Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 37 of 117
Found at i:9203382 original size:38 final size:39
Alignment explanation
Indices: 9203340--9203500 Score: 110
Period size: 41 Copynumber: 4.3 Consensus size: 39
9203330 TTTTTTCTAT
9203340 TGTATTTTATGTAT-TTTATTATTTATTTATTATTATTA
1 TGTATTTTATGTATATTTATTATTTATTTATTATTATTA
* * *
9203378 TGTATTAATATATGTATATCT-TTATTTATTTATT-TTTTTC
1 TGTATT--T-TATGTATATTTATTATTTATTTATTATTATTA
** * *
9203418 TGT-TAATATTTATATGTA-T-TTTATTTA-TA-TAGTTA
1 TGTATTTTATGTATATTTATTATTTATTTATTATTA-TTA
* *
9203453 TATA-TTTAT-TATTATATTATAATTTATTTATTATTATTA
1 TGTATTTTATGTA-TAT-TTATTATTTATTTATTATTATTA
9203492 T-TATTTTAT
1 TGTATTTTAT
9203501 CTTGTAATAT
Statistics
Matches: 94, Mismatches: 14, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
34 4 0.04
35 18 0.19
36 12 0.13
38 16 0.17
39 12 0.13
40 10 0.11
41 20 0.21
42 2 0.02
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (39 bp):
TGTATTTTATGTATATTTATTATTTATTTATTATTATTA
Found at i:9203578 original size:3 final size:3
Alignment explanation
Indices: 9203572--9203613 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9203562 CGTTTATCTG
9203572 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9203614 TTGGGCTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:9204305 original size:12 final size:12
Alignment explanation
Indices: 9204290--9204315 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9204280 AGATCCAACC
9204290 CGACCCGAGCGT
1 CGACCCGAGCGT
9204302 CGACCCGAGCGT
1 CGACCCGAGCGT
9204314 CG
1 CG
9204316 TCCCACTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.42, G:0.35, T:0.08
Consensus pattern (12 bp):
CGACCCGAGCGT
Found at i:9204537 original size:6 final size:6
Alignment explanation
Indices: 9204516--9204595 Score: 69
Period size: 6 Copynumber: 13.7 Consensus size: 6
9204506 TTTAATATTC
* *
9204516 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTA TTTTT- GTTTTA -TTTT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* * *
9204560 GTTTTA TTTTATT TTATTTA TTTTCA TTTTTA TTTT
1 TTTTTA TTTT-TA TT-TTTA TTTTTA TTTTTA TTTT
9204596 GTTTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 16 0.27
6 36 0.60
7 6 0.10
8 2 0.03
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:9204581 original size:4 final size:5
Alignment explanation
Indices: 9204517--9204603 Score: 86
Period size: 5 Copynumber: 16.4 Consensus size: 5
9204507 TTAATATTCT
* *
9204517 TTTTA TCTTTA TTTTA TTTTTA TTTTTA TTTTTG TTTTA TTTTG TTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA
*
9204566 TTTTA TTTTA -TTTA TTTTCA TTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
9204604 ATTCAATTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
4 4 0.06
5 40 0.56
6 23 0.32
7 4 0.06
ACGTcount: A:0.15, C:0.02, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:9204709 original size:61 final size:57
Alignment explanation
Indices: 9204606--9204801 Score: 234
Period size: 61 Copynumber: 3.4 Consensus size: 57
9204596 GTTTTATTAT
* * *
9204606 TCAATTTT-CTT-TAAATAAAAATTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAAATTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTA
* *
9204661 TCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAGGTTTTTTTGAGGAAAATTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAAATTTC--AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTA
* * * * *
9204722 TTAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTTTTGAAGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAAT-AAAATTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTA
*
9204780 TCAATTTTCCTTAAAAACAAAA
1 TCAATTTTCCTTAAAAATAAAA
9204802 ATAAAAATAA
Statistics
Matches: 118, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
55 8 0.07
56 3 0.03
57 13 0.11
58 37 0.31
59 6 0.05
60 5 0.04
61 39 0.33
62 7 0.06
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (57 bp):
TCAATTTTCCTTAAAAATAAAATTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTA
Found at i:9206211 original size:20 final size:20
Alignment explanation
Indices: 9206186--9206224 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
9206176 TAATTTAATT
9206186 AAAAGATACAA-AAAAGAAAA
1 AAAAGATA-AAGAAAAGAAAA
9206206 AAAAGATAAAGAAAAGAAA
1 AAAAGATAAAGAAAAGAAA
9206225 CAAACAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (20 bp):
AAAAGATAAAGAAAAGAAAA
Found at i:9208204 original size:18 final size:18
Alignment explanation
Indices: 9208159--9208204 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
9208149 TATGGTCAAA
*
9208159 TAATTAATTA-TTTTTAT
1 TAATTTATTATTTTTTAT
9208176 TAATGTT-TTATTTTTTAT
1 TAAT-TTATTATTTTTTAT
9208194 TAATTTATTAT
1 TAATTTATTAT
9208205 ATATTGTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TAATTTATTATTTTTTAT
Found at i:9210046 original size:3 final size:3
Alignment explanation
Indices: 9210038--9210077 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9210028 GTCACAAAAT
9210038 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
9210078 TAAGCAAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:9211873 original size:190 final size:190
Alignment explanation
Indices: 9211540--9211921 Score: 611
Period size: 190 Copynumber: 2.0 Consensus size: 190
9211530 AGGTACGTGG
* * * * *
9211540 GGCCCTACCTCATGTTTTTTACCATTCAAAGGTTACGGGTTTTTTAAAATGGAACAGGAGCCTTA
1 GGCCCTACCACATGTTTTTGACCATTCAAAGGTTACGGGTCTTTTAAAATAGAACAAGAGCCTTA
*
9211605 CATATTAAAGAGGTGGGGCTATGGAGAATATGAATCACGTTTATTGTCGTTTGATAGCGTGGTGG
66 CATATTAAAGAGGTGGGGCTATGGAGAATATGAATCACGTTTATTGTCGTTTGATAGCATGGTGG
* * *
9211670 AAGGAGTAGAGTGGGTTGGTGATTCGATTATTGTCGTGGATGTATATTAAGATGATGGTT
131 AAGGAGTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATGATGGTT
* **
9211730 GGCCCTGCCACATGTTTTTGACCATTCAAAGGTTACGGGTCTTTTAACGTAGAACAAGAGCCTTA
1 GGCCCTACCACATGTTTTTGACCATTCAAAGGTTACGGGTCTTTTAAAATAGAACAAGAGCCTTA
* **
9211795 CATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATTTTTATTGTCGTTTGATAGCATGGTGG
66 CATATTAAAGAGGTGGGGCTATGGAGAATATGAATCACGTTTATTGTCGTTTGATAGCATGGTGG
* *
9211860 AAGGAGTAGAGTGGGTAGGTGATTCGACTATTATTGTTGATGTATATTAAGATGATGGTT
131 AAGGAGTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATGATGGTT
9211920 GG
1 GG
9211922 AACACAGGAA
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
190 175 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (190 bp):
GGCCCTACCACATGTTTTTGACCATTCAAAGGTTACGGGTCTTTTAAAATAGAACAAGAGCCTTA
CATATTAAAGAGGTGGGGCTATGGAGAATATGAATCACGTTTATTGTCGTTTGATAGCATGGTGG
AAGGAGTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATGATGGTT
Found at i:9212447 original size:514 final size:517
Alignment explanation
Indices: 9211394--9212765 Score: 2014
Period size: 514 Copynumber: 2.6 Consensus size: 517
9211384 AATGATCAAA
* * * *
9211394 ATGGTTGGAATGCACGAGTAAAATATGGAGATTATGAATCACGTTTATTGTCATTTGATAACGTG
1 ATGGTTGGAATACAGGAATAAAATATGGAGATTATGAATCACGTTTATTGTCATTTGATAGCGTG
* *
9211459 GTGGAAGGAGTAGAATGGGTAGGTGATTCGGCTATTGTTATGAATGTATATTAATATGATAAAAA
66 GTGGAAGGAGTAGAATGGGTAGGTGATTC-GCTATTGTTATGGATGTATATTAACATGAT-AAAA
* * *
9211524 AGTGTTAGGTACGTGGGGCCCTACCTCATGTTTTTTACCATTCAAAGGTTACGGGTTTTTTAAAA
129 AGTGTTAGGTACGTGGGGCCCTACCCCATGTTTTTTACCATTCAAAGGTTACGGGTCTTTTAAAG
* *
9211589 TGGAACAGGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGAATATGAATCACGTTTATTGTCG
194 TGGAACAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCACGTTTATTGTCG
* *
9211654 TTTGATAGCGTGGTGGAAGGAGTAGAGTGGGTTGGTGATTCGATTATTGTCGTGGATGTATATTA
259 TTTGATAGCGTGGTGGAAGGAGTAGAGTGGGTTGGTGATTCGACTATTATC-TGGATGTATATTA
* *
9211719 AGATGATGGTTGGCCCTGCCACATGTTTTTGACCATTCAAAGGTTACGGGTCTTTTAACGTAGAA
323 AGATAATGGTTGGCCCTGCCACATGTTTTTGACCATTCAAAGGTTACGGGACTTTTAACGTAGAA
*
9211784 CAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATTTTTATTGTCGTTTGA
388 CAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATGTTTATTGTCGTTTGA
* * *
9211849 TAGCATGGTGGAAGGAGTAGAGTGGGTAGGTGATTCGACTATTATTGTTGATGTATATTAAGATG
453 TAGCATGGTGGAAGGACTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATG
* * * *
9211914 ATGGTTGGAACACAGGAATAAAATATGGAGATTATGAATCATGTTTATTGACATTTGATAGTGTG
1 ATGGTTGGAATACAGGAATAAAATATGGAGATTATGAATCACGTTTATTGTCATTTGATAGCGTG
* *
9211979 GTGGAAGGAGTAGAATGGATTGGTGATTCGCTATTGTTATGGATGTATATTAACATGATGAAAAA
66 GTGGAAGGAGTAGAATGGGTAGGTGATTCGCTATTGTTATGGATGTATATTAACATGAT-AAAAA
* * * *
9212044 GTGTTAAGTACGTGGGGCCCTACCCCATGTTTTTTACCATTCAAAGTTTACAGGTCTTTTAACGT
130 GTGTTAGGTACGTGGGGCCCTACCCCATGTTTTTTACCATTCAAAGGTTACGGGTCTTTTAAAGT
* * ** *
9212109 GGAACAAGAGCTTTATATATTAAAGAGGTGGGGCTATAAAGATTATGAATCACTTTTATTGTCGT
195 GGAACAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCACGTTTATTGTCGT
* * * *
9212174 TTGATAGCATGGTGGAAGGAGTAGAATGGGTTGGTGATTCAACTATTAT-T-GTTG-ATATTAAG
260 TTGATAGCGTGGTGGAAGGAGTAGAGTGGGTTGGTGATTCGACTATTATCTGGATGTATATTAAG
** * *
9212236 ATAATGGTTGGCCCTGCCTTATGTTTTT-ACCATTGAAAGGTTACGGGACTTTTAACGTGGAACA
325 ATAATGGTTGGCCCTGCCACATGTTTTTGACCATTCAAAGGTTACGGGACTTTTAACGTAGAACA
9212300 AGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATGTTTATTGTCGTTTGATA
390 AGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATGTTTATTGTCGTTTGATA
* * * *
9212365 GCGTGGTGGAAGGACTTGAGTGGGTTGGTGATTCGACTATTGTCGTGGATGTATATTAAGATG
455 GCATGGTGGAAGGACTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATG
* * *
9212428 ATGGTTGAAATACAGGAATAAAATATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTG
1 ATGGTTGGAATACAGGAATAAAATATGGAGATTATGAATCACGTTTATTGTCATTTGATAGCGTG
* * * * * *
9212493 GTTGAAGGAGTAGAGTGGGTAAGTGATTTGGCTATTATTGTGGATGTATATTAACATGATAAATA
66 GTGGAAGGAGTAGAATGGGTAGGTGA-TTCGCTATTGTTATGGATGTATATTAACATGATAAA-A
* * * * * * *
9212558 GGTGTTAGGTACGTTGGGCCCTACCCTATGTTTTTGACCATTCAAAGGTTATGGGTCTTTCAATG
129 AGTGTTAGGTACGTGGGGCCCTACCCCATGTTTTTTACCATTCAAAGGTTACGGGTCTTTTAAAG
* * *
9212623 TGGAACAAGAGCCTTACATTTTAAAGAGGTAGGGTTATGGAGATTATGAATCACGTTTATTGTCG
194 TGGAACAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCACGTTTATTGTCG
* * * * *
9212688 TTTGATAGGGTGGTGGAAAGAGTACAGTGGGTAGGTGATTCGACTATTTTCATGGATGTATATTA
259 TTTGATAGCGTGGTGGAAGGAGTAGAGTGGGTTGGTGATTCGACTATTATC-TGGATGTATATTA
*
9212753 AGATGATGGTTGG
323 AGATAATGGTTGG
9212766 AATACAAGAA
Statistics
Matches: 756, Mismatches: 90, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
514 235 0.31
515 218 0.29
516 3 0.00
517 2 0.00
518 3 0.00
519 211 0.28
520 84 0.11
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (517 bp):
ATGGTTGGAATACAGGAATAAAATATGGAGATTATGAATCACGTTTATTGTCATTTGATAGCGTG
