Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 39 of 117
Found at i:9542688 original size:33 final size:35
Alignment explanation
Indices: 9542613--9542688 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 35
9542603 TATTTAATTC
*
9542613 ATATATATATAAATAAAATATATAAATTAAATAAA
1 ATATATATAAAAATAAAATATATAAATTAAATAAA
* *
9542648 A-ATTATATAAAAATAAAA-AT-TTAATTTAATAAA
1 ATA-TATATAAAAATAAAATATATAAATTAAATAAA
9542681 ATATATAT
1 ATATATAT
9542689 TTTTAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
33 17 0.47
34 4 0.11
35 15 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (35 bp):
ATATATATAAAAATAAAATATATAAATTAAATAAA
Found at i:9543588 original size:18 final size:18
Alignment explanation
Indices: 9543553--9543592 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
9543543 TTATTTTCAA
9543553 TTTTCAATTTGATTTATT
1 TTTTCAATTTGATTTATT
*
9543571 CTTTTCCATTTG-TTTATT
1 -TTTTCAATTTGATTTATT
9543589 TTTT
1 TTTT
9543593 AAATGTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 6 0.30
19 10 0.50
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTTCAATTTGATTTATT
Found at i:9545054 original size:20 final size:20
Alignment explanation
Indices: 9545031--9545097 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
9545021 TTTTTATGAT
9545031 TTTAATTGCATGATTATATA
1 TTTAATTGCATGATTATATA
* *
9545051 TTTAGTTGCCTGATTA-AT-
1 TTTAATTGCATGATTATATA
*
9545069 TATTATTTGCATGATTATATA
1 T-TTAATTGCATGATTATATA
9545090 TTTAATTG
1 TTTAATTG
9545098 TATTATTTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 1 0.03
19 15 0.38
20 22 0.56
21 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (20 bp):
TTTAATTGCATGATTATATA
Found at i:9545126 original size:20 final size:20
Alignment explanation
Indices: 9545101--9545138 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9545091 TTAATTGTAT
9545101 TATTTGCAT-GATTAATATTA
1 TATTTGCATAG-TTAATATTA
9545121 TATTTGCATAGTTAATAT
1 TATTTGCATAGTTAATAT
9545139 ATTTGCATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (20 bp):
TATTTGCATAGTTAATATTA
Found at i:9545185 original size:20 final size:20
Alignment explanation
Indices: 9545155--9545213 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
9545145 ATGGTAATTA
9545155 ATATT-TTACAT-AGCATTTT
1 ATATTATTACATGA-CATTTT
*
9545174 ATATTATTACATGATATTTT
1 ATATTATTACATGACATTTT
* *
9545194 ATATTATTGCATGATATTTT
1 ATATTATTACATGACATTTT
9545214 TGCATGGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 5 0.14
20 30 0.83
21 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
ATATTATTACATGACATTTT
Found at i:9545225 original size:14 final size:13
Alignment explanation
Indices: 9545194--9545227 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9545184 ATGATATTTT
*
9545194 ATATTATTGCATG
1 ATATTTTTGCATG
9545207 ATATTTTTGCATGG
1 ATATTTTTGCAT-G
9545221 ATATTTT
1 ATATTTT
9545228 GGTATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (13 bp):
ATATTTTTGCATG
Found at i:9546312 original size:26 final size:26
Alignment explanation
Indices: 9546283--9546336 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
9546273 CATAATAACC
**
9546283 TGTTATATTGTTTTTTGTATATATTA
1 TGTTATATTGTTCGTTGTATATATTA
9546309 TGTTATATTGTTCGTTGTATATATTA
1 TGTTATATTGTTCGTTGTATATATTA
9546335 TG
1 TG
9546337 AATCCTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.02, G:0.15, T:0.61
Consensus pattern (26 bp):
TGTTATATTGTTCGTTGTATATATTA
Found at i:9548756 original size:22 final size:21
Alignment explanation
Indices: 9548728--9548769 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9548718 TTTTTAAAAA
9548728 ATGATGA-AAAATGAAAAAAAGT
1 ATGATGAGAAAA--AAAAAAAGT
9548750 ATGATGAGAAAAAAAAAAAG
1 ATGATGAGAAAAAAAAAAAG
9548770 AAGAACAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (21 bp):
ATGATGAGAAAAAAAAAAAGT
Found at i:9549070 original size:17 final size:16
Alignment explanation
Indices: 9549050--9549089 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
9549040 AAATATGCAT
*
9549050 AAAAAAAGAAAA-TAA
1 AAAAAAAAAAAAGTAA
9549065 AGAAAAAAAAAAAGTAA
1 A-AAAAAAAAAAAGTAA
9549082 AAAAAAAA
1 AAAAAAAA
9549090 TTAAAAAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 17 0.77
17 4 0.18
ACGTcount: A:0.88, C:0.00, G:0.07, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAAAAGTAA
Found at i:9549095 original size:11 final size:12
Alignment explanation
Indices: 9549058--9549097 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
9549048 ATAAAAAAAG
* *
9549058 AAAATAAAGAAA
1 AAAAAAAAGTAA
9549070 AAAAAAAAGTAA
1 AAAAAAAAGTAA
*
9549082 AAAAAAAATTAA
1 AAAAAAAAGTAA
9549094 AAAA
1 AAAA
9549098 GGAAGACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (12 bp):
AAAAAAAAGTAA
Found at i:9549925 original size:18 final size:18
Alignment explanation
Indices: 9549902--9549938 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9549892 TACTGACCTT
*
9549902 TGCATTACATTCATTGCA
1 TGCATTACAGTCATTGCA
*
9549920 TGCATTATAGTCATTGCA
1 TGCATTACAGTCATTGCA
9549938 T
1 T
9549939 TCACGCATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (18 bp):
TGCATTACAGTCATTGCA
Found at i:9550119 original size:20 final size:21
Alignment explanation
Indices: 9550086--9550125 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9550076 GTAGGAAAAC
9550086 TAAAGTTTAAAA-TTTGAAAT
1 TAAAGTTTAAAATTTTGAAAT
9550106 TAAA-TTTAAGAATTTTGAAA
1 TAAAGTTTAA-AATTTTGAAA
9550126 AATCTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (21 bp):
TAAAGTTTAAAATTTTGAAAT
Found at i:9550457 original size:38 final size:37
Alignment explanation
Indices: 9550413--9550603 Score: 117
Period size: 38 Copynumber: 5.1 Consensus size: 37
9550403 GCATTTATTT
9550413 AAAGTTAAAGCCTTAGTAGAGAAGTACTTTATTTGTTC
1 AAAGTTAAAGCCTTAGTAGAGAAGTACTTTATTT-TTC
* * *
9550451 AAAGTTAAAG-CATCG-ACGAAAAAGTACTTTATTTTTTC
1 AAAGTTAAAGCCTTAGTA-G-AGAAGTACTTTA-TTTTTC
* * *
9550489 AAAGTT--GGCGCTTCGATTA-AGGAGTACTTTATTTTTC
1 AAAGTTAAAGC-CTT--AGTAGAGAAGTACTTTATTTTTC
* ** *
9550526 AAAGTTAAAGGCTCGGTGGAGGAA-TACTTTATTTTTC
1 AAAGTTAAAGCCTTAGTAGA-GAAGTACTTTATTTTTC
* * * *
9550563 AAAAGTTAAAGTCTTGGTGGA-AGAGAACTTTATTTTTC
1 -AAAGTTAAAGCCTTAGTAGAGA-AGTACTTTATTTTTC
9550601 AAA
1 AAA
9550604 CTTGAAACCA
Statistics
Matches: 119, Mismatches: 19, Indels: 31
0.70 0.11 0.18
Matches are distributed among these distances:
36 4 0.03
37 34 0.29
38 76 0.64
39 4 0.03
41 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (37 bp):
AAAGTTAAAGCCTTAGTAGAGAAGTACTTTATTTTTC
Found at i:9550554 original size:37 final size:37
Alignment explanation
Indices: 9550508--9550603 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 37
9550498 GCTTCGATTA
*
9550508 AGGAGTACTTTATTTTTCAAAGTTAAAGGCTCGGTGG
1 AGGAATACTTTATTTTTCAAAGTTAAAGGCTCGGTGG
* *
9550545 AGGAATACTTTATTTTTCAAAAGTTAAAGTCTTGGTGG
1 AGGAATACTTTATTTTTC-AAAGTTAAAGGCTCGGTGG
*
9550583 AAGAGA-ACTTTATTTTTCAAA
1 AGGA-ATACTTTATTTTTCAAA
9550604 CTTGAAACCA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
37 20 0.38
38 32 0.60
39 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (37 bp):
AGGAATACTTTATTTTTCAAAGTTAAAGGCTCGGTGG
Found at i:9550984 original size:20 final size:20
Alignment explanation
Indices: 9550929--9550985 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
9550919 TGATTTAGAG
9550929 TTTG-ATTTTAA-TTTTTAA
1 TTTGAATTTTAATTTTTTAA
* * * *
9550947 TTTGGATTGTGATCTTTTAA
1 TTTGAATTTTAATTTTTTAA
*
9550967 TTTTAATTTTAATTTTTTA
1 TTTGAATTTTAATTTTTTA
9550986 GTTTAATGTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
18 4 0.14
19 5 0.17
20 20 0.69
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTGAATTTTAATTTTTTAA
Found at i:9552745 original size:39 final size:38
Alignment explanation
Indices: 9552662--9552755 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 38
9552652 TTTTTAAAAT
* * *
9552662 TTTAATTGCATAATTATATATTTAATTGCATGATTAAT
1 TTTAATTGCATGATTATATATTTAATTGCATGATGAAA
* *
9552700 TATTAATTACATGATTATATATTTAATTGCATTATAGAAA
1 T-TTAATTGCATGATTATATATTTAATTGCATGAT-GAAA
9552740 TTTAATTGCATGATTA
1 TTTAATTGCATGATTA
9552756 ATTATTACTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.02
39 44 0.92
40 3 0.06
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (38 bp):
TTTAATTGCATGATTATATATTTAATTGCATGATGAAA
Found at i:9552749 original size:58 final size:58
Alignment explanation
Indices: 9552662--9552792 Score: 208
Period size: 58 Copynumber: 2.2 Consensus size: 58
9552652 TTTTTAAAAT
* * *
9552662 TTTAATTGCATAATTATATATTTAATTGCATGATTAATTATTAATTACATGATTATATA
1 TTTAATTGCATTA-TAGAAATTTAATTGCATGATTAATTATTAATTACATGATTATATA
*
9552721 TTTAATTGCATTATAGAAATTTAATTGCATGATTAATTATTACTTACATGATTATATA
1 TTTAATTGCATTATAGAAATTTAATTGCATGATTAATTATTAATTACATGATTATATA
*
9552779 TTTAATTGTATTAT
1 TTTAATTGCATTAT
9552793 TTGCATGATT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 55 0.82
59 12 0.18
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (58 bp):
TTTAATTGCATTATAGAAATTTAATTGCATGATTAATTATTAATTACATGATTATATA
Found at i:9552780 original size:19 final size:20
Alignment explanation
Indices: 9552662--9552786 Score: 134
Period size: 19 Copynumber: 6.4 Consensus size: 20
9552652 TTTTTAAAAT
*
9552662 TTTAATTGCATAATTATATA
1 TTTAATTGCATGATTATATA
9552682 TTTAATTGCATGATTA-AT-
1 TTTAATTGCATGATTATATA
*
9552700 TATTAATTACATGATTATATA
1 T-TTAATTGCATGATTATATA
* * *
9552721 TTTAATTGCATTA-TAGAAA
1 TTTAATTGCATGATTATATA
9552740 TTTAATTGCATGATTA-AT-
1 TTTAATTGCATGATTATATA
* *
9552758 TATTACTTACATGATTATATA
1 T-TTAATTGCATGATTATATA
9552779 TTTAATTG
1 TTTAATTG
9552787 TATTATTTGC
Statistics
Matches: 86, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
18 2 0.02
19 46 0.53
20 36 0.42
21 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.49
Consensus pattern (20 bp):
TTTAATTGCATGATTATATA
Found at i:9552812 original size:13 final size:15
Alignment explanation
Indices: 9552790--9552821 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
9552780 TTAATTGTAT
9552790 TATTTGCATGATT-A
1 TATTTGCATGATTAA
9552804 TATTT-CATGATTAA
1 TATTTGCATGATTAA
9552818 TATT
1 TATT
9552822 ATATTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.53
Consensus pattern (15 bp):
TATTTGCATGATTAA
Found at i:9552878 original size:18 final size:18
Alignment explanation
Indices: 9552838--9552880 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
9552828 GTATGGTTAA
*
9552838 TATATTTGCATGGCAATT
1 TATATTAGCATGGCAATT
* * *
9552856 AATATTAGCATGGGATTT
