Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 34 of 117
Found at i:8626579 original size:12 final size:10
Alignment explanation
Indices: 8626529--8626588 Score: 50
Period size: 10 Copynumber: 5.5 Consensus size: 10
8626519 TTATCAAATC
*
8626529 AAAAAATTAA
1 AAAAAATAAA
8626539 AAAAAATGAAA
1 AAAAAAT-AAA
8626550 AGAGAAAA-AAA
1 A-A-AAAATAAA
8626561 TAAAAAATGAGAA
1 -AAAAAAT-A-AA
8626574 AAAAAATAAA
1 AAAAAATAAA
8626584 AAAAA
1 AAAAA
8626589 GCTCATAAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
10 18 0.43
11 8 0.19
12 10 0.24
13 6 0.14
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:8633226 original size:17 final size:18
Alignment explanation
Indices: 8633204--8633245 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
8633194 TTGCTATACT
* *
8633204 TTTTTTTTGCTTTTT-CA
1 TTTTTTTTACTTTTTAAA
8633221 TTTTTTTTACTTTTTAAA
1 TTTTTTTTACTTTTTAAA
8633239 TTTTTTT
1 TTTTTTT
8633246 AATTAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTTTACTTTTTAAA
Found at i:8634008 original size:24 final size:23
Alignment explanation
Indices: 8633980--8634032 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
8633970 AATGAGTTTT
*
8633980 TTTTTTTCTTTTTTGACTTTTACTC
1 TTTTTTT-ATTTTTGA-TTTTACTC
**
8634005 TTTTTTTATTTTTGATTTTTGTC
1 TTTTTTTATTTTTGATTTTACTC
8634028 TTTTT
1 TTTTT
8634033 AATAAAAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.44
24 7 0.28
25 7 0.28
ACGTcount: A:0.08, C:0.09, G:0.06, T:0.77
Consensus pattern (23 bp):
TTTTTTTATTTTTGATTTTACTC
Found at i:8634505 original size:18 final size:18
Alignment explanation
Indices: 8634484--8634518 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8634474 ACCCATTTCC
*
8634484 TATTTTTTACATTTTTTT
1 TATTTTTCACATTTTTTT
*
8634502 TATTTTTCATATTTTTT
1 TATTTTTCACATTTTTT
8634519 AGATTAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (18 bp):
TATTTTTCACATTTTTTT
Found at i:8634529 original size:27 final size:27
Alignment explanation
Indices: 8634479--8634531 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8634469 GGTTTACCCA
* **
8634479 TTTCCTATTTTTTACATTTTTTTTATT
1 TTTCATATTTTTTACATTAATTTTATT
*
8634506 TTTCATATTTTTTAGATTAATTTTAT
1 TTTCATATTTTTTACATTAATTTTAT
8634532 AAGAAAAGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTCATATTTTTTACATTAATTTTATT
Found at i:8639188 original size:17 final size:17
Alignment explanation
Indices: 8639155--8639188 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8639145 CATACCATGA
**
8639155 TTTATTTTTTATGATTT
1 TTTATTTTTTAAAATTT
8639172 TTTATTTTTTAAAATTT
1 TTTATTTTTTAAAATTT
8639189 GTTGAGCCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATTTTTTAAAATTT
Found at i:8641192 original size:31 final size:31
Alignment explanation
Indices: 8641137--8641217 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
8641127 GAGTAGGTTG
* *
8641137 CTGCATGCTACCTTTCTGTATAGTAAGTGCCTTT
1 CTGCGTGCTACCTTTC---ATAGTAAATGCCTTT
* *
8641171 TTGCGTGCTGCCTTTCATAGTAAATGCCTTT
1 CTGCGTGCTACCTTTCATAGTAAATGCCTTT
8641202 CTGCGTGCTACCTTTC
1 CTGCGTGCTACCTTTC
8641218 TTGTGTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 28 0.68
34 13 0.32
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.41
Consensus pattern (31 bp):
CTGCGTGCTACCTTTCATAGTAAATGCCTTT
Found at i:8645421 original size:213 final size:215
Alignment explanation
Indices: 8645020--8645454 Score: 743
Period size: 214 Copynumber: 2.0 Consensus size: 215
8645010 GTTATTGATC
*
8645020 ATTGTAATAATATCACAATCTTTTTTTTACATGGGTGCTTCTACCTTTATCTTTATTGTTAATTA
1 ATTGTAATAATATCACAATCTTTTTTTTACATGGGTGCTTCTACCTTTATATTTATTGTTAATTA
* * *
8645085 TAATTTGTTTCTTTTGTAATTATTCTTTTGTGTAGATTTGTTGAAAAACAATATTAGCCCAATGT
66 TAATTTGTTTCTTTAGTAATTATTCTTTTGTGTAGATTTGTTGAAAAACAATATGAGCCCAATAT
* *
8645150 TCATTTGAACATATAATATTATGAAAGCAGTATATGTATTGTTGTTGGTTTGTTGTAACTTATTT
131 TCATTTGAACACATAATATTATGAAAGCAGCATATGTATTGTTGTTGGTTTGTTGTAACTTATTT
8645215 GTAGACTTATTAGCTTGGAT
196 GTAGACTTATTAGCTTGGAT
*
8645235 ATTGTAATAATATC-TAATCTTTTTTTTACATGGGTGCTTCTA-CTATTATATTTATTGTTAATT
1 ATTGTAATAATATCACAATCTTTTTTTTACATGGGTGCTTCTACCT-TTATATTTATTGTTAATT
*
8645298 ATAATTTGTTTCTTTAGTAATTATTCTTTTGTGTAGGTTTGTTGAAAAACAATATGAG-CCAATA
65 ATAATTTGTTTCTTTAGTAATTATTCTTTTGTGTAGATTTGTTGAAAAACAATATGAGCCCAATA
*
8645362 TTCATTTGAAGACATAATATTATGAAAGCAGCATATGTATTGTTGTTGGTTTGTTGTAACTTATT
130 TTCATTTGAACACATAATATTATGAAAGCAGCATATGTATTGTTGTTGGTTTGTTGTAACTTATT
*
8645427 TGTAGACTTATTTGCTTGGAT
195 TGTAGACTTATTAGCTTGGAT
8645448 ATT-TAAT
1 ATTGTAAT
8645455 TTCTTTCAAT
Statistics
Matches: 209, Mismatches: 10, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
212 4 0.02
213 92 0.44
214 99 0.47
215 14 0.07
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (215 bp):
ATTGTAATAATATCACAATCTTTTTTTTACATGGGTGCTTCTACCTTTATATTTATTGTTAATTA
TAATTTGTTTCTTTAGTAATTATTCTTTTGTGTAGATTTGTTGAAAAACAATATGAGCCCAATAT
TCATTTGAACACATAATATTATGAAAGCAGCATATGTATTGTTGTTGGTTTGTTGTAACTTATTT
GTAGACTTATTAGCTTGGAT
Found at i:8650752 original size:11 final size:10
Alignment explanation
Indices: 8650737--8650771 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
8650727 TTTTATCTCT
8650737 TTTTTATTTA
1 TTTTTATTTA
8650747 TGTTTTATTTA
1 T-TTTTATTTA
8650758 TTTATTATTTA
1 TTT-TTATTTA
8650769 TTT
1 TTT
8650772 AATCAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.13
11 20 0.87
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:8650752 original size:22 final size:22
Alignment explanation
Indices: 8650727--8650769 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8650717 CATTTGATTT
* *
8650727 TTTTATCTCTTTTTTATTTATG
1 TTTTATCTATTTATTATTTATG
*
8650749 TTTTATTTATTTATTATTTAT
1 TTTTATCTATTTATTATTTAT
8650770 TTAATCAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATCTATTTATTATTTATG
Found at i:8650757 original size:15 final size:15
Alignment explanation
Indices: 8650739--8650772 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8650729 TTATCTCTTT
8650739 TTTATTTATGT-TTTA
1 TTTATTTAT-TATTTA
8650754 TTTATTTATTATTTA
1 TTTATTTATTATTTA
8650769 TTTA
1 TTTA
8650773 ATCAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:8651466 original size:33 final size:35
Alignment explanation
Indices: 8651403--8651476 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 35
8651393 GTTATAAATA
* *
8651403 AATATATGTTTTATTATTAATTTAATTT-TATATTT
1 AATATATGTATTATTATTAATTAAATTTAT-TATTT
8651438 ATATATATGTATTA-TATTAA-TAAATTTATTATTT
1 A-ATATATGTATTATTATTAATTAAATTTATTATTT
8651472 AATAT
1 AATAT
8651477 TTTCATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 4 0.11
34 12 0.34
35 8 0.23
36 11 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (35 bp):
AATATATGTATTATTATTAATTAAATTTATTATTT
Found at i:8652862 original size:16 final size:16
Alignment explanation
Indices: 8652838--8652868 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8652828 ACACCAAATA
8652838 AATCCCACTTGAAAAG
1 AATCCCACTTGAAAAG
*
8652854 AATCTCACTTGAAAA
1 AATCCCACTTGAAAA
8652869 AGTCCCTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (16 bp):
AATCCCACTTGAAAAG
Found at i:8655491 original size:147 final size:146
Alignment explanation
Indices: 8655224--8655664 Score: 735
Period size: 147 Copynumber: 3.0 Consensus size: 146
8655214 TGAAATTTAA
* * *
8655224 TTATAAATCCCTTTGTTTGTAAGAAATAAAATTAGTTTTGAAAAAATCATTTATTTTGAAATATT
1 TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTT-AAAAAATAATTTATTTAGAAATATT
8655289 ATGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATA
65 ATGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATA
8655354 GTCTTTCCATTTAAGAT
130 GTCTTTCCATTTAAGAT
*
8655371 TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTTAAAAAAATAATTTATTTAGGAATATT
1 TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTT-AAAAAATAATTTATTTAGAAATATT
*
8655436 ATGAAAATCTTTAAATTAAATAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATA
65 ATGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATA
8655501 GTCTTTCCATTTAAGAT
130 GTCTTTCCATTTAAGAT
*
8655518 TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTT-AAAAA-AA-TCATTTAGAAATATTA
1 TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTTAAAAAATAATTTATTTAGAAATATTA
** * *
8655580 TGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAACATAAAAGTAGAATTCGAATATAG
66 TGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATAG
* *
8655645 TCTTTTCATGTAAGAT
131 TCTTTCCATTTAAGAT
8655661 TTAT
1 TTAT
8655665 CAAAACATCC
Statistics
Matches: 279, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
143 92 0.33
144 2 0.01
145 5 0.02
147 180 0.65
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (146 bp):
TTATAATTCCCTTTGTTTGTAAGAAATAAAATTAGTTTTAAAAAATAATTTATTTAGAAATATTA
TGAAAATCTTTAAATTAAAGAAATACCTTCAAAGTCTTCAGTATAAAGGTAGAATTCGAAGATAG
TCTTTCCATTTAAGAT
Found at i:8656722 original size:14 final size:14
Alignment explanation
Indices: 8656703--8656732 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8656693 TTGTTACTTT
8656703 TATTATATATTTTA
1 TATTATATATTTTA
8656717 TATTATATATTTTA
1 TATTATATATTTTA
8656731 TA
1 TA
8656733 AGATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTATATATTTTA
Found at i:8659960 original size:167 final size:159
Alignment explanation
Indices: 8659341--8660182 Score: 584
Period size: 159 Copynumber: 5.2 Consensus size: 159
8659331 AGAAATACAT
* * * * * *
8659341 TTTTACAATAGAAGAAGTTTGAATGAGTTGAAAGAATAACTTTAAAACCAAACAAAATGAAAGGG
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAACAACTTTGAAACCAAAAAAAATGAAA--G
* * *
8659406 AAAAACAT--TTTCTTTTAGTAAATGAAAGCAATAATATCTTGTATCCCCACAT--GAACTATCT
64 AAAAAAATGCTTT-TTTTGGTAAATGAAAGCAATAATATCTTGTAT-CCTA-ATGGGAACTATCT
* * * * *
8659467 ATTTTGCTTAGTATTTTGTGAAAAAAATTTATGC
126 ATTTTGCTTGGTACTTTATGAAAAAAACTTATAC
** * * * * * * * *
8659501 TTTTATGATGAAGGAAATTTGAACAAGTT-AAAAAATCATCTTTGAAATCAAACAAAAT-AAATA
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAA-CAACTTTGAAACCAAAAAAAATGAAAGA
* * * ** * ** * *
8659564 GGAGAAATACTTTTTTTGGTAAACAAAAGCAACAATATAGTGTA-CCTTAATGGTAACAAAT-TA
65 -AAAAAATGCTTTTTTTGGTAAATGAAAGCAATAATATCTTGTATCC-TAATGGGAAC-TATCTA
* ** * * **
8659627 TTTTGCCTAATAATTTGTGAAATGAACTTATAC
127 TTTTGCTTGGTACTTTATGAAAAAAACTTATAC
** * ** * * * * *
8659660 TTTTATGATTGACAAAGTTTAAATGAGTTAAAAGGACCAACTTTGAAATC-AAAAAAATGAAA-A
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAA-GAACAACTTTGAAACCAAAAAAAATGAAAGA
* * * * * *
8659723 GGAGAAATGCTTCTTTTTTTTTTATGTAAATGAAAGTAACAATATCTTATA-CCATAATGGGAAC
65 -AAAAAATG---C---TTTTTTT-GGTAAATGAAAGCAATAATATCTTGTATCC-TAATGGGAAC
8659787 TATCTATTTTGCTTGGTACTTTATGAAAAAAAAAAAAACTTATAC
121 TATCTATTTTGCTTGGTACTTTATG------AAAAAAACTTATAC
*
8659832 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAATAACTTTGAAA-CAAAATAAAATGAAAAG
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAACAACTTTGAAACCAAAA-AAAATG-AAAG
* *
8659896 AAAAAAAATGCTTTTTTTGGTAAATGAAAGCAATAATATATTGTATCCTAGTGGGAACTATCTAT