GTGGAAGGAGTAGAATGGGTAGGTGATTCGCTATTGTTATGGATGTATATTAACATGATAAAAAG
TGTTAGGTACGTGGGGCCCTACCCCATGTTTTTTACCATTCAAAGGTTACGGGTCTTTTAAAGTG
GAACAAGAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCACGTTTATTGTCGTT
TGATAGCGTGGTGGAAGGAGTAGAGTGGGTTGGTGATTCGACTATTATCTGGATGTATATTAAGA
TAATGGTTGGCCCTGCCACATGTTTTTGACCATTCAAAGGTTACGGGACTTTTAACGTAGAACAA
GAGCCTTACATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATGTTTATTGTCGTTTGATAG
CATGGTGGAAGGACTAGAGTGGGTAGGTGATTCGACTATTATCGTGGATGTATATTAAGATG
Found at i:9212552 original size:123 final size:123
Alignment explanation
Indices: 9212328--9212552 Score: 324
Period size: 123 Copynumber: 1.8 Consensus size: 123
9212318 GAGGTGGGGC
** * * * **
9212328 TATGGAGATTATGAATCATGTTTATTGTCGTTTGATAGCGTGGTGGAAGGACTTGAGTGGGTTGG
1 TATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTGGTGGAAGGACTAGAGTGGGTAAG
* *
9212393 TGATTCGACTATTGTCGTGGATGTATATTAAGATGATGGTTGAAATACAGGAATAAAA
66 TGATTCGACTATTATCGTGGATGTATATTAACATGATGGTTGAAATACAGGAATAAAA
* *
9212451 TATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTGGTTGAAGGAGTAGAGTGGGTAAG
1 TATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTGGTGGAAGGACTAGAGTGGGTAAG
* * *
9212516 TGATTTGGCTATTATTGTGGATGTATATTAACATGAT
66 TGATTCGACTATTATCGTGGATGTATATTAACATGAT
9212553 AAATAGGTGT
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
123 88 1.00
ACGTcount: A:0.28, C:0.07, G:0.29, T:0.36
Consensus pattern (123 bp):
TATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTGGTGGAAGGACTAGAGTGGGTAAG
TGATTCGACTATTATCGTGGATGTATATTAACATGATGGTTGAAATACAGGAATAAAA
Found at i:9212872 original size:330 final size:329
Alignment explanation
Indices: 9212245--9212885 Score: 951
Period size: 330 Copynumber: 1.9 Consensus size: 329
9212235 GATAATGGTT
* * * *
9212245 GGCCCTGCCTTATGTTTTTACCATTGAAAGGTTACGGGACTTTTAACGTGGAACAAGAGCCTTAC
1 GGCCCTACCCTATGTTTTTACCATTCAAAGGTTACGGGACTTTCAACGTGGAACAAGAGCCTTAC
* *
9212310 ATATTAAAGAGGTGGGGCTATGGAGATTATGAATCATGTTTATTGTCGTTTGATAGCGTGGTGGA
66 ATATTAAAGAGGTAGGGCTATGGAGATTATGAATCACGTTTATTGTCGTTTGATAGCGTGGTGGA
* ** * *
9212375 AGGACTTGAGTGGGTTGGTGATTCGACTATTGTCGTGGATGTATATTAAGATGATGGTTGAAATA
131 AAGACTACAGTGGGTAGGTGATTCGACTATTGTCATGGATGTATATTAAGATGATGGTTGAAATA
* * * * *
9212440 CAGGAATAAAATATGGAGATTATGAATCACATTTACTGTCATTTGATAGCGTGGTTGAAGGAGTA
196 CAAGAATAAAATATGAAGATTAGGAATCACATTTACTGTCATTTAATAGCGTGGTGGAAGGAGTA
* * *
9212505 GAGTGGGTAAGTGATTTGGCTATTATTGTGGATGTATATTAACATGATAAATAGGTGTTAGGTAC
261 GAGTGGCTAAGTGATTCGGCTATTATTATGGATGTATATTAACATGATAAATAGGTGTTAGGTAC
9212570 GTTG
326 GTTG
* * *
9212574 GGCCCTACCCTATGTTTTTGACCATTCAAAGGTTATGGGTCTTTCAATGTGGAACAAGAGCCTTA
1 GGCCCTACCCTATGTTTTT-ACCATTCAAAGGTTACGGGACTTTCAACGTGGAACAAGAGCCTTA
* * *
9212639 CATTTTAAAGAGGTAGGGTTATGGAGATTATGAATCACGTTTATTGTCGTTTGATAGGGTGGTGG
65 CATATTAAAGAGGTAGGGCTATGGAGATTATGAATCACGTTTATTGTCGTTTGATAGCGTGGTGG
* * *
9212704 AAAGAGTACAGTGGGTAGGTGATTCGACTATTTTCATGGATGTATATTAAGATGATGGTTGGAAT
130 AAAGACTACAGTGGGTAGGTGATTCGACTATTGTCATGGATGTATATTAAGATGATGGTTGAAAT
* ** *
9212769 ACAAGAATAAAATATGAAGATTAGGAATCACATTTATTGTTGTTTAATAGTGTGGTGGAAGGAGT
195 ACAAGAATAAAATATGAAGATTAGGAATCACATTTACTGTCATTTAATAGCGTGGTGGAAGGAGT
* *
9212834 AGAGTGGCT-AGTTGATTCGGCTATTGTTATGGATGTATATTAAGATGATAAA
260 AGAGTGGCTAAG-TGATTCGGCTATTATTATGGATGTATATTAACATGATAAA
9212886 AAATGTTAGG
Statistics
Matches: 276, Mismatches: 34, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
329 19 0.07
330 257 0.93
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (329 bp):
GGCCCTACCCTATGTTTTTACCATTCAAAGGTTACGGGACTTTCAACGTGGAACAAGAGCCTTAC
ATATTAAAGAGGTAGGGCTATGGAGATTATGAATCACGTTTATTGTCGTTTGATAGCGTGGTGGA
AAGACTACAGTGGGTAGGTGATTCGACTATTGTCATGGATGTATATTAAGATGATGGTTGAAATA
CAAGAATAAAATATGAAGATTAGGAATCACATTTACTGTCATTTAATAGCGTGGTGGAAGGAGTA
GAGTGGCTAAGTGATTCGGCTATTATTATGGATGTATATTAACATGATAAATAGGTGTTAGGTAC
GTTG
Found at i:9212882 original size:123 final size:123
Alignment explanation
Indices: 9212658--9212882 Score: 335
Period size: 123 Copynumber: 1.8 Consensus size: 123
9212648 GAGGTAGGGT
* * * * *
9212658 TATGGAGATTATGAATCACGTTTATTGTCGTTTGATAGGGTGGTGGAAAGAGTACAGTGGGTAGG
1 TATGAAGATTAGGAATCACATTTATTGTCGTTTAATAGGGTGGTGGAAAGAGTACAGTGGCTAGG
9212723 TGATTCGACTATTTTCATGGATGTATATTAAGATGATGGTTGGAATACAAGAATAAAA
66 TGATTCGACTATTTTCATGGATGTATATTAAGATGATGGTTGGAATACAAGAATAAAA
* * * * *
9212781 TATGAAGATTAGGAATCACATTTATTGTTGTTTAATAGTGTGGTGGAAGGAGTAGAGTGGCTAGT
1 TATGAAGATTAGGAATCACATTTATTGTCGTTTAATAGGGTGGTGGAAAGAGTACAGTGGCTAGG
*
9212846 TGATTCGGCTATTGTT-ATGGATGTATATTAAGATGAT
66 TGATTCGACTATT-TTCATGGATGTATATTAAGATGAT
9212883 AAAAAATGTT
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
123 88 0.98
124 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.36
Consensus pattern (123 bp):
TATGAAGATTAGGAATCACATTTATTGTCGTTTAATAGGGTGGTGGAAAGAGTACAGTGGCTAGG
TGATTCGACTATTTTCATGGATGTATATTAAGATGATGGTTGGAATACAAGAATAAAA
Found at i:9212949 original size:76 final size:75
Alignment explanation
Indices: 9212820--9212964 Score: 218
Period size: 76 Copynumber: 1.9 Consensus size: 75
9212810 GTTTAATAGT
* * * * *
9212820 GTGGTGGAAGGAGTAGAGTGGCTAGTTGATTCGGCTATTGTTATGGATGTATATTAAGATGATAA
1 GTGGTGGAAGGAGTAGAGTGGCTAGGTGATTCAGCTATTGTTATGCATATATATTAAAATGATAA
9212885 AAAATGTTAG
66 AAAATGTTAG
* *
9212895 GTGGTGGAAGGAGTAGAGATGGGTAGGTGATTCAGCTATTGTTGTGCATATATATTAAAATGATA
1 GTGGTGGAAGGAGTAGAG-TGGCTAGGTGATTCAGCTATTGTTATGCATATATATTAAAATGATA
9212960 AAAAA
65 AAAAA
9212965 AATTAGGTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
75 18 0.29
76 44 0.71
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.32
Consensus pattern (75 bp):
GTGGTGGAAGGAGTAGAGTGGCTAGGTGATTCAGCTATTGTTATGCATATATATTAAAATGATAA
AAAATGTTAG
Found at i:9218205 original size:16 final size:17
Alignment explanation
Indices: 9218186--9218218 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9218176 ATGGCTTCCT
9218186 TTCA-TTTCTTTCTCAA
1 TTCATTTTCTTTCTCAA
*
9218202 TTCATTTTCTTTTTCAA
1 TTCATTTTCTTTCTCAA
9218219 GAAAGCTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.61
Consensus pattern (17 bp):
TTCATTTTCTTTCTCAA
Found at i:9218962 original size:144 final size:144
Alignment explanation
Indices: 9218587--9218994 Score: 436
Period size: 144 Copynumber: 2.8 Consensus size: 144
9218577 TCATTTTTGG
* * * *
9218587 GATTTTAAA-GCACCAAAAATCATGAAATATTATAAAATTGAGATATGAAAAGTTTCATGAAAAT
1 GATTTTAAATGAACAAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAAT
* * * *
9218651 TCGAGCTTT-AAAAGGCTAAATTACAAAAATATCCTTAAATGGTATTTTGATAATTTCACACCTC
66 TTGAG-TTTGAGAAGGCCAAATTATAAAAATATCCTTAAATGGTATTTTGATAATTTCACACCTC
* *
9218715 TTAGGGTACTGCTGT
130 TTAGGGTACTACTAT
* * * * * * *
9218730 GATTTCAAAT-ACATAAAAAATTATGAAATATTATGAAGTTAAGATTTAAAAAGTTTCAAGAAAA
1 GATTTTAAATGA-ACAAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAA
* * * * *
9218794 TCTGAGCTTGAGAAAGCCAAATTATGAAAATAT-CTT-TATGGAGTATTTTGATAATTTCACACC
65 TTTGAGTTTGAGAAGGCCAAATTATAAAAATATCCTTAAAT-G-GTATTTTGATAATTTCACACC
9218857 T-TTAGGGGTACTACTAT
128 TCTTA-GGGTACTACTAT
* *
9218874 TATTTTAAATGAACAAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTT-ATTGGAAA
1 GATTTTAAATGAACAAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCA-TGAAAA
* * * * *
9218938 TTTGAGTTTGGGAAGGCCATATTATAAAAATACTCC-CAAATGGAATTTTAATAATTT
65 TTTGAGTTTGAGAAGGCCAAATTATAAAAATA-TCCTTAAATGGTATTTTGATAATTT
9218995 TGTATTTCCC
Statistics
Matches: 213, Mismatches: 41, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
142 2 0.01
143 18 0.08
144 187 0.88
145 3 0.01
146 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (144 bp):
GATTTTAAATGAACAAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAAT
TTGAGTTTGAGAAGGCCAAATTATAAAAATATCCTTAAATGGTATTTTGATAATTTCACACCTCT
TAGGGTACTACTAT
Found at i:9219177 original size:20 final size:20
Alignment explanation
Indices: 9219132--9219178 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
9219122 AGTTTTGTGT
* *
9219132 AATTTTGACTTTATTTGATT
1 AATTTTAACTTTATTTGATC
9219152 AATTTTAACTTTA-TTGATC
1 AATTTTAACTTTATTTGATC
9219171 AAGTTTTA
1 AA-TTTTA
9219179 CTGGATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55
Consensus pattern (20 bp):
AATTTTAACTTTATTTGATC
Found at i:9219502 original size:18 final size:18
Alignment explanation
Indices: 9219478--9219513 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9219468 TTATTTCATT
*
9219478 TTTTTTTTTTGTTGTTTTA
1 TTTTTTGTTT-TTGTTTTA
9219497 TTTTTTGTTTTTGTTTT
1 TTTTTTGTTTTTGTTTT
9219514 TGAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (18 bp):
TTTTTTGTTTTTGTTTTA
Found at i:9219767 original size:37 final size:36
Alignment explanation
Indices: 9219726--9219829 Score: 102
Period size: 37 Copynumber: 2.9 Consensus size: 36
9219716 ATTGCAAGTC
* *
9219726 AAAAAAATAAAAATGATTGAGACAACACCAACGATC-
1 AAAAAAATAAAAATGACTAAGACAACACCAACG-TCA
* * * * * *
9219762 GAAAAAACAAATATGACCAAGACAACCCCATACGTTA
1 AAAAAAATAAAAATGACTAAGACAACACCA-ACGTCA
*
9219799 AAAAAAATAAAGATGACTAAGACAACACCAA
1 AAAAAAATAAAAATGACTAAGACAACACCAA
9219830 TAATTGCGAA
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
36 25 0.47
37 28 0.53
ACGTcount: A:0.58, C:0.19, G:0.11, T:0.12
Consensus pattern (36 bp):
AAAAAAATAAAAATGACTAAGACAACACCAACGTCA
Found at i:9220002 original size:35 final size:36
Alignment explanation
Indices: 9219906--9220007 Score: 111
Period size: 36 Copynumber: 2.9 Consensus size: 36
9219896 AACATAGGTC
* *
9219906 AAAAAAATAAAGATAACTGAGATAACACCAACGGTT
1 AAAAAAATAAAGATGACTGAGATAACACCAACGATT
* *
9219942 AAAAAAATAAATATGAC-CAGGATAACACCAACGATCT
1 AAAAAAATAAAGATGACTGA-GATAACACCAACGAT-T
* *
9219979 -AAAAAATAAA-ATGACTGAAATAACTCCAA
1 AAAAAAATAAAGATGACTGAGATAACACCAA
9220008 TAGTTGAGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
35 15 0.27
36 40 0.71
37 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.11, T:0.17
Consensus pattern (36 bp):
AAAAAAATAAAGATGACTGAGATAACACCAACGATT
Found at i:9220103 original size:18 final size:17
Alignment explanation
Indices: 9220039--9220105 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
9220029 TTGGGACAAC
9220039 AAAATGATCAAAAAAAT
1 AAAATGATCAAAAAAAT
* * * *
9220056 AAATATGACCGAGATAAT
1 AAA-ATGATCAAAAAAAT
* *
9220074 ACTAATGGTCAAAAAAAT
1 A-AAATGATCAAAAAAAT
9220092 AAAGATGATCAAAA
1 AAA-ATGATCAAAA
9220106 CAACACTAAC
Statistics
Matches: 35, Mismatches: 12, Indels: 5
0.67 0.23 0.10
Matches are distributed among these distances:
17 4 0.11
18 30 0.86
19 1 0.03
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.19
Consensus pattern (17 bp):
AAAATGATCAAAAAAAT
Found at i:9220114 original size:36 final size:36
Alignment explanation
Indices: 9220041--9220114 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 36
9220031 GGGACAACAA
* * * * *
9220041 AATGATCAAAAAAATAAATATGACCGAGATAATACT
1 AATGATCAAAAAAATAAAGATGACCAAAACAACACT
* *
9220077 AATGGTCAAAAAAATAAAGATGATCAAAACAACACT
1 AATGATCAAAAAAATAAAGATGACCAAAACAACACT
9220113 AA
1 AA
9220115 CGGTTGTGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.58, C:0.12, G:0.11, T:0.19
Consensus pattern (36 bp):
AATGATCAAAAAAATAAAGATGACCAAAACAACACT
Found at i:9220478 original size:4 final size:4
Alignment explanation
Indices: 9220462--9220504 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
9220452 TTATTTCTAT
*
9220462 TTTA TTT- TTTA TTTA TTATA TTTA TTTA CTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTT
9220505 TATCATTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 28 0.80
5 4 0.11
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:9220483 original size:21 final size:21
Alignment explanation
Indices: 9220459--9220507 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
9220449 TTTTTATTTC
*
9220459 TATTTTATTT-TTTATTTA-T
1 TATTTTATTTACTTATTTATT
9220478 TATATTTATTTACTTATTTATT
1 TAT-TTTATTTACTTATTTATT
9220500 TATTTTAT
1 TATTTTAT
9220508 CATTTATCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 7 0.27
21 12 0.46
22 4 0.15
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
TATTTTATTTACTTATTTATT
Found at i:9226218 original size:15 final size:16
Alignment explanation
Indices: 9226198--9226227 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9226188 GAAAAAGGTC
9226198 TAAAAAA-TAAAAAAG
1 TAAAAAATTAAAAAAG
9226213 TAAAAAATTAAAAAA
1 TAAAAAATTAAAAAA
9226228 ACAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
TAAAAAATTAAAAAAG
Found at i:9226639 original size:35 final size:36
Alignment explanation
Indices: 9226601--9226694 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 36
9226591 AAAGATATCA
*
9226601 AAAATAAAAAATGAAAAAAAAAAAATAAAAAAAT-A
1 AAAATAAAAAATGAAAAAAAAAAAAGAAAAAAATGA
* * *
9226636 AAAATAAAGAAT-AAAAGGAAAAAAAGAGAAAAATGA
1 AAAATAAAAAATGAAAA-AAAAAAAAGAAAAAAATGA
9226672 AAGAATGAAAAAAAATGAAAAAA
1 AA-AAT---AAAAAATGAAAAAA
9226695 TGTAAAATGA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
34 4 0.09
35 25 0.54
36 3 0.07
37 3 0.07
40 7 0.15
41 4 0.09
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.10
Consensus pattern (36 bp):
AAAATAAAAAATGAAAAAAAAAAAAGAAAAAAATGA
Found at i:9226651 original size:26 final size:27
Alignment explanation
Indices: 9226607--9226696 Score: 76
Period size: 29 Copynumber: 3.3 Consensus size: 27
9226597 ATCAAAAATA
* * * *
9226607 AAAAATGAAAAAAAAAAAATAAAAAAAT
1 AAAAATGAAAGAATAAAAA-AAAAAGAG
9226635 AAAAAT-AAAGAATAAAAGGAAAAAAAGAG
1 AAAAATGAAAGAAT-AAA--AAAAAAAGAG
* *
9226664 AAAAATGAAAGAATGAAAAAAAATGA-
1 AAAAATGAAAGAATAAAAAAAAAAGAG
9226690 AAAAATG
1 AAAAATG
9226697 TAAAATGAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
26 7 0.13
27 13 0.25
28 9 0.17
29 14 0.27
30 9 0.17
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (27 bp):
AAAAATGAAAGAATAAAAAAAAAAGAG
Found at i:9226701 original size:9 final size:8
Alignment explanation
Indices: 9226600--9226701 Score: 75
Period size: 8 Copynumber: 12.5 Consensus size: 8
9226590 AAAAGATATC
9226600 AAAAAT-A
1 AAAAATGA
9226607 AAAAATGA
1 AAAAATGA
9226615 AAAAA--A
1 AAAAATGA
*
9226621 AAAAATAA
1 AAAAATGA
*
9226629 AAAAATAA
1 AAAAATGA
*
9226637 AAATAAAGA
1 AAA-AATGA
*
9226646 ATAAAAGGA
1 A-AAAATGA
*
9226655 AAAAAAGA
1 AAAAATGA
9226663 GAAAAATGA
1 -AAAAATGA
*
9226672 AAGAATGAAA
1 AAAAATG--A
9226682 AAAAATGA
1 AAAAATGA
*
9226690 AAAAATGT
1 AAAAATGA
9226698 AAAA
1 AAAA
9226702 TGAGAGAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
6 6 0.08
7 6 0.08
8 42 0.53
9 16 0.20
10 9 0.11
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAATGA
Found at i:9226703 original size:25 final size:26
Alignment explanation
Indices: 9226654--9226704 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
9226644 GAATAAAAGG
9226654 AAAAAAAGAGAAAAATGAAAGAATGA
1 AAAAAAAGAGAAAAATGAAAGAATGA
*
9226680 AAAAAAATGA-AAAAATGTAA-AATGA
1 AAAAAAA-GAGAAAAATGAAAGAATGA
9226705 GAGAAAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 16 0.70
27 2 0.09
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.12
Consensus pattern (26 bp):
AAAAAAAGAGAAAAATGAAAGAATGA
Found at i:9227785 original size:21 final size:21
Alignment explanation
Indices: 9227754--9227837 Score: 127
Period size: 21 Copynumber: 4.1 Consensus size: 21
9227744 TAAAATTATA
*
9227754 AGTTTCAAATGAGAATCTTTT
1 AGTTTCAAATGAGAATCTTTG
**
9227775 AGTTTTTAATGAGAATCTTTG
1 AGTTTCAAATGAGAATCTTTG
9227796 AGTTTCAAATGAGAA--TTTG
1 AGTTTCAAATGAGAATCTTTG
9227815 AGTTTCAAATGAGAATCTTTG
1 AGTTTCAAATGAGAATCTTTG
9227836 AG
1 AG
9227838 ATATGAAACC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
19 19 0.34
21 37 0.66
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (21 bp):
AGTTTCAAATGAGAATCTTTG
Found at i:9227830 original size:40 final size:41
Alignment explanation
Indices: 9227754--9227837 Score: 125
Period size: 40 Copynumber: 2.0 Consensus size: 41
9227744 TAAAATTATA
* **
9227754 AGTTTCAAATGAGAATCTTTTAGTTTTTAATGAGAATCTTTG
1 AGTTTCAAATGAGAA-CTTTGAGTTTCAAATGAGAATCTTTG
9227796 AGTTTCAAATGAGAA-TTTGAGTTTCAAATGAGAATCTTTG
1 AGTTTCAAATGAGAACTTTGAGTTTCAAATGAGAATCTTTG
9227836 AG
1 AG
9227838 ATATGAAACC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
40 24 0.62
42 15 0.38
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (41 bp):
AGTTTCAAATGAGAACTTTGAGTTTCAAATGAGAATCTTTG
Found at i:9228541 original size:18 final size:18
Alignment explanation
Indices: 9228498--9228557 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
9228488 AATTTTGGAT
*
9228498 AAATTCTTACGAAGCTAA
1 AAATTCTTACGAATCTAA
**
9228516 AAAGTTCTTGTGAATCTAA
1 AAA-TTCTTACGAATCTAA
*
9228535 AAATTCTTACAAATCTAA
1 AAATTCTTACGAATCTAA
9228553 AAATT
1 AAATT
9228558 TTTATAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 20 0.57
19 15 0.43
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (18 bp):
AAATTCTTACGAATCTAA
Found at i:9228555 original size:19 final size:19
Alignment explanation
Indices: 9228498--9228555 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
9228488 AATTTTGGAT
*
9228498 AAATTCTTACGAAGCTAAA
1 AAATTCTTACGAATCTAAA
* **
9228517 AAGTTCTTGTGAATCT-AA
1 AAATTCTTACGAATCTAAA
*
9228535 AAATTCTTACAAATCTAAA
1 AAATTCTTACGAATCTAAA
9228554 AA
1 AA
9228556 TTTTTATAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.31
Consensus pattern (19 bp):
AAATTCTTACGAATCTAAA
Found at i:9228842 original size:44 final size:44
Alignment explanation
Indices: 9228680--9228997 Score: 248
Period size: 44 Copynumber: 7.4 Consensus size: 44
9228670 TCAAAGAGAT
* * *
9228680 TTATTTATTTTTTAAAA-TCATTGAGCCTTTGATTAGAGGAGCT
1 TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
* *
9228723 TTA-TT-TTTTT--AAAGTCATTGAGGCTCTGTTTAGAGGAGCC
1 TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
** * * *
9228763 TTATTTATTTTTCCAAAAGTTGTTAAGCCTCTGATTAAAGGAACC
1 TTATTTATTTTT-CAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
* * * **
9228808 TTATTTATTTTTCAAAAGTTATTGAGCTTTTGATTAGATAAGCC
1 TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
* * ** * * *
9228852 ----TT-GTTTTCCAAAGTGGTTAAGCTTCTGATTAGAGGAGCT
1 TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
* * *
9228891 TTGTTTGTTTTTC-AAAGTCATTGAGCCTCTGATTAGAGGAGCT
1 TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
* * *
9228934 TTGTTTA-TTTTCTAAAAGTCATTAAGCCTCT-ATTTAGCGGAGCC
1 TTATTTATTTTTC-AAAAGTCATTGAGCCTCTGA-TTAGAGGAGCC
*
9228978 ATATTTATTTTTTCAAAAGT
1 TTATTTA-TTTTTCAAAAGT
9228998 TGTGAGCCTC
Statistics
Matches: 220, Mismatches: 39, Indels: 30
0.76 0.13 0.10
Matches are distributed among these distances:
39 31 0.14
40 27 0.12
41 7 0.03
42 12 0.05
43 38 0.17
44 59 0.27
45 41 0.19
46 5 0.02
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (44 bp):
TTATTTATTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGCC
Found at i:9228865 original size:128 final size:127
Alignment explanation
Indices: 9228680--9228962 Score: 286
Period size: 128 Copynumber: 2.2 Consensus size: 127
9228670 TCAAAGAGAT
* * * * **
9228680 TTATTTATTTTTTAAAA-TCATTGAGCCTTTGATTAGAGGAGCTTTATTTTTTTAAAGTCATTGA
1 TTATTTATTTTTCAAAAGTCATTGAGCCTTTGATTAGAGAAGCCTTAGTTTTCCAAAGTCATT-A
* * **
9228744 GGC-TCTGTTTAGAGGAGCCTTATTTATTTTTCCAAAAGTTGTTAAGCCTCTGATTAAAGGAACC
65 AGCTTCTGATTAGAGGAGCCTTATTTATTTTT-C-AAAGTCATTAAGCCTCTGATTAAAGGAACC
* * * **
9228808 TTATTTATTTTTCAAAAGTTATTGAGCTTTTGATTAGATAAGCCTT-GTTTTCCAAAGTGGTTAA
1 TTATTTATTTTTCAAAAGTCATTGAGCCTTTGATTAGAGAAGCCTTAGTTTTCCAAAGTCATTAA
* * * * * * *
9228872 GCTTCTGATTAGAGGAGCTTTGTTTGTTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCT
66 GCTTCTGATTAGAGGAGCCTTATTTATTTTTCAAAGTCATTAAGCCTCTGATTAAAGGAACC
* *
9228934 TTGTTTA-TTTTCTAAAAGTCATTAAGCCT
1 TTATTTATTTTTC-AAAAGTCATTGAGCCT
9228963 CTATTTAGCG
Statistics
Matches: 126, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
125 5 0.04
126 43 0.34
127 4 0.03
128 51 0.40
129 23 0.18
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.43
Consensus pattern (127 bp):
TTATTTATTTTTCAAAAGTCATTGAGCCTTTGATTAGAGAAGCCTTAGTTTTCCAAAGTCATTAA
GCTTCTGATTAGAGGAGCCTTATTTATTTTTCAAAGTCATTAAGCCTCTGATTAAAGGAACC
Found at i:9228895 original size:39 final size:39
Alignment explanation
Indices: 9228816--9228939 Score: 104
Period size: 39 Copynumber: 3.1 Consensus size: 39
9228806 CCTTATTTAT
* * * * ** *
9228816 TTTTCAAAAGTTATTGAGCTTTTGATTAGATAAGCCTTG
1 TTTTCCAAAGTCATTAAGCTTCTGATTAGAGGAGCTTTG
**
9228855 TTTTCCAAAGTGGTTAAGCTTCTGATTAGAGGAGCTTTGTTTG
1 TTTTCCAAAGTCATTAAGCTTCTGATTAGAGGAGC----TTTG
* * *
9228898 TTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTG
1 TTTTCCAAAGTCATTAAGCTTCTGATTAGAGGAGCTTTG
9228937 TTT
1 TTT
9228940 ATTTTCTAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
39 35 0.51
43 33 0.49
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.43
Consensus pattern (39 bp):
TTTTCCAAAGTCATTAAGCTTCTGATTAGAGGAGCTTTG
Found at i:9231121 original size:12 final size:13
Alignment explanation
Indices: 9231104--9231136 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
9231094 ATTTATTTTC
9231104 AATAAAAAATA-A
1 AATAAAAAATATA
*
9231116 AATAAAAAATATT
1 AATAAAAAATATA
9231129 AATAAAAA
1 AATAAAAA
9231137 TTTTAGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AATAAAAAATATA
Found at i:9244949 original size:3 final size:3
Alignment explanation
Indices: 9244943--9244991 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
9244933 TATATAGAAG
*
9244943 TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9244991 T
1 T
9244992 GCATAAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:9262761 original size:20 final size:19
Alignment explanation
Indices: 9262736--9262780 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
9262726 ATTACAAAAT
9262736 ATATTTTAAAAATTAAATAC
1 ATATTTT-AAAATTAAATAC
*
9262756 ATA-TTTAAAATTAAATAT
1 ATATTTTAAAATTAAATAC
9262774 ATATTTT
1 ATATTTT
9262781 TAAGATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 14 0.61
19 6 0.26
20 3 0.13
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATTTTAAAATTAAATAC
Found at i:9263317 original size:15 final size:15
Alignment explanation
Indices: 9263297--9263326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9263287 CTGAAATAAA
9263297 AAAAAAAAAAAAGGG
1 AAAAAAAAAAAAGGG
*
9263312 AAAAAAGAAAAAGGG
1 AAAAAAAAAAAAGGG
9263327 GGAAAGAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGGG
Found at i:9263336 original size:16 final size:16
Alignment explanation
Indices: 9263296--9263345 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
9263286 ACTGAAATAA
*
9263296 AAAAAAAAAAAAAGGG
1 AAAAAAGAAAAAAGGG
*
9263312 AAAAAAGAAAAAGGGG
1 AAAAAAGAAAAAAGGG
* *
9263328 GAAAGAGAAAGAAAGGG
1 AAAAAAGAAA-AAAGGG
9263345 A
1 A
9263346 GGTAAAGAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 22 0.81
17 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAGGG
Found at i:9264059 original size:7 final size:7
Alignment explanation
Indices: 9264047--9264071 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9264037 AAAAACAACC
9264047 AAAATAT
1 AAAATAT
9264054 AAAATAT
1 AAAATAT
9264061 AAAATAT
1 AAAATAT
9264068 AAAA
1 AAAA
9264072 AAAAGTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATAT
Found at i:9264836 original size:15 final size:15
Alignment explanation
Indices: 9264818--9264851 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
9264808 AAAAAATTAA
9264818 AAAAGAAAAAAAAAG
1 AAAAGAAAAAAAAAG
*
9264833 AAAAGAGAAAAAAAG
1 AAAAGAAAAAAAAAG
9264848 AAAA
1 AAAA
9264852 TGTAGCTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAAAAG
Found at i:9266423 original size:16 final size:17
Alignment explanation
Indices: 9266392--9266424 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9266382 AAATCAAATG
9266392 ACTTGACATGTCAAATAC
1 ACTTGACA-GTCAAATAC
9266410 ACTTGACA-TCAAATA
1 ACTTGACAGTCAAATA
9266425 GGTCTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.27
Consensus pattern (17 bp):
ACTTGACAGTCAAATAC
Found at i:9274177 original size:16 final size:13
Alignment explanation
Indices: 9274154--9274192 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
9274144 AAGGAGAAGA
9274154 AGAAAAAAAATAA-
1 AGAAAAAAAA-AAT
9274167 AGAAAACAAAAAAT
1 AGAAAA-AAAAAAT
9274181 AGAAAAAAAAAA
1 AGAAAAAAAAAA
9274193 GAGTTTAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.05
Consensus pattern (13 bp):
AGAAAAAAAAAAT
Found at i:9276842 original size:22 final size:23
Alignment explanation
Indices: 9276816--9276867 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
9276806 TTGCAACTTG
*
9276816 AATTCAAGA-GTTCACAA-TTGAA
1 AATTCAAGACATTCACAATTTG-A
9276838 AATTCAA-ACATTCACAATTTGA
1 AATTCAAGACATTCACAATTTGA
9276860 AATTCAAG
1 AATTCAAG
9276868 GATTCCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 22 0.85
23 3 0.12
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (23 bp):
AATTCAAGACATTCACAATTTGA
Found at i:9276872 original size:22 final size:20
Alignment explanation
Indices: 9276816--9276882 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 20
9276806 TTGCAACTTG
9276816 AATTCAAGAGTTCACAATTGAA
1 AATTCAAGA-TTCACAATTG-A
*
9276838 AATTCAAACATTCACAATTTGA
1 AATTC-AAGATTCACAA-TTGA
*
9276860 AATTCAAGGATTCCCAACTTGA
1 AATTCAA-GATTCACAA-TTGA
9276882 A
1 A
9276883 GTTAAATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
21 2 0.05
22 30 0.79
23 6 0.16
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (20 bp):
AATTCAAGATTCACAATTGA
Found at i:9276908 original size:27 final size:27
Alignment explanation
Indices: 9276859--9276915 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
9276849 TCACAATTTG
* *
9276859 AAATTCAAGGATTCCCAACTTGAAGTT
1 AAATTCAAAGATTACCAACTTGAAGTT
* * *
9276886 AAATTCAAAGATTATCAATTTGAATTT
1 AAATTCAAAGATTACCAACTTGAAGTT
9276913 AAA
1 AAA
9276916 GACTAGCAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (27 bp):
AAATTCAAAGATTACCAACTTGAAGTT
Found at i:9277133 original size:37 final size:36
Alignment explanation
Indices: 9277092--9277218 Score: 119
Period size: 37 Copynumber: 3.4 Consensus size: 36
9277082 TTGTAAAATT
* *
9277092 TTCAAACGTTTGCAAAAAATTTCAAGATCCATAAAGA
1 TTCAAA-GTTTGCAAAAGATTTCAAGATTCATAAAGA
* ** *** *
9277129 TTCAAAATTTATAAAAGATTTCAAAGATTTGCAATGA
1 TTCAAAGTTTGCAAAAGATTTC-AAGATTCATAAAGA
*
9277166 TTCAAAGATTGACAAAAGATTTCAAGATTCATAAAGAA
1 TTCAAAGTTTG-CAAAAGATTTCAAGATTCATAAAG-A
9277204 TTCAAAGATTTGCAA
1 TTCAAAG-TTTGCAA
9277219 TAATTCAAAT
Statistics
Matches: 68, Mismatches: 18, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
36 12 0.18
37 32 0.47
38 21 0.31
39 3 0.04
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (36 bp):
TTCAAAGTTTGCAAAAGATTTCAAGATTCATAAAGA
Found at i:9277153 original size:19 final size:19
Alignment explanation
Indices: 9277124--9277452 Score: 81
Period size: 18 Copynumber: 17.5 Consensus size: 19
9277114 CAAGATCCAT
9277124 AAAGATTCAAA-ATTTATA
1 AAAGATTCAAAGATTTATA
**
9277142 AAAGATTTCAAAGATTT-GC
1 AAAGA-TTCAAAGATTTATA
* * *
9277161 AATGATTCAAAGATTGACA
1 AAAGATTCAAAGATTTATA
*
9277180 AAAGATTTC-AAGATTCAT-
1 AAAGA-TTCAAAGATTTATA
**
9277198 AAAGAATTCAAAGATTTGCA
1 AAAG-ATTCAAAGATTTATA
* * * *
9277218 ATA-ATTCAAATATTCACA
1 AAAGATTCAAAGATTTATA
* **
9277236 AAAGATTTCGAAGATTT-GC
1 AAAGA-TTCAAAGATTTATA
* * ***
9277255 AATGATTCAAAGACTCGCA
1 AAAGATTCAAAGATTTATA
**
9277274 AAAGATTTC-AAGATTCGT-
1 AAAGA-TTCAAAGATTTATA
**
9277292 AAAGAATTCAAAGATTT-GC
1 AAAG-ATTCAAAGATTTATA
* * * *
9277311 AATGATTTAAAAATTCATA
1 AAAGATTCAAAGATTTATA
* * **
9277330 AAATATT-TAAGATTT-GC
1 AAAGATTCAAAGATTTATA
*
9277347 AATGATTCAAAGATTTATA
1 AAAGATTCAAAGATTTATA
* ** * *
9277366 AAATATTTTAAGATTCA-C
1 AAAGATTCAAAGATTTATA
* **
9277384 AATGATTCAAAGATTTGGA
1 AAAGATTCAAAGATTTATA
* *
9277403 AAAGATTTCAAAGATTCACA
1 AAAGA-TTCAAAGATTTATA
**
9277423 AAAGATTTCAATA-ATTCGTA
1 AAAGA-TTCAA-AGATTTATA
9277443 AAAGATTCAA
1 AAAGATTCAA
9277453 GAATCACAAT
Statistics
Matches: 221, Mismatches: 70, Indels: 39
0.67 0.21 0.12
Matches are distributed among these distances:
17 5 0.02
18 83 0.38
19 80 0.36
20 52 0.24
21 1 0.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.31
Consensus pattern (19 bp):
AAAGATTCAAAGATTTATA
Found at i:9277240 original size:38 final size:37
Alignment explanation
Indices: 9277198--9277288 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 37
9277188 CAAGATTCAT
* * *
9277198 AAAGAATTCAAAGATTTGCAATAATTCAAATATTCACA
1 AAAGATTTC-AAGATTTGCAATAATTCAAAGACTCACA
* *
9277236 AAAGATTTCGAAGATTTGCAATGATTCAAAGACTCGCA
1 AAAGATTTC-AAGATTTGCAATAATTCAAAGACTCACA
9277274 AAAGATTTCAAGATT
1 AAAGATTTCAAGATT
9277289 CGTAAAGAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 6 0.13
38 41 0.87
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (37 bp):
AAAGATTTCAAGATTTGCAATAATTCAAAGACTCACA
Found at i:9277241 original size:94 final size:93
Alignment explanation
Indices: 9277128--9277433 Score: 377
Period size: 94 Copynumber: 3.3 Consensus size: 93
9277118 ATCCATAAAG
* *
9277128 ATTCAAAATTTATAAAAGATTTCAAAGATTTGCAATGATTCAAAGATTGACAAAAGATTTCAAGA
1 ATTCAAAATTCACAAAAGATTTCAAAGATTTGCAATGATTCAAAGATTGACAAAAGATTTCAAGA
9277193 TTCATAAAGAATTCAAAGATTTGCAATA
66 TTCATAAAGAATTCAAAGATTTGCAATA
* *
9277221 ATTCAAATATTCACAAAAGATTTCGAAGATTTGCAATGATTCAAAGACTCG-CAAAAGATTTCAA
1 ATTCAAA-ATTCACAAAAGATTTCAAAGATTTGCAATGATTCAAAGA-TTGACAAAAGATTTCAA
*
9277285 GATTCGTAAAGAATTCAAAGATTTGCAATGA
64 GATTCATAAAGAATTCAAAGATTTGCAAT-A
* * * * * * * *
9277316 TTTAAAAATTCATAAAATATTT--AAGATTTGCAATGATTCAAAGATTTATAAAATATTTTAAGA
1 ATTCAAAATTCACAAAAGATTTCAAAGATTTGCAATGATTCAAAGATTGACAAAAGATTTCAAGA
* * * *
9277379 TTCACAATG-ATTCAAAGATTTGGAAAA
66 TTCATAAAGAATTCAAAGATTTGCAATA
9277406 GATTTCAAAGATTCACAAAAGATTTCAA
1 -A-TTCAAA-ATTCACAAAAGATTTCAA
9277434 TAATTCGTAA
Statistics
Matches: 181, Mismatches: 23, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 16 0.09
92 45 0.25
93 20 0.11
94 90 0.50
95 9 0.05
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (93 bp):
ATTCAAAATTCACAAAAGATTTCAAAGATTTGCAATGATTCAAAGATTGACAAAAGATTTCAAGA
TTCATAAAGAATTCAAAGATTTGCAATA
Found at i:9277243 original size:56 final size:57
Alignment explanation
Indices: 9277124--9277251 Score: 179
Period size: 56 Copynumber: 2.3 Consensus size: 57
9277114 CAAGATCCAT
* * * * *
9277124 AAAGA-TTCAAAATTTATAAAAGATTTCAAAGATTTGCAATGATTCAAAGATTGACA
1 AAAGATTTCAAGATTCATAAAAGAATTCAAAGATTTGCAATAATTCAAAGATTCACA
*
9277180 AAAGATTTCAAGATTCAT-AAAGAATTCAAAGATTTGCAATAATTCAAATATTCACA
1 AAAGATTTCAAGATTCATAAAAGAATTCAAAGATTTGCAATAATTCAAAGATTCACA
9277236 AAAGATTTCGAAGATT
1 AAAGATTTC-AAGATT
9277252 TGCAATGATT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
56 48 0.75
57 16 0.25
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (57 bp):
AAAGATTTCAAGATTCATAAAAGAATTCAAAGATTTGCAATAATTCAAAGATTCACA
Found at i:9277301 original size:38 final size:39
Alignment explanation
Indices: 9277198--9277305 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 39
9277188 CAAGATTCAT
* * * * * *
9277198 AAAGAATTCAAAGATTTGC-AATAATTCAAATATTCACA
1 AAAGATTTCGAAGATTCGCAAAGAATTCAAAGACTCACA
* * *
9277236 AAAGATTTCGAAGATTTGCAATG-ATTCAAAGACTCGCA
1 AAAGATTTCGAAGATTCGCAAAGAATTCAAAGACTCACA
*
9277274 AAAGATTTC-AAGATTCGTAAAGAATTCAAAGA
1 AAAGATTTCGAAGATTCGCAAAGAATTCAAAGA
9277306 TTTGCAATGA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
37 10 0.17
38 47 0.81
39 1 0.02
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.27
Consensus pattern (39 bp):
AAAGATTTCGAAGATTCGCAAAGAATTCAAAGACTCACA
Found at i:9277343 original size:36 final size:37
Alignment explanation
Indices: 9277302--9277394 Score: 134
Period size: 36 Copynumber: 2.5 Consensus size: 37
9277292 AAAGAATTCA
*
9277302 AAGATTTGCAATGATTTAAAAATTCATAAAATA-TTT
1 AAGATTTGCAATGATTCAAAAATTCATAAAATATTTT
* *
9277338 AAGATTTGCAATGATTCAAAGATTTATAAAATATTTT
1 AAGATTTGCAATGATTCAAAAATTCATAAAATATTTT
**
9277375 AAGATTCACAATGATTCAAA
1 AAGATTTGCAATGATTCAAA
9277395 GATTTGGAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 30 0.59
37 21 0.41
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.37
Consensus pattern (37 bp):
AAGATTTGCAATGATTCAAAAATTCATAAAATATTTT
Found at i:9277387 original size:37 final size:37
Alignment explanation
Indices: 9277310--9277423 Score: 131
Period size: 37 Copynumber: 3.1 Consensus size: 37
9277300 CAAAGATTTG
* * * **
9277310 CAATGATTTAAAAATTCATAAAATA-TTTAAGATTTG
1 CAATGATTCAAAGATTTATAAAATATTTTAAGATTCA
9277346 CAATGATTCAAAGATTTATAAAATATTTTAAGATTCA
1 CAATGATTCAAAGATTTATAAAATATTTTAAGATTCA
** * *
9277383 CAATGATTCAAAGATTTGGAAAAGATTTCAAAGATTCA
1 CAATGATTCAAAGATTTATAAAATATTT-TAAGATTCA
9277421 CAA
1 CAA
9277424 AAGATTTCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
36 22 0.33
37 34 0.51
38 11 0.16
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (37 bp):
CAATGATTCAAAGATTTATAAAATATTTTAAGATTCA
Found at i:9277414 original size:20 final size:20
Alignment explanation
Indices: 9277352--9277433 Score: 71
Period size: 20 Copynumber: 4.2 Consensus size: 20
9277342 TTTGCAATGA
* * *
9277352 TTCAAAGATTTATAAAATAT
1 TTCAAAGATTCACAAAAGAT
* *
9277372 TT-TAAGATTCAC-AATGA-
1 TTCAAAGATTCACAAAAGAT
***
9277389 TTCAAAGATTTGGAAAAGAT
1 TTCAAAGATTCACAAAAGAT
9277409 TTCAAAGATTCACAAAAGAT
1 TTCAAAGATTCACAAAAGAT
9277429 TTCAA
1 TTCAA
9277434 TAATTCGTAA
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
17 2 0.04
18 9 0.20
19 11 0.24
20 24 0.52
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (20 bp):
TTCAAAGATTCACAAAAGAT
Found at i:9278796 original size:3 final size:3
Alignment explanation
Indices: 9278741--9278784 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
9278731 GATATCTTCA
9278741 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9278785 ATAGAATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9278816 original size:22 final size:23
Alignment explanation
Indices: 9278768--9278830 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 23
9278758 TAATAATAAT
*
9278768 AATAAT-AAT-AATAATAAA-TAG
1 AATAATAAATGAATAA-AAATTGG
*
9278789 AATAATAAATGTA-AAAAATTGG
1 AATAATAAATGAATAAAAATTGG
*
9278811 AATAATGAATGAATAAAAAT
1 AATAATAAATGAATAAAAAT
9278831 AAGTAATGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 9 0.26
22 18 0.53
23 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (23 bp):
AATAATAAATGAATAAAAATTGG
Found at i:9279086 original size:117 final size:118
Alignment explanation
Indices: 9278865--9279131 Score: 349
Period size: 117 Copynumber: 2.3 Consensus size: 118
9278855 ATGATAAAAC
* * *
9278865 AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTCATAGAAAAAATTTTCTAAAATATTT
1 AAAAATAAAGTCACAAGTGGTGATTTTATTAAAAATATTCACAGAAAAAATTTTCTAAAATATTC
* *
9278930 TAAAAGTGTTAGAAATATTATAAAAAATTTCAAGTATAAAAAAATTATTAATA
66 TAAAAGTGTTAAAAACATTATAAAAAATTTCAAGTATAAAAAAATTATTAATA
* * ** * **
9278983 AAAAATAAAGTAACAAGTGGTGATTTTATTAAAAATATGT-ACA-CAAATTTTTTTTTTAATATT
1 AAAAATAAAGTCACAAGTGGTGATTTTATTAAAAATAT-TCACAGAAAAAATTTTCTAAAATATT
* * ***
9279046 CTAAAAGTGTTAAAAACATTTTAGAGTTTTTCAAGTATAAAAAAATTATTAATA
65 CTAAAAGTGTTAAAAACATTATAAAAAATTTCAAGTATAAAAAAATTATTAATA
*
9279100 AAAAATAAAGTCACTAGTGGTGATTTTATTAA
1 AAAAATAAAGTCACAAGTGGTGATTTTATTAA
9279132 GCTATTTTCT
Statistics
Matches: 129, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
117 90 0.70
118 38 0.29
119 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (118 bp):
AAAAATAAAGTCACAAGTGGTGATTTTATTAAAAATATTCACAGAAAAAATTTTCTAAAATATTC
TAAAAGTGTTAAAAACATTATAAAAAATTTCAAGTATAAAAAAATTATTAATA
Found at i:9280237 original size:15 final size:15
Alignment explanation
Indices: 9280213--9280252 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
9280203 TACATCTAAA
9280213 ATTC-AAAGGTTCGT
1 ATTCAAAAGGTTCGT
9280227 ATTCAAAAGGTTCGT
1 ATTCAAAAGGTTCGT
9280242 ATTCAAAAGGT
1 ATTCAAAAGGT
9280253 CTTATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (15 bp):
ATTCAAAAGGTTCGT
Found at i:9280277 original size:23 final size:21
Alignment explanation
Indices: 9280247--9280313 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 21
9280237 TTCGTATTCA
9280247 AAAGGTCTTATAAATTCACATCT
1 AAAGGTCTTA-AAATTCACAT-T
9280270 AAAGGTCTTAAAGATTCACATT
1 AAAGGTCTTAAA-ATTCACATT
* *
9280292 TAAGAT-TTAAAAATTCACATT
1 AAAGGTCTT-AAAATTCACATT
9280313 A
1 A
9280314 GAGATTCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 11 0.28
22 10 0.26
23 18 0.46
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.34
Consensus pattern (21 bp):
AAAGGTCTTAAAATTCACATT
Found at i:9280318 original size:21 final size:20
Alignment explanation
Indices: 9280258--9280319 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
9280248 AAGGTCTTAT
*
9280258 AAATTCACATCTAAAGGTCTTAA
1 AAATTCACAT-T-AAGAT-TTAA
*
9280281 AGATTCACATTTAAGATTTAA
1 AAATTCACA-TTAAGATTTAA
9280302 AAATTCACATTAGAGATT
1 AAATTCACATTA-AGATT
9280320 CATATCTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 3 0.09
21 17 0.50
22 4 0.12
23 9 0.26
24 1 0.03
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.34
Consensus pattern (20 bp):
AAATTCACATTAAGATTTAA
Found at i:9281191 original size:13 final size:14
Alignment explanation
Indices: 9281173--9281206 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
9281163 TGCAATATTT
*
9281173 ATGAATGCCATG-C
1 ATGAATGCAATGCC
9281186 ATGAATGCAATGCC
1 ATGAATGCAATGCC
9281200 ATGAATG
1 ATGAATG
9281207 TAACTCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (14 bp):
ATGAATGCAATGCC
Found at i:9283246 original size:58 final size:57
Alignment explanation
Indices: 9283183--9283354 Score: 170
Period size: 58 Copynumber: 3.0 Consensus size: 57
9283173 AACCTTAAAA
*
9283183 TCCAAACCTTAAATTTGAAAACCCAAA-CTTCTAAACTCTAAAATCAAAATCCTAAATC
1 TCCAAACCTTAAA-TTG-AAACCCAAACCTTCTAAACCCTAAAATCAAAATCCTAAATC
* * * * * *
9283241 TCCAAACCCTGAAA-CGAAACCTTAAACCTTCCAAACCCTAAAATCAAAACCCAAAATC
1 TCCAAA-CCTTAAATTGAAACC-CAAACCTTCTAAACCCTAAAATCAAAATCCTAAATC
* * **
9283299 TCCAAACTTTAAAATT-AAGCCCTAAACCCCCTAAACCCTAAAATCAAAATCCTAAA
1 TCCAAACCTT-AAATTGAAACCC-AAACCTTCTAAACCCTAAAATCAAAATCCTAAA
9283355 CCCTCAAAAC
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
56 5 0.05
57 6 0.07
58 74 0.81
59 6 0.07
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (57 bp):
TCCAAACCTTAAATTGAAACCCAAACCTTCTAAACCCTAAAATCAAAATCCTAAATC
Found at i:9283247 original size:29 final size:29
Alignment explanation
Indices: 9283200--9283409 Score: 153
Period size: 29 Copynumber: 7.3 Consensus size: 29
9283190 CTTAAATTTG
* * *
9283200 AAAACCC-AAACTTCTAAACTCTAAAATC
1 AAAACCCTAAACCTCCAAACCCTAAAATC
* * *
9283228 AAAATCCTAAATCTCCAAACCCTGAAA-C
1 AAAACCCTAAACCTCCAAACCCTAAAATC
* *
9283256 GAAACCTTAAACCTTCCAAACCCTAAAATC
1 AAAACCCTAAACC-TCCAAACCCTAAAATC
* * **
9283286 AAAACCCAAAATCTCCAAACTTTAAAAT-
1 AAAACCCTAAACCTCCAAACCCTAAAATC
* * *
9283314 TAAGCCCTAAACCCCCTAAACCCTAAAATC
1 AAAACCCTAAACCTCC-AAACCCTAAAATC
* * **
9283344 AAAATCCTAAACCCTCAAAACTTTAAAA-C
1 AAAACCCTAAA-CCTCCAAACCCTAAAATC
*
9283373 TAAACCCTAAACCTCCAAA-CCTCAAAAT-
1 AAAACCCTAAACCTCCAAACCCT-AAAATC
*
9283401 GAAACCCTA
1 AAAACCCTA
9283410 CACCCTTTTA
Statistics
Matches: 137, Mismatches: 37, Indels: 16
0.72 0.19 0.08
Matches are distributed among these distances:
27 1 0.01
28 46 0.34
29 60 0.44
30 27 0.20
31 3 0.02
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (29 bp):
AAAACCCTAAACCTCCAAACCCTAAAATC
Found at i:9283400 original size:58 final size:57
Alignment explanation
Indices: 9283201--9283393 Score: 217
Period size: 58 Copynumber: 3.4 Consensus size: 57
9283191 TTAAATTTGA
* * * ** * *
9283201 AAACCC-AAACTTCTAAACTCTAAAATCAAAATCCTAAATCTCCAAACCCTGAAACG
1 AAACCCTAAACCTCCAAACCCTAAAATCAAAATCCTAAATCTCCAAACTTTAAAACT
* * * *
9283257 AAACCTTAAACCTTCCAAACCCTAAAATCAAAACCCAAAATCTCCAAACTTTAAAATT
1 AAACCCTAAACC-TCCAAACCCTAAAATCAAAATCCTAAATCTCCAAACTTTAAAACT
* * * *
9283315 AAGCCCTAAACCCCCTAAACCCTAAAATCAAAATCCTAAACCCTCAAAACTTTAAAACT
1 AAACCCTAAACCTCC-AAACCCTAAAATCAAAATCCTAAA-TCTCCAAACTTTAAAACT
9283374 AAACCCTAAACCTCCAAACC
1 AAACCCTAAACCTCCAAACC
9283394 TCAAAATGAA
Statistics
Matches: 112, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
56 5 0.04
57 6 0.05
58 73 0.65
59 28 0.25
ACGTcount: A:0.47, C:0.33, G:0.02, T:0.19
Consensus pattern (57 bp):
AAACCCTAAACCTCCAAACCCTAAAATCAAAATCCTAAATCTCCAAACTTTAAAACT
Found at i:9283490 original size:31 final size:31
Alignment explanation
Indices: 9283455--9283559 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 31
9283445 CGTTAAAACT
9283455 AAAACCTTAAATCCTTAAAATCCCAAAATCG
1 AAAACCTTAAATCCTTAAAATCCCAAAATCG
* * *
9283486 AAAACCTTAAAGCTTTTAAA-CCCTAAAATC-
1 AAAACCTTAAATCCTTAAAATCCC-AAAATCG
* ** *
9283516 AAAA--TTAAACCCTCCAAATCCCAAAATTG
1 AAAACCTTAAATCCTTAAAATCCCAAAATCG
9283545 -AAACCTTAAATCCTT
1 AAAACCTTAAATCCTT
9283560 CAAACCTTGA
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
28 18 0.31
29 3 0.05
30 15 0.25
31 23 0.39
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.25
Consensus pattern (31 bp):
AAAACCTTAAATCCTTAAAATCCCAAAATCG
Found at i:9283650 original size:7 final size:7
Alignment explanation
Indices: 9283640--9283690 Score: 50
Period size: 7 Copynumber: 7.0 Consensus size: 7
9283630 AACCCTAATC
9283640 CCAAAAT
1 CCAAAAT
9283647 CCAAAAT
1 CCAAAAT
* *
9283654 CCTAAAC
1 CCAAAAT
9283661 CCTAAAAT
1 CC-AAAAT
9283669 CCAAAA-
1 CCAAAAT
9283675 CCTTAAAAT
1 CC--AAAAT
9283684 CCAAAAT
1 CCAAAAT
9283691 TGTAAAGACC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
6 2 0.06
7 23 0.64
8 9 0.25
9 2 0.06
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (7 bp):
CCAAAAT
Found at i:9283667 original size:15 final size:15
Alignment explanation
Indices: 9283627--9283689 Score: 69
Period size: 15 Copynumber: 4.3 Consensus size: 15
9283617 ATCTGAAACT
9283627 CAAAACCCT--AATCC
1 CAAAACCCTAAAAT-C
*
9283641 CAAAATCC-AAAATC
1 CAAAACCCTAAAATC
*
9283655 CTAAACCCTAAAATC
1 CAAAACCCTAAAATC
*
9283670 CAAAACCTTAAAATC
1 CAAAACCCTAAAATC
9283685 CAAAA
1 CAAAA
9283690 TTGTAAAGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 14 0.34
15 27 0.66
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (15 bp):
CAAAACCCTAAAATC
Found at i:9287033 original size:4 final size:4
Alignment explanation
Indices: 9287008--9287082 Score: 71
Period size: 4 Copynumber: 18.8 Consensus size: 4
9286998 GTTTTGTCAG
* * ** *
9287008 TCAT GCAT TCAC TCACT T-AT TCAT TCAT TCAT TCAT TCAT TTGT GCAT
1 TCAT TCAT TCAT TCA-T TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
* *
9287056 TCAT TCAT TCAT TTAT TTAT TCAT TCA
1 TCAT TCAT TCAT TCAT TCAT TCAT TCA
9287083 ATATAATGCA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
3 2 0.04
4 54 0.95
5 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.04, T:0.49
Consensus pattern (4 bp):
TCAT
Found at i:9288623 original size:16 final size:16
Alignment explanation
Indices: 9288580--9288626 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 16
9288570 TCCCAATCTT
9288580 CATAAAAAAAATC--A
1 CATAAAAAAAATCAAA
*
9288594 CA-AAGAAAAA--AAA
1 CATAAAAAAAATCAAA
9288607 CATAAAAAAAATCAAA
1 CATAAAAAAAATCAAA
9288623 CATA
1 CATA
9288627 GTCTTCCCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 10 0.38
14 9 0.35
16 7 0.27
ACGTcount: A:0.74, C:0.13, G:0.02, T:0.11
Consensus pattern (16 bp):
CATAAAAAAAATCAAA
Found at i:9289748 original size:21 final size:20
Alignment explanation
Indices: 9289722--9289785 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
9289712 TCTTTAAACC
9289722 CTAAAATCCAAACCTTAAAT
1 CTAAAATCCAAACCTTAAAT
* * *
9289742 TTGAAAACCCAAACTTCTAAAT
1 CT-AAAATCCAAACCT-TAAAT
* *
9289764 CTAAAATCAAAACCCTAAAT
1 CTAAAATCCAAACCTTAAAT
9289784 CT
1 CT
9289786 CCAAACCCTG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 8 0.24
21 20 0.59
22 6 0.18
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (20 bp):
CTAAAATCCAAACCTTAAAT
Found at i:9289793 original size:15 final size:14
Alignment explanation
Indices: 9289773--9289849 Score: 50
Period size: 15 Copynumber: 5.3 Consensus size: 14
9289763 TCTAAAATCA
9289773 AAACCCTAAATCTCC
1 AAACCCTAAA-CTCC
*
9289788 AAACCCTGAAA--CA
1 AAACCCT-AAACTCC
*
9289801 AAACCCTAAACCCTC
1 AAACCCTAAACTC-C
* *
9289816 AAAGCCCTAAAATCG
1 AAA-CCCTAAACTCC
*
9289831 AAACCCAAAATCTCC
1 AAACCCTAAA-CTCC
9289846 AAAC
1 AAAC
9289850 TTTAAAATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
12 3 0.06
13 8 0.17
14 7 0.15
15 19 0.40
16 11 0.23
ACGTcount: A:0.47, C:0.36, G:0.04, T:0.13
Consensus pattern (14 bp):
AAACCCTAAACTCC
Found at i:9289929 original size:59 final size:57
Alignment explanation
Indices: 9289764--9289935 Score: 191
Period size: 58 Copynumber: 2.9 Consensus size: 57
9289754 ACTTCTAAAT
** * ** * *
9289764 CTAAAATCAAAACCCTAAATCTCCAAACCCTGAAACAAAACCCTAAACCCTCAAAGCC
1 CTAAAATCAAAA-CCTAAATCTCCAAACTTTAAAATTAAACCCTAAACCCCCAAAACC
* * *
9289822 CTAAAATCGAAACCCAAAATCTCCAAACTTTAAAATTAAGCCCTAAACCCCCAAAACC
1 CTAAAATC-AAAACCTAAATCTCCAAACTTTAAAATTAAACCCTAAACCCCCAAAACC
* * *
9289880 CTAAAATCAAAATCCTAAACCCTCCAAACTTTAAAATTAAACCCCAAACCTCCAAA
1 CTAAAATCAAAA-CCTAAA-TCTCCAAACTTTAAAATTAAACCCTAAACCCCCAAA
9289936 CCTCAAAATG
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.03
58 57 0.60
59 35 0.37
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.17
Consensus pattern (57 bp):
CTAAAATCAAAACCTAAATCTCCAAACTTTAAAATTAAACCCTAAACCCCCAAAACC
Found at i:9289933 original size:28 final size:28
Alignment explanation
Indices: 9289715--9289954 Score: 146
Period size: 28 Copynumber: 8.4 Consensus size: 28
9289705 CGCATTTTCT
* *
9289715 TTAAACCCTAAA-ATCCAAACCTTAAAT
1 TTAAACCCTAAACCTCCAAACCTTAAAA
* * *
9289742 TTGAAAACCC-AAACTTCTAAATC-TAAAA
1 TT--AAACCCTAAACCTCCAAACCTTAAAA
* * * *
9289770 TCAAAACCCTAAATCTCCAAACCCTGAAA
1 T-TAAACCCTAAACCTCCAAACCTTAAAA
** *
9289799 CAAAACCCTAAACC-CTCAAAGCCCTAAAA
1 TTAAACCCTAAACCTC-CAAA-CCTTAAAA
* * * *
9289828 TCGAAACCCAAAATCTCCAAACTTTAAAA
1 T-TAAACCCTAAACCTCCAAACCTTAAAA
* * *
9289857 TTAAGCCCTAAACCCCCAAAACCCTAAAA
1 TTAAACCCTAAACCTCC-AAACCTTAAAA
* * *
9289886 TCAAAATCCTAAACCCTCCAAACTTTAAAA
1 T-TAAACCCTAAA-CCTCCAAACCTTAAAA
* *
9289916 TTAAACCCCAAACCTCCAAACCTCAAAA
1 TTAAACCCTAAACCTCCAAACCTTAAAA
*
9289944 TGAAACCCTAA
1 TTAAACCCTAA
9289955 GCCCTGTAAG
Statistics
Matches: 161, Mismatches: 39, Indels: 25
0.72 0.17 0.11
Matches are distributed among these distances:
27 9 0.06
28 67 0.42
29 48 0.30
30 32 0.20
31 5 0.03
ACGTcount: A:0.47, C:0.32, G:0.03, T:0.19
Consensus pattern (28 bp):
TTAAACCCTAAACCTCCAAACCTTAAAA
Found at i:9290016 original size:30 final size:30
Alignment explanation
Indices: 9289946--9290019 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 30
9289936 CCTCAAAATG
** * * *
9289946 AAACCCTAAGCCCTGTAAGCCTTAAAATTG
1 AAACCCTAAATCCTATAAGCCTTAAAACTA
** *
9289976 AAACATTAAATCCTATAAGCGTTAAAACTA
1 AAACCCTAAATCCTATAAGCCTTAAAACTA
9290006 AAACCCTAAATCCT
1 AAACCCTAAATCCT
9290020 TCAAATCCTA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.24
Consensus pattern (30 bp):
AAACCCTAAATCCTATAAGCCTTAAAACTA
Found at i:9290032 original size:30 final size:30
Alignment explanation
Indices: 9289998--9290113 Score: 94
Period size: 31 Copynumber: 3.9 Consensus size: 30
9289988 CTATAAGCGT
**
9289998 TAAAACTAAAACCCTAAATCCTTCAAATCC
1 TAAAACTAAAACTTTAAATCCTTCAAATCC
* * * *
9290028 TAAAATCAAAAACTTTAAAGCTTTCAAACCC
1 TAAAA-CTAAAACTTTAAATCCTTCAAATCC
*
9290059 TAAAA-TCAAAA--TTAAACCCTTCAAATCC
1 TAAAACT-AAAACTTTAAATCCTTCAAATCC
* * * *
9290087 CAAAATTGAAACTGTAAATCCTTCAAA
1 TAAAACTAAAACTTTAAATCCTTCAAA
9290114 CCCTGAAATC
Statistics
Matches: 67, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
28 21 0.31
29 1 0.01
30 21 0.31
31 24 0.36
ACGTcount: A:0.48, C:0.24, G:0.03, T:0.25
Consensus pattern (30 bp):
TAAAACTAAAACTTTAAATCCTTCAAATCC
Found at i:9290123 original size:58 final size:59
Alignment explanation
Indices: 9290012--9290127 Score: 153
Period size: 58 Copynumber: 2.0 Consensus size: 59
9290002 ACTAAAACCC
* * * *
9290012 TAAATCCTTCAAATCCTAAAATCAAAAACTTTAAAGCTTTCAAACCCTAAAATCAAAAT
1 TAAACCCTTCAAATCCCAAAATCAAAAACTGTAAAGCCTTCAAACCCTAAAATCAAAAT
** * *
9290071 TAAACCCTTCAAATCCCAAAAT-TGAAACTGTAAATCCTTCAAACCCTGAAATCAAAA
1 TAAACCCTTCAAATCCCAAAATCAAAAACTGTAAAGCCTTCAAACCCTAAAATCAAAA
9290128 AGATAAAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 29 0.59
59 20 0.41
ACGTcount: A:0.47, C:0.24, G:0.03, T:0.25
Consensus pattern (59 bp):
TAAACCCTTCAAATCCCAAAATCAAAAACTGTAAAGCCTTCAAACCCTAAAATCAAAAT
Found at i:9295988 original size:16 final size:17
Alignment explanation
Indices: 9295964--9295997 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9295954 CTTATTCTTA
9295964 ATTACTTTTATTAATTT
1 ATTACTTTTATTAATTT
*
9295981 ATTA-TTTTTTTAATTT
1 ATTACTTTTATTAATTT
9295997 A
1 A
9295998 AATATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTACTTTTATTAATTT
Found at i:9296178 original size:22 final size:22
Alignment explanation
Indices: 9296153--9296199 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
9296143 AAAAATAGAT
* * *
9296153 AATAAAATATATAATTCACTAA
1 AATAAAATACACAATTCAATAA
9296175 AATAAAATACACAATTCAATAA
1 AATAAAATACACAATTCAATAA
9296197 AAT
1 AAT
9296200 TCAATAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.28
Consensus pattern (22 bp):
AATAAAATACACAATTCAATAA
Found at i:9297691 original size:62 final size:61
Alignment explanation
Indices: 9297611--9297771 Score: 148
Period size: 62 Copynumber: 2.6 Consensus size: 61
9297601 TAATGTCTTT
* * * * *
9297611 CTATCATAATT-TCAAAAATACCCATCCTATCGATAATTACT-AGAATTACCATAATACCCATC
1 CTATCATAATTAT-GAAAATACCCATCATA-CCATAATTAATCAAAATTACCATAATACCC-TC
** * *
9297673 CTATCATAATTATGAAAATACCTTTCATACCATAATTAATCAAAATTACTATAATACCCTT
1 CTATCATAATTATGAAAATACCCATCATACCATAATTAATCAAAATTACCATAATACCCTC
* * *
9297734 TTAATCATAATTATGAAAATGCCCCT-ACTACCATAATT
1 CT-ATCATAATTATGAAAATACCCATCA-TACCATAATT
9297772 GATAAAAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
61 12 0.15
62 69 0.84
63 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.34
Consensus pattern (61 bp):
CTATCATAATTATGAAAATACCCATCATACCATAATTAATCAAAATTACCATAATACCCTC
Found at i:9298185 original size:129 final size:126
Alignment explanation
Indices: 9297866--9298199 Score: 363
Period size: 129 Copynumber: 2.6 Consensus size: 126
9297856 TTTTGTTTTA
* * * * * *
9297866 AAATTACTATAATGCTCTTATTAAATTACGTACTAAATTTTAAGATAATATAAAACTAA-CCACA
1 AAATTACTATAATGCCCTTATTAAATTACATA-TAAATTTTAACATAATATAAAATTAATACATA
* *
9297930 TTAAAATATTAAAATATCATTGCCATTACTGTATAGAAATTTGACATATGACATTTTATTTGC
65 TTAAATTACTAAAATATCATTGCCA-TACTGTATAGAAATTTGACATATGACATTTTATTTGC
* * ** * *
9297993 AAATTAGT-TACTAACCTTATTAAATTATATATGAAATTTTAACACAATATAAAATTAACTACAT
1 AAATTACTATAATGCCCTTATTAAATTACATAT-AAATTTTAACATAATATAAAATTAA-TACAT
* * * *
9298057 ATTAAATTACTAAAATATCTTTGCCA-A-TGTTTCAAGAAATTTGACATGTGGCCATTTTATTTG
64 ATTAAATTACTAAAATATCATTGCCATACTGTAT--AGAAATTTGACATAT-GACATTTTATTTG
9298120 -
126 C
* *
9298120 AAATTTACTATAATGCCCTTATCAAATTACATATAATATTTTAACATAATATAAAGTTAATTACA
1 AAA-TTACTATAATGCCCTTATTAAATTACATATAA-ATTTTAACATAATATAAAATTAA-TACA
9298185 TATTAAATTACTAAA
63 TATTAAATTACTAAA
9298200 TTACTCTTAC
Statistics
Matches: 171, Mismatches: 27, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
125 5 0.03
126 40 0.23
127 24 0.14
128 43 0.25
129 59 0.35
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (126 bp):
AAATTACTATAATGCCCTTATTAAATTACATATAAATTTTAACATAATATAAAATTAATACATAT
TAAATTACTAAAATATCATTGCCATACTGTATAGAAATTTGACATATGACATTTTATTTGC
Found at i:9298243 original size:129 final size:127
Alignment explanation
Indices: 9297865--9298280 Score: 312
Period size: 129 Copynumber: 3.3 Consensus size: 127
9297855 TTTTTGTTTT
* * * * * * *
9297865 AAAATTACTATAATGCTCTTATTAAATTACGTACT-AAATTTTAAGATAATATAAAACTAAC--C
1 AAAATTACTATAATACCCTTATCAAATTACATA-TGAAATTTTAACACAATATAAAATTAACTAC
* * * * * * * * *
9297927 ACATTAAAATATTAAAATATCATTGCCATTACTGT-ATAGAAATTTGACATAT-GACATTTTATT
65 ATATTAAATTACTAAAATATCTTTGACAATGCT-TCA-AGAAATTTGACATGTGGCCATTTTA--
*
9297990 TG
126 TA
* * * * * *
9297992 CAAATTAGT-TACTAACCTTATTAAATTATATATGAAATTTTAACACAATATAAAATTAACTACA
1 AAAATTACTATAATACCCTTATCAAATTACATATGAAATTTTAACACAATATAAAATTAACTACA
* * *
9298056 TATTAAATTACTAAAATATCTTTGCCAATGTTTCAAGAAATTTGACATGTGGCCATTTTATTTG
66 TATTAAATTACTAAAATATCTTTGACAATGCTTCAAGAAATTTGACATGTGGCCATTTTA--TA
* * * * *
9298120 AAATTTACTATAATGCCCTTATCAAATTACATAT-AATATTTTAACATAATATAAAGTTAATTAC
1 AAAATTACTATAATACCCTTATCAAATTACATATGAA-ATTTTAACACAATATAAAATTAACTAC
* * * * *
9298184 ATATTAAATTACTAAATTA-CTCTT-ACAATCGCTTCATGAAAATTTGATATTTGG-TATTTTAT
65 ATATTAAATTACTAAAATATCT-TTGACAAT-GCTTCAAG-AAATTTGACATGTGGCCATTTTAT
9298246 A
127 A
* * *
9298247 AAAATTACTATAATACTCTAATGAAATTACATAT
1 AAAATTACTATAATACCCTTATCAAATTACATAT
9298281 TTAATTAATT
Statistics
Matches: 235, Mismatches: 44, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