1 TATATTAGCATGGCAATT
9552874 TATATTA
1 TATATTA
9552881 TTACATGATA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (18 bp):
TATATTAGCATGGCAATT
Found at i:9552893 original size:20 final size:20
Alignment explanation
Indices: 9552870--9552914 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
9552860 TTAGCATGGG
9552870 ATTTTATATTATTACATGAT
1 ATTTTATATTATTACATGAT
*
9552890 ATTTTATATTATTGCATGAT
1 ATTTTATATTATTACATGAT
9552910 ATTTT
1 ATTTT
9552915 TGCATGGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (20 bp):
ATTTTATATTATTACATGAT
Found at i:9552926 original size:14 final size:13
Alignment explanation
Indices: 9552895--9552928 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9552885 ATGATATTTT
*
9552895 ATATTATTGCATG
1 ATATTTTTGCATG
9552908 ATATTTTTGCATGG
1 ATATTTTTGCAT-G
9552922 ATATTTT
1 ATATTTT
9552929 GGTATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (13 bp):
ATATTTTTGCATG
Found at i:9552957 original size:32 final size:32
Alignment explanation
Indices: 9552908--9552971 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
9552898 TTATTGCATG
* * * *
9552908 ATATTTTTGCATGGATATTTTGGTATGATTTT
1 ATATTTTGGCATGGATATGTTGGCATCATTTT
9552940 ATATTTATGGCAT-GATATGTTGGCATCATTTT
1 ATATTT-TGGCATGGATATGTTGGCATCATTTT
9552972 TGGTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (32 bp):
ATATTTTGGCATGGATATGTTGGCATCATTTT
Found at i:9562016 original size:55 final size:55
Alignment explanation
Indices: 9561957--9562092 Score: 159
Period size: 55 Copynumber: 2.5 Consensus size: 55
9561947 TAGTATAAAC
* *
9561957 TTGTATTTTTTAATTTTTTTACTTATACCGACGGTTAGAGATTGTCAATATAGAA
1 TTGTATGTTTTAATTTTTTTACTTATACCGACGGTTAGAGATTCTCAATATAGAA
* * * ** * *
9562012 TTGTATGCTTTAATTTTCTTACCTT-TACCTATTGTTAGAGATTCTCAGTATAGAC
1 TTGTATGTTTTAATTTTTTTA-CTTATACCGACGGTTAGAGATTCTCAATATAGAA
*
9562067 TTATATGTTTTAATTTTTTTA-TTATA
1 TTGTATGTTTTAATTTTTTTACTTATA
9562093 TTTTACTAAC
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
53 2 0.03
54 2 0.03
55 60 0.90
56 3 0.04
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.51
Consensus pattern (55 bp):
TTGTATGTTTTAATTTTTTTACTTATACCGACGGTTAGAGATTCTCAATATAGAA
Found at i:9563028 original size:14 final size:16
Alignment explanation
Indices: 9563009--9563041 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
9562999 ATATACCAAC
9563009 AAAA-ATAATTTTATA
1 AAAATATAATTTTATA
9563024 AAAATATAATTTTATA
1 AAAATATAATTTTATA
9563040 AA
1 AA
9563042 CATCATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAATATAATTTTATA
Found at i:9568851 original size:13 final size:12
Alignment explanation
Indices: 9568820--9568851 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
9568810 AATATTTTTA
9568820 ATTTTTTAAAAT
1 ATTTTTTAAAAT
9568832 ATTTTTTAAAAT
1 ATTTTTTAAAAT
9568844 ATTATTTT
1 ATT-TTTT
9568852 TTATTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTTTTAAAAT
Found at i:9570195 original size:14 final size:14
Alignment explanation
Indices: 9570162--9570195 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9570152 CACCTTTAGC
* *
9570162 AAAAAGTCAAAGAA
1 AAAAAATCAAAAAA
9570176 AAAAAATCAAAAAA
1 AAAAAATCAAAAAA
9570190 AAAAAA
1 AAAAAA
9570196 AATTCATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (14 bp):
AAAAAATCAAAAAA
Found at i:9575136 original size:34 final size:35
Alignment explanation
Indices: 9575091--9575187 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 35
9575081 TATGCATTAG
*
9575091 TATTTTTAGAAAAGACATTTGTATTTCATGTA-CA-
1 TATTTTAAGAAAAGACATTTGTATTTCATG-AGCAC
*
9575125 TATTTTAAGAAAAGACATTT-TCATCTCATGAGCAC
1 TATTTTAAGAAAAGACATTTGT-ATTTCATGAGCAC
* * *
9575160 CA-TTTAAGAAAAGACGTTTGCATTTCAT
1 TATTTTAAGAAAAGACATTTGTATTTCAT
9575188 TTGCATCATA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
33 2 0.04
34 50 0.94
35 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.38
Consensus pattern (35 bp):
TATTTTAAGAAAAGACATTTGTATTTCATGAGCAC
Found at i:9575811 original size:96 final size:98
Alignment explanation
Indices: 9575572--9575833 Score: 287
Period size: 96 Copynumber: 2.7 Consensus size: 98
9575562 GAGATCATTT
* * ** * * * * *
9575572 TTTCCTTTAATGGCGATATCCAAAGCTACTTGCATCTTTTCGGTGGTGATATCCTAGTGTTAAGG
1 TTTCCTTTAGTGGTGATATCCAAAATTATTTGCATCTTTTTGATGGTGATATCCGAGTGTTAAAG
* *
9575637 CTTTATTTACAGTTTCTCAATGTTTGATATATGAG
66 --TTATTTACAGTTTCTCAATGTGTGATATATCAG
* * * * *
9575672 TTTTCTTTAGTGGTGATATCCGATATCATTTGCATCTTCTTGATGGTGATATCCGAGTGTTAAAG
1 TTTCCTTTAGTGGTGATATCCAAAATTATTTGCATCTTTTTGATGGTGATATCCGAGTGTTAAAG
* * *
9575737 TTATTTGCATTTTCTCGATG-GTGATAT-TCAG
66 TTATTTACAGTTTCTCAATGTGTGATATATCAG
* * *
9575768 TTTCCTTCAGTGGTGATATCCAAAATTATTTACATCTTTTTGATAGTGATATCCGAGT-TTAAAG
1 TTTCCTTTAGTGGTGATATCCAAAATTATTTGCATCTTTTTGATGGTGATATCCGAGTGTTAAAG
9575832 TT
66 TT
9575834 TGAATTTACA
Statistics
Matches: 135, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
95 8 0.06
96 53 0.39
97 6 0.04
98 17 0.13
100 51 0.38
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.44
Consensus pattern (98 bp):
TTTCCTTTAGTGGTGATATCCAAAATTATTTGCATCTTTTTGATGGTGATATCCGAGTGTTAAAG
TTATTTACAGTTTCTCAATGTGTGATATATCAG
Found at i:9576059 original size:99 final size:98
Alignment explanation
Indices: 9575956--9576136 Score: 258
Period size: 99 Copynumber: 1.8 Consensus size: 98
9575946 CTTCGGTAGC
* ** *
9575956 GATATCCGAGTGTTAAAGCTTTATTTGTATTTTCTCGATG-GTGATATTTGAGTTT-CTTTCGAT
1 GATATCCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGAG-GATATTCCAGTTTCCTTTAG-T
*
9576019 GGTAATATCCGAAGTCATTTGTATATTCTCAGTGGT
64 GGTAATATCC-AAGGCATTTGTATATTCTCAGTGGT
*
9576055 GATATTCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGAGGATATTCCAGTTTCCTTTAGTGG
1 GATATCCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGAGGATATTCCAGTTTCCTTTAGTGG
*
9576120 TGATATCCAAGGCATTT
66 TAATATCCAAGGCATTT
9576137 TCGAAATTAC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
98 8 0.11
99 59 0.81
100 6 0.08
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.43
Consensus pattern (98 bp):
GATATCCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGAGGATATTCCAGTTTCCTTTAGTGG
TAATATCCAAGGCATTTGTATATTCTCAGTGGT
Found at i:9576170 original size:99 final size:98
Alignment explanation
Indices: 9575956--9576171 Score: 237
Period size: 99 Copynumber: 2.2 Consensus size: 98
9575946 CTTCGGTAGC
* ** *
9575956 GATATCCGAGTGTTAAAGCTTTATTTGTATTTTCTCGATGGTGATATTTGAGTTTCTTTCGATGG
1 GATAT-CGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGGTGATATTCCAGTTTCTTTAGATGG
* * *
9576021 TAATATCCGAAGTCATTTGTATATTCTCAGTGGT
65 TAATATCCGAAGGCATTTGTAAATTCTCAGTCGT
9576055 GATATTCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGAG-GATATTCCAGTTTCCTTTAG-T
1 GATA-TCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATG-GTGATATTCCAGTTT-CTTTAGAT
*
9576118 GGTGATATCC-AAGGCATTT-TCGAAATTACTC-GATCGT
63 GGTAATATCCGAAGGCATTTGT--AAATT-CTCAG-TCGT
9576155 GATATCAGAGT-TTAAAG
1 GATATC-GAGTGTTAAAG
9576172 TTTGAATTTA
Statistics
Matches: 101, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
97 1 0.01
98 8 0.08
99 71 0.70
100 21 0.21
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (98 bp):
GATATCGAGTGTTAAAGCTTTATTTGCATTTTCTCGATGGTGATATTCCAGTTTCTTTAGATGGT
AATATCCGAAGGCATTTGTAAATTCTCAGTCGT
Found at i:9576538 original size:48 final size:48
Alignment explanation
Indices: 9576466--9576743 Score: 334
Period size: 48 Copynumber: 5.7 Consensus size: 48
9576456 TTCAAAGTTA
*
9576466 TTTTTCAAGATGA-AATTTTAAAGTTGTTGAACCTCTACTTAGAGAGC
1 TTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTTAGAGAGC
* * *
9576513 TTTTCCAAGATGAGAATTTTGAAGTTGTTGAGCCTCT-GTTAAGAAGAGC
1 TTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTT-AG-AGAGC
*
9576562 TTTTTCAAGA--AAAATTTTTAAAGTTGTTGAGCCTCTA-TTGAGAGAAGC
1 TTTTTCAAGATGAGAA-TTTTAAAGTTGTTGAGCCTCTACTT-AGAG-AGC
*
9576610 TTTTTCAAGAT-AGATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGC
1 TTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTTAGA-GAGC
* * *
9576658 TTTTTCAAGATGATGAATTTTAAAGTTGTTGAGCTTTTGCTTAGAGCAGC
1 TTTTTCAAGATGA-GAATTTTAAAGTTGTTGAGCCTCTACTTAGAG-AGC
**
9576708 TTTCCCAAGATGATGAATTTTAAAGTTGTTGAGCCT
1 TTTTTCAAGATGA-GAATTTTAAAGTTGTTGAGCCT
9576744 TTGATTAGAA
Statistics
Matches: 202, Mismatches: 17, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
47 19 0.09
48 99 0.49
49 21 0.10
50 63 0.31
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (48 bp):
TTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTCTACTTAGAGAGC
Found at i:9577838 original size:13 final size:13
Alignment explanation
Indices: 9577793--9577839 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
9577783 TTTAAAGATT
*
9577793 TTTTTATATATTAT
1 TTTTTAT-TATTAA
9577807 TTTTTATT-TTAAA
1 TTTTTATTATT-AA
9577820 TTTTTATTATTAA
1 TTTTTATTATTAA
*
9577833 TATTTAT
1 TTTTTAT
9577840 GCATGTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 2 0.07
13 18 0.62
14 9 0.31
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTATTATTAA
Found at i:9578860 original size:10 final size:10
Alignment explanation
Indices: 9578845--9578871 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9578835 TAAAATTATC
9578845 ATTTTAATAA
1 ATTTTAATAA
9578855 ATTTTAATAA
1 ATTTTAATAA
9578865 ATTTTAA
1 ATTTTAA
9578872 GATTTCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTTTAATAA
Found at i:9581311 original size:63 final size:63
Alignment explanation
Indices: 9581065--9581336 Score: 209
Period size: 63 Copynumber: 4.3 Consensus size: 63
9581055 GTGTTTATGG
* ** * ** * **
9581065 CAAAAAAAAGCCTTGAATAATCCTCAAAAATTTTTTATAAAAAATTATTGAAGGCATTTTTTGT
1 CAAAAAATA-CCTTGAATAATCCTCTTATATTTTTTATAATGAATTATTCAAGGCATTTTTTAC
* * * * * *
9581129 AAAAAAATACCTTCAATAATCCCCTT-TATTTTTTATAA-GAAGATTAATCAAGGC-GTTTTAAC
1 CAAAAAATACCTTGAATAATCCTCTTATATTTTTTATAATG-A-ATTATTCAAGGCATTTTTTA-
9581191 C
63 C
**** * *
9581192 CAAAAAATACCTTGAATAATCC-CTTATAAAAAATTA-AAT-AAGGTTATTGAATGCATTTTTTA
1 CAAAAAATACCTTGAATAATCCTCTTAT-ATTTTTTATAATGAA--TTATTCAAGGCATTTTTTA
9581254 C
63 C
* *
9581255 C-AAAAATACCTTGAATAATCCTCTTATATTTTTTATGAATGAATTATTCAAAGCA-TTTTTAG
1 CAAAAAATACCTTGAATAATCCTCTTATATTTTTTAT-AATGAATTATTCAAGGCATTTTTTAC
9581317 CAAAAAATACCTTGAATAAT
1 CAAAAAATACCTTGAATAAT
9581337 TCCCTCCAAT
Statistics
Matches: 162, Mismatches: 32, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
61 1 0.01
62 51 0.31
63 89 0.55
64 19 0.12
65 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (63 bp):