64 -AAAAAAATGCTTTTTTTGGTAAATGAAAGCAATAATATCTTGTATCCTAATGGGAACTATCTAT
* * *
8659961 TTTGCTTGGTACTATATGAAAAGAACTTACAC
128 TTTGCTTGGTACTTTATGAAAAAAACTTATAC
* * * * **
8659993 TTTTACAATGGAGGAAATTTG-A--AGTT-AAGGACCAACTTTGAAACCAGAAAAAATGAAAGGG
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAACAACTTTGAAACCAAAAAAAATGAAAGAA
* ** * *
8660054 AAAAATGCTTTTTTCGGTAAACAAAAGCAATAATATCTTGTAT-TTCAATGGGAATTATCTATTT
66 AAAAATGCTTTTTTTGGTAAATGAAAGCAATAATATCTTGTATCCT-AATGGGAACTATCTATTT
* * *
8660118 TGCTTGGTATTTTGTGAAAAAAATTTATAC
130 TGCTTGGTACTTTATGAAAAAAACTTATAC
* **
8660148 CTTTATGATGGAGGAAGTTTGAACGAGTTGAAAGA
1 TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGA
8660183 CCAAAGATTA
Statistics
Matches: 536, Mismatches: 109, Indels: 75
0.74 0.15 0.10
Matches are distributed among these distances:
154 1 0.00
155 96 0.18
156 5 0.01
157 25 0.05
158 17 0.03
159 105 0.20
160 63 0.12
161 33 0.06
162 1 0.00
165 9 0.02
166 47 0.09
167 55 0.10
168 9 0.02
170 1 0.00
171 16 0.03
172 43 0.08
173 3 0.01
174 6 0.01
175 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.33
Consensus pattern (159 bp):
TTTTACAATGGAGGAAGTTTGAACGAGTTGAAAGAACAACTTTGAAACCAAAAAAAATGAAAGAA
AAAAATGCTTTTTTTGGTAAATGAAAGCAATAATATCTTGTATCCTAATGGGAACTATCTATTTT
GCTTGGTACTTTATGAAAAAAACTTATAC
Found at i:8660081 original size:155 final size:161
Alignment explanation
Indices: 8659778--8660182 Score: 432
Period size: 155 Copynumber: 2.5 Consensus size: 161
8659768 CTTATACCAT
* *
8659778 AATGGGAACTATCTATTTTGCTTGGTACTTTATGAAAAAAAAAAAAACTTATACTTTTACAATGG
1 AATGGGAACTATCTATTTTGCTTGGTACTATATG-----AAAAAAAACTTACACTTTTACAATGG
* *
8659843 AGGAAGTTTGAACGAGTTGAAAGAATAACTTTGAAACAAAATAAAATGAAAAGAAAAAAAATGCT
61 AGGAAATTTGAAC-AGTTGAAAGAACAACTTTGAAACAAAATAAAATGAAAAGAAAAAAAATGCT
* **
8659908 TTTTTTGGTAAATGAAAGCAATAATATATTGTATC-C
125 TTTTTCGGTAAACAAAAGCAATAATATATTGTATCTC
* *
8659944 TAGTGGGAACTATCTATTTTGCTTGGTACTATATG-AAAAGAACTTACACTTTTACAATGGAGGA
1 -AATGGGAACTATCTATTTTGCTTGGTACTATATGAAAAAAAACTTACACTTTTACAATGGAGGA
* * * **
8660008 AATTTG-A-AGTT-AAGGACCAACTTTGAAACCAGAA-AAAATG-AAAG-GGAAAAATGCTTTTT
65 AATTTGAACAGTTGAAAGAACAACTTTGAAA-CAAAATAAAATGAAAAGAAAAAAAATGCTTTTT
* *
8660067 TCGGTAAACAAAAGCAATAATATCTTGTATTTC
129 TCGGTAAACAAAAGCAATAATATATTGTATCTC
* * * * * * * **
8660100 AATGGGAATTATCTATTTTGCTTGGTATTTTGTG-AAAAAAATTTATACCTTTATGATGGAGGAA
1 AATGGGAACTATCTATTTTGCTTGGTACTATATGAAAAAAAACTTACACTTTTACAATGGAGGAA
*
8660164 GTTTGAACGAGTTGAAAGA
66 ATTTGAAC-AGTTGAAAGA
8660183 CCAAAGATTA
Statistics
Matches: 203, Mismatches: 29, Indels: 20
0.81 0.12 0.08
Matches are distributed among these distances:
155 96 0.47
156 6 0.03
157 20 0.10
158 12 0.06
159 4 0.02
160 1 0.00
161 32 0.16
167 32 0.16
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.32
Consensus pattern (161 bp):
AATGGGAACTATCTATTTTGCTTGGTACTATATGAAAAAAAACTTACACTTTTACAATGGAGGAA
ATTTGAACAGTTGAAAGAACAACTTTGAAACAAAATAAAATGAAAAGAAAAAAAATGCTTTTTTC
GGTAAACAAAAGCAATAATATATTGTATCTC
Found at i:8660965 original size:29 final size:32
Alignment explanation
Indices: 8660930--8660997 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 32
8660920 GTGTTATAAA
8660930 TTATATTGATAAAAATATTAAA-TA-TATTTT
1 TTATATTGATAAAAATATTAAATTATTATTTT
** * *
8660960 TT-TATTTTTTAAAATTTTAAATTATTATTTT
1 TTATATTGATAAAAATATTAAATTATTATTTT
8660991 TTATATT
1 TTATATT
8660998 ATTTTCATGC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 15 0.48
30 4 0.13
31 8 0.26
32 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (32 bp):
TTATATTGATAAAAATATTAAATTATTATTTT
Found at i:8663439 original size:21 final size:21
Alignment explanation
Indices: 8663415--8663490 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 21
8663405 ATTAATATAA
8663415 TATTAAATATTAAAAATTATT
1 TATTAAATATTAAAAATTATT
**
8663436 TATTATTTATTAAAAAATATTATT
1 TATTAAATATT--AAAA-ATTATT
8663460 TATTAATATAACCATTAAAAATTATT
1 TATTAA-AT----ATTAAAAATTATT
8663486 TATTA
1 TATTA
8663491 TTAAAATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
21 9 0.21
23 4 0.09
24 11 0.26
25 1 0.02
26 11 0.26
27 4 0.09
29 3 0.07
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTAAATATTAAAAATTATT
Found at i:8683079 original size:2 final size:2
Alignment explanation
Indices: 8683074--8683100 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8683064 CTTATATATA
8683074 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
8683101 ATGTATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8688426 original size:73 final size:73
Alignment explanation
Indices: 8688307--8688452 Score: 215
Period size: 73 Copynumber: 2.0 Consensus size: 73
8688297 CTCAATGTAC
*
8688307 CTGGACAGGAAGTGGAAAAAGAGTAGTCAACCTTGCCAAGAGGACTAGAAG-GAGG-TCAGCTTA
1 CTGGACAGGAAGTGGAAAAAGAGTAGTCAACCTTACCAAGAGGACTA-AAGAGAGGCTCAGCTTA
8688370 TGTGACCTGT
65 TG-GACCTGT
* * * *
8688380 CTGGACAGGAAGTGGAAAATGAGTGGTCAACCTTACCAAGAGGACTACAGAGAGGCTCAGCTTCT
1 CTGGACAGGAAGTGGAAAAAGAGTAGTCAACCTTACCAAGAGGACTAAAGAGAGGCTCAGCTTAT
8688445 GGACCTGT
66 GGACCTGT
8688453 TTCAATCGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
72 2 0.03
73 55 0.83
74 9 0.14
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.19
Consensus pattern (73 bp):
CTGGACAGGAAGTGGAAAAAGAGTAGTCAACCTTACCAAGAGGACTAAAGAGAGGCTCAGCTTAT
GGACCTGT
Found at i:8690269 original size:27 final size:28
Alignment explanation
Indices: 8690238--8690290 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
8690228 AGAATTAGTT
*
8690238 ATTCAATTATTTATTAATTT-TTTATGC
1 ATTCAATTATTTAATAATTTGTTTATGC
*
8690265 ATTCAATTTTTTAATAATTTGTTTAT
1 ATTCAATTATTTAATAATTTGTTTAT
8690291 TATAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (28 bp):
ATTCAATTATTTAATAATTTGTTTATGC
Found at i:8690771 original size:15 final size:16
Alignment explanation
Indices: 8690738--8690771 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8690728 GGGGCATGAG
*
8690738 AAATTAAAAAATAATA
1 AAATTAAAAAATAAGA
8690754 AAATTAAAAAA-AAGA
1 AAATTAAAAAATAAGA
8690769 AAA
1 AAA
8690772 ATTATAGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (16 bp):
AAATTAAAAAATAAGA
Found at i:8690772 original size:16 final size:16
Alignment explanation
Indices: 8690738--8690775 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8690728 GGGGCATGAG
*
8690738 AAATTAAAAAATAATA
1 AAATTAAAAAATAAAA
8690754 AAATTAAAAAA-AAGAA
1 AAATTAAAAAATAA-AA
8690770 AAATTA
1 AAATTA
8690776 TAGTACAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AAATTAAAAAATAAAA
Found at i:8694133 original size:22 final size:22
Alignment explanation
Indices: 8694103--8694147 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8694093 CTGCTCGGAG
8694103 AGCTCTTTCTAAAAATAAAGGC
1 AGCTCTTTCTAAAAATAAAGGC
*
8694125 AGCTTTTTCTAAAAATAAAGGC
1 AGCTCTTTCTAAAAATAAAGGC
8694147 A
1 A
8694148 AAGATTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (22 bp):
AGCTCTTTCTAAAAATAAAGGC
Found at i:8695457 original size:57 final size:58
Alignment explanation
Indices: 8695259--8695684 Score: 428
Period size: 57 Copynumber: 7.3 Consensus size: 58
8695249 TGATTCTTTT
* * *
8695259 AAAATAATTTTTTTAAAAAATATATTTT-TGAAGGAAAGTTGAAAGTATCAA-TTTTCTTTGA
1 AAAATAAATTTTCTAAAAAATAT-TTTTGGGAA--AAAGTTGAAAGTATCAATTTTTC-TT-A
**
8695320 AAGTAA-AAATTTTAAAAAAAATATTTTTGAAGG-AAAA-TTGAAAGTATCAA-TTTTCTTTA
1 AA--AATAAATTTTCTAAAAAATATTTTTG--GGAAAAAGTTGAAAGTATCAATTTTTC-TTA
* *
8695379 AAAATAAAAATTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAAT-AAATTTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTA
* *
8695438 AAAAT-AATTTTCTAAAAAATATTTTTGAGGAAAAAG-TAAAAGTATCAATTTTTCTTG
1 AAAATAAATTTTCTAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTA
* * * *
8695495 AAAATAAAGTTTT-TAAAAAATTTTTTTGAGAAGAAGTTGAAAGTATCAA-TTTCCTTTA
1 AAAATAAA-TTTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC-TTA
* * *
8695553 AAAATAAATTTTTTAAGAATATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTA
1 AAAATAAATTTTCTAA-AAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTA
* * * * *
8695612 AAATTAAAGTTTCAAAAAAATA-TTTTGGGAAAAAGTTGGAAGTACCAATTTTTCTTA
1 AAAATAAATTTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTA
8695669 AAAA-AAATATTT-TAAA
1 AAAATAAAT-TTTCTAAA
8695685 GAAAAGTTGA
Statistics
Matches: 315, Mismatches: 31, Indels: 43
0.81 0.08 0.11
Matches are distributed among these distances:
56 6 0.02
57 102 0.32
58 57 0.18
59 92 0.29
60 30 0.10
61 9 0.03
62 15 0.05
63 3 0.01
64 1 0.00
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (58 bp):
AAAATAAATTTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTA
Found at i:8695579 original size:174 final size:174
Alignment explanation
Indices: 8695257--8695684 Score: 518
Period size: 174 Copynumber: 2.4 Consensus size: 174
8695247 AATGATTCTT
*
8695257 TTAAAATAATTTTTTTAAAAAATATATTTTTGAAGG--AAAGTTGAAAGTATCAA-TTTTCTTTG
1 TTAAAATAA-TTTTCT-AAAAA-ATATTTTTG-AGGAAAAAGTTGAAAGTATCAATTTTTC-TTG
* * *
8695319 AAAGTAAAAATTTTAAAAAAAATATTTTTGAAGGAAAATTGAAAGTATCAATTTTCTTTAAAAAT
61 AAAAT-AAAATTTT-TAAAAAATATTTTTGAAGGAAAATTGAAAGTATCAATTTCCTTTAAAAAT
*
8695384 AAAAATTTCTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC
124 AAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
*
8695435 TTGAAAATAATTTTCTAAAAAATATTTTTGAGGAAAAAG-TAAAAGTATCAATTTTTCTTGAAAA
1 TT-AAAATAATTTTCTAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAA
* *
8695499 TAAAGTTTTTAAAAAATTTTTTTG-A-GAAGAAGTTGAAAGTATCAATTTCCTTTAAAAAT-AAA
65 TAAAATTTTTAAAAAATATTTTTGAAGGAA-AA-TTGAAAGTATCAATTTCCTTTAAAAATAAAA
* * *
8695561 TTTTTTAAGAATATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
128 ATTTCTAA-AAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
* * * *
8695609 TTAAAATTAAAGTTTCAAAAAAATA-TTTTG-GGAAAAAGTTGGAAGTACCAATTTTTCTT-AAA
1 TTAAAA-T-AATTTTCTAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAA
8695671 A-AAAATATTTTAAA
64 ATAAAAT-TTTTAAA
8695685 GAAAAGTTGA
Statistics
Matches: 222, Mismatches: 17, Indels: 27
0.83 0.06 0.10
Matches are distributed among these distances:
172 7 0.03
173 35 0.16
174 101 0.45
175 24 0.11
176 27 0.12
177 14 0.06
178 7 0.03
179 7 0.03
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (174 bp):
TTAAAATAATTTTCTAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT
AAAATTTTTAAAAAATATTTTTGAAGGAAAATTGAAAGTATCAATTTCCTTTAAAAATAAAAATT
TCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
Found at i:8695687 original size:116 final size:115
Alignment explanation
Indices: 8695293--8695688 Score: 439
Period size: 116 Copynumber: 3.4 Consensus size: 115
8695283 TTTTTGAAGG
* * *
8695293 AAAGTTGAAAGTATCAATTTTCTTTGAAAGTAAAAATTTTAAAAAAAATATTTTTGAAGGAAAA-
1 AAAGTTGAAAGTATCAATTTTCTTT-AAA--AAAAATTTTTAAAGAAATATTTTTG-AGAAAAAG
* * *
8695357 TTGAAAGTATCAA-TTTTCTTTAAAAATAAAAATTTCTAAAAAATATTTTTGGGAA
62 TTGAAAGTATCAATTTTTC-TTAAAAATTAAAGTTTCAAAAAAATA-TTTTGGGAA
* *
8695412 AAAGTTGAAAGTATCAATTTT-TCTTGAAAATAATTTTCTAAA-AAATATTTTTGAGGAAAAAG-
