAACATATAAAAGTTTGAT
1 TTAACATATAAAAGTTTGAT
7984992 TAGACTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.39
Consensus pattern (21 bp):
TTAACATATAAAAGTTTGATA
Found at i:7990422 original size:20 final size:20
Alignment explanation
Indices: 7990393--7990438 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7990383 ACCTAAAATT
7990393 TATAAAATATTATATTTAAA
1 TATAAAATATTATATTTAAA
* *
7990413 TATAATATATTATTTTTAAA
1 TATAAAATATTATATTTAAA
*
7990433 TGTAAA
1 TATAAA
7990439 GATAAAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TATAAAATATTATATTTAAA
Found at i:7990466 original size:9 final size:8
Alignment explanation
Indices: 7990452--7990507 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
7990442 AAAATTAAAT
7990452 AAATATAA
1 AAATATAA
7990460 AACATATAA
1 AA-ATATAA
7990469 AAATATAA
1 AAATATAA
* *
7990477 ATATAAAA
1 AAATATAA
7990485 TTAAATA-AA
1 --AAATATAA
7990494 AAATA-AA
1 AAATATAA
7990501 AAATATA
1 AAATATA
7990508 TATATTAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
7 12 0.29
8 15 0.37
9 10 0.24
10 4 0.10
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATATAA
Found at i:7990487 original size:39 final size:40
Alignment explanation
Indices: 7990430--7990507 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 40
7990420 TATTATTTTT
* * *
7990430 AAATGTAAAGATAAAATTAAAT-AAATATAAAACATATAA
1 AAATATAAAGATAAAATTAAATAAAAAATAAAAAATATAA
*
7990469 AAATATAAATATAAAATTAAATAAAAAATAAAAAATATA
1 AAATATAAAGATAAAATTAAATAAAAAATAAAAAATATA
7990508 TATATTAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 20 0.59
40 14 0.41
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.26
Consensus pattern (40 bp):
AAATATAAAGATAAAATTAAATAAAAAATAAAAAATATAA
Found at i:7990494 original size:23 final size:23
Alignment explanation
Indices: 7990448--7990500 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7990438 AGATAAAATT
*
7990448 AAATAAATATAAAACATATAAAA
1 AAATAAATATAAAACAAATAAAA
* *
7990471 ATATAAATATAAAATTAAAT-AAA
1 AAATAAATATAAAA-CAAATAAAA
7990494 AAATAAA
1 AAATAAA
7990501 AAATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
AAATAAATATAAAACAAATAAAA
Found at i:7991775 original size:20 final size:21
Alignment explanation
Indices: 7991739--7991790 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7991729 CCTAAAATTA
7991739 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
7991761 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
7991782 AT-AAATATT
1 ATAAAATATT
7991791 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:7991781 original size:21 final size:22
Alignment explanation
Indices: 7991739--7991790 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
7991729 CCTAAAATTA
7991739 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
7991761 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
7991782 AT-AAATATT
1 ATAAAATATT
7991791 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:7995773 original size:31 final size:30
Alignment explanation
Indices: 7995711--7995779 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
7995701 ATTTACATTC
* **
7995711 AAATATTTTATTACAATCAATTTAAGTTTT
1 AAATATTTTATTACAATCAATTAAAAATTT
* *
7995741 AAATTTTTTATTTCAAATCAATTAAAAATTT
1 AAATATTTTATTAC-AATCAATTAAAAATTT
*
7995772 AAACATTT
1 AAATATTT
7995780 AATTTCATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 12 0.39
31 19 0.61
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.48
Consensus pattern (30 bp):
AAATATTTTATTACAATCAATTAAAAATTT
Found at i:7997143 original size:3 final size:3
Alignment explanation
Indices: 7997135--7997180 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
7997125 ATATTTTTAA
*
7997135 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7997181 CCTTAACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7999807 original size:3 final size:3
Alignment explanation
Indices: 7999801--7999828 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7999791 GTTGTTAAGG
7999801 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7999829 TTGAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8002038 original size:16 final size:16
Alignment explanation
Indices: 8002005--8002038 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8001995 TGCGGATTTT
*
8002005 GATATCACTTGGCTCG
1 GATATCACTTGGCACG
*
8002021 GATATCACTTGTCACG
1 GATATCACTTGGCACG
8002037 GA
1 GA
8002039 CCGAAATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (16 bp):
GATATCACTTGGCACG
Found at i:8003094 original size:18 final size:18
Alignment explanation
Indices: 8003059--8003095 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8003049 TCATGATATA
*
8003059 AAAAACTGATCTGCGCGT
1 AAAAACTGATCTACGCGT
*
8003077 AAAAACTGATCTATGCGT
1 AAAAACTGATCTACGCGT
8003095 A
1 A
8003096 CGAACTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (18 bp):
AAAAACTGATCTACGCGT
Found at i:8004839 original size:23 final size:23
Alignment explanation
Indices: 8004813--8004856 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
8004803 GTGTAGGAGT
8004813 GTTGGAGGACAATGGTGATCTCA
1 GTTGGAGGACAATGGTGATCTCA
8004836 GTTGGAGGACAATGGTGATCT
1 GTTGGAGGACAATGGTGATCT
8004857 AGGCATCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.27
Consensus pattern (23 bp):
GTTGGAGGACAATGGTGATCTCA
Found at i:8005865 original size:15 final size:15
Alignment explanation
Indices: 8005845--8005895 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 15
8005835 TATATATATA
8005845 TATATTATTTAATTT
1 TATATTATTTAATTT
8005860 TATATT-TTTATATGTTT
1 TATATTATTTA-A--TTT
8005877 TATATTTATTTAATTT
1 TATA-TTATTTAATTT
8005893 TAT
1 TAT
8005896 CTTTATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
14 4 0.13
15 7 0.23
16 6 0.19
17 7 0.23
18 3 0.10
19 4 0.13
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TATATTATTTAATTT
Found at i:8013937 original size:52 final size:51
Alignment explanation
Indices: 8013793--8013938 Score: 168
Period size: 52 Copynumber: 2.8 Consensus size: 51
8013783 AAACTTTTCC
* * * * *
8013793 ATTAAAAATCTCTCTCCTCTTAAAATTCTTTTTCTGTAAGTCAAACTTACCT
1 ATTAAGAATCCCTTTCCTCTTAGAATTCTTTTT-TGCAAGTCAAACTTACCT
* * *
8013845 ATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGTCAAACTTACCT
1 ATTAAGAATCCCTTTCCTCTTAGAATTCTT-TTTTGCAAGTCAAACTTACCT
*
8013897 ATTAAGAATTCTCTTT-CTCTTAGAATTCTTATTTTGCAAGTC
1 ATTAAGAA-TCCCTTTCCTCTTAGAATTCTT-TTTTGCAAGTC
8013939 TTCTTGTCCA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
52 71 0.90
53 8 0.10
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (51 bp):
ATTAAGAATCCCTTTCCTCTTAGAATTCTTTTTTGCAAGTCAAACTTACCT
Found at i:8014298 original size:31 final size:31
Alignment explanation
Indices: 8014260--8014340 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
8014250 CCAAACCTTT
8014260 AGCTCTGATATCATTTGTTAGGGAACACCAC
1 AGCTCTGATATCATTTGTTAGGGAACACCAC
*
8014291 AGCTCTGATATCATTTGTTAGGGAACATCAC
1 AGCTCTGATATCATTTGTTAGGGAACACCAC
*
8014322 AGCTCTGATACCATTTGTT
1 AGCTCTGATATCATTTGTT
8014341 GGGCTAAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (31 bp):
AGCTCTGATATCATTTGTTAGGGAACACCAC
Done.