Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 46 of 117
Found at i:10863571 original size:25 final size:25
Alignment explanation
Indices: 10863537--10863610 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
10863527 AGCAATGTGT
* *
10863537 TCAAACACACCCTTCAACAAACCAC
1 TCAAAAACACCATTCAACAAACCAC
* * *
10863562 TCAAAAACACCATTTAGCAAACCAT
1 TCAAAAACACCATTCAACAAACCAC
* * *
10863587 TCAGAAACACCATTTAGCAAACCA
1 TCAAAAACACCATTCAACAAACCA
10863611 TTCAGCATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (25 bp):
TCAAAAACACCATTCAACAAACCAC
Found at i:10863587 original size:12 final size:12
Alignment explanation
Indices: 10863570--10863634 Score: 67
Period size: 12 Copynumber: 5.3 Consensus size: 12
10863560 ACTCAAAAAC
*
10863570 ACCATTTAGCAA
1 ACCATTCAGCAA
*
10863582 ACCATTCAGAAA
1 ACCATTCAGCAA
*
10863594 CACCATTTAGCAA
1 -ACCATTCAGCAA
*
10863607 ACCATTCAGCAT
1 ACCATTCAGCAA
* *
10863619 ACGATTCAGCAT
1 ACCATTCAGCAA
10863631 ACCA
1 ACCA
10863635 ATATCATACA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
12 34 0.77
13 10 0.23
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.22
Consensus pattern (12 bp):
ACCATTCAGCAA
Found at i:10863600 original size:13 final size:12
Alignment explanation
Indices: 10863555--10863615 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
10863545 ACCCTTCAAC
* *
10863555 AAACCACTCAAA
1 AAACCATTCAGA
* *
10863567 AACACCATTTAGC
1 AA-ACCATTCAGA
10863580 AAACCATTCAGA
1 AAACCATTCAGA
* *
10863592 AACACCATTTAGC
1 AA-ACCATTCAGA
10863605 AAACCATTCAG
1 AAACCATTCAG
10863616 CATACGATTC
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
12 20 0.53
13 18 0.47
ACGTcount: A:0.46, C:0.30, G:0.07, T:0.18
Consensus pattern (12 bp):
AAACCATTCAGA
Found at i:10863611 original size:25 final size:25
Alignment explanation
Indices: 10863554--10863615 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
10863544 CACCCTTCAA
* *
10863554 CAAACCACTCAAAAACACCATTTAG
1 CAAACCATTCAGAAACACCATTTAG
10863579 CAAACCATTCAGAAACACCATTTAG
1 CAAACCATTCAGAAACACCATTTAG
10863604 CAAACCATTCAG
1 CAAACCATTCAG
10863616 CATACGATTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.45, C:0.31, G:0.06, T:0.18
Consensus pattern (25 bp):
CAAACCATTCAGAAACACCATTTAG
Found at i:10864260 original size:54 final size:54
Alignment explanation
Indices: 10864202--10864311 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
10864192 CCTTCAATAA
* * * *
10864202 TTATGTATAAAAATTAAAAAAAATTAGTGCAGGTATTTTTCTAGAATAAATGCC
1 TTATGTATAAAAATTAAAAAAAATTAGTGAAAGCATTTTTCTAGAATAAACGCC
** * * *
10864256 TTATGTATGTAAATTAGAAGAAATTAGTGAAAGCCTTTTTCTAGAATAAACGCC
1 TTATGTATAAAAATTAAAAAAAATTAGTGAAAGCATTTTTCTAGAATAAACGCC
10864310 TT
1 TT
10864312 CACTAACTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (54 bp):
TTATGTATAAAAATTAAAAAAAATTAGTGAAAGCATTTTTCTAGAATAAACGCC
Found at i:10864546 original size:186 final size:185
Alignment explanation
Indices: 10864256--10865366 Score: 1286
Period size: 186 Copynumber: 6.0 Consensus size: 185
10864246 AATAAATGCC
** * * * *
10864256 TTATGTATGTAAATTAGAAGAAATTAGTGAAAGCCTTTTTCTAGAATAAACGCCTTCACTAACTG
1 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAATG
* * * * * **
10864321 TCTTAAAATTTGAGTTATGGAAAATTGAATGCATTTTTCATTGGAAGACGCCTTTAATAATCTTA
66 TCTTAAAATTTGAGTTATGAAAAATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCA
* * * * *
10864386 AAAATTTTAAGAAAAAATTATTGAAAGCGTTTATTCTCAAAAAATGCCTTTAATAA
131 AAAATTTTAA-AAAAAATTATTGAAGGCATTTGTTCTCAAAAAATACCTTCAATAA
** * *
10864442 TTATGTACATAAATTAGAAGGAATTAATGAAGGTATTTTTCTAGAATAAA-GACCTTCACTAAAT
1 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACG-CCTTCACTAAAT
* * * * **
10864506 GTCTTAAAATTTGAGTTGTGAAAAATTAAAGGCGTTTTTCACTGGAAGACGCCTTTCATAATCTT
65 GTCTTAAAATTTGAGTTATGAAAAATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCC
* * * * *
10864571 AAAAATTTTAAAAAGAAATTATTAAAAGCATTTGTTCTAAAAAAACATCTTCAATAA
130 AAAAATTTTAAAAA-AAATTATTGAAGGCATTTGTTCTCAAAAAATACCTTCAATAA
*
10864628 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAACG
1 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAATG
* * * * * *
10864693 TCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTTTCATTGAAAGATACTTTTAATAATCCCA
66 TCTTAAAATTTGAGTTATGAAAAATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCA
* *
10864758 AAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTTTCAAAAAAATACATTCAATAA
131 AAAATTTTAA-AAAAAATTATTGAAGGCATTTGTTCTC-AAAAAATACCTTCAATAA
* * * ***
10864815 TTATGTACATAAATTAGAAGAAATTAATGAAGGTATTTTT-TAGAATAAACGCCTTCACTAACCA
1 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAATG
* * * *
10864879 TCTTAAAATATGAGTTAAGAAAAATTAAAAGCATTTTTCACTGGAAGACACATTTAATAATCCCA
66 TCTTAAAATTTGAGTTATGAAAAATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCA
* * * * *
10864944 AAAATTTTAAAAGAAAACTATTGAAGGCGTTTGTTCTCAGAAAATGCTTTCAATAA
131 AAAATTTTAAAA-AAAATTATTGAAGGCATTTGTTCTCAAAAAATACCTTCAATAA
* *
10865000 TTATGTA-GTAAATTAGAAAGAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCA
1 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAA--A
* * * * * * *
10865064 T-T-TTAAATTTTAAGTTGTGAAAAATTGAAA-GCTTTTTTCATTGGAATACGCCTTTAATAATC
64 TGTCTTAAAATTTGAGTTATGAAAAATT-AAAGGCATTTTTCACTGGAAGACACCTTTAATAATC
* * *
10865126 TCAAAAATTTTTAAAAAAATTATTGAAGGCATTTCTTCTCAAAAAAATACCTTCAATAA
128 CCAAAAATTTTAAAAAAAATTATTGAAGGCATTTGTTCTC-AAAAAATACCTTCAATAA
* *
10865185 TTACGTACATAAATTA-AAAAGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACT-AAT
1 TTATGTACATAAATTAGAAAA-AATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAAT
* * * * * * *
10865248 CGTATTAAAATTTGAGCTAT-AAAATATTGAAGGCGTTTTTTACTAGAAGACACCTGTAATAATC
65 -GTCTTAAAATTTGAGTTATGAAAA-ATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATC
* * * * *
10865312 CCAAAAGTTTTAAAAAAAAATTATTGAATGTATTTGTTCTAAAAAAATGCCTTCA
128 CCAAAAATTTT-AAAAAAAATTATTGAAGGCATTTGTTCTCAAAAAATACCTTCA
10865367 CTAACCATCT
Statistics
Matches: 792, Mismatches: 114, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
183 2 0.00
184 49 0.06
185 140 0.18
186 521 0.66
187 80 0.10
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (185 bp):
TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAATG
TCTTAAAATTTGAGTTATGAAAAATTAAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCA
AAAATTTTAAAAAAAATTATTGAAGGCATTTGTTCTCAAAAAATACCTTCAATAA
Found at i:10864949 original size:372 final size:372
Alignment explanation
Indices: 10864256--10865366 Score: 1443
Period size: 372 Copynumber: 3.0 Consensus size: 372
10864246 AATAAATGCC
* * *
10864256 TTATGTATGTAAATTAGAAGAAATTAGTGAAAGCCTTTTTCTAGAATAAACGCCTTCACT-AACT
1 TTATGTA-GTAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAAC-
* * * *
10864320 GTCTTAAAATTTGAGTTATGGAAAATTGAATGCATTTTTCATTGGAAGACGCCTTTAATAATCTT
64 GTCTTAAAATTTGAGTTGTGAAAAATTGAAAGCATTTTTCATTGGAAGACGCCTTTAATAATCTC
* * * *
10864385 AAAAATTTTAAGAAAAAATTATTGAAAGCGTTTATTCTC-AAAAAATGCCTTTAATAATTATGTA
129 AAAAATTTTAAGAAAAAATTATTGAAGGCATTTATTCTCAAAAAAATACCTTCAATAATTATGTA
* *
10864449 CATAAATTAGAAGGAATTAATGAAGGTATTTTTCTAGAATAAAGACCTTCACTAAATGTCTTAAA
194 CATAAATTAGAAGAAATTAATGAAGGTATTTTTCTAGAATAAAG-CCTTCACTAAACGTCTTAAA
** * * **
10864514 ATTTGAGTTGTGAAAAATTAAAGGCGTTTTTCACTGGAAGACGCCTTTCATAATCTTAAAAATTT
258 ATTTGAGTTAAGAAAAATTAAAGGCGTTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTT
*
10864579 TAAAAAGAAATTATTAAAAGCATTTGTTCTAAAAAAACAT-C-TTCAATAA
323 TAAAAAGAAATTATTGAAAGCATTTGTTCTAAAAAAA-ATGCTTTCAATAA
*
10864628 TTATGTACATAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAACG
1 TTATGTA-GTAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAACG
* * ** * *
10864693 TCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTTTCATTGAAAGATACTTTTAATAATCCCA
65 TCTTAAAATTTGAGTTGTGAAAAATTGAAAGCATTTTTCATTGGAAGACGCCTTTAATAATCTCA
* * *
10864758 AAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTTTCAAAAAAATACATTCAATAATTATGTAC
130 AAAATTTTAAGAAAAAATTATTGAAGGCATTTATTCTCAAAAAAATACCTTCAATAATTATGTAC
* *
10864823 ATAAATTAGAAGAAATTAATGAAGGTATTTTT-TAGAATAAACGCCTTCACTAACCATCTTAAAA
195 ATAAATTAGAAGAAATTAATGAAGGTATTTTTCTAGAATAAA-GCCTTCACTAAACGTCTTAAAA
* * * *
10864887 TATGAGTTAAGAAAAATTAAAAGCATTTTTCACTGGAAGACACATTTAATAATCCCAAAAATTTT
259 TTTGAGTTAAGAAAAATTAAAGGCGTTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTTT
* * * * *
10864952 -AAAAGAAAACTATTGAAGGCGTTTGTTCT-CAGAAAATGCTTTCAATAA
324 AAAAAG-AAATTATTGAAAGCATTTGTTCTAAAAAAAATGCTTTCAATAA
* * *
10865000 TTATGTAGTAAATTAGAAAGAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCAT
1 TTATGTAGTAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAACGT
* * * * *
10865065 TTTAAATTTTAAGTTGTGAAAAATTGAAAGCTTTTTTCATTGGAATACGCCTTTAATAATCTCAA
66 CTTAAAATTTGAGTTGTGAAAAATTGAAAGCATTTTTCATTGGAAGACGCCTTTAATAATCTCAA
* * *
10865130 AAATTTTTA-AAAAAATTATTGAAGGCATTTCTTCTCAAAAAAATACCTTCAATAATTACGTACA
131 AAATTTTAAGAAAAAATTATTGAAGGCATTTATTCTCAAAAAAATACCTTCAATAATTATGTACA
* * * * *
10865194 TAAATTA-AAAAGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAATCGTATTAAAA
196 TAAATTAGAAGA-AATTAATGAAGGTATTTTTCTAGAATAAA-GCCTTCACTAAACGTCTTAAAA
* * * * * * *
10865258 TTTGAGCTATA-AAATATTGAAGGCGTTTTTTACTAGAAGACACCTGTAATAATCCCAAAAGTTT
259 TTTGAGTTA-AGAAAAATTAAAGGCGTTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTT
* * * *
10865322 TAAAAAAAAATTATTGAATGTATTTGTTCT-AAAAAAATGCCTTCA
323 TAAAAAGAAATTATTGAAAGCATTTGTTCTAAAAAAAATGCTTTCA
10865367 CTAACCATCT
Statistics
Matches: 642, Mismatches: 87, Indels: 21
0.86 0.12 0.03
Matches are distributed among these distances:
369 3 0.00
370 77 0.12
371 237 0.37
372 267 0.42
373 58 0.09
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (372 bp):
TTATGTAGTAAATTAGAAAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAAACGT
CTTAAAATTTGAGTTGTGAAAAATTGAAAGCATTTTTCATTGGAAGACGCCTTTAATAATCTCAA
AAATTTTAAGAAAAAATTATTGAAGGCATTTATTCTCAAAAAAATACCTTCAATAATTATGTACA
TAAATTAGAAGAAATTAATGAAGGTATTTTTCTAGAATAAAGCCTTCACTAAACGTCTTAAAATT
TGAGTTAAGAAAAATTAAAGGCGTTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTTTAA
AAAGAAATTATTGAAAGCATTTGTTCTAAAAAAAATGCTTTCAATAA
Found at i:10865433 original size:124 final size:124
Alignment explanation
Indices: 10865200--10865423 Score: 281
Period size: 124 Copynumber: 1.8 Consensus size: 124
10865190 TACATAAATT
* * * *
10865200 AAAAAGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAATCGTATTAAAATTTGAGC
1 AAAAAAAATTAGTGAAGGCATTTTTCTAGAAAAAATGCCTTCACTAACCATATTAAAATTTGAGC
* * * *
10865265 TATAAAATATTGAAGGCGTTTTTTACTAGAAGACACCTGTAATAATCCCAAAAGTTTTA
66 TATAAAACATTGAAGGCATTTTTCACTAAAAGACACCTGTAATAATCCCAAAAGTTTTA
* * * * *
10865324 AAAAAAAATTATTGAATGTATTTGTTCTA-AAAAAATGCCTTCACTAACCATCTTAAAGTTTGAG
1 AAAAAAAATTAGTGAAGGCATTT-TTCTAGAAAAAATGCCTTCACTAACCATATTAAAATTTGAG
* *
10865388 -TAATGAAACATTGAATGCATTTTTCACTAAAAGACA
65 CT-ATAAAACATTGAAGGCATTTTTCACTAAAAGACA
10865424 TCTTCAATAA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
123 1 0.01
124 77 0.93
125 5 0.06
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (124 bp):
AAAAAAAATTAGTGAAGGCATTTTTCTAGAAAAAATGCCTTCACTAACCATATTAAAATTTGAGC
TATAAAACATTGAAGGCATTTTTCACTAAAAGACACCTGTAATAATCCCAAAAGTTTTA
Found at i:10872588 original size:21 final size:21
Alignment explanation
Indices: 10872564--10872615 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
10872554 GAATAGAAGT
*
10872564 ATGCCAAAATTGAGGAAAAAC
1 ATGCCAAAATTGAGCAAAAAC
* * *
10872585 ATGCTAGAATAGAGCAAAAAC
1 ATGCCAAAATTGAGCAAAAAC
10872606 ATG-CAAAATT
1 ATGCCAAAATT
10872616 TTAGCAGTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (21 bp):
ATGCCAAAATTGAGCAAAAAC
Found at i:10873326 original size:34 final size:34
Alignment explanation
Indices: 10873261--10873326 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
10873251 GGTGTGTCAA
* * ** *
10873261 AAATACAAACTCTACTAATATAGTGGTATTTTTC
1 AAATACAAACACCACTAATATAACGGCATTTTTC
*
10873295 AAATACAAACACCACTAATGTAACGGCATTTT
1 AAATACAAACACCACTAATATAACGGCATTTT
10873327 ATAGAAAACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (34 bp):
AAATACAAACACCACTAATATAACGGCATTTTTC
Found at i:10875205 original size:24 final size:24
Alignment explanation
Indices: 10875177--10875233 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
10875167 AGTTTTTTTG
*
10875177 AAATTTTTTATATTTTTAAA-ATATT
1 AAATTTTTTAT-TCTTTAAATAT-TT
*
10875202 -AATTTATTATTCTTTAAATATTT
1 AAATTTTTTATTCTTTAAATATTT
10875225 AAATTTTTT
1 AAATTTTTT
10875234 TAATATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
AAATTTTTTATTCTTTAAATATTT
Found at i:10875220 original size:22 final size:21
Alignment explanation
Indices: 10875183--10875223 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
10875173 TTTGAAATTT
10875183 TTTATATTTTTAAAATATTAA
1 TTTATATTTTTAAAATATTAA
10875204 TTTATTATTCTTT-AAATATT
1 TTTA-TATT-TTTAAAATATT
10875224 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 11 0.61
23 3 0.17
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTATATTTTTAAAATATTAA
Found at i:10875578 original size:32 final size:31
Alignment explanation
Indices: 10875536--10875600 Score: 103
Period size: 32 Copynumber: 2.1 Consensus size: 31
10875526 ATACTAGAAG
* *
10875536 GATTAAATTTCAAATTTCATTTGAGTATGAA
1 GATTAAATTTCAAATTTCATATGAGTATAAA
10875567 GATTAAAATTTCAAATTTCATATGAGTATAAA
1 GATT-AAATTTCAAATTTCATATGAGTATAAA
10875599 GA
1 GA
10875601 CCATATGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 4 0.13
32 27 0.87
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.38
Consensus pattern (31 bp):
GATTAAATTTCAAATTTCATATGAGTATAAA
Found at i:10884869 original size:7 final size:7
Alignment explanation
Indices: 10884859--10884897 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
10884849 CCCACCCCCC
10884859 AAAAAGA
1 AAAAAGA
*
10884866 AAAAAAA
1 AAAAAGA
10884873 AAAAAGA
1 AAAAAGA
*
10884880 AAAAGGA
1 AAAAAGA
*
10884887 AGAAAGA
1 AAAAAGA
10884894 AAAA
1 AAAA
10884898 TGATCACTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:10905696 original size:26 final size:26
Alignment explanation
Indices: 10905658--10905712 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
10905648 CATTATAGTG
10905658 ATTTTTATCAATTATAGTATAAGA-GAT
1 ATTTTTATCAATTAT-G-ATAAGACGAT
*
10905685 ATTTTTGT-AATTATGATAAGACGAT
1 ATTTTTATCAATTATGATAAGACGAT
10905710 ATT
1 ATT
10905713 CTAATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 7 0.27
26 6 0.23
27 7 0.27
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (26 bp):
ATTTTTATCAATTATGATAAGACGAT
Found at i:10906639 original size:25 final size:25
Alignment explanation
Indices: 10906606--10906653 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
10906596 TACTTATGAG
* *
10906606 AAATATATTTTCATAATTATGATAA
1 AAATATATTATAATAATTATGATAA
* *
10906631 AAATGTATTATAATAATTTTGAT
1 AAATATATTATAATAATTATGAT
10906654 TAATAATAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (25 bp):
AAATATATTATAATAATTATGATAA
Found at i:10906812 original size:106 final size:106