1 AAAGTTGAAAGTATCAATTTTCT-TTAAAAAAAATTTT-TAAAGAAATATTTTTGA-GAAAAAGT
* * * * * *
8695474 TAAAAGTATCAATTTTTCTTGAAAA-TAAAGTTTTTAAAAAATTTTTTTGAGAA
63 TGAAAGTATCAATTTTTCTTAAAAATTAAAG-TTTCAAAAAAATATTTTGGGAA
* * *
8695527 GAAGTTGAAAGTATCAATTTCCTTTAAAAATAAATTTTTTAAGAATATATTTTTGAGAAAAAGTT
1 AAAGTTGAAAGTATCAATTTTCTTTAAAAA-AAATTTTTAAAGAA-ATATTTTTGAGAAAAAGTT
8695592 GAAAGTATCAATTTTTCTT-AAAATTAAAGTTTCAAAAAAATATTTTGGGAA
64 GAAAGTATCAATTTTTCTTAAAAATTAAAGTTTCAAAAAAATATTTTGGGAA
* *
8695643 AAAGTTGGAAGTACCAATTTT-TCTTAAAAAAAATATTTTAAAGAAA
1 AAAGTTGAAAGTATCAATTTTCT-TTAAAAAAAAT-TTTTAAAGAAA
8695689 AGTTGAAAGT
Statistics
Matches: 235, Mismatches: 28, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
115 46 0.20
116 121 0.51
117 42 0.18
118 3 0.01
119 23 0.10
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (115 bp):
AAAGTTGAAAGTATCAATTTTCTTTAAAAAAAATTTTTAAAGAAATATTTTTGAGAAAAAGTTGA
AAGTATCAATTTTTCTTAAAAATTAAAGTTTCAAAAAAATATTTTGGGAA
Found at i:8696827 original size:235 final size:237
Alignment explanation
Indices: 8696509--8696959 Score: 570
Period size: 235 Copynumber: 1.9 Consensus size: 237
8696499 TTGTTTTTTT
*
8696509 TTTTATTAAATTTAGAATTATCATAACTCTTTTTTAGTACATTAAGACACTTCTTACCTATTTTA
1 TTTTATTAAATTTAAAATTATCATAACTCTTTTTTAGTACATTAAGACACTTCTTACCTATTTTA
** ** * * ** *
8696574 TGTCAAATAACATGAATTTTACATTTTTTCTCACTTGTTTGTTTTACCTATTTGA-TTTTTAATT
66 TACCAAATAACATGAATTTTACATTTCGTATCACTTATTTGCATTACCTATTT-ATTTTTTAATC
* **
8696638 TTTAGCTA-TTTCCTTATATATTTACTAAA-ATAATAATTAATTAAAATTTT-CATTATTGACTT
130 TTTAGCTATTTTCCTTATATAGTTA-TAAATATAATAATTAATTAAAATTTTACATTACCGACTT
8696700 AATTATTTACATTACAATATTATCGTTTCATGGCTATTTTTACA
194 AATTATTTACATTACAATATTATCGTTTCATGGCTATTTTTACA
** * * * * *
8696744 TTTTATTACGTTTAAAATTATCATAATTCTTTTTTAGTATATTATGATACTTTTTA-CTAATTTT
1 TTTTATTAAATTTAAAATTATCATAACTCTTTTTTAGTACATTAAGACACTTCTTACCT-ATTTT
** * * *
8696808 ATACCAAATATTATGAATTTTTCATTTCGTATCTCTTATTTGCATTGCCTATTTATTTTTTAATC
65 ATACCAAATAACATGAATTTTACATTTCGTATCACTTATTTGCATTACCTATTTATTTTTTAATC
* *
8696873 TTTAGCTATTTTCTTTATATAGTTATAAATATAATAATTAATTAAAATTTTATATTACCGACTTA
130 TTTAGCTATTTTCCTTATATAGTTATAAATATAATAATTAATTAAAATTTTACATTACCGACTTA
** *
8696938 ATTATTTAGGTTGCAATATTAT
195 ATTATTTACATTACAATATTAT
8696960 TTTTTTACAA
Statistics
Matches: 181, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
234 3 0.02
235 114 0.63
236 35 0.19
237 29 0.16
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (237 bp):
TTTTATTAAATTTAAAATTATCATAACTCTTTTTTAGTACATTAAGACACTTCTTACCTATTTTA
TACCAAATAACATGAATTTTACATTTCGTATCACTTATTTGCATTACCTATTTATTTTTTAATCT
TTAGCTATTTTCCTTATATAGTTATAAATATAATAATTAATTAAAATTTTACATTACCGACTTAA
TTATTTACATTACAATATTATCGTTTCATGGCTATTTTTACA
Found at i:8697078 original size:232 final size:233
Alignment explanation
Indices: 8696510--8697080 Score: 532
Period size: 235 Copynumber: 2.4 Consensus size: 233
8696500 TGTTTTTTTT
* * * * * * * *
8696510 TTTATTAAATTTAGAATTATCATAACTCTTTTTTAGTACATTAAGACACTTCTT-ACCTATTTTA
1 TTTATT-AGTTTAAAATTATCATAATTCTTTTTTAATATATTATGACAATT-TTAACCAATTTTA
** * * * * * ** *
8696574 TGTCAAATAACATGAATTTTACATTTTTTCTCACTTGTTTGTTTTACCTATTTGATTTTTAATTT
64 CATCAAATTATATGAATTTTACATTTTTTATCTCTTATTTGCATTACCTATTTGATTTTTAATCT
* **
8696639 TTAGCTATTTCCTTATATATTTACTAAAATAATAATTAATTAAAATTTTCATTATTGACTTAATT
129 TTAGCTATTTCCTTATATAGTTACTAAAATAATAATTAATTAAAATTTTCATTACCGACTTAATT
***
8696704 ATTTACATTACAATATTATCGTTTCATGGCTATTTTTACA
194 ATTTACATTACAATATTATCGTTTCACAACTATTTTTACA
* * * * *
8696744 TTTTATTACGTTTAAAATTATCATAATTCTTTTTTAGTATATTATGATACTTTTTACTAATTTTA
1 -TTTATTA-GTTTAAAATTATCATAATTCTTTTTTAATATATTATGACAATTTTAACCAATTTTA
* * * ** *
8696809 TACCAAA-TATTATGAATTTTTCATTTCGTATCTCTTATTTGCATTGCCTATTT-ATTTTTTAAT
64 CATCAAATTA-TATGAATTTTACATTTTTTATCTCTTATTTGCATTACCTATTTGA-TTTTTAAT
* *
8696872 CTTTAGCTATTTTCTTTATATAGTTA-TAAATATAATAATTAATTAAAATTTTATATTACCGACT
127 CTTTAGCTA-TTTCCTTATATAGTTACTAAA-ATAATAATTAATTAAAATTTT-CATTACCGACT
** * ** * *
8696936 TAATTATTTAGGTTGCAATATTATTTTTTTACAATTATTTTTACA
189 TAATTATTTACATTACAATATTATCGTTTCACAACTATTTTTACA
* * *
8696981 -TTA-T-GTTTAGAATTATCATAGTT-TTTTCTTAATTTATTACT-ACAATTCTTAACCAA-TTT
1 TTTATTAGTTTAAAATTATCATAATTCTTTT-TTAATATATTA-TGACAATT-TTAACCAATTTT
*
8697040 ACATCAAATTATATGAATTTTACATTTTTTTTCTCTTATTT
63 ACATCAAATTATATGAATTTTACATTTTTTATCTCTTATTT
8697081 TAATGTTTTT
Statistics
Matches: 274, Mismatches: 51, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
231 4 0.01
232 65 0.24
233 9 0.03
234 6 0.02
235 112 0.41
236 35 0.13
237 43 0.16
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.52
Consensus pattern (233 bp):
TTTATTAGTTTAAAATTATCATAATTCTTTTTTAATATATTATGACAATTTTAACCAATTTTACA
TCAAATTATATGAATTTTACATTTTTTATCTCTTATTTGCATTACCTATTTGATTTTTAATCTTT
AGCTATTTCCTTATATAGTTACTAAAATAATAATTAATTAAAATTTTCATTACCGACTTAATTAT
TTACATTACAATATTATCGTTTCACAACTATTTTTACA
Found at i:8697578 original size:16 final size:18
Alignment explanation
Indices: 8697559--8697596 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
8697549 AAGATTCACA
8697559 AAAACA-TAAAAAAAT-T
1 AAAACATTAAAAAAATCT
8697575 AAAA-ATTAAAAAAATCT
1 AAAACATTAAAAAAATCT
8697592 AAAAC
1 AAAAC
8697597 TTTTTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 13 0.68
17 5 0.26
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAACATTAAAAAAATCT
Found at i:8697624 original size:18 final size:19
Alignment explanation
Indices: 8697580--8697646 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
8697570 AAATTAAAAA
8697580 TTAAAAAAATCTAAAACTT
1 TTAAAAAAATCTAAAACTT
** * *
8697599 TTTGAAAAATTTGAAA-TT
1 TTAAAAAAATCTAAAACTT
*
8697617 TTAAAAAAAAATCTAAAATGTT
1 TT--AAAAAAATCTAAAA-CTT
8697639 TTAAAAAA
1 TTAAAAAA
8697647 TATGAAAATG
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
18 4 0.11
19 12 0.33
20 16 0.44
22 4 0.11
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (19 bp):
TTAAAAAAATCTAAAACTT
Found at i:8697635 original size:20 final size:21
Alignment explanation
Indices: 8697582--8697646 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 21
8697572 ATTAAAAATT
8697582 AAAAAAATCTAAAACTTTT--
1 AAAAAAATCTAAAACTTTTAA
** * *
8697601 TGAAAAATTTGAAA-TTTTAA
1 AAAAAAATCTAAAACTTTTAA
*
8697621 AAAAAAATCTAAAATGTTTTAA
1 AAAAAAATCTAAAA-CTTTTAA
8697643 AAAA
1 AAAA
8697647 TATGAAAATG
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
18 4 0.12
19 10 0.29
20 10 0.29
22 10 0.29
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (21 bp):
AAAAAAATCTAAAACTTTTAA
Found at i:8697663 original size:39 final size:37
Alignment explanation
Indices: 8697582--8697698 Score: 119
Period size: 39 Copynumber: 3.1 Consensus size: 37
8697572 ATTAAAAATT
* * *
8697582 AAAAAAATCTAAAACTTTTTGAAAAATTTGAAATTTTAA
1 AAAAAAATCTAAAA-TTTTTGAAAAATATGAAAATGT-A
* *
8697621 AAAAAAATCTAAAATGTTTTAAAAAATATGAAAATGTC
1 AAAAAAATCTAAAAT-TTTTGAAAAATATGAAAATGTA
* * * *
8697659 AAAAAATTTTAAAATTTTTGAAAAATA-AAAAATTTA
1 AAAAAAATCTAAAATTTTTGAAAAATATGAAAATGTA
8697695 AAAA
1 AAAA
8697699 TCTAAAGCAT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
36 10 0.15
37 11 0.17
38 14 0.21
39 31 0.47
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (37 bp):
AAAAAAATCTAAAATTTTTGAAAAATATGAAAATGTA
Found at i:8697682 original size:20 final size:20
Alignment explanation
Indices: 8697591--8697683 Score: 52
Period size: 20 Copynumber: 4.8 Consensus size: 20
8697581 TAAAAAAATC
8697591 TAAAACTTTTTG-AAAAA-TT
1 TAAAA-TTTTTGAAAAAATTT
* ** * *
8697610 TGAAATTTTAAAAAAAAATC
1 TAAAATTTTTGAAAAAATTT
*
8697630 TAAAATGTTTT-AAAAAATAT
1 TAAAAT-TTTTGAAAAAATTT
* * *
8697650 GAAAA--TGTCAAAAAATTT
1 TAAAATTTTTGAAAAAATTT
8697668 TAAAATTTTTGAAAAA
1 TAAAATTTTTGAAAAA
8697684 TAAAAAATTT
Statistics
Matches: 53, Mismatches: 15, Indels: 11
0.67 0.19 0.14
Matches are distributed among these distances:
17 2 0.04
18 16 0.30
19 9 0.17
20 23 0.43
21 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (20 bp):
TAAAATTTTTGAAAAAATTT
Found at i:8697731 original size:19 final size:20
Alignment explanation
Indices: 8697709--8697754 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8697699 TCTAAAGCAT
8697709 TAAAAAAGTTAT-AAAAAAA
1 TAAAAAAGTTATCAAAAAAA
* *
8697728 TAAAAAAGTTTTCTAAAAAA
1 TAAAAAAGTTATCAAAAAAA
8697748 TAAAAAA
1 TAAAAAA
8697755 ATTAAGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
TAAAAAAGTTATCAAAAAAA
Found at i:8697877 original size:19 final size:18
Alignment explanation
Indices: 8697853--8697909 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
8697843 TCAGAATAAA
8697853 AAAAATTTGTAATTTTTTT
1 AAAAATTT-TAATTTTTTT
* * *
8697872 AAAAATTTTTATATTTTC
1 AAAAATTTTAATTTTTTT
* *
8697890 AAAAAATTTAAATTTTTT
1 AAAAATTTTAATTTTTTT
8697908 AA
1 AA
8697910 TTTAAAAATT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
18 22 0.73
19 8 0.27
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
AAAAATTTTAATTTTTTT
Found at i:8697906 original size:18 final size:18
Alignment explanation
Indices: 8697852--8697906 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
8697842 TTCAGAATAA
*
8697852 AAAAAATTTGTAATTTTTT
1 AAAAAATTT-TAATTTTTC
* *
8697871 TAAAAATTTTTATATTTTC
1 AAAAAATTTTAAT-TTTTC
*
8697890 AAAAAATTTAAATTTTT
1 AAAAAATTTTAATTTTT
8697907 TAATTTAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
AAAAAATTTTAATTTTTC
Found at i:8698020 original size:21 final size:21
Alignment explanation
Indices: 8697960--8698029 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
8697950 GAAAATTTTG
**
8697960 TTTTTATTAAAATTTTCATTTTT
1 TTTTTATTAAAATTTT--TTGAT
* *
8697983 TTATTTTTTAGAATTTTTTGAT
1 TT-TTTATTAAAATTTTTTGAT
**
8698005 TTTTTATTAAAATTTTGAGAT
1 TTTTTATTAAAATTTTTTGAT
8698026 TTTT
1 TTTT
8698030 AAAAAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
21 19 0.50
22 5 0.13
23 2 0.05
24 12 0.32
ACGTcount: A:0.26, C:0.01, G:0.06, T:0.67
Consensus pattern (21 bp):
TTTTTATTAAAATTTTTTGAT
Found at i:8698945 original size:234 final size:231
Alignment explanation
Indices: 8698659--8699421 Score: 695
Period size: 235 Copynumber: 3.2 Consensus size: 231
8698649 TGTTTTTTTT
* * * * *
8698659 TATATTTACAA-TAACAATAATTAATTAAAATTTTACATTATCAATTTAATTATTTAGGTTACAA
1 TATATTTACAAGAAACAATAATTAATTAAAATTTTA-ATTGT-TACTTAATTATTTAGGTTATAA
* * * *
8698723 TAATATTTTTTATGGTTGTTCTTATCTTCAATTATATTTAGAATTGTCATAACTCTTTTCTAATA
64 TAATATTTTTTATGATTGTTCTTATCTTCAATTACATTTAGAATTGTAATAACTC-TTTCTAGTA
* * * * *
8698788 TGTTATGACACTTCTTACATACTTTATGCTAAATAATACGAATATTATATTTCCTCTCATTTGTT
128 TATTATGACACTTCTTACTTATTTTATGATAAATGATACGAAT-TTATATTTCCTCTCATTTGTT
* *
8698853 TATGTTATTAATTTTTTTATTATTTATGATCTATTTTCTTA
192 TATGTTACTAA-TTTTTTATTATTTATTATCTATTTTCTTA
* *
8698894 TATATTTACAA-AGA-AATAATTAATTAAAATTTTAAGTTGCTTACTTAATTATTTATGTTATAA
1 TATATTTACAAGAAACAATAATTAATTAAAATTTTAA-TTG-TTACTTAATTATTTAGGTTATAA
** * * * * *
8698957 TAATATTTTCTTATGATTGTTAATAT-TATCCATTACATTTAAAATTATTAA-AGCTCATTCTCA
64 TAATATTTT-TTATGATTGTTCTTATCT-TCAATTACATTTAGAATT-GTAATAACTCTTTCT-A
* * * * * *
8699020 GTGTATTATGACATTTTTTACTTATTTTAT-ATAAAATGATACGAGTTTTTAGTTTCTTCTCATT
125 GTATATTATGACACTTCTTACTTATTTTATGAT-AAATGATACGAATTTATA-TTTCCTCTCATT
* *
8699084 TATTTATGTTACTAATTATTTATTATTTATTATCTATTTTTCTTA
188 TGTTTATGTTACTAATTTTTTATTATTTATTATCTA-TTTTCTTA
* * * *
8699129 TATTTTTACAA-AAATAATAATTAATTAAAATTTTGTATTGTTAACTTAATTATTTATGTTATAA
1 TATATTTACAAGAAACAATAATTAATTAAAATTTT-AATTGTT-ACTTAATTATTTA-GGT-T-A
* * * * **
8699193 TAATATATATTTTTTACGTTTGTTCTTACCTT-ACGTTACATTTAGAATTGTAATTGCTCTTT-T
61 TAATA-ATATTTTTTATGATTGTTCTTATCTTCA-ATTACATTTAGAATTGTAATAACTCTTTCT
* * * * * **
8699256 AGTATATTATGACACTTCTTACTTATTTTACGTTAAATGATACGAATTTTATGTTTTCTGTCACC
124 AGTATATTATGACACTTCTTACTTATTTTATGATAAATGATACGAA-TTTATATTTCCTCTCATT
* **
8699321 CGTTTACT-TTACCT-ATTTTTTATTATTTATTAAATATTTTCCTTA
188 TGTTTA-TGTTA-CTAATTTTTTATTATTTATTATCTATTTT-CTTA
* * *
8699366 TATATTTA-AAGAAACAATAATTAATTAAAAGTTTATATTGTCAAATTAATTATTTA
1 TATATTTACAAGAAACAATAATTAATTAAAATTTTA-ATTGT-TACTTAATTATTTA
8699422 CATTAGCCTT
Statistics
Matches: 428, Mismatches: 73, Indels: 52
0.77 0.13 0.09
Matches are distributed among these distances:
233 1 0.00
234 78 0.18
235 126 0.29
236 43 0.10
237 122 0.29
238 13 0.03
239 37 0.09
240 8 0.02
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (231 bp):
TATATTTACAAGAAACAATAATTAATTAAAATTTTAATTGTTACTTAATTATTTAGGTTATAATA
ATATTTTTTATGATTGTTCTTATCTTCAATTACATTTAGAATTGTAATAACTCTTTCTAGTATAT
TATGACACTTCTTACTTATTTTATGATAAATGATACGAATTTATATTTCCTCTCATTTGTTTATG
TTACTAATTTTTTATTATTTATTATCTATTTTCTTA
Found at i:8699351 original size:237 final size:237
Alignment explanation
Indices: 8698577--8699421 Score: 727
Period size: 237 Copynumber: 3.6 Consensus size: 237
8698567 ATTTTATGCC
* * * ** *
8698577 TATTTTACGCCAAATTATATGAATTTTATATTTTCTCTCACCTGTTTACATTGCCT-ATATTTTT
1 TATTTTACGCTAAATGATACGAATTTTATATTTTCTCTCACCTGTTTATGTT-ACTAAT-TTTTT
** * * * *
8698641 -TTA--TAAAATGT-TTTTT-TT-TATATTTACAATAACAATAATTAATTAAAATTTTACATTAT
64 ATTATTTATTATCTATTTTTCTTATATATTTACAAAAACAATAATTAATTAAAATTTTATATTGT
* * * * *
8698700 CAATTTAATTATTTA-GGT-T-ACAATA-ATATTTTTTATGGTTGTTCTTATCTT-CAATTATAT
129 CAACTTAATTATTTATGTTATAATAATATATATTTTTTATGATTGTTCTTA-CTTAC-ATTACAT
* * * * * *
8698760 TTAGAATTGTCATAACTCTTTTCTAATATGTTATGACACTTCTTACA
192 TTAGAATTGTAATAGCTCATTT-TAGTATATTATGACACTTCTTACT
* * * * * ** *
8698807 TACTTTATGCTAAATAATACGAATATTATATTTCCTCTCATTTGTTTATGTTATTAATTTTTTTA
1 TATTTTACGCTAAATGATACGAATTTTATATTTTCTCTCACCTGTTTATGTTACTAA-TTTTTTA
* *
8698872 TTATTTATGATCTA-TTTTCTTATATATTTACAAAGA-AATAATTAATTAAAATTTTA-AGTTG-
65 TTATTTATTATCTATTTTTCTTATATATTTACAAAAACAATAATTAATTAAAATTTTATA-TTGT
* * **
8698933 CTTACTTAATTATTTATGTTATAAT-A-ATAT-TTTCTTATGATTGTTAATA-TTATCCATTACA
129 C-AACTTAATTATTTATGTTATAATAATATATATTTTTTATGATTGTTCTTACTTA--CATTACA
* * * * * *
8698994 TTTAAAATTATTAA-AGCTCATTCTCAGTGTATTATGACATTTTTTACT
191 TTTAGAATT-GTAATAGCTCATT-TTAGTATATTATGACACTTCTTACT
** * * ** * *
8699042 TATTTTA-TATAAAATGATACGAGTTTT-TAGTTTCTTCTCATTTATTTATGTTACTAATTATTT
1 TATTTTACGCT-AAATGATACGAATTTTATATTTTC-TCTCACCTGTTTATGTTACTAATTTTTT
* * *
8699105 ATTATTTATTATCTATTTTTCTTATATTTTTACAAAAATAATAATTAATTAAAATTTTGTATTGT
64 ATTATTTATTATCTATTTTTCTTATATATTTACAAAAACAATAATTAATTAAAATTTTATATTGT
* * * *
8699170 TAACTTAATTATTTATGTTATAATAATATATATTTTTTACGTTTGTTCTTACCTTACGTTACATT
129 CAACTTAATTATTTATGTTATAATAATATATATTTTTTATGATTGTTCTTA-CTTACATTACATT
*
8699235 TAGAATTGTAATTGCTC-TTTTAGTATATTATGACACTTCTTACT
193 TAGAATTGTAATAGCTCATTTTAGTATATTATGACACTTCTTACT
* * * *
8699279 TATTTTACGTTAAATGATACGAATTTTATGTTTTCTGTCACCCGTTTACT-TTACCT-ATTTTTT
1 TATTTTACGCTAAATGATACGAATTTTATATTTTCTCTCACCTGTTTA-TGTTA-CTAATTTTTT
** * *
8699342 ATTATTTATTAAATATTTTCCTTATATATTTA-AAGAAACAATAATTAATTAAAAGTTTATATTG
64 ATTATTTATTATCTATTTTTCTTATATATTTACAA-AAACAATAATTAATTAAAATTTTATATTG
*
8699406 TCAAATTAATTATTTA
128 TCAACTTAATTATTTA
8699422 CATTAGCCTT
Statistics
Matches: 489, Mismatches: 90, Indels: 65
0.76 0.14 0.10
Matches are distributed among these distances:
229 1 0.00
230 47 0.10
231 4 0.01
233 13 0.03
234 61 0.12
235 125 0.26
236 54 0.11
237 131 0.27
238 18 0.04
239 32 0.07
241 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.51
Consensus pattern (237 bp):
TATTTTACGCTAAATGATACGAATTTTATATTTTCTCTCACCTGTTTATGTTACTAATTTTTTAT
TATTTATTATCTATTTTTCTTATATATTTACAAAAACAATAATTAATTAAAATTTTATATTGTCA
ACTTAATTATTTATGTTATAATAATATATATTTTTTATGATTGTTCTTACTTACATTACATTTAG
AATTGTAATAGCTCATTTTAGTATATTATGACACTTCTTACT
Found at i:8701556 original size:2 final size:2
Alignment explanation
Indices: 8701551--8701592 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
8701541 GGCTTATCTA
*
8701551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8701592 A
1 A
8701593 CTACAAGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8702543 original size:23 final size:23
Alignment explanation
Indices: 8702516--8702561 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8702506 ATATGCTTTT
8702516 AAGTATAATATAAAGAATAATTA
1 AAGTATAATATAAAGAATAATTA
8702539 AAGTATAATATAAAGAATAATTA
1 AAGTATAATATAAAGAATAATTA
8702562 TTTCCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (23 bp):
AAGTATAATATAAAGAATAATTA
Found at i:8702552 original size:12 final size:12
Alignment explanation
Indices: 8702520--8702559 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
8702510 GCTTTTAAGT
8702520 ATAATATAAAGA
1 ATAATATAAAGA
*
8702532 ATAAT-TAAAGT
1 ATAATATAAAGA
8702543 ATAATATAAAGA
1 ATAATATAAAGA
8702555 ATAAT
1 ATAAT
8702560 TATTTCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (12 bp):
ATAATATAAAGA
Found at i:8704451 original size:13 final size:13
Alignment explanation
Indices: 8704433--8704459 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8704423 GAGGAAAACT
8704433 GAATCTAATTACA
1 GAATCTAATTACA
8704446 GAATCTAATTACA
1 GAATCTAATTACA
8704459 G
1 G
8704460 GATCAAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (13 bp):
GAATCTAATTACA
Found at i:8724066 original size:2 final size:2
Alignment explanation
Indices: 8724059--8724093 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8724049 TTAATTTAAA
*
8724059 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8724094 ATACATTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8736726 original size:404 final size:404
Alignment explanation
Indices: 8735923--8737134 Score: 1851
Period size: 404 Copynumber: 3.0 Consensus size: 404
8735913 AAAGGCTAAT
* *
8735923 GAGGTGATAACTCTATCATTAGAAACTCAAAGCAAAATGGCAAACTGTTTAAAAGAATTTGAAGA
1 GAGGTGATAACTCTATCATTAGAAACTCAAAGCAGAATGGAAAACTGTTTAAAAGAATTTGAA-A
*
8735988 A-GAAACTTTGCTTGAAGAAATCAAATTGGGGCTTTAGCAAAATGACATCTCTGAGTTGGTCGAG
65 AGGAAACTTTGCTTGAAGAAATCAAATTGGGGCTTTAGCAAAATGACATCTTTGAGTTGGTCGAG
*
8736052 ATCTGGCATTGTGTAACAACCTCTAGGAAGATGGCTTTCGAGAAAAAATATGGTCATATTGCTTC
130 ATCTGGCATTGTGTAACAACCTCTAGGAAGATGGCTTTTGAGAAAAAATATGGTCATATTGCTTC
* *
8736117 ACTCCTTGAAGTGCCTATGAAAAACCAACTGATAAGAGTTTTAGTTCAGTTTTAAGACCCTGCTT
195 ACTCCTTGAAGTGCCTATGAAAAACTAACTGATAAGAGTTCTAGTTCAGTTTTAAGACCCTGCTT
** * * *
8736182 ATAAATGTTTCATGTTCAATGAGATAGATATGACCCTGACAATTGAATAGTATACTACATTGCTA
260 ATGGATGTTTCATGTTCAACGAGATAGATATGACCCTGATAATTGAAGAGTATACTACATTGCTA
* * * * *
8736247 TGGTTGCATCTCTCCAATCCGGATAAAATCTATTAGCAAGGTTAAAAACTTGGTTCTCAAAAAAT
325 TGGTTGCATCTCTCAAAT-CGGATAAAATCTATTGGCAAGGTCAAAAACTTGGTTCTCGAAAGAT
*
8736312 AC-TGCTTGTATGATG
389 ACTTACTTGTATGATG
* * *
8736327 GAGGTGATAACTCTATCATTAGAAACTTAAAGCAGAATGGAAAACTATCTAAAAGAATTTGAAAA
1 GAGGTGATAACTCTATCATTAGAAACTCAAAGCAGAATGGAAAACTGTTTAAAAGAATTTGAAAA
*
8736392 GGAAACTTTGCTTGAAAAAATCAAATTGGGGCTTTAGCAAAATGACATCTTTGAGTTGGTCGAGA
66 GGAAACTTTGCTTGAAGAAATCAAATTGGGGCTTTAGCAAAATGACATCTTTGAGTTGGTCGAGA
** * * *
8736457 TCTGGTGTTGTGTAACAACGTCTAGAAAGATGGCTTTTGAG-AAAAATATAGTCATATTGCTTCA
131 TCTGGCATTGTGTAACAACCTCTAGGAAGATGGCTTTTGAGAAAAAATATGGTCATATTGCTTCA
* *
8736521 CTCCTTGAAGTGCCTATGAAAAACTAGCTGATAAGAGTTCTAGTTCAGCTTTAAGACCCTGCTTA
196 CTCCTTGAAGTGCCTATGAAAAACTAACTGATAAGAGTTCTAGTTCAGTTTTAAGACCCTGCTTA
*
8736586 TGGATGTTTCATGTTTAACGAGATAGATATGA-CCTCGATAATTGAAGAGTATACTACATTGCTA
261 TGGATGTTTCATGTTCAACGAGATAGATATGACCCT-GATAATTGAAGAGTATACTACATTGCTA
*
8736650 TGGTTGCATCTCTCAAATCTGGATAAAATCTATTGGCAAGGTCAAAAACATGGTTCTCGAAAGAT
325 TGGTTGCATCTCTCAAATC-GGATAAAATCTATTGGCAAGGTCAAAAACTTGGTTCTCGAAAGAT
*
8736715 ACTTACTTGTATGATT
389 ACTTACTTGTATGATG
* *
8736731 GAAGTGATAACTTTATCATTAGAAACTCAAAGCAGAATGGAAAACTGTTTAAAAGAATTT-AAAG
1 GAGGTGATAACTCTATCATTAGAAACTCAAAGCAGAATGGAAAACTGTTTAAAAGAATTTGAAA-
* * * *
8736795 AGGAAACTTTGCTGGAAGAAATCAAATTGGGCCTTTAACAAAATGACATCTTTGAGTTAGTCGAG
65 AGGAAACTTTGCTTGAAGAAATCAAATTGGGGCTTTAGCAAAATGACATCTTTGAGTTGGTCGAG
* *
8736860 ATCTGGCACTGTGTAACAACCTTTAGGAAGATGGCTTTTGAGAAAAAATATGGTCATATTGCTTC
130 ATCTGGCATTGTGTAACAACCTCTAGGAAGATGGCTTTTGAGAAAAAATATGGTCATATTGCTTC
* * * * *
8736925 ACTCCATGAAGTGCCTATGAAAAATTAATTGATAAGAGTTCTAGTTCAGTTTTAGGACCTTGCTT
195 ACTCCTTGAAGTGCCTATGAAAAACTAACTGATAAGAGTTCTAGTTCAGTTTTAAGACCCTGCTT
* * * *
8736990 ATGGATGTTTCATATTCAGCGAGATAGATATGACCCTGATAATTGAAGAGGATACTATATTGCTA
260 ATGGATGTTTCATGTTCAACGAGATAGATATGACCCTGATAATTGAAGAGTATACTACATTGCTA
* * * *
8737055 TGGTTGCATCTTCCCAATTCGGATAAAATCTATTGGAAAGGCCAAAAACTTGGTTCTCGAAAGAT
325 TGGTTGCATC-TCTCAAATCGGATAAAATCTATTGGCAAGGTCAAAAACTTGGTTCTCGAAAGAT
8737120 ACTTGA-TTGTATGAT
389 ACTT-ACTTGTATGAT
8737135 AAAGGTCCCT
Statistics
Matches: 734, Mismatches: 65, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
402 4 0.01
403 201 0.27
404 318 0.43
405 200 0.27
406 11 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (404 bp):
GAGGTGATAACTCTATCATTAGAAACTCAAAGCAGAATGGAAAACTGTTTAAAAGAATTTGAAAA
GGAAACTTTGCTTGAAGAAATCAAATTGGGGCTTTAGCAAAATGACATCTTTGAGTTGGTCGAGA
TCTGGCATTGTGTAACAACCTCTAGGAAGATGGCTTTTGAGAAAAAATATGGTCATATTGCTTCA
CTCCTTGAAGTGCCTATGAAAAACTAACTGATAAGAGTTCTAGTTCAGTTTTAAGACCCTGCTTA
TGGATGTTTCATGTTCAACGAGATAGATATGACCCTGATAATTGAAGAGTATACTACATTGCTAT
GGTTGCATCTCTCAAATCGGATAAAATCTATTGGCAAGGTCAAAAACTTGGTTCTCGAAAGATAC
TTACTTGTATGATG
Found at i:8747398 original size:36 final size:35
Alignment explanation
Indices: 8747309--8747438 Score: 113
Period size: 36 Copynumber: 3.7 Consensus size: 35
8747299 TTAGATTTAG
* * * *
8747309 TTTAAAGTTTCATTA-CCTCTAGTTAGAGGAG-TTA
1 TTTAAAGTTTCA-TAGCCTTTGGTTAGAGAAGCTTT
8747343 TTTAAAGTTTCATTA-CCTTTGGTTAGAGAAGCTTT
1 TTTAAAGTTTCA-TAGCCTTTGGTTAGAGAAGCTTT
* * * *
8747378 CTTTAAAGTGTCATAGCCTTTAGTTAGGGGAGCTTT
1 -TTTAAAGTTTCATAGCCTTTGGTTAGAGAAGCTTT
* *
8747414 TTTCAAAATTTTATAGCCTTTGGTT
1 TTT-AAAGTTTCATAGCCTTTGGTT
8747439 GGAAGAGCTT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
34 28 0.35
35 7 0.09
36 45 0.56
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.44
Consensus pattern (35 bp):
TTTAAAGTTTCATAGCCTTTGGTTAGAGAAGCTTT
Found at i:8747623 original size:36 final size:36
Alignment explanation
Indices: 8747583--8747666 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
