Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 48 of 117
Found at i:11201816 original size:36 final size:35
Alignment explanation
Indices: 11201776--11201843 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
11201766 AATAAATTTA
* **
11201776 AAGAAAAAGTAAGAAGTTAAAAAAAAAAAAAAAACC
1 AAGAAAAAGGAA-AAGGCAAAAAAAAAAAAAAAACC
*
11201812 AAGAAAAAGGAAAAGGCCAAAAAAAAAAAAAA
1 AAGAAAAAGGAAAAGGCAAAAAAAAAAAAAAA
11201844 GAACGACAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 17 0.61
36 11 0.39
ACGTcount: A:0.76, C:0.06, G:0.13, T:0.04
Consensus pattern (35 bp):
AAGAAAAAGGAAAAGGCAAAAAAAAAAAAAAAACC
Found at i:11202107 original size:11 final size:12
Alignment explanation
Indices: 11202091--11202115 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11202081 TTAAAAGATT
11202091 AAAAAACTAAAA
1 AAAAAACTAAAA
11202103 AAAAAACTAAAA
1 AAAAAACTAAAA
11202115 A
1 A
11202116 GCCAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAAAACTAAAA
Found at i:11202113 original size:20 final size:20
Alignment explanation
Indices: 11202090--11202133 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
11202080 GTTAAAAGAT
*
11202090 TAAAAAACTAAAAAA-AAAA
1 TAAAAAACCAAAAAATAAAA
*
11202109 CTAAAAAGCCAAAAAATAAAA
1 -TAAAAAACCAAAAAATAAAA
11202130 TAAA
1 TAAA
11202134 GTTGCGACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.11
Consensus pattern (20 bp):
TAAAAAACCAAAAAATAAAA
Found at i:11202522 original size:13 final size:14
Alignment explanation
Indices: 11202484--11202519 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
11202474 TTTGTTTCGA
11202484 AAAAAATAATTTTT
1 AAAAAATAATTTTT
11202498 AAAAAATAATTTTT
1 AAAAAATAATTTTT
*
11202512 GAAAAATA
1 AAAAAATA
11202520 TTTATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
AAAAAATAATTTTT
Found at i:11202668 original size:25 final size:25
Alignment explanation
Indices: 11202639--11202702 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
11202629 TTAATATAAC
11202639 TATTAAAATATTAA-AAGTTATTTAT
1 TATTAAAATATTAAGAA-TTATTTAT
11202664 TATTAAAATA-TAATGAATTATTTAT
1 TATTAAAATATTAA-GAATTATTTAT
* *
11202689 TACTAAATTATTAA
1 TATTAAAATATTAA
11202703 TATTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 3 0.09
25 26 0.76
26 5 0.15
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (25 bp):
TATTAAAATATTAAGAATTATTTAT
Found at i:11202720 original size:18 final size:19
Alignment explanation
Indices: 11202694--11202745 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
11202684 TTTATTACTA
11202694 AATTATTAATATTAAAAAAT
1 AATT-TTAATATTAAAAAAT
** *
11202714 AA-TTTAAT-TTTTATAAT
1 AATTTTAATATTAAAAAAT
11202731 AATTTTAATATTAAA
1 AATTTTAATATTAAA
11202746 TGTTATGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
17 8 0.32
18 11 0.44
19 4 0.16
20 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTTTAATATTAAAAAAT
Found at i:11202727 original size:39 final size:36