Alignment explanation
Indices: 10906695--10906907 Score: 288
Period size: 106 Copynumber: 2.0 Consensus size: 106
10906685 CAATAATAAG
* * *
10906695 AGAAAACATATTTTCGTAATTAT-ATATCAAAAATATTATAATATATAATTATAA-AAAAATGAG
1 AGAAAAAATATTTTCGTAATCATGATAT-AAAAATATTATAATAAATAATTATAAGAAAAAT--G
* * *
10906758 TATTTTTATAATTATGATATAAGA-GCATAATAGTTAATTTAAA
63 TATTTTCATAATTATAATATAAAATGCATAATAGTTAATTTAAA
* * *
10906801 AGAAAAAATATTTTTGTAATCATGATATAAAAGTATTATATTAAATAATTATAAGAAAAATGTAT
1 AGAAAAAATATTTTCGTAATCATGATATAAAAATATTATAATAAATAATTATAAGAAAAATGTAT
*
10906866 TTTCATAATTATAATATAAAATGTATAATAGTTAATTTAAA
66 TTTCATAATTATAATATAAAATGCATAATAGTTAATTTAAA
10906907 A
1 A
10906908 TAAGGATATA
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
105 22 0.23
106 62 0.66
107 10 0.11
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.39
Consensus pattern (106 bp):
AGAAAAAATATTTTCGTAATCATGATATAAAAATATTATAATAAATAATTATAAGAAAAATGTAT
TTTCATAATTATAATATAAAATGCATAATAGTTAATTTAAA
Found at i:10906867 original size:54 final size:55
Alignment explanation
Indices: 10906703--10906900 Score: 169
Period size: 51 Copynumber: 3.7 Consensus size: 55
10906693 AGAGAAAACA
* * * * *
10906703 TATTTTCGTAATTAT-ATATCAAAAATATTATA-ATATATAATTATAA-AAAAATGAG
1 TATTTTCATAATTATGATAT-AAAAGTATAATAGTTAAATAATTATAAGAAAAAT--G
* * * * *
10906758 TATTTTTATAATTATGATATAAGAGCATAATAGTT-AAT--TTAAAAGAAAAA-A
1 TATTTTCATAATTATGATATAAAAGTATAATAGTTAAATAATTATAAGAAAAATG
** * *
10906809 TATTTTTGTAATCATGATATAAAAGTATTATA-TTAAATAATTATAAGAAAAATG
1 TATTTTCATAATTATGATATAAAAGTATAATAGTTAAATAATTATAAGAAAAATG
*
10906863 TATTTTCATAATTATAATATAAAATGTATAATAGTTAA
1 TATTTTCATAATTATGATATAAAA-GTATAATAGTTAA
10906901 TTTAAAATAA
Statistics
Matches: 112, Mismatches: 22, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
50 2 0.02
51 30 0.27
53 16 0.14
54 25 0.22
55 30 0.27
56 9 0.08
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (55 bp):
TATTTTCATAATTATGATATAAAAGTATAATAGTTAAATAATTATAAGAAAAATG
Found at i:10906936 original size:106 final size:104
Alignment explanation
Indices: 10906695--10906939 Score: 260
Period size: 106 Copynumber: 2.3 Consensus size: 104
10906685 CAATAATAAG
* * * * *
10906695 AGAAAACATATTTTCGTAATTATATATCAAAAATATTATAATATATAATTATAAAAAAATGAGTA
1 AGAAAAAATATTATAGTAATAATATAT-AAAAATATTATAATAAATAATTATAAAAAAAT-AGTA
* * *
10906760 TTTTTATAATTATGATATAAGAGCATAATAGTTAATTTAAA
64 TTTTCATAATTATAATATAAAAGCATAATAGTTAATTTAAA
* * * * *
10906801 AGAAAAAATATTTTTGTAATCATGATATAAAAGTATTATATTAAATAATTATAAGAAAAAT-GTA
1 AGAAAAAATATTATAGTAATAAT-ATATAAAAATATTATAATAAATAATTATAA-AAAAATAGTA
*
10906865 TTTTCATAATTATAATATAAAATGTATAATAGTTAATTTAAA
64 TTTTCATAATTATAATATAAAA-GCATAATAGTTAATTTAAA
* * *
10906907 ATAAGGATATATTATAGTAAATAAT-TATAAAAA
1 AGAA-AAAATATTATAGT-AATAATATATAAAAA
10906940 GATAGATATT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
105 22 0.19
106 71 0.61
107 19 0.16
108 5 0.04
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.38
Consensus pattern (104 bp):
AGAAAAAATATTATAGTAATAATATATAAAAATATTATAATAAATAATTATAAAAAAATAGTATT
TTCATAATTATAATATAAAAGCATAATAGTTAATTTAAA
Found at i:10907426 original size:23 final size:23
Alignment explanation
Indices: 10907400--10907453 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
10907390 AAAGATGCAC
*
10907400 AAAAAAATAACAAAAATTGTTTA-
1 AAAAAAATAAAAAAAATT-TTTAT
** *
10907423 AAAATCACAAAAAAAATTTTTAT
1 AAAAAAATAAAAAAAATTTTTAT
10907446 AAAAAAAT
1 AAAAAAAT
10907454 TTTCTCCTAA
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.26
Consensus pattern (23 bp):
AAAAAAATAAAAAAAATTTTTAT
Found at i:10908782 original size:21 final size:21
Alignment explanation
Indices: 10908755--10908804 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
10908745 TCAAAGCTTT
10908755 AATATCAACCTCTACTCTTAC
1 AATATCAACCTCTACTCTTAC
*
10908776 GATATCAACCTCTACTCTTAC
1 AATATCAACCTCTACTCTTAC
10908797 AATATCAA
1 AATATCAA
10908805 GAAGATACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (21 bp):
AATATCAACCTCTACTCTTAC
Found at i:10910114 original size:15 final size:16
Alignment explanation
Indices: 10910089--10910118 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10910079 TAAGTATTTC
10910089 TAAAAATAAGTTTTAT
1 TAAAAATAAGTTTTAT
10910105 TAAAAA-AAGTTTTA
1 TAAAAATAAGTTTTA
10910119 CTTTCACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (16 bp):
TAAAAATAAGTTTTAT
Found at i:10912708 original size:2 final size:2
Alignment explanation
Indices: 10912701--10912730 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10912691 GAAAGAGAAA
10912701 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10912731 CATTGAGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10915535 original size:52 final size:52
Alignment explanation
Indices: 10915446--10915602 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
10915436 TGGACAAGAA
* * * *
10915446 GACTTGCAAAAGAAGAATT-T-CAAGAGAAAGAGAATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAG-GAAA-AGGATTCTTAATAGGCAAGTTT
10915498 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
* * * * * *
10915550 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
10915602 G
1 G
10915603 TATGGTTATA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 85 0.91
53 5 0.05
54 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
Found at i:10920399 original size:15 final size:17
Alignment explanation
Indices: 10920388--10920429 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
10920378 TTTTTATTTA
10920388 TATATATTTTATATAAT
1 TATATATTTTATATAAT
*
10920405 TATATA-TTTAAAT-AT
1 TATATATTTTATATAAT
10920420 T-TATATTTTA
1 TATATATTTTA
10920430 AAAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 7 0.30
16 6 0.26
17 6 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATATTTTATATAAT
Found at i:10920409 original size:8 final size:8
Alignment explanation
Indices: 10920388--10920429 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
10920378 TTTTTATTTA
10920388 TATATATTT
1 TATATA-TT
*
10920397 TATATAAT
1 TATATATT
10920405 TATATATT
1 TATATATT
*
10920413 TAAATATT
1 TATATATT
10920421 TATAT-TT
1 TATATATT
10920428 TA
1 TA
10920430 AAAAAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 4 0.14
8 19 0.66
9 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATATATT
Found at i:10920431 original size:15 final size:15
Alignment explanation
Indices: 10920390--10920431 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
10920380 TTTATTTATA
*
10920390 TATATTTTATATAAT
1 TATATTTTAAATAAT
*
10920405 TATATATTTAAATATT
1 TATAT-TTTAAATAAT
10920421 TATATTTTAAA
1 TATATTTTAAA
10920432 AAAAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATATTTTAAATAAT
Found at i:10920966 original size:10 final size:10
Alignment explanation
Indices: 10920939--10921073 Score: 77
Period size: 10 Copynumber: 13.3 Consensus size: 10
10920929 AAATAATATT
10920939 ATATTAATAA
1 ATATTAATAA
10920949 ATA-TAATATTA
1 ATATTAATA--A
10920960 ATA--AATAA
1 ATATTAATAA
10920968 TATATT-A-AA
1 -ATATTAATAA
10920977 ATATTAATAA
1 ATATTAATAA
*
10920987 ATATTATTAA
1 ATATTAATAA
*
10920997 TTAATTAATATTA
1 AT-ATTAATA--A
10921010 ATA-TAATACA
1 ATATTAATA-A
*
10921020 TTATTAATAA
1 ATATTAATAA
*
10921030 ATATATATTAA
1 ATAT-TAATAA
10921041 TATATTAATAA
1 -ATATTAATAA
*
10921052 ATAAT-ATAA
1 ATATTAATAA
* *
10921061 ACAATAATAA
1 ATATTAATAA
10921071 ATA
1 ATA
10921074 GTTTTGTTTT
Statistics
Matches: 99, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
8 6 0.06
9 19 0.19
10 37 0.37
11 30 0.30
12 5 0.05
13 2 0.02
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATTAATAA
Found at i:10920969 original size:33 final size:33
Alignment explanation
Indices: 10920927--10921054 Score: 108
Period size: 33 Copynumber: 3.9 Consensus size: 33
10920917 AATTTTACTT
10920927 ATAAATAATATTATATTAATA-AATATAATATTA
1 ATAAATAATATTATATTAATATAATA-AATATTA
*
10920960 ATAAATAATA-TAT-TAAAATATTAATAAATATTA
1 ATAAATAATATTATAT-TAATA-TAATAAATATTA
* * * *
10920993 TTAATTAAT-TAATATTAATATAATACATTATTA
1 ATAAATAATATTATATTAATATAATA-AATATTA
10921026 ATAAATATATATTA-A-T-ATATTAATAAATA
1 ATAAATA-ATATTATATTAATA-TAATAAATA
10921055 ATATAAACAA
Statistics
Matches: 76, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
31 1 0.01
32 18 0.24
33 47 0.62
34 8 0.11
35 2 0.03
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (33 bp):
ATAAATAATATTATATTAATATAATAAATATTA
Found at i:10920980 original size:23 final size:24
Alignment explanation
Indices: 10920951--10921051 Score: 95
Period size: 23 Copynumber: 4.2 Consensus size: 24
10920941 ATTAATAAAT
10920951 ATAATATTAATAAATAATATATTA
1 ATAATATTAATAAATAATATATTA
*
10920975 A-AATATTAATAAATATTATTAATTA
1 ATAATATTAATAAATAATA-T-ATTA
10921000 ATTAATATTAATATAATACAT-TATTA
1 A-TAATATTAATA-AATA-ATATATTA
*
10921026 ATAA-A-T-ATATATTAATATATTA
1 ATAATATTAATA-AATAATATATTA
10921048 ATAA
1 ATAA
10921052 ATAATATAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 16
0.78 0.03 0.19
Matches are distributed among these distances:
21 2 0.03
22 16 0.24
23 17 0.25
24 3 0.04
25 8 0.12
26 5 0.07
27 11 0.16
28 4 0.06
29 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAATATTAATAAATAATATATTA
Found at i:10921153 original size:36 final size:35
Alignment explanation
Indices: 10921108--10921177 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
10921098 TTAACATAAT
*
10921108 ATTTTAATATCAA-AATTATTATTAA-AATATAATTA
1 ATTTTAATATCAATAATT-TTAATAATAA-ATAATTA
10921143 ATTTTGAATATCAATAATTTTAATAATAAATAATT
1 ATTTT-AATATCAATAATTTTAATAATAAATAATT
10921178 TCAATATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
35 5 0.16
36 20 0.65
37 6 0.19
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (35 bp):
ATTTTAATATCAATAATTTTAATAATAAATAATTA
Found at i:10921160 original size:16 final size:16
Alignment explanation
Indices: 10921136--10921183 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
10921126 TTATTAAAAT
*
10921136 ATAATTAATTTTGAAT-
1 ATAAATAATTTT-AATA
*
10921152 ATCAATAATTTTAATA
1 ATAAATAATTTTAATA
*
10921168 ATAAATAATTTCAATA
1 ATAAATAATTTTAATA
10921184 TATTTTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (16 bp):
ATAAATAATTTTAATA
Found at i:10921188 original size:26 final size:26
Alignment explanation
Indices: 10921153--10921220 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
10921143 ATTTTGAATA
10921153 TCAATA-ATTTTAATAATAAATAATT
1 TCAATATATTTTAATAATAAATAATT
* *
10921178 TCAATATATTTTAATAATAACTCATT
1 TCAATATATTTTAATAATAAATAATT
**
10921204 TTTA-ATATTTTAATAAT
1 TCAATATATTTTAATAAT
10921221 TATATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 19 0.50
26 19 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (26 bp):
TCAATATATTTTAATAATAAATAATT
Found at i:10925499 original size:34 final size:34
Alignment explanation
Indices: 10925452--10925535 Score: 116
Period size: 34 Copynumber: 2.4 Consensus size: 34
10925442 GGATAATTAT
*
10925452 AATGCTTTCTGAAAATAAATTTTTAATAGAGTTAAA
1 AATG-TTTTTGAAAATAAATTTTTAATAGA-TTAAA
* *
10925488 AA-GTTTTTGAAAATAAATTTTTGATATATTAAA
1 AATGTTTTTGAAAATAAATTTTTAATAGATTAAA
10925521 AATGTTTTTGAAAAT
1 AATGTTTTTGAAAAT
10925536 TCATTTTCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 7 0.16
34 34 0.77
35 1 0.02
36 2 0.05
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (34 bp):
AATGTTTTTGAAAATAAATTTTTAATAGATTAAA
Found at i:10927433 original size:23 final size:22
Alignment explanation
Indices: 10927379--10927434 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
10927369 AATTAAGAGA
* *
10927379 TTAATAATTTAATATGAAATAT
1 TTAATAATTTTATATGAAAAAT
* **
10927401 ATAAGGATTTTATATGAAAAATT
1 TTAATAATTTTATATGAAAAA-T
10927424 TTAATAATTTT
1 TTAATAATTTT
10927435 TTTTATAAGT
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (22 bp):
TTAATAATTTTATATGAAAAAT
Found at i:10928117 original size:605 final size:590
Alignment explanation
Indices: 10927265--10928448 Score: 1754
Period size: 598 Copynumber: 2.0 Consensus size: 590
10927255 TAGGTGATTT
*
10927265 TTATTTAATTTTATAATTAATTTTATTAAAATATAAATTTTAAAATTTTAAAATTCTTTTTAGAT
1 TTATTTAATTTTATAATTAATTTTATTAAAATATAAATTTAAAAATTTTAAAATTCTTTTTAGAT
* * * *
10927330 AAATTTCAATTAGAAAGATTAAGATTTTATAATTTAAAAAATTAAGAGATTAATAATTTAATATG
66 AAATTTCAATTAGAAAGATTAAGAATTTATAATTAAAAAAATGAAGAGATTAATAATTGAATATG
* *
10927395 AAATATATAAGGATTTTATATGAAAAATTTTAATAATTTTTTTTATAAGTTAGATGAAAAATAAT
131 -AATATATAAGGATTTTAGATAAAAAATTTTAATAATTTTTTTTATAAGTTAGATGAAAAATAAT
10927460 TAAAATTAAATATTATATTTTGATTTTGTTATTTATTAATTTATAATTTTATATTTGAAATTTAA
195 TAAAATTAAATATTATATTTTGATTTTGTTATTTATTAATTTATAATTTTATATTTGAAATTTAA
10927525 TAAATTTTTTATTGTTTTGGTA-TTATATTGTTATCAATTCTTTTGCTATTAAATTAATTCTTAT
260 T--A------ATTGTTTTGGTATTTATATTGTTATCAATTCTTTTGCTATTAAATTAATTCTTAT
*
10927589 TAATTTATTTTTATTTTTATGCAATTATTGAATATTCTATTTATTATATAATATATTGAAAGTAA
317 TAATTTATTCTTATTTTTATGCAATTATTGAATATTCTATTTATTATATAATATATTGAAAGTAA
* ** * *
10927654 TTTGTGATAAATTTTTTTTACATCAATTAGTATATCAAAATGATTGAGTTACTTAATAAATTTAG
382 TTTATGATAAAAATTTTTTACATCAATTAGTATATCAAAAAGATTAAGTTACTTAATAAATTTAG
* *
10927719 TGTTTTACGATATATTACTCTTAAGA-T-TAAAAATTAAAAAATTTAATGTAAATTTAATTTTTA
447 TGTTTTACGATATATTACTCTTAAGATTATAAAAATTAAAAAATTTAATGTAAATTCAATTTTCA
* * *
10927782 GTGATGGAATAAATAACATTAATATTTCTAAATATAGGTTTATTTTATTTTTATACAAAATAGCA
512 ATGATGAAATAAATAACATTAATATTTCTAAATATAAGTTTATTTTATTTTTATACAAAATAGCA
10927847 AGCATGTCACTGCG
577 AGCATGTCACTGCG
*
10927861 TTATTTAATTTTGTAATTAATTTTATTAAAATATAAATTTAAAATTTTGTAATTTTAAAAATT-T
1 TTATTTAATTTTATAATTAATTTTATTAAAATATAAATTT-AAA------AATTTT-AAAATTCT
* **
10927925 TTTTGGATAAAATTT-AATTAGAGGGATTGAA-AATTTATAATTGAAAAAAATGAA-AGATTAAT
58 TTTTAGAT-AAATTTCAATTAGAAAGATT-AAGAATTTATAATT-AAAAAAATGAAGAGATTAAT
10927987 AATTGAATATG-ATATATACAGAGATTTTAGATAAAAAATTTTAATAAATTTTTTTGTATAAGTT
120 AATTGAATATGAATATATA-AG-GATTTTAGATAAAAAATTTTAAT-AATTTTTTT-TATAAGTT
*
10928051 AGATGAAAAATAATTAAAATTAAATGTTATATTTTGATTTTGTTATTTATTAATTTATAATTTTA
181 AGATGAAAAATAATTAAAATTAAATATTATATTTTGATTTTGTTATTTATTAATTTATAATTTTA
*
10928116 TATTTGAAATTTAATAATTGTTTTGGTATTTATATTGTTATCAATTCTTTTGCTATTAAATTGAT
246 TATTTGAAATTTAATAATTGTTTTGGTATTTATATTGTTATCAATTCTTTTGCTATTAAATTAAT
* *
10928181 TCTTATTAATTTATTCTTATTTTTGTGTAATTATTGAATATTCTATTTATTATATAATATATTGA
311 TCTTATTAATTTATTCTTATTTTTATGCAATTATTGAATATTCTATTTATTATATAATATATTGA
* * *
10928246 AAGTAATTTATGATAAAAATTTTTTATATCAATTAGTGTATGAAAAAGATTAAGTTACTTAATAA
376 AAGTAATTTATGATAAAAATTTTTTACATCAATTAGTATATCAAAAAGATTAAGTTACTTAATAA
* * *
10928311 ATTTAGTGTTTTACGATCTATTACTTTTAAGATTAAAAACTAAAAATTAAAAAATTTAATGTAGA
441 ATTTAGTGTTTTACGATATATTACTCTTAAGATT----A-TAAAAATTAAAAAATTTAATGTAAA
*
10928376 TTCAATTTTCAATGATGAAATAAGTAACATTAATATTTCTAAATATAAGTTTATTTTATTTTTAT
501 TTCAATTTTCAATGATGAAATAAATAACATTAATATTTCTAAATATAAGTTTATTTTATTTTTAT
10928441 ACAAAATA
566 ACAAAATA
10928449 AAAAATATGC
Statistics
Matches: 532, Mismatches: 33, Indels: 37
0.88 0.05 0.06
Matches are distributed among these distances:
596 39 0.07
597 14 0.03
598 184 0.35
599 1 0.00
601 7 0.01
602 2 0.00
603 75 0.14
604 32 0.06
605 178 0.33
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.48
Consensus pattern (590 bp):
TTATTTAATTTTATAATTAATTTTATTAAAATATAAATTTAAAAATTTTAAAATTCTTTTTAGAT
AAATTTCAATTAGAAAGATTAAGAATTTATAATTAAAAAAATGAAGAGATTAATAATTGAATATG
AATATATAAGGATTTTAGATAAAAAATTTTAATAATTTTTTTTATAAGTTAGATGAAAAATAATT
AAAATTAAATATTATATTTTGATTTTGTTATTTATTAATTTATAATTTTATATTTGAAATTTAAT
AATTGTTTTGGTATTTATATTGTTATCAATTCTTTTGCTATTAAATTAATTCTTATTAATTTATT
CTTATTTTTATGCAATTATTGAATATTCTATTTATTATATAATATATTGAAAGTAATTTATGATA
AAAATTTTTTACATCAATTAGTATATCAAAAAGATTAAGTTACTTAATAAATTTAGTGTTTTACG
ATATATTACTCTTAAGATTATAAAAATTAAAAAATTTAATGTAAATTCAATTTTCAATGATGAAA
TAAATAACATTAATATTTCTAAATATAAGTTTATTTTATTTTTATACAAAATAGCAAGCATGTCA
CTGCG
Found at i:10928196 original size:14 final size:15
Alignment explanation
Indices: 10928169--10928201 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10928159 ATTCTTTTGC
10928169 TATTAAATTGATTCT
1 TATTAAATTGATTCT
*
10928184 TATT-AATTTATTCT
1 TATTAAATTGATTCT
10928198 TATT
1 TATT
10928202 TTTGTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (15 bp):
TATTAAATTGATTCT
Found at i:10931355 original size:6 final size:6
Alignment explanation
Indices: 10931341--10931384 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
10931331 TAAGTCTAAA
* *
10931341 TGATGG TGATAG TGATAG TGATGG TGATGG TGATGG TGATGG TG
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TG
10931385 CAAATTTTGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.20, C:0.00, G:0.45, T:0.34
Consensus pattern (6 bp):
TGATGG
Found at i:10931756 original size:18 final size:18
Alignment explanation
Indices: 10931730--10931802 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
10931720 AGTTATTATC
10931730 CACCACAAATGTATCATT
1 CACCACAAATGTATCATT
*
10931748 CACCTCAAATGTATCATT
1 CACCACAAATGTATCATT
* *
10931766 TACCACAAATGTATC-CT
1 CACCACAAATGTATCATT
*
10931783 CTTCCACAAATGTATCATT
1 C-ACCACAAATGTATCATT
10931802 C
1 C
10931803 TCAAATATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
17 1 0.02
18 43 0.93
19 2 0.04
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (18 bp):
CACCACAAATGTATCATT
Found at i:10932144 original size:25 final size:23
Alignment explanation
Indices: 10932091--10932144 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
10932081 AGCTCAAGCA
*
10932091 AAAATTTTGTTGTTAAATCAAAT
1 AAAATTTTGTTATTAAATCAAAT
* * *
10932114 ACAATTTTTTTATTATAATCTAACT
1 AAAATTTTGTTATTA-AATC-AAAT
10932139 AAAATT
1 AAAATT
10932145 GGGAATATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 12 0.50
24 4 0.17
25 8 0.33
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (23 bp):
AAAATTTTGTTATTAAATCAAAT
Found at i:10934138 original size:34 final size:34
Alignment explanation
Indices: 10934081--10934169 Score: 128
Period size: 34 Copynumber: 2.7 Consensus size: 34
10934071 AAAATGTTGT
*
10934081 TAAATGTCA--AAATGTAATGGCATTTTCTACTA
1 TAAATGTCACTAAATTTAATGGCATTTTCTACTA
* *
10934113 TAAATGTTACTAAATTTAGTGGCATTTTCTACTA
1 TAAATGTCACTAAATTTAATGGCATTTTCTACTA
*
10934147 TAAATGTCGCTAAATTTAATGGC
1 TAAATGTCACTAAATTTAATGGC
10934170 GTTTATGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
32 8 0.16
34 41 0.84
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.39
Consensus pattern (34 bp):
TAAATGTCACTAAATTTAATGGCATTTTCTACTA
Found at i:10934782 original size:3 final size:3
Alignment explanation
Indices: 10934774--10934808 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10934764 AATATACTTC
* *
10934774 ATA ATA ATA ACA ATA ACA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10934809 TTTTTTGCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10938348 original size:3 final size:3
Alignment explanation
Indices: 10938340--10938397 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
10938330 AACAAGTATA
10938340 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10938388 AAT AAT AAT A
1 AAT AAT AAT A
10938398 TGACGAGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10941661 original size:18 final size:19
Alignment explanation
Indices: 10941638--10941685 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
10941628 ATATTTTTAG
10941638 AAATTATAAAAACTT-AAA
1 AAATTATAAAAACTTAAAA
*
10941656 AAATTATTAAAACTTAAAA
1 AAATTATAAAAACTTAAAA
10941675 AAATTA-AAAAA
1 AAATTATAAAAA
10941686 TCTCAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATTATAAAAACTTAAAA
Found at i:10941693 original size:19 final size:19
Alignment explanation
Indices: 10941638--10941693 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
10941628 ATATTTTTAG
*
10941638 AAATTATAAAAACT-TAAA
1 AAATTATAAAAACTCAAAA
* *
10941656 AAATTATTAAAACTTAAAA
1 AAATTATAAAAACTCAAAA
10941675 AAATTA-AAAAATCTCAAAA
1 AAATTATAAAAA-CTCAAAA
10941694 TTTTCATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATTATAAAAACTCAAAA
Found at i:10941705 original size:21 final size:20
Alignment explanation
Indices: 10941679--10941746 Score: 82
Period size: 21 Copynumber: 3.3 Consensus size: 20
10941669 TTAAAAAAAT
10941679 TAAAAAATCTCAAAATTTTCA
1 TAAAAAATCTCAAAATTTT-A
*
10941700 TAAAAAATCTCAAAACTTTA
1 TAAAAAATCTCAAAATTTTA
* * *
10941720 TGAAAAATATAAAAATTTTAA
1 TAAAAAATCTCAAAATTTT-A
10941741 TAAAAA
1 TAAAAA
10941747 TAAAATTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.59, C:0.09, G:0.01, T:0.31
Consensus pattern (20 bp):
TAAAAAATCTCAAAATTTTA
Found at i:10941794 original size:9 final size:9
Alignment explanation
Indices: 10941780--10941886 Score: 51
Period size: 9 Copynumber: 11.4 Consensus size: 9
10941770 AAAGATTCAC
10941780 AAAATTTTA
1 AAAATTTTA
10941789 AAAA--TTA
1 AAAATTTTA
* *
10941796 AAAATCTAA
1 AAAATTTTA
*
10941805 AAAATTTAAAA
1 AAAATTT--TA
* *
10941816 AAAATATATG
1 AAAAT-TTTA
*
10941826 AAAATTTAA
1 AAAATTTTA
10941835 AAAATTTTCTTA
1 AAAA--TT-TTA
10941847 AAAATTTTAA
1 AAAATTTT-A
*
10941857 AAAATTATCA
1 AAAATT-TTA
10941867 AAAA--TTA
1 AAAATTTTA
10941874 AAAATTTTA
1 AAAATTTTA
10941883 AAAA
1 AAAA
10941887 ATCTGAAATA
Statistics
Matches: 75, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
7 13 0.17
9 26 0.35
10 19 0.25
11 10 0.13
12 7 0.09
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.34
Consensus pattern (9 bp):
AAAATTTTA
Found at i:10941820 original size:20 final size:21
Alignment explanation
Indices: 10941795--10941838 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10941785 TTTAAAAATT
*
10941795 AAAAATCTA-AAAAATTTAAA
1 AAAAATATATAAAAATTTAAA
*
10941815 AAAAATATATGAAAATTTAAA
1 AAAAATATATAAAAATTTAAA
10941836 AAA
1 AAA
10941839 TTTTCTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAAATATATAAAAATTTAAA
Found at i:10941888 original size:10 final size:10
Alignment explanation
Indices: 10941802--10941888 Score: 56
Period size: 10 Copynumber: 8.8 Consensus size: 10
10941792 ATTAAAAATC
10941802 TAAAAAATTT
1 TAAAAAATTT
* * *
10941812 AAAAAAAATA
1 TAAAAAATTT
*
10941822 TATGAAAA-TT
1 TA-AAAAATTT
10941832 TAAAAAATTTT
1 TAAAAAA-TTT
*
10941843 CTTAAAAATTT
1 -TAAAAAATTT
*
10941854 TAAAAAATTA
1 TAAAAAATTT
*
10941864 TCAAAAA--T
1 TAAAAAATTT
10941872 T-AAAAATTT
1 TAAAAAATTT
10941881 TAAAAAAT
1 TAAAAAAT
10941889 CTGAAATATG
Statistics
Matches: 58, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
7 5 0.09
8 1 0.02
9 6 0.10
10 31 0.53
11 9 0.16
12 6 0.10
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.34
Consensus pattern (10 bp):
TAAAAAATTT
Found at i:10942029 original size:49 final size:49
Alignment explanation
Indices: 10941925--10942031 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 49
10941915 ATTCTGAAAT
10941925 AAAAAATTAAAAATTAAAATTAATAAAATTAAAAAATTTTATAAAATATA
1 AAAAAATTAAAAATTAAAATTAATAAAATTAAAAAATTTTAT-AAATATA
* * * *
10941975 TAAAAATTAAAATTGTAACATTCAA-AAAA-TAAAAAATTTTCAT-AATTTA
1 AAAAAATTAAAAAT-TAAAATT-AATAAAATTAAAAAATTTT-ATAAATATA
10942024 AAAAAATT
1 AAAAAATT
10942032 TATTTTTATT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
49 12 0.24
50 23 0.47
51 12 0.24
52 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.33
Consensus pattern (49 bp):
AAAAAATTAAAAATTAAAATTAATAAAATTAAAAAATTTTATAAATATA
Found at i:10942073 original size:27 final size:27
Alignment explanation
Indices: 10942028--10942080 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
10942018 AATTTAAAAA
*
10942028 AATTTATTTTTATTATTTTTAATTTTT
1 AATTTATTTTTATTATTTTGAATTTTT
*
10942055 AATTTTTTTTGTATT-TTTTGAATTTT
1 AATTTATTTT-TATTATTTTGAATTTT
10942081 AAGAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (27 bp):
AATTTATTTTTATTATTTTGAATTTTT
Found at i:10942097 original size:17 final size:18
Alignment explanation
Indices: 10942077--10942127 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 18
10942067 ATTTTTTGAA
10942077 TTTTAAGAAAATTTT-AT
1 TTTTAAGAAAATTTTCAT
**
10942094 TTTTATTAAAATTTTCAT
1 TTTTAAGAAAATTTTCAT
*
10942112 TTTT--TAAAATTTTCAT
1 TTTTAAGAAAATTTTCAT
10942128 AAAATTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 12 0.39
17 13 0.42
18 6 0.19
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTTAAGAAAATTTTCAT
Found at i:10942120 original size:16 final size:17
Alignment explanation
Indices: 10942084--10942127 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
10942074 GAATTTTAAG
10942084 AAAATTTT-ATTTTTATT
1 AAAATTTTCA-TTTTATT
10942101 AAAATTTTCATTTT-TT
1 AAAATTTTCATTTTATT
10942117 AAAATTTTCAT
1 AAAATTTTCAT
10942128 AAAATTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.50
17 12 0.46
18 1 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
AAAATTTTCATTTTATT
Found at i:10942136 original size:28 final size:29
Alignment explanation
Indices: 10942100--10942154 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
10942090 TTATTTTTAT
10942100 TAAAATTTT-CATTTTT-TAAAATTTTCA
1 TAAAATTTTGCATTTTTATAAAATTTTCA
* *
10942127 TAAAATTTTTGGATTTTTATAAATTTTT
1 TAAAA-TTTTGCATTTTTATAAAATTTT
10942155 AAATTTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 5 0.22
28 4 0.17
29 6 0.26
30 8 0.35
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (29 bp):
TAAAATTTTGCATTTTTATAAAATTTTCA
Found at i:10942160 original size:18 final size:19
Alignment explanation
Indices: 10942112--10942161 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
10942102 AAATTTTCAT
10942112 TTTTTAAAATTTTCATAAAA
1 TTTTT-AAATTTTCATAAAA
** *
10942132 TTTTTGGATTTTTAT-AAA
1 TTTTTAAATTTTCATAAAA
10942150 TTTTTAAATTTT
1 TTTTTAAATTTT
10942162 AAGATTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 13 0.52
19 7 0.28
20 5 0.20
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTTAAATTTTCATAAAA
Found at i:10942167 original size:26 final size:26
Alignment explanation
Indices: 10942112--10942232 Score: 74
Period size: 26 Copynumber: 4.5 Consensus size: 26
10942102 AAATTTTCAT
**
10942112 TTTTTA-AAATTTTCATAAAATTTTTGGA
1 TTTTTATAAATTTT--T-AAATTTTAAGA
10942140 TTTTTATAAATTTTTAAATTTTAAGA
1 TTTTTATAAATTTTTAAATTTTAAGA
* *
10942166 TTTTT-TGAAA-TTTTAAGTTTTCATATA
1 TTTTTAT-AAATTTTTAAATTTT-A-AGA
*
10942193 TTTTTA-AAATTTTTTTAAATATTTCAG-
1 TTTTTATAAA--TTTTTAAAT-TTTAAGA
10942220 TTTTT-TAAATTTT
1 TTTTTATAAATTTT
10942233 AAAAAAATAT
Statistics
Matches: 76, Mismatches: 7, Indels: 23
0.72 0.07 0.22
Matches are distributed among these distances:
25 15 0.20
26 21 0.28
27 16 0.21
28 7 0.09
29 14 0.18
30 3 0.04
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (26 bp):
TTTTTATAAATTTTTAAATTTTAAGA
Found at i:10942171 original size:18 final size:17
Alignment explanation
Indices: 10942150--10942234 Score: 73
Period size: 18 Copynumber: 4.8 Consensus size: 17
10942140 TTTTTATAAA
10942150 TTTTTAAATTTTAAGATT
1 TTTTTAAATTTTAAG-TT
*
10942168 TTTTGAAATTTTAAGTT
1 TTTTTAAATTTTAAGTT
** * *
10942185 TTCATATATTTTTAAAATT
1 TTTTTA-AATTTT-AAGTT
*
10942204 TTTTTAAATATTTCAG-T
1 TTTTTAAAT-TTTAAGTT
10942221 TTTTTAAATTTTAA
1 TTTTTAAATTTTAA
10942235 AAAAATATTT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
16 4 0.08
17 15 0.29
18 22 0.42
19 11 0.21
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTTTAAATTTTAAGTT
Found at i:10942232 original size:36 final size:35
Alignment explanation
Indices: 10942102--10942237 Score: 98
Period size: 36 Copynumber: 3.8 Consensus size: 35
10942092 ATTTTTATTA
*
10942102 AAATTTTCA-TTTTTTAAAATTTTCATAAAA-TTTTTG
1 AAATTTTAAGTTTTTT-AAATTTT--TAAAATTTTTTG
* * ** *
10942138 GATTTTTATAAATTTTTAAA-TTTTAAGATTTTTTG
1 AAATTTTA-AGTTTTTTAAATTTTTAAAATTTTTTG
* * *
10942173 AAATTTTAAGTTTTCATATATTTTTAAAATTTTTTT
1 AAATTTTAAGTTTT-TTAAATTTTTAAAATTTTTTG
* *
10942209 AAATATTTCAGTTTTTTAAATTTTAAAAA
1 AAAT-TTTAAGTTTTTTAAATTTTTAAAA
10942238 AATATTTCAT
Statistics
Matches: 77, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
34 8 0.10
35 15 0.19
36 36 0.47
37 13 0.17
38 5 0.06
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (35 bp):
AAATTTTAAGTTTTTTAAATTTTTAAAATTTTTTG
Found at i:10942271 original size:20 final size:21
Alignment explanation
Indices: 10942229--10942272 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10942219 GTTTTTTAAA
* *
10942229 TTTTAAAAAAATATTTCATAT
1 TTTTAAAAAAATATTTAAAAT
10942250 TTTTAAAAAAAT-TTTAAAAT
1 TTTTAAAAAAATATTTAAAAT
10942270 TTT
1 TTT
10942273 CTTTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTAAAAAAATATTTAAAAT
Found at i:10944054 original size:23 final size:23
Alignment explanation
Indices: 10944028--10944072 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
10944018 TGATTTGTTG
*
10944028 ATAAAATATTAAATTTTTAATTA
1 ATAAAATATTAAACTTTTAATTA
*
10944051 ATAAAGTATTAAACTTTTAATT
1 ATAAAATATTAAACTTTTAATT
10944073 TAAGTGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATAAAATATTAAACTTTTAATTA
Found at i:10954238 original size:32 final size:32
Alignment explanation
Indices: 10954178--10954239 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
10954168 TGATGATTAG
* *
10954178 TATATTTTTATTATATAAAATATTAAAATTTA
1 TATATTTATATTATATAAAATATAAAAATTTA
***
10954210 TATATTTATATTATATTTTATATAAAAATT
1 TATATTTATATTATATAAAATATAAAAATT
10954240 ATGTGTTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (32 bp):
TATATTTATATTATATAAAATATAAAAATTTA
Found at i:10954305 original size:24 final size:23
Alignment explanation
Indices: 10954278--10954340 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
10954268 TATAAAAATT
*
10954278 TTATTTTATTAAATTTATATATAA
1 TTATTTTATTAAATTT-TAAATAA
*
10954302 TTA--TTATTATAATTTTAAATTA
1 TTATTTTATTA-AATTTTAAATAA
*
10954324 -TATTTTATTAATTTTTA
1 TTATTTTATTAAATTTTA
10954341 TTTTTATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
21 2 0.06
22 17 0.52
23 11 0.33
24 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTTTATTAAATTTTAAATAA
Found at i:10954323 original size:13 final size:12
Alignment explanation
Indices: 10954307--10954388 Score: 58
Period size: 13 Copynumber: 6.4 Consensus size: 12
10954297 TATAATTATT
10954307 ATTATAATTTTAA
1 ATTAT-ATTTTAA
10954320 ATTATATTTTATTA
1 ATTATATTTTA--A
* *
10954334 ATTTTTATTTTTAT
1 A-TTATA-TTTTAA
*
10954348 ATTATA-TTTAT
1 ATTATATTTTAA
* *
10954359 ATTTTATTATTAT
1 ATTATATT-TTAA
10954372 ATTATATTTTAA
1 ATTATATTTTAA
10954384 ATTAT
1 ATTAT
10954389 CTGATTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
11 10 0.18
12 15 0.26
13 20 0.35
14 3 0.05
15 4 0.07
16 5 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTATATTTTAA
Found at i:10954363 original size:18 final size:18
Alignment explanation
Indices: 10954321--10954388 Score: 79
Period size: 17 Copynumber: 3.9 Consensus size: 18
10954311 TAATTTTAAA
* *
10954321 TTATATTTTAT-TAATTT
1 TTATATTTTATATTATAT
10954338 TTAT-TTTTATATTATAT
1 TTATATTTTATATTATAT
10954355 TTATATTTTATTATTATA-
1 TTATATTTTA-TATTATAT
*
10954373 TTATATTTTAAATTAT
1 TTATATTTTATATTAT
10954389 CTGATTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
16 6 0.13
17 17 0.38
18 15 0.33
19 7 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATATTTTATATTATAT
Found at i:10954371 original size:24 final size:23
Alignment explanation
Indices: 10954320--10954380 Score: 86
Period size: 24 Copynumber: 2.6 Consensus size: 23
10954310 ATAATTTTAA
* *
10954320 ATTATATTTTATTAATTTTTATT
1 ATTATATTATATTTATTTTTATT
*
10954343 TTTATATTATATTTATATTTTATT
1 ATTATATTATATTTAT-TTTTATT
10954367 ATTATATTATATTT
1 ATTATATTATATTT
10954381 TAAATTATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTATATTATATTTATTTTTATT
Found at i:10954993 original size:6 final size:6
Alignment explanation
Indices: 10954969--10955014 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 6
10954959 GGCCCTGACC
*
10954969 CCAAAG CCGAAA- ACAAAG CCAAAG CCAAAG CCAAAG CCAAAG CCAA
1 CCAAAG CC-AAAG CCAAAG CCAAAG CCAAAG CCAAAG CCAAAG CCAA
10955015 GGCCTCTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 3 0.08
6 30 0.83
7 3 0.08
ACGTcount: A:0.52, C:0.33, G:0.15, T:0.00
Consensus pattern (6 bp):
CCAAAG
Found at i:10971218 original size:11 final size:11
Alignment explanation
Indices: 10971202--10971226 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10971192 ATAGATGATC
10971202 AATTACACATA
1 AATTACACATA
10971213 AATTACACATA
1 AATTACACATA
10971224 AAT
1 AAT
10971227 AAAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTACACATA
Found at i:10971843 original size:27 final size:27
Alignment explanation
Indices: 10971794--10971857 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
10971784 AATAAAATAG
* * *
10971794 AAAAAAA-TGAAAGTGGGTTTCATGAA-
1 AAAAAAATTAAAAGTGGATCTCAT-AAC
10971820 AAAAAAATTAAAAGTGGATCTCATAAC
1 AAAAAAATTAAAAGTGGATCTCATAAC
*
10971847 ATAAAAATTAA
1 AAAAAAATTAA
10971858 TAAAAATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.56, C:0.06, G:0.14, T:0.23
Consensus pattern (27 bp):
AAAAAAATTAAAAGTGGATCTCATAAC
Found at i:10976807 original size:19 final size:19
Alignment explanation
Indices: 10976785--10976851 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 19
10976775 TCACCCAAAA
10976785 CCTAAACCACTTCTTAAAC
1 CCTAAACCACTTCTTAAAC
* *
10976804 CCTAAATCACTT-TCAAACC
1 CCTAAACCACTTCTTAAA-C
10976823 CCTAAACCACATTC-TAAAC
1 CCTAAACCAC-TTCTTAAAC
*
10976842 CCTAAGCCAC
1 CCTAAACCAC
10976852 CTTCCAAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 4 0.10
19 31 0.77
20 5 0.12
ACGTcount: A:0.37, C:0.39, G:0.01, T:0.22
Consensus pattern (19 bp):
CCTAAACCACTTCTTAAAC
Found at i:10977834 original size:8 final size:9
Alignment explanation
Indices: 10977812--10977854 Score: 61
Period size: 10 Copynumber: 4.7 Consensus size: 9
10977802 TTTTCAAAAA
10977812 AAAAAAGATG
1 AAAAAA-ATG
10977822 AAAAAAATG
1 AAAAAAATG
10977831 -AAAAAATG
1 AAAAAAATG
10977839 AAAAAAATG
1 AAAAAAATG
10977848 CAAAAAA
1 -AAAAAA
10977855 GTGTGTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.26
9 11 0.35
10 12 0.39
ACGTcount: A:0.77, C:0.02, G:0.12, T:0.09
Consensus pattern (9 bp):
AAAAAAATG
Found at i:10977834 original size:17 final size:18
Alignment explanation
Indices: 10977813--10977854 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 18
10977803 TTTCAAAAAA
10977813 AAAAAGATGAAAAAAATG-
1 AAAAA-ATGAAAAAAATGC
10977831 AAAAAATGAAAAAAATGC
1 AAAAAATGAAAAAAATGC
10977849 AAAAAA
1 AAAAAA
10977855 GTGTGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAAAATGAAAAAAATGC
Found at i:10977907 original size:26 final size:26
Alignment explanation
Indices: 10977869--10977922 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
10977859 GTGTTTTACA
10977869 TTTCATACATATTTTAATTATCTCAT
1 TTTCATACATATTTTAATTATCTCAT
* * *
10977895 TTTCATGCTTATTTTAATTATGTCAT
1 TTTCATACATATTTTAATTATCTCAT
10977921 TT
1 TT
10977923 ATTATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTCATACATATTTTAATTATCTCAT
Found at i:10978462 original size:13 final size:13
Alignment explanation
Indices: 10978444--10978487 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
10978434 AAATCATTAG
*
10978444 AAATGATAATAAA
1 AAATGAAAATAAA
10978457 AAATGAAAATGAAAA
1 AAATGAAAAT--AAA
*
10978472 AAATGAAAAGAAA
1 AAATGAAAATAAA
10978485 AAA
1 AAA
10978488 AATCAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 15 0.56
15 12 0.44
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (13 bp):
AAATGAAAATAAA
Found at i:10978490 original size:15 final size:15
Alignment explanation
Indices: 10978454--10978488 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
10978444 AAATGATAAT
10978454 AAAAAATGAAAATGA
1 AAAAAATGAAAATGA
10978469 AAAAAATGAAAA-GA
1 AAAAAATGAAAATGA
10978483 AAAAAA
1 AAAAAA
10978489 ATCAAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (15 bp):
AAAAAATGAAAATGA
Found at i:10983280 original size:135 final size:135
Alignment explanation
Indices: 10983038--10983308 Score: 542
Period size: 135 Copynumber: 2.0 Consensus size: 135
10983028 TTCATGATTT
10983038 TAAAAAATATTTAGAAAATTGAAGCACACCAACTTTAAACTAACAATTTTCTTTTTGGATACCAT
1 TAAAAAATATTTAGAAAATTGAAGCACACCAACTTTAAACTAACAATTTTCTTTTTGGATACCAT
10983103 TTATGAATTAAATTGAATAAAAATAATAGGGTCAAAAACTATATATGCAAAAATGTGCTCCTCCA
66 TTATGAATTAAATTGAATAAAAATAATAGGGTCAAAAACTATATATGCAAAAATGTGCTCCTCCA
10983168 TAACA
131 TAACA
10983173 TAAAAAATATTTAGAAAATTGAAGCACACCAACTTTAAACTAACAATTTTCTTTTTGGATACCAT
1 TAAAAAATATTTAGAAAATTGAAGCACACCAACTTTAAACTAACAATTTTCTTTTTGGATACCAT
10983238 TTATGAATTAAATTGAATAAAAATAATAGGGTCAAAAACTATATATGCAAAAATGTGCTCCTCCA
66 TTATGAATTAAATTGAATAAAAATAATAGGGTCAAAAACTATATATGCAAAAATGTGCTCCTCCA
10983303 TAACA
131 TAACA
10983308 T
1 T
10983309 GTTGATGGGT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (135 bp):
TAAAAAATATTTAGAAAATTGAAGCACACCAACTTTAAACTAACAATTTTCTTTTTGGATACCAT
TTATGAATTAAATTGAATAAAAATAATAGGGTCAAAAACTATATATGCAAAAATGTGCTCCTCCA
TAACA
Found at i:10987628 original size:26 final size:26
Alignment explanation
Indices: 10987558--10987739 Score: 95
Period size: 26 Copynumber: 6.8 Consensus size: 26
10987548 TTTTATTTGA
* * * *
10987558 GTATTGCTCATTGATTTAAAGCTTGT
1 GTATTGCTTACTGATTTAGAGCTTAT
10987584 GTATTG-TTCACTGATTTAGAGCTTAT
1 GTATTGCTT-ACTGATTTAGAGCTTAT
*
10987610 GTATTGCTTACTGACTTAGA-CTTAAACT
1 GTATTGCTTACTGATTTAGAGCTT--A-T
* * * **
10987638 TTATGAAGCTT-GT-ATTTAGATTTTATTT
1 GTAT--TGCTTACTGATTTAGAGCTTA--T
* * * *
10987666 GAGTATTGCTCATTGATTTAAAGCTTGT
1 --GTATTGCTTACTGATTTAGAGCTTAT
10987694 GTATTG-TTCACTGATTTAGAGCTTAT
1 GTATTGCTT-ACTGATTTAGAGCTTAT
*
10987720 GTATTGCTTACTGACTTAGA
1 GTATTGCTTACTGATTTAGA
10987740 CTTTATGAAG
Statistics
Matches: 117, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
25 5 0.04
26 72 0.62
27 6 0.05
28 15 0.13
29 4 0.03
30 15 0.13
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (26 bp):
GTATTGCTTACTGATTTAGAGCTTAT
Found at i:10987705 original size:110 final size:110
Alignment explanation
Indices: 10987512--10987742 Score: 462
Period size: 110 Copynumber: 2.1 Consensus size: 110
10987502 TGTTGTTTGA
10987512 GACTTAGACTTAAACTTTATGAAGCTTGTATTTAGATTTTATTTGAGTATTGCTCATTGATTTAA
1 GACTTAGACTTAAACTTTATGAAGCTTGTATTTAGATTTTATTTGAGTATTGCTCATTGATTTAA
10987577 AGCTTGTGTATTGTTCACTGATTTAGAGCTTATGTATTGCTTACT
66 AGCTTGTGTATTGTTCACTGATTTAGAGCTTATGTATTGCTTACT
10987622 GACTTAGACTTAAACTTTATGAAGCTTGTATTTAGATTTTATTTGAGTATTGCTCATTGATTTAA
1 GACTTAGACTTAAACTTTATGAAGCTTGTATTTAGATTTTATTTGAGTATTGCTCATTGATTTAA
10987687 AGCTTGTGTATTGTTCACTGATTTAGAGCTTATGTATTGCTTACT
66 AGCTTGTGTATTGTTCACTGATTTAGAGCTTATGTATTGCTTACT
10987732 GACTTAGACTT
1 GACTTAGACTT
10987743 TATGAAGCTT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 121 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (110 bp):
GACTTAGACTTAAACTTTATGAAGCTTGTATTTAGATTTTATTTGAGTATTGCTCATTGATTTAA
AGCTTGTGTATTGTTCACTGATTTAGAGCTTATGTATTGCTTACT
Found at i:10993627 original size:159 final size:156
Alignment explanation
Indices: 10992259--10994770 Score: 1508
Period size: 159 Copynumber: 15.8 Consensus size: 156
10992249 TGCTAACAAA
* * ** *
10992259 CTATTTTGCTTGGTACTTTGTGAAAAAAACTTATACTTTTACAATAGA-AGAAGTTTGAACGACT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTATGATAGAGA-AAGTTTGAATGA-T
* * * * **
10992323 TGAAGGACCAACTTTAAAACCAAA-AACATGAAAGGCAGAAATGTTTTTTTTTTTGGTAAGTAAA
63 TGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATG---CTTTTTTTGGTAAACAAA
* * *
10992387 AGCAACAATATCTTTTATCCCAATGGAAACTAT
125 AGCAACAATATCGTGTATCCTAATGG-AACTAT
* * ** *
10992420 CTATTTTGCTTGGCAGTTTGTGAAAAGAAGTTATACTTTTACGAT-GA-AAGTAGTTTGAATGAG
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTATGATAGAGAA--AGTTTGAATGA-
** * * * * ** **
10992483 TTGAAGGGTCACCTTTGAAACCAAATAAAATGAAAGCGAGAAATTCTTTTTTCAGTAAATGAAAG
62 TTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAG
** *
10992548 CAACAATATTTTGTATCCCTACA-AGAACTAT
127 CAACAATATCGTGTAT-CCTA-ATGGAACTAT
* * * * ** * *
10992579 TTATTTTGCTTGGTTCTTCATGT-AAAA-AGCATAGATTTTTACAATGGAGTAAGTTTGGCCAAA
1 CTATTTTGCTTGGTACTT--TGTGAAAAGAACATATA-TTTTATGATAGAGAAAGTTT-G---AA
* *
10992642 TG-TT-ATA--ACCAACTTTGAAACCAAAAAAAAAAAAAAAATGAAAGGGAGAAATGCTATTTTT
59 TGATTGA-AGGACCAACTTTGAAACC--------AAACAAAATGAAAGGGAGAAATGCTTTTTTT
* * * *
10992703 GGTAAACAAAAGCAACAATATCATATATCCTAATGGTAACAAA
115 GGTAAACAAAAGCAACAATATCGTGTATCCTAATGG-AACTAT
* * * * *
10992746 CTATTTTGCTTGGTATTTTTTGAAAA-AA-ATTACACTTTTATGAT-GATAAAATTTGAATGAGT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACA-TATA-TTTTATGATAGAGAAAGTTTGAATGA-T
* * * **
10992808 TGAAGGACGAACTTTGAAACCAAACAAAATGAAAGGAAGAAATGCTTTTTTGGGTAAATGAAAGC
63 TGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGC
* * *
10992873 AACAATATCCTTTATCCCAATGAGAACTAT
128 AACAATATCGTGTATCCTAATG-GAACTAT
* * * * * *
10992903 CTA-CTTGCTTGGTACTTTGTGAAAAGAACATAAAATCTTTATGCTAGAGTAAGTCTGATTGAAT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACAT-ATAT-TTTATGATAGAGAAAGTTTGAATG-AT
* * * * * * * ** * *
10992967 GGAAAGACCAACTCTAAAACCAAACAAATTGAAAGAGACAAACACTTTTTGTTGGCAATCAAAAG
63 TGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTT-TTGGTAAACAAAAG
* * * *
10993032 CAACGATATTGTGTATCCTAATGGTAACAAG
127 CAACAATATCGTGTATCCTAATGG-AACTAT
* * * *
10993063 CT-TTTTGGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGGTAGAGGAAGTTTTAATGAAT
1 CTATTTT-GCTTGGTACTTTGTGAAAAGAACATATA-TTTTATGATAGAGAAAGTTTGAATG-AT
* * * * *
10993127 T-ATATGACCAATTTTGAAACCAAACAAAAT----GGGAGAAATGCTTTCTTTAGTAAACGAAAG
63 TGA-AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAG
* * *
10993187 TAATAATATCTTGTATCCTAATAGGAACTAT
127 CAACAATATCGTGTATCCTAAT-GGAACTAT
* * * *
10993218 CTATTTTGCATGGTACTTTGTGAAAATG-ACTTATATTTTTACGATGGAGAAAGTTTGAATGAGT
1 CTATTTTGCTTGGTACTTTGTGAAAA-GAACATATA-TTTTATGATAGAGAAAGTTTGAATGA-T
* * * * * * **
10993282 TAAAAGATCAACTTTGAAACCAGATAAAATGAATGGGAGAAATTTTTTTTTTTGGTAAACAAAAG
63 TGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAA-TGCTTTTTTTGGTAAACAAAAG
* * ** * *
10993347 CAACAATATTGTGTATCCCAATGCTCACAAA
127 CAACAATATCGTGTATCCTAATG-GAACTAT
* * * ** * *
10993378 CTATTTTGCTTTGTACTTTATGAAAAGAACTTATATTTTTACAATGGAGGAAGTTTGAATGAGTT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTATGATAGAGAAAGTTTGAATGA-TT
* * *
10993443 GAATGG-TCAACTTTGAAACCAAACAAAATAAAAGGGAGAAATGATTTTTTTTGGTAAACAAAAG
64 GAA-GGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATG-CTTTTTTTGGTAAACAAAAG
* * *
10993507 CCACAATATCCTATATCCTAATGGAACTAT
127 CAACAATATCGTGTATCCTAATGGAACTAT
* * * * **
10993537 CTATTTTGCTTGGTAATTTCTGAAAAGAACATAGATTTTAATGATAGAGAAAATTTGACCGATTG
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATATTTT-ATGATAGAGAAAGTTTGAATGATT-
* * * * * * * * *
10993602 GATGGATCAATTTTCAAACTC-AACAAAATGAATGGGAAAAATACTTTTGTTAGTAAACAAAAGC
64 GAAGGACCAACTTTGAAAC-CAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGC
* * * *
10993666 AACAATATCATGTATCCCAATAGTAA-TAA
128 AACAATATCGTGTATCCTAAT-GGAACTAT
* * * * * ** * *
10993695 ATATTATT-CTTGGTATTTTTTGAAAAAAAAAATTATACTTTTACAATGGATG-AAGTTTCAATG
1 CTATT-TTGCTTGGTACTTTGTG-AAAAGAACA-TATA-TTTTATGATAGA-GAAAGTTTGAATG
* * * *
10993758 AATTGAAGGACCAACTTTGAAACCTAACAAAATGAATGGGAGAAATGCTTTTTTGGGTAAACAAT
61 -ATTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAA
* *
10993823 AGCAACAATATCGTGTATCCTAATGGTAACAAA
125 AGCAACAATATCGTGTATCCTAATGG-AACTAT
* * * * * *
10993856 CTATTTTACTTGGTACTTTCTAAAAAGAACATATATTTTTACT-ATGGA-AGAAGTTTAAACGAG
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTA-TGATAGAGA-AAGTTTGAATGA-
* * ** *
10993919 TTAAAGGACAAACTTCAAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAG
62 TTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAG
* * *
10993984 CAACAATATCTTGTAACCTAAAGAGAACTAT
127 CAACAATATCGTGTATCCTAATG-GAACTAT
* * ** *
10994015 C-ATTTTTCTTGGTACTTTGTGAAAAAGAATATAGCT-TTTTACAATAGAGTAAGTTTG-ATCGA
1 CTATTTTGCTTGGTACTTTGTG-AAAAGAACATA--TATTTTATGATAGAGAAAGTTTGAAT-G-
* * * *
10994077 ATGGAAGGACCAACTTTGAAACCAAACAAAATGAAAGTGAGAAATGCATTTTTTGCTAAACAAAA
61 ATTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAA
* * * * *
10994142 GTAACAATATCTTTTATCCCAATAAGAACTAT
126 GCAACAATATCGTGTATCCTAAT-GGAACTAT
* * * *
10994174 CTATTTTGCTCGGTACTTTGTG-AAAGAA-ATTATACTTTTATGATGGGGGAAGTTTGAA-GAAG
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACA-TATA-TTTTATGATAGAGAAAGTTTGAATG-A-
* * *** * **
10994236 TT-AGAGAACCAATTTTGAAACTTGACAAAATGAAAGGGAGAAATGATTTTTTTGGTAAATGAAA
62 TTGA-AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAA
* ** * * * * **
10994300 GTAGTACTATCTTGTACCCCAACAAGAACTAT
126 GCAACAATATCGTGTATCCTAA-TGGAACTAT
** ** ** * * * *
10994332 CTATTTTGCTTCATACTTTGTGAAAAGAATTTATACTTTTACAATAAAGTAAGTTTAAACGAGTT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTATGATAGAGAAAGTTTGAATGA-TT
* * * * * * *
10994397 AAAGGACCAACTTTGAAACAAAAAAAAAAAAGAATGGGAGAAATGCTTTTCTTGGTAAATAAAAG
64 GAAGGACCAACTTTGAAAC--CAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAG
* * * * *
10994462 CAAGAATATCTTGTATCCCACTGAGAAATAT
127 CAACAATATCGTGTATCCTAATG-GAACTAT
* * * * * ** * * *
10994493 CTATTTTGCTTGACT-CTTTATGTAAAGAATATAGATTTATACAATGGAGCAAGTTTGACCA-AA
1 CTATTTTGCTTG-GTACTTTGTGAAAAGAACATATATTT-TATGATAGAGAAAGTTTGA--ATGA
* * * * * ** * *
10994556 TAGAATGATCAACTTTAAAACCAAATAAAATGAGTGGGAGAAATGCCTTTTGTGGTAAACAAAAG
62 TTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAG
** * * ** *
10994621 CAGTAGTAT-ATGTATCCCCATGGTAACAAAT
127 CAACAATATCGTGTATCCTAATGG-AAC-TAT
* * **
10994652 -TATTTTGTTTGGTACTTTGTGAAAAGAACTTATAATTTTACAAT-GAAGAAAGTTTGAATGAGT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATAT-ATTTTATGATAG-AGAAAGTTTGAATGA-T
* * * * *
10994715 TAAAAGACCAATTTTGAAA-TAAACAAAATGAAAGGGACAAATGCTTTTTTTGGTAA
63 TGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAA
10994771 TGTAAGCCGC
Statistics
Matches: 1840, Mismatches: 399, Indels: 228
0.75 0.16 0.09
Matches are distributed among these distances:
154 1 0.00
155 102 0.06
156 40 0.02
157 107 0.06
158 275 0.15
159 541 0.29
160 386 0.21
161 249 0.14
162 17 0.01
163 8 0.00
164 2 0.00
165 25 0.01
166 20 0.01
167 67 0.04
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.32
Consensus pattern (156 bp):
CTATTTTGCTTGGTACTTTGTGAAAAGAACATATATTTTATGATAGAGAAAGTTTGAATGATTGA
AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAAC
AATATCGTGTATCCTAATGGAACTAT
Found at i:10993739 original size:319 final size:315
Alignment explanation
Indices: 10992259--10994770 Score: 1425
Period size: 319 Copynumber: 7.9 Consensus size: 315
10992249 TGCTAACAAA
* * *
10992259 CTATTTTGCTTGGTACTTTGTGAAAAAAACTTATACTTTTACA--ATAGA-AGAAGTTTGAACGA
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTA-ATGATAGAGA-AAATTTGAACGA
* * * * * * ** ** * **
10992321 CTTGAAGGACCAACTTTAAAACCAAA-AACATGAAAGGCAGAAATGTTTTTTTTTTTGGTAAGTA
63 GTTAAAAGATCAACTTTCAAACCAAACAAAATGAAAGG--GAAA-AATACTTTTGTTGGTAAACA
* * * * * ** * * * *
10992385 AAAGCAACAATATCTTTTATCCCAATGGAAACTATCTATTTTGCTTGGCAGTTTGTGAAAAGAAG
125 AAAGCAACAATATCATGTATCCTAATAGTAAC-AAATATTTTGCTTGGTACTTTGTGAAAAAAAA
* * * * * * *
10992450 TTATACTTTTACGAT-GAAAGTAGTTTGAATGAGTTGAAGGGTCACCTTTGAAACCAAATAAAAT
189 TTATACTTTTACAATAG-AGGAAGTTTGAATGAATTGAA-GGCCAACTTTGAAACCAAACAAAAT
* * ** ** ** *
10992514 GAAAGCGAGAAATTCTTTTTTCAGTAAATGAAAGCAACAATATTTTGTATCCCTACA-AGAACTA
252 GAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTAT-CCTA-ATGGAACTA
10992578 T
315 T
* * * * * ** * * * ** *
10992579 TTATTTTGCTTGGTTCTTCATGT-AAAA-AGCATAGATTTTTACAATGGAGTAAGTTTGGCCAAA
1 CTATTTTGCTTGGTACTT--TGTGAAAAGAACATATATTTTAATGATAGAGAAAATTTGAAC-GA
* * * * * *
10992642 TGTT-ATA-ACCAACTTTGAAACCAAAAAAAAAAAAAAAATGAAAGGGAGAAATGCTATTT-TTG
63 -GTTAAAAGATCAACTTTCAAACC--------AAACAAAATGAAAGGGAAAAATACT-TTTGTTG
* * * *
10992704 GTAAACAAAAGCAACAATATCATATATCCTAATGGTAACAAACTATTTTGCTTGGTATTTTTTG-
118 GTAAACAAAAGCAACAATATCATGTATCCTAATAGTAACAAA-TATTTTGCTTGGTACTTTGTGA
* ** ** * * *
10992768 AAAAAAATTACACTTTTATGAT-GATAAAATTTGAATGAGTTGAAGGACGAACTTTGAAACCAAA
182 AAAAAAATTATACTTTTACAATAGAGGAAGTTTGAATGAATTGAAGG-CCAACTTTGAAACCAAA
* * ** * *
10992832 CAAAATGAAAGGAAGAAATGCTTTTTTGGGTAAATGAAAGCAACAATATCCTTTATCCCAATGAG
246 CAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAATG-G
10992897 AACTAT
310 AACTAT
* * * * * * ** *
10992903 CTA-CTTGCTTGGTACTTTGTGAAAAGAACATAAAATCTTT-ATGCTAGAGTAAGTCTGATTGAA
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACAT-ATAT-TTTAATGATAGAGAAAATTTGAACGAG
** * * * * * * * * *
10992966 TGGAAAGACCAACTCTAAAACCAAACAAATTGAAAGAGACAAACACTTTTTGTTGGCAATCAAAA
64 TTAAAAGATCAACTTTCAAACCAAACAAAATGAAAGGGAAAAATAC-TTTTGTTGGTAAACAAAA
* ** * * * *
10993031 GCAACGATATTGTGTATCCTAATGGTAACAAGCT-TTTTGGCTTGGTACTTTGTGAAAAGAACTT
128 GCAACAATATCATGTATCCTAATAGTAACAA-ATATTTT-GCTTGGTACTTTGTGAAAAAAAATT
*** * * *
10993095 ATACTTTTATGGTAGAGGAAGTTTTAATGAATT-ATATGACCAATTTTGAAACCAAACAAAAT--
191 ATACTTTTACAATAGAGGAAGTTTGAATGAATTGA-A-GGCCAACTTTGAAACCAAACAAAATGA
* * * * * *
10993157 --GGGAGAAATGCTTTCTTTAGTAAACGAAAGTAATAATATCTTGTATCCTAATAGGAACTAT
254 AAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAAT-GGAACTAT
* * * * * * *
10993218 CTATTTTGCATGGTACTTTGTGAAAATG-ACTTATATTTTTACGATGGAGAAAGTTTGAATGAGT
1 CTATTTTGCTTGGTACTTTGTGAAAA-GAACATATATTTTAATGATAGAGAAAATTTGAACGAGT
* * * * * ** *
10993282 TAAAAGATCAACTTTGAAACCAGATAAAATGAATGGGAGAAATTTTTTTTTTTGGTAAACAAAAG
65 TAAAAGATCAACTTTCAAACCAAACAAAATGAAAGGGA-AAAATACTTTTGTTGGTAAACAAAAG
** * * * * * *
10993347 CAACAATATTGTGTATCCCAAT-GCTCACAAACTATTTTGCTTTGTACTTTATGAAAAGAACTTA
129 CAACAATATCATGTATCCTAATAG-TAACAAA-TATTTTGCTTGGTACTTTGTGAAAAAAAATTA
* * * * *
10993411 TATTTTTACAATGGAGGAAGTTTGAATGAGTTGAATGGTCAACTTTGAAACCAAACAAAATAAAA
192 TACTTTTACAATAGAGGAAGTTTGAATGAATTGAA-GGCCAACTTTGAAACCAAACAAAATGAAA
* * *
10993476 GGGAGAAATGATTTTTTTTGGTAAACAAAAGCCACAATATCCTATATCCTAATGGAACTAT
256 GGGAGAAATG-CTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAATGGAACTAT
* * * *
10993537 CTATTTTGCTTGGTAATTTCTGAAAAGAACATAGATTTTAATGATAGAGAAAATTTGACCGA-TT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATATTTTAATGATAGAGAAAATTTGAACGAGTT
* ** * * *
10993601 GGATGGATCAATTTTCAAACTC-AACAAAATGAATGGGAAAAATACTTTTGTTAGTAAACAAAAG
66 -AAAAGATCAACTTTCAAAC-CAAACAAAATGAAAGGGAAAAATACTTTTGTTGGTAAACAAAAG
* * * *
10993665 CAACAATATCATGTATCCCAATAGTAATAAATATTATT-CTTGGTATTTTTTGAAAAAAAAAATT
129 CAACAATATCATGTATCCTAATAGTAACAAATATT-TTGCTTGGTACTTTGTG--AAAAAAAATT
* * * *
10993729 ATACTTTTACAATGGATGAAGTTTCAATGAATTGAAGGACCAACTTTGAAACCTAACAAAATGAA
191 ATACTTTTACAATAGAGGAAGTTTGAATGAATTGAAGG-CCAACTTTGAAACCAAACAAAATGAA
* * * * * *
10993794 TGGGAGAAATGCTTTTTTGGGTAAACAATAGCAACAATATCGTGTATCCTAATGGTAACAAA
255 AGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAATGG-AACTAT
* * * * *
10993856 CTATTTTACTTGGTACTTTCTAAAAAGAACATATATTTTTACT-AT-G-GAAGAAGTTTAAACGA
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACATATA-TTTTAATGATAGAGAA-AA-TTTGAACGA
* * ** *
10993918 GTTAAAGGA-CAAAC-TTCAAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAA
63 GTTAAAAGATC-AACTTTC-AAACCAAACAAAATGAAAGGGAAAAATACTTTTGTTGGTAAACAA
* * * * * *
10993981 AAGCAACAATATCTTGTAACCTAA-AGAGAAC-TATCATTTTTCTTGGTACTTTGTGAAAAAGAA
126 AAGCAACAATATCATGTATCCTAATAG-TAACAAAT-ATTTTGCTTGGTACTTTGTGAAAAAAAA
* *
10994044 -TATAGCTTTTTACAATAGAGTAAGTTTG-ATCGAATGGAAGGACCAACTTTGAAACCAAACAAA
189 TTATA-C-TTTTACAATAGAGGAAGTTTGAAT-GAATTGAAGG-CCAACTTTGAAACCAAACAAA
* * * * * * * *
10994107 ATGAAAGTGAGAAATGCATTTTTTGCTAAACAAAAGTAACAATATCTTTTATCCCAATAAGAACT
250 ATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAAT-GGAACT
10994172 AT
314 AT
* * * * *
10994174 CTATTTTGCTCGGTACTTTGTG-AAAGAA-ATTATACTTTT-ATGATGGGGGAAGTTTGAA-GAA
1 CTATTTTGCTTGGTACTTTGTGAAAAGAACA-TATA-TTTTAATGATAGAGAAAATTTGAACG-A
* * * * *** * * **
10994235 GTT-AGAGAACCAATTTTGAAACTTGACAAAATGAAAGGGAGAAATGA-TTTTTTTGGTAAATGA
63 GTTAAAAG-ATCAACTTTCAAACCAAACAAAATGAAAGGGAAAAAT-ACTTTTGTTGGTAAACAA
* ** * * * * * ** ** * *
10994298 AAGTAGTACTATCTTGTACCCCAACAAG-AACTATCTATTTTGCTTCATACTTTGTGAAAAGAAT
126 AAGCAACAATATCATGTATCCTAA-TAGTAAC-AAATATTTTGCTTGGTACTTTGTGAAAAAAAA
* * * * * * * *
10994362 TTATACTTTTACAATAAAGTAAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAA
189 TTATACTTTTACAATAGAGGAAGTTTGAATGAATTGAAGG-CCAACTTTGAAAC--CAAACAAAA
* * * * * * * * *
10994427 AGAATGGGAGAAATGCTTTTCTTGGTAAATAAAAGCAAGAATATCTTGTATCCCACTGAGAAATA
251 TGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAATG-GAACTA
10994492 T
315 T
* * * * * * * * *
10994493 CTATTTTGCTTGACT-CTTTATGTAAAGAATATAGATTTATACA--ATGGAGCAAGTTTG-ACCA
1 CTATTTTGCTTG-GTACTTTGTGAAAAGAACATATATTT-TA-ATGATAGAGAAAATTTGAACGA
** * * * ** * *
10994554 AATAGAATGATCAACTTTAAAACCAAATAAAATGAGTGGGAGAAATGCCTTTTG-TGGTAAACAA
63 GTTA-AAAGATCAACTTTCAAACCAAACAAAATGAAAGGGAAAAAT-ACTTTTGTTGGTAAACAA
** * ** * * * *
10994618 AAGCAGTAGTAT-ATGTATCCCCATGGTAACAAATTATTTTGTTTGGTACTTTGTGAAAAGAACT
126 AAGCAACAATATCATGTATCCTAATAGTAACAAA-TATTTTGCTTGGTACTTTGTGAAAAAAAAT
* * * * * * *
10994682 TATAATTTTACAAT-GAAGAAAGTTTGAATGAGTTAAAAGACCAATTTTGAAA-TAAACAAAATG
190 TATACTTTTACAATAG-AGGAAGTTTGAATGAATT-GAAGGCCAACTTTGAAACCAAACAAAATG
*
10994745 AAAGGGACAAATGCTTTTTTTGGTAA
253 AAAGGGAGAAATGCTTTTTTTGGTAA
10994771 TGTAAGCCGC
Statistics
Matches: 1729, Mismatches: 359, Indels: 212
0.75 0.16 0.09
Matches are distributed among these distances:
314 4 0.00
315 215 0.12
316 96 0.06
317 209 0.12
318 273 0.16
319 503 0.29
320 164 0.09
321 16 0.01
322 12 0.01
323 24 0.01
324 115 0.07
325 23 0.01
326 56 0.03
327 6 0.00
328 3 0.00
329 10 0.01
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.32
Consensus pattern (315 bp):
CTATTTTGCTTGGTACTTTGTGAAAAGAACATATATTTTAATGATAGAGAAAATTTGAACGAGTT
AAAAGATCAACTTTCAAACCAAACAAAATGAAAGGGAAAAATACTTTTGTTGGTAAACAAAAGCA
ACAATATCATGTATCCTAATAGTAACAAATATTTTGCTTGGTACTTTGTGAAAAAAAATTATACT
TTTACAATAGAGGAAGTTTGAATGAATTGAAGGCCAACTTTGAAACCAAACAAAATGAAAGGGAG
AAATGCTTTTTTTGGTAAACAAAAGCAACAATATCCTGTATCCTAATGGAACTAT
Found at i:10994472 original size:478 final size:474
Alignment explanation
Indices: 10992259--10994770 Score: 1732
Period size: 478 Copynumber: 5.3 Consensus size: 474
10992249 TGCTAACAAA
* * *
10992259 CTATTTTGCTTGGTACTTTGTGAAAA-AAACTTATACTTTTACAATAGA-AGAAGTTTGAACGAC
1 CTATTTTGCTTGGTACTTTGTGAAAAGAAA-TTATACTTTTACAATGGAGA-AAGTTTGAATGAG
* * * * * * *
10992322 TTGAAGGACCAACTTTAAAACCAAA-AACATGAAAGGCAGAAATGTTTTTTTTTTTGGTAAGTAA
64 TTAAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATG---CTTTTTTTGGTAA-AAA
* ** * * * * * * *
10992386 AAGCAACAATATCTTTTATCCCAATGGAAACTATCTATTTTGCTTGGCAGTTTGTGAAAAGAAGT
125 AAGCAACAATATCTTGTATCCCAAAAG-AACAAACTATTTTGCTTCGTACTTTATGAAAAGAACT
* * * * * * ** * * * **
10992451 TATACTTTTACGATGAAAGTAGTTTGAATGAGTTGAAGGGTCACCTTTGAAACCAAATAAAATGA
189 TATATTTTTACAATG-AAGAAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAAA
* ** ** *
10992516 -AAGCGAGAAAT-TCTTTTTTCAGTAAATGAAAGCAACAATATTTTGTATCCCTACA--AGAACT
253 GAAGGGAGAAATGT-TTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT-CCTA-ATGAGAACT
* * * ** * * * *
10992577 ATTTATTTTGCTTGGTTCTTCATGTAAAA-AGCATAGATTTTTACAATGGAGTAAGTTTGGCCAA
315 ATCTATTTTGCTTGGTACTTTATG-AAAAGAATATAGATTTTTACAATAGAGAAAGTTTGACCGA
** ** * * *
10992641 ATGTTATAACCAACTTTGAAACCAAAAAAAAAAAAAAAATGAAAGGGAGAAATGCTATTTTTGGT
379 ATGGAAGGACCAACTTTGAAACC--------AAACAAAATGAATGGGAGAAATGCT-TTTTTAGT
* * * * *
10992706 AAACAAAAGCAACAATATCATATATCCTAATGGTAACAAA
435 AAACAAAAGCAACAATATCATGTATCCCAATAGTAACTAT
* * * ** * *
10992746 CTATTTTGCTTGGTATTTTTTGAAAA-AAATTACACTTTTATGAT-GATAAAATTTGAATGAGTT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAAATTATACTTTTACAATGGAGAAAGTTTGAATGAGTT
* * * * * *
10992809 GAAGGACGAACTTTGAAACCAAACAAAATGAAAGGAAGAAATGCTTTTTTGGGTAAATGAAAGCA
66 AAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAA-AAAAGCA
* * * * * * * *
10992874 ACAATATCCTT-TATCCCAATGAGAACTATCTA-CTTGCTTGGTACTTTGTGAAAAGAACATAAA
130 ACAATAT-CTTGTATCCCAA-AAGAACAAACTATTTTGCTTCGTACTTTATGAAAAGAAC-TTAT
* * * * ** * * * * * * ***
10992937 ATCTTTATGCTA-G-AGTAAGTCTGATTGAATGGAAA-GACCAACTCTAAAACCAAACAAATTGA
192 AT-TTT-TACAATGAAG-AAGTTTAAACGAGT-TAAAGGACCAACTTTGAAACAAAAAAAAAAAA
* * ** * * * * *
10992999 -AAGAGACAAACACTTTTTGTTGGCAATCAAAAGCAACGATAT-TGTGTATCCTAATG-GTAACA
253 GAAGGGAGAAA-TGTTTTTTTTGGTAAACAAAAGCAACAATATCT-TGTATCCTAATGAG-AACT
* * * * *** * * **
10993061 AGCT-TTTTGGCTTGGTACTTTGTGAAAAGAACT-TATACTTTTATGGTAGAGGAAGTTTTAATG
315 ATCTATTTT-GCTTGGTACTTTATGAAAAGAA-TATAGATTTTTACAATAGAGAAAGTTTGACCG
* * * *
10993124 AAT-TATATGACCAATTTTGAAACCAAAC--AA--AATGGGAGAAATGCTTTCTTTAGTAAACGA
378 AATGGA-AGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTT-TTTAGTAAACAA
* * * * *
10993184 AAGTAATAATATCTTGTATCCTAATAGGAACTAT
441 AAGCAACAATATCATGTATCCCAATAGTAACTAT
* * * *
10993218 CTATTTTGCATGGTACTTTGTGAAAATG-ACTTATATTTTTACGATGGAGAAAGTTTGAATGAGT
1 CTATTTTGCTTGGTACTTTGTGAAAA-GAAATTATACTTTTACAATGGAGAAAGTTTGAATGAGT
* * * * **
10993282 TAAAAGATCAACTTTGAAACCAGATAAAATGAATGGGAGAAATTTTTTTTTTTGGTAAACAAAAG
65 TAAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAA-TGCTTTTTTTGGTAAA-AAAAG
* * *
10993347 CAACAATAT-TGTGTATCCC-AATGCTCACAAACTATTTTGCTTTGTACTTTATGAAAAGAACTT
128 CAACAATATCT-TGTATCCCAAAAG--AACAAACTATTTTGCTTCGTACTTTATGAAAAGAACTT
* * * * * * * *
10993410 ATATTTTTACAATGGAGGAAGTTTGAATGAGTTGAATGG-TCAACTTTGAAACCAAACAAAATAA
190 ATATTTTTACAAT-GAAGAAGTTTAAACGAGTT-AAAGGACCAACTTTGAAACAAAAAAAAAAAA
* * *
10993474 -AAGGGAGAAATGATTTTTTTTGGTAAACAAAAGCCACAATATCCTATATCCTAATG-GAACTAT
253 GAAGGGAGAAATG-TTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCTAATGAGAACTAT
* * * * ** * *
10993537 CTATTTTGCTTGGTAATTTCTGAAAAGAACATAGATTTTAATGATAGAGAAAATTTGACCGATTG
317 CTATTTTGCTTGGTACTTTATGAAAAGAATATAGATTTTTACAATAGAGAAAGTTTGACCGAATG
* * * * * *
10993602 GATGGATCAATTTTCAAACTC-AACAAAATGAATGGGAAAAATACTTTTGTTAGTAAACAAAAGC
382 GAAGGACCAACTTTGAAAC-CAAACAAAATGAATGGGAGAAATGCTTTT-TTAGTAAACAAAAGC
*
10993666 AACAATATCATGTATCCCAATAGTAA-TAA
445 AACAATATCATGTATCCCAATAGTAACTAT
* * * * *
10993695 ATATTATT-CTTGGTATTTTTTGAAAAAAAAAATTATACTTTTACAATGGATG-AAGTTTCAATG
1 CTATT-TTGCTTGGTACTTTGTG--AAAAGAAATTATACTTTTACAATGGA-GAAAGTTTGAATG
* * * * * * *
10993758 AATTGAAGGACCAACTTTGAAACCTAACAAAATGAATGGGAGAAATGCTTTTTTGGGTAAACAAT
62 AGTTAAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAA-AAA
* * ** * * * * *
10993823 AGCAACAATATCGTGTATCCTAATGGTAACAAACTATTTTACTTGGTACTTTCTAAAAAGAACAT
126 AGCAACAATATCTTGTATCCCAAAAG-AACAAACTATTTTGCTTCGTACTTTATGAAAAGAACTT
* * ** * * **
10993888 ATATTTTTACTATGGAAGAAGTTTAAACGAGTTAAAGGACAAACTTCAAAACCAAACAAAATGA-
190 ATATTTTTACAAT-GAAGAAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAAAG
* *
10993952 AAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAACAATATCTTGTAACCTAAAGAGAACTATC-
254 AAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCTAATGAGAACTATCT
* * * * *
10994016 ATTTTTCTTGGTACTTTGTGAAAAAGAATATAGCTTTTTACAATAGAGTAAGTTTGATCGAATGG
319 ATTTTGCTTGGTACTTTATG-AAAAGAATATAGATTTTTACAATAGAGAAAGTTTGACCGAATGG
* * *
10994081 AAGGACCAACTTTGAAACCAAACAAAATGAAAGTGAGAAATGCATTTTTT-GCTAAACAAAAGTA
383 AAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGC-TTTTTTAG-TAAACAAAAGCA
* *
10994145 ACAATATCTTTTATCCCAATAAG-AACTAT
446 ACAATATCATGTATCCCAAT-AGTAACTAT
* ** * *
10994174 CTATTTTGCTCGGTACTTTGTG-AAAGAAATTATACTTTTATGATGGGGGAAGTTTGAA-GAAGT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAAATTATACTTTTACAATGGAGAAAGTTTGAATG-AGT
* * *** * *
10994237 T-AGAGAACCAATTTTGAAACTTGACAAAATGAAAGGGAGAAATGATTTTTTTGGTAAATGAAAG
65 TAAAAG-ACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAA-AAAAG
* ** * * * * * * *
10994301 TAGTACTATCTTGTACCCCAACAAGAACTATCTATTTTGCTTCATACTTTGTGAAAAGAATTTAT
128 CAACAATATCTTGTATCCCAA-AAGAACAAACTATTTTGCTTCGTACTTTATGAAAAGAACTTAT
* *
10994366 ACTTTTACAATAAAGTAAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAAAGAA
192 ATTTTTACAATGAAG-AAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAAAGAA
* * * * * * *
10994431 TGGGAGAAATGCTTTTCTTGGTAAATAAAAGCAAGAATATCTTGTATCCCACTGAGAAATATCTA
256 -GGGAGAAATGTTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCTAATGAGAACTATCTA
* * * * * * *
10994496 TTTTGCTTGACT-CTTTATGTAAAGAATATAGATTTATACAATGGAGCAAGTTTGACCAAATAGA
320 TTTTGCTTG-GTACTTTATGAAAAGAATATAGATTTTTACAATAGAGAAAGTTTGACCGAATGGA
* * * * * * * **
10994560 ATGATCAACTTTAAAACCAAATAAAATGAGTGGGAGAAATGCCTTTTGTGGTAAACAAAAGCAGT
384 AGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATG-CTTTTTTAGTAAACAAAAGCAAC
* * * *
10994625 AGTAT-ATGTATCCCCATGGTAACAAAT
448 AATATCATGTATCCCAATAGTAAC-TAT
* * * *
10994652 -TATTTTGTTTGGTACTTTGTGAAAAGAACTTATAATTTTACAATGAAGAAAGTTTGAATGAGTT
1 CTATTTTGCTTGGTACTTTGTGAAAAGAAATTATACTTTTACAATGGAGAAAGTTTGAATGAGTT
* * *
10994716 AAAAGACCAATTTTGAAA-TAAACAAAATGAAAGGGACAAATGCTTTTTTTGGTAA
66 AAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAA
10994771 TGTAAGCCGC
Statistics
Matches: 1607, Mismatches: 340, Indels: 166
0.76 0.16 0.08
Matches are distributed among these distances:
471 2 0.00
472 73 0.05
473 18 0.01
474 122 0.08
475 133 0.08
476 205 0.13
477 146 0.09
478 483 0.30
479 115 0.07
480 2 0.00
482 25 0.02
483 97 0.06
484 90 0.06
485 39 0.02
486 30 0.02
487 27 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.32
Consensus pattern (474 bp):
CTATTTTGCTTGGTACTTTGTGAAAAGAAATTATACTTTTACAATGGAGAAAGTTTGAATGAGTT
AAAAGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAAAAAAGCAA
CAATATCTTGTATCCCAAAAGAACAAACTATTTTGCTTCGTACTTTATGAAAAGAACTTATATTT
TTACAATGAAGAAGTTTAAACGAGTTAAAGGACCAACTTTGAAACAAAAAAAAAAAAGAAGGGAG
AAATGTTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCTAATGAGAACTATCTATTTTGC
TTGGTACTTTATGAAAAGAATATAGATTTTTACAATAGAGAAAGTTTGACCGAATGGAAGGACCA
ACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTAGTAAACAAAAGCAACAATATCAT
GTATCCCAATAGTAACTAT
Found at i:11009552 original size:21 final size:21
Alignment explanation
Indices: 11009527--11009568 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11009517 TTAAACATGC
11009527 AATAGAACCAAAATAAACCAA
1 AATAGAACCAAAATAAACCAA
** *
11009548 AATAGAATTAAACTAAACCAA
1 AATAGAACCAAAATAAACCAA
11009569 TATATGAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.64, C:0.17, G:0.05, T:0.14
Consensus pattern (21 bp):
AATAGAACCAAAATAAACCAA
Found at i:11010024 original size:17 final size:17
Alignment explanation
Indices: 11010002--11010035 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
11009992 AAACAAAACC
11010002 AAATATAAAGATTGAGT
1 AAATATAAAGATTGAGT
11010019 AAATATAAAGATTGAGT
1 AAATATAAAGATTGAGT
11010036 CTTTAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (17 bp):
AAATATAAAGATTGAGT
Found at i:11014225 original size:10 final size:10
Alignment explanation
Indices: 11014198--11014230 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
11014188 ACAAAAACTT
*
11014198 GAAAACTAAA
1 GAAAACTTAA
11014208 GAAAACTTAA
1 GAAAACTTAA
11014218 GAAAACTT-A
1 GAAAACTTAA
11014227 GAAA
1 GAAA
11014231 CAAGAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.64, C:0.09, G:0.12, T:0.15
Consensus pattern (10 bp):
GAAAACTTAA
Found at i:11014597 original size:20 final size:21
Alignment explanation
Indices: 11014558--11014597 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11014548 TCAACATGAA
* *
11014558 TCAATATTCTTTAATGTTGCT
1 TCAATATTCTTCAATCTTGCT
11014579 TCAA-ATTCTTCAATCTTGC
1 TCAATATTCTTCAATCTTGC
11014598 ATCCTTCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (21 bp):
TCAATATTCTTCAATCTTGCT
Found at i:11020371 original size:18 final size:19
Alignment explanation
Indices: 11020316--11020383 Score: 75
Period size: 18 Copynumber: 3.5 Consensus size: 19
11020306 AAACCTTTGG
* **
11020316 ATCTTTGAATCTTTTATGA
1 ATCTTTGAACCTTTTACAA
11020335 ATCTTTGAAACCTTTTTACAA
1 ATCTTTG-AACC-TTTTACAA
11020356 ATCTTTGAA-CTTTTACAA
1 ATCTTTGAACCTTTTACAA
*
11020374 AGCTTTGAAC
1 ATCTTTGAAC
11020384 TCATTTGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 16 0.38
19 8 0.19
20 5 0.12
21 13 0.31
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (19 bp):
ATCTTTGAACCTTTTACAA
Found at i:11020765 original size:23 final size:23
Alignment explanation
Indices: 11020726--11020792 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
11020716 AAGTGAATTT
*
11020726 CTAAAA-TTGTAGATGTGAATCA
1 CTAAAATTTTTAGATGTGAATCA
* *
11020748 TTAAAATTTTTAGATGTGAATCC
1 CTAAAATTTTTAGATGTGAATCA
* *
11020771 CTAAAATTCTTATATGTGAATC
1 CTAAAATTTTTAGATGTGAATC
11020793 TTTTAACTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 5 0.13
23 33 0.87
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.39
Consensus pattern (23 bp):
CTAAAATTTTTAGATGTGAATCA
Found at i:11022466 original size:54 final size:54
Alignment explanation
Indices: 11022311--11022604 Score: 254
Period size: 55 Copynumber: 5.4 Consensus size: 54
11022301 AGCGTTAAGG
* ** * *
11022311 TAAGGAAAATTTGATATTTCAACTTTTTTTTCAAAATTTTAAAATTACTATTTTT
1 TAAGGAAAAATTGATATTTCAACTTTTTCCTC-AAATTTTGAAATTACTTTTTTT
* * *
11022366 TAA-GAAAAGATTGATATTTCAACTATTTTCTCTTAATTTTTGAAATTATTTTTTTT
1 TAAGGAAAA-ATTGATATTTCAACT-TTTTC-CTCAAATTTTGAAATTACTTTTTTT
* * * * * **
11022422 TAAGGAAAAATTAAGATTTCGACTTTTTCCTTAAATTTTAAAATTACCTTCGTTT
1 TAAGGAAAAATTGATATTTCAACTTTTTCCTCAAATTTTGAAATTA-CTTTTTTT
** * * *
11022477 TAAGGAAATTTTGATATTTCAACTTTTTTCTCAAACTTTTGAAATTA-TATTTCT
1 TAAGGAAAAATTGATATTTCAACTTTTTCCTCAAA-TTTTGAAATTACTTTTTTT
* * *
11022531 TAAGAAAAAATTGATATTTGAACATTTTT-CTCAAATTTTGAACTTA-TTGTTTATT
1 TAAGGAAAAATTGATATTTCAAC-TTTTTCCTCAAATTTTGAAATTACTT-TTT-TT
**
11022586 TAAGGAAATTTTGATATTT
1 TAAGGAAAAATTGATATTT
11022605 TATTTTTTTC
Statistics
Matches: 192, Mismatches: 38, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
53 11 0.06
54 51 0.27
55 77 0.40
56 47 0.24
57 6 0.03
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (54 bp):
TAAGGAAAAATTGATATTTCAACTTTTTCCTCAAATTTTGAAATTACTTTTTTT
Found at i:11022478 original size:111 final size:108
Alignment explanation
Indices: 11022344--11022542 Score: 265
Period size: 111 Copynumber: 1.8 Consensus size: 108
11022334 TTTTTTTTCA
* * *
11022344 AAATTTTAAAATTACTATTTTTTAAGAAAAGATTGATATTTCAACTATTTTCTCTTAATTTTTGA
1 AAATTTTAAAATTACTATGTTTTAAGAAAAGATTGATATTTCAACTATTTTCTC-AAACTTTTGA
* * *
11022409 AATTATTTTTTTTTAAGGAAAAATTAAGATTTCGACTTTTTCCTT
65 AATTA-TATTTCTTAAGAAAAAATTAAGATTTCGACTTTTTCCTT
* ** *
11022454 AAATTTTAAAATTACCT-TCGTTTTAAGGAAATTTTGATATTTCAACTTTTTTCTCAAACTTTTG
1 AAATTTTAAAATTA-CTAT-GTTTTAAGAAAAGATTGATATTTCAACTATTTTCTCAAACTTTTG
11022518 AAATTATATTTCTTAAGAAAAAATT
64 AAATTATATTTCTTAAGAAAAAATT
11022543 GATATTTGAA
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
109 16 0.21
110 28 0.36
111 33 0.43
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (108 bp):
AAATTTTAAAATTACTATGTTTTAAGAAAAGATTGATATTTCAACTATTTTCTCAAACTTTTGAA
ATTATATTTCTTAAGAAAAAATTAAGATTTCGACTTTTTCCTT
Found at i:11022591 original size:109 final size:109
Alignment explanation
Indices: 11022311--11022604 Score: 301
Period size: 109 Copynumber: 2.7 Consensus size: 109
11022301 AGCGTTAAGG
* * * * * * **
11022311 TAAGGAAAATTTGATATTTCAACTTTTTTTTCAAAATTTTAAAATTACTATTTTTTAAGAAAAGA
1 TAAGGAAAAATTGATATTTGAAC-TTTTTCTC-AAATTTTAAAATTATTGTTTTTTAAGGAAATT
* * * *
11022376 TTGATATTTCAACTATTTTCTCTTAATTTTTGAAATTATTTTTTTT
64 TTGATATTTCAACTATTTTCTCTAAACTTTTGAAATTATTATTTCT
* * *
11022422 TAAGGAAAAATTAAGATTTCG-ACTTTTTCCTTAAATTTTAAAATTACCTTCG--TTTTAAGGAA
1 TAAGGAAAAATTGATATTT-GAACTTTTT-CTCAAATTTTAAAATTA--TT-GTTTTTTAAGGAA
*
11022484 ATTTTGATATTTCAACTTTTTTCTC-AAACTTTTGAAATTA-TATTTCT
61 ATTTTGATATTTCAACTATTTTCTCTAAACTTTTGAAATTATTATTTCT
* * *
11022531 TAAGAAAAAATTGATATTTGAACATTTTTCTCAAATTTTGAACTTATTGTTTATTTAAGGAAATT
1 TAAGGAAAAATTGATATTTGAAC-TTTTTCTCAAATTTTAAAATTATTGTTT-TTTAAGGAAATT
11022596 TTGATATTT
64 TTGATATTT
11022605 TATTTTTTTC
Statistics
Matches: 151, Mismatches: 22, Indels: 22
0.77 0.11 0.11
Matches are distributed among these distances:
106 1 0.01
107 2 0.01
108 2 0.01
109 58 0.38
110 37 0.25
111 50 0.33
112 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (109 bp):
TAAGGAAAAATTGATATTTGAACTTTTTCTCAAATTTTAAAATTATTGTTTTTTAAGGAAATTTT
GATATTTCAACTATTTTCTCTAAACTTTTGAAATTATTATTTCT
Found at i:11022602 original size:55 final size:54
Alignment explanation
Indices: 11022311--11022604 Score: 254
Period size: 54 Copynumber: 5.4 Consensus size: 54
11022301 AGCGTTAAGG
* * * * *
11022311 TAAGGAAAATTTGATATTTCAACTTTTTTTTCAAAATTTTAAAATTACTATTTTT
1 TAAGGAAAAATTGATATTTCAACATTTTTCTC-AAATTTTGAAATTATTATTTTT
* * *
11022366 TAA-GAAAAGATTGATATTTCAACTATTTTCTCTTAATTTTTGAAATTATTTTTTTT
1 TAAGGAAAA-ATTGATATTTCAAC-ATTTT-TCTCAAATTTTGAAATTATTATTTTT
* * * * * **
11022422 TAAGGAAAAATTAAGATTTCGAC-TTTTTCCTTAAATTTTAAAATTACCTT-CGTTT
1 TAAGGAAAAATTGATATTTCAACATTTTT-CTCAAATTTTGAAATTA--TTATTTTT
** * *
11022477 TAAGGAAATTTTGATATTTCAACTTTTTTCTCAAACTTTTGAAATTA-TATTTCT
1 TAAGGAAAAATTGATATTTCAACATTTTTCTCAAA-TTTTGAAATTATTATTTTT
* * * *
11022531 TAAGAAAAAATTGATATTTGAACATTTTTCTCAAATTTTGAACTTATTGTTTATT
1 TAAGGAAAAATTGATATTTCAACATTTTTCTCAAATTTTGAAATTATTATTT-TT
**
11022586 TAAGGAAATTTTGATATTT
1 TAAGGAAAAATTGATATTT
11022605 TATTTTTTTC
Statistics
Matches: 191, Mismatches: 36, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
53 12 0.06
54 60 0.31
55 59 0.31
56 53 0.28
57 7 0.04
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (54 bp):
TAAGGAAAAATTGATATTTCAACATTTTTCTCAAATTTTGAAATTATTATTTTT
Found at i:11024738 original size:17 final size:17
Alignment explanation
Indices: 11024708--11024874 Score: 97
Period size: 17 Copynumber: 9.8 Consensus size: 17
11024698 CAAAAGTTTG
*
11024708 CAAGACTTTCAAATTCA
1 CAAGATTTTCAAATTCA
* **
11024725 CAAGATTTTTAAATTTG
1 CAAGATTTTCAAATTCA
**
11024742 CATA-ATTTAAAAATTCA
1 CA-AGATTTTCAAATTCA
* *
11024759 TAAAATTTTCAAATTCA
1 CAAGATTTTCAAATTCA
* *
11024776 CAAGA-ATTAAAGATTCA
1 CAAGATTTTCAA-ATTCA
**
11024793 CAAGATTTTCAAATTTG
1 CAAGATTTTCAAATTCA
* * * **
11024810 TAAAAATTGAAAATTCA
1 CAAGATTTTCAAATTCA
11024827 CAAGAATTTTCAAATTCA
1 CAAG-ATTTTCAAATTCA
* * *
11024845 CAA-AATTTGAAGATTCG
1 CAAGATTTTCAA-ATTCA
11024862 CAAGATTTTCAAA
1 CAAGATTTTCAAA
11024875 GTTTCGCAAT
Statistics
Matches: 107, Mismatches: 36, Indels: 14
0.68 0.23 0.09
Matches are distributed among these distances:
16 11 0.10
17 72 0.67
18 24 0.22
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.34
Consensus pattern (17 bp):
CAAGATTTTCAAATTCA
Found at i:11024756 original size:34 final size:33
Alignment explanation
Indices: 11024675--11024905 Score: 144
Period size: 34 Copynumber: 6.7 Consensus size: 33
11024665 TCTCATTTTA
* * *
11024675 AAATTCAAAAATCCACAAGA-ATTCAAAAGTTTGC
1 AAATTTAAAAATTCACAAGATTTTC-AAA-TTTGC
* *
11024709 AAGACTTT-CAAATTCACAAGATTTTTAAATTTGC
1 AA-A-TTTAAAAATTCACAAGATTTTCAAATTTGC
* * **
11024743 ATAATTTAAAAATTCATAAAATTTTCAAATTCAC
1 A-AATTTAAAAATTCACAAGATTTTCAAATTTGC
* * *
11024777 AAGAATTAAAGATTCACAAGATTTTCAAATTTGTA
1 AA-ATTTAAAAATTCACAAGATTTTCAAATTTG-C
* * **
11024812 AAAATTGAAAATTCACAAGAATTTTCAAATTCAC
1 AAATTTAAAAATTCACAAG-ATTTTCAAATTTGC
* * *
11024846 AAAATTTGAAGATTCGCAAGATTTTCAAAGTTTCGC
1 -AAATTTAAAAATTCACAAGATTTTCAAA-TTT-GC
* *
11024882 -AATTATAAAGATTCACAAAATTTT
1 AAATT-TAAAAATTCACAAGATTTT
11024906 TAAAAATTCA
Statistics
Matches: 154, Mismatches: 31, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
33 4 0.03
34 82 0.53
35 63 0.41
36 5 0.03
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (33 bp):
AAATTTAAAAATTCACAAGATTTTCAAATTTGC
Found at i:11024866 original size:69 final size:68
Alignment explanation
Indices: 11024720--11024905 Score: 223
Period size: 69 Copynumber: 2.7 Consensus size: 68
11024710 AGACTTTCAA
* * * *
11024720 ATTCACAAGATTTTTAAATTTGCATAATTTAAAAATTCATAAAATTTTCAAATTCACAAGAATTA
1 ATTCACAAGATTTTCAAATTTGCAAAAATTAAAAATTCACAAAATTTTCAAATTCACAAGAATTA
11024785 AAG
66 AAG
* *
11024788 ATTCACAAGATTTTCAAATTTGTAAAAATTGAAAATTCACAAGAATTTTCAAATTCACAA-AATT
1 ATTCACAAGATTTTCAAATTTGCAAAAATTAAAAATTCACAA-AATTTTCAAATTCACAAGAA-T
*
11024852 TGAAG
64 TAAAG
* ** *
11024857 ATTCGCAAGATTTTCAAAGTTTCGCAATTA-TAAAGATTCACAAAATTTT
1 ATTCACAAGATTTTCAAA-TTT-GCAAAAATTAAAAATTCACAAAATTTT
11024906 TAAAAATTCA
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
68 38 0.38
69 45 0.45
70 14 0.14
71 4 0.04
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (68 bp):
ATTCACAAGATTTTCAAATTTGCAAAAATTAAAAATTCACAAAATTTTCAAATTCACAAGAATTA
AAG
Found at i:11025092 original size:23 final size:22
Alignment explanation
Indices: 11025062--11025186 Score: 94
Period size: 23 Copynumber: 5.6 Consensus size: 22
11025052 TCCAAAATTC
11025062 AAAGATTCACATTCGAAGATTTT
1 AAAGATTCACATTCGAA-ATTTT
* * *
11025085 AAAGATTCA-A-CCTAAACTTT
1 AAAGATTCACATTCGAAATTTT
** * **
11025105 AAAGATTTTCATTCAAAAAACTT
1 AAAGATTCACATTC-GAAATTTT
11025128 AAAGATTCACATTC-AAATTTT
1 AAAGATTCACATTCGAAATTTT
* *
11025149 CAAAGATCCTCATTTCGTAAATTTT
1 -AAAGATTCACA-TTCG-AAATTTT
11025174 AAAGATTCACATT
1 AAAGATTCACATT
11025187 TAAGATTCAA
Statistics
Matches: 78, Mismatches: 17, Indels: 14
0.72 0.16 0.13
Matches are distributed among these distances:
20 11 0.14
21 9 0.12
22 11 0.14
23 31 0.40
24 9 0.12
25 7 0.09
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (22 bp):
AAAGATTCACATTCGAAATTTT
Found at i:11026044 original size:4 final size:4
Alignment explanation
Indices: 11026035--11026059 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
11026025 ATGGACATTA
11026035 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
11026060 ATCATTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:11027457 original size:23 final size:23
Alignment explanation
Indices: 11027431--11027490 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
11027421 TCATGTTACA
11027431 TAAAAGAAATCCTAGCATTGCTC
1 TAAAAGAAATCCTAGCATTGCTC
* *
11027454 TAAAAGAATTCCTAGCGTTGCTC
1 TAAAAGAAATCCTAGCATTGCTC
11027477 TAAAAGAAATCCTA
1 TAAAAGAAATCCTA
11027491 AAATGACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (23 bp):
TAAAAGAAATCCTAGCATTGCTC
Found at i:11030747 original size:56 final size:56
Alignment explanation
Indices: 11030686--11030978 Score: 231
Period size: 53 Copynumber: 5.3 Consensus size: 56
11030676 AAAGAAAACA
* *
11030686 TGATATTTCAA-TATTTTTCTCAAAATTTTAAAATTATTATT-TTTTAAGAGAAAGAT
1 TGATATTTCAACT-TTTTTCTCAAAATTTTAAAATTATT-TTATTTTAAGAAAAAAAT
* * * *
11030742 TGATATTTCAACTCTTGTCTCTAAATTTTTGAAATTATTTTTATTTTAAGAAAAATAA-
1 TGATATTTCAACTTTTTTCTC-AAAATTTTAAAATTA-TTTTATTTTAAGAAAAA-AAT
* * *
11030800 T-ATATTTTAACTTTTTTCT-GAAATTTTAAAATTACTTTTGTTTT-A-AAAAAAAT
1 TGATATTTCAACTTTTTTCTCAAAATTTTAAAATTA-TTTTATTTTAAGAAAAAAAT
* * *
11030853 TGATATTTCAAC-TTTTTCTTC-AATTTTTGAAATTATTTT-TATTTATGAAAAAAAT
1 TGATATTTCAACTTTTTTC-TCAAAATTTTAAAATTATTTTAT-TTTAAGAAAAAAAT
* * *
11030908 T-ATATTTCAACTTTTTCCTC--AA-TTTAAAATTAACTTTT-GTTTAA-ATAAAAAT
1 TGATATTTCAACTTTTTTCTCAAAATTTTAAAATT-A-TTTTATTTTAAGAAAAAAAT
* *
11030960 TAATATTTCAATTTTTTTC
1 TGATATTTCAACTTTTTTC
11030979 ATCTTTGAAA
Statistics
Matches: 195, Mismatches: 26, Indels: 35
0.76 0.10 0.14
Matches are distributed among these distances:
52 19 0.10
53 40 0.21
54 39 0.20
55 34 0.17
56 17 0.09
57 31 0.16
58 14 0.07
59 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.51
Consensus pattern (56 bp):
TGATATTTCAACTTTTTTCTCAAAATTTTAAAATTATTTTATTTTAAGAAAAAAAT
Found at i:11030845 original size:55 final size:51
Alignment explanation
Indices: 11030662--11030978 Score: 205
Period size: 54 Copynumber: 5.8 Consensus size: 51
11030652 TATCCTTTGG
* *
11030662 AATTGTTTTCTTTTAA-AGAAAACATGATATTTCAA-TATTTTTCTCAAAATTTTAA
1 AATTATTTT-TTTTAAGA-AAAAAAT-ATATTTCAACT-TTTTTCT--AAATTTTAA
* * * *
11030717 AATTATTATTTTTTAAGAGAAAGATTGATATTTCAACTCTTGTCTCTAAATTTTTGA
1 AATTATT-TTTTTTAAGA-AAAAAAT-ATATTTCAACT-TT-TTTCTAAA-TTTTAA
*
11030774 AATTATTTTTATTTTAAGAAAAATAATATATTTTAACTTTTTTCTGAAATTTTAA
1 AATTA-TTTT-TTTTAAGAAAAA-AATATATTTCAACTTTTTTCT-AAATTTTAA
* * *
11030829 AATTACTTTTGTTTTAA-AAAAAATTGATATTTCAAC-TTTTTCTTCAATTTTTGA
1 AATTA-TTTT-TTTTAAGAAAAAAAT-ATATTTCAACTTTTTTC-T-AAATTTTAA
* * *
11030883 AATTATTTTTATTTATGAAAAAAATTATATTTCAACTTTTTCCTCAA-TTTAA
1 AATTATTTTT-TTTAAGAAAAAAA-TATATTTCAACTTTTTTCTAAATTTTAA
* * *
11030935 AATTAACTTTTGTTTAA-ATAAAAATTAATATTTCAATTTTTTTC
1 AATT-A-TTTTTTTTAAGA-AAAAAAT-ATATTTCAACTTTTTTC
11030979 ATCTTTGAAA
Statistics
Matches: 213, Mismatches: 30, Indels: 40
0.75 0.11 0.14
Matches are distributed among these distances:
52 11 0.05
53 42 0.20
54 48 0.23
55 42 0.20
56 26 0.12
57 28 0.13
58 16 0.08
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (51 bp):
AATTATTTTTTTTAAGAAAAAAATATATTTCAACTTTTTTCTAAATTTTAA
Found at i:11030868 original size:54 final size:54
Alignment explanation
Indices: 11030623--11030978 Score: 247
Period size: 55 Copynumber: 6.5 Consensus size: 54
11030613 AATTATTTCA
* * ** * *
11030623 AAAGAAAATTTGATATTTCAAC-TTTTTCT-TATCCTTTGGAATT-GTTTTCTTTT
1 AAAGAAAAATTGATATTTCAACTTTTTTCTAAAT--TTTAAAATTACTTTTATTTT
11030676 AAAGAAAACA-TGATATTTCAA-TATTTTTCTCAAAATTTTAAAATTA-TTATT-TTTT
1 AAAGAAAA-ATTGATATTTCAACT-TTTTTCT--AAATTTTAAAATTACTT-TTATTTT
* * * *
11030731 AAGAGAAAGATTGATATTTCAACTCTTGTCTCTAAATTTTTGAAATTATTTTTATTTT
1 AA-AGAAAAATTGATATTTCAACT-TT-TTTCTAAA-TTTTAAAATTACTTTTATTTT
* *
11030789 -AAGAAAAATAAT-ATATTTTAACTTTTTTCTGAAATTTTAAAATTACTTTTGTTTT
1 AAAGAAAAAT--TGATATTTCAACTTTTTTCT-AAATTTTAAAATTACTTTTATTTT
* * *
11030844 AAA-AAAAATTGATATTTCAAC-TTTTTCTTCAATTTTTGAAATTATTTTTATTTAT
1 AAAGAAAAATTGATATTTCAACTTTTTTC-T-AAATTTTAAAATTACTTTTATTT-T
* * * *
11030899 GAA-AAAAATT-ATATTTCAACTTTTTCCTCAA-TTTAAAATTAACTTTT-GTTT
1 AAAGAAAAATTGATATTTCAACTTTTTTCTAAATTTTAAAATT-ACTTTTATTTT
* * *
11030950 AAATAAAAATTAATATTTCAATTTTTTTC
1 AAAGAAAAATTGATATTTCAACTTTTTTC
11030979 ATCTTTGAAA
Statistics
Matches: 247, Mismatches: 30, Indels: 52
0.75 0.09 0.16
Matches are distributed among these distances:
51 3 0.01
52 17 0.07
53 47 0.19
54 47 0.19
55 59 0.24
56 35 0.14
57 28 0.11
58 11 0.04
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (54 bp):
AAAGAAAAATTGATATTTCAACTTTTTTCTAAATTTTAAAATTACTTTTATTTT
Found at i:11031005 original size:107 final size:109
Alignment explanation
Indices: 11030708--11031001 Score: 347
Period size: 107 Copynumber: 2.7 Consensus size: 109
11030698 ATTTTTCTCA
* * * * *
11030708 AAATTTTAAAATTA-TTATT-TTTTAAGAGAAAGATTGATATTTCAACTCTTGTCTCTAAATTTT
1 AAATTTTAAAATTACTT-TTGTTTTAA-A-AAAAATTAATATTTCAACT-TTTTCT-TCAATCTT
* * *
11030771 TGAAATTATTTTTATTTTAAGAAAAATAATATATTTTAACTTTTTTCTG
61 TGAAATTATTTTTATTTTATGAAAAATAATATATTTCAACTTTTTCCTG
* *
11030820 AAATTTTAAAATTACTTTTGTTTTAAAAAAAATTGATATTTCAACTTTTTCTTCAATTTTTGAAA
1 AAATTTTAAAATTACTTTTGTTTTAAAAAAAATTAATATTTCAACTTTTTCTTCAATCTTTGAAA
11030885 TTATTTTTA-TTTATGAAAAA-AATTATATTTCAACTTTTTCCT-
66 TTATTTTTATTTTATGAAAAATAA-TATATTTCAACTTTTTCCTG
*
11030927 CAA-TTTAAAATTAACTTTTG-TTTAAATAAAAATTAATATTTCAA-TTTTT-TTC-ATCTTTGA
1 AAATTTTAAAATT-ACTTTTGTTTTAAA-AAAAATTAATATTTCAACTTTTTCTTCAATCTTTGA
11030987 AATTATTTTTATTTT
64 AATTATTTTTATTTT
11031002 TTATTAATAT
Statistics
Matches: 167, Mismatches: 9, Indels: 19
0.86 0.05 0.10
Matches are distributed among these distances:
104 18 0.11
105 6 0.04
106 20 0.12
107 27 0.16
108 27 0.16
109 21 0.13
110 5 0.03
111 18 0.11
112 17 0.10
113 8 0.05
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (109 bp):
AAATTTTAAAATTACTTTTGTTTTAAAAAAAATTAATATTTCAACTTTTTCTTCAATCTTTGAAA
TTATTTTTATTTTATGAAAAATAATATATTTCAACTTTTTCCTG
Found at i:11037021 original size:12 final size:12
Alignment explanation
Indices: 11037000--11037059 Score: 61
Period size: 12 Copynumber: 4.8 Consensus size: 12
11036990 AATTGACGAA
11037000 ATTTAGTTTTTTT
1 ATTTA-TTTTTTT
11037013 -TTTATTTTTTT
1 ATTTATTTTTTT
11037024 -TCTTATTATTTATT
1 AT-TTATT-TTT-TT
*
11037038 ATTTATTTTATT
1 ATTTATTTTTTT
11037050 ATTTATTTTT
1 ATTTATTTTT
11037060 CATGTTATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
11 8 0.20
12 20 0.49
13 5 0.12
14 7 0.17
15 1 0.02
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (12 bp):
ATTTATTTTTTT
Found at i:11037037 original size:19 final size:18
Alignment explanation
Indices: 11037013--11037059 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
11037003 TAGTTTTTTT
*
11037013 TTTATTTTTTTTCTTATTA
1 TTTATTTTTATT-TTATTA
11037032 TTTATTATTTATTTTATTA
1 TTTATT-TTTATTTTATTA
11037051 TTTATTTTT
1 TTTATTTTT
11037060 CATGTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 3 0.12
19 18 0.69
20 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTATTTTTATTTTATTA
Found at i:11037067 original size:19 final size:19
Alignment explanation
Indices: 11037026--11037068 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
11037016 ATTTTTTTTC
*
11037026 TTATTATTTATTATTTATT
1 TTATTATTTATTATTTATG
11037045 TTATTATTTATT-TTTCATG
1 TTATTATTTATTATTT-ATG
11037064 TTATT
1 TTATT
11037069 TCTAGTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTATTTATTATTTATG
Found at i:11037174 original size:14 final size:13
Alignment explanation
Indices: 11037103--11037186 Score: 57
Period size: 13 Copynumber: 6.3 Consensus size: 13
11037093 AGGATATGTT
11037103 AAAATAAAT-ATA
1 AAAATAAATAATA
* *
11037115 ATAAT-AATAAGA
1 AAAATAAATAATA
11037127 AAACA-AAATAATA
1 AAA-ATAAATAATA
* *
11037140 AACATAAACTTTATA
1 AAAATAAA--TAATA
*
11037155 ATAATAAATGAATA
1 AAAATAAAT-AATA
11037169 AAAATAAATAATGA
1 AAAATAAATAAT-A
11037183 AAAA
1 AAAA
11037187 CAACTCAAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
11 3 0.06
12 9 0.17
13 16 0.30
14 16 0.30
15 10 0.19
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAATAAATAATA
Found at i:11037334 original size:123 final size:120
Alignment explanation
Indices: 11037207--11037657 Score: 494
Period size: 123 Copynumber: 3.8 Consensus size: 120
11037197 ATGATAAAAT
* *
11037207 AAAAA-AAAATCACAAGTAGTGATTTTATTAAAAATATTTATATAAAGAAATTTTATAAAATATT
1 AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTATATAAAGAAATTTTCTAAAATATT
* *
11037271 CTAAAAATGTTAAAAATATTTTAGATTTTTTTCAAACATTAAAAAAAATATTATTAATA
66 CTAAAAGTATTAAAAATATTTTA-ATTTTTTTCAAACA-T-AAAAAAA-ATTATTAATA
* * * * *
11037330 AAAAATAAAATCACAAGTGGTGA-TTTAGTAAAAATATTTATACAATGAGATTTTTTAAAATATT
1 AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTATATAAAGAAATTTTCTAAAATATT
* *
11037394 ATAAAAGTATTAGAAATATTTTACATTTTTTTCAAACAT-AAAAAAATTATTAATA
66 CTAAAAGTATTAAAAATATTTTA-ATTTTTTTCAAACATAAAAAAAATTATTAATA
* * *
11037449 AAAAATAAAATCACAAGTGGTGATTGTATTAAAAATATTTACATAATGAAATTTTCTAAAATATT
1 AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTATATAAAGAAATTTTCTAAAATATT
* ** * * *
11037514 CTAAAAGTGTTTTAGA-A---T--TTTTTTTCAAATATAAAAAAGCATTATTAATAA
66 CTAAAAGTATTAAAAATATTTTAATTTTTTTCAAACATAAAAAA-AATTATTAAT-A
* ** * *
11037565 AAAAATAAAGTCACAAGTGGCAATTTTATT-AAAA-ATTTACT-TAAATAAATTTTCTAAAGTAT
1 AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTA-TATAAAGAAATTTTCTAAAATAT
* * *
11037627 TCTAAAAGTATCAAAAATATTTAAAATTTTT
65 TCTAAAAGTATTAAAAATATTTTAATTTTTT
11037658 CAATCACAAA
Statistics
Matches: 277, Mismatches: 39, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
113 13 0.05
114 40 0.14
115 14 0.05
116 28 0.10
119 34 0.12
120 57 0.21
122 1 0.00
123 74 0.27
124 16 0.06
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.38
Consensus pattern (120 bp):
AAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTATATAAAGAAATTTTCTAAAATATT
CTAAAAGTATTAAAAATATTTTAATTTTTTTCAAACATAAAAAAAATTATTAATA
Found at i:11037618 original size:114 final size:113
Alignment explanation
Indices: 11037419--11037635 Score: 314
Period size: 114 Copynumber: 1.9 Consensus size: 113
11037409 ATATTTTACA
**
11037419 TTTTTTTCAAACATAAAAAAATTATTAATAAAAAATAAAATCACAAGTGGTGATTGTATTAAAAA
1 TTTTTTTCAAACATAAAAAAATTATTAATAAAAAATAAAATCACAAGTGGCAATTGTATTAAAAA
11037484 TATTTACATAATGAAATTTTCTAAAATATTCTAAAAGTGTTTTAGAAT
66 TATTTACATAATGAAATTTTCTAAAATATTCTAAAAGTGTTTTAGAAT
* * *
11037532 TTTTTTTCAAATATAAAAAAGCATTATTAATAAAAAAATAAAGTCACAAGTGGCAATTTTATT-A
1 TTTTTTTCAAACATAAAAAA--ATTATTAAT-AAAAAATAAAATCACAAGTGGCAATTGTATTAA
* *
11037596 AAA-ATTTACTTAAAT-AAATTTTCTAAAGTATTCTAAAAGT
63 AAATATTTACAT-AATGAAATTTTCTAAAATATTCTAAAAGT
11037636 ATCAAAAATA
Statistics
Matches: 93, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
113 19 0.20
114 31 0.33
115 16 0.17
116 27 0.29
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (113 bp):
TTTTTTTCAAACATAAAAAAATTATTAATAAAAAATAAAATCACAAGTGGCAATTGTATTAAAAA
TATTTACATAATGAAATTTTCTAAAATATTCTAAAAGTGTTTTAGAAT
Found at i:11041762 original size:16 final size:17
Alignment explanation
Indices: 11041732--11041768 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
11041722 CACAAAAACG
11041732 AAAAAACCTATAAAAAT
1 AAAAAACCTATAAAAAT
*
11041749 AAAACACCTA-AAAAAT
1 AAAAAACCTATAAAAAT
11041765 AAAA
1 AAAA
11041769 GGGTTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.73, C:0.14, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAACCTATAAAAAT
Found at i:11041838 original size:6 final size:6
Alignment explanation
Indices: 11041827--11041853 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
11041817 AAAACCTAGG
11041827 AAAACC AAAACC AAAACC AAAACC AAA
1 AAAACC AAAACC AAAACC AAAACC AAA
11041854 TAACACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.30, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:11042438 original size:23 final size:23
Alignment explanation
Indices: 11042396--11042451 Score: 78
Period size: 22 Copynumber: 2.4 Consensus size: 23
11042386 CAAAAATTGG
*
11042396 TATTTATTCTCTTTTTTATTTTTT
1 TATTTATTCTCATTTTTA-TTTTT
11042420 TATTTATTC-CATTTTTATTTTT
1 TATTTATTCTCATTTTTATTTTT
*
11042442 TATTTGTTCT
1 TATTTATTCT
11042452 GTTATTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 13 0.45
23 7 0.24
24 9 0.31
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.75
Consensus pattern (23 bp):
TATTTATTCTCATTTTTATTTTT
Found at i:11042697 original size:123 final size:119
Alignment explanation
Indices: 11042543--11042954 Score: 501
Period size: 122 Copynumber: 3.5 Consensus size: 119
11042533 ATAAAATATG
* * * *
11042543 ATAAAATAAAAAAATCACAAATGGTAATTTTATTTAAAATATTTACATAAAGAAAATTTTTACAA
1 ATAAAA-AATAAAATCACAAGTGGTGATTTTATTTAAAATATTTACATAAAGAAAATTTTTAAAA
11042608 TATTCTAAAAATGTTAGAAATATTTTAAATTTTTTTCAAACATTAAAAAAATGTTATTA
65 TATTCT-AAAATGTTAGAAATATTTTAAATTTTTTTCAAACA-TAAAAAAA--TTATTA
* * * * *
11042667 ATAAAAAATAAAATCACAAGTGGTGATTTTATTGAAAATATTTATACAATG-AGATTTTTAAAAA
1 ATAAAAAATAAAATCACAAGTGGTGATTTTATTTAAAATATTTACATAAAGAAAATTTTT-AAAA
*
11042731 TATTCTTAAAGTGTTAGAAATATTTTATAATTTTTTTCAAACATACAAAAAATTATTA
65 TATTC-TAAAATGTTAGAAATATTTTA-AATTTTTTTCAAACATA-AAAAAATTATTA
* *
11042789 ATAAAAAATAAAATCACAAGTGGTGATTTTATTAAAAATATTTACAT-AATAAAATTTTCTAAAA
1 ATAAAAAATAAAATCACAAGTGGTGATTTTATTTAAAATATTTACATAAAGAAAATTTT-TAAAA
*
11042853 TATTCT-AAA----AG---TATTTTAAAATTTTTTCAAACATAAAAAAATTATTA
65 TATTCTAAAATGTTAGAAATATTTTAAATTTTTTTCAAACATAAAAAAATTATTA
*
11042900 ATAAAAAAT-AAAGCTACAAGTGGTGATTTTA-TTAAAA-ATTTACATAAA-AAAATTT
1 ATAAAAAATAAAATC-ACAAGTGGTGATTTTATTTAAAATATTTACATAAAGAAAATTT
11042955 ATTCTAAAAG
Statistics
Matches: 260, Mismatches: 20, Indels: 31
0.84 0.06 0.10
Matches are distributed among these distances:
109 15 0.06
110 11 0.04
111 37 0.14
112 16 0.06
113 7 0.03
116 2 0.01
120 2 0.01
121 2 0.01
122 72 0.28
123 68 0.26
124 28 0.11
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (119 bp):
ATAAAAAATAAAATCACAAGTGGTGATTTTATTTAAAATATTTACATAAAGAAAATTTTTAAAAT
ATTCTAAAATGTTAGAAATATTTTAAATTTTTTTCAAACATAAAAAAATTATTA
Found at i:11042907 original size:112 final size:113
Alignment explanation
Indices: 11042751--11042963 Score: 337
Period size: 111 Copynumber: 1.9 Consensus size: 113
11042741 GTGTTAGAAA
* *
11042751 TATTTTATAATTTTTTTCAAACATACAAAAAATTATTAATAAAAAATAAA-ATCACAAGTGGTGA
1 TATTTTATAAATTTTTTCAAACATACAAAAAATTATTAATAAAAAATAAAGCT-ACAAGTGGTGA
*
11042815 TTTTATTAAAAATATTTACATAATAAAA-TT-TTCTAAAATATTCTAAAAG
65 TTTTATT-AAAA-ATTTACATAAAAAAATTTATTCTAAAATATTCTAAAAG
11042864 TATTTTA-AAATTTTTTCAAACATA-AAAAAATTATTAATAAAAAATAAAGCTACAAGTGGTGAT
1 TATTTTATAAATTTTTTCAAACATACAAAAAATTATTAATAAAAAATAAAGCTACAAGTGGTGAT
11042927 TTTATTAAAAATTTACATAAAAAAATTTATTCTAAAA
66 TTTATTAAAAATTTACATAAAAAAATTTATTCTAAAA
11042964 GTATCATAAA
Statistics
Matches: 94, Mismatches: 3, Indels: 8
0.90 0.03 0.08
Matches are distributed among these distances:
109 14 0.15
110 6 0.06
111 50 0.53
112 17 0.18
113 7 0.07
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.38
Consensus pattern (113 bp):
TATTTTATAAATTTTTTCAAACATACAAAAAATTATTAATAAAAAATAAAGCTACAAGTGGTGAT
TTTATTAAAAATTTACATAAAAAAATTTATTCTAAAATATTCTAAAAG
Found at i:11044495 original size:19 final size:20
Alignment explanation
Indices: 11044462--11044500 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
11044452 TTATTACACC
*
11044462 TTTGTGAAAAGAAAATACTA
1 TTTGTGAAAAAAAAATACTA
11044482 TTTGT-AAAAAAAAATACTA
1 TTTGTGAAAAAAAAATACTA
11044501 CATAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (20 bp):
TTTGTGAAAAAAAAATACTA
Found at i:11046652 original size:161 final size:161
Alignment explanation
Indices: 11046147--11047948 Score: 1542
Period size: 161 Copynumber: 11.3 Consensus size: 161
11046137 CATTTTGCCC
* * * *
11046147 TTTCCCACATATCAACTGTAGAAACCAAGTTCAATTATTCGGATAAATTTAATATCATGTATT-A
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * *
11046211 AAGCTATCCAAA-TAGTTAAAACAGAGTAACAATAGCAAATTTACA-TTTTGCCTTTTAATGGCA
66 AA-CTATCCAAACT-GTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCA
* * * * *
11046274 TAAAAAATCCTAAATAAAGGTAAACATCAAC-T
129 TAAAAAATCCTAAACAGACGTAAACGTTAACTT
* * * * *** *
11046306 TTTCACACATATCAACTATGGAAACCAAGTTTAATTATTTAAAAAAGTTTAATATCATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * *
11046371 ACCTATCCAAACTATTAACATAGAATAA-AATA-CAAATTTGCATTTTTGCCTTTTAACAGCA-A
66 AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATA
** * *
11046433 AAAAAGTTTTAAATAGACGTAAACGATAACTT
131 AAAAA-TCCTAAACAGACGTAAACGTTAACTT
* * * * * *
11046465 TTTCATACATATCAATTGTAGAAACTAAGTTCAATCATTGGGACAAGTTTATTATTATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * **
11046530 AACTATCTAAACTGTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATAGCATA
66 AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATA
* * * *
11046595 AAAAATCCTAAACAAACATAAATGTTAGCTT
131 AAAAATCCTAAACAGACGTAAACGTTAACTT
* * * * * *
11046626 TTTAACACATATCAACTGTGGAAACTAAGTTCAATCATTCGAATAAATTTAATATCA--TATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * * * * *
11046689 AGCTATTCAAATTGTTAAAATAGAATAATAATAGCAAATTTGTATTTTTACCTATTAATGGCACA
66 AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATA
* * * * *
11046754 AAAAGTCCTAAATAGATGTAAATGATAACTT
131 AAAAATCCTAAACAGACGTAAACGTTAACTT
* * * *
11046785 TTTCACACATATCAACTGTAGAAACTAAGTTCAATCATTTGGACAAATTTATTATCATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * * * * *
11046850 AGCTATCCAAACTATTAAAACAAAACAATAATAGCAAATTTGTATTTTTACCTTTTAACGACATA
66 AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATA
* * *
11046915 AAAAGTCCTAAACAGATGTAAACGTT-AGTT
131 AAAAATCCTAAACAGACGTAAACGTTAACTT
* * * * * *
11046945 ATTTCACATATATCAATTGT-GAAAACCAAGTTCAATTATTTGAACAAGTTTAATATTATGTATT
1 -TTTCACACATATCAACTGTAG-AAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATT
* * * * * * *
11047009 -AAAGCTATCTAAATTGTT-AAATAGGATAATTACAACAAATTTGCATTTTTGCCTTTTAACGGT
64 GAAA-CTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGC
* * *
11047072 A-AAAAAAGTCCTAAATAGACGTAAACATCAACTT
128 ATAAAAAA-TCCTAAACAGACGTAAACGTTAACTT
* * * * * *
11047106 TTTCACACATATCAATTATAGAAACCAAGTTCAATCATTCGGACAAATTTATTGTTATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
** * * *
11047171 AGTTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTTAACGGCAT
66 AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCC-TTTTAACGGCAT
* * * *
11047236 -AAAAGTCTTAAACAGATGTAAACGTTAGCTT
130 AAAAAATCCTAAACAGACGTAAACGTTAACTT
* * * * *
11047267 TTTCATATATATCAACTGTGGAAACCAAGTTCAATTATTCGAACAAGTTTAATATCATGTATT-A
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * * *
11047331 AAGCTATACAAACTGTTTAAATAGAATAATAACAGCAAATTTGTATTTTTGCCTATTAACGGTA-
66 AA-CTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCAT
* * * *
11047395 AAAAAAGTCTTAAATAGACATAAACGATAACTT
130 AAAAAA-TCCTAAACAGACGTAAACGTTAACTT
* * * *
11047428 TTTCACACATATCAACCGTAGAAATCAAGTTCAATCATTGGGACAAGTTTAATATCATATATT-A
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * * *
11047492 AAGCTATCCAAGCTGTTAAAATAGAAAAATAACAACAAATTTTCTATTTTTGCCTATTAACGGCA
66 AA-CTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGC-ATTTTTGCCTTTTAACGGCA
* *
11047557 TAAAAAATCTTAAACAGACGTAAACGATAACTT
129 TAAAAAATCCTAAACAGACGTAAACGTTAACTT
* * * ** *
11047590 TTTCATACATATCAA-TCGTGGAAACCAAGTTCAATAATTTTGATAAGTTTAATATCATGTATTG
1 TTTCACACATATCAACT-GTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTG
** * * * * * * * *
11047654 AAGTTATCCAAATTGTTAAAACATAACAATAACAGTAAATTTGCATTTTTGCATATTAACGGCAT
65 AAACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCAT
* * * *
11047719 CAAAAGTCATAAACAGACATAAAC---AA---
130 AAAAAATCCTAAACAGACGTAAACGTTAACTT
* * * * * *
11047745 ---CA-AC-T-T----TTTCGAATCCAAGTTCAATTATTCAGACAAGTTTAATATCATTTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
* * * * * ** * ** *
11047800 AACTATCAAAACTGTTAAAACAAAACAATAACT-GTAAATTTATATTTTTACCTTTTAACAACAC
66 AACTATCCAAACTGTTAAAATAGAATAATAA-TAGCAAATTTGCATTTTTGCCTTTTAACGGCAT
* * *
11047864 AAAAATTCCTAAA-AGACATAAA-TTGTAACTT
130 AAAAAATCCTAAACAGACGTAAACGT-TAACTT
* * *
11047895 TTTCACATATATCAAC-G-ATGAAAACCAAGTTCATTCATTCGGATAAGTTTAATA
1 TTTCACACATATCAACTGTA-G-AAACCAAGTTCAATCATTCGGACAAGTTTAATA
11047949 ACATAAACTT
Statistics
Matches: 1336, Mismatches: 260, Indels: 93
0.79 0.15 0.06
Matches are distributed among these distances:
144 9 0.01
145 99 0.07
146 1 0.00
147 2 0.00
149 1 0.00
150 1 0.00
151 2 0.00
152 2 0.00
153 2 0.00
154 1 0.00
155 1 0.00
156 1 0.00
157 15 0.01
158 39 0.03
159 288 0.22
160 172 0.13
161 544 0.41
162 148 0.11
163 8 0.01
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (161 bp):
TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTGA
AACTATCCAAACTGTTAAAATAGAATAATAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATA
AAAAATCCTAAACAGACGTAAACGTTAACTT
Found at i:11047170 original size:321 final size:319
Alignment explanation
Indices: 11046147--11047927 Score: 1818
Period size: 320 Copynumber: 5.6 Consensus size: 319
11046137 CATTTTGCCC
* * * * *
11046147 TTTCCCACATATCAACTGTAGAAACCAAGTTCAATTATTCGGATAAATTTAATATCATGTATTAA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* ** * ** *
11046212 AGCTATCCAAA-TAGTTAAAACAGAGTAACAATAGCAAATTTACA-TTTTGCCTTTTAATGGCAT
66 AGCTATCCAAACT-GTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACGGCAT
* * * * * ** * *
11046275 AAAAAATCCTAAATAAAGGTAAACATCAACTTTTCACACATATCAACTATGGAAACCAAGTTTAA
130 AAAAAATCCTAAACAGACGTAAACGTTAGTTTTTCACACATATCAACTGTGGAAACCAAGTTCAA
* * * * * *
11046340 TTATTTAAAAAAGTTTAATATCATGTATTGAACCTATCCAAACTATTAACATAGAATAA-AATA-
195 TTATTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTGTTAA-ATAGAATAATAACAG
* * **
11046403 CAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTTTTAAATAGACGTAAACGATAACTT
259 CAAATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAAC-ATAACTT
* * * * * *
11046465 TTTCATACATATCAATTGTAGAAACTAAGTTCAATCATTGGGACAAGTTTATTATTATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* * * **
11046530 AACTATCTAAACTGTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATAGCATA
66 AGCTATCCAAACTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACGGCATA
* * * * *
11046595 AAAAATCCTAAACAAACATAAATGTTAGCTTTTTAACACATATCAACTGTGGAAACTAAGTTCAA
131 AAAAATCCTAAACAGACGTAAACGTTAG-TTTTTCACACATATCAACTGTGGAAACCAAGTTCAA
* * * * * *
11046660 TCATTCGAATAAATTTAATATCA--TATTGAAGCTATTCAAATTGTTAAAATAGAATAATAATAG
195 TTATTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTGTT-AAATAGAATAATAACAG
* * * * * *
11046723 CAAATTTGTATTTTTACCTATTAATGGCACAAAAAGTCCTAAATAGATGTAAATGATAACTT
259 CAAATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAA-CATAACTT
* *
11046785 TTTCACACATATCAACTGTAGAAACTAAGTTCAATCATTTGGACAAATTTATTATCATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* * *
11046850 AGCTATCCAAACTATTAAAACAAAACAATAATAGCAAATTTGTATTTTTACCTTTTAACGACATA
66 AGCTATCCAAACTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACGGCATA
* * * * *
11046915 AAAAGTCCTAAACAGATGTAAACGTTAGTTATTTCACATATATCAATTGTGAAAACCAAGTTCAA
131 AAAAATCCTAAACAGACGTAAACGTTAGTT-TTTCACACATATCAACTGTGGAAACCAAGTTCAA
* * * * * *
11046980 TTATTTGAACAAGTTTAATATTATGTATTAAAGCTATCTAAATTGTTAAATAGGATAATTACAAC
195 TTATTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTGTTAAATAGAATAATAACAGC
* *
11047045 AAATTTGCATTTTTGCCTTTTAACGGTAAAAAAAGTCCTAAATAGACGTAAACATCAACTT
260 AAATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAACAT-AACTT
* * * *
11047106 TTTCACACATATCAATTATAGAAACCAAGTTCAATCATTCGGACAAATTTATTGTTATGTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* * * *
11047171 AGTTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTTAACGGCAT
66 AGCTATCCAAACTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCC-TTTTAACGGCAT
* * * * *
11047236 -AAAAGTCTTAAACAGATGTAAACGTTAGCTTTTTCATATATATCAACTGTGGAAACCAAGTTCA
130 AAAAAATCCTAAACAGACGTAAACGTTAG-TTTTTCACACATATCAACTGTGGAAACCAAGTTCA
* * * *
11047300 ATTATTCGAACAAGTTTAATATCATGTATTAAAGCTATACAAACTGTTTAAATAGAATAATAACA
194 ATTATTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTG-TTAAATAGAATAATAACA
* * * *
11047365 GCAAATTTGTATTTTTGCCTATTAACGGTAAAAAAAGTCTTAAATAGACATAAACGATAACTT
258 GCAAATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAAC-ATAACTT
* * * * * * *
11047428 TTTCACACATATCAACCGTAGAAATCAAGTTCAATCATTGGGACAAGTTTAATATCATATATTAA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* * * * * *
11047493 AGCTATCCAAGCTGTTAAAATAGAAA-AATAACAACAAATTTTCTATTTTTGCCTATTAACGGCA
66 AGCTATCCAAACTGTTAAAACA-AAACAATAATAGCAAA-TTTGTATTTTTGCCTTTTAACGGCA
* * * *
11047557 TAAAAAATCTTAAACAGACGTAAACGATAACTTTTTCATACATATCAA-TCGTGGAAACCAAGTT
129 TAAAAAATCCTAAACAGACGTAAACG-TTAGTTTTTCACACATATCAACT-GTGGAAACCAAGTT
* * * * * *
11047621 CAATAATTTTG-ATAAGTTTAATATCATGTATTGAAGTTATCCAAATTGTTAAAACATAACAATA
192 CAATTA-TTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTGTT-AAATAGAATAATA
* * ** * * *
11047685 ACAGTAAATTTGCATTTTTGCATATTAACGGCATCAAAAGTCATAAACAGACATAAAC--AA---
255 ACAGCAAATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAACATAACTT
* * * * * * * *
11047745 ---CA-AC-T-T----TTTCGAATCCAAGTTCAATTATTCAGACAAGTTTAATATCATTTATTGA
1 TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
* * * * * ** *
11047800 AACTATCAAAACTGTTAAAACAAAACAATAACT-GTAAATTTATATTTTTACCTTTTAACAACAC
66 AGCTATCCAAACTGTTAAAACAAAACAATAA-TAGCAAATTTGTATTTTTGCCTTTTAACGGCAT
* * * * * * *
11047864 AAAAATTCCTAAA-AGACATAAATTGTAACTTTTTCACATATATCAAC-GATGAAAACCAAGTTC
130 AAAAAATCCTAAACAGACGTAAA-CGTTAGTTTTTCACACATATCAACTG-TGGAAACCAAGTTC
11047927 A
193 A
11047928 TTCATTCGGA
Statistics
Matches: 1243, Mismatches: 193, Indels: 67
0.83 0.13 0.04
Matches are distributed among these distances:
304 1 0.00
305 41 0.03
306 35 0.03
307 65 0.05
311 1 0.00
312 1 0.00
313 2 0.00
314 2 0.00
318 116 0.09
319 49 0.04
320 291 0.23
321 268 0.22
322 201 0.16
323 165 0.13
324 5 0.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (319 bp):
TTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTCGGACAAATTTATTATCATGTATTGA
AGCTATCCAAACTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACGGCATA
AAAAATCCTAAACAGACGTAAACGTTAGTTTTTCACACATATCAACTGTGGAAACCAAGTTCAAT
TATTTGAACAAGTTTAATATCATGTATTGAAGCTATCCAAATTGTTAAATAGAATAATAACAGCA
AATTTGCATTTTTGCCTATTAACGGCAAAAAAAGTCCTAAATAGACGTAAACATAACTT
Found at i:11052452 original size:6 final size:6
Alignment explanation
Indices: 11052441--11052470 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
11052431 GAGGTTTATT
*
11052441 TTTTGC TTTTGC TTTTGC TTTTAC TTTTGC
1 TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC
11052471 ATGCTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.17, G:0.13, T:0.67
Consensus pattern (6 bp):
TTTTGC
Found at i:11053745 original size:143 final size:143
Alignment explanation
Indices: 11053456--11053847 Score: 391
Period size: 143 Copynumber: 2.7 Consensus size: 143
11053446 AAAACATCAC
* * *
11053456 AAATCAAGAAATATTATAAGAGTATGATATGAAAAGTTTCATGAAAATT-TGAGCTCAAAAAAGC
1 AAATCATGAAATATTATAAGAGTA-GATCTGAAAAGTTTCATG-AAATTCTGAGCTCGAAAAAGC
* * * *
11053520 TAAATTACAAAAATACCCCTATTAGGGTATTTTGATAATTTCACACTTTCCAAGATACTACTATG
64 TAAATTACAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTCCAAGATACTACAATG
* *
11053585 ATTCTAAACTGCCAA
129 ATTCTAAACAGCAAA
* * *
11053600 AAATCATGAAATATTACAA-AGTGAGATCTGAAAAGTTTCATGAAATTCTGAGCTCGGAAAGGCT
1 AAATCATGAAATATTATAAGAGT-AGATCTGAAAAGTTTCATGAAATTCTGAGCTCGAAAAAGCT
* **** * *
11053664 AAATTACAAAAATACCCTTATAAGGGTATTTTGGTAATTTCATA-TTTTTTTGGTACTGCAATGA
65 AAATTACAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTCCAAGATACTACAATGA
* *
11053728 TTTTAAA-AGAATAAA
130 TTCTAAACAG--CAAA
* * * * * * *
11053743 AAATCATGAAATATTATAAGATTAAGGTCTG-AAAGATTTTAAGAAAATCTAAGCTTGAAAAAG-
1 AAATCATGAAATATTATAAGAGT-AGATCTGAAAAG-TTTCATGAAATTCTGAGCTCGAAAAAGC
* * *
11053806 TCAAATTATAAAAATACCCTTCTAAGGGCATTTTGGTAATTT
64 T-AAATTACAAAAATACCCTTATAAGGGTATTTTGGTAATTT
11053848 GATCTTTCTT
Statistics
Matches: 206, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
141 1 0.00
142 24 0.12
143 98 0.48
144 83 0.40
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (143 bp):
AAATCATGAAATATTATAAGAGTAGATCTGAAAAGTTTCATGAAATTCTGAGCTCGAAAAAGCTA
AATTACAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTCCAAGATACTACAATGAT
TCTAAACAGCAAA
Found at i:11054098 original size:3 final size:3
Alignment explanation
Indices: 11054092--11054129 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
11054082 TTTTTTTGCT
11054092 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11054130 TAAAGTGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11054320 original size:67 final size:68
Alignment explanation
Indices: 11054160--11054337 Score: 263
Period size: 67 Copynumber: 2.6 Consensus size: 68
11054150 TTAAATCATG
*
11054160 AAAACTTTTTGAATGCTCCTTTAATCAGATA-CCATAAAACTTTGAAAATTAAAAATGCTTAGAA
1 AAAAC-TTTTGAATGCTCCTTTAATCAGA-AGCCATGAAACTTTGAAAATTAAAAATGCTTAGAA
11054224 TCCAA
64 TCCAA
* *
11054229 AAAACTTTTGAATGCTCCTTTAATCAGAAGCCATGAAACTTTGAATATT-AAAATGCTTGGAAT-
1 AAAACTTTTGAATGCTCCTTTAATCAGAAGCCATGAAACTTTGAAAATTAAAAATGCTTAGAATC
11054292 CACA
66 CA-A
* *
11054296 AAAACTTTTGAATGCTCCTCTAATCAGAGGCCATGAAACTTT
1 AAAACTTTTGAATGCTCCTTTAATCAGAAGCCATGAAACTTT
11054338 AAGTGCTCCA
Statistics
Matches: 102, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
66 2 0.02
67 55 0.54
68 40 0.39
69 5 0.05
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (68 bp):
AAAACTTTTGAATGCTCCTTTAATCAGAAGCCATGAAACTTTGAAAATTAAAAATGCTTAGAATC
CAA
Found at i:11054350 original size:19 final size:19
Alignment explanation
Indices: 11054326--11054377 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
11054316 TAATCAGAGG
11054326 CCATGAAACTTTAAGTGCT
1 CCATGAAACTTTAAGTGCT
11054345 CCATGAAACTTTAAGTGCT
1 CCATGAAACTTTAAGTGCT
11054364 CCATGAAACTTTAA
1 CCATGAAACTTTAA
11054378 ATTTGAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (19 bp):
CCATGAAACTTTAAGTGCT
Found at i:11054441 original size:171 final size:165
Alignment explanation
Indices: 11054196--11054671 Score: 668
Period size: 165 Copynumber: 2.8 Consensus size: 165
11054186 AGATACCATA
* * * *
11054196 AAACTTTGAAAATTAAAAATGCTTAGAATC-CAAAAAACTTTTGAATGCTCCTTTAATCAGAAGC
1 AAACTTT--AAATTTAAAATGCTTGGAATCAC-AAAAACTTTTGAATGCTCCTCTAATCAGAGGC
* *
11054260 CATGAAACTTTGAATATTAAAATGCTTGGAATCACAAAAACTTTTGAATGCTCCTCTAATCAGAG
63 CATGAAACTTTGAATATTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATTAGAG
**
11054325 GCCATGAAACTTTAAGTGCTC-CATGAAACTTTAAGTGCTCCATG
128 GCCATGAAACTTTAAGTGCTCTC-T--AA-TCGAAG-GCT--ATG
* *
11054369 AAACTTTAAATTTGAAATGCTTGGAATCACAAAAACTTTTGAATGTTCCTCTAATCAGAGGCCAT
1 AAACTTTAAATTTAAAATGCTTGGAATCACAAAAACTTTTGAATGCTCCTCTAATCAGAGGCCAT
**
11054434 GAAACTTTGAATATTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATTAGATACC
66 GAAACTTTGAATATTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATTAGAGGCC
* * *
11054499 ACGAAACTTTGAGTGCTCTCTAATCGGAGGCTATG
131 ATGAAACTTTAAGTGCTCTCTAATCGAAGGCTATG
*
11054534 AAACTTTAAATTTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATCAGAGGCCAT
1 AAACTTTAAATTTAAAATGCTTGGAATCACAAAAACTTTTGAATGCTCCTCTAATCAGAGGCCAT
* * * *
11054599 GAAACTTTGAATATTAAAAAGCTTGGAATCATAAAAAATTTTTAATGTTCCTCTAATTAGAGGCC
66 GAAACTTTGAATATTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATTAGAGGCC
11054664 ATGAAACT
131 ATGAAACT
11054672 AGGGACGGCA
Statistics
Matches: 276, Mismatches: 25, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
165 131 0.47
167 3 0.01
168 3 0.01
169 2 0.01
171 128 0.46
172 2 0.01
173 7 0.03
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (165 bp):
AAACTTTAAATTTAAAATGCTTGGAATCACAAAAACTTTTGAATGCTCCTCTAATCAGAGGCCAT
GAAACTTTGAATATTAAAATGCTTGGAATCATAAAAACTTTTGAATGCTCCTCTAATTAGAGGCC
ATGAAACTTTAAGTGCTCTCTAATCGAAGGCTATG
Done.