8747573 AGCTCTTTTA
* *
8747583 AAAGTTTCATTGTCTCTAGTCAAAAGAGCTTTCTTT
1 AAAGTTTCATTATCTCTAGTCAAAAGAACTTTCTTT
* * * * * * *
8747619 AAAGTATCATCATCTCTGGTTAGAGGAATTTTCTTT
1 AAAGTTTCATTATCTCTAGTCAAAAGAACTTTCTTT
8747655 AAAGTTTCATTA
1 AAAGTTTCATTA
8747667 CCTTTGGTTA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (36 bp):
AAAGTTTCATTATCTCTAGTCAAAAGAACTTTCTTT
Found at i:8747918 original size:9 final size:9
Alignment explanation
Indices: 8747904--8747945 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
8747894 CTTTAAAAAC
8747904 AAAAACAAA
1 AAAAACAAA
8747913 AAAAACAAA
1 AAAAACAAA
8747922 AAAAACCAAA
1 AAAAA-CAAA
8747932 AAAAA-AGAA
1 AAAAACA-AA
8747941 AAAAA
1 AAAAA
8747946 TAGTGTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 1 0.03
9 21 0.68
10 9 0.29
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:8747923 original size:10 final size:10
Alignment explanation
Indices: 8747899--8747945 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
8747889 TCTTTCTTTA
8747899 AAAACAAAAAC
1 AAAA-AAAAAC
8747910 -AAAAAAAAC
1 AAAAAAAAAC
*
8747919 AAAAAAAACC
1 AAAAAAAAAC
*
8747929 AAAAAAAAAG
1 AAAAAAAAAC
8747939 AAAAAAA
1 AAAAAAA
8747946 TAGTGTTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 6 0.19
10 26 0.81
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:8747931 original size:19 final size:18
Alignment explanation
Indices: 8747904--8747945 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
8747894 CTTTAAAAAC
8747904 AAAAACAAAAAAAACA-AA
1 AAAAACAAAAAAAA-AGAA
8747922 AAAAACCAAAAAAAAAGAA
1 AAAAA-CAAAAAAAAAGAA
8747941 AAAAA
1 AAAAA
8747946 TAGTGTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAAAGAA
Found at i:8748235 original size:23 final size:25
Alignment explanation
Indices: 8748200--8748256 Score: 84
Period size: 23 Copynumber: 2.4 Consensus size: 25
8748190 TTATTATTAT
*
8748200 TTCTTT-TTTCTAACATCTTTTTT-
1 TTCTTTCTTTCTAACATATTTTTTC
8748223 TT-TTTCTTTCTAACATATTTTTTC
1 TTCTTTCTTTCTAACATATTTTTTC
8748247 TTCTTTCTTT
1 TTCTTTCTTT
8748257 TCTTTATCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 3 0.10
23 18 0.60
24 2 0.07
25 7 0.23
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (25 bp):
TTCTTTCTTTCTAACATATTTTTTC
Found at i:8749542 original size:3 final size:3
Alignment explanation
Indices: 8749534--8749584 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
8749524 TTTTTAATGA
8749534 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8749582 TAT
1 TAT
8749585 ATTGTTATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8749592 original size:8 final size:8
Alignment explanation
Indices: 8749534--8749592 Score: 64
Period size: 9 Copynumber: 6.8 Consensus size: 8
8749524 TTTTTAATGA
8749534 TATTATTAT
1 TATTA-TAT
8749543 TATTATTAT
1 TATTA-TAT
8749552 TATTATTAT
1 TATTA-TAT
8749561 TATTATTAT
1 TATTA-TAT
8749570 TATTATTAT
1 TATTA-TAT
8749579 TATTATAT
1 TATTATAT
*
8749587 TGTTAT
1 TATTAT
8749593 CATTCTTTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
8 8 0.16
9 41 0.84
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (8 bp):
TATTATAT
Found at i:8750493 original size:3 final size:3
Alignment explanation
Indices: 8750487--8750538 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8750477 ACAACAACAG
8750487 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8750535 TAA T
1 TAA T
8750539 TTCACAATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8759395 original size:19 final size:19
Alignment explanation
Indices: 8759371--8759410 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8759361 ATAATGTATT
8759371 AAAAAACTAAAAATAAATA
1 AAAAAACTAAAAATAAATA
* *
8759390 AAAAAACTAATAATAGATA
1 AAAAAACTAAAAATAAATA
8759409 AA
1 AA
8759411 TTAATGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAAACTAAAAATAAATA
Found at i:8762561 original size:25 final size:26
Alignment explanation
Indices: 8762517--8762588 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
8762507 CAAACAATAC
* *
8762517 ATAAATAAATAGATAAATAAAGAGTAAA
1 ATAAA-AAATAAATATATAAAGAG-AAA
*
8762545 AT-TAAAATAAA-ATATAAAGAGAAA
1 ATAAAAAATAAATATATAAAGAGAAA
*
8762569 GTAAAAAATAAATATATAAA
1 ATAAAAAATAAATATATAAA
8762589 CATATAACGG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
24 4 0.11
25 17 0.46
26 13 0.35
27 1 0.03
28 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (26 bp):
ATAAAAAATAAATATATAAAGAGAAA
Found at i:8762865 original size:19 final size:19
Alignment explanation
Indices: 8762842--8762885 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8762832 TTTGTTTTGA
8762842 ATTTTTT-CTTGCTTTTTTT
1 ATTTTTTGCTTG-TTTTTTT
* *
8762861 GTTTTTTGTTTGTTTTTTT
1 ATTTTTTGCTTGTTTTTTT
8762880 ATTTTT
1 ATTTTT
8762886 ATGACAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.05, C:0.05, G:0.09, T:0.82
Consensus pattern (19 bp):
ATTTTTTGCTTGTTTTTTT
Found at i:8763041 original size:39 final size:38
Alignment explanation
Indices: 8762914--8763049 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
8762904 ATAGAGACAT
* * *
8762914 ATAACTTTAAAAGTAAAAGCTCCTCCAAAATTGAGGCAC
1 ATAACTTTAAAAATAAGA-CTCCTCTAAAATTGAGGCAC
* * * * * ** *
8762953 AAAACTTTAAAAAATAGGGGCTTCTCTATAATAAAGGCAT
1 ATAACTTT-AAAAATA-AGACTCCTCTAAAATTGAGGCAC
* * *
8762993 ACAATTTTAAAACTTAAGACTCCTCTAAAATTGAGGCAC
1 ATAACTTTAAAA-ATAAGACTCCTCTAAAATTGAGGCAC
8763032 ATAACTTTAAAAAATAAG
1 ATAACTTT-AAAAATAAG
8763050 GACAATGCCC
Statistics
Matches: 69, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
39 37 0.54
40 32 0.46
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (38 bp):
ATAACTTTAAAAATAAGACTCCTCTAAAATTGAGGCAC
Found at i:8763406 original size:115 final size:112
Alignment explanation
Indices: 8763226--8763572 Score: 312
Period size: 103 Copynumber: 3.1 Consensus size: 112
8763216 ATGATTGATT
* * * *
8763226 TTCTTGAAATAT--TTTTTTTAAATAATTAGAATCTTATCTT-AGAAG-TTTCTTCTCAAACAAG
1 TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATCTTACCTTGA-AAGTTTTATTCTCAAACAAG
*
8763287 AATTTGAAGTTTCTTCACTGAAGAATCTTCATACTTACCTTCTCCACGCTG
65 AATTTGAAGTTTCTTCACTGAAGAGTCTT-ATACTTACCTT-T-CACGCTG
* * *
8763338 TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATTTTACCTTGAAAGTTTTTTTCTCAAACAAAA
1 TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATCTTACCTTGAAAGTTTTATTCTCAAACAAGA
* *
8763403 ATTTGAA-ATTCTTTCACTGAAGAGTCTT-TA--TA-C-TT-AC-AT-
66 ATTTGAAGTTTC-TTCACTGAAGAGTCTTATACTTACCTTTCACGCTG
* * * * * **
8763442 TTCTTGAAAT-TTCTTTTTGTCAAGGATTAGAATGTTACCTTGGAAGTTTTATTCTCAAATGAGA
1 TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATCTTACCTTGAAAGTTTTATTCTCAAACAAGA
* *
8763506 ATTTGAAGTTAT-TTCACTGGAGAGTTTTTATACTTACCTTTTTCACGCTGG
66 ATTTGAAGTT-TCTTCACTGAAGAG-TCTTATACTTACC--TTTCACGCT-G
8763557 TTCTT-ACAATATCCTT
1 TTCTTGA-AATATCCTT
8763573 GTTTCTTAGA
Statistics
Matches: 191, Mismatches: 23, Indels: 38
0.76 0.09 0.15
Matches are distributed among these distances:
103 63 0.33
104 14 0.07
105 4 0.02
106 2 0.01
107 2 0.01
108 2 0.01
109 1 0.01
110 1 0.01
111 4 0.02
112 14 0.07
113 3 0.02
114 31 0.16
115 46 0.24
116 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (112 bp):
TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATCTTACCTTGAAAGTTTTATTCTCAAACAAGA
ATTTGAAGTTTCTTCACTGAAGAGTCTTATACTTACCTTTCACGCTG
Found at i:8763415 original size:114 final size:113
Alignment explanation
Indices: 8763226--8763439 Score: 290
Period size: 115 Copynumber: 1.9 Consensus size: 113
8763216 ATGATTGATT
* * *
8763226 TTCTTGAAATATTTTTTTTAAATAATTAGAATCTTATCTTAGAAGTTTCTTCTCAAACAAGAATT
1 TTCTTGAAATATTTTTTTTAAAGAATTAGAATCTTACCTTAGAAGTTTCTTCTCAAACAAAAATT
*
8763291 TGAAGTTTC-TTCACTGAAGAATCTTCATACTTACCTTCTCCACGCTG
66 TGAAGATTCTTTCACTGAAGAATCTTCATACTTACCTTCTCCACGCTG
* * *
8763338 TTCTTGAAATATCCTTTTTTTCAAGAATTAGAATTTTACCTT-GAAAGTTTTTTTCTCAAACAAA
1 TTCTTGAAATAT--TTTTTTTAAAGAATTAGAATCTTACCTTAG-AAG-TTTCTTCTCAAACAAA
* *
8763402 AATTTGAA-ATTCTTTCACTGAAGAGTCTTTATACTTAC
62 AATTTGAAGATTCTTTCACTGAAGAATCTTCATACTTAC
8763440 ATTTCTTGAA
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
112 12 0.14
113 1 0.01
114 30 0.34
115 45 0.51
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.43
Consensus pattern (113 bp):
TTCTTGAAATATTTTTTTTAAAGAATTAGAATCTTACCTTAGAAGTTTCTTCTCAAACAAAAATT
TGAAGATTCTTTCACTGAAGAATCTTCATACTTACCTTCTCCACGCTG
Found at i:8765031 original size:79 final size:78
Alignment explanation
Indices: 8764894--8765168 Score: 361
Period size: 79 Copynumber: 3.5 Consensus size: 78
8764884 ACTTGCTTTC
** * * *
8764894 AACATAAGATCAAATGCCCTTGGTGATATCCCTTTTTTGAACTTGCCCATTAACATAAGACATTA
1 AACATAAGATCAAATGCCCTTAATGAGATCCC-TTTTTGAACTTGCCCCTTAACATAAGGCATTA
*
8764959 TTTCTTGGATCCTT
65 TTTCTTAGATCCTT
** * *
8764973 AACATAAGATCAAATGCTTTTAATGAAATCCCTTTTTGAACTTGTCCCCTTAAGATAAGGCATTA
1 AACATAAGATCAAATGCCCTTAATGAGATCCCTTTTTGAACTTG-CCCCTTAACATAAGGCATTA
8765038 TTTCTTAGATCCTT
65 TTTCTTAGATCCTT
* * *
8765052 AACATGAGATCAAATGCCCTTAATGAGATCCTATTTTTGAACTTGCTCCCTTGACATAAGGCATT
1 AACATAAGATCAAATGCCCTTAATGAGATCC-CTTTTTGAACTTGC-CCCTTAACATAAGGCATT
* *
8765117 ATTTCCTAAATCCTT
64 ATTTCTTAGATCCTT
* *
8765132 AACATAAGATCAAATGTCCTTAATGAGATCTCTTTTT
1 AACATAAGATCAAATGCCCTTAATGAGATCCCTTTTT
8765169 TAAACTTGTC
Statistics
Matches: 171, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
78 12 0.07
79 90 0.53
80 69 0.40
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (78 bp):
AACATAAGATCAAATGCCCTTAATGAGATCCCTTTTTGAACTTGCCCCTTAACATAAGGCATTAT
TTCTTAGATCCTT
Found at i:8765130 original size:80 final size:78
Alignment explanation
Indices: 8764894--8765180 Score: 369
Period size: 80 Copynumber: 3.6 Consensus size: 78
8764884 ACTTGCTTTC
** * *
8764894 AACATAAGATCAAATGCCCTTGGTGATATCCCTTTTTTGAACTTG-CCCATTAACATAAGACATT
1 AACATAAGATCAAATGCCCTTAATGAGAT-CCTTTTTTGAACTTGTCCC-TTAACATAAGGCATT
*
8764958 ATTTCTTGGATCCTT
64 ATTTCTTAGATCCTT
** * * *
8764973 AACATAAGATCAAATGCTTTTAATGAAATCCCTTTTTGAACTTGTCCCCTTAAGATAAGGCATTA
1 AACATAAGATCAAATGCCCTTAATGAGATCCTTTTTTGAACTTGT-CCCTTAACATAAGGCATTA
8765038 TTTCTTAGATCCTT
65 TTTCTTAGATCCTT
* *
8765052 AACATGAGATCAAATGCCCTTAATGAGATCCTATTTTTGAACTTGCTCCCTTGACATAAGGCATT
1 AACATAAGATCAAATGCCCTTAATGAGATCCT-TTTTTGAACTTG-TCCCTTAACATAAGGCATT
* *
8765117 ATTTCCTAAATCCTT
64 ATTTCTTAGATCCTT
* *
8765132 AACATAAGATCAAATGTCCTTAATGAGATCTCTTTTTTAAACTTGTCCC
1 AACATAAGATCAAATGCCCTTAATGAGATC-CTTTTTTGAACTTGTCCC
8765181 CAAATTTGGA
Statistics
Matches: 182, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
78 14 0.08
79 82 0.45
80 83 0.46
81 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (78 bp):
AACATAAGATCAAATGCCCTTAATGAGATCCTTTTTTGAACTTGTCCCTTAACATAAGGCATTAT
TTCTTAGATCCTT
Found at i:8766924 original size:15 final size:16
Alignment explanation
Indices: 8766887--8766924 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8766877 GCAAACAAAG
*
8766887 CTTTCCACTAATCTTT
1 CTTTTCACTAATCTTT
*
8766903 GTTTTCACTAATC-TT
1 CTTTTCACTAATCTTT
8766918 CTTTTCA
1 CTTTTCA
8766925 ACCTTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.18, C:0.26, G:0.03, T:0.53
Consensus pattern (16 bp):
CTTTTCACTAATCTTT
Found at i:8768472 original size:44 final size:44
Alignment explanation
Indices: 8768358--8768605 Score: 289
Period size: 44 Copynumber: 5.8 Consensus size: 44
8768348 TGTTTCCTAA
* *
8768358 ATGACAATTGAAATGATGCAAATACGCAAAGTTAAATAAACAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
* * * *
8768402 A--A-TA-GGAAATGATGCAAATGCGCAAAGTTAAACAAACAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
*
8768442 ATGACAATTGAAATGATGCAAATACACAAAGTTAAATAAACAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
* * * *
8768486 AAGACAATTGAAATGATGCAAACGTACAAA-TTAAATAAATAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
* *
8768529 A--A-TA-TGAAATGATGCAAATGCATAAAGTTAAATAAACAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
* * *
8768569 ATGACAATTGAAATTATGCAAATGCATAAAGTCAAAT
1 ATGACAATTGAAATGATGCAAATGCACAAAGTTAAAT
8768606 GATTAACTAA
Statistics
Matches: 173, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
39 19 0.11
40 48 0.28
41 2 0.01
42 3 0.02
43 15 0.09
44 86 0.50
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.23
Consensus pattern (44 bp):
ATGACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACAAT
Found at i:8768588 original size:127 final size:127
Alignment explanation
Indices: 8768360--8768605 Score: 370
Period size: 127 Copynumber: 1.9 Consensus size: 127
8768350 TTTCCTAAAT
*
8768360 GACAATTGAAATGATGCAAATACGCAAAGTTAAATAAACAATAATAGGAAATGATGCAAATGCGC
1 GACAATTGAAATGATGCAAATAC-CAAAGTTAAATAAACAATAATAGGAAATGATGCAAATGCAC
*
8768425 AAAGTTAAACAAACAATATGACAATTGAAATGATGCAAATACACAAAGTTAAATAAACAATAA
65 AAAGTTAAACAAACAATATGACAATTGAAATGATGCAAATACACAAAGTCAAATAAACAATAA
* *
8768488 GACAATTGAAATGATGCAAACGTA-CAAA-TTAAATAAATAATAATATGAAATGATGCAAATGCA
1 GACAATTGAAATGATGCAAA--TACCAAAGTTAAATAAACAATAATAGGAAATGATGCAAATGCA
* * * * *
8768551 TAAAGTTAAATAAACAATATGACAATTGAAATTATGCAAATGCATAAAGTCAAAT
64 CAAAGTTAAACAAACAATATGACAATTGAAATGATGCAAATACACAAAGTCAAAT
8768606 GATTAACTAA
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
127 81 0.76
128 24 0.22
130 2 0.02
ACGTcount: A:0.53, C:0.11, G:0.13, T:0.23
Consensus pattern (127 bp):
GACAATTGAAATGATGCAAATACCAAAGTTAAATAAACAATAATAGGAAATGATGCAAATGCACA
AAGTTAAACAAACAATATGACAATTGAAATGATGCAAATACACAAAGTCAAATAAACAATAA
Found at i:8772264 original size:2 final size:2
Alignment explanation
Indices: 8772257--8772293 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8772247 TTAAATTTAG
8772257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8772294 CACACACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8772410 original size:20 final size:19
Alignment explanation
Indices: 8772370--8772410 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
8772360 TCAAATCAAG
8772370 TTATATATTTTTATTAATTT
1 TTATATATTTTTA-TAATTT
8772390 TTATATATATTTTA-AATTT
1 TTATATAT-TTTTATAATTT
8772409 TT
1 TT
8772411 CTAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATATATTTTTATAATTT
Found at i:8773876 original size:20 final size:20
Alignment explanation
Indices: 8773851--8773908 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
8773841 CATGTGATTG
*
8773851 TAATCTTTACATATATTTTA
1 TAATCTTTAGATATATTTTA
*
8773871 TAATCTTTAGGT-TATTTTA
1 TAATCTTTAGATATATTTTA
8773890 T-AT-TTTAGATAGTATTTTA
1 TAATCTTTAGATA-TATTTTA
8773909 CTTTTTTTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 6 0.18
18 2 0.06
19 15 0.45
20 10 0.30
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (20 bp):
TAATCTTTAGATATATTTTA
Found at i:8778337 original size:11 final size:11
Alignment explanation
Indices: 8778323--8778354 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
8778313 TTTTATATTA
8778323 ATAATATAAAT
1 ATAATATAAAT
8778334 ATAATATAAAT
1 ATAATATAAAT
8778345 ATTAATATAA
1 A-TAATATAA
8778355 GTCATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:8778530 original size:33 final size:35
Alignment explanation
Indices: 8778484--8778552 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
8778474 TTAATAAGTA
* *
8778484 AGTAATTTTTT-TATTATTAATATACTAAGTTTAT
1 AGTATTTTTTTATATTATTAATATACCAAGTTTAT
*
8778518 AGTATTTTTTTATATTATTAATATGCCAAGTTTAT
1 AGTATTTTTTTATATTATTAATATACCAAGTTTAT
8778553 TAAGTTGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
34 10 0.32
35 21 0.68
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.55
Consensus pattern (35 bp):
AGTATTTTTTTATATTATTAATATACCAAGTTTAT
Found at i:8781492 original size:26 final size:25
Alignment explanation
Indices: 8781442--8781509 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
8781432 TTCTTTTTCT
8781442 ATTTGTAA-TTTTTAAATAATATTTA
1 ATTT-TAATTTTTTAAATAATATTTA
*
8781467 GATTTTAATTTTTCTAAAT-ATTTTTA
1 -ATTTTAATTTTT-TAAATAATATTTA
8781493 ATTTTTAATATTTTTAA
1 A-TTTTAAT-TTTTTAA
8781510 TTTTTCAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
25 4 0.11
26 24 0.65
27 9 0.24
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (25 bp):
ATTTTAATTTTTTAAATAATATTTA
Found at i:8781521 original size:16 final size:17
Alignment explanation
Indices: 8781469--8781522 Score: 76
Period size: 16 Copynumber: 3.2 Consensus size: 17
8781459 AATATTTAGA
8781469 TTTTAATTTTTCTAAATAT
1 TTTTAATTTTTC--AATAT
8781488 TTTTAATTTTT-AATAT
1 TTTTAATTTTTCAATAT
8781504 TTTTAATTTTTCAA-AT
1 TTTTAATTTTTCAATAT
8781520 TTT
1 TTT
8781523 AAAAAGTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
16 21 0.62
17 2 0.06
19 11 0.32
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTAATTTTTCAATAT
Found at i:8783157 original size:31 final size:31
Alignment explanation
Indices: 8783122--8783247 Score: 109
Period size: 31 Copynumber: 4.1 Consensus size: 31
8783112 TAGGGTCTCA
8783122 TTTTA-GGTTTCAAGGTTTTAAAGTTTTGAAG
1 TTTTAGGGTTTCAAGGTTTT-AAGTTTTGAAG
*
8783153 TTTTAGGGTTT-AAGGTTTTAGGCTTTTG-AG
1 TTTTAGGGTTTCAAGGTTTTAAG-TTTTGAAG
* * *
8783183 TTTTAGGATTTCGAA-GTTTCAAGGTTT-AACG
1 TTTTAGGGTTTC-AAGGTTTTAAGTTTTGAA-G
* ** *
8783214 TTTTATGGTTTCAAGGTTTTGGGTTTTGAGG
1 TTTTAGGGTTTCAAGGTTTTAAGTTTTGAAG
8783245 TTT
1 TTT
8783248 CAAGGTTTAG
Statistics
Matches: 75, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
30 20 0.27
31 47 0.63
32 8 0.11
ACGTcount: A:0.20, C:0.05, G:0.26, T:0.49
Consensus pattern (31 bp):
TTTTAGGGTTTCAAGGTTTTAAGTTTTGAAG
Found at i:8783172 original size:15 final size:16
Alignment explanation
Indices: 8783122--8783239 Score: 70
Period size: 15 Copynumber: 7.7 Consensus size: 16
8783112 TAGGGTCTCA
8783122 TTTTA-GGTTTCAAGG
1 TTTTAGGGTTTCAAGG
* * *
8783137 TTTTAAAGTTTTGAA-G
1 TTTT-AGGGTTTCAAGG
8783153 TTTTAGGGTTT-AAGG
1 TTTTAGGGTTTCAAGG
* **
8783168 TTTTAGGCTTTTGA-G
1 TTTTAGGGTTTCAAGG
*
8783183 TTTTAGGATTTCGAA-G
1 TTTTAGGGTTTC-AAGG
* * *
8783199 TTTCAAGGTTT-AACG
1 TTTTAGGGTTTCAAGG
*
8783214 TTTTATGGTTTCAAGG
1 TTTTAGGGTTTCAAGG
8783230 TTTT-GGGTTT
1 TTTTAGGGTTT
8783240 TGAGGTTTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 14
0.73 0.15 0.13
Matches are distributed among these distances:
14 4 0.05
15 46 0.57
16 24 0.30
17 6 0.08
ACGTcount: A:0.20, C:0.05, G:0.25, T:0.49
Consensus pattern (16 bp):
TTTTAGGGTTTCAAGG
Found at i:8783224 original size:23 final size:23
Alignment explanation
Indices: 8783122--8783256 Score: 80
Period size: 23 Copynumber: 5.9 Consensus size: 23
8783112 TAGGGTCTCA
*
8783122 TTTT-AGGTTTCAAGGTTTTAAAG
1 TTTTGAGGTTTCAAGG-TTTAACG
* * * *
8783145 TTTTGAAGTTTTAGGGTTTAAGG
1 TTTTGAGGTTTCAAGGTTTAACG
** * *
8783168 TTTT-AGGCTTTTGA-GTTTTAGG
1 TTTTGAGG-TTTCAAGGTTTAACG
* *
8783190 ATTTCGAAGTTTCAAGGTTTAACG
1 -TTTTGAGGTTTCAAGGTTTAACG
***
8783214 TTTT-ATGGTTTCAAGGTTTTGGG
1 TTTTGA-GGTTTCAAGGTTTAACG
8783237 TTTTGAGGTTTCAAGGTTTA
1 TTTTGAGGTTTCAAGGTTTA
8783257 GGTATTTTTT
Statistics
Matches: 85, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
22 10 0.12
23 58 0.68
24 17 0.20
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.48
Consensus pattern (23 bp):
TTTTGAGGTTTCAAGGTTTAACG
Found at i:8783248 original size:46 final size:46
Alignment explanation
Indices: 8783122--8783256 Score: 148
Period size: 46 Copynumber: 2.9 Consensus size: 46
8783112 TAGGGTCTCA
** * * *
8783122 TTTTAGGTTTCAAGGTTTTAAAGTTTTGAAGTTTTAGGGTTTAAGG
1 TTTTAGGTTTCAAGGTTTTAGGGTTTTGAAGTTTCAAGGTTTAACG
** * *
8783168 TTTTAGGCTTTTGA-GTTTTAGGATTTCGAAGTTTCAAGGTTTAACG
1 TTTTAGG-TTTCAAGGTTTTAGGGTTTTGAAGTTTCAAGGTTTAACG
*
8783214 TTTTATGGTTTCAAGGTTTT-GGGTTTTGAGGTTTCAAGGTTTA
1 TTTTA-GGTTTCAAGGTTTTAGGGTTTTGAAGTTTCAAGGTTTA
8783257 GGTATTTTTT
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
46 61 0.85
47 11 0.15
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.48
Consensus pattern (46 bp):
TTTTAGGTTTCAAGGTTTTAGGGTTTTGAAGTTTCAAGGTTTAACG
Found at i:8783857 original size:3 final size:3
Alignment explanation
Indices: 8783851--8783914 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
8783841 TACTACAATC
8783851 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8783899 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
8783915 CAAGTGCTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8785907 original size:5 final size:5
Alignment explanation
Indices: 8785894--8785948 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
8785884 CTTTAAAAGT
*
8785894 TTTTT TTTTG TTTTTG TTTTG TTTTG TTTTG TTTTG TATTT- TTTT- TTTTG
1 TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG TTTTG T-TTTG TTTTG TTTTG
8785944 ATTTT
1 -TTTT
8785949 TTGTGTTAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
4 7 0.16
5 26 0.58
6 12 0.27
ACGTcount: A:0.04, C:0.00, G:0.13, T:0.84
Consensus pattern (5 bp):
TTTTG
Found at i:8785950 original size:15 final size:15
Alignment explanation
Indices: 8785894--8785955 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
8785884 CTTTAAAAGT
*
8785894 TTTTTTTTTGTTTTTG
1 TTTTGTTTT-TTTTTG
*
8785910 TTTTGTTTTGTTTTG
1 TTTTGTTTTTTTTTG
*
8785925 TTTTGTATTTTTTT-
1 TTTTGTTTTTTTTTG
* *
8785939 TTTTGATTTTTTGTG
1 TTTTGTTTTTTTTTG
8785954 TT
1 TT
8785956 AATTTTAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 11 0.29
15 19 0.50
16 8 0.21
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (15 bp):
TTTTGTTTTTTTTTG
Found at i:8786606 original size:22 final size:22
Alignment explanation
Indices: 8786580--8786643 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
8786570 TAAAATTTGG
* *
8786580 GTGCCAACTAATATAGGCTTGC
1 GTGCCAGCTAATATAGGCTTGA
* * *
8786602 GTGCCAGCTAGTCTAGACTTGA
1 GTGCCAGCTAATATAGGCTTGA
* *
8786624 GTGCCAGCCAATTTAGGCTT
1 GTGCCAGCTAATATAGGCTT
8786644 AAAATGCCAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (22 bp):
GTGCCAGCTAATATAGGCTTGA
Found at i:8786737 original size:29 final size:29
Alignment explanation
Indices: 8786680--8786765 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 29
8786670 TACCAGTTAG
* *
8786680 TCTAGACTTAAGGTTTGGGTGCTATCTAT
1 TCTAGACTTAAGATTTGGGTGCTAGCTAT
* *
8786709 TCTAGACTTAATATTTGGGTGCTGGCTAT
1 TCTAGACTTAAGATTTGGGTGCTAGCTAT
* * * * *
8786738 TTTGGGCCTAAGATTTAGGTGCTAGCTA
1 TCTAGACTTAAGATTTGGGTGCTAGCTA
8786766 ATTTGAGCTT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.40
Consensus pattern (29 bp):
TCTAGACTTAAGATTTGGGTGCTAGCTAT
Found at i:8786780 original size:22 final size:23
Alignment explanation
Indices: 8786754--8786815 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
8786744 CCTAAGATTT
8786754 AGGTGCTAGCTAATTTGAGCTT-
1 AGGTGCTAGCTAATTTGAGCTTA
* * *
8786776 GGGTGCTAGCTAGTTTAAGCTTA
1 AGGTGCTAGCTAATTTGAGCTTA
* *
8786799 AGGTACCAGCTAATTTG
1 AGGTGCTAGCTAATTTG
8786816 GGATTAAATT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (23 bp):
AGGTGCTAGCTAATTTGAGCTTA
Found at i:8786852 original size:22 final size:22
Alignment explanation
Indices: 8786825--8786867 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8786815 GGGATTAAAT
8786825 TTTGGGTGCCAACTAATTTAGA
1 TTTGGGTGCCAACTAATTTAGA
* *
8786847 TTTGGGTGCCAATTAGTTTAG
1 TTTGGGTGCCAACTAATTTAG
8786868 GCTTAAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.40
Consensus pattern (22 bp):
TTTGGGTGCCAACTAATTTAGA
Found at i:8789197 original size:20 final size:19
Alignment explanation
Indices: 8789170--8789230 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
8789160 TTCTTTTTAG
8789170 TTTT-TTTTTGCTTTG-TTT
1 TTTTCTTTTTG-TTTGCTTT
*
8789188 TTTTCCTTTTGTTTGCCTTT
1 TTTTCTTTTTGTTTG-CTTT
*
8789208 TTTTCTTTTT-TTTACTATT
1 TTTTCTTTTTGTTTGCT-TT
8789227 TTTT
1 TTTT
8789231 GCACACATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 10 0.28
19 14 0.39
20 12 0.33
ACGTcount: A:0.03, C:0.11, G:0.07, T:0.79
Consensus pattern (19 bp):
TTTTCTTTTTGTTTGCTTT
Found at i:8789220 original size:23 final size:21
Alignment explanation
Indices: 8789170--8789220 Score: 50
Period size: 23 Copynumber: 2.4 Consensus size: 21
8789160 TTCTTTTTAG
8789170 TTTTTTTTTGCTTTGTTTTTT
1 TTTTTTTTTGCTTTGTTTTTT
* * *
8789191 TCCTTTTGTTTGCCTT-TTTTTC
1 T--TTTTTTTTGCTTTGTTTTTT
8789213 TTTTTTTT
1 TTTTTTTT
8789221 ACTATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 6 0.25
21 1 0.04
22 6 0.25
23 11 0.46
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (21 bp):
TTTTTTTTTGCTTTGTTTTTT
Found at i:8792261 original size:20 final size:20
Alignment explanation
Indices: 8792225--8792262 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8792215 GCGAATGTAT
**
8792225 GAATAAATAAATGAATGATC
1 GAATAAATAAACAAATGATC
8792245 GAATAAATAAACAAATGA
1 GAATAAATAAACAAATGA
8792263 ATAAATGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.05, G:0.13, T:0.21
Consensus pattern (20 bp):
GAATAAATAAACAAATGATC
Found at i:8795497 original size:24 final size:24
Alignment explanation
Indices: 8795466--8795511 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8795456 CCAAAAATTA
*
8795466 TTTTTTTCGAAATGC-TATTTTAG
1 TTTTTTTCAAAATGCATATTTTAG
*
8795489 TTTTATTTCAAAATTCATATTTT
1 TTTT-TTTCAAAATGCATATTTT
8795512 TGAGTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.59
Consensus pattern (24 bp):
TTTTTTTCAAAATGCATATTTTAG
Found at i:8796782 original size:3 final size:3
Alignment explanation
Indices: 8796776--8796819 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8796766 TATCACCATC
8796776 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8796820 CACAAGTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8799775 original size:20 final size:20
Alignment explanation
Indices: 8799750--8799790 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8799740 CATATGAAAA
8799750 ATTATTTCTT-TAATTTTATT
1 ATTATTT-TTATAATTTTATT
*
8799770 ATTATTTTTATATTTTTATT
1 ATTATTTTTATAATTTTATT
8799790 A
1 A
8799791 CGTATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTATTTTTATAATTTTATT
Found at i:8800111 original size:13 final size:13
Alignment explanation
Indices: 8800093--8800117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8800083 ATATTTTTAA
8800093 TTAATTAATTTTC
1 TTAATTAATTTTC
8800106 TTAATTAATTTT
1 TTAATTAATTTT
8800118 TTTTAAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TTAATTAATTTTC
Found at i:8800590 original size:245 final size:245
Alignment explanation
Indices: 8800160--8800645 Score: 909
Period size: 245 Copynumber: 2.0 Consensus size: 245
8800150 TCATATATCA
*
8800160 TTATATTAATTTTATTATTATGAAGAGTGATTTTACCTTTTCATTATTTCCTCCTTTTTTATTTT
1 TTATATTAATTTTATTATTAGGAAGAGTGATTTTACCTTTTCATTATTTCCTCCTTTTTTATTTT
* *
8800225 TATAAAATCATTTAACTAAAATATGTTTTTAAGAAGATAAATGAATGAAAATTTTGTATATTGAA
66 TATAAAATCATTTAACTAAAATATGTTCTTAAGAAGATAAATGAAAGAAAATTTTGTATATTGAA
* *
8800290 TATTTTTCTCAATACTGCATTAGTTTGGTAGTATTTTCTTTTGAAAAATACCTTCACTTAAATAT
131 TATTTTCCTCAATACTGCATTAGTTTGGTAGTATTTTCTTTTGAAAAATACCTTCACTTAAAGAT
* *
8800355 TTTAGAGAATCATTTAGAGATTTTAGAGAATCATTATTGGGTCTTCATCT
196 TTTAGAGAATCACTTAGAGATTTTAGAGAATCATTACTGGGTCTTCATCT
8800405 TTATATTAATTTTATTATTAGGAAGAGTGATTTTACCTTTTCATTATTTCCTCCTTTTTTATTTT
1 TTATATTAATTTTATTATTAGGAAGAGTGATTTTACCTTTTCATTATTTCCTCCTTTTTTATTTT
8800470 TATAAAATCATTTAACTAAAATATGTTCTTAAGAAGATAAATGAAAGAAAATTTTGTATATTGAA
66 TATAAAATCATTTAACTAAAATATGTTCTTAAGAAGATAAATGAAAGAAAATTTTGTATATTGAA
8800535 TATTTTCCTCAATACTGCATTAGTTTGGTAGTATTTTCTTTTGAAAAATACCTTCACTTAAAGAT
131 TATTTTCCTCAATACTGCATTAGTTTGGTAGTATTTTCTTTTGAAAAATACCTTCACTTAAAGAT
8800600 TTTAGAGAATCACTTAGAGATTTTAGAGAATCATTACTGGGTCTTC
196 TTTAGAGAATCACTTAGAGATTTTAGAGAATCATTACTGGGTCTTC
8800646 TTTAAAATCT
Statistics
Matches: 234, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
245 234 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (245 bp):
TTATATTAATTTTATTATTAGGAAGAGTGATTTTACCTTTTCATTATTTCCTCCTTTTTTATTTT
TATAAAATCATTTAACTAAAATATGTTCTTAAGAAGATAAATGAAAGAAAATTTTGTATATTGAA
TATTTTCCTCAATACTGCATTAGTTTGGTAGTATTTTCTTTTGAAAAATACCTTCACTTAAAGAT
TTTAGAGAATCACTTAGAGATTTTAGAGAATCATTACTGGGTCTTCATCT
Found at i:8800614 original size:21 final size:21
Alignment explanation
Indices: 8800588--8800632 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
8800578 AAAAATACCT
8800588 TCACTTAAAGATTTTAGAGAA
1 TCACTTAAAGATTTTAGAGAA
*
8800609 TCACTTAGAGATTTTAGAGAA
1 TCACTTAAAGATTTTAGAGAA
8800630 TCA
1 TCA
8800633 TTACTGGGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (21 bp):
TCACTTAAAGATTTTAGAGAA
Found at i:8804907 original size:19 final size:19
Alignment explanation
Indices: 8804875--8804929 Score: 62
Period size: 17 Copynumber: 3.0 Consensus size: 19
8804865 TTTCTTTTTT
*
8804875 TTTTTTTTTGTGTTGTTTGG
1 TTTTTATTT-TGTTGTTTGG
*
8804895 TTTTTATTTTGTT-TTT-A
1 TTTTTATTTTGTTGTTTGG
8804912 TTTTTATTTT-TTGTTTGG
1 TTTTTATTTTGTTGTTTGG
8804930 AAAGTTTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 2 0.07
17 13 0.43
18 3 0.10
19 4 0.13
20 8 0.27
ACGTcount: A:0.05, C:0.00, G:0.16, T:0.78
Consensus pattern (19 bp):
TTTTTATTTTGTTGTTTGG
Found at i:8805201 original size:49 final size:49
Alignment explanation
Indices: 8805134--8805230 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
8805124 TGAGAGGAAT
* * * *
8805134 CTTGTTTGAAAATGGCTCC-CCTCAAATAGAGGTTTTGAAACTTTAAAAC
1 CTTGTATGAAAATAGCTCCTCC-AAAATAGAGGCTTTGAAACTTTAAAAC
8805183 CTTGTATGAAAATAGCTCCTCCAAAATAGAGGCTTTGAAACTTTAAAA
1 CTTGTATGAAAATAGCTCCTCCAAAATAGAGGCTTTGAAACTTTAAAA
8805231 TTTTATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 41 0.95
50 2 0.05
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (49 bp):
CTTGTATGAAAATAGCTCCTCCAAAATAGAGGCTTTGAAACTTTAAAAC
Found at i:8814081 original size:12 final size:12
Alignment explanation
Indices: 8814050--8814081 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8814040 AAACATGCAC
*
8814050 AATGTATGCATG
1 AATGTATTCATG
8814062 AATGTATTCATG
1 AATGTATTCATG
8814074 AATGTATT
1 AATGTATT
8814082 GAAAGGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (12 bp):
AATGTATTCATG
Found at i:8815336 original size:23 final size:23
Alignment explanation
Indices: 8815310--8815355 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8815300 TCCCAAAAGT
*
8815310 AGTATCCATAGATCTTCTCCACC
1 AGTATCCATAGATCATCTCCACC
*
8815333 AGTATCCATGGATCATCTCCACC
1 AGTATCCATAGATCATCTCCACC
8815356 TTGATATAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.35, G:0.11, T:0.28
Consensus pattern (23 bp):
AGTATCCATAGATCATCTCCACC
Found at i:8818411 original size:20 final size:21
Alignment explanation
Indices: 8818387--8818441 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 21
8818377 AAATATTAAC
*
8818387 TAAAAATT-ACTAATAA-AAA
1 TAAAAATTAACTAAAAATAAA
8818406 TAAAAATTAACTAAAAATAAA
1 TAAAAATTAACTAAAAATAAA
8818427 TAAAAA-TAA-TAAAAA
1 TAAAAATTAACTAAAAA
8818442 ATGATGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 14 0.42
20 10 0.30
21 9 0.27
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAAAATTAACTAAAAATAAA
Found at i:8818422 original size:17 final size:17
Alignment explanation
Indices: 8818372--8818428 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
8818362 TCTATAAAAT
8818372 AAAATAAATATTAACTA
1 AAAATAAATATTAACTA
*
8818389 AAAAT---TACTAA-TA
1 AAAATAAATATTAACTA
*
8818402 AAAATAAAAATTAACTA
1 AAAATAAATATTAACTA
8818419 AAAATAAATA
1 AAAATAAATA
8818429 AAAATAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 7 0.22
14 5 0.16
16 4 0.12
17 16 0.50
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAAATATTAACTA
Found at i:8818434 original size:10 final size:10
Alignment explanation
Indices: 8818367--8818441 Score: 55
Period size: 10 Copynumber: 7.4 Consensus size: 10
8818357 TTTTTTCTAT
8818367 AAAATAAAATA
1 AAAAT-AAATA
* *
8818378 AATATTAACTA
1 AA-AATAAATA
* *
8818389 AAAATTACTA
1 AAAATAAATA
*
8818399 ATAA-AAATA
1 AAAATAAATA
*
8818408 AAAATTAACTA
1 AAAA-TAAATA
8818419 AAAATAAATA
1 AAAATAAATA
8818429 AAAAT-AATA
1 AAAATAAATA
8818438 AAAA
1 AAAA
8818442 ATGATGGAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
9 14 0.27
10 19 0.37
11 16 0.31
12 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (10 bp):
AAAATAAATA
Found at i:8818438 original size:30 final size:29
Alignment explanation
Indices: 8818372--8818441 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 29
8818362 TCTATAAAAT
* * *
8818372 AAAATAAATATTAACTAAAAATTACTAATA
1 AAAATAAAAATTAACTAAAAATAAATAA-A
8818402 AAAATAAAAATTAACTAAAAATAAATAAA
1 AAAATAAAAATTAACTAAAAATAAATAAA
8818431 AATAATAAAAA
1 AA-AATAAAAA
8818442 ATGATGGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 3 0.08
30 33 0.92
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (29 bp):
AAAATAAAAATTAACTAAAAATAAATAAA
Found at i:8825755 original size:88 final size:86
Alignment explanation
Indices: 8825629--8825810 Score: 197
Period size: 88 Copynumber: 2.1 Consensus size: 86
8825619 ATCAAAAAAG
* * * * * * *
8825629 AAAAAAAAAGAGCAAAAAAAGAAAGTCATGTACTTCGAAGATGAGGAGCT-GGGGCAAAAAGTGA
1 AAAAAAAAAGAGCAAAAAAAGAAAGTCATATACCTCGAAAAAGA-GAACTCGAGGCAAAAAGTAA
*
8825693 ATGAAGCTTCAATTAGAATCCT
65 ATAAAGCTTCAATTAGAATCCT
* *
8825715 AAAAAAAATGGAGCAAAGAAAAGAAA-TACATATACCTCGAAAAAGAGAATTCGAGGCAAAAAGT
1 AAAAAAAA-AGAGCAAA-AAAAGAAAGT-CATATACCTCGAAAAAGAGAACTCGAGGCAAAAAGT
* *
8825779 AAATAAAGTTTCAGTTAGAATCCT
63 AAATAAAGCTTCAATTAGAATCCT
*
8825803 AAATAAAA
1 AAAAAAAA
8825811 CTTCCAAATT
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
86 8 0.10
87 11 0.14
88 60 0.76
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.18
Consensus pattern (86 bp):
AAAAAAAAAGAGCAAAAAAAGAAAGTCATATACCTCGAAAAAGAGAACTCGAGGCAAAAAGTAAA
TAAAGCTTCAATTAGAATCCT
Found at i:8827049 original size:29 final size:31
Alignment explanation
Indices: 8827007--8827071 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
8826997 ATTATTATTT
*
8827007 AAAATTAATCATTAA-TAAA-AAATTACAAA
1 AAAATTAATAATTAATTAAATAAATTACAAA
*
8827036 AAAATTATTAATTAATTTAAATTAAATTACAAA
1 AAAATTAATAATTAA-TTAAA-TAAATTACAAA
8827069 AAA
1 AAA
8827072 GAAATAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 13 0.43
31 4 0.13
33 13 0.43
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (31 bp):
AAAATTAATAATTAATTAAATAAATTACAAA
Found at i:8827503 original size:21 final size:23
Alignment explanation
Indices: 8827462--8827503 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
8827452 TCCCTAAATT
8827462 GCACCATACCCAACACCACACAA
1 GCACCATACCCAACACCACACAA
*
8827485 GCACC-TACCC-ACCCCACAC
1 GCACCATACCCAACACCACAC
8827504 TTTGCAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 5 0.28
23 5 0.28
ACGTcount: A:0.36, C:0.55, G:0.05, T:0.05
Consensus pattern (23 bp):
GCACCATACCCAACACCACACAA
Found at i:8828897 original size:22 final size:22
Alignment explanation
Indices: 8828853--8828897 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
8828843 TCTATAAAAC
*
8828853 ATAAGAATAAAAATTAACTGAA
1 ATAAGAATAAAAATTAACAGAA
8828875 ATAAGAATAAAAA-TAATCAGAA
1 ATAAGAATAAAAATTAA-CAGAA
8828897 A
1 A
8828898 AAAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.67, C:0.04, G:0.09, T:0.20
Consensus pattern (22 bp):
ATAAGAATAAAAATTAACAGAA
Found at i:8829073 original size:16 final size:16
Alignment explanation
Indices: 8829052--8829106 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
8829042 TACTATAAAA
*
8829052 TAAAATAAAGATTAAC
1 TAAAATAAAAATTAAC
*
8829068 TAAAAT---TATTAAC
1 TAAAATAAAAATTAAC
*
8829081 AAAAATAAAAATTAAC
1 TAAAATAAAAATTAAC
8829097 TAAAAATAAA
1 T-AAAATAAA
8829107 TAAAAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
13 11 0.35
16 12 0.39
17 8 0.26
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.25
Consensus pattern (16 bp):
TAAAATAAAAATTAAC
Found at i:8829103 original size:17 final size:16
Alignment explanation
Indices: 8829075--8829106 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8829065 AACTAAAATT
8829075 ATTAACAAAAATAAAA
1 ATTAACAAAAATAAAA
8829091 ATTAACTAAAAATAAA
1 ATTAAC-AAAAATAAA
8829107 TAAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (16 bp):
ATTAACAAAAATAAAA
Found at i:8829120 original size:29 final size:27
Alignment explanation
Indices: 8829053--8829121 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
8829043 ACTATAAAAT
* *
8829053 AAAATAAAGATTAACTAAAATTATTAACA
1 AAAATAAA-ATTAACTAAAATAAATAA-A
8829082 AAAATAAAAATTAACTAAAAATAAATAAA
1 AAAAT-AAAATTAACT-AAAATAAATAAA
8829111 AATAATAAAAT
1 AA-AATAAAAT
8829122 GATGGAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (27 bp):
AAAATAAAATTAACTAAAATAAATAAA
Found at i:8831082 original size:38 final size:36
Alignment explanation
Indices: 8831019--8831121 Score: 102
Period size: 38 Copynumber: 2.9 Consensus size: 36
8831009 TTCAGTCATT
* **
8831019 TTAATAA-ATAATACATGTACCCCATCTCATATACA
1 TTAATAAGATAATACATGCATTCCATCTCATATACA
* *
8831054 TCATAATAAGATAATACATGCATTCCATCTTATCTACA
1 T--TAATAAGATAATACATGCATTCCATCTCATATACA
** *
8831092 TTAAT-AGATAGCACATGCATTTCATCTCAT
1 TTAATAAGATAATACATGCATTCCATCTCAT
8831122 GCACTTGTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
35 22 0.39
36 4 0.07
37 6 0.11
38 24 0.43
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.34
Consensus pattern (36 bp):
TTAATAAGATAATACATGCATTCCATCTCATATACA
Found at i:8835188 original size:15 final size:15
Alignment explanation
Indices: 8835170--8835199 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8835160 TGCTTTACAA
*
8835170 AAAAAATAACAAAAT
1 AAAAAATAAAAAAAT
8835185 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
8835200 CGATTTGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:8836330 original size:21 final size:22
Alignment explanation
Indices: 8836304--8836346 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
8836294 CAAATATTTC
8836304 AAAAAAAAAGCAAA-AAAGAAA
1 AAAAAAAAAGCAAAGAAAGAAA
*
8836325 AAAAAAAGAGCAAAGAAAGAAA
1 AAAAAAAAAGCAAAGAAAGAAA
8836347 GACATGCACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAGCAAAGAAAGAAA
Found at i:8837607 original size:26 final size:26
Alignment explanation
Indices: 8837578--8837636 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
8837568 CATCATCTGT
* *
8837578 ATCATGACCAAGGCATTAGCATTTGC
1 ATCATGACAAAGACATTAGCATTTGC
* * *
8837604 ATCATAAGAAAGACATTTGCATTTGC
1 ATCATGACAAAGACATTAGCATTTGC
8837630 ATCATGA
1 ATCATGA
8837637 TATCTTCATC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (26 bp):
ATCATGACAAAGACATTAGCATTTGC
Found at i:8837985 original size:22 final size:22
Alignment explanation
Indices: 8837957--8838049 Score: 105
Period size: 22 Copynumber: 4.2 Consensus size: 22
8837947 AACTTAAACC
8837957 AAGCCCAAATTAGTTGGCACCT
1 AAGCCCAAATTAGTTGGCACCT
* * * *
8837979 AAGCCCAGATTAGCTGACACTT
1 AAGCCCAAATTAGTTGGCACCT
* * *
8838001 AAGCCCAAATCAGTCGGCACCC
1 AAGCCCAAATTAGTTGGCACCT
* *
8838023 AAGCCCAGATTAGTTTGCACCT
1 AAGCCCAAATTAGTTGGCACCT
8838045 AAGCC
1 AAGCC
8838050 TAGATCAACT
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 55 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (22 bp):
AAGCCCAAATTAGTTGGCACCT
Found at i:8838048 original size:44 final size:44
Alignment explanation
Indices: 8837957--8838049 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
8837947 AACTTAAACC
* * * *
8837957 AAGCCCAAATTAGTTGGCACCTAAGCCCAGATTAGCTGACACTT
1 AAGCCCAAATCAGTCGGCACCCAAGCCCAGATTAGCTGACACCT
*
8838001 AAGCCCAAATCAGTCGGCACCCAAGCCCAGATTAGTTTG-CACCT
1 AAGCCCAAATCAGTCGGCACCCAAGCCCAGATTAG-CTGACACCT
8838045 AAGCC
1 AAGCC
8838050 TAGATCAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 41 0.95
45 2 0.05
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (44 bp):
AAGCCCAAATCAGTCGGCACCCAAGCCCAGATTAGCTGACACCT
Found at i:8838064 original size:44 final size:43
Alignment explanation
Indices: 8837957--8838068 Score: 109
Period size: 44 Copynumber: 2.5 Consensus size: 43
8837947 AACTTAAACC
* * * *
8837957 AAGCCCAAATTAGTTGGCACCTAAGCCCAGATTAGCTGACACTT
1 AAGCCCAAATCA-CTGGCACCCAAGCCCAGATTAGCTGACACCT
* *
8838001 AAGCCCAAATCAGTCGGCACCCAAGCCCAGATTAGTTTG-CACCT
1 AAGCCCAAATCACT-GGCACCCAAGCCCAGATTAG-CTGACACCT
* *
8838045 AAGCCTAGATCAACTGGCACCCAA
1 AAGCCCAAATC-ACTGGCACCCAA
8838069 ATGATATTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
43 1 0.02
44 52 0.91
45 4 0.07
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (43 bp):
AAGCCCAAATCACTGGCACCCAAGCCCAGATTAGCTGACACCT
Found at i:8838407 original size:104 final size:103
Alignment explanation
Indices: 8838253--8838458 Score: 285
Period size: 104 Copynumber: 2.0 Consensus size: 103
8838243 ACCTCTAGGC
*
8838253 AAAACATTTTAAATTTTCAAAGTTTCAATGACTTTAATACAAGGAACATTCAAAGATGTT-AGGA
1 AAAACATTTTAAATTTTCAAAGTTTCAATGACTCTAATACAAGGAACATTCAAA-ATGTTGA-GA
* *
8838317 TTTGTAAAACCTCT-AGGCATAATCT-ATAAGACCTTCGAGT
64 ATTGTAAAACCTCTGA-GCATAATCTCA-AAAACCTTCGAGT
* * *
8838357 AAAACATTTTAAATTTTTAAAGTTTCAAT-ACCTCTAATACAATGAGCATTCAAAATGTTGAGAA
1 AAAACATTTTAAATTTTCAAAGTTTCAATGA-CTCTAATACAAGGAACATTCAAAATGTTGAGAA
8838421 TTGTAAAACCTCTGAGCATAATCTCAAAAACCTTCGAG
65 TTGTAAAACCTCTGAGCATAATCTCAAAAACCTTCGAG
8838459 CATAATCTTT
Statistics
Matches: 92, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
103 41 0.45
104 51 0.55
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (103 bp):
AAAACATTTTAAATTTTCAAAGTTTCAATGACTCTAATACAAGGAACATTCAAAATGTTGAGAAT
TGTAAAACCTCTGAGCATAATCTCAAAAACCTTCGAGT
Found at i:8838452 original size:22 final size:22
Alignment explanation
Indices: 8838425--8838466 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
8838415 TGAGAATTGT
8838425 AAAACC-TCTGAGCATAATCTCA
1 AAAACCTTC-GAGCATAATCTCA
8838447 AAAACCTTCGAGCATAATCT
1 AAAACCTTCGAGCATAATCT
8838467 TTAAGACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (22 bp):
AAAACCTTCGAGCATAATCTCA
Found at i:8838475 original size:22 final size:22
Alignment explanation
Indices: 8838434--8838499 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
8838424 TAAAACCTCT
*
8838434 GAGCATAATCTCA-AAAACCTTC
1 GAGCATAATCT-ATAAGACCTTC
*
8838456 GAGCATAATCTTTAAGACC-TC
1 GAGCATAATCTATAAGACCTTC
*
8838477 CAGACATAATCTATAAGACCTTC
1 GAG-CATAATCTATAAGACCTTC
8838500 AGGTAAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 4 0.11
22 31 0.84
23 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.26
Consensus pattern (22 bp):
GAGCATAATCTATAAGACCTTC
Found at i:8838514 original size:147 final size:148
Alignment explanation
Indices: 8838325--8838770 Score: 496
Period size: 148 Copynumber: 3.0 Consensus size: 148
8838315 GATTTGTAAA
* *
8838325 ACCTCTAGGCATAATCTATAAGACCTTC-GAGTAAAACATTTTAAATTTTTAAAGTTTCAATACC
1 ACCTCCAGACATAATCTATAAGACCTTCAG-GTAAAACATTTTAAATTTTTAAAGTTTCAATACC
* * * *
8838389 TCTAATACAATGAGCATTCAAA-ATGTTGAGAATTGTAAAACCTCTGAGCATAATCTCAAAAACC
65 TCTAATACGAGGAGCATTCAAAGATGTTGAGATTTGTAAAACCTCAGAGCATAATCTCAAAAACC
8838453 TTCGAGCATAATCTTTAAG
130 TTCGAGCATAATCTTTAAG
* *
8838472 ACCTCCAGACATAATCTATAAGACCTTCAGGTAAAATATTTTAAATTTTTAAAATTTCAA-AGCC
1 ACCTCCAGACATAATCTATAAGACCTTCAGGTAAAACATTTTAAATTTTTAAAGTTTCAATA-CC
* * * *
8838536 TCTGATACGAGGAGCATTCAAAGATGTTGAGATTTGTAAGAA-CTCCGAGCATAATCTCTAAGA-
65 TCTAATACGAGGAGCATTCAAAGATGTTGAGATTTGTAA-AACCTCAGAGCATAATCTCAAAAAC
* ** *
8838599 GTTTTAGGCATAATTTTTAAG
129 CTTCGA-GCATAATCTTTAAG
* * * * * *
8838620 ACTTCCA-AGCATAATATATAACACC-TCTAGGCAAAACATTTTAAATTTTAAAAGTTTCAATGC
1 ACCTCCAGA-CATAATCTATAAGACCTTC-AGGTAAAACATTTTAAATTTTTAAAGTTTCAATAC
* * * * * * **
8838683 CTCTAATATGAGGAGCTTTTAAAGATGTTGAGATTTGTAAGACCTCAAAGTATAATCTCCGAAAC
64 CTCTAATACGAGGAGCATTCAAAGATGTTGAGATTTGTAAAACCTCAGAGCATAATCTCAAAAAC
8838748 C-TCGAGCATAA-CTTTCAAG
129 CTTCGAGCATAATCTTT-AAG
8838767 ACCT
1 ACCT
8838771 TTAGGAAACA
Statistics
Matches: 249, Mismatches: 39, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
146 4 0.02
147 94 0.38
148 149 0.60
149 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.31
Consensus pattern (148 bp):
ACCTCCAGACATAATCTATAAGACCTTCAGGTAAAACATTTTAAATTTTTAAAGTTTCAATACCT
CTAATACGAGGAGCATTCAAAGATGTTGAGATTTGTAAAACCTCAGAGCATAATCTCAAAAACCT
TCGAGCATAATCTTTAAG
Done.