Alignment explanation
Indices: 11202659--11202745 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 36
11202649 TTAAAAGTTA
* * *
11202659 TTTATTATTAAAATATAATGAATTATTTATTACTAAAT
1 TTTAATATTAAAAAATAATGAATTATTTA-TAAT-AAT
*
11202697 TATTAATATTAAAAAATAATTTAATT-TTTATAATAAT
1 T-TTAATATTAAAAAATAA-TGAATTATTTATAATAAT
11202734 TTTAATATTAAA
1 TTTAATATTAAA
11202746 TGTTATGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
36 11 0.26
37 4 0.09
38 4 0.09
39 19 0.44
40 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (36 bp):
TTTAATATTAAAAAATAATGAATTATTTATAATAAT
Found at i:11202833 original size:18 final size:18
Alignment explanation
Indices: 11202795--11203009 Score: 108
Period size: 18 Copynumber: 11.7 Consensus size: 18
11202785 ATTATTCTTT
* *
11202795 ATATTACTTATTAATAAA
1 ATATTATTTATTAATATA
* *
11202813 ATATAATATTATTTAT-TA
1 ATATTAT-TTATTAATATA
*
11202831 ATAATA-TTATTAATATA
1 ATATTATTTATTAATATA
*
11202848 TTA-TATTTA-T-AT-T-
1 ATATTATTTATTAATATA
*
11202861 ATATTATTTATTAATATT
1 ATATTATTTATTAATATA
* *
11202879 ACATTGTTTATTCATATATTA
1 ATATTATTTATT-A-ATA-TA
*
11202900 TTATCATATTTATTAATTAAATTA
1 ATAT--TATTTATTAA-T--A-TA
*
11202924 ATAATATTTATT-AT-T-
1 ATATTATTTATTAATATA
*
11202939 GTATTATTTATTAATATA
1 ATATTATTTATTAATATA
11202957 ATATTATTTATTAATATATTATA
1 ATATTATTTA-T--TA-A-TATA
11202980 ATATTATTTATTAATATA
1 ATATTATTTATTAATATA
*
11202998 ATAATATTTATT
1 ATATTATTTATT
11203010 TATTAAAACA
Statistics
Matches: 152, Mismatches: 21, Indels: 48
0.69 0.10 0.22
Matches are distributed among these distances:
13 2 0.01
14 7 0.05
15 13 0.09
16 15 0.10
17 9 0.06
18 44 0.29
19 10 0.07
20 6 0.04
21 7 0.05
22 12 0.08
23 21 0.14
24 6 0.04
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (18 bp):
ATATTATTTATTAATATA
Found at i:11202946 original size:33 final size:33
Alignment explanation
Indices: 11202812--11202978 Score: 97
Period size: 33 Copynumber: 5.3 Consensus size: 33
11202802 TTATTAATAA
* *
11202812 AATATAATATT-ATTTAT-TAATAATA-TTATT
1 AATATATTATTAATTAATATAATAATATTTATT
* * *
11202842 AATATATTA-T-ATTTATATTATATTATTTATT
1 AATATATTATTAATTAATATAATAATATTTATT
* * * *
11202873 AATAT-TACATT-GTTTAT-TCAT-ATA-TTATT
1 AATATAT-TATTAATTAATATAATAATATTTATT
11202902 -ATCATATTTATTAATTAAAT-TAATAATATTTATT
1 AAT-ATA-TTATTAATT-AATATAATAATATTTATT
* * * *
11202936 ATTGTATTATTTATTAATATAATATTATTTATT
1 AATATATTATTAATTAATATAATAATATTTATT
11202969 AATATATTAT
1 AATATATTAT
11202979 AATATTATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 23
0.73 0.12 0.16
Matches are distributed among these distances:
28 2 0.02
29 14 0.13
30 20 0.19
31 17 0.16
32 14 0.13
33 32 0.30
34 7 0.07
35 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (33 bp):
AATATATTATTAATTAATATAATAATATTTATT
Found at i:11202948 original size:15 final size:15
Alignment explanation
Indices: 11202818--11203014 Score: 88