125 1 0.00
126 40 0.17
127 52 0.22
128 54 0.23
129 75 0.32
130 13 0.06
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (127 bp):
AAAATTACTATAATACCCTTATCAAATTACATATGAAATTTTAACACAATATAAAATTAACTACA
TATTAAATTACTAAAATATCTTTGACAATGCTTCAAGAAATTTGACATGTGGCCATTTTATA
Found at i:9299806 original size:15 final size:16
Alignment explanation
Indices: 9299776--9299809 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
9299766 ACTTTCAACT
9299776 AAAAAAAAAACCAAAAG
1 AAAAAAAAAA-CAAAAG
9299793 AAAAAAAAAA-AAAAG
1 AAAAAAAAAACAAAAG
9299808 AA
1 AA
9299810 GTTTAACAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAACAAAAG
Found at i:9302923 original size:13 final size:13
Alignment explanation
Indices: 9302905--9302934 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
9302895 ATTTATCCTT
9302905 TACACTATATTTA
1 TACACTATATTTA
9302918 TACACTATATTTA
1 TACACTATATTTA
9302931 TACA
1 TACA
9302935 TCAGTTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (13 bp):
TACACTATATTTA
Found at i:9303938 original size:23 final size:23
Alignment explanation
Indices: 9303908--9303958 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
9303898 GTTAGGATGT
9303908 AGTTTTGAAATTTTATTTAATAA
1 AGTTTTGAAATTTTATTTAATAA
*
9303931 AGTTTTGAAATTTTATTTCATAA
1 AGTTTTGAAATTTTATTTAATAA
9303954 AGTTT
1 AGTTT
9303959 CGAATTGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (23 bp):
AGTTTTGAAATTTTATTTAATAA
Found at i:9311347 original size:15 final size:15
Alignment explanation
Indices: 9311327--9311382 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
9311317 TAGTACGCTT
*
9311327 AAAAAAA-AAGAGAA
1 AAAAAAAGAAAAGAA
9311341 AAAAAAAGAAAAGAA
1 AAAAAAAGAAAAGAA
*
9311356 AAAAAATGAATGAATGAA
1 AAAAAAAGAA--AA-GAA
9311374 AAAAAAAGA
1 AAAAAAAGA
9311383 GAATTTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.20
15 15 0.43
17 2 0.06
18 11 0.31
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.05
Consensus pattern (15 bp):
AAAAAAAGAAAAGAA
Found at i:9312655 original size:38 final size:38
Alignment explanation
Indices: 9312584--9312656 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
9312574 TTGTTGAGCC
* ***
9312584 TCTGTTTAGAGGAGCCTTTTGTATTTTTTAAAAAAACT
1 TCTGTTTAGAGGAGCCTTTTATATTTAAAAAAAAAACT
*
9312622 TCTGTTTAGAGTAGCCTTTTATATTTAAAAAAAAA
1 TCTGTTTAGAGGAGCCTTTTATATTTAAAAAAAAA
9312657 GTCGTTGAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (38 bp):
TCTGTTTAGAGGAGCCTTTTATATTTAAAAAAAAAACT
Found at i:9312909 original size:3 final size:3
Alignment explanation
Indices: 9312901--9312956 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
9312891 TATAAGATTT
* *
9312901 TAC TAC TAC TAC TAC TAT TAC TAC TAC TAC TAT TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
9312949 TAC TAC TA
1 TAC TAC TA
9312957 TTATTATTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.38
Consensus pattern (3 bp):
TAC
Found at i:9313910 original size:19 final size:21
Alignment explanation
Indices: 9313873--9313918 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
9313863 TATTTGTTTA
9313873 TTTTTTATGGTTTTCATTTT-
1 TTTTTTATGGTTTTCATTTTC
9313893 TTTTTTAT-GTTATT-ATTTTC
1 TTTTTTATGGTT-TTCATTTTC
9313913 TTTTTT
1 TTTTTT
9313919 TTATTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (21 bp):
TTTTTTATGGTTTTCATTTTC
Found at i:9314019 original size:13 final size:13
Alignment explanation
Indices: 9313987--9314019 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
9313977 TAGAGAAAAA
*
9313987 TAATAATAAAGTT
1 TAATAAAAAAGTT
9314000 T-ATAAAAAAGTT
1 TAATAAAAAAGTT
9314012 TAATAAAA
1 TAATAAAA
9314020 TTTTTAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (13 bp):
TAATAAAAAAGTT
Found at i:9314190 original size:3 final size:3
Alignment explanation
Indices: 9314176--9314233 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
9314166 GTAATGTTTC
*
9314176 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9314224 AAT AAT AAT A
1 AAT AAT AAT A
9314234 TTTATTTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9322791 original size:32 final size:31
Alignment explanation
Indices: 9322750--9322847 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 31
9322740 AAATAAGAAG
*
9322750 AAAGAAAAAAAAAGGATAATTTTTATGCAAGT
1 AAAGAAAAAAAAA-GATAATTTTCATGCAAGT
9322782 AAAGAAAAAATAAAGATAATTTTCATGCAAGT
1 AAAGAAAAAA-AAAGATAATTTTCATGCAAGT
9322814 AAAGAAAAAAAAAAGATAATTTTCATGCAAGT
1 AAAG-AAAAAAAAAGATAATTTTCATGCAAGT
9322846 AA
1 AA
9322848 TGACACCTTA
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
32 54 0.86
33 9 0.14
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.23
Consensus pattern (31 bp):
AAAGAAAAAAAAAGATAATTTTCATGCAAGT
Found at i:9325726 original size:49 final size:48
Alignment explanation
Indices: 9325637--9325741 Score: 117
Period size: 49 Copynumber: 2.2 Consensus size: 48
9325627 TTATATATTT
* *
9325637 TAATTTTTTTACCTATACCGACAGTTAACACTTGTCAGTATAGACTTA
1 TAATTTTTTTACCTATACCAACAGTTAACACTTGTCAGTATAAACTTA
* * *
9325685 TAATTTTTCTTACCTATACCAAC-GTTTAGCA-TCTGTTAGTATAAACTTG
1 TAATTTTT-TTACCTATACCAACAG-TTAACACT-TGTCAGTATAAACTTA
9325734 T-ATTTTTT
1 TAATTTTTT
9325742 AATTTTCTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
47 1 0.02
48 16 0.33
49 32 0.65
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (48 bp):
TAATTTTTTTACCTATACCAACAGTTAACACTTGTCAGTATAAACTTA
Found at i:9325781 original size:55 final size:55
Alignment explanation
Indices: 9325689--9325806 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
9325679 GACTTATAAT
* * * * **
9325689 TTTTCTTACCTATACCAACGTTTAGCATCTGTTAGTATA-AACTTGTATTTTTTAA
1 TTTTCTTACCTATACCAACGATTAGAAACTGTAAGTATAGAA-TTGTATGCTTTAA
* *
9325744 TTTTCTTACCTATATCAATGATTAGAAACTGTAAGTATAGAATTGTATGCTTTAA
1 TTTTCTTACCTATACCAACGATTAGAAACTGTAAGTATAGAATTGTATGCTTTAA
9325799 -TTTCTTAC
1 TTTTCTTAC
9325807 TTTTACTGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 8 0.15
55 44 0.81
56 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (55 bp):
TTTTCTTACCTATACCAACGATTAGAAACTGTAAGTATAGAATTGTATGCTTTAA
Found at i:9326162 original size:15 final size:15
Alignment explanation
Indices: 9326142--9326177 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
9326132 TACCAAGTTT
*
9326142 GATAAAACAAACATC
1 GATAAAACAAACATA
9326157 GATAAAACAAACATA
1 GATAAAACAAACATA
9326172 GATAAA
1 GATAAA
9326178 GAGTTACACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.14, G:0.08, T:0.14
Consensus pattern (15 bp):
GATAAAACAAACATA
Found at i:9333808 original size:63 final size:61
Alignment explanation
Indices: 9333721--9333900 Score: 182
Period size: 63 Copynumber: 2.9 Consensus size: 61
9333711 TTATAAAAAA
* * *
9333721 TTAAATAGGGTTATTGAAGGCATTTCTAGCTAGAAATACCTTGAATAA-GCCTTATAAATTTTT
1 TTAAATA-GATTATTGAAGGCATTTTTAGCTAGAAATACCTTGAATAATCCCTT-T-AATTTTT
* * * * *
9333784 TATAAATAGATTATTGAAGGCATTTTTGGCTAAAAATGCCTTCAATAATCCCTTTCATTTTT
1 T-TAAATAGATTATTGAAGGCATTTTTAGCTAGAAATACCTTGAATAATCCCTTTAATTTTT
* * * * *
9333846 TTAGATGGGATTATTAAAGGTATTTTTAGCTAGAAAATACCTTGAATTATCCCTT
1 TTAAAT-AGATTATTGAAGGCATTTTTAGCTAG-AAATACCTTGAATAATCCCTT
9333901 ACAAAATATT
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
61 4 0.04
62 28 0.29
63 54 0.56
64 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (61 bp):
TTAAATAGATTATTGAAGGCATTTTTAGCTAGAAATACCTTGAATAATCCCTTTAATTTTT
Found at i:9334928 original size:26 final size:26
Alignment explanation
Indices: 9334873--9334930 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
9334863 TATTATTTAT
*
9334873 ATTCTTTAATATAGATTTTTTTTTGCC
1 ATTCCTTAATATAGATTTTTTTTT-CC
* *
9334900 ATTCCTTATTATATATTTTTTTATT-C
1 ATTCCTTAATATAGATTTTTTT-TTCC
9334926 ATTCC
1 ATTCC
9334931 ACTGTCACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 19 0.70
28 2 0.07
ACGTcount: A:0.22, C:0.14, G:0.03, T:0.60
Consensus pattern (26 bp):
ATTCCTTAATATAGATTTTTTTTTCC
Found at i:9338369 original size:12 final size:12
Alignment explanation
Indices: 9338352--9338393 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
9338342 TCAAAAAAAT
9338352 TGAATATTTATA
1 TGAATATTTATA
9338364 TGAATATTTATA
1 TGAATATTTATA
*
9338376 CGAATATATTTATA
1 TG-A-ATATTTATA
9338390 TGAA
1 TGAA
9338394 CATAGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 14 0.54
13 2 0.08
14 10 0.38
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (12 bp):
TGAATATTTATA
Found at i:9342926 original size:36 final size:38
Alignment explanation
Indices: 9342846--9342927 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
9342836 TTACTAATTC
* *
9342846 TAAATAAACATGTTTAAACAGAGAAAACCATGATAGTT
1 TAAATAAACATATCTAAACAGAGAAAACCATGATAGTT
* *
9342884 TGAATAAACATATCTAAATAGA-AAAA-CATGATTA-TT
1 TAAATAAACATATCTAAACAGAGAAAACCATGA-TAGTT
9342920 TAAATAAA
1 TAAATAAA
9342928 GTTTATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
36 14 0.37
37 6 0.16
38 18 0.47
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.28
Consensus pattern (38 bp):
TAAATAAACATATCTAAACAGAGAAAACCATGATAGTT
Found at i:9344256 original size:2 final size:2
Alignment explanation
Indices: 9344244--9344279 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
9344234 TATTTCATGG
* *
9344244 TA TA AA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9344280 CTCCTTAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:9344839 original size:21 final size:21
Alignment explanation
Indices: 9344810--9344904 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 21
9344800 ATAATTTTGG
* *
9344810 TTTTTATAACTTTTGATAAAA
1 TTTTGATAACTTTTGATATAA
* **
9344831 TTTTGATAAGC-TTCGATGCAA
1 TTTTGATAA-CTTTTGATATAA
* *
9344852 TTTTGATAATCTTTTTATATTA
1 TTTTGATAA-CTTTTGATATAA
* * *
9344874 GTTTGATAAGTTATGATATAA
1 TTTTGATAACTTTTGATATAA
*
9344895 TTTTGGTAAC
1 TTTTGATAAC
9344905 ATCTTAATGT
Statistics
Matches: 54, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
21 40 0.74
22 14 0.26
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (21 bp):
TTTTGATAACTTTTGATATAA
Found at i:9345273 original size:22 final size:22
Alignment explanation
Indices: 9345205--9345397 Score: 131
Period size: 22 Copynumber: 8.8 Consensus size: 22
9345195 ATAACAATAC
* * * *
9345205 TTATCAATGATTTACAATTAAG
1 TTATCAGTGATTTACTACTAAA
** *
9345227 TTATCA-TAGATTTACTTTTATA
1 TTATCAGT-GATTTACTACTAAA
* * *
9345249 TTATTAGCGATTTAGTACTAAA
1 TTATCAGTGATTTACTACTAAA
* * *
9345271 TTATCAGTGATATATTAGTAAA
1 TTATCAGTGATTTACTACTAAA
9345293 TTATCAGTGATTTACTACTAAA
1 TTATCAGTGATTTACTACTAAA
* * *
9345315 TTAGCATTGATTTACTA-TTAA
1 TTATCAGTGATTTACTACTAAA
* * *
9345336 TTAACGAATGATTTACTACTAAG
1 TTATC-AGTGATTTACTACTAAA
* * *
9345359 TTATGAATGATTTATTACTAAA
1 TTATCAGTGATTTACTACTAAA
*
9345381 TTAT-TGATGATTTACTA
1 TTATCAG-TGATTTACTA
9345398 ATAAGTTACT
Statistics
Matches: 134, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
21 8 0.06
22 121 0.90
23 5 0.04
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (22 bp):
TTATCAGTGATTTACTACTAAA
Found at i:9345391 original size:44 final size:43
Alignment explanation
Indices: 9345257--9345428 Score: 134
Period size: 44 Copynumber: 3.9 Consensus size: 43
9345247 TATTATTAGC
* * * * *
9345257 GATTTAGTACTAAATTATCAGTGATATATTAGTAAATTA-TCAGT
1 GATTTACTACTAAATTATGAATGATTTATTA-TAAATTATTGA-T
* * * **
9345301 GATTTACTACTAAATTA-GCATTGATTTACTATTAATTAACGAAT
1 GATTTACTACTAAATTATG-AATGATTTATTATAAATTATTG-AT
*
9345345 GATTTACTACTAAGTTATGAATGATTTATTACTAAATTATTGAT
1 GATTTACTACTAAATTATGAATGATTTATTA-TAAATTATTGAT
* * *
9345389 GATTTACTAATAAGTTACTG-ATGATTTGTTATAAAGTTAT
1 GATTTACTACTAAATTA-TGAATGATTTATTATAAA-TTAT
9345429 AATCACTTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 10 0.10
44 84 0.80
45 11 0.10
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (43 bp):
GATTTACTACTAAATTATGAATGATTTATTATAAATTATTGAT
Found at i:9345410 original size:22 final size:22
Alignment explanation
Indices: 9345322--9345471 Score: 96
Period size: 22 Copynumber: 6.8 Consensus size: 22
9345312 AAATTAGCAT
*
9345322 TGATTTACTATTAA-TTAAC-GAA
1 TGATTTACTAATAAGTT-ACTG-A
*
9345344 TGATTTACTACTAAGTTA-TGAA
1 TGATTTACTAATAAGTTACTG-A
* * * *
9345366 TGATTTATTACTAAATTATTGA
1 TGATTTACTAATAAGTTACTGA
9345388 TGATTTACTAATAAGTTACTGA
1 TGATTTACTAATAAGTTACTGA
* * *
9345410 TGATTT-GTTATAAAGTTA-TAA
1 TGATTTACTAAT-AAGTTACTGA
* * *
9345431 TCACTTTACTATTAATTTACTGA
1 TGA-TTTACTAATAAGTTACTGA
9345454 TGATTTACTACA-AAGTTA
1 TGATTTACTA-ATAAGTTA
9345472 TAATCGATTA
Statistics
Matches: 101, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
21 7 0.07
22 84 0.83
23 10 0.10
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.44
Consensus pattern (22 bp):
TGATTTACTAATAAGTTACTGA
Found at i:9345413 original size:66 final size:64
Alignment explanation
Indices: 9345300--9345471 Score: 156
Period size: 66 Copynumber: 2.6 Consensus size: 64
9345290 AAATTATCAG
*
9345300 TGATTTACTACTAAATTA-GCATTGATTTACTATTAA-TTAACGAATGATTTACTACT-AAGTTA
1 TGATTTACTACTAAATTATG-A-TGATTTACTAATAAGTT-ACGAATGATTTACTA-TAAAGTTA
9345362 TGAA
62 T-AA
* **
9345366 TGATTTATTACTAAATTATTGATGATTTACTAATAAGTTACTG-ATGATTTGTTATAAAGTTATA
1 TGATTTACTACTAAATTA-TGATGATTTACTAATAAGTTAC-GAATGATTTACTATAAAGTTATA
9345430 A
64 A
* * *
9345431 TCACTTTACTATTAATTTACTGATGATTTACTACA-AAGTTA
1 TGA-TTTACTACTAAATTA-TGATGATTTACTA-ATAAGTTA
9345472 TAATCGATTA
Statistics
Matches: 90, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
65 5 0.06
66 79 0.88
67 5 0.06
68 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (64 bp):
TGATTTACTACTAAATTATGATGATTTACTAATAAGTTACGAATGATTTACTATAAAGTTATAA
Found at i:9345439 original size:44 final size:43
Alignment explanation
Indices: 9345346--9345484 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 43
9345336 TTAACGAATG
* * *
9345346 ATTTACTACTAAGTTA-TGAATGATTTATTACTAAA-TTATTGATG
1 ATTTACTAATAAGTTACTG-ATGATTTATTA-TAAAGTTA-TAATC
*
9345390 ATTTACTAATAAGTTACTGATGATTTGTTATAAAGTTATAATC
1 ATTTACTAATAAGTTACTGATGATTTATTATAAAGTTATAATC
* * * *
9345433 ACTTTACTATTAATTTACTGATGATTTACTACAAAGTTATAATC
1 A-TTTACTAATAAGTTACTGATGATTTATTATAAAGTTATAATC
9345477 GA-TTACTA
1 -ATTTACTA
9345485 TTAAATCATT
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
43 14 0.17
44 65 0.79
45 3 0.04
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTTACTAATAAGTTACTGATGATTTATTATAAAGTTATAATC
Found at i:9345480 original size:22 final size:22
Alignment explanation
Indices: 9345300--9345484 Score: 82
Period size: 22 Copynumber: 8.5 Consensus size: 22
9345290 AAATTATCAG
*
9345300 TGATTTACTACTAAA-TTAGC-AT
1 TGATTTACTAC-AAAGTTA-CTAA
** *
9345322 TGATTTACTATTAA-TTAACGAA
1 TGATTTACTACAAAGTT-ACTAA
*
9345344 TGATTTACTACTAAGTTA-TGAA
1 TGATTTACTACAAAGTTACT-AA
* * *
9345366 TGATTTATTACTAAA-TTATTGA
1 TGATTTACTAC-AAAGTTACTAA
*
9345388 TGATTTACTA-ATAAGTTACTGA
1 TGATTTACTACA-AAGTTACTAA
** *
9345410 TGATTTGTTATAAAGTTA-TAA
1 TGATTTACTACAAAGTTACTAA
* ** * *
9345431 TCACTTTACTATTAATTTACTGA
1 TGA-TTTACTACAAAGTTACTAA
9345454 TGATTTACTACAAAGTTA-TAA
1 TGATTTACTACAAAGTTACTAA
9345475 TCGA-TTACTA
1 T-GATTTACTA
9345485 TTAAATCATT
Statistics
Matches: 127, Mismatches: 24, Indels: 25
0.72 0.14 0.14
Matches are distributed among these distances:
20 1 0.01
21 20 0.16
22 96 0.76
23 10 0.08
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (22 bp):
TGATTTACTACAAAGTTACTAA
Found at i:9348906 original size:22 final size:22
Alignment explanation
Indices: 9348874--9348966 Score: 91
Period size: 22 Copynumber: 4.3 Consensus size: 22
9348864 AGTAAAAAAA
* *
9348874 ATTTACTACTAAATTATCACTG
1 ATTTACAACTAAATTATCAATG
* *
9348896 ATTTACAACTAAATTATTAGTG
1 ATTTACAACTAAATTATCAATG
* *
9348918 ATTTAC-TCTAAATTATTAAT-
1 ATTTACAACTAAATTATCAATG
* *
9348938 ATTTTACATCTAAAGTATCAATG
1 A-TTTACAACTAAATTATCAATG
9348961 ATTTAC
1 ATTTAC
9348967 TATTATGTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
20 1 0.02
21 17 0.28
22 42 0.69
23 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (22 bp):
ATTTACAACTAAATTATCAATG
Found at i:9348944 original size:43 final size:44
Alignment explanation
Indices: 9348874--9348968 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
9348864 AGTAAAAAAA
* * * *
9348874 ATTTACTACTAAATTATCACTGATTTACAACTAAATTATTAGTG
1 ATTTACTACTAAATTATCAATGATTTACAACTAAAGTATCAATG
* *
9348918 ATTTACT-CTAAATTATTAAT-ATTTTACATCTAAAGTATCAATG
1 ATTTACTACTAAATTATCAATGA-TTTACAACTAAAGTATCAATG
9348961 ATTTACTA
1 ATTTACTA
9348969 TTATGTTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 35 0.81
44 7 0.16
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (44 bp):
ATTTACTACTAAATTATCAATGATTTACAACTAAAGTATCAATG
Found at i:9350018 original size:11 final size:11
Alignment explanation
Indices: 9350002--9350049 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
9349992 AATAAATTTG
9350002 TTGGTATTTTT
1 TTGGTATTTTT
9350013 TTGGTATTTTT
1 TTGGTATTTTT
9350024 GTTGGTAATTATTT
1 -TTGGT-ATT-TTT
*
9350038 TTTG-ATTTTT
1 TTGGTATTTTT
9350048 TT
1 TT
9350050 TAGCGTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
10 5 0.15
11 14 0.42
12 5 0.15
13 6 0.18
14 3 0.09
ACGTcount: A:0.12, C:0.00, G:0.17, T:0.71
Consensus pattern (11 bp):
TTGGTATTTTT
Found at i:9350025 original size:23 final size:24
Alignment explanation
Indices: 9349998--9350047 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
9349988 ATCTAATAAA
9349998 TTTGTTGGT-ATT-TTTTTGGTATT
1 TTTGTTGGTAATTATTTTTGG-ATT
*
9350021 TTTGTTGGTAATTATTTTTTGATT
1 TTTGTTGGTAATTATTTTTGGATT
9350045 TTT
1 TTT
9350048 TTTAGCGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 9 0.38
24 9 0.38
25 6 0.25
ACGTcount: A:0.12, C:0.00, G:0.18, T:0.70
Consensus pattern (24 bp):
TTTGTTGGTAATTATTTTTGGATT
Found at i:9350028 original size:12 final size:12
Alignment explanation
Indices: 9349998--9350030 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
9349988 ATCTAATAAA
9349998 TTTGTTGGTATT
1 TTTGTTGGTATT
9350010 TTT-TTGGTATT
1 TTTGTTGGTATT
9350021 TTTGTTGGTA
1 TTTGTTGGTA
9350031 ATTATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.09, C:0.00, G:0.24, T:0.67
Consensus pattern (12 bp):
TTTGTTGGTATT
Found at i:9351411 original size:12 final size:12
Alignment explanation
Indices: 9351364--9351446 Score: 60
Period size: 12 Copynumber: 6.9 Consensus size: 12
9351354 CAATATTGAC
9351364 TGGATTTGAAAT
1 TGGATTTGAAAT
*
9351376 TGGA-ATGAAAAT
1 TGGATTTG-AAAT
* * *
9351388 TAGATCTAAAAT
1 TGGATTTGAAAT
9351400 TGGATTTGAAAT
1 TGGATTTGAAAT
* * *
9351412 TGAAGTTGAAAC
1 TGGATTTGAAAT
* * *
9351424 TGGAATGGAAAG
1 TGGATTTGAAAT
9351436 TGGATTTGAAA
1 TGGATTTGAAA
9351447 CTAGATTTAG
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
11 2 0.04
12 50 0.94
13 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.25, T:0.31
Consensus pattern (12 bp):
TGGATTTGAAAT
Found at i:9351427 original size:24 final size:24
Alignment explanation
Indices: 9351400--9351454 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
9351390 GATCTAAAAT
*
9351400 TGGATTTGAAATTGAAGTTGAAAC
1 TGGATTTGAAAGTGAAGTTGAAAC
* * * *
9351424 TGGAATGGAAAGTGGATTTGAAAC
1 TGGATTTGAAAGTGAAGTTGAAAC
*
9351448 TAGATTT
1 TGGATTT
9351455 AGGGTTTGTG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.33
Consensus pattern (24 bp):
TGGATTTGAAAGTGAAGTTGAAAC
Found at i:9354002 original size:33 final size:34
Alignment explanation
Indices: 9353925--9354002 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 34
9353915 TCTACCCCTA
*
9353925 CTACCTCAAC-ATTATCTTCAGTTCTTGCCCTTG
1 CTACCTCAACTATTATCTTCAGTTCTTACCCTTG
* *
9353958 CTACTTTAACTA-TATCTTCA-TTCTTTACCCTTG
1 CTACCTCAACTATTATCTTCAGTTC-TTACCCTTG
*
9353991 CTTCCTCAACTA
1 CTACCTCAACTA
9354003 CCTCTTCAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 3 0.08
33 33 0.89
34 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.05, T:0.42
Consensus pattern (34 bp):
CTACCTCAACTATTATCTTCAGTTCTTACCCTTG
Found at i:9355053 original size:31 final size:32
Alignment explanation
Indices: 9355018--9355089 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
9355008 GTCCCTTATA
*
9355018 TTGTTATAAAATTTCTGTTATAAG-TTTTACT
1 TTGTTATAAAATTTCTATTATAAGCTTTTACT
*
9355049 TTGTTATATAATTTCTATTATAAGCTTTTACT
1 TTGTTATAAAATTTCTATTATAAGCTTTTACT
9355081 TTGTTATAA
1 TTGTTATAA
9355090 CCAAGGGTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 22 0.59
32 15 0.41
ACGTcount: A:0.29, C:0.07, G:0.08, T:0.56
Consensus pattern (32 bp):
TTGTTATAAAATTTCTATTATAAGCTTTTACT
Found at i:9355852 original size:42 final size:42
Alignment explanation
Indices: 9355774--9355868 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
9355764 AATATGCCTA
*** *
9355774 AACAGCAGAAAAACCTAACTATAAATTTGAGTAATTAAGAAT
1 AACAGCAGAAAAACCTAACTATAAATCCAAGCAATTAAGAAT
*
9355816 AACAGCA-AAAAATCTTAACTATAAATCCAAGCAATTAAGAAT
1 AACAGCAGAAAAA-CCTAACTATAAATCCAAGCAATTAAGAAT
* *
9355858 TACAGTAGAAA
1 AACAGCAGAAA
9355869 CCCCTAAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 5 0.11
42 36 0.82
43 3 0.07
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.22
Consensus pattern (42 bp):
AACAGCAGAAAAACCTAACTATAAATCCAAGCAATTAAGAAT
Done.