CAAAAAATACCTTGAATAATCCTCTTATATTTTTTATAATGAATTATTCAAGGCATTTTTTAC
Found at i:9581354 original size:125 final size:126
Alignment explanation
Indices: 9581109--9581341 Score: 296
Period size: 125 Copynumber: 1.8 Consensus size: 126
9581099 TTATAAAAAA
9581109 TTATTGAAGGCATTTTTTGTAAAAAAATACCTTCAATAATCCCCTTTATTTTTTATAAGAAGATT
1 TTATTGAAGGCATTTTTTGTAAAAAAATACCTTCAATAATCCCCTTTATTTTTTATAAGAAGATT
* * *
9581174 AATCAAGGCGTTTTAACCCAAAAAATACCTTGAATAATCCCTTATAAAAAATTAAATAAGG
66 AATCAAAGCATTTTAACCCAAAAAATACCTTGAATAATCCCTTACAAAAAATTAAATAAGG
* * * *
9581235 TTATTGAATGCA-TTTTT-TACCAAAAATACCTTGAATAATCCTCTTATATTTTTTAT--GAATG
1 TTATTGAAGGCATTTTTTGTA-AAAAAATACCTTCAATAATCCCCTT-TATTTTTTATAAGAA-G
* * *
9581296 AATTATTCAAAGCATTTTTA-GCAAAAAATACCTTGAATAATTCCCT
63 -ATTAATCAAAGCATTTTAACCCAAAAAATACCTTGAATAA-TCCCT
9581342 CCAATTTTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
124 5 0.05
125 47 0.51
126 41 0.44
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.38
Consensus pattern (126 bp):
TTATTGAAGGCATTTTTTGTAAAAAAATACCTTCAATAATCCCCTTTATTTTTTATAAGAAGATT
AATCAAAGCATTTTAACCCAAAAAATACCTTGAATAATCCCTTACAAAAAATTAAATAAGG
Found at i:9581384 original size:63 final size:63
Alignment explanation
Indices: 9581064--9581367 Score: 169
Period size: 63 Copynumber: 4.8 Consensus size: 63
9581054 GGTGTTTATG
* ** * * * * *
9581064 GCAAAAAAAAGCCTTGAATAATCCTCAAAAATTTTTTATAAA-AAATTATTGAAGGCATTTTTT
1 GCAAAAAATA-CCTTGAATAATCCTCTCATATTTTTTATAAAGGAATTATTCAAAGCATTTTTA
* * * * * * * * *
9581127 GTAAAAAAATACCTTCAATAATCCCCT-TTATTTTTTAT-AAGAAGATTAATCAAGGCGTTTTAA
1 G-CAAAAAATACCTTGAATAATCCTCTCATATTTTTTATAAAGGA-ATTATTCAAAGCATTTTTA
* * **** * * *
9581190 CCCAAAAAATACCTTGAATAATCC-CTTATAAAAAATTAAATAAGG--TTATTGAATGCATTTTT
1 -GCAAAAAATACCTTGAATAATCCTCTCAT-ATTTTTTATA-AAGGAATTATTCAAAGCA-TTTT
9581252 TA
62 TA
* * * *
9581254 -CCAAAAATACCTTGAATAATCCTCTTATATTTTTTATGAATGAATTATTCAAAGCATTTTTA
1 GCAAAAAATACCTTGAATAATCCTCTCATATTTTTTATAAAGGAATTATTCAAAGCATTTTTA
* *
9581316 GCAAAAAATACCTTGAATAATTCC-CTCCA-ATTTTTTA-AAAGGGATTCTTCAA
1 GCAAAAAATACCTTGAATAA-TCCTCT-CATATTTTTTATAAAGGAATTATTCAA
9581368 GGCGTTTTCT
Statistics
Matches: 183, Mismatches: 43, Indels: 31
0.71 0.17 0.12
Matches are distributed among these distances:
61 5 0.03
62 55 0.30
63 100 0.55
64 20 0.11
66 3 0.02
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (63 bp):
GCAAAAAATACCTTGAATAATCCTCTCATATTTTTTATAAAGGAATTATTCAAAGCATTTTTA
Found at i:9586005 original size:62 final size:62
Alignment explanation
Indices: 9585936--9586069 Score: 166
Period size: 62 Copynumber: 2.2 Consensus size: 62
9585926 CAGAAACATT
* *
9585936 TTGAATAATTCTCT-TAAATTTTTATGAGTA-GATTATTGAAAG-TGTTTTTGACCAAAAATGCC
1 TTGAATAATCCCCTCTAAATTTTTA-GA-TAGGATTATTG-AAGTTGTTTTTGACCAAAAATGCC
* * *
9585998 TTGAATAATCCCCTCTAATTTTTTAGATAGGATTATTGAAGTTGTTTTTGGCTAAAAATGCC
1 TTGAATAATCCCCTCTAAATTTTTAGATAGGATTATTGAAGTTGTTTTTGACCAAAAATGCC
*
9586060 TTCAATAATC
1 TTGAATAATC
9586070 TTTTTCCATT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
61 5 0.08
62 49 0.78
63 9 0.14
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (62 bp):
TTGAATAATCCCCTCTAAATTTTTAGATAGGATTATTGAAGTTGTTTTTGACCAAAAATGCC
Found at i:9586279 original size:63 final size:63
Alignment explanation
Indices: 9586110--9586283 Score: 149
Period size: 63 Copynumber: 2.8 Consensus size: 63
9586100 TTTTTGTGAG
* * * * * * *
9586110 AAAACACCTTGAATAA-CCCTTTAGAAAAAATTGAATGGGGTTAGTCAAGGCATTTATGGCCA
1 AAAATACCTTGAATAATCCCATTACAAAATATTGAATGGGGTTATTGAAGGCATTTATAGCCA
* ** * * * * **
9586172 AAAATACCTTAAATAATCCCATT-CAATTTTTATG-ATCGGATTATTGAAGGCATTTTTAGTTA
1 AAAATACCTTGAATAATCCCATTACAAAATAT-TGAATGGGGTTATTGAAGGCATTTATAGCCA
*
9586234 GAAAATGCCTTGAATAATCCC-TTACAAAATATTGAATGGGGTTATTGAAG
1 -AAAATACCTTGAATAATCCCATTACAAAATATTGAATGGGGTTATTGAAG
9586284 CGTTTCTGAC
Statistics
Matches: 84, Mismatches: 23, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
62 41 0.49
63 43 0.51
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (63 bp):
AAAATACCTTGAATAATCCCATTACAAAATATTGAATGGGGTTATTGAAGGCATTTATAGCCA
Found at i:9589113 original size:16 final size:17
Alignment explanation
Indices: 9589086--9589122 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
9589076 CGTGTTCATC
9589086 TTTTTTATTTGATTATA
1 TTTTTTATTTGATTATA
*
9589103 TTTTTTA-TTGATTTTA
1 TTTTTTATTTGATTATA
9589119 TTTT
1 TTTT
9589123 AATTAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (17 bp):
TTTTTTATTTGATTATA
Found at i:9589811 original size:19 final size:19
Alignment explanation
Indices: 9589787--9589824 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9589777 TGTTGTCATA
9589787 TAAATCATGTTTTCACAAT
1 TAAATCATGTTTTCACAAT
9589806 TAAATCATGTTTTCACAAT
1 TAAATCATGTTTTCACAAT
9589825 GATAAAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
TAAATCATGTTTTCACAAT
Found at i:9592824 original size:58 final size:58
Alignment explanation
Indices: 9592761--9592984 Score: 218
Period size: 58 Copynumber: 3.7 Consensus size: 58
9592751 GAATTGTAAA
* * *
9592761 AAAAAAATATTTTTCAGGAAAAGTTGAAAGTATAAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAATTTTC
**
9592819 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTT-TTCAAAATTAAAGTTTAAAAAA
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAAATTAAA-TTT------
*
9592883 AAAC
57 --TC
* * ** *
9592887 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAATTTTC
*
9592945 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTT
9592985 CCCTGCACAA
Statistics
Matches: 137, Mismatches: 16, Indels: 26
0.77 0.09 0.15
Matches are distributed among these distances:
58 47 0.34
59 38 0.28
60 3 0.02
66 2 0.01
67 38 0.28
68 9 0.07
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAATTTTC
Found at i:9597297 original size:9 final size:9
Alignment explanation
Indices: 9597283--9597307 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9597273 AAGATGATGA
9597283 AAAAAAAAG
1 AAAAAAAAG
9597292 AAAAAAAAG
1 AAAAAAAAG
9597301 AAAAAAA
1 AAAAAAA
9597308 GTAGGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:9597316 original size:31 final size:31
Alignment explanation
Indices: 9597262--9597345 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 31
9597252 AAAAATGAGC
* *
9597262 AAAAAGAAAAGAAGATGATGAAAAAAAAAGAAA
1 AAAAAGAAAAAAAG-T-AGGAAAAAAAAAGAAA
**
9597295 AAAAAGAAAAAAAGTAGGAAAAAATGAGAAA
1 AAAAAGAAAAAAAGTAGGAAAAAAAAAGAAA
9597326 ATGAAAA-AAAAAAAG-AGGAA
1 A--AAAAGAAAAAAAGTAGGAA
9597346 TTCAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 19 0.42
32 9 0.20
33 17 0.38
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (31 bp):
AAAAAGAAAAAAAGTAGGAAAAAAAAAGAAA
Found at i:9598455 original size:23 final size:23
Alignment explanation
Indices: 9598429--9598487 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
9598419 GAATATTTTG
*
9598429 ATGAGAATTTTTTGAGACTTC-AA
1 ATGAGAATTCTTTGAG-CTTCAAA
*
9598452 ATGAGAA-TCTTTGAGTTTCAAA
1 ATGAGAATTCTTTGAGCTTCAAA
9598474 ATGAGAA-TCTTTGA
1 ATGAGAATTCTTTGA
9598488 AGGGTGAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 23 0.70
23 7 0.21
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (23 bp):
ATGAGAATTCTTTGAGCTTCAAA
Found at i:9599102 original size:41 final size:39
Alignment explanation
Indices: 9599045--9599255 Score: 269
Period size: 41 Copynumber: 5.2 Consensus size: 39
9599035 ATGATTGTCA
*
9599045 AGGAGCAATTTACTTTCCAAAGTTCCATTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAG-T-CGTTGCCTCTGTTTAG
*
9599086 AGGAGCAATTTACTTTCCAAAGTCGTGGCGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGT--TGCCTCTGTTTAG
* *
9599127 AGGAGCAATTTACTTTTCAAAGTCGTGTTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAGTC--GTTGCCTCTGTTTAG
* * *
9599168 AGGAGCAATTTATTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTC--GTTGCCTCTGTTTAG
9599209 AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTT--GCCTCTGTTTAG
9599250 AGGAGC
1 AGGAGC
9599256 TTTGTTTATG
Statistics
Matches: 152, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
39 4 0.03
40 1 0.01
41 145 0.95
43 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (39 bp):
AGGAGCAATTTACTTTCCAAAGTCGTTGCCTCTGTTTAG
Found at i:9599189 original size:82 final size:81
Alignment explanation
Indices: 9599045--9599255 Score: 314
Period size: 82 Copynumber: 2.6 Consensus size: 81
9599035 ATGATTGTCA
**
9599045 AGGAGCAATTTACTTTCCAAAGTTCCATTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
1 AGGAGCAATTTACTTTCCAAAG-TCGTTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
*
9599110 GTGGCGCCTCTGTTTAG
65 ATGGCGCCTCTGTTTAG
* * * *
9599127 AGGAGCAATTTACTTTTCAAAGTCGTGTTGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAGTC
1 AGGAGCAATTTACTTTCCAAAGTCGT-TTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
*
9599192 ATGGTGCCTCTGTTTAG
65 ATGGCGCCTCTGTTTAG
*
9599209 AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 AGGAGCAATTTACTTTCCAAAGTCGTT-TGCCTCTGTTTAGAGGAGC
9599256 TTTGTTTATG
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
81 3 0.03
82 113 0.97
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (81 bp):
AGGAGCAATTTACTTTCCAAAGTCGTTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCA
TGGCGCCTCTGTTTAG
Found at i:9599392 original size:134 final size:128
Alignment explanation
Indices: 9599245--9599485 Score: 356
Period size: 134 Copynumber: 1.8 Consensus size: 128
9599235 TGAGCCTCTG
*
9599245 TTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTACTTAGAAGAGCTTTGACCAA
1 TTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAAGAGCTTTGACCAA
**
9599310 TTTTTTTTCAAAAAAAAAAAAAGCAAAAGAAAATGGACAAAAAAAAAACAAAAAAAAAAGTTGCT
66 ---AATTT-AAAAAAAAAAAAAG-AAAA-AAAATGGACAAAAAAAAAACAAAAAAAAAAGTTGCT
9599375 TCTA
125 TCTA
* * *
9599379 TTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTGCTTAGAGGAGCTTTGATCAA
1 TTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAAGAGCTTTGACCAA
* *
9599444 AATTTAAAAAAAAAAAAAGGAAAAAAATGGGCAAAAAAAAAA
66 AATTTAAAAAAAAAAAAAGAAAAAAAATGGACAAAAAAAAAA
9599486 TCAGTTGAGT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
128 18 0.18
129 3 0.03
130 14 0.14
131 3 0.03
134 61 0.62
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.28
Consensus pattern (128 bp):
TTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAAGAGCTTTGACCAA
AATTTAAAAAAAAAAAAAGAAAAAAAATGGACAAAAAAAAAACAAAAAAAAAAGTTGCTTCTA
Found at i:9599700 original size:24 final size:24
Alignment explanation
Indices: 9599673--9599724 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9599663 ATATTTATCA
9599673 ATTTTATTTTTATTT-TTATGATTT
1 ATTTTATTTTTATTTCTTATGA-TT
* * *
9599697 ATTTTCTTTTTCTTTCTTTTGATT
1 ATTTTATTTTTATTTCTTATGATT
9599721 ATTT
1 ATTT
9599725 GATAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (24 bp):
ATTTTATTTTTATTTCTTATGATT
Found at i:9602265 original size:59 final size:59
Alignment explanation
Indices: 9602202--9602549 Score: 334
Period size: 58 Copynumber: 5.7 Consensus size: 59
9602192 AGGAACTGTA
*
9602202 AAAAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
**
9602261 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTAGT-AATTTTTC-TAAAAATTAAAGTTTCAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTA-TCAATTTTTCTTAAAAA-TAAA-TTT-----
*
9602324 AAAAAAC
58 -----TC
* *
9602331 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTTC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA-ATTTTC
* * * *
9602391 --AAAAAATATTTTTGGGGAAAAATTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAA-TAAATTTTC
* ** * *
9602449 AAAAAAAGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
*
9602508 -AAAAGAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTC
1 AAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTC
9602550 CTGCACAAGA
Statistics
Matches: 241, Mismatches: 24, Indels: 49
0.77 0.08 0.16
Matches are distributed among these distances:
57 3 0.01
58 89 0.37
59 52 0.22
60 45 0.19
61 1 0.00
69 2 0.01
70 44 0.18
71 5 0.02
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.35
Consensus pattern (59 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
Found at i:9602340 original size:129 final size:129
Alignment explanation
Indices: 9602202--9602455 Score: 374
Period size: 129 Copynumber: 2.0 Consensus size: 129
9602192 AGGAACTGTA
9602202 AAAAAAAATATTTTT-GAGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAA-ATTTTCAAAA
1 AAAAAAAATATTTTTAG-GGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAGATTTTCAAAA
*
9602265 AAAAGGTTTTTGAGGAAAAGTTGAAAGTAGT-AATTTTTCT-AAAAATTAAAG-TTTCAAAAAAA
65 AAAA--TTTTTGAGGAAAAATTGAAAGTA-TCAATTTTTCTAAAAAATT-AAGTTTTCAAAAAAA
9602327 AAAC
126 AAAC
* * *
9602331 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTTCAAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAGATTTTCAAAAA
* *
9602396 ATATTTTTGGGGAAAAATTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTTCAAAAAAA
66 AAATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTTCAAAAAAA
9602456 GAATTTTTGA
Statistics
Matches: 114, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
127 1 0.01
128 33 0.29
129 67 0.59
130 13 0.11
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (129 bp):
AAAAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAGATTTTCAAAAA
AAATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTTCAAAAAAAAAAC
Found at i:9602462 original size:118 final size:118
Alignment explanation
Indices: 9602330--9602549 Score: 333
Period size: 118 Copynumber: 1.9 Consensus size: 118
9602320 AAAAAAAAAA
* *
9602330 CAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGTTTTTCAA
1 CAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAG--TTTCAA
9602393 AA-AATATTTTTGGGGAAAAA-TTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTT
63 AAGAATATTTTT-GGGAAAAAGTTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTT
*
9602448 CAAAAAAAGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCAAAA
1 CAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAGTTTCAAAA
9602512 GAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC
65 GAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC
9602550 CTGCACAAGA
Statistics
Matches: 94, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
117 16 0.17
118 73 0.78
119 5 0.05
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (118 bp):
CAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAGTTTCAAAAG
AATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTAAAAAATTAAGTTTT
Found at i:9604023 original size:19 final size:21
Alignment explanation
Indices: 9603986--9604036 Score: 88
Period size: 19 Copynumber: 2.5 Consensus size: 21
9603976 AAAGTCAATT
9603986 CATAACATCTATAAAAATATC
1 CATAACATCTATAAAAATATC
9604007 CATAACATC-AT-AAAATATC
1 CATAACATCTATAAAAATATC
9604026 CATAACATCTA
1 CATAACATCTA
9604037 CATCCTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 17 0.59
20 3 0.10
21 9 0.31
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (21 bp):
CATAACATCTATAAAAATATC
Found at i:9604225 original size:18 final size:18
Alignment explanation
Indices: 9604202--9604245 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
9604192 ATTAAAAGTC
* * *
9604202 AATTTTAAGTAATTATGG
1 AATTTTAAGCAATCATAG
9604220 AATTTTAAGCAATCATAG
1 AATTTTAAGCAATCATAG
9604238 AATTTTAA
1 AATTTTAA
9604246 ATTGAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (18 bp):
AATTTTAAGCAATCATAG
Found at i:9606165 original size:118 final size:118
Alignment explanation
Indices: 9606016--9606253 Score: 404
Period size: 118 Copynumber: 2.0 Consensus size: 118
9606006 CTTGGACTCA
*
9606016 ATACAATTTTGATAATATTGGTTTGGAGAAATAGATTAACTAGAAAAAGATGTTCTAGAGAATAA
1 ATACAATTTTGATAATATTGGTTTGGAGAAATAGATTAACTAGAAAAAAATGTTCTAGAGAATAA
* *
9606081 GGTTTCCAACATTGAATTTGATTAATTTACAAATTTTAATGTTTGAAATTTAT
66 GGTTTCCAACATTGAATTTGATTAATTGACAAATTTTAATATTTGAAATTTAT
* ** * *
9606134 ATACAATTTTGGTTCTATTGGTTTGGAGAAATGGATTAACTAGAAAAAAATGTTTTAGAGAATAA
1 ATACAATTTTGATAATATTGGTTTGGAGAAATAGATTAACTAGAAAAAAATGTTCTAGAGAATAA
9606199 GGTTTCCAACATTGAATTTGATTAATTGACAAATTTTAATATTTGAAATTTAT
66 GGTTTCCAACATTGAATTTGATTAATTGACAAATTTTAATATTTGAAATTTAT
9606252 AT
1 AT
9606254 GGATGGAAAA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 112 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (118 bp):
ATACAATTTTGATAATATTGGTTTGGAGAAATAGATTAACTAGAAAAAAATGTTCTAGAGAATAA
GGTTTCCAACATTGAATTTGATTAATTGACAAATTTTAATATTTGAAATTTAT
Found at i:9609788 original size:5 final size:5
Alignment explanation
Indices: 9609774--9609808 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
9609764 AAGCTATTCC
*
9609774 CTTTT CTTTT TTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
9609809 TTCACCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
CTTTT
Found at i:9611925 original size:21 final size:21
Alignment explanation
Indices: 9611876--9611931 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
9611866 AAAAAAGCAC
*
9611876 AAAAAAAAATG-AAGGAAAATG
1 AAAAAAAAA-GAAAAGAAAATG
*
9611897 AAATAAAAAGAAAAGAATAAT-
1 AAAAAAAAAGAAAAGAA-AATG
*
9611918 AAAAAAAAGGAAAA
1 AAAAAAAAAGAAAA
9611932 AAGAAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (21 bp):
AAAAAAAAAGAAAAGAAAATG
Found at i:9613343 original size:16 final size:16
Alignment explanation
Indices: 9613322--9613355 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9613312 TTGTGATCTG
9613322 CATTGACATTTGCATT
1 CATTGACATTTGCATT
* *
9613338 CATTGATATTTGTATT
1 CATTGACATTTGCATT
9613354 CA
1 CA
9613356 CATTATTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (16 bp):
CATTGACATTTGCATT
Found at i:9614035 original size:22 final size:22
Alignment explanation
Indices: 9614002--9614044 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9613992 ACTTTGAGCA
*
9614002 TAATCTTTAAGACCTCTAGGCC
1 TAATCTTTAAGACCTCCAGGCC
9614024 TAAT-TTTCAAGACCTCCAGGC
1 TAATCTTT-AAGACCTCCAGGC
9614045 AAACTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (22 bp):
TAATCTTTAAGACCTCCAGGCC
Found at i:9614052 original size:22 final size:22
Alignment explanation
Indices: 9614010--9614052 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9614000 CATAATCTTT
* *
9614010 AAGACCTCTAGGCCTAATTTTC
1 AAGACCTCCAGGCCAAATTTTC
9614032 AAGACCTCCAGG-CAAACTTTT
1 AAGACCTCCAGGCCAAA-TTTT
9614053 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (22 bp):
AAGACCTCCAGGCCAAATTTTC
Found at i:9614164 original size:22 final size:22
Alignment explanation
Indices: 9614111--9614169 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
9614101 TTAAGACTTG
9614111 TAAGACCTCTGGGCATAATCTT
1 TAAGACCTCTGGGCATAATCTT
* * *
9614133 TAAAAACTCTGGGCCTAA-CTT
1 TAAGACCTCTGGGCATAATCTT
*
9614154 TCAAGACCTCTTGGCA
1 T-AAGACCTCTGGGCA
9614170 AACCTTTTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (22 bp):
TAAGACCTCTGGGCATAATCTT
Found at i:9614230 original size:126 final size:124
Alignment explanation
Indices: 9613926--9614769 Score: 932
Period size: 125 Copynumber: 6.8 Consensus size: 124
9613916 TACAAAAAAA
* * *
9613926 TTTTAAAATTTTTAAAG-TTCATGGCCTTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTATA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTGTA
* * **
9613990 AGA-CTTTGAGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCTCCAGGCAAAC
66 AGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCT-TTGGCAAAC
* *
9614049 TTTTTAAA-TTTTAAAGTTTCATGGCCTTTGATTGGAGGAGCATTCAAAGATTTTAAGACTTGTA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTGTA
* * * *
9614113 AGACCTCTGGGCATAATCTTTAAAAACTCTGGGCCTAACTTTCAAGACCTCTTGGCAAACC
66 AGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCT-TTGGCAAA-C
* * * * * *
9614174 TTTTTAAATTTTTAAAGTTTTATGGCCCTTAATCGGAGGAGCATTCAAAAATTTTAATATTTGCA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTGTA
* * * * *
9614239 AGACCTCTGGGTATAATCTTTAAGACCTCTAGGCTTAATTTTTAAGA-CTTTCGAGTGAATCC
66 AGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCTTT-G-G-CAA-AC
* * * *
9614301 TTTTTAAATTTTTAAAGTTTTATGGCCCTTGATTAGAGAAGCATTCATAA-ATTTTAATATTTGT
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCA-AAGATTTTAAGATTTGT
* * * * * * *
9614365 AAGACCTCTGGGTATAATTTTTAAGACCTCCAGGCTTAATTTTCAAGACCTTCGAGTGAATC
65 AAGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCTTTG-G-CAAAC
* * * *
9614427 TTTTTAAATTTTTAAAGTTTCATGG-CCTCTGATTAGAGGAACATTCAAAAAGTTTAAGATTTGT
1 TTTTTAAATTTTTAAAGTTTCATGGCCCT-TGATTGGAGGAGCATTCAAAGATTTTAAGATTTGT
* * * * * *
9614491 AAAACCTCTGAGCATAATTTTTAAGACCT-TCGGGCCTAATTTTCAAAACCTTTAGGCGAAC
65 AAGACCTCTGGGCATAATCTTTAAGACCTCT-AGGCCTAATTTTCAAGACCTTT-GGCAAAC
* * *
9614552 TCTTTAAATTTTTAAAGTTTCATGG-CCTCTGATTAGAGTAGCATTCAAAGATTTTAAGATTTGT
1 TTTTTAAATTTTTAAAGTTTCATGGCCCT-TGATTGGAGGAGCATTCAAAGATTTTAAGATTTGT
* * * * * ** *
9614616 AAAACCTCTAGGCATAATCTTTAAGATCTCAAGGCTTAATTTTCAAGACCTCAAGGTAAAC
65 AAGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCT-TTGGCAAAC
* *
9614677 TTTTTAAATTTTTAAAGTTTCATGGCCTTTGATTGGATGAGCATTCAAAGATTTTAAGATTTGTA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTGTA
* * *
9614742 AGACATCTGGACCTAAT-TTTCAAGACCT
66 AGACCTCTGGGCATAATCTTT-AAGACCT
9614770 TTGGACAAAC
Statistics
Matches: 621, Mismatches: 82, Indels: 34
0.84 0.11 0.05
Matches are distributed among these distances:
122 8 0.01
123 55 0.09
124 52 0.08
125 200 0.32
126 189 0.30
127 112 0.18
128 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (124 bp):
TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTGTA
AGACCTCTGGGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACCTTTGGCAAAC
Found at i:9614263 original size:22 final size:22
Alignment explanation
Indices: 9614238--9614286 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
9614228 TAATATTTGC
*
9614238 AAGACCTCT-GGGTATAATCTTT
1 AAGACCTCTAGGCT-TAATCTTT
*
9614260 AAGACCTCTAGGCTTAATTTTT
1 AAGACCTCTAGGCTTAATCTTT
9614282 AAGAC
1 AAGAC
9614287 TTTCGAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (22 bp):
AAGACCTCTAGGCTTAATCTTT
Found at i:9614370 original size:253 final size:249
Alignment explanation
Indices: 9613926--9615015 Score: 1032
Period size: 253 Copynumber: 4.4 Consensus size: 249
9613916 TACAAAAAAA
* * * *
9613926 TTTTAAAATTTTTAAAG-TTCATGGCCTTTGATTGGAGGAGCATTCAAAGATTTTAAGATTTATA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAAATTTTAAGATTTGTA
* * *
9613990 AGA-CTTTGAGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGAC-CTCCAGGCAAACTTTT
66 AGACCTCTGAGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACTTTCGAGG--AACTTTT
* * * *
9614053 TAAA-TTTTAAAGTTTCATGGCCTTTGATTGGAGGAGCATTCAAAGATTTTAAGACTTGTAAGAC
129 TAAATTTTTAAAGTTTCATGGCCCTTGATTAGAGAAGCATTCAAAGATTTTAAGATTTGTAAGAC
* ** * * * *
9614117 CTCTGGGCATAATCTTTAAAAACTCTGGGCCTAACTTTCAAGACCTCTTGGCAAACC
194 CTCTGGGCATAATCTTTAAGAACTCAAGGCTTAATTTTCAAGACCTCTAGGTAAA-C
* * * * *
9614174 TTTTTAAATTTTTAAAGTTTTATGGCCCTTAATCGGAGGAGCATTCAAAAATTTTAATATTTGCA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAAATTTTAAGATTTGTA
* * * *
9614239 AGACCTCTGGGTATAATCTTTAAGACCTCTAGGCTTAATTTTTAAGACTTTCGAGTGAATCCTTT
66 AGACCTCTGAGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACTTTCGAG-GAA--CTTT
* *
9614304 TTAAATTTTTAAAGTTTTATGGCCCTTGATTAGAGAAGCATTCATAA-ATTTTAATATTTGTAAG
128 TTAAATTTTTAAAGTTTCATGGCCCTTGATTAGAGAAGCATTCA-AAGATTTTAAGATTTGTAAG
* * * * * *
9614368 ACCTCTGGGTATAATTTTTAAGACCTCCAGGCTTAATTTTCAAGACCT-TCGAGTGAATC
192 ACCTCTGGGCATAATCTTTAAGAACTCAAGGCTTAATTTTCAAGACCTCTAG-GT-AAAC
* * *
9614427 TTTTTAAATTTTTAAAGTTTCATGG-CCTCTGATTAGAGGAACATTCAAAAAGTTTAAGATTTGT
1 TTTTTAAATTTTTAAAGTTTCATGGCCCT-TGATTGGAGGAGCATTCAAAAATTTTAAGATTTGT
* * * * * *
9614491 AAAACCTCTGAGCATAATTTTTAAGACCT-TCGGGCCTAATTTTCAAAACCTTTAG-GCGAACTC
65 AAGACCTCTGAGCATAATCTTTAAGACCTCT-AGGCCTAATTTTCAAGA-CTTTCGAG-GAACTT
*
9614554 TTTAAATTTTTAAAGTTTCATGG-CCTCTGATTAGAGTAGCATTCAAAGATTTTAAGATTTGTAA
127 TTTAAATTTTTAAAGTTTCATGGCCCT-TGATTAGAGAAGCATTCAAAGATTTTAAGATTTGTAA
* * * *
9614618 AACCTCTAGGCATAATCTTTAAGATCTCAAGGCTTAATTTTCAAGACCTCAAGGTAAAC
191 GACCTCTGGGCATAATCTTTAAGAACTCAAGGCTTAATTTTCAAGACCTCTAGGTAAAC
* * *
9614677 TTTTTAAATTTTTAAAGTTTCATGGCCTTTGATTGGATGAGCATTCAAAGATTTTAAGATTTGTA
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAAATTTTAAGATTTGTA
* * *
9614742 AGACATCTG-GACCTAAT-TTTCAAGACCT-TTGG----A----CAA-AC---C-----AC-TTT
66 AGACCTCTGAG-CATAATCTTT-AAGACCTCTAGGCCTAATTTTCAAGACTTTCGAGGAACTTTT
* * * *
9614786 TAAATTTTTAAAATTTCATGACCTC-TGATTGGA-AGAGCATTTAAAGATTTTAAGATTTGTAAG
129 TAAATTTTTAAAGTTTCATGGCC-CTTGATTAGAGA-AGCATTCAAAGATTTTAAGATTTGTAAG
** * ** * * *
9614849 ACCTC-CAGCATAATCTTTAAGACCTCCGGGCCTAATTTTCAAGACCT-TTGTGTGAACC
192 ACCTCTGGGCATAATCTTTAAGAACTCAAGGCTTAATTTTCAAGACCTCTAG-GT-AAAC
* * * ***
9614907 TTTTTACATTTTTAAAGTTTCATGG-CCTTCGATTGGAGAAGCATTCAAAGATTTTGAA-ATCCC
1 TTTTTAAATTTTTAAAGTTTCATGGCCCTT-GATTGGAGGAGCATTCAAAAATTTT-AAGATTTG
* *
9614970 TAAGACCTCTG-GACATAATCTTTAAGATCTCTAGGCATAATTTTCA
64 TAAGACCTCTGAG-CATAATCTTTAAGACCTCTAGGCCTAATTTTCA
9615016 TGACCTCCAG
Statistics
Matches: 704, Mismatches: 102, Indels: 81
0.79 0.11 0.09
Matches are distributed among these distances:
228 1 0.00
229 41 0.06
230 134 0.19
231 11 0.02
232 1 0.00
235 1 0.00
239 3 0.00
240 1 0.00
241 3 0.00
245 1 0.00
248 16 0.02
249 48 0.07
250 125 0.18
251 107 0.15
252 17 0.02
253 185 0.26
254 9 0.01
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (249 bp):
TTTTTAAATTTTTAAAGTTTCATGGCCCTTGATTGGAGGAGCATTCAAAAATTTTAAGATTTGTA
AGACCTCTGAGCATAATCTTTAAGACCTCTAGGCCTAATTTTCAAGACTTTCGAGGAACTTTTTA
AATTTTTAAAGTTTCATGGCCCTTGATTAGAGAAGCATTCAAAGATTTTAAGATTTGTAAGACCT
CTGGGCATAATCTTTAAGAACTCAAGGCTTAATTTTCAAGACCTCTAGGTAAAC
Found at i:9614655 original size:22 final size:22
Alignment explanation
Indices: 9614619--9614671 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
9614609 GATTTGTAAA
*
9614619 ACCTCTAGGCATAATCTTT-AAG
1 ACCTCAAGGCATAAT-TTTCAAG
* *
9614641 ATCTCAAGGCTTAATTTTCAAG
1 ACCTCAAGGCATAATTTTCAAG
9614663 ACCTCAAGG
1 ACCTCAAGG
9614672 TAAACTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (22 bp):
ACCTCAAGGCATAATTTTCAAG
Found at i:9614680 original size:22 final size:22
Alignment explanation
Indices: 9614638--9614680 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9614628 CATAATCTTT
* *
9614638 AAGATCTCAAGGCTTAATTTTC
1 AAGACCTCAAGGCTAAATTTTC
9614660 AAGACCTCAAGG-TAAACTTTT
1 AAGACCTCAAGGCTAAA-TTTT
9614681 TAAATTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (22 bp):
AAGACCTCAAGGCTAAATTTTC
Found at i:9614957 original size:230 final size:228
Alignment explanation
Indices: 9614525--9614961 Score: 614
Period size: 230 Copynumber: 1.9 Consensus size: 228
9614515 GACCTTCGGG
* * * *
9614525 CCTAATTTTCAAAACCTTTAGGCGAACTCTTTAAATTTTTAAAGTTTCATGGCCTCTGATTAGAG
1 CCTAATTTTCAAAACCTTTAGGCAAACACTTTAAATTTTTAAAATTTCATGACCTCTGATTAGAG
* * *
9614590 TAGCATTCAAAGATTTTAAGATTTGTAAAACCTCTAGGCATAATCTTTAAGATCTCAAGGCTTAA
66 TAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTTAAGACCTCAAGGCCTAA
*
9614655 TTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTTTGATTGGATGAGCA
131 TTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTTCGATTGGATGAGCA
9614720 TTCAAAGATTTTAAGATTTGTAAGACATCTGGA
196 TTCAAAGATTTTAAGATTTGTAAGACATCTGGA
* *
9614753 CCTAATTTTCAAGACCTTT-GGACAAACCACTTTTAAATTTTTAAAATTTCATGACCTCTGATTG
1 CCTAATTTTCAAAACCTTTAGG-CAAA-CAC-TTTAAATTTTTAAAATTTCATGACCTCTGATTA
* * **
9614817 GAAG-AGCATTTAAAGATTTTAAGATTTGTAAGACCTCCA-GCATAATCTTTAAGACCTCCGGGC
63 G-AGTAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTTAAGACCTCAAGGC
** * *
9614880 CTAATTTTCAAGACCT-TTGTGTGAACCTTTTTACATTTTTAAAGTTTCATGGCCTTCGATTGGA
127 CTAATTTTCAAGACCTCAAG-GT-AAACTTTTTAAATTTTTAAAGTTTCATGGCCTTCGATTGGA
9614944 -GAAGCATTCAAAGATTTT
190 TG-AGCATTCAAAGATTTT
9614962 GAAATCCCTA
Statistics
Matches: 184, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
227 2 0.01
228 22 0.12
229 41 0.22
230 117 0.64
231 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (228 bp):
CCTAATTTTCAAAACCTTTAGGCAAACACTTTAAATTTTTAAAATTTCATGACCTCTGATTAGAG
TAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTTAAGACCTCAAGGCCTAA
TTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTTCGATTGGATGAGCA
TTCAAAGATTTTAAGATTTGTAAGACATCTGGA
Found at i:9614974 original size:125 final size:127
Alignment explanation
Indices: 9614753--9615021 Score: 307
Period size: 126 Copynumber: 2.1 Consensus size: 127
9614743 GACATCTGGA
9614753 CCTAATTTTCAAGACCTTTGGACAAACCACTTTTAAATTTTTAAAATTTCATGACCTCTGATTGG
1 CCTAATTTTCAAGACCTTTGGACAAACCACTTTTAAATTTTTAAAATTTCATGACCTCTGATTGG
* *** *
9614818 AAGAGCATTTAAAGATTTTAAGATTTGTAAGACCTCCAG-CATAATCTTTAAGACCTCCGGG
66 AAGAGCATTCAAAGATTTTAAGATCCCTAAGACCTCCAGACATAATCTTTAAGACCTCCAGG
** * * * *
9614879 CCTAATTTTCAAGACCTTTGTG-TGAACC-TTTTTACATTTTTAAAGTTTCATGGCCT-TCGATT
1 CCTAATTTTCAAGACCTTTG-GACAAACCACTTTTAAATTTTTAAAATTTCATGACCTCT-GATT
** * *
9614941 GG-AGAAGCATTCAAAGATTTTGAA-ATCCCTAAGACCTCTGGACATAATCTTTAAGATCTCTAG
64 GGAAG-AGCATTCAAAGATTTT-AAGATCCCTAAGACCTCCAGACATAATCTTTAAGACCTCCAG
9615004 G
127 G
* *
9615005 CATAATTTTCATGACCT
1 CCTAATTTTCAAGACCT
9615022 CCAGGCCTAA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
124 3 0.02
125 57 0.47
126 60 0.50
127 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (127 bp):
CCTAATTTTCAAGACCTTTGGACAAACCACTTTTAAATTTTTAAAATTTCATGACCTCTGATTGG
AAGAGCATTCAAAGATTTTAAGATCCCTAAGACCTCCAGACATAATCTTTAAGACCTCCAGG
Found at i:9614983 original size:230 final size:228
Alignment explanation
Indices: 9614512--9615006 Score: 610
Period size: 230 Copynumber: 2.2 Consensus size: 228
9614502 GCATAATTTT
* * * * *
9614512 TAAGACCT-TCGGGCCTAATTTTCAAAACCTTTAGGCGAACTCTTTAAATTTTTAAAGTTTCATG
1 TAAGACCTCT-GGACCTAATTTTCAAGACCTTTAGGCAAACACTTTAAATTTTTAAAATTTCATG
* *
9614576 GCCTCTGATTAGAGTAGCATTCAAAGATTTTAAGATTTGTAAAACCTCTAGGCATAATCTTTAAG
65 ACCTCTGATTAGAGTAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTTAAG
* *
9614641 ATCTCAAGGCTTAATTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTT
130 ACCTCAAGGCCTAATTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTT
* ***
9614706 TGATTGGATGAGCATTCAAAGATTTTAAGATTTG
195 CGATTGGATGAGCATTCAAAGATTTTAAGATCCC
*
9614740 TAAGACATCTGGACCTAATTTTCAAGACCTTT-GGACAAACCACTTTTAAATTTTTAAAATTTCA
1 TAAGACCTCTGGACCTAATTTTCAAGACCTTTAGG-CAAA-CAC-TTTAAATTTTTAAAATTTCA
* * *
9614804 TGACCTCTGATTGGAAG-AGCATTTAAAGATTTTAAGATTTGTAAGACCTCCA-GCATAATCTTT
63 TGACCTCTGATTAG-AGTAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTT
** ** * *
9614867 AAGACCTCCGGGCCTAATTTTCAAGACCT-TTGTGTGAACCTTTTTACATTTTTAAAGTTTCATG
127 AAGACCTCAAGGCCTAATTTTCAAGACCTCAAG-GT-AAACTTTTTAAATTTTTAAAGTTTCATG
9614931 GCCTTCGATTGGA-GAAGCATTCAAAGATTTTGAA-ATCCC
190 GCCTTCGATTGGATG-AGCATTCAAAGATTTT-AAGATCCC
* * *
9614970 TAAGACCTCTGGACATAATCTTT-AAGATCTCTAGGCA
1 TAAGACCTCTGGACCTAAT-TTTCAAGACCTTTAGGCA
9615007 TAATTTTCAT
Statistics
Matches: 229, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
227 2 0.01
228 31 0.14
229 42 0.18
230 145 0.63
231 9 0.04
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (228 bp):
TAAGACCTCTGGACCTAATTTTCAAGACCTTTAGGCAAACACTTTAAATTTTTAAAATTTCATGA
CCTCTGATTAGAGTAGCATTCAAAGATTTTAAGATTTGTAAAACCTCCAGGCATAATCTTTAAGA
CCTCAAGGCCTAATTTTCAAGACCTCAAGGTAAACTTTTTAAATTTTTAAAGTTTCATGGCCTTC
GATTGGATGAGCATTCAAAGATTTTAAGATCCC
Found at i:9615027 original size:22 final size:22
Alignment explanation
Indices: 9614983--9615044 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
9614973 GACCTCTGGA
* *
9614983 CATAATCTTT-AAGATCTCTAGG
1 CATAAT-TTTCAAGACCTCCAGG
*
9615005 CATAATTTTCATGACCTCCAGG
1 CATAATTTTCAAGACCTCCAGG
*
9615027 CCTAATTTTCAAGACCTC
1 CATAATTTTCAAGACCTC
9615045 TGGGCGAATC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 3 0.09
22 31 0.91
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (22 bp):
CATAATTTTCAAGACCTCCAGG
Found at i:9615122 original size:146 final size:145
Alignment explanation
Indices: 9614845--9615247 Score: 492
Period size: 146 Copynumber: 2.8 Consensus size: 145
9614835 TTAAGATTTG
* * * *
9614845 TAAGACCTCCA-GCATAATCTTTAAGACCTCCGGGCCTAATTTTCAAGACCTTTGTGTGAACCTT
1 TAAGACCTCTAGGCATAATCTTTAAGACCTCCAGGCCTAATTTTCAAGACCTCTGAGTGAA-CTT
* * *
9614909 TTTACATTTTTAAAGTTTCATGGCCT-TCGATTGGAGAAGCATTCAAAGATTTTGAAATCCCTAA
65 TTTA-A-ATTCAAAGTTTCATGGCCTCT-GATTGGAGGAGCATTCAAAGATTTTGAAATCCCTAA
**
9614973 GACCTCTGGA-CATAATCTT
127 GACCT-TAAAGCATAATCTT
* * * *
9614992 TAAGATCTCTAGGCATAAT-TTTCATGACCTCCAGGCCTAATTTTCAAGACCTCTGGGCGAATCT
1 TAAGACCTCTAGGCATAATCTTT-AAGACCTCCAGGCCTAATTTTCAAGACCTCTGAGTGAA-CT
*
9615056 TTTTAAATTCAAAGTTTCATGGCCTCTGATTGGAGGAGCATTCAAAGATTTTGAAATTCCTAAGA
64 TTTTAAATTCAAAGTTTCATGGCCTCTGATTGGAGGAGCATTCAAAGATTTTGAAATCCCTAAGA
9615121 CCTTAAAGCATAATCTT
129 CCTTAAAGCATAATCTT
* * * * * *
9615138 TAAGACCTTTGGGCATAATCTTTAAGATCTCTAGGTAC-AATTTTTAAGACCTCTGAGTGAACAT
1 TAAGACCTCTAGGCATAATCTTTAAGACCTCCAGG-CCTAATTTTCAAGACCTCTGAGTGAAC-T
* *
9615202 TTTTAAATTCAAAGTTTCATAGCCTCTGATTGGAGGAGTATTCAAA
64 TTTTAAATTCAAAGTTTCATGGCCTCTGATTGGAGGAGCATTCAAA
9615248 AAGTTTTTAA
Statistics
Matches: 223, Mismatches: 26, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
145 3 0.01
146 155 0.70
147 18 0.08
148 47 0.21
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (145 bp):
TAAGACCTCTAGGCATAATCTTTAAGACCTCCAGGCCTAATTTTCAAGACCTCTGAGTGAACTTT
TTAAATTCAAAGTTTCATGGCCTCTGATTGGAGGAGCATTCAAAGATTTTGAAATCCCTAAGACC
TTAAAGCATAATCTT
Found at i:9615144 original size:22 final size:22
Alignment explanation
Indices: 9615116--9615164 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
9615106 TTGAAATTCC
9615116 TAAGACCTTAAAGCATAATCTT
1 TAAGACCTTAAAGCATAATCTT
***
9615138 TAAGACCTTTGGGCATAATCTT
1 TAAGACCTTAAAGCATAATCTT
9615160 TAAGA
1 TAAGA
9615165 TCTCTAGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (22 bp):
TAAGACCTTAAAGCATAATCTT
Found at i:9623559 original size:3 final size:3
Alignment explanation
Indices: 9623551--9623576 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9623541 GGTAAGAAAC
9623551 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9623577 GTAAATGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9624451 original size:2 final size:2
Alignment explanation
Indices: 9624444--9624470 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9624434 AGCAATATGC
9624444 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9624471 CACACACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9624678 original size:8 final size:8
Alignment explanation
Indices: 9624665--9624707 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
9624655 GGGTACTTTC
9624665 TTTTTTAT
1 TTTTTTAT
9624673 TTTTTTAT
1 TTTTTTAT
9624681 TTTTTTAT
1 TTTTTTAT
9624689 TTTTTTAT
1 TTTTTTAT
9624697 TTTTTTAT
1 TTTTTTAT
9624705 TTT
1 TTT
9624708 CTAATGTTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTAT
Found at i:9627084 original size:21 final size:21
Alignment explanation
Indices: 9627060--9627108 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
9627050 TCTAATTAAT
*
9627060 TTAAAAT-AAAATTTTATATTA
1 TTAAAATAAAAATTATAT-TTA
9627081 TT-AAATAAAAATTATATTTA
1 TTAAAATAAAAATTATATTTA
9627101 TTAAAATA
1 TTAAAATA
9627109 TATATATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAATAAAAATTATATTTA
Found at i:9627097 original size:19 final size:21
Alignment explanation
Indices: 9627063--9627105 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9627053 AATTAATTTA
*
9627063 AAATAAAATTTTATA-TTATT
1 AAATAAAATATTATATTTATT
9627083 AAATAAAA-ATTATATTTATT
1 AAATAAAATATTATATTTATT
9627103 AAA
1 AAA
9627106 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATAAAATATTATATTTATT
Found at i:9629337 original size:14 final size:14
Alignment explanation
Indices: 9629320--9629367 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
9629310 TTTTTTAAAA
9629320 TTATTAAATATCTT
1 TTATTAAATATCTT
9629334 TTATTTAAATATCTTT
1 TTA-TTAAATATC-TT
* *
9629350 TTATAAAATATGTT
1 TTATTAAATATCTT
9629364 TTAT
1 TTAT
9629368 AAAAAGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 9 0.30
15 16 0.53
16 5 0.17
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (14 bp):
TTATTAAATATCTT
Found at i:9629372 original size:15 final size:15
Alignment explanation
Indices: 9629325--9629372 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
9629315 TAAAATTATT
**
9629325 AAATATCTTTTATTT
1 AAATATCTTTTATAA
9629340 AAATATCTTTT-TATA
1 AAATATCTTTTATA-A
*
9629355 AAATATGTTTTATAA
1 AAATATCTTTTATAA
9629370 AAA
1 AAA
9629373 GAAAAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 1 0.04
15 25 0.89
16 2 0.07
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (15 bp):
AAATATCTTTTATAA
Found at i:9629416 original size:17 final size:18
Alignment explanation
Indices: 9629382--9629416 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9629372 AGAAAAAAAT
9629382 GTTTTAAATGATATTTTG
1 GTTTTAAATGATATTTTG
*
9629400 GTTTTATATGA-ATTTTG
1 GTTTTAAATGATATTTTG
9629417 AATGGATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (18 bp):
GTTTTAAATGATATTTTG
Found at i:9629692 original size:13 final size:13
Alignment explanation
Indices: 9629650--9629694 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 13
9629640 AAATTTTTAA
9629650 ATATTTTAAATTAT
1 ATATTTTAAA-TAT
9629664 AATATTTTATAATAT
1 -ATATTTTA-AATAT
*
9629679 ATATTTGAAATAT
1 ATATTTTAAATAT
9629692 ATA
1 ATA
9629695 AAATCAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 8 0.29
14 7 0.25
15 11 0.39
16 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
ATATTTTAAATAT
Found at i:9630359 original size:3 final size:3
Alignment explanation
Indices: 9630351--9630413 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
9630341 GATTGCATCG
9630351 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9630399 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
9630414 GTTAGTTCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9631587 original size:21 final size:21
Alignment explanation
Indices: 9631554--9631593 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9631544 AATAAAAAAC
*
9631554 AAATTTTAGTTTTAATAATCA
1 AAATTTAAGTTTTAATAATCA
* *
9631575 AAATTTAATTTTTCATAAT
1 AAATTTAAGTTTTAATAAT
9631594 TTTACATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (21 bp):
AAATTTAAGTTTTAATAATCA
Found at i:9634883 original size:52 final size:51
Alignment explanation
Indices: 9634826--9634982 Score: 181
Period size: 52 Copynumber: 3.0 Consensus size: 51
9634816 TATAACCATA
* *
9634826 CAAACTTGTCCATTAATAATCTCTCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTT-TCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
* * * * *
9634878 CAAACTTACCTATTAAGAATCCCTTTCTTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTTCC-ATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
* * *
9634930 CAAACTTATCTATTAAGAATCT-TCTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTT-TCCATTAAGAATCTCTC-TCCTCTTAGAATTCTTCTCTTGCAAGT
9634982 C
1 C
9634983 TTCTTGTCCA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
51 3 0.03
52 83 0.95
53 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.43
Consensus pattern (51 bp):
CAAACTTTCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:9639016 original size:25 final size:24
Alignment explanation
Indices: 9638978--9639035 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
9638968 GATTAAAAAC
9638978 ATTAACAAAAATTATTAGAATTATGA
1 ATTAA-AAAAATTATTAGAATTAT-A
* *
9639004 TTTAAAAAAATTATTATAATTATA
1 ATTAAAAAAATTATTAGAATTATA
9639028 ATTAAAAA
1 ATTAAAAA
9639036 TAAAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.28
25 17 0.59
26 4 0.14
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (24 bp):
ATTAAAAAAATTATTAGAATTATA
Found at i:9639162 original size:14 final size:14
Alignment explanation
Indices: 9639143--9639172 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
9639133 GAATTTAAAC
9639143 CTAATATAAGTTAT
1 CTAATATAAGTTAT
9639157 CTAATATAAGTTAT
1 CTAATATAAGTTAT
9639171 CT
1 CT
9639173 GTGTCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (14 bp):
CTAATATAAGTTAT
Found at i:9640885 original size:11 final size:11
Alignment explanation
Indices: 9640869--9640894 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9640859 ATTTATCAAA
9640869 TTTATGTTAAT
1 TTTATGTTAAT
9640880 TTTATGTTAAT
1 TTTATGTTAAT
9640891 TTTA
1 TTTA
9640895 AGCTATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
TTTATGTTAAT
Found at i:9646023 original size:15 final size:14
Alignment explanation
Indices: 9646003--9646033 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
9645993 CAAAACTTCC
9646003 TCTTTTTTCTTTTTT
1 TCTTTTTT-TTTTTT
9646018 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
9646032 TC
1 TC
9646034 CTCTCTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:9649045 original size:7 final size:7
Alignment explanation
Indices: 9649001--9649054 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
9648991 ATAGTAATTT
9649001 TTTAAT-
1 TTTAATA
*
9649007 TTTAATT
1 TTTAATA
9649014 TTTATATA
1 TTTA-ATA
9649022 TTT-AT-
1 TTTAATA
*
9649027 TTTAAAA
1 TTTAATA
*
9649034 GTTAATA
1 TTTAATA
9649041 TTTAATA
1 TTTAATA
9649048 TTTAATA
1 TTTAATA
9649055 AAATAATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
5 3 0.08
6 9 0.23
7 22 0.56
8 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:9650441 original size:3 final size:3
Alignment explanation
Indices: 9650427--9650464 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
9650417 CAATACATAC
*
9650427 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9650465 AATTATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9650768 original size:22 final size:22
Alignment explanation
Indices: 9650739--9650791 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
9650729 TATATTATTA
9650739 ATTTACTATTAAGTTAT-AATT
1 ATTTACTATTAAGTTATCAATT
* *
9650760 -TTT-TTACTAAGTTATCAATT
1 ATTTACTATTAAGTTATCAATT
9650780 ATTTACTATTAA
1 ATTTACTATTAA
9650792 ATTAAGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 3 0.12
22 5 0.20
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.53
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCAATT
Found at i:9650797 original size:27 final size:27
Alignment explanation
Indices: 9650767--9650818 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
9650757 ATTTTTTTAC
9650767 TAAGTTATCAATT-ATTTACTATTAAAT
1 TAAGTTATC-ATTGATTTACTATTAAAT
*
9650794 TAAGTTATCGTTGATTTACTATTAA
1 TAAGTTATCATTGATTTACTATTAA
9650819 GTTATCACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.48
Consensus pattern (27 bp):
TAAGTTATCATTGATTTACTATTAAAT
Found at i:9650835 original size:22 final size:22
Alignment explanation
Indices: 9650792--9650836 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
9650782 TTACTATTAA
** * *
9650792 ATTAAGTTATCGTTGATTTACT
1 ATTAAGTTATCACTAATGTACT
9650814 ATTAAGTTATCACTAATGTACT
1 ATTAAGTTATCACTAATGTACT
9650836 A
1 A
9650837 CTACATGATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (22 bp):
ATTAAGTTATCACTAATGTACT
Found at i:9651823 original size:21 final size:22
Alignment explanation
Indices: 9651777--9651839 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
9651767 TAACTACTTG
*
9651777 CTATCAATGATTTATAACTAAG
1 CTATCAATGATTTATAACTAAA
* *
9651799 CTATCAAT-ATTTTTAATTAAA
1 CTATCAATGATTTATAACTAAA
* * *
9651820 CTATCATTAATTTATTACTA
1 CTATCAATGATTTATAACTA
9651840 TATTATGAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.40, C:0.13, G:0.03, T:0.44
Consensus pattern (22 bp):
CTATCAATGATTTATAACTAAA
Found at i:9651852 original size:22 final size:22
Alignment explanation
Indices: 9651827--9651883 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
9651817 AAACTATCAT
*
9651827 TAATTTATTACTATATTATGAA
1 TAATTTATTACTATATTATAAA
** * *
9651849 TAATTTAGAATTATTTTATAAA
1 TAATTTATTACTATATTATAAA
*
9651871 TGATTTATTACTA
1 TAATTTATTACTA
9651884 ATTTATTGAT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (22 bp):
TAATTTATTACTATATTATAAA
Found at i:9651999 original size:21 final size:22
Alignment explanation
Indices: 9651970--9652027 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
9651960 TAATGGTTAG
*
9651970 CTAATTTACTACTAAATT-TTA
1 CTAATTTACTACTAAATTATCA
* * *
9651991 TTGATTTACAACTAAATTATCA
1 CTAATTTACTACTAAATTATCA
9652013 CTAATTTACTACTAA
1 CTAATTTACTACTAA
9652028 GTTACTTACT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
CTAATTTACTACTAAATTATCA
Found at i:9652075 original size:22 final size:22
Alignment explanation
Indices: 9652033--9652219 Score: 100
Period size: 22 Copynumber: 8.7 Consensus size: 22
9652023 ACTAAGTTAC
*
9652033 TTACTACAAAATTATC-A--AT
1 TTACTACTAAATTATCAATGAT
*
9652052 TTATTACTAAATTATCAATGAT
1 TTACTACTAAATTATCAATGAT
* * * *
9652074 TTATTATTATATTAT-TATGTAT
1 TTACTACTAAATTATCAATG-AT
* *
9652096 TTACTGCTATATTAT-AAGTGAT
1 TTACTACTAAATTATCAA-TGAT
* * *
9652118 TTACTAATAAATTTTCAATTAT
1 TTACTACTAAATTATCAATGAT
* *
9652140 TTACTAC-AAATTATCACT-AGC
1 TTACTACTAAATTATCAATGA-T
* *
9652161 TTACTACTAAATTATCTATAAT
1 TTACTACTAAATTATCAATGAT
* * * * *
9652183 TTATTATTAAGTTATCATTAAT
1 TTACTACTAAATTATCAATGAT
* *
9652205 TTACTATTAAGTTAT
1 TTACTACTAAATTAT
9652220 TCATAATTTG
Statistics
Matches: 132, Mismatches: 27, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
19 14 0.11
20 2 0.02
21 19 0.14
22 92 0.70
23 5 0.04
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (22 bp):
TTACTACTAAATTATCAATGAT
Found at i:9652186 original size:11 final size:12
Alignment explanation
Indices: 9652172--9652219 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
9652162 TACTACTAAA
9652172 TTATCTA-TAAT
1 TTATCTATTAAT
*
9652183 TTAT-TATTAAG
1 TTATCTATTAAT
9652194 TTATC-ATTAAT
1 TTATCTATTAAT
*
9652205 TTA-CTATTAAG
1 TTATCTATTAAT
9652216 TTAT
1 TTAT
9652220 TCATAATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
10 3 0.10
11 27 0.90
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (12 bp):
TTATCTATTAAT
Found at i:9652226 original size:22 final size:21
Alignment explanation
Indices: 9652161--9652243 Score: 103
Period size: 22 Copynumber: 3.8 Consensus size: 21
9652151 TATCACTAGC
* *
9652161 TTACTACTAAATTATCTATAAT
1 TTACTATTAAGTTATC-ATAAT
*
9652183 TTATTATTAAGTTATCATTAAT
1 TTACTATTAAGTTATCA-TAAT
9652205 TTACTATTAAGTTATTCATAAT
1 TTACTATTAAGTTA-TCATAAT
*
9652227 TTGCTATTAAGTTATCA
1 TTACTATTAAGTTATCA
9652244 GTTATCACTT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.07
22 47 0.87
23 3 0.06
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (21 bp):
TTACTATTAAGTTATCATAAT
Found at i:9652291 original size:13 final size:13
Alignment explanation
Indices: 9652268--9652300 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9652258 ATTATTAAAT
9652268 TATTGATAATTTG
1 TATTGATAATTTG
9652281 CTATT-ATAATTTG
1 -TATTGATAATTTG
9652294 TATTGAT
1 TATTGAT
9652301 TTACTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 10 0.56
14 4 0.22
ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55
Consensus pattern (13 bp):
TATTGATAATTTG
Found at i:9652335 original size:22 final size:22
Alignment explanation
Indices: 9652307--9652359 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
9652297 TGATTTACTT
*
9652307 TTAAGTTTTCAATAATTAACTA
1 TTAAGTTATCAATAATTAACTA
* *
9652329 TTAAGTTATCAATTATTTACTA
1 TTAAGTTATCAATAATTAACTA
9652351 TTAAGTTAT
1 TTAAGTTAT
9652360 TATTGATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.49
Consensus pattern (22 bp):
TTAAGTTATCAATAATTAACTA
Found at i:9652368 original size:22 final size:22
Alignment explanation
Indices: 9652294--9652369 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
9652284 TTATAATTTG
*
9652294 TATTGATTTACTTTTAAGTT-T
1 TATTGATTTACTATTAAGTTAT
* * *
9652315 TCAATAATTAACTATTAAGTTAT
1 T-ATTGATTTACTATTAAGTTAT
*
9652338 CAATT-ATTTACTATTAAGTTAT
1 -TATTGATTTACTATTAAGTTAT
9652360 TATTGATTTA
1 TATTGATTTA
9652370 TTAATTACTA
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
21 4 0.09
22 36 0.84
23 3 0.07
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTGATTTACTATTAAGTTAT
Found at i:9652496 original size:22 final size:22
Alignment explanation
Indices: 9652471--9652680 Score: 70
Period size: 22 Copynumber: 9.4 Consensus size: 22
9652461 TTTACTACCG
9652471 AGTTATCATTGATTTATTAATA
1 AGTTATCATTGATTTATTAATA
* * * * * *
9652493 AGTTATTAGTAATTAACTATTA
1 AGTTATCATTGATTTATTAATA
* *
9652515 TGTTATTACTTATT-TTTTATTAACTA
1 AGTTA-T-C--ATTGATTTATTAA-TA
* *
9652541 TGTTATCATTGATTTATTACTA
1 AGTTATCATTGATTTATTAATA
*
9652563 AGTTTTCAATT-ATTTATTACA-A
1 AGTTATC-ATTGATTTATTA-ATA
* * * * *
9652585 ACTTATAACTGATTTAATACTA
1 AGTTATCATTGATTTATTAATA
* * * *
9652607 AATTATC-TATGATTCATGACTA
1 AGTTATCAT-TGATTTATTAATA
* * *
9652629 ATTTATCATTAATTTATTATTA
1 AGTTATCATTGATTTATTAATA
* *
9652651 AGTTGTC-TATGATTTATTATTA
1 AGTTATCAT-TGATTTATTAATA
*
9652673 AATTATCA
1 AGTTATCA
9652681 ATTATCATTG
Statistics
Matches: 134, Mismatches: 40, Indels: 27
0.67 0.20 0.13
Matches are distributed among these distances:
21 3 0.02
22 103 0.77
23 12 0.09
24 1 0.01
25 6 0.04
26 9 0.07
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.50
Consensus pattern (22 bp):
AGTTATCATTGATTTATTAATA
Found at i:9652679 original size:44 final size:43
Alignment explanation
Indices: 9652543--9652680 Score: 123
Period size: 44 Copynumber: 3.1 Consensus size: 43
9652533 ATTAACTATG
* * * *
9652543 TTATCATTGATTTATTACTAAGTTTTCAATTATTTATTACAAA
1 TTATCATTGATTTATTACTAAGTTATCTATGATTTATTATAAA
* * * * * * *
9652586 CTTATAACTGATTTAATACTAAATTATCTATGATTCATGACTAAT
1 -TTATCATTGATTTATTACTAAGTTATCTATGATTTATTA-TAAA
* * *
9652631 TTATCATTAATTTATTATTAAGTTGTCTATGATTTATTATTAAA
1 TTATCATTGATTTATTACTAAGTTATCTATGATTTATTA-TAAA
9652675 TTATCA
1 TTATCA
9652681 ATTATCATTG
Statistics
Matches: 71, Mismatches: 22, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
44 69 0.97
45 2 0.03
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (43 bp):
TTATCATTGATTTATTACTAAGTTATCTATGATTTATTATAAA
Found at i:9652779 original size:434 final size:435
Alignment explanation
Indices: 9652114--9652947 Score: 1079
Period size: 434 Copynumber: 1.9 Consensus size: 435
9652104 ATATTATAAG
* *
9652114 TGATTTACTAATAAATTTTCAATTATTTACTACAAATTATCACTAGCTTACTACTAAATTATCTA
1 TGATTTACTAATAAATTTTCAATTATTTACTACAAATTATAACTAGCTTAATACTAAATTATCTA
* * * * *
9652179 TAATTTATTATTAAGTTATCATTAATTTACTATTAAGTTATTCATAATTTGCTATTAAGTTATCA
66 TAATTCATGACTAAGTTATCATTAATTTACTATTAAGTTATTCATAATTTACTATTAAATTATCA
* * * * * * *
9652244 GTTATCACTTATTGATTATTAAATTATTGATAATTTGCTATTATAATTTGTATTGATTTACTTTT
131 ATTATCACTTATTGACTACTAAATTATTGATAATTTACTATTATAATTTATACTAATTTACTTTT
* * * * *
9652309 AAGTTTTCAATAATTAACTATTAAGTTATCAATTATTTACTATTAAGTTATTATTGATTTATTAA
196 AAATTTTCAATAATTAACTACTAAGTTATCAATTATTTACTACTAAGTTATTAATAATTTATTAA
* * *
9652374 TTACTAGGTAATTTATGATTTATAATACTAAGTTTATCAATTAATTAATACTAAAATAAAACTT-
261 CTACTAAGTAATTTATAATTTATAATACTAAGTTTATCAATTAATTAATACTAAAATAAAA-TTA
* * * *
9652438 ATTTACTATAAAATTATTATTAATTTACTACCGAGTTATCATTGATTTATTAATAAGTTATTAGT
325 ATTTACTATAAAATTATCACTAATTTACTACCAAGTTATCATT-ATTTATTAATAAGTTATTAAT
9652503 AATTAACTATTATGTTATTACTTATTTTTTATTAACTATGTTATCAT
389 AATTAACTATTATGTTATTACTTATTTTTTATTAACTATGTTATCAT
* * * * *
9652550 TGATTTATTACTAAGTTTTCAATTATTTATTACAAACTTATAACT-GATTTAATACTAAATTATC
1 TGATTTACTAATAAATTTTCAATTATTTACTACAAA-TTATAACTAG-CTTAATACTAAATTATC
* * * * * *
9652614 TATGATTCATGACTAATTTATCATTAATTTATTATTAAGTT-GTCTATGATTTATTATTAAATTA
64 TATAATTCATGACTAAGTTATCATTAATTTACTATTAAGTTATTC-ATAATTTACTATTAAATTA
**
9652678 TCAATTATCA-TTGATTGACTACTAGGTTA-TGATAATTTACTATTA-AA-TTATACTAATTTAC
128 TCAATTATCACTT-ATTGACTACTAAATTATTGATAATTTACTATTATAATTTATACTAATTTAC
*
9652739 TTTTAAATTTTCAATAATTAACTACTAAGTTATTAATTATTTACTACTAAGTTATTAATAATTTA
192 TTTTAAATTTTCAATAATTAACTACTAAGTTATCAATTATTTACTACTAAGTTATTAATAATTTA
* * * * * *
9652804 TTTACTACTAAGTTATTTATAATTTATACTACTAAGTTTATCATTTAATTAATATTAAACTAAAA
257 TTAACTACTAAGTAATTTATAATTTATAATACTAAGTTTATCAATTAATTAATACTAAAATAAAA
* * * * * *
9652869 TTAATTTACTATTAAGTTATCACTAATTTATTACTAAGTTATTATTATTTATTATTAAGTTATTA
322 TTAATTTACTATAAAATTATCACTAATTTACTACCAAGTTATCATTATTTATTAATAAGTTATTA
**
9652934 ATCTTTAACTATTA
387 ATAATTAACTATTA
9652948 AATTATTTGT
Statistics