Period size: 15 Copynumber: 12.9 Consensus size: 15
11202808 ATAAAATATA
*
11202818 ATATTATTTATTAATA
1 ATATTATTTATT-ATT
*
11202834 ATATTATTAATATATT
1 ATATTATTTAT-TATT
11202850 ATATTTATATTA-TATT
1 ATA-TTAT-TTATTATT
*
11202866 AT-TTA-TTAATATT
1 ATATTATTTATTATT
* *
11202879 ACATTGTTTATTCA-T
1 ATATTATTTATT-ATT
11202894 ATATTA-TTATCATATT
1 ATATTATTTAT--TATT
* *
11202910 -TATTAATTA-AATT
1 ATATTATTTATTATT
*
11202923 AATAATATTTATTATT
1 -ATATTATTTATTATT
*
11202939 GTATTATTTATTAATAT
1 ATATTATTTATT-AT-T
*
11202956 AATATTATTTATTAAT
1 -ATATTATTTATTATT
*
11202972 ATATTATAATATTATT
1 ATATTAT-TTATTATT
* * *
11202988 -TATTA-ATATAATA
1 ATATTATTTATTATT
11203001 ATATTTATTTATTA
1 ATA-TTATTTATTA
11203015 AAACAATATT
Statistics
Matches: 138, Mismatches: 22, Indels: 42
0.68 0.11 0.21
Matches are distributed among these distances:
12 3 0.02
13 14 0.10
14 11 0.08
15 47 0.34
16 43 0.31
17 7 0.05
18 13 0.09
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.57
Consensus pattern (15 bp):
ATATTATTTATTATT
Found at i:11202968 original size:78 final size:74
Alignment explanation
Indices: 11202829--11203014 Score: 218
Period size: 78 Copynumber: 2.5 Consensus size: 74
11202819 TATTATTTAT
* * * *
11202829 TAATAATATT-ATTAATAT-ATTATATTTA-TATTATATTATTTATTAATATTACATTGTTTATT
1 TAATATTATTAATTAATATAATAATATTTATTATTATATTATTTATTAATATAACATTATTTATT
11202891 CATATATTATTA
66 -A-ATA-TATTA
* * *
11202903 TCATATTTATTAATTAA-ATTAATAATATTTATTATTGTATTATTTATTAATATAATATTATTTA
1 TAATA-TTATTAATTAATA-TAATAATATTTATTATTATATTATTTATTAATATAACATTATTTA
11202967 TTAATATATTA
64 TTAATATATTA
*
11202978 TAATATTATTTATTAATATAATAATATTTATTTATTA
1 TAATATTATTAATTAATATAATAATATTTA-TTATTA
11203015 AAACAATATT
Statistics
Matches: 95, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
74 26 0.27
75 20 0.21
76 9 0.09
77 10 0.11
78 30 0.32
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (74 bp):
TAATATTATTAATTAATATAATAATATTTATTATTATATTATTTATTAATATAACATTATTTATT
AATATATTA
Found at i:11202997 original size:41 final size:41
Alignment explanation
Indices: 11202795--11203009 Score: 192
Period size: 41 Copynumber: 5.3 Consensus size: 41
11202785 ATTATTCTTT
* * *
11202795 ATATTACTTATTAATAAAATATAATATTATTTATT-A-ATA
1 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
* * *
11202834 ATATTATTAATATATTATATTTATATTATATTATTTATTAATATT
1 ATATTATTTAT-TAATATA-TTATA--ATATTATTTATTAATATA
* * * *
11202879 ACATTGTTTATTCATATATTATTATCA-TATTTATTAAT-TA
1 ATATTATTTATTAATATATTATAAT-ATTATTTATTAATATA
* * * **
11202919 A-ATTA-ATAAT-ATTTATTATTGTATTATTTATTAATATA
1 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
11202957 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
1 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
*
11202998 ATAATATTTATT
1 ATATTATTTATT
11203010 TATTAAAACA
Statistics
Matches: 140, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
36 1 0.01
37 21 0.15
38 6 0.04
39 16 0.11
40 10 0.07
41 53 0.38
42 1 0.01
43 16 0.11
44 6 0.04
45 10 0.07
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (41 bp):
ATATTATTTATTAATATATTATAATATTATTTATTAATATA
Found at i:11203026 original size:18 final size:21
Alignment explanation
Indices: 11202795--11203030 Score: 112
Period size: 23 Copynumber: 11.5 Consensus size: 21
11202785 ATTATTCTTT
* *
11202795 ATATTACTTATTAATAAAATATA
1 ATATTATTTATTAAT-ATA-ATA
11202818 ATATTATTTATT-A-ATAATA
1 ATATTATTTATTAATATAATA
* * * *
11202837 TTATTAATATATTATATTTATATT
1 ATATT-ATTTATTA-ATATA-ATA
11202861 ATATTATTTATTAATAT--T-
1 ATATTATTTATTAATATAATA
* * * *
11202879 ACATTGTTTATTCATATATTA
1 ATATTATTTATTAATATAATA
*
11202900 TTATCATATTTATTAAT-TAAATTA
1 ATAT--TATTTATTAATAT-AA-TA
*
11202924 ATAATATTTA-T--TAT--T-
1 ATATTATTTATTAATATAATA
*
11202939 GTATTATTTATT-A-AT-ATA
1 ATATTATTTATTAATATAATA
11202957 ATATTATTTATTAATATATTATA
1 ATATTATTTATTAATATA--ATA
11202980 ATATTATTTATTAATATAATA
1 ATATTATTTATTAATATAATA
*
11203001 ATATTTATTTATT-A-A-AACA
1 ATA-TTATTTATTAATATAATA
11203020 ATATTATTTAT
1 ATATTATTTAT
11203031 AAGTAAAATT
Statistics
Matches: 167, Mismatches: 23, Indels: 51
0.69 0.10 0.21
Matches are distributed among these distances:
15 8 0.05
16 4 0.02
17 1 0.01
18 33 0.20
19 16 0.10
20 13 0.08
21 10 0.06
22 21 0.13
23 51 0.31
24 10 0.06
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (21 bp):
ATATTATTTATTAATATAATA
Found at i:11203281 original size:92 final size:94
Alignment explanation
Indices: 11203111--11203282 Score: 222
Period size: 92 Copynumber: 1.9 Consensus size: 94
11203101 TTTCATTTTT
* * * * * * *
11203111 AAATTCGTAAGATAATTTTTAAAAAAATGATCTTATTTTTTATTGATCAATAAATTATTTTTTAT
1 AAATCCGTAAAATAATTTTTAAAAAAATGATCTCATTTTTCATTAATCAATAAAATACTTTTTAT
*
11203176 TCACTAATCAATTTTCTATCATATAAACA
66 TAACTAATCAATTTTCTATCATATAAACA
* *
11203205 AAATCCGTAAAATAA-TTTT-AAAAAATGATCTCATTTTTCATTAATTAATAAAATACTTTTTGT
1 AAATCCGTAAAATAATTTTTAAAAAAATGATCTCATTTTTCATTAATCAATAAAATACTTTTTAT
* *
11203268 TAATTAATTAATTTT
66 TAACTAATCAATTTT
11203283 TTATTAAATA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
92 49 0.74
93 4 0.06
94 13 0.20
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (94 bp):
AAATCCGTAAAATAATTTTTAAAAAAATGATCTCATTTTTCATTAATCAATAAAATACTTTTTAT
TAACTAATCAATTTTCTATCATATAAACA
Found at i:11205120 original size:23 final size:24
Alignment explanation
Indices: 11205090--11205162 Score: 85
Period size: 26 Copynumber: 2.9 Consensus size: 24
11205080 TATATAAAAA
*
11205090 ATTTATTTATTAATCAAAT-TATG
1 ATTTATTTATTAATAAAATATATG
*
11205113 ATTTATTTCATTAATAAAATAATATT
1 ATTTATTT-ATTAATAAAAT-ATATG
11205139 ATTTAATTTATTAATAATAATATA
1 ATTT-ATTTATTAATAA-AATATA
11205163 ATATTAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.19
24 10 0.23
26 18 0.42
27 7 0.16
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (24 bp):
ATTTATTTATTAATAