Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 31 of 117
Found at i:8014911 original size:52 final size:51
Alignment explanation
Indices: 8014852--8014981 Score: 156
Period size: 52 Copynumber: 2.5 Consensus size: 51
8014842 AATTACTCTC
8014852 CTCTTAGAATTATTTTTCTGTAAGTCAAACTTACTTATTAAGAATCCCT-TTT
1 CTCTTAGAATT-TTTTTCTGTAAGTCAAACTTACTTATTAAGAAT-CCTGTTT
* * * *
8014904 CTTTTAGAATTCTTCTCT-TACAAGTCAAACTTACTTATTAAGAATCTTGTTT
1 CTCTTAGAATTTTTTTCTGT--AAGTCAAACTTACTTATTAAGAATCCTGTTT
*
8014956 CTCTTAGAATTTTTATTTTGTAAGTC
1 CTCTTAGAATTTTT-TTCTGTAAGTC
8014982 TTTTTATCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
50 1 0.02
51 7 0.11
52 54 0.83
53 2 0.03
54 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (51 bp):
CTCTTAGAATTTTTTTCTGTAAGTCAAACTTACTTATTAAGAATCCTGTTT
Found at i:8015022 original size:11 final size:11
Alignment explanation
Indices: 8015006--8015047 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
8014996 GCAATATCTG
8015006 ACAAATCTCAA
1 ACAAATCTCAA
*
8015017 ACAAATCTCTA
1 ACAAATCTCAA
*
8015028 ATAAATCTCAA
1 ACAAATCTCAA
8015039 ACAAATCTC
1 ACAAATCTC
8015048 TTATGAGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:8015338 original size:31 final size:31
Alignment explanation
Indices: 8015303--8015386 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 31
8015293 TCAAACCTTT
* *
8015303 AGCTCTGATACCACTTGTTGGGGAACACCAC
1 AGCTCTGATATCATTTGTTGGGGAACACCAC
*
8015334 AGCTCTGATATCATTTGTTGGAGAACACCAC
1 AGCTCTGATATCATTTGTTGGGGAACACCAC
8015365 AGCTCTGATATCATTTGTTGGG
1 AGCTCTGATATCATTTGTTGGG
8015387 CTAAAAGCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (31 bp):
AGCTCTGATATCATTTGTTGGGGAACACCAC
Found at i:8016010 original size:52 final size:52
Alignment explanation
Indices: 8015868--8016012 Score: 168
Period size: 52 Copynumber: 2.8 Consensus size: 52
8015858 TATAACCATA
* * * * *
8015868 CAAACTTTCCCATTAAGAATC-TCTCTCTTCTTAAAATTCTTTTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCTTCTTTC-TCTTAAAATTCTTCTCCTGCAAGT
* * * *
8015920 CAAACTTACCTATTAAAAATCTAT-TTCCTTTTAAAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCT-TCTTTCTCTTAAAATTCTTCTCCTGCAAGT
*
8015972 CAAACTTACCTATTAAGAATCTTCTTTCTCTTAGAATTCTT
1 CAAACTTACCTATTAAGAATCTTCTTTCTCTTAAAATTCTT
8016013 ATTTTGTAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
51 1 0.01
52 73 0.95
53 2 0.03
54 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCTTCTTTCTCTTAAAATTCTTCTCCTGCAAGT
Found at i:8016065 original size:11 final size:11
Alignment explanation
Indices: 8016049--8016090 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
8016039 GCAATATCTG
8016049 ACAAATCTCAA
1 ACAAATCTCAA
*
8016060 ACAAATCTCTA
1 ACAAATCTCAA
*
8016071 ATAAATCTCAA
1 ACAAATCTCAA
8016082 ACAAATCTC
1 ACAAATCTC
8016091 TTATGAGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:8016381 original size:31 final size:31
Alignment explanation
Indices: 8016346--8016429 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
8016336 CCAAACCTTT
*
8016346 AGCTCTGATACCACTTGTTGGGGAACACCAC
1 AGCTCTGATACCATTTGTTGGGGAACACCAC
* * *
8016377 AGCTCTGATATCATTTGTTGGGTAACACCAT
1 AGCTCTGATACCATTTGTTGGGGAACACCAC
8016408 AGCTCTGATACCATTTGTTGGG
1 AGCTCTGATACCATTTGTTGGG
8016430 CTAAAAGCCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (31 bp):
AGCTCTGATACCATTTGTTGGGGAACACCAC
Found at i:8016978 original size:52 final size:53
Alignment explanation
Indices: 8016911--8017055 Score: 172
Period size: 52 Copynumber: 2.8 Consensus size: 53
8016901 TATAACCATA
* * * *
8016911 CAAACTTGCCCATTAAGAATCCTTCTCCTCTTAGAATTCTTTTTC-TGTAAGT
1 CAAACTTACCTATTAAGAATCCTTCTTCTCTTAGAATTCTTTCTCTTGTAAGT
*
8016963 CAAACTTACCTATTAAGAATCTCTT-TTCTTTTAGAATT-TTTCTCTTGTAAGT
1 CAAACTTACCTATTAAGAATC-CTTCTTCTCTTAGAATTCTTTCTCTTGTAAGT
* * *
8017015 CAAACTTATCTATTAAAAAT-TTTCTTTCTCTTAGAATTCTT
1 CAAACTTACCTATTAAGAATCCTTC-TTCTCTTAGAATTCTT
8017056 ATTTTACAAG
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
50 2 0.03
51 5 0.06
52 67 0.85
53 5 0.06
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46
Consensus pattern (53 bp):
CAAACTTACCTATTAAGAATCCTTCTTCTCTTAGAATTCTTTCTCTTGTAAGT
Found at i:8017108 original size:11 final size:11
Alignment explanation
Indices: 8017092--8017130 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
8017082 GTAATATCTG
8017092 ACAAATCTCAA
1 ACAAATCTCAA
*
8017103 ACAAATCTCTA
1 ACAAATCTCAA
*
8017114 ATAAATCTCAA
1 ACAAATCTCAA
8017125 ACAAAT
1 ACAAAT
8017131 TTCTTAGGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:8017420 original size:3 final size:3
Alignment explanation
Indices: 8017412--8017450 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
8017402 TTATAATTAA
*
8017412 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG GAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8017451 GTGACTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8023254 original size:14 final size:12
Alignment explanation
Indices: 8023209--8023250 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
8023199 TTGTATAGAA
*
8023209 AAAAGTATTGTAT
1 AAAA-TATTATAT
8023222 AAAATGATTATAT
1 AAAAT-ATTATAT
8023235 AAAATATTATAT
1 AAAATATTATAT
8023247 AAAA
1 AAAA
8023251 AATACCTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (12 bp):
AAAATATTATAT
Found at i:8023777 original size:2 final size:2
Alignment explanation
Indices: 8023770--8023795 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8023760 AGTTACTTTC
8023770 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8023796 CAAAGAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8024462 original size:3 final size:3
Alignment explanation
Indices: 8024454--8024500 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
8024444 CACTCTAATC
8024454 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8024501 GCTACAACCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8026850 original size:2 final size:2
Alignment explanation
Indices: 8026843--8026875 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8026833 GTTCATCAAT
8026843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8026876 GAAACAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8030364 original size:19 final size:20
Alignment explanation
Indices: 8030342--8030379 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8030332 TACTTCAATT
*
8030342 TTATTATT-TTTTCATTTTA
1 TTATTATTATTTTAATTTTA
8030361 TTATTATTATTTTAATTTT
1 TTATTATTATTTTAATTTT
8030380 TGAACAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTATTATTTTAATTTTA
Found at i:8030658 original size:5 final size:6
Alignment explanation
Indices: 8030642--8030668 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8030632 CAATCTATAT
8030642 GAAAAA GAAAAA GAAAAA GAAAAA GAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAA
8030669 GATTTTGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:8031260 original size:2 final size:2
Alignment explanation
Indices: 8031253--8031290 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
8031243 GATCAGTTCA
* *
8031253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8031291 TTGATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8031820 original size:2 final size:2
Alignment explanation
Indices: 8031802--8031842 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
8031792 CATTGGCACG
* * *
8031802 AT AT CT AT AT CT AT AT AT AT CT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8031843 ATCTTATCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8031822 original size:10 final size:10
Alignment explanation
Indices: 8031807--8031841 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
8031797 GCACGATATC
8031807 TATATCTATA
1 TATATCTATA
8031817 TATATCTATA
1 TATATCTATA
*
8031827 TATATATATA
1 TATATCTATA
8031837 TATAT
1 TATAT
8031842 AATCTTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (10 bp):
TATATCTATA
Found at i:8034354 original size:4 final size:4
Alignment explanation
Indices: 8034345--8034371 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8034335 TTCTATTATC
8034345 CCTG CCTG CCTG CCTG CCTG CCTG CCT
1 CCTG CCTG CCTG CCTG CCTG CCTG CCT
8034372 TCCTTCTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.22, T:0.26
Consensus pattern (4 bp):
CCTG
Found at i:8034737 original size:8 final size:7
Alignment explanation
Indices: 8034710--8034734 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8034700 AGATCATTAG
8034710 AATTAAA
1 AATTAAA
8034717 AATTAAA
1 AATTAAA
8034724 AATTAAA
1 AATTAAA
8034731 AATT
1 AATT
8034735 TAATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAA
Found at i:8035816 original size:2 final size:2
Alignment explanation
Indices: 8035809--8035849 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
8035799 GCAGGCAGGT
8035809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8035850 AAACAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8040057 original size:41 final size:38
Alignment explanation
Indices: 8040000--8040079 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 38
8039990 TTATTAAAAT
*
8040000 AATTATTTATTTATTTATATTTATTTATTTAAA-TAATA
1 AATTATTTATTTATTTATA-TTATTTAATTAAATTAATA
8040038 AATTATTTATATTTAATTTATATTATTTAATTAAATTAATA
1 AATTA-TT-TATTT-ATTTATATTATTTAATTAAATTAATA
8040079 A
1 A
8040080 GTTCATTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
38 5 0.14
39 2 0.05
40 17 0.46
41 13 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (38 bp):
AATTATTTATTTATTTATATTATTTAATTAAATTAATA
Found at i:8040064 original size:14 final size:14
Alignment explanation
Indices: 8039976--8040069 Score: 54
Period size: 14 Copynumber: 6.6 Consensus size: 14
8039966 AAAACTATTG
8039976 TATTTAATTTATATT
1 TATTTAATTTATA-T
*
8039991 TATTAAAATAATTAT-T
1 TATT-TAAT--TTATAT
8040007 TATTT-ATTTATATT
1 TATTTAATTTATA-T
*
8040021 TATTT-ATTTA-AA
1 TATTTAATTTATAT
* * *
8040033 TA-ATAAATTATTT
1 TATTTAATTTATAT
8040046 ATATTTAATTTATAT
1 -TATTTAATTTATAT
8040061 TATTTAATT
1 TATTTAATT
8040070 AAATTAATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 19
0.67 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 10 0.17
13 1 0.02
14 24 0.40
15 12 0.20
16 8 0.13
18 4 0.07
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTAATTTATAT
Found at i:8040223 original size:20 final size:21
Alignment explanation
Indices: 8040171--8040225 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
8040161 AATTATAATC
8040171 AAATAAATTTTAAATGAATATT
1 AAATAAATTTTAAA-GAATATT
*
8040193 AAACAAA-TTTAACA-AATA-T
1 AAATAAATTTTAA-AGAATATT
8040212 AAATAAATTTTAAA
1 AAATAAATTTTAAA
8040226 ATATAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 8 0.28
20 9 0.31
21 5 0.17
22 7 0.24
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
AAATAAATTTTAAAGAATATT
Found at i:8040324 original size:11 final size:11
Alignment explanation
Indices: 8040310--8040341 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8040300 AATAATAAAC
8040310 AAATAAATTTT
1 AAATAAATTTT
*
8040321 AAATAAATTAT
1 AAATAAATTTT
8040332 AAATAAATTT
1 AAATAAATTT
8040342 ATTCGTGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAATAAATTTT
Found at i:8041555 original size:15 final size:16
Alignment explanation
Indices: 8041535--8041576 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
8041525 AACATTTACT
8041535 AAATATAAAAAAGA-A
1 AAATATAAAAAAGAGA
* *
8041550 AAATATTAAATAGAGA
1 AAATATAAAAAAGAGA
8041566 AAATA-AAAAAA
1 AAATATAAAAAA
8041577 AAAGATAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (16 bp):
AAATATAAAAAAGAGA
Found at i:8046268 original size:26 final size:26
Alignment explanation
Indices: 8046211--8046269 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
8046201 ACAATTTTTG
8046211 AAAATAAATGTATGAGATGCATGAAC
1 AAAATAAATGTATGAGATGCATGAAC
* *
8046237 ATAATAACATGTGATGA-ATGCTTG-AC
1 AAAATAA-ATGT-ATGAGATGCATGAAC
8046263 AAAATAA
1 AAAATAA
8046270 TATGAATAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 14 0.50
27 10 0.36
28 4 0.14
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.25
Consensus pattern (26 bp):
AAAATAAATGTATGAGATGCATGAAC
Found at i:8046398 original size:14 final size:13
Alignment explanation
Indices: 8046379--8046506 Score: 74
Period size: 13 Copynumber: 10.2 Consensus size: 13
8046369 TGGGTCTAGG
8046379 TTAAGGTTAGGGAT
1 TTAAGGTTAGGG-T
8046393 TTAAGGTTTAGGGT
1 TTAAGG-TTAGGGT
* *
8046407 TTAAGGTTATGTT
1 TTAAGGTTAGGGT
* *
8046420 TTAGGGTTAAGGT
1 TTAAGGTTAGGGT
*
8046433 TTACGGTTA-GG-
1 TTAAGGTTAGGGT
8046444 TT----TTAGGGT
1 TTAAGGTTAGGGT
*
8046453 TTAAGTTTAGGG-
1 TTAAGGTTAGGGT
8046465 TTAAGGCTTA-GGT
1 TTAAGG-TTAGGGT
* * *
8046478 TAAAGGTTTGGAT
1 TTAAGGTTAGGGT
*
8046491 TTAGGGTTTAGGGT
1 TTAAGG-TTAGGGT
8046505 TT
1 TT
8046507 GGATTTAGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
7 3 0.03
8 2 0.02
9 2 0.02
11 2 0.02
12 11 0.12
13 43 0.48
14 20 0.22
15 6 0.07
ACGTcount: A:0.22, C:0.02, G:0.34, T:0.43
Consensus pattern (13 bp):
TTAAGGTTAGGGT
Found at i:8046407 original size:7 final size:7
Alignment explanation
Indices: 8046385--8046533 Score: 82
Period size: 7 Copynumber: 22.3 Consensus size: 7
8046375 TAGGTTAAGG
8046385 TTAGGGAT
1 TTAGGG-T
*
8046393 TTAAGGT
1 TTAGGGT
8046400 TTAGGGT
1 TTAGGGT
*
8046407 TTAAGG-
1 TTAGGGT
* *
8046413 TTATGTT
1 TTAGGGT
8046420 TTAGGG-
1 TTAGGGT
*
8046426 TTAAGGT
1 TTAGGGT
*
8046433 TTACGG-
1 TTAGGGT
*
8046439 TTAGGTT
1 TTAGGGT
8046446 TTAGGGT
1 TTAGGGT
*
8046453 TTA-AGT
1 TTAGGGT
8046459 TTAGGG-
1 TTAGGGT
* *
8046465 TTAAGGC
1 TTAGGGT
8046472 TTA-GGT
1 TTAGGGT
* *
8046478 TAAAGGT
1 TTAGGGT
*
8046485 TT-GGAT
1 TTAGGGT
8046491 TTAGGGT
1 TTAGGGT
8046498 TTAGGGT
1 TTAGGGT
*
8046505 TT-GGAT
1 TTAGGGT
*
8046511 TTAGGGC
1 TTAGGGT
8046518 TT-GGGAT
1 TTAGGG-T
8046525 TTAGGGT
1 TTAGGGT
8046532 TT
1 TT
8046534 GGACTTAAAG
Statistics
Matches: 106, Mismatches: 25, Indels: 21
0.70 0.16 0.14
Matches are distributed among these distances:
6 39 0.37
7 59 0.56
8 8 0.08
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:8046440 original size:26 final size:27
Alignment explanation
Indices: 8046379--8046467 Score: 101
Period size: 26 Copynumber: 3.3 Consensus size: 27
8046369 TGGGTCTAGG
* * *
8046379 TTAAGGTTAGGGATTTAAGGTTTAGGGT
1 TTAAGGTTA-GGTTTTAGGGTTTAAGGT
*
8046407 TTAAGGTTATGTTTTAGGG-TTAAGGT
1 TTAAGGTTAGGTTTTAGGGTTTAAGGT
*
8046433 TTACGGTTAGGTTTTAGGGTTTAA-GT
1 TTAAGGTTAGGTTTTAGGGTTTAAGGT
*
8046459 TTAGGGTTA
1 TTAAGGTTA
8046468 AGGCTTAGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 33 0.62
27 11 0.21
28 9 0.17
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.44
Consensus pattern (27 bp):
TTAAGGTTAGGTTTTAGGGTTTAAGGT
Found at i:8046475 original size:13 final size:13
Alignment explanation
Indices: 8046404--8046505 Score: 77
Period size: 13 Copynumber: 7.8 Consensus size: 13
8046394 TAAGGTTTAG
* *
8046404 GGTTTAAGGTTAT
1 GGTTTAGGGTTAA
*
8046417 GTTTTAGGGTTAA
1 GGTTTAGGGTTAA
*
8046430 GGTTTACGGTT-A
1 GGTTTAGGGTTAA
8046442 GGTTTTAGGGTTTAA
1 GG-TTTAGGG-TTAA
8046457 -GTTTAGGGTTAA
1 GGTTTAGGGTTAA
*
8046469 GGCTTA-GGTTAAA
1 GGTTTAGGGTT-AA
* *
8046482 GGTTT-GGATTTAG
1 GGTTTAGG-GTTAA
8046495 GGTTTAGGGTT
1 GGTTTAGGGTT
8046506 TGGATTTAGG
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
12 11 0.16
13 51 0.73
14 7 0.10
15 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (13 bp):
GGTTTAGGGTTAA
Found at i:8046513 original size:13 final size:13
Alignment explanation
Indices: 8046497--8046536 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
8046487 GGATTTAGGG
8046497 TTTAGGGTTTGGA
1 TTTAGGGTTTGGA
*
8046510 TTTAGGGCTTGGGA
1 TTTAGGG-TTTGGA
8046524 TTTAGGGTTTGGA
1 TTTAGGGTTTGGA
8046537 CTTAAAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.15, C:0.03, G:0.40, T:0.42
Consensus pattern (13 bp):
TTTAGGGTTTGGA
Found at i:8046548 original size:27 final size:27
Alignment explanation
Indices: 8046497--8046548 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8046487 GGATTTAGGG
* *
8046497 TTTAGGGTTTGGATTTAGGGCTTGGGA
1 TTTAGGGTTTGGATTAAAGGCTTGGGA
8046524 TTTAGGGTTTGGACTTAAAGG-TTGG
1 TTTAGGGTTTGGA-TTAAAGGCTTGG
8046549 ACTTAAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.17, C:0.04, G:0.38, T:0.40
Consensus pattern (27 bp):
TTTAGGGTTTGGATTAAAGGCTTGGGA
Found at i:8047911 original size:24 final size:26
Alignment explanation
Indices: 8047855--8047911 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 26
8047845 AAGCACCAAA
8047855 ATTTTTTCTCTCTCTTTTTTTTCCTC
1 ATTTTTTCTCTCTCTTTTTTTTCCTC
*
8047881 ACATTTTT-TCT-T-TTTTTTTTCCTC
1 A-TTTTTTCTCTCTCTTTTTTTTCCTC
8047905 TATTTTT
1 -ATTTTT
8047912 CACATTCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
24 16 0.59
25 2 0.07
26 4 0.15
27 5 0.19
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (26 bp):
ATTTTTTCTCTCTCTTTTTTTTCCTC
Found at i:8049302 original size:47 final size:47
Alignment explanation
Indices: 8049249--8049940 Score: 468
Period size: 47 Copynumber: 14.9 Consensus size: 47
8049239 TAAAAATGGT
* *
8049249 TCCTATAAAATCGGCATCAAACTTTAAAAAATTTATCTAGAAAGGGC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* * * * *
8049296 TCCTATAAAATAAGTATCAAACTTTAAAAAAAT-TGTTTGGAAA-GGC
1 TCCTATAAAATAGGCATCAAACTTT-AAAAAATCTATCTAGAAAGGGC
* * ***
8049342 TCTTAT-AAATAGGTATCAAACTTT-AAAAATCTATCTAGAAAACAC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* * * * * *
8049387 TCATATAAAATAGGCTTCAAACTTTAAAAATTTTATTTGGAAAGGGC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* *
8049434 TCCTATAAAATA---AGC--A---TAAAAAA-CTATCTGGAAAGGGC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* * * * *
8049472 TCATATAAAATAGGCACCAAACTTTAAAAAAATCTATTTGGAAATGGC
1 TCCTATAAAATAGGCATCAAACTTT-AAAAAATCTATCTAGAAAGGGC
* ** * *
8049520 TCCTATAAAATAGGCAT-AAACTTTAAAAAAAAATTTGCCTAAAAAAGGC
1 TCCTATAAAATAGGCATCAAACTTT---AAAAAATCTATCTAGAAAGGGC
* * * * * * *
8049569 TCTTATAAAATAGGCCTTAAACTTTAAAATATTTAT-TTGAAAAGGGT
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAG-AAAGGGC
* * * *
8049616 TCCTATAAAATAGGCCTTAAACTTTTAAAAAAATCTGTTTAGAAA-GGC
1 TCCTATAAAATAGGCATCAAAC-TTT-AAAAAATCTATCTAGAAAGGGC
* * * * *
8049664 TCCTAGAAAATAGGTATTAAAATTTAAAAAATCTATCTAGAAAGGAC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* * **
8049711 TCTTATAAAATAGGCATCAAACTTT-AAAAATCTATTTAGAAAAAGC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* * * * * * * * *
8049757 TTCTATAAAATAAGCATTAAGCTTTAAAAAATCTGTTTGGAAATGGT
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
** * * * * ***
8049804 TTATATAAAATAAGCATTAAACTTT-AAAAATGT-TCGAGAAAAAAC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
** * * * ***
8049849 TTATATAAAATAAGCATCAAACTTTAAATAATCTATCTAAAAAAAAC
1 TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
* *
8049896 TCCTATAAAATAGGCATCAGATTTTAAAAAAATCTATCTAGAAAG
1 TCCTATAAAATAGGCATCAAACTTT-AAAAAATCTATCTAGAAAG
8049941 AGTTGATCTA
Statistics
Matches: 512, Mismatches: 106, Indels: 53
0.76 0.16 0.08
Matches are distributed among these distances:
38 24 0.05
39 6 0.01
41 2 0.00
42 1 0.00
43 7 0.01
44 8 0.02
45 52 0.10
46 92 0.18
47 195 0.38
48 74 0.14
49 42 0.08
50 9 0.02
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (47 bp):
TCCTATAAAATAGGCATCAAACTTTAAAAAATCTATCTAGAAAGGGC
Found at i:8049690 original size:95 final size:94
Alignment explanation
Indices: 8049464--8049940 Score: 340
Period size: 92 Copynumber: 5.1 Consensus size: 94
8049454 AAACTATCTG
* ** * *
8049464 GAAAGGGCTCATATAAAATAGGCACCAAACTTTAAAAAAATCTATTTGGAAATGGCTCCTATAAA
1 GAAA-GGCTCCTATAAAATAGGCATTAAACTTT-AAAAAATCTATTTGAAAAGGGCTCCTATAAA
* * *
8049529 ATAGGCA-TAAACTTTAAAAAAAAATTTGCCTAA
64 ATAGGCATTAAACTTT--AAAAAAATCTG-TTTA
* * * * * *
8049562 AAAAGGCTCTTATAAAATAGGCCTTAAACTTTAAAATATTTATTTGAAAAGGGTTCCTATAAAAT
1 GAAAGGCTCCTATAAAATAGGCATTAAACTTTAAAAAATCTATTTGAAAAGGGCTCCTATAAAAT
*
8049627 AGGCCTTAAACTTTTAAAAAAATCTGTTTA
66 AGGCATTAAAC-TTTAAAAAAATCTGTTTA
* * * * * *
8049657 GAAAGGCTCCTAGAAAATAGGTATTAAAATTTAAAAAATCTATCT-AGAAAGGACTCTTATAAAA
1 GAAAGGCTCCTATAAAATAGGCATTAAACTTTAAAAAATCTATTTGA-AAAGGGCTCCTATAAAA
* *
8049721 TAGGCATCAAACTTT--AAAAATCTATTTA
65 TAGGCATTAAACTTTAAAAAAATCTGTTTA
* * * * * * * * **
8049749 GAAAAAGCTTCTATAAAATAAGCATTAAGCTTTAAAAAATCTGTTTGGAAATGGTTTATATAAAA
1 G-AAAGGCTCCTATAAAATAGGCATTAAACTTTAAAAAATCTATTTGAAAAGGGCTCCTATAAAA
* *
8049814 TAAGCATTAAACTTT--AAAAA--TGTTCGA
65 TAGGCATTAAACTTTAAAAAAATCTGTT-TA
** ** * * * * * ***
8049841 GAAAAAACTTATATAAAATAAGCATCAAACTTTAAATAATCTATCTAAAAAAAACTCCTATAAAA
1 G-AAAGGCTCCTATAAAATAGGCATTAAACTTTAAAAAATCTATTTGAAAAGGGCTCCTATAAAA
* * * * *
8049906 TAGGCATCAGATTTTAAAAAAATCTATCTA
65 TAGGCATTAAACTTTAAAAAAATCTGTTTA
8049936 GAAAG
1 GAAAG
8049941 AGTTGATCTA
Statistics
Matches: 298, Mismatches: 71, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
91 3 0.01
92 75 0.25
93 65 0.22
94 12 0.04
95 64 0.21
96 44 0.15
97 29 0.10
98 6 0.02
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (94 bp):
GAAAGGCTCCTATAAAATAGGCATTAAACTTTAAAAAATCTATTTGAAAAGGGCTCCTATAAAAT
AGGCATTAAACTTTAAAAAAATCTGTTTA
Found at i:8049903 original size:92 final size:93
Alignment explanation
Indices: 8049252--8049939 Score: 285
Period size: 92 Copynumber: 7.4 Consensus size: 93
8049242 AAATGGTTCC
* * * *** ** *
8049252 TATAAAATCGGCATCAAACTTTAAAAAATTTATCTAGAAAGGGCTCCTATAAAATAAGTATCAAA
1 TATAAAATAGGCATCAAACTTT-AAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCAAA
* * * * *
8049317 CTTTAAAAAAAT-TGT-TTGGAAAGGCTCT
65 CTTT-AAAAAATCTATCTAGAAAAGACTCA
* * * * * *
8049345 TAT-AAATAGGTATCAAACTTTAAAAATCTATCTAGAAAACACTCATATAAAATAGGCTTCAAAC
1 TATAAAATAGGCATCAAACTTTAAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCAAAC
* * * * * * *
8049409 TTTAAAAATTTTATTTGGAAAGGGCTCC
66 TTTAAAAAATCTATCTAGAAAAGACTCA
* *** * * *
8049437 TATAAAATAAGCAT---A----AAAAA-CTATCTG-GAAAGGGCTCATATAAAATAGGCACCAAA
1 TATAAAATAGGCATCAAACTTTAAAAATCTATC-GAGAAAAAACTTATATAAAATAAGCATCAAA
* * * * *
8049493 CTTTAAAAAAATCTATTTGGAAATGGCTCC
65 CTTT-AAAAAATCTATCTAGAAAAGACTCA
*** * ** * *
8049523 TATAAAATAGGCAT-AAACTTTAAAAAAAAATTTGCCTAAAAAAGGCTCT-TATAAAATAGGCCT
1 TATAAAATAGGCATCAAACTTTAAAAATCTA-TCG-AGAAAAAA--CT-TATATAAAATAAGCAT
* * * * ** *
8049586 TAAACTTTAAAATATTTAT-TTGAAAAGGGTTCC
61 CAAACTTTAAAAAATCTATCTAGAAAA-GACTCA
* * * ** ** ** * * * *
8049619 TATAAAATAGGCCTTAAACTTTTAAAAAAATCTGTTTAG-AAAGGCTCCTAGAAAATAGGTATTA
1 TATAAAATAGGCATCAAAC-TTT--AAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCA
* * *
8049683 AAATTTAAAAAATCTATCTAGAAAGGACTCT
63 AACTTTAAAAAATCTATCTAGAAAAGACTCA
** * * * *
8049714 TATAAAATAGGCATCAAACTTTAAAAATCTATTTAGAAAAAGCTTCTATAAAATAAGCATTAAGC
1 TATAAAATAGGCATCAAACTTTAAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCAAAC
* * * * ** *
8049779 TTTAAAAAATCTGTTTGGAAATGGTTTA
66 TTTAAAAAATCTATCTAGAAAAGACTCA
* * *
8049807 TATAAAATAAGCATTAAACTTTAAAAATGT-TCGAGAAAAAACTTATATAAAATAAGCATCAAAC
1 TATAAAATAGGCATCAAACTTTAAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCAAAC
* * * *
8049871 TTTAAATAATCTATCTAAAAAAAACTCC
66 TTTAAAAAATCTATCTAGAAAAGACTCA
* * *
8049899 TATAAAATAGGCATCAGATTTTAAAAAAATCTATCTAGAAA
1 TATAAAATAGGCATCAAACTTT--AAAAATCTATCGAGAAA
8049940 GAGTTGATCT
Statistics
Matches: 456, Mismatches: 110, Indels: 56
0.73 0.18 0.09
Matches are distributed among these distances:
85 33 0.07
86 40 0.09
88 1 0.00
90 7 0.02
91 40 0.09
92 109 0.24
93 81 0.18
94 11 0.02
95 64 0.14
96 32 0.07
97 28 0.06
98 3 0.01
99 2 0.00
100 5 0.01
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (93 bp):
TATAAAATAGGCATCAAACTTTAAAAATCTATCGAGAAAAAACTTATATAAAATAAGCATCAAAC
TTTAAAAAATCTATCTAGAAAAGACTCA
Found at i:8049966 original size:20 final size:19
Alignment explanation
Indices: 8049927--8049966 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8049917 TTTTAAAAAA
*
8049927 ATCTATCTAGAAAGAGTTG
1 ATCTATCTAGAAAAAGTTG
*
8049946 ATCTATCTTAGAAAAATTTG
1 ATCTATC-TAGAAAAAGTTG
8049966 A
1 A
8049967 AAAGTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
ATCTATCTAGAAAAAGTTG
Found at i:8051171 original size:8 final size:8
Alignment explanation
Indices: 8051158--8051197 Score: 53
Period size: 9 Copynumber: 4.6 Consensus size: 8
8051148 GATCCTTCTC
8051158 TTTTTTAT
1 TTTTTTAT
8051166 TTTTTTAT
1 TTTTTTAT
8051174 ATTTTTGTAT
1 -TTTTT-TAT
8051184 TTTTTTCAT
1 TTTTTT-AT
8051193 TTTTT
1 TTTTT
8051198 AAGCATAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 9 0.31
9 17 0.59
10 3 0.10
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTTTAT
Found at i:8051196 original size:18 final size:17
Alignment explanation
Indices: 8051158--8051198 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
8051148 GATCCTTCTC
8051158 TTTTTTATTTTTTTATA
1 TTTTTTATTTTTTTATA
*
8051175 TTTTTGTATTTTTTT-CA
1 TTTTT-TATTTTTTTATA
8051192 TTTTTTA
1 TTTTTTA
8051199 AGCATAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTTATTTTTTTATA
Found at i:8063565 original size:27 final size:21
Alignment explanation
Indices: 8063487--8063557 Score: 124
Period size: 21 Copynumber: 3.4 Consensus size: 21
8063477 ATAGGGAGCG
* *
8063487 GCCATGTAGAAACAAAGAACA
1 GCCATGCAGAAACAAGGAACA
8063508 GCCATGCAGAAACAAGGAACA
1 GCCATGCAGAAACAAGGAACA
8063529 GCCATGCAGAAACAAGGAACA
1 GCCATGCAGAAACAAGGAACA
8063550 GCCATGCA
1 GCCATGCA
8063558 TATGCAGATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.46, C:0.24, G:0.23, T:0.07
Consensus pattern (21 bp):
GCCATGCAGAAACAAGGAACA
Found at i:8065981 original size:123 final size:121
Alignment explanation
Indices: 8065616--8065984 Score: 408
Period size: 118 Copynumber: 3.0 Consensus size: 121
8065606 CATGCTCAGG
* * * * * *
8065616 TTGCACCTAGTAAC-ATAAAGAAAAATAGTTTCTAAATTAAAAATATGGTTTTCTTCCTTTCATG
1 TTGCACCTAGTAACGA-AAAAAAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATG
* * * *
8065680 TTCAGTTTGCACCTGTTAGTGTAAAAAAAAAGGTGGATTTCTTCCTTTTATGTTTGAT
65 TTCAGTTTGCACCTGTTAATGTAAAAAAAAAGGTGGCTTTCTTCCTTTAATG-TTGGT
* * ** * *
8065738 TTACACCCAGTAACG---AAAAAAAAAGTTAGTGGATTTAAAAGATGGTTTT-TTCATTTCAGGT
1 TTGCACCTAGTAACGAAAAAAAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGT
* * * * *
8065799 TCAGTTTGCACCTGTTAATGTCAAAAAGAAGGTGGCTTTCTTCATTTCATGTTCAGT
66 TCAGTTTGCACCTGTTAATGTAAAAAAAAAGGTGGCTTTCTTCCTTTAATGTT-GGT
* *
8065856 TTGCACCTAGTAACGTAAAAAAAAAAAAAGTTTTTGAATTTAAAAGATGGTTTTCTTCTTTTCAT
1 TTGCACCTAGTAACG--AAAAAAAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCAT
* * *
8065921 TTTTAGTTTGCACTTGTTAATGT-AAAAAAAAGGTGGCTTTCTTCCTTTAATGATTGGT
64 GTTCAGTTTGCACCTGTTAATGTAAAAAAAAAGGTGGCTTTCTTCCTTTAATG-TTGGT
8065979 TTGCAC
1 TTGCAC
8065985 TTGTTAGAGT
Statistics
Matches: 204, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
117 2 0.01
118 69 0.34
119 26 0.13
122 12 0.06
123 65 0.32
124 30 0.15
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (121 bp):
TTGCACCTAGTAACGAAAAAAAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGT
TCAGTTTGCACCTGTTAATGTAAAAAAAAAGGTGGCTTTCTTCCTTTAATGTTGGT
Found at i:8065997 original size:123 final size:120
Alignment explanation
Indices: 8065636--8066000 Score: 369
Period size: 123 Copynumber: 3.0 Consensus size: 120
8065626 TAACATAAAG
* * * * * *
8065636 AAAAATAGTTTCTAAATTAAAAATATGGTTTTCTTCCTTTCATGTTCAGTTTGCACCTGTTAGTG
1 AAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGTTCAGTTTGCACCTGTTAATG
* * * * ** **
8065701 TAAAAAAAAAGGTGGATTTCTTCCTTTTATGTTTGATTTACAC--CCAGTAACGAA
66 TAAAAAAAAAGGTGGCTTTCTTCCTTTAATG-TTGGTTTGCACTGTAAGTAAAAAA
** * *
8065755 AAAAAAAGTTAGTGGATTTAAAAGATGGTTTT-TTCATTTCAGGTTCAGTTTGCACCTGTTAATG
1 AAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGTTCAGTTTGCACCTGTTAATG
* * * * *
8065819 TCAAAAAGAAGGTGGCTTTCTTCATTTCATGTTCAGTTTGCACCTAGTAACGTAAAAAA
66 TAAAAAAAAAGGTGGCTTTCTTCCTTTAATGTT-GGTTTGCA-CT-GTAA-GTAAAAAA
* * * * *
8065878 AAAAAAAGTTTTTGAATTTAAAAGATGGTTTTCTTCTTTTCATTTTTAGTTTGCACTTGTTAATG
1 AAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGTTCAGTTTGCACCTGTTAATG
8065943 T-AAAAAAAAGGTGGCTTTCTTCCTTTAATGATTGGTTTGCACTTGTTAGAGTAAAAAA
66 TAAAAAAAAAGGTGGCTTTCTTCCTTTAATG-TTGGTTTGCAC-TG-TA-AGTAAAAAA
8066001 GAAGATGGCT
Statistics
Matches: 201, Mismatches: 34, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
117 2 0.01
118 60 0.30
119 26 0.13
122 3 0.01
123 79 0.39
124 31 0.15
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.39
Consensus pattern (120 bp):
AAAAAAAGTTTCTGAATTTAAAAGATGGTTTTCTTCATTTCATGTTCAGTTTGCACCTGTTAATG
TAAAAAAAAAGGTGGCTTTCTTCCTTTAATGTTGGTTTGCACTGTAAGTAAAAAA
Found at i:8067770 original size:3 final size:3
Alignment explanation
Indices: 8067755--8067799 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
8067745 TAATTTTTTC
* *
8067755 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8067800 CAACAACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8067908 original size:4 final size:4
Alignment explanation
Indices: 8067899--8067923 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8067889 TTTTATGCTT
8067899 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
8067924 TATTATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:8067929 original size:3 final size:3
Alignment explanation
Indices: 8067921--8067959 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8067911 TGTATGTATG
8067921 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8067960 GGGGTGCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8072741 original size:66 final size:66
Alignment explanation
Indices: 8072647--8072780 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
8072637 TAAATTTTGA
8072647 AACCAGTGGAAAGCCAAATGTCAATGAAAATCCTTTACCAAACCATGCTAGGATAGTAATCAATG
1 AACCAGTGGAAAGCCAAATGTCAATGAAAATCCTTTACCAAACCATGCTAGGATAGTAATCAATG
8072712 T
66 T
*
8072713 AACCAGTGGAAAGCCAAATGTCAATGAAAATCCTTTACCAAACCATGCTGGGATAGTAATCAATG
1 AACCAGTGGAAAGCCAAATGTCAATGAAAATCCTTTACCAAACCATGCTAGGATAGTAATCAATG
8072778 T
66 T
8072779 AA
1 AA
8072781 TAGATGATGG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.22
Consensus pattern (66 bp):
AACCAGTGGAAAGCCAAATGTCAATGAAAATCCTTTACCAAACCATGCTAGGATAGTAATCAATG
T
Found at i:8078513 original size:19 final size:19
Alignment explanation
Indices: 8078489--8078530 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
8078479 AGAATGAGAC
8078489 AAAAAAAAGAA-AAAAAGAT
1 AAAAAAAAGAATAAAAAG-T
8078508 AAAAAAAAGAATAAAAAGT
1 AAAAAAAAGAATAAAAAGT
8078527 AAAA
1 AAAA
8078531 GAGGACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (19 bp):
AAAAAAAAGAATAAAAAGT
Found at i:8079569 original size:29 final size:29
Alignment explanation
Indices: 8079523--8079587 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
8079513 TTTTTTAAAA
* *
8079523 TTTCAAAGCCTTTGTTTAGGGGGAGCCAT
1 TTTCAAAGCCTCTATTTAGGGGGAGCCAT
8079552 TTTCAAAGCCTCTATTTAGGGGGAGCCAT
1 TTTCAAAGCCTCTATTTAGGGGGAGCCAT
8079581 TTTCAAA
1 TTTCAAA
8079588 CAGGATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (29 bp):
TTTCAAAGCCTCTATTTAGGGGGAGCCAT
Found at i:8079634 original size:80 final size:81
Alignment explanation
Indices: 8079484--8079638 Score: 188
Period size: 80 Copynumber: 1.9 Consensus size: 81
8079474 AAGGCCCTTG
* * * ***
8079484 TTTAAGGGGAGCCATTTTCCAACTAGATTTTTTTTAAAATTTCAAAGCCTTTGTTTAGGGGGAGC
1 TTTAAGGGGAGCCATTTTCAAACTAGA-TTTTTTTAAAATTTCAAAACCTCTGTTTAAAAGGAGC
8079549 CATTTTCAAAGCCTCTA
65 CATTTTCAAAGCCTCTA
* * *
8079566 TTTAGGGGGAGCCATTTTCAAAC-AGGA-TTTTTTAAAGTTTCAAAACCTCTGTTTAAAAGGTGC
1 TTTAAGGGGAGCCATTTTCAAACTA-GATTTTTTTAAAATTTCAAAACCTCTGTTTAAAAGGAGC
*
8079629 TATTTTCAAA
65 CATTTTCAAA
8079639 TAAAATCCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 38 0.61
81 1 0.02
82 23 0.37
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (81 bp):
TTTAAGGGGAGCCATTTTCAAACTAGATTTTTTTAAAATTTCAAAACCTCTGTTTAAAAGGAGCC
ATTTTCAAAGCCTCTA
Found at i:8081719 original size:52 final size:51
Alignment explanation
Indices: 8081644--8081741 Score: 117
Period size: 52 Copynumber: 1.9 Consensus size: 51
8081634 TCAAGTTTGG
*
8081644 TTTGCACCTATTAGTGTAAAAAAAAAAGTGGCTTTCTT-TCTTTCATGATTTA
1 TTTGCACCTATTAGAGTAAAAAAAAAA-TGGCTTTCTTCT-TTTCATGATTTA
* ** **
8081696 TTTGCACCTGTTAGAGTTTAAAAAGGATGGCTTTCTTCTTTTCATG
1 TTTGCACCTATTAGAGTAAAAAAAAAATGGCTTTCTTCTTTTCATG
8081742 TTCGTTTTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
51 17 0.44
52 22 0.56
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (51 bp):
TTTGCACCTATTAGAGTAAAAAAAAAATGGCTTTCTTCTTTTCATGATTTA
Found at i:8082390 original size:2 final size:2
Alignment explanation
Indices: 8082383--8082410 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8082373 ATAGTAAGTA
8082383 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8082411 TGGAAGCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8085157 original size:25 final size:25
Alignment explanation
Indices: 8085131--8085190 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
8085121 GAACAACAAT
*
8085131 ATAT-AAT-AAATGACATGATTAAA
1 ATATGAATGAAATGACATAATTAAA
*
8085154 ATATGCATGAAATGACATAATTAAA
1 ATATGAATGAAATGACATAATTAAA
*
8085179 ATATGCATGAAA
1 ATATGAATGAAA
8085191 AGTAAAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 4 0.12
24 2 0.06
25 27 0.82
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (25 bp):
ATATGAATGAAATGACATAATTAAA
Found at i:8086314 original size:19 final size:20
Alignment explanation
Indices: 8086280--8086327 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
8086270 CTTTAAGTTG
* *
8086280 TAGGGTTAAGATTTAG-GAT
1 TAGGGTTTAGAATTAGAGAT
*
8086299 TAGGGTTTAGAATTAGAGTT
1 TAGGGTTTAGAATTAGAGAT
8086319 TA-GGTTTAG
1 TAGGGTTTAG
8086328 GGTTAGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (20 bp):
TAGGGTTTAGAATTAGAGAT
Found at i:8086327 original size:32 final size:32
Alignment explanation
Indices: 8086291--8086354 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
8086281 AGGGTTAAGA
8086291 TTTAGGATTAGGGTTTAGAATTAGAGTTTAGG
1 TTTAGGATTAGGGTTTAGAATTAGAGTTTAGG
* * * *
8086323 TTTAGGGTTAGGGTTTGGATTTATAGTTTAGG
1 TTTAGGATTAGGGTTTAGAATTAGAGTTTAGG
8086355 GTTTGATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (32 bp):
TTTAGGATTAGGGTTTAGAATTAGAGTTTAGG
Found at i:8086338 original size:13 final size:13
Alignment explanation
Indices: 8086291--8086331 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8086281 AGGGTTAAGA
8086291 TTTAGGATTAGGG
1 TTTAGGATTAGGG
* *
8086304 TTTAGAATTAGAG
1 TTTAGGATTAGGG
*
8086317 TTTAGGTTTAGGG
1 TTTAGGATTAGGG
8086330 TT
1 TT
8086332 AGGGTTTGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (13 bp):
TTTAGGATTAGGG
Found at i:8087637 original size:19 final size:18
Alignment explanation
Indices: 8087609--8087644 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
8087599 TCAAACAAGA
*
8087609 GATGAATGAAATATGAAC
1 GATGAATGAAAAATGAAC
8087627 GATGCAATGAAAAATGAA
1 GATG-AATGAAAAATGAA
8087645 TAAATATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.19
Consensus pattern (18 bp):
GATGAATGAAAAATGAAC
Found at i:8087733 original size:15 final size:14
Alignment explanation
Indices: 8087708--8087759 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 14
8087698 AGCACCAAAA
8087708 TTTTTTCTTCCTATCC
1 TTTTTT-TTCC-ATCC
8087724 TTTTTTTTCC-TCAC
1 TTTTTTTTCCATC-C
*
8087738 -GTTTTTTCCATCC
1 TTTTTTTTCCATCC
8087751 TTTTTTTTC
1 TTTTTTTTC
8087760 TGTTCGTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 11 0.35
14 10 0.32
15 4 0.13
16 6 0.19
ACGTcount: A:0.06, C:0.27, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTTTTTTCCATCC
Found at i:8089992 original size:14 final size:13
Alignment explanation
Indices: 8089944--8090013 Score: 50
Period size: 14 Copynumber: 4.8 Consensus size: 13
8089934 TTTGAAAGGT
8089944 TTTGATTTTAGGA
1 TTTGATTTTAGGA
8089957 TCTTGATATTTTAAGGA
1 T-TTG--ATTTT-AGGA
*
8089974 TTTGATTTTAGGG
1 TTTGATTTTAGGA
* *
8089987 TCTTGAGGTTTAGGG
1 T-TTGA-TTTTAGGA
8090002 TTTGGATTTTAG
1 TTT-GATTTTAG
8090014 AGTTTAAAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
13 5 0.11
14 19 0.40
15 10 0.21
16 8 0.17
17 5 0.11
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (13 bp):
TTTGATTTTAGGA
Found at i:8090010 original size:29 final size:30
Alignment explanation
Indices: 8089939--8090013 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
8089929 TAAGGTTTGA
* *
8089939 AAGGTTTTGATTTTAGGATCTTGATATTTT
1 AAGGGTTTGATTTTAGGATCTTGATAGTTT
* * *
8089969 AAGGATTTGATTTTAGGGTCTTGA-GGTTT
1 AAGGGTTTGATTTTAGGATCTTGATAGTTT
8089998 -AGGGTTTGGATTTTAG
1 AAGGGTTT-GATTTTAG
8090014 AGTTTAAAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 6 0.15
29 11 0.28
30 22 0.56
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.48
Consensus pattern (30 bp):
AAGGGTTTGATTTTAGGATCTTGATAGTTT
Found at i:8091436 original size:12 final size:13
Alignment explanation
Indices: 8091409--8091441 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8091399 TTATATTTAA
*
8091409 TTTAATTAGTTTT
1 TTTAATTAGATTT
8091422 TTTAATTA-ATTT
1 TTTAATTAGATTT
8091434 TTTAATTA
1 TTTAATTA
8091442 TAATTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (13 bp):
TTTAATTAGATTT
Found at i:8091481 original size:20 final size:19
Alignment explanation
Indices: 8091458--8091495 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
8091448 AACCAATATT
8091458 ATTATTATTATTTAAAAAAA
1 ATTATTATTA-TTAAAAAAA
8091478 ATTATTATTATTAAAAAA
1 ATTATTATTATTAAAAAA
8091496 TGTAGACCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTATTATTATTAAAAAAA
Found at i:8102473 original size:31 final size:31
Alignment explanation
Indices: 8102426--8102493 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
8102416 TATTTTTAAA
* * *
8102426 AATTTA-CTCATAAATGAGGTGTTATCATTT
1 AATTTATCTCATAAATGAGGTGTCATAATCT
* *
8102456 AATTTATCTCATTAATGAGTTGTCATAATCT
1 AATTTATCTCATAAATGAGGTGTCATAATCT
8102487 AATTTAT
1 AATTTAT
8102494 TAATAATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (31 bp):
AATTTATCTCATAAATGAGGTGTCATAATCT
Found at i:8103148 original size:160 final size:160
Alignment explanation
Indices: 8102935--8103239 Score: 420
Period size: 160 Copynumber: 1.9 Consensus size: 160
8102925 GAAGCAAAAA
* * *
8102935 TTTTGGATTTTTATGTTTTTTTTTATTGCTTATCTTTGCTTAGTACATAACAAAATAAAAAACAT
1 TTTTGGATTTTTATGTTTTTTTTTACTGCTTAGCTTTGCTTAGCACATAACAAAATAAAAAACAT
* * *
8103000 TGTTGTTTGGGATTGGTTGGTTCTTAG-G-CGTAACT-AATAAAGTTTTTGATGAATTATTTGTG
66 TGTTGTTTGGGATTGGATGGTTCTTAGAGAC-TAACTGAATAAAGTGTTTGATAAATTATTTGTG
*
8103062 AAAATGTTTCATTTTTCTTTGACTATATTCG
130 AAAATATTTCATTTTTCTTTGACTATATTCG
* * *
8103093 TTTTGGATTTCTT-TTTTTGTTTTTCTACTGCTTAGCTTTGCTTAGCACGTAACAAAATAAAGAA
1 TTTTGGATTT-TTATGTTT-TTTTT-TACTGCTTAGCTTTGCTTAGCACATAACAAAATAAAAAA
* * *
8103157 CATTGTTGTTTGGGATTGGATGGTTCTTAGAGACTTATTGAATAGAGTGTTTGATAAATTATTTG
63 CATTGTTGTTTGGGATTGGATGGTTCTTAGAGACTAACTGAATAAAGTGTTTGATAAATTATTTG
*
8103222 TGAAAATATTTGATTTTT
128 TGAAAATATTTCATTTTT
8103240 TAATTTTTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
158 14 0.11
159 7 0.06
160 63 0.50
161 4 0.03
162 39 0.31
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (160 bp):
TTTTGGATTTTTATGTTTTTTTTTACTGCTTAGCTTTGCTTAGCACATAACAAAATAAAAAACAT
TGTTGTTTGGGATTGGATGGTTCTTAGAGACTAACTGAATAAAGTGTTTGATAAATTATTTGTGA
AAATATTTCATTTTTCTTTGACTATATTCG
Found at i:8103491 original size:26 final size:25
Alignment explanation
Indices: 8103455--8103504 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
8103445 GAATTTAAAT
* *
8103455 TTAAATTTGAGTATACATAATCAAAC
1 TTAAAATTGAGTATA-AAAATCAAAC
8103481 TTAAAATTGAGTATAAAAATCAAA
1 TTAAAATTGAGTATAAAAATCAAA
8103505 TTTGTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (25 bp):
TTAAAATTGAGTATAAAAATCAAAC
Found at i:8105649 original size:23 final size:21
Alignment explanation
Indices: 8105623--8105665 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
8105613 AGCTAGTCAG
*
8105623 GGGGCTGGTCAGGAGGCTGACAA
1 GGGGCTGGACA-GAGGC-GACAA
8105646 GGGGCTGGACAGAGGCGACA
1 GGGGCTGGACAGAGGCGACA
8105666 GCGACGTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 5 0.26
23 10 0.53
ACGTcount: A:0.23, C:0.19, G:0.49, T:0.09
Consensus pattern (21 bp):
GGGGCTGGACAGAGGCGACAA
Found at i:8105749 original size:20 final size:20
Alignment explanation
Indices: 8105712--8105755 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
8105702 CTCTTTTTTT
8105712 TTTTTTTAATTAATAATA-A
1 TTTTTTTAATTAATAATATA
*
8105731 TTTTTTTAATTATTAAATATA
1 TTTTTTTAATTAAT-AATATA
8105752 TTTT
1 TTTT
8105756 AAATATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.59
20 4 0.18
21 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTTTAATTAATAATATA
Found at i:8105771 original size:3 final size:3
Alignment explanation
Indices: 8105759--8105787 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8105749 ATATTTTAAA
8105759 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8105788 ACTAAAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:8106342 original size:102 final size:102
Alignment explanation
Indices: 8106220--8106420 Score: 282
Period size: 102 Copynumber: 2.0 Consensus size: 102
8106210 CGAGTCGGAT
* * * * * * *
8106220 GATAACAACAATTGAGATTAAACTGTGACTTTGAATTAAAGAGATC-AGGATTGAATCGTGAATC
1 GATAACAACAATCGAAATTAAACTATGACTTTAAATTAAAAAGATCGA-GATTGAACCGCGAATC
8106284 GAAGAATAAAAAGATC-GAGATTAAA-CTGCGAGTCAAAG
65 GAAGAATAAAAAGATCAG-GATTAAATC-GCGAGTCAAAG
*
8106322 GATAACAACAATCGAAATTAAACTATGATTTTAAATTAAAAAGATCGAGATTGAACCGCGAATCG
1 GATAACAACAATCGAAATTAAACTATGACTTTAAATTAAAAAGATCGAGATTGAACCGCGAATCG
8106387 AAGAATAAAAAGATCAGGATTAAATCGCGAGTCA
66 AAGAATAAAAAGATCAGGATTAAATCGCGAGTCA
8106421 GAAAATGACG
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
102 85 0.97
103 3 0.03
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (102 bp):
GATAACAACAATCGAAATTAAACTATGACTTTAAATTAAAAAGATCGAGATTGAACCGCGAATCG
AAGAATAAAAAGATCAGGATTAAATCGCGAGTCAAAG
Found at i:8106396 original size:34 final size:34
Alignment explanation
Indices: 8106279--8106416 Score: 102
Period size: 34 Copynumber: 4.1 Consensus size: 34
8106269 ATTGAATCGT
*
8106279 GAATCGAAGAATAAAAAGATCGAGATTAAACTGC
1 GAATCGAAGAATAAAAAGATCGAGATTAAACCGC
* * * * ***
8106313 GAGTCAAAGGATAACAACA-ATCGAAATTAAACTAT
1 GAATCGAAGAATAA-AA-AGATCGAGATTAAACCGC
* ** * *
8106348 GATTTTAA-ATTAAAAAGATCGAGATTGAACCGC
1 GAATCGAAGAATAAAAAGATCGAGATTAAACCGC
*
8106381 GAATCGAAGAATAAAAAGATC-AGGATTAAATCGC
1 GAATCGAAGAATAAAAAGATCGA-GATTAAACCGC
8106415 GA
1 GA
8106417 GTCAGAAAAT
Statistics
Matches: 77, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
32 1 0.01
33 19 0.25
34 36 0.47
35 20 0.26
36 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (34 bp):
GAATCGAAGAATAAAAAGATCGAGATTAAACCGC
Found at i:8106616 original size:38 final size:38
Alignment explanation
Indices: 8106574--8107196 Score: 159
Period size: 38 Copynumber: 17.1 Consensus size: 38
8106564 AAGATTAAAG
* *
8106574 ATGACTGGGACTAAACCGTAAGTTAGAGAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* * ** * * *
8106612 ATGACCGGGATTAAACCACGAGCCAAAG-GTTAA--AA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* * * *
8106647 ATGACTGTGACTGAACCGTAAGTCAGAAAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
** * * * * *
8106685 ATGACCAGGATTAAACCATGAGCCA-AAAATTAA--AG
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
8106720 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* * ** * * * *
8106758 ATGA-TCGGGATTAAATCACGAGCCAAAG-GTTAA--AG
1 ATGACT-GGGACTAAACCATAAGTCAGAGAATTAATGAA
** * *
8106793 ATGACTTTGACTGAACCACAAGTCAGAGAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* *** * * *
8106831 ATGA-TCGGGATTAAACTGCAAGCCAAAG-ATTAA--AG
1 ATGACT-GGGACTAAACCATAAGTCAGAGAATTAATGAA
* * *
8106866 ATGATTGGGACTGAACCACAAGTCAG-GAAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAG-AATTAATGAA
* * * * * *
8106904 ATGA-TCGGGATTAAATC--GAGCCAAAG-ATTAA--AG
1 ATGACT-GGGACTAAACCATAAGTCAGAGAATTAATGAA
* ** * *
8106937 ATGACT-GGACTGAACCGCAAGTCGGGGAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* * * * * *
8106974 ATGAGC-GGGATTAAATCGA-GAGCCA-ATG-GTTAA--AG
1 ATGA-CTGGGACTAAA-CCATAAGTCAGA-GAATTAATGAA
* * *
8107009 ATGACTGGAACTGAACCGTAAGTCAG-GAAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAG-AATTAATGAA
* ** * * * *
8107047 ATGACTGGGATTAAACCGCAAGCCAAAG-GTTAA--AG
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* *
8107082 ATGACT-GGACTGAACCGTAAGTCAG-GAAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAG-AATTAATGAA
* ** * * * *
8107119 ATGACTGGGATTAAACCGCAAGCCAAAG-GTTAA--AG
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
* * * **
8107154 ATGACTGGGATTGAATCGCAAGTCAGAGAATTAATGAA
1 ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
8107192 ATGAC
1 ATGAC
8107197 CAAGATTGAA
Statistics
Matches: 406, Mismatches: 133, Indels: 92
0.64 0.21 0.15
Matches are distributed among these distances:
32 7 0.02
33 6 0.01
34 23 0.06
35 140 0.34
36 34 0.08
37 49 0.12
38 144 0.35
39 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (38 bp):
ATGACTGGGACTAAACCATAAGTCAGAGAATTAATGAA
Found at i:8106870 original size:35 final size:34
Alignment explanation
Indices: 8106831--8106940 Score: 89
Period size: 35 Copynumber: 3.1 Consensus size: 34
8106821 AATTAATGAA
8106831 ATGATCGGGATTAAACTGCAAGCCAAAGATTAAAG
1 ATGATCGGGATTAAACT-CAAGCCAAAGATTAAAG
* * * * * *
8106866 ATGATTGGGACTGAACCACAAGTCAGGAA-ATTAATGAA
1 ATGATCGGGA-TTAAACTCAAGCCA--AAGATTAA--AG
*
8106904 ATGATCGGGATTAAA-TCGAGCCAAAGATTAAAG
1 ATGATCGGGATTAAACTCAAGCCAAAGATTAAAG
8106937 ATGA
1 ATGA
8106941 CTGGACTGAA
Statistics
Matches: 56, Mismatches: 13, Indels: 14
0.67 0.16 0.17
Matches are distributed among these distances:
33 5 0.09
34 2 0.04
35 20 0.36
36 14 0.25
37 5 0.09
38 10 0.18
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.21
Consensus pattern (34 bp):
ATGATCGGGATTAAACTCAAGCCAAAGATTAAAG
Found at i:8107161 original size:35 final size:35
Alignment explanation
Indices: 8106994--8107316 Score: 161
Period size: 35 Copynumber: 8.9 Consensus size: 35
8106984 TTAAATCGAG
* * * *
8106994 AGCCAATGGTTAAAGATGACTGGAACTGAACCGTA
1 AGCCAAAGGTTAAAGATGACTGGGATTGAACCGCA
* * * *
8107029 AGTCAGGAA-ATTAATGAAATGACTGGGATTAAACCGCA
1 AGCCA--AAGGTTAA--AGATGACTGGGATTGAACCGCA
* *
8107067 AGCCAAAGGTTAAAGATGACT-GGACTGAACCGTA
1 AGCCAAAGGTTAAAGATGACTGGGATTGAACCGCA
* * * *
8107101 AGTCAGGAA-ATTAATGAAATGACTGGGATTAAACCGCA
1 AGCCA--AAGGTTAA--AGATGACTGGGATTGAACCGCA
*
8107139 AGCCAAAGGTTAAAGATGACTGGGATTGAATCGCA
1 AGCCAAAGGTTAAAGATGACTGGGATTGAACCGCA
* * * * *** ** *
8107174 AGTCAGAGAATTAATGAAATGACCAAGATTGAACTACG
1 AGCCAAAG-GTTAA--AGATGACTGGGATTGAACCGCA
*
8107212 AGCCAAAGGTTAAAGATGACTGGGATTGAACCGTA
1 AGCCAAAGGTTAAAGATGACTGGGATTGAACCGCA
* * *** ** *
8107247 AGTC--AGGAATTAATGAAATGACCAAGATTGAACAACG
1 AGCCAAAGG--TTAA--AGATGACTGGGATTGAACCGCA
*
8107284 AGCCAAAGGTTAAAGATGACTGGGAATGAACCG
1 AGCCAAAGGTTAAAGATGACTGGGATTGAACCG
8107317 TAAGTCGGGA
Statistics
Matches: 204, Mismatches: 64, Indels: 40
0.66 0.21 0.13
Matches are distributed among these distances:
33 3 0.01
34 14 0.07
35 74 0.36
36 14 0.07
37 41 0.20
38 55 0.27
39 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.20
Consensus pattern (35 bp):
AGCCAAAGGTTAAAGATGACTGGGATTGAACCGCA
Found at i:8107526 original size:35 final size:35
Alignment explanation
Indices: 8107427--8107532 Score: 113
Period size: 35 Copynumber: 2.9 Consensus size: 35
8107417 GATTAAACCG
** *
8107427 AAAGATTAAAGATGACTGGGACTAAACCGTAAGTC
1 AAAGATTAAAGATGACTGGGACTAAACCACAAGCC
* * * * *
8107462 AGAGAATTAATGAAATGACTAGGATTAAACCACGAGCC
1 AAAG-ATTAA--AGATGACTGGGACTAAACCACAAGCC
8107500 AAAGATTAAAGATGACTGGGACTAAACCACAAG
1 AAAGATTAAAGATGACTGGGACTAAACCACAAG
8107533 TTAGGAAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
35 23 0.42
36 5 0.09
37 5 0.09
38 22 0.40
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (35 bp):
AAAGATTAAAGATGACTGGGACTAAACCACAAGCC
Found at i:8107681 original size:73 final size:73
Alignment explanation
Indices: 8106521--8107680 Score: 1310
Period size: 73 Copynumber: 16.1 Consensus size: 73
8106511 TTAAACCACG
* * * ** *
8106521 AGTCAGGGAATTAATGAAATGATCCGGATTAAACTATGAGTAAAAGATTAAAGATGACTGGGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
*
8106586 AAACCGTA
66 GAACCGTA
* * * * *
8106594 AGTTAGAGAATTAATGAAATGACCGGGATTAAACCACGAGCCAAAGGTTAAAAATGACTGTGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
8106659 GAACCGTA
66 GAACCGTA
** * * * **
8106667 AGTCAGAAAATTAATGAAATGACCAGGATTAAACCATGAGCCAAAAATTAAAGATGACTGGGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
* *
8106732 AAACCATA
66 GAACCGTA
* * **
8106740 AGTCAGAGAATTAATGAAATGATCGGGATTAAATCACGAGCCAAAGGTTAAAGATGACTTTGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
**
8106805 GAACCACA
66 GAACCGTA
* ** * * *
8106813 AGTCAGAGAATTAATGAAATGATCGGGATTAAACTGCAAGCCAAAGATTAAAGATGATTGGGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
**
8106878 GAACCACA
66 GAACCGTA
* * *
8106886 AGTCAGGAAATTAATGAAATGATCGGGATTAAA--TCGAGCCAAAGATTAAAGATGACT-GGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
*
8106948 GAACCGCA
66 GAACCGTA
* * * * *
8106956 AGTCGGGGAATTAATGAAATGAGCGGGATTAAATCGA-GAGCCAATGGTTAAAGATGACTGGAAC
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAA-CCACGAGCCAAAGGTTAAAGATGACTGGGAC
8107020 TGAACCGTA
65 TGAACCGTA
* * *
8107029 AGTCAGGAAATTAATGAAATGA-CTGGGATTAAACCGCAAGCCAAAGGTTAAAGATGACT-GGAC
1 AGTCAGGGAATTAATGAAATGATC-GGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGAC
8107092 TGAACCGTA
65 TGAACCGTA
* * * *
8107101 AGTCAGGAAATTAATGAAATGA-CTGGGATTAAACCGCAAGCCAAAGGTTAAAGATGACTGGGAT
1 AGTCAGGGAATTAATGAAATGATC-GGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGAC
* *
8107165 TGAATCGCA
65 TGAACCGTA
* * ** * * *
8107174 AGTCAGAGAATTAATGAAATGACCAAGATTGAACTACGAGCCAAAGGTTAAAGATGACTGGGATT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
8107239 GAACCGTA
66 GAACCGTA
* ** * * *
8107247 AGTCA-GGAATTAATGAAATGACCAAGATTGAACAACGAGCCAAAGGTTAAAGATGACTGGGAAT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
8107311 GAACCGTA
66 GAACCGTA
* * * * *
8107319 AGTC-GGGAATTAATGAAATTACCAGGATTAAACCGCGAGCCAAAGATTAAAGATGACTGAGGAC
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTG-GGAC
*
8107383 TGAACCGCA
65 TGAACCGTA
* * *
8107392 AGTCAGAGAATTAATGAAATGA-CCGGATTAAA-C-C--G--AAAGATTAAAGATGACTGGGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
*
8107450 AAACCGTA
66 GAACCGTA
* * *
8107458 AGTCAGAGAATTAATGAAATGA-CTAGGATTAAACCACGAGCCAAAGATTAAAGATGACTGGGAC
1 AGTCAGGGAATTAATGAAATGATC-GGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGAC
* **
8107522 TAAACCACA
65 TGAACCGTA
* * * * ** *
8107531 AGTTAGGAAATTAATGAAATAATCAGGATTAAACTGCGAGCCAAAGGTTAAAGATGATTGGGACT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
8107596 GAACCGTA
66 GAACCGTA
* * * *
8107604 AGTCGGGGAATTAATGAAATGATCGGGATTCAATCACGAGCCAAAGGTTAAAGATGACTGGGATT
1 AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
*
8107669 GAACTGTA
66 GAACCGTA
8107677 AGTC
1 AGTC
8107681 GAGGAACTAT
Statistics
Matches: 951, Mismatches: 117, Indels: 38
0.86 0.11 0.03
Matches are distributed among these distances:
66 34 0.04
67 26 0.03
68 1 0.00
69 2 0.00
70 42 0.04
71 23 0.02
72 210 0.22
73 596 0.63
74 17 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (73 bp):
AGTCAGGGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGGTTAAAGATGACTGGGACT
GAACCGTA
Found at i:8118253 original size:341 final size:341
Alignment explanation
Indices: 8117620--8118300 Score: 1157
Period size: 341 Copynumber: 2.0 Consensus size: 341
8117610 AAATAGTTGG
* *
8117620 TGAAGGGTTTATACCTTTATCTAATTGCTCAAAGAAATCAACCACTAATGCTTTTATATGTCCTA
1 TGAAAGGTTTATACCTTTATCTAATTGCTCAAAGAAATCAACCACTAATGCTTCTATATGTCCTA
* * * * *
8117685 ACACCTTAGGGAATATCATCAATCCATATGCGGTCAAAGCAAATACATCCAACCCCTGATCAGTA
66 ACACCTTAGGAAATATCATCAATCCATATGCGATCAAAGCAAACACATCCAACCCATGATAAGTA
*
8117750 TCAATATACTTTTTTATGTACTCGAGCAGAAAAGCTGATGGAATGGTGTCAACCCCGTTCTTTTT
131 TCAATATACTTTTTTATGTACTCGAGCAGAAAAGCTGATGGAATGGTGTCAACCCCGTTCTTTTC
*
8117815 CTTCTTGTGCTTATCTATCTCTTCAACCTCCACTTGCATGATCTTGGCTAACTTTTTTCTATATC
196 CTTCTTGTGCTTATCTATCTCTTCAACCTCCACTTGCATGATCTTGGCTAACTTCTTTCTATATC
8117880 CGATAGTCTTATGCTCTTTCCAATAAATCTTATCTTGATTGGTAGACTCTATAT-GAAGTAAAGA
261 CGATAGTCTTATGCTCTTTCCAATAAATCTTATCTTGATTGGTAGACTCTAT-TCGAAGTAAAGA
8117944 AGAATATTTTTCGATCA
325 AGAATATTTTTCGATCA
* *
8117961 TGAAAGGTTTATACCTTTATCTAATTGCTCAAATAAATCGACCACTAATGCTTCTATATGTCCTA
1 TGAAAGGTTTATACCTTTATCTAATTGCTCAAAGAAATCAACCACTAATGCTTCTATATGTCCTA
*
8118026 ACACCTTAGGAAATATCATCAATCTATATGCGATCAAAGCAAACACATCCAACCCATGATAAGTA
66 ACACCTTAGGAAATATCATCAATCCATATGCGATCAAAGCAAACACATCCAACCCATGATAAGTA
8118091 TCAATATACTTTTTTATGTACTCGAGCAGAAAAGCTGATGGAATGGTGTCAACCCCGTTCTTTTC
131 TCAATATACTTTTTTATGTACTCGAGCAGAAAAGCTGATGGAATGGTGTCAACCCCGTTCTTTTC
* * * *
8118156 CTTTTTGTGCTTGTCTATCTTTTCAACCTCCACTTGCATGATCTTGGCTAACTTCTTTCTATATT
196 CTTCTTGTGCTTATCTATCTCTTCAACCTCCACTTGCATGATCTTGGCTAACTTCTTTCTATATC
* * * * *
8118221 CGGTAGTCTTATGCTCTTTTCAATAGATCTTATTTTGATTGGTAGACTCTATTCGGAGTAAAGAA
261 CGATAGTCTTATGCTCTTTCCAATAAATCTTATCTTGATTGGTAGACTCTATTCGAAGTAAAGAA
8118286 GAATATTTTTCGATC
326 GAATATTTTTCGATC
8118301 GTGGGGGCTA
Statistics
Matches: 318, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
340 1 0.00
341 317 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (341 bp):
TGAAAGGTTTATACCTTTATCTAATTGCTCAAAGAAATCAACCACTAATGCTTCTATATGTCCTA
ACACCTTAGGAAATATCATCAATCCATATGCGATCAAAGCAAACACATCCAACCCATGATAAGTA
TCAATATACTTTTTTATGTACTCGAGCAGAAAAGCTGATGGAATGGTGTCAACCCCGTTCTTTTC
CTTCTTGTGCTTATCTATCTCTTCAACCTCCACTTGCATGATCTTGGCTAACTTCTTTCTATATC
CGATAGTCTTATGCTCTTTCCAATAAATCTTATCTTGATTGGTAGACTCTATTCGAAGTAAAGAA
GAATATTTTTCGATCA
Found at i:8120452 original size:3 final size:3
Alignment explanation
Indices: 8120444--8120468 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8120434 GTTTTAATTT
8120444 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
8120469 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8122003 original size:33 final size:32
Alignment explanation
Indices: 8121958--8122065 Score: 137
Period size: 32 Copynumber: 3.3 Consensus size: 32
8121948 TAAGTTTTTA
*
8121958 AAACCCCTAAAAATCCAAAATCCTTTAAATCC
1 AAACCCCTAAAAATCCAAAATCCCTTAAATCC
*
8121990 AAACCCCTAAAAAATCTAAAATCCCTTAAATCC
1 AAACCCCT-AAAAATCCAAAATCCCTTAAATCC
* * *
8122023 AAACCCCCT-AAAATCCGAAACCCCTAAAATCC
1 AAA-CCCCTAAAAATCCAAAATCCCTTAAATCC
*
8122055 AAACCCTTAAA
1 AAACCCCTAAA
8122066 TCAAAACTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
31 4 0.06
32 32 0.48
33 25 0.38
34 5 0.08
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (32 bp):
AAACCCCTAAAAATCCAAAATCCCTTAAATCC
Found at i:8122031 original size:16 final size:15
Alignment explanation
Indices: 8121958--8122065 Score: 90
Period size: 16 Copynumber: 6.7 Consensus size: 15
8121948 TAAGTTTTTA
8121958 AAACCCCTAAAAATCC
1 AAACCCCT-AAAATCC
* * *
8121974 AAAATCCTTTAAATCC
1 -AAACCCCTAAAATCC
*
8121990 AAACCCCTAAAAAATCTA
1 AAACCCCT--AAAATC-C
* *
8122008 AAATCCCTTAAATCC
1 AAACCCCTAAAATCC
8122023 AAACCCCCTAAAATCC
1 AAA-CCCCTAAAATCC
8122039 GAAACCCCTAAAATCC
1 -AAACCCCTAAAATCC
*
8122055 AAACCCTTAAA
1 AAACCCCTAAA
8122066 TCAAAACTCC
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
15 19 0.26
16 33 0.45
17 14 0.19
18 7 0.10
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (15 bp):
AAACCCCTAAAATCC
Found at i:8122108 original size:30 final size:29
Alignment explanation
Indices: 8122068--8122129 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
8122058 CCCTTAAATC
*
8122068 AAAACTCCAAACCTCAAAACCTAAACCCT
1 AAAACTCCAAACCTCAAAACCAAAACCCT
* * *
8122097 AAAATCTCCAAACTTTAAAATCAAAACCCT
1 AAAA-CTCCAAACCTCAAAACCAAAACCCT
8122127 AAA
1 AAA
8122130 CCTTTCATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.18
Consensus pattern (29 bp):
AAAACTCCAAACCTCAAAACCAAAACCCT
Found at i:8124559 original size:11 final size:11
Alignment explanation
Indices: 8124537--8124592 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
8124527 GTGGGCTGAA
8124537 CAGGGAGCTGGT
1 CAGGG-GCTGGT
8124549 CAGGGGCTGGT
1 CAGGGGCTGGT
*
8124560 CAGGAGGCT-GA
1 CAGG-GGCTGGT
8124571 CAGGGGGCTGGT
1 CA-GGGGCTGGT
*
8124583 CGGGGGCTGG
1 CAGGGGCTGG
8124593 ACAGAGGTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
11 25 0.66
12 13 0.34
ACGTcount: A:0.12, C:0.18, G:0.55, T:0.14
Consensus pattern (11 bp):
CAGGGGCTGGT
Found at i:8124563 original size:23 final size:24
Alignment explanation
Indices: 8124537--8124596 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
8124527 GTGGGCTGAA
*
8124537 CAGGGAGCTGGTCA-GGGGCTGGT
1 CAGGGAGCTGGACAGGGGGCTGGT
8124560 CA-GGAGGCT-GACAGGGGGCTGGT
1 CAGGGA-GCTGGACAGGGGGCTGGT
*
8124583 C-GGGGGCTGGACAG
1 CAGGGAGCTGGACAG
8124597 AGGTGGCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
22 9 0.29
23 22 0.71
ACGTcount: A:0.15, C:0.18, G:0.53, T:0.13
Consensus pattern (24 bp):
CAGGGAGCTGGACAGGGGGCTGGT
Found at i:8124672 original size:15 final size:16
Alignment explanation
Indices: 8124649--8124678 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8124639 TTTCTTTTTT
8124649 TTAATTTTTTAATTAG
1 TTAATTTTTTAATTAG
8124665 TTAA-TTTTTAATTA
1 TTAATTTTTTAATTA
8124679 ATAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TTAATTTTTTAATTAG
Found at i:8124727 original size:3 final size:3
Alignment explanation
Indices: 8124714--8124755 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
8124704 ATATTTTAAA
*
8124714 TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8124756 ACTAAAATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:8125585 original size:47 final size:48
Alignment explanation
Indices: 8125499--8125595 Score: 169
Period size: 47 Copynumber: 2.0 Consensus size: 48
8125489 GGTTTCCTTG
*
8125499 AACTTTCTTTCTATATTTTTTTTCTCTTAAAATGTTTTAAAAAATTAT
1 AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
*
8125547 AACTTTCTTTCTATA-TTTTCTTCTCTTAAAATGTTTTAAACAATTAT
1 AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
8125594 AA
1 AA
8125596 AACAAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 32 0.68
48 15 0.32
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (48 bp):
AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
Found at i:8126864 original size:26 final size:25
Alignment explanation
Indices: 8126833--8126889 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
8126823 TTTGAATTTG
*
8126833 AATTTAAATTTGAGCAT-ACATAATTA
1 AATTTAAAATTGAGCATGA-A-AATTA
*
8126859 AATTTAAAATTGAGTATGAAAATTA
1 AATTTAAAATTGAGCATGAAAATTA
8126884 AATTTA
1 AATTTA
8126890 TTTTAATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 11 0.39
26 16 0.57
27 1 0.04
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.39
Consensus pattern (25 bp):
AATTTAAAATTGAGCATGAAAATTA
Found at i:8129261 original size:47 final size:48
Alignment explanation
Indices: 8129175--8129271 Score: 178
Period size: 47 Copynumber: 2.0 Consensus size: 48
8129165 GGTTTCCTTA
*
8129175 AACTTTCTTTCTATATTTTTTTTCTCTTAAAATGTTTTAAAAAATTAT
1 AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
8129223 AACTTTCTTTCTATA-TTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
1 AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
8129270 AA
1 AA
8129272 AACAAAAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 33 0.69
48 15 0.31
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (48 bp):
AACTTTCTTTCTATATTTTTCTTCTCTTAAAATGTTTTAAAAAATTAT
Found at i:8135519 original size:15 final size:15
Alignment explanation
Indices: 8135478--8135525 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
8135468 TGATTGTTTT
* *
8135478 TTTGACCCAAACTCAA
1 TTTGATCCAAAAT-AA
*
8135494 TTTGTATCCAAAGTAA
1 TTTG-ATCCAAAATAA
8135510 TTTGATCCAAAATAA
1 TTTGATCCAAAATAA
8135525 T
1 T
8135526 CAAACTCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.39
16 10 0.36
17 7 0.25
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (15 bp):
TTTGATCCAAAATAA
Found at i:8137547 original size:194 final size:194
Alignment explanation
Indices: 8137194--8137574 Score: 676
Period size: 193 Copynumber: 2.0 Consensus size: 194
8137184 ACTTACAAAA
*
8137194 CAAATAAAATTTAGAGCTTAATCTTTGGGCCTAAAATTTACTTTTCTAATTAAGGCCCAATTGCA
1 CAAATAAAATTTAGAGCTTAATCTTTGGACCTAAAATTTACTTTTCTAATTAAGGCCCAATTGCA
8137259 TAATCAAAACCAAAATTTAAAGCCCAATGAATTTTAAAAAATCCCCAGAAAAATAGGGTGTCTAC
66 TAATCAAAACCAAAATTTAAAGCCCAATGAATTTTAAAAAATCCCCAGAAAAATAGGGTGTCTAC
* *
8137324 ACTTGGTTATTTGTTAGTTGTTTCTAGGACAAGTATACTTTTATCTTTTTTTTTTTTTAAGTTG
131 ACTTGATTATTTGTTAGTTGTTTCTAGGACAAGTATACTTTTATCTTTTTTTATTTTTAAGTTG
8137388 CAAATAAAATTTAGAGCTTAAT-TTTGGACCTAAAATTTACTTTTCTAATTAAGGCCCAATTGCA
1 CAAATAAAATTTAGAGCTTAATCTTTGGACCTAAAATTTACTTTTCTAATTAAGGCCCAATTGCA
* *
8137452 TAATCAAAATCAAAATTTAAAGCCCAATGAATTTTAAAAAATCCCTAGACAAAAT-GGAGTGTCT
66 TAATCAAAACCAAAATTTAAAGCCCAATGAATTTTAAAAAATCCCCAGA-AAAATAGG-GTGTCT
*
8137516 ACATTTGATTATTTGTTAGTTGTTTCTAGGACAAGTATACTTTTATCTTTTTTTATTTT
129 ACACTTGATTATTTGTTAGTTGTTTCTAGGACAAGTATACTTTTATCTTTTTTTATTTT
8137575 ATTTTTAAGT
Statistics
Matches: 179, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
193 90 0.50
194 89 0.50
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (194 bp):
CAAATAAAATTTAGAGCTTAATCTTTGGACCTAAAATTTACTTTTCTAATTAAGGCCCAATTGCA
TAATCAAAACCAAAATTTAAAGCCCAATGAATTTTAAAAAATCCCCAGAAAAATAGGGTGTCTAC
ACTTGATTATTTGTTAGTTGTTTCTAGGACAAGTATACTTTTATCTTTTTTTATTTTTAAGTTG
Found at i:8141930 original size:17 final size:18
Alignment explanation
Indices: 8141886--8141933 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
8141876 ATTAATTCCA
*
8141886 TGCAATTTATTTTTTTAT
1 TGCAATTTATTTTTTGAT
* *
8141904 TGTAAATTATTTTTTGAT
1 TGCAATTTATTTTTTGAT
8141922 T-CAATTTATTTT
1 TGCAATTTATTTT
8141934 CTGTGCACAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (18 bp):
TGCAATTTATTTTTTGAT
Found at i:8141966 original size:2 final size:2
Alignment explanation
Indices: 8141959--8141985 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8141949 TTATGAACCA
8141959 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8141986 ATAACACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8142271 original size:13 final size:14
Alignment explanation
Indices: 8142243--8142281 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
8142233 AACTATTTTC
8142243 TAAAAATTAA-AGAT
1 TAAAAATTAAGA-AT
8142257 TAAAAA-TAAGAAT
1 TAAAAATTAAGAAT
8142270 TAAAAATTAAGA
1 TAAAAATTAAGA
8142282 TAAATAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (14 bp):
TAAAAATTAAGAAT
Found at i:8142803 original size:22 final size:21
Alignment explanation
Indices: 8142770--8142810 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8142760 ATCATTCTTT
*
8142770 AATGAAAGTTTCCACATTTAA
1 AATGAAAATTTCCACATTTAA
*
8142791 AATGATAAATTTCCATATTT
1 AATGA-AAATTTCCACATTT
8142811 CATCTTCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (21 bp):
AATGAAAATTTCCACATTTAA
Found at i:8143105 original size:23 final size:23
Alignment explanation
Indices: 8143069--8143113 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8143059 GAAAACATGC
*
8143069 AAAAAACGACAAAAAAGAAAAAG
1 AAAAAACGAAAAAAAAGAAAAAG
* *
8143092 AAAAAAGGAAAAAAATGAAAAA
1 AAAAAACGAAAAAAAAGAAAAA
8143114 AAATGAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.02
Consensus pattern (23 bp):
AAAAAACGAAAAAAAAGAAAAAG
Found at i:8145115 original size:22 final size:22
Alignment explanation
Indices: 8145096--8145137 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8145086 CATGATCTAT
*
8145096 AAGACCTTTAGGCATAATCTCA
1 AAGACCTCTAGGCATAATCTCA
*
8145118 AAGACCTCTAGGCATGATCT
1 AAGACCTCTAGGCATAATCT
8145138 TTAAAACTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (22 bp):
AAGACCTCTAGGCATAATCTCA
Found at i:8145435 original size:11 final size:10
Alignment explanation
Indices: 8145412--8145442 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
8145402 AATTCATAAA
8145412 GATTCTTGAT
1 GATTCTTGAT
8145422 GATTCTTAGAT
1 GATTCTT-GAT
8145433 GATTCTTGAT
1 GATTCTTGAT
8145443 CATATTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (10 bp):
GATTCTTGAT
Found at i:8149458 original size:28 final size:29
Alignment explanation
Indices: 8149414--8149485 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
8149404 GGTAGGCTCA
* * *
8149414 TTTTATTT-TTTTATTTTGTATTTTGTAT
1 TTTTATTTATATTATTTTATATTATGTAT
*
8149442 TTTTATTTATATT-TTTTATCTTATGTAT
1 TTTTATTTATATTATTTTATATTATGTAT
8149470 TTATTATTTAT-TTATT
1 TT-TTATTTATATTATT
8149486 ATACTATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 24 0.65
29 13 0.35
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.75
Consensus pattern (29 bp):
TTTTATTTATATTATTTTATATTATGTAT
Found at i:8149480 original size:4 final size:4
Alignment explanation
Indices: 8149415--8149582 Score: 61
Period size: 4 Copynumber: 42.8 Consensus size: 4
8149405 GTAGGCTCAT
* * * *
8149415 TTTA TTTT TTTA TTT- TGTA TTT- TGTA -TT- TTTA TTTA TATTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
* *
8149460 TCTTA TGTA TTTA -TTA TTTA TTTA -TTA TACTA TTTA TTTA TATATA
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA
* * * *
8149506 TTT- TTTA -TTA TTTA TCTG TTAATA TATA TGTA TTTA -TTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
8149552 TCTA TTAA TATT- TTTA TTTA TCTA ATTA TTT
1 TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTT
8149583 TCTTTTAACT
Statistics
Matches: 119, Mismatches: 27, Indels: 36
0.65 0.15 0.20
Matches are distributed among these distances:
3 27 0.23
4 74 0.62
5 13 0.11
6 5 0.04
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:8149480 original size:33 final size:31
Alignment explanation
Indices: 8149415--8149485 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 31
8149405 GTAGGCTCAT
8149415 TTTATTTTTTTATTTTGTATTTTGTATTTTTA
1 TTTATTTTTTTATTTTGTATTTTGTA-TTTTA
8149447 TTTATATTTTTTATCTTATGTATTTAT-TA-TTTA
1 TTTAT-TTTTTTAT-TT-TGTATTT-TGTATTTTA
8149480 TTTATT
1 TTTATT
8149486 ATACTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
32 6 0.17
33 17 0.49
34 2 0.06
35 9 0.26
36 1 0.03
ACGTcount: A:0.20, C:0.01, G:0.04, T:0.75
Consensus pattern (31 bp):
TTTATTTTTTTATTTTGTATTTTGTATTTTA
Found at i:8149487 original size:7 final size:7
Alignment explanation
Indices: 8149415--8149572 Score: 64
Period size: 7 Copynumber: 21.7 Consensus size: 7
8149405 GTAGGCTCAT
8149415 TTTATT-
1 TTTATTA
8149421 TTT-TTA
1 TTTATTA
8149427 TTT-TGTA
1 TTTAT-TA
8149434 TTT-TGTA
1 TTTAT-TA
8149441 TTT-TTA
1 TTTATTA
8149447 TTTA-TA
1 TTTATTA
*
8149453 TTTTTTA
1 TTTATTA
8149460 TCTTATGTA
1 T-TTAT-TA
8149469 TTTATTA
1 TTTATTA
8149476 TTTATTTA
1 TTTA-TTA
*
8149484 TTATACTA
1 TT-TATTA
8149492 TTTATTTA
1 TTTA-TTA
*
8149500 TATATATTT
1 T-T-TATTA
8149509 TTTATTA
1 TTTATTA
*
8149516 TTTATCTG
1 TTTAT-TA
8149524 TTAATATATA
1 TT--TAT-TA
*
8149534 TGTATT-
1 TTTATTA
8149540 TATTATTA
1 T-TTATTA
8149548 TTTATCTA
1 TTTAT-TA
*
8149556 -TTAATA
1 TTTATTA
8149562 TTT-TTA
1 TTTATTA
8149568 TTTAT
1 TTTAT
8149573 CTAATTATTT
Statistics
Matches: 120, Mismatches: 13, Indels: 37
0.71 0.08 0.22
Matches are distributed among these distances:
5 2 0.02
6 25 0.21
7 48 0.40
8 29 0.24
9 9 0.08
10 7 0.06
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:8149493 original size:16 final size:15
Alignment explanation
Indices: 8149470--8149572 Score: 90
Period size: 14 Copynumber: 7.1 Consensus size: 15
8149460 TCTTATGTAT
8149470 TTAT-TATTTATTTA
1 TTATATATTTATTTA
8149484 TTATACTATTTATTTA
1 TTATA-TATTTATTTA
8149500 -TATATATTT-TTTA
1 TTATATATTTATTTA
* * *
8149513 TTATTTATCT-GTTA
1 TTATATATTTATTTA
* *
8149527 ATATATATGTATTTA
1 TTATATATTTATTTA
*
8149542 TTAT-TATTTATCTA
1 TTATATATTTATTTA
*
8149556 TTAATATTTTTATTTA
1 TT-ATATATTTATTTA
8149572 T
1 T
8149573 CTAATTATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
13 4 0.06
14 36 0.51
15 12 0.17
16 19 0.27
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATATATTTATTTA
Found at i:8149496 original size:36 final size:35
Alignment explanation
Indices: 8149423--8149552 Score: 89
Period size: 36 Copynumber: 3.8 Consensus size: 35
8149413 ATTTTATTTT
* *
8149423 TTTATTT-TGTATTT-TGTA-TT-TTTATTTATATTT
1 TTTATTTATGTATTTAT-TATTTATTTATTTAT-CTA
8149456 TTTATCTTATGTATTTATTATTTATTTA-TTATACTA
1 TTTAT-TTATGTATTTATTATTTATTTATTTAT-CTA
* * *
8149492 TTTATTTA--TATATATTTTTTA-TTATTTATCTG
1 TTTATTTATGTATTTATTATTTATTTATTTATCTA
*
8149524 TTAATATATATGTATTTATTA-TTATTTAT
1 TT--TATTTATGTATTTATTATTTATTTAT
8149553 CTATTAATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
32 7 0.09
33 20 0.26
34 7 0.09
35 15 0.19
36 25 0.32
37 4 0.05
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (35 bp):
TTTATTTATGTATTTATTATTTATTTATTTATCTA
Found at i:8149568 original size:20 final size:20
Alignment explanation
Indices: 8149540--8149608 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
8149530 TATATGTATT
*
8149540 TATTATTATTTATCTATTAA
1 TATTTTTATTTATCTATTAA
*
8149560 TATTTTTATTTATCTAATTAT
1 TATTTTTATTTATCT-ATTAA
* **
8149581 TTTCTTTTAACTATCTATTAA
1 TAT-TTTTATTTATCTATTAA
*
8149602 CATTTTT
1 TATTTTT
8149609 TCATTTTATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 18 0.46
21 11 0.28
22 10 0.26
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTTATTTATCTATTAA
Found at i:8149577 original size:17 final size:17
Alignment explanation
Indices: 8149536--8149583 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
8149526 AATATATATG
*
8149536 TATTTATTATTATTTATC
1 TATTAATTATT-TTTATC
*
8149554 TATTAA-TATTTTTATT
1 TATTAATTATTTTTATC
8149570 TATCTAATTATTTT
1 TAT-TAATTATTTT
8149584 CTTTTAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 8 0.31
17 7 0.27
18 11 0.42
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTAATTATTTTTATC
Found at i:8149582 original size:32 final size:32
Alignment explanation
Indices: 8149463--8149562 Score: 110
Period size: 32 Copynumber: 3.0 Consensus size: 32
8149453 TTTTTTATCT
* *
8149463 TATGTATTTATTATTTATTTATTATACTATTTATTTA
1 TATGTATTTATTA-TTA--T-TTAT-CTATTAATATA
* * *
8149500 TATATATTTTTTATTATTTATCTGTTAATATA
1 TATGTATTTATTATTATTTATCTATTAATATA
8149532 TATGTATTTATTATTATTTATCTATTAATAT
1 TATGTATTTATTATTATTTATCTATTAATAT
8149563 TTTTATTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
32 36 0.65
33 4 0.07
34 1 0.02
36 3 0.05
37 11 0.20
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (32 bp):
TATGTATTTATTATTATTTATCTATTAATATA
Found at i:8150529 original size:6 final size:6
Alignment explanation
Indices: 8150509--8150542 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
8150499 AATTATTTAG
8150509 TATTTCT TA-TTT TATTTT TATTTT TATTTT TATT
1 TATTT-T TATTTT TATTTT TATTTT TATTTT TATT
8150543 ATTTCTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 3 0.12
6 21 0.81
7 2 0.08
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:8150644 original size:58 final size:58
Alignment explanation
Indices: 8150564--8150900 Score: 448
Period size: 58 Copynumber: 5.8 Consensus size: 58
8150554 TAAAATTCAA
* *
8150564 AAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
1 AAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
* * *
8150623 AAAAAATATTTTTGACAAAAAGTTGAAAGTATTAATTTTCTTTGAAAATAAGGTTTT-T
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-GTTTTCT
* *
8150681 AAAAAATATTTTTGAGTAAAAA-TTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAG-AAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
8150739 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTTCT
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG--TTTTCT
* * * * * *
8150799 AAAAAATATTTCCTAAGGAAAAGTTGAAAATATCAATTTTCCTCGAAATTAAAG-TTTCT
1 AAAAAATATTT-TTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTTTTCT
* *
8150858 AAAAAATATTTTGGAG-AAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
8150901 TACAAAAGCA
Statistics
Matches: 246, Mismatches: 24, Indels: 18
0.85 0.08 0.06
Matches are distributed among these distances:
57 33 0.13
58 131 0.53
59 31 0.13
60 16 0.07
61 32 0.13
62 3 0.01
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.39
Consensus pattern (58 bp):
AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
Found at i:8152859 original size:20 final size:22
Alignment explanation
Indices: 8152821--8152860 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
8152811 TTTTGTACTT
8152821 ATGGATGAAAAGCCATTTTCGA
1 ATGGATGAAAAGCCATTTTCGA
8152843 ATGGA-GAAAAG-CATTTTC
1 ATGGATGAAAAGCCATTTTC
8152861 TCCAAGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (22 bp):
ATGGATGAAAAGCCATTTTCGA
Found at i:8162449 original size:42 final size:42
Alignment explanation
Indices: 8162395--8162733 Score: 327
Period size: 42 Copynumber: 8.1 Consensus size: 42
8162385 AAGTTCTAAT
8162395 GCCTCTGT-TTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
1 GCCTCT-TATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* *
8162437 GCCTCTTATTAGAGGAGC--CATTTATTTTCAAAGTCATTAA
1 GCCTCTTATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
**
8162477 GCCTCTGT-TTAGAGGAGCTTTATTTATTTTCAAAGTTGTTGA
1 GCCTCT-TATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* * * *
8162519 GCCTCTGATTAGAGGAGC--CATTTATCTTCAAAGTCGTTGA
1 GCCTCTTATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* * * * **
8162559 ACCTCTGT-TTGGAGGAGCTTTATCTATTTGCAAAGTTGTTGA
1 GCCTCT-TATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* * * *
8162601 GCCTCTAATTAGAAGAGC--CATTTATTTTCAAAATCATTGA
1 GCCTCTTATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* ** * *
8162641 GCCTCTGATTAGAGGATTTTTATTTATTTTTAAAGTCGTTGA
1 GCCTCTTATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
* * *
8162683 GCCTCTGATTAGAGGAGCTTTGTTTATGTTTTTCAAAGTCATTAA
1 GCCTCTTATTAGAGGAGCTTTATTTA---TTTTCAAAGTCATTGA
8162728 GCCTCT
1 GCCTCT
8162734 GCTTAGGGGA
Statistics
Matches: 241, Mismatches: 42, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
40 99 0.41
41 2 0.01
42 121 0.50
45 19 0.08
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (42 bp):
GCCTCTTATTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
Found at i:8162495 original size:82 final size:82
Alignment explanation
Indices: 8162395--8162744 Score: 450
Period size: 82 Copynumber: 4.2 Consensus size: 82
8162385 AAGTTCTAAT
* *
8162395 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCATTGAGCCTCTTATTAGAGGAGCCATTT
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
8162460 ATTTTCAAAGTCATTAA
66 ATTTTCAAAGTCATTAA
*
8162477 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTT
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
* *
8162542 ATCTTCAAAGTCGTTGAA
66 ATTTTCAAAGTCATT-AA
* * * * * *
8162560 -CCTCTGTTTGGAGGAGCTTTATCTATTTGCAAAGTTGTTGAGCCTCTAATTAGAAGAGCCATTT
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
* *
8162624 ATTTTCAAAATCATTGA
66 ATTTTCAAAGTCATTAA
* ** * **
8162641 GCCTCTGATTAGAGGATTTTTATTTATTTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGT
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CAT
8162706 TTATGTTTTTCAAAGTCATTAA
64 TTA---TTTTCAAAGTCATTAA
* *
8162728 GCCTCTGCTTAGGGGAG
1 GCCTCTGTTTAGAGGAG
8162745 TTTTGATCAA
Statistics
Matches: 230, Mismatches: 31, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
81 1 0.00
82 195 0.85
83 2 0.01
84 4 0.02
87 28 0.12
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (82 bp):
GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTT
ATTTTCAAAGTCATTAA
Found at i:8162938 original size:7 final size:7
Alignment explanation
Indices: 8162922--8163044 Score: 72
Period size: 7 Copynumber: 16.9 Consensus size: 7
8162912 GGTTGGCTCA
8162922 TTTTATTT
1 TTTTA-TT
8162930 TTTTATT
1 TTTTATT
*
8162937 TTGTATT
1 TTTTATT
*
8162944 TTGTATT
1 TTTTATT
*
8162951 TTGTATT
1 TTTTATT
*
8162958 TTGTA-T
1 TTTTATT
8162964 TTTTATT
1 TTTTATT
8162971 TATTTA-T
1 T-TTTATT
8162978 TTTTATCT
1 TTTTAT-T
*
8162986 TATGTATT
1 T-TTTATT
*
8162994 TATTATT
1 TTTTATT
8163001 TATTTATT
1 T-TTTATT
*
8163009 TATTATT
1 TTTTATT
8163016 ACTATTTA-T
1 --T-TTTATT
*
8163025 TTATATT
1 TTTTATT
8163032 TTTTATT
1 TTTTATT
*
8163039 ATTTAT
1 TTTTAT
8163045 CTGTTAATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 21
0.75 0.09 0.17
Matches are distributed among these distances:
6 12 0.13
7 54 0.57
8 19 0.20
9 6 0.06
10 3 0.03
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (7 bp):
TTTTATT
Found at i:8162950 original size:14 final size:13
Alignment explanation
Indices: 8162922--8163015 Score: 80
Period size: 14 Copynumber: 6.5 Consensus size: 13
8162912 GGTTGGCTCA
*
8162922 TTTTATTTTTTTAT
1 TTTTA-TTTTGTAT
8162936 TTTGTATTTTGTAT
1 TTT-TATTTTGTAT
8162950 TTTGTATTTTGTAT
1 TTT-TATTTTGTAT
*
8162964 TTTTATTTATTTAT
1 TTTTATTT-TGTAT
8162978 TTTTATCTTATGTAT
1 TTTTAT-TT-TGTAT
*
8162993 TTATTATTTATTTAT
1 TT-TTATTT-TGTAT
8163008 TTATTATT
1 TT-TTATT
8163016 ACTATTTATT
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
13 5 0.07
14 37 0.51
15 26 0.36
16 4 0.06
ACGTcount: A:0.19, C:0.01, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTTATTTTGTAT
Found at i:8162957 original size:21 final size:21
Alignment explanation
Indices: 8162928--8163001 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 21
8162918 CTCATTTTAT
8162928 TTTTTTATTTTGTATTTTGTA
1 TTTTTTATTTTGTATTTTGTA
*
8162949 TTTTGTATTTTGTATTTT-TA
1 TTTTTTATTTTGTATTTTGTA
8162969 TTTATTTATTTT-TATCTTATGTA
1 TTT-TTTATTTTGTAT-TT-TGTA
*
8162992 TTTATTATTT
1 TTTTTTATTT
8163002 ATTTATTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
20 8 0.17
21 26 0.57
22 7 0.15
23 5 0.11
ACGTcount: A:0.18, C:0.01, G:0.07, T:0.74
Consensus pattern (21 bp):
TTTTTTATTTTGTATTTTGTA
Found at i:8162974 original size:4 final size:4
Alignment explanation
Indices: 8162965--8163128 Score: 87
Period size: 4 Copynumber: 41.8 Consensus size: 4
8162955 ATTTTGTATT
*
8162965 TTTA TTTA TTTA -TT- TTTA TCTTA TGTA TTTA -TTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
8163011 -TTA TTACTA TTTA TTTA TATTT TTTA -TTA TTTA TCTG TTAATA TATA
1 TTTA TT--TA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TT--TA TTTA
* * * *
8163058 TGTA TTTA -TTA -TTA TTTA TCTA TTTA TATA -TTA -TTA TTTA TCTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
8163102 TTAA TATT- TTTA TTTA TCTA ATTA TTT
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTT
8163129 TCTTTTAATT
Statistics
Matches: 122, Mismatches: 23, Indels: 30
0.70 0.13 0.17
Matches are distributed among these distances:
3 26 0.21
4 82 0.67
5 8 0.07
6 6 0.05
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:8162993 original size:19 final size:19
Alignment explanation
Indices: 8162965--8163118 Score: 110
Period size: 18 Copynumber: 8.3 Consensus size: 19
8162955 ATTTTGTATT
8162965 TTTATTTATTTATT-TTTA
1 TTTATTTATTTATTATTTA
*
8162983 TCTTATGTATTTATTATTTA
1 T-TTATTTATTTATTATTTA
*
8163003 TTTATTTA-TTATTA-CTA
1 TTTATTTATTTATTATTTA
*
8163020 TTTATTTA--TATTTTTTA
1 TTTATTTATTTATTATTTA
* *
8163037 -TTATTTATCTGTTAATATATA
1 TTTATTTA--T-TTATTATTTA
*
8163058 TGTATTTA-TTATTATTTA
1 TTTATTTATTTATTATTTA
* *
8163076 TCTATTTATATATTA-TTA
1 TTTATTTATTTATTATTTA
*
8163094 TTTATCTATTAATATT-TTTA
1 TTTATTTATT--TATTATTTA
8163114 TTTAT
1 TTTAT
8163119 CTAATTATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 24
0.73 0.11 0.16
Matches are distributed among these distances:
16 11 0.10
17 12 0.11
18 32 0.30
19 23 0.21
20 17 0.16
21 6 0.06
22 6 0.06
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATTTATTTATTATTTA
Found at i:8163070 original size:32 final size:32
Alignment explanation
Indices: 8162966--8163104 Score: 109
Period size: 32 Copynumber: 4.1 Consensus size: 32
8162956 TTTTGTATTT
* ** *
8162966 TTATTTATTTATTTTTATCTTATGTATTTATTA
1 TTATTTATCTATTAATATATTAT-TATTTATTA
* * *
8162999 TTTATTTATTTATTATTACTATTTATTTATATTTTTTA
1 -TTATTTATCTATTAATA-TA-TTA--T-TATTTATTA
*
8163037 TTATTTATCTGTTAATATA-TATGTATTTATTA
1 TTATTTATCTATTAATATATTAT-TATTTATTA
*
8163069 TTATTTATCTATTTATATATTATTATTTATCTA
1 TTATTTATCTATTAATATATTATTATTTAT-TA
8163102 TTA
1 TTA
8163105 ATATTTTTAT
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
32 33 0.38
33 8 0.09
34 18 0.20
35 1 0.01
36 5 0.06
37 14 0.16
38 9 0.10
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (32 bp):
TTATTTATCTATTAATATATTATTATTTATTA
Found at i:8163095 original size:14 final size:14
Alignment explanation
Indices: 8162961--8163110 Score: 69
Period size: 14 Copynumber: 10.4 Consensus size: 14
8162951 TTGTATTTTG
*
8162961 TATTTTTAT-TTATT
1 TATTTATATATTA-T
* *
8162975 TATTTTTATCTTAT
1 TATTTATATATTAT
8162989 GTATTTAT-TATTTATT
1 -TATTTATATA-TTA-T
*
8163005 TATTTAT-TATTAC
1 TATTTATATATTAT
*
8163018 TATTTATTTA-TAT
1 TATTTATATATTAT
*
8163031 TTTTTAT-TATTTAT
1 TATTTATATA-TTAT
* *
8163045 CTGTTAATATA-TAT
1 -TATTTATATATTAT
8163059 GTATTTATTATTATTTAT
1 -TATTTA-TA-TA-TTAT
8163077 CTATTTATATATTAT
1 -TATTTATATATTAT
* *
8163092 TATTTATCTATTAA
1 TATTTATATATTAT
8163106 TATTT
1 TATTT
8163111 TTATTTATCT
Statistics
Matches: 110, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
12 2 0.02
13 15 0.14
14 43 0.39
15 32 0.29
16 7 0.06
17 2 0.02
18 9 0.08
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (14 bp):
TATTTATATATTAT
Found at i:8163115 original size:42 final size:40
Alignment explanation
Indices: 8162990--8163154 Score: 106
Period size: 42 Copynumber: 4.0 Consensus size: 40
8162980 TTATCTTATG
*
8162990 TATTTATTATTTATTTATTTATTA-TTA-CTATTTAT-TTATAT
1 TATTTATTATTTA-TTA-TTATTATTTATCTATTAATATT-T-T
* * * * * *
8163031 TTTTTATTATTTATCTGTTAATATATATGTATT--TATTAT
1 TATTTATTATTTAT-TATTATTATTTATCTATTAATATTTT
8163070 TATTTATCTATTTATATATTATTATTTATCTATTAATATTTT
1 TATTTAT-TATTTAT-TATTATTATTTATCTATTAATATTTT
* * * * *
8163112 TATTTATCTAATTATTTTCTTTTAATTATCTATTAACATTTT
1 TATTTAT-TATTTATTAT-TATTATTTATCTATTAATATTTT
8163154 T
1 T
8163155 TCATTTGATT
Statistics
Matches: 98, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
39 7 0.07
40 28 0.29
41 19 0.19
42 44 0.45
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (40 bp):
TATTTATTATTTATTATTATTATTTATCTATTAATATTTT
Found at i:8164042 original size:10 final size:10
Alignment explanation
Indices: 8164027--8164101 Score: 50
Period size: 10 Copynumber: 7.4 Consensus size: 10
8164017 ATTAGAATTA
8164027 TTTATTATTT
1 TTTATTATTT
8164037 TTTATT-TTAT
1 TTTATTATT-T
*
8164047 TTTATTCTATT
1 TTTATTAT-TT
* *
8164058 TTTATCTCTATG
1 TTTAT-TAT-TT
8164070 TTTA-T-TTT
1 TTTATTATTT
8164078 TTT-TTATTT
1 TTTATTATTT
8164087 TTTATTATTT
1 TTTATTATTT
8164097 CTTTA
1 -TTTA
8164102 AATAAAATTC
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
8 5 0.09
9 9 0.16
10 20 0.36
11 11 0.20
12 10 0.18
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.76
Consensus pattern (10 bp):
TTTATTATTT
Found at i:8164322 original size:61 final size:58
Alignment explanation
Indices: 8164117--8164454 Score: 419
Period size: 58 Copynumber: 5.7 Consensus size: 58
8164107 AATTCAAAAG
* *
8164117 AAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTGTTCTAA
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAA
* * *
8164175 AAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAA
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAA
*
8164233 AAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTGAAAATAAGTTTTTTCTAA
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG--TTTTCTAA
* * * * ***
8164293 AAATTATTTCCTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAGTTTAAAAA
1 AAAATATTT-TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAA
* * * *
8164352 AAAAGGTTTTTTTATTAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG-TTTCTAA
1 AAAA---TATTTT-TGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTTTTCTAA
* *
8164414 AAAATATTTTAG-GGAAAAGTTGAAAGTATGAATTTTCCTTG
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
8164455 TACAAAAGCA
Statistics
Matches: 239, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
57 27 0.11
58 100 0.42
59 13 0.05
60 15 0.06
61 37 0.15
62 44 0.18
63 3 0.01
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.38
Consensus pattern (58 bp):
AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAA
Done.