Matches: 339, Mismatches: 54, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
433 31 0.09
434 161 0.47
435 2 0.01
436 52 0.15
437 93 0.27
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.49
Consensus pattern (435 bp):
TGATTTACTAATAAATTTTCAATTATTTACTACAAATTATAACTAGCTTAATACTAAATTATCTA
TAATTCATGACTAAGTTATCATTAATTTACTATTAAGTTATTCATAATTTACTATTAAATTATCA
ATTATCACTTATTGACTACTAAATTATTGATAATTTACTATTATAATTTATACTAATTTACTTTT
AAATTTTCAATAATTAACTACTAAGTTATCAATTATTTACTACTAAGTTATTAATAATTTATTAA
CTACTAAGTAATTTATAATTTATAATACTAAGTTTATCAATTAATTAATACTAAAATAAAATTAA
TTTACTATAAAATTATCACTAATTTACTACCAAGTTATCATTATTTATTAATAAGTTATTAATAA
TTAACTATTATGTTATTACTTATTTTTTATTAACTATGTTATCAT
Found at i:9652793 original size:15 final size:15
Alignment explanation
Indices: 9652775--9652822 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
9652765 AAGTTATTAA
9652775 TTATTTACTACTAAG
1 TTATTTACTACTAAG
*
9652790 TTA-TTA--A-TAAT
1 TTATTTACTACTAAG
9652801 TTATTTACTACTAAG
1 TTATTTACTACTAAG
9652816 TTATTTA
1 TTATTTA
9652823 TAATTTATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 6 0.22
12 4 0.15
14 4 0.15
15 13 0.48
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.52
Consensus pattern (15 bp):
TTATTTACTACTAAG
Found at i:9652809 original size:26 final size:25
Alignment explanation
Indices: 9652759--9652841 Score: 113
Period size: 26 Copynumber: 3.4 Consensus size: 25
9652749 TCAATAATTA
9652759 ACTACTAAGTTA-T-TAA-TTATTT
1 ACTACTAAGTTATTATAATTTATTT
9652781 ACTACTAAGTTATTAATAATTTATTT
1 ACTACTAAGTTATT-ATAATTTATTT
9652807 ACTACTAAGTTATTTATAATTTA--T
1 ACTACTAAGTTA-TTATAATTTATTT
9652831 ACTACTAAGTT
1 ACTACTAAGTT
9652842 TATCATTTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.21
23 1 0.02
24 12 0.21
25 3 0.05
26 26 0.46
27 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (25 bp):
ACTACTAAGTTATTATAATTTATTT
Found at i:9652852 original size:26 final size:24
Alignment explanation
Indices: 9652759--9652853 Score: 74
Period size: 26 Copynumber: 3.9 Consensus size: 24
9652749 TCAATAATTA
*
9652759 ACTACTAAG-T-TA-TTAATTATTT
1 ACTACTAAGTTATATTTAATT-TAT
*
9652781 ACTACTAAGTTAT-TAATAATTTATTT
1 ACTACTAAGTTATAT-TTAATTTA--T
9652807 ACTACTAAGTTAT-TTATAATTTAT
1 ACTACTAAGTTATATT-TAATTTAT
9652831 ACTACTAAGTTTATCATTTAATT
1 ACTACTAAG-TTAT-ATTTAATT
9652854 AATATTAAAC
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
22 9 0.15
23 1 0.02
24 12 0.20
25 9 0.15
26 27 0.45
27 2 0.03
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.49
Consensus pattern (24 bp):
ACTACTAAGTTATATTTAATTTAT
Found at i:9652911 original size:11 final size:11
Alignment explanation
Indices: 9652881--9652933 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
9652871 AATTTACTAT
*
9652881 TAAGTTATCAC
1 TAAGTTATTAC
*
9652892 TAATTTATTAC
1 TAAGTTATTAC
9652903 TAAGTTATTA-
1 TAAGTTATTAC
* * *
9652913 TTATTTATTAT
1 TAAGTTATTAC
9652924 TAAGTTATTA
1 TAAGTTATTA
9652934 ATCTTTAACT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (11 bp):
TAAGTTATTAC
Found at i:9652984 original size:22 final size:22
Alignment explanation
Indices: 9652703--9652986 Score: 115
Period size: 22 Copynumber: 12.7 Consensus size: 22
9652693 TGACTACTAG
*
9652703 GTTATGATA-ATTTACTATTAA
1 GTTATTATATATTTACTATTAA
* *
9652724 ATTA-TACTA-ATTTACTTTTAA
1 GTTATTA-TATATTTACTATTAA
* * *
9652745 ATT-TTCA-ATAATTAACTACTAA
1 GTTATT-ATAT-ATTTACTATTAA
*
9652767 GTTATTA-ATTATTTACTACTAA
1 GTTATTATA-TATTTACTATTAA
*
9652789 GTTATTAATAATTTATTTACTACTAA
1 GTTATT-AT-A--TATTTACTATTAA
*
9652815 GTTATT-TATAATTTATACTACTAA
1 GTTATTATAT-A-TT-TACTATTAA
* * * *
9652839 GTTTATCATTTAATTAATATTAA
1 G-TTATTATATATTTACTATTAA
** **
9652862 ACTAAAAT-TAATTTACTATTAA
1 GTTATTATAT-ATTTACTATTAA
* * *
9652884 GTTATCACTA-ATTTATTACTAA
1 GTTATTA-TATATTTACTATTAA
*
9652906 GTTATTAT-TATTTATTATTAA
1 GTTATTATATATTTACTATTAA
*
9652927 GTTATTA-ATCTTTAACTATTAA
1 GTTATTATATATTT-ACTATTAA
* * *
9652949 ATTATT-TGTGATTTACTATTAT
1 GTTATTATAT-ATTTACTATTAA
9652971 GTTATTATATATTTAC
1 GTTATTATATATTTAC
9652987 AGATATGTTA
Statistics
Matches: 203, Mismatches: 35, Indels: 49
0.71 0.12 0.17
Matches are distributed among these distances:
20 2 0.01
21 45 0.22
22 96 0.47
23 20 0.10
24 12 0.06
25 6 0.03
26 22 0.11
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (22 bp):
GTTATTATATATTTACTATTAA
Found at i:9656292 original size:61 final size:61
Alignment explanation
Indices: 9656220--9656337 Score: 159
Period size: 61 Copynumber: 1.9 Consensus size: 61
9656210 AAGAGACAAA
* ** *
9656220 TCCAGATGAGCTCAACTCAA-GAAATAAG-TTAGAGTTCGTGTTTTGAATATCAGTTTGTAAG
1 TCCAGAGGAGCTCAACTCAAGGAAA-AAGTTTA-AGTTCGTGTTTCAAAGATCAGTTTGTAAG
*
9656281 TCCAGAGGAGCTCGACTCAAGGAAAAAGTTTAAGTTCGTGTTTCAAAGATCAGTTTG
1 TCCAGAGGAGCTCAACTCAAGGAAAAAGTTTAAGTTCGTGTTTCAAAGATCAGTTTG
9656338 CATGAAGCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
61 43 0.86
62 7 0.14
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (61 bp):
TCCAGAGGAGCTCAACTCAAGGAAAAAGTTTAAGTTCGTGTTTCAAAGATCAGTTTGTAAG
Found at i:9656611 original size:51 final size:52
Alignment explanation
Indices: 9656529--9656630 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 52
9656519 GATAAGAAGG
9656529 CTTGCAAAAGAAAAATTTCAAGAGAAAAAAGATTCTTAAAAGGCAAGTTTAA
1 CTTGCAAAAGAAAAATTTCAAGAGAAAAAAGATTCTTAAAAGGCAAGTTTAA
* * * * *
9656581 CTTGTAAAA-AAAAATTTTAAGAGGAAAAAGATTCTTAATAGGTAAGTTTA
1 CTTGCAAAAGAAAAATTTCAAGAGAAAAAAGATTCTTAAAAGGCAAGTTTA
9656631 TATAGTTACA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 37 0.82
52 8 0.18
ACGTcount: A:0.50, C:0.07, G:0.16, T:0.27
Consensus pattern (52 bp):
CTTGCAAAAGAAAAATTTCAAGAGAAAAAAGATTCTTAAAAGGCAAGTTTAA
Found at i:9657166 original size:31 final size:30
Alignment explanation
Indices: 9657069--9657168 Score: 94
Period size: 31 Copynumber: 3.3 Consensus size: 30
9657059 GGCTTTTTAG
* **
9657069 CCTAACAAGTGATATCAGAGCTATCATGAT
1 CCTAACAAGTAATATCAGAGCTATGGTGAT
* *
9657099 CCTAACAAG-AAGTATCAGAGCTTTGGAGATT
1 CCTAACAAGTAA-TATCAGAGCTATGGTGA-T
* * *
9657130 TCTAACAAGTTATATCAAAGCTATGGTGAT
1 CCTAACAAGTAATATCAGAGCTATGGTGAT
9657160 CCCTAACAA
1 -CCTAACAA
9657169 CACCTCACCC
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
29 1 0.02
30 23 0.42
31 30 0.55
32 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (30 bp):
CCTAACAAGTAATATCAGAGCTATGGTGAT
Found at i:9659037 original size:24 final size:24
Alignment explanation
Indices: 9659005--9659051 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
9658995 CTTTTTTTTG
* *
9659005 AATTATATTTTTAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
9659030 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
9659052 GATATGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:9661092 original size:62 final size:60
Alignment explanation
Indices: 9661026--9661223 Score: 202
Period size: 62 Copynumber: 3.2 Consensus size: 60
9661016 AAACACCTTA
* *
9661026 AATAATCTCTTTCAATTTTTATGAGGGGATTATTTAAGGTGTTTTTAGCTAAAAATAACTTG
1 AATAATC-CTTTCAATTTTTATGAAGGGATTATTCAAGGTGTTTTTAGCTAAAAAT-ACTTG
* * ** *
9661088 AATAA-CCTCATTCAATATTT-TGTAAGTGATTATTCAAGGCATTTTGTGGCTAAAAATACTTG
1 AATAATCCT--TTCAATTTTTATG-AAGGGATTATTCAAGGTGTTTT-TAGCTAAAAATACTTG
* * * *
9661150 AATAATCCTTTTCAATTTTTATAAAGGAATTATTCAAGGTGTTTTTCGCTAGAAAATGCCTTG
1 AATAATCC-TTTCAATTTTTATGAAGGGATTATTCAAGGTGTTTTTAGCTA-AAAAT-ACTTG
9661213 AATAATCCTTT
1 AATAATCCTTT
9661224 ACCAAAATGC
Statistics
Matches: 112, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
60 2 0.02
61 8 0.07
62 76 0.68
63 25 0.22
64 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (60 bp):
AATAATCCTTTCAATTTTTATGAAGGGATTATTCAAGGTGTTTTTAGCTAAAAATACTTG
Found at i:9662496 original size:18 final size:18
Alignment explanation
Indices: 9662425--9662496 Score: 58
Period size: 18 Copynumber: 3.8 Consensus size: 18
9662415 TTAAAGACCA
*
9662425 AATTAAAATAAATACAA-T
1 AATTAAAATAAA-AAAATT
* *
9662443 AATTAAAA-ATAATAATT
1 AATTAAAATAAAAAAATT
9662460 CAATTAAACAATCAAAAAAATT
1 -AATT-AA-AAT-AAAAAAATT
9662482 AATTAAAATAAAAAA
1 AATTAAAATAAAAAA
9662497 TTGAAAGGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
16 3 0.07
17 3 0.07
18 18 0.41
19 5 0.11
20 4 0.09
21 4 0.09
22 7 0.16
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (18 bp):
AATTAAAATAAAAAAATT
Found at i:9664200 original size:22 final size:23
Alignment explanation
Indices: 9664161--9664203 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
9664151 TGCGTATACT
*
9664161 TTTAGAAAATAAGAAAATTAATG
1 TTTAAAAAATAAGAAAATTAATG
*
9664184 TTTAAAAAATAA-TAAATTAA
1 TTTAAAAAATAAGAAAATTAA
9664204 GAAAAATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
TTTAAAAAATAAGAAAATTAATG
Found at i:9664253 original size:10 final size:9
Alignment explanation
Indices: 9664238--9664305 Score: 61
Period size: 9 Copynumber: 7.6 Consensus size: 9
9664228 AAAACAGTTT
9664238 TAAAAAATA
1 TAAAAAATA
9664247 -ATAAAAATA
1 TA-AAAAATA
9664256 TAAAAAATGA
1 TAAAAAAT-A
*
9664266 CAAAAAATA
1 TAAAAAATA
9664275 T-AAAAATA
1 TAAAAAATA
* *
9664283 TATATAATAA
1 TAAAAAAT-A
9664293 TAAAAAATA
1 TAAAAAATA
9664302 -AAAA
1 TAAAA
9664306 TCTCTGAGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
8 13 0.27
9 19 0.40
10 16 0.33
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (9 bp):
TAAAAAATA
Found at i:9664259 original size:18 final size:19
Alignment explanation
Indices: 9664238--9664299 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
9664228 AAAACAGTTT
9664238 TAAAAAATA-ATAAAAATA
1 TAAAAAATACATAAAAATA
9664256 TAAAAAATGACA-AAAAATA
1 TAAAAAAT-ACATAAAAATA
* *
9664275 TAAAAATATATATAATAATA
1 TAAAAA-ATACATAAAAATA
9664295 -AAAAA
1 TAAAAA
9664300 TAAAAATCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.21
19 21 0.55
20 9 0.24
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (19 bp):
TAAAAAATACATAAAAATA
Found at i:9664297 original size:27 final size:27
Alignment explanation
Indices: 9664220--9664305 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
9664210 TGTGTATGGA
* **
9664220 AAAAATATAAAACAGTTTTAAAAAATAAT
1 AAAAATATAAAA-AATAATAAAAAAT-AT
* *
9664249 AAAAATATAAAAAATGACAAAAAATAT
1 AAAAATATAAAAAATAATAAAAAATAT
* *
9664276 AAAAATATATATAATAATAAAAAATA-
1 AAAAATATAAAAAATAATAAAAAATAT
9664302 AAAA
1 AAAA
9664306 TCTCTGAGGA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.08
27 24 0.49
28 9 0.18
29 12 0.24
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (27 bp):
AAAAATATAAAAAATAATAAAAAATAT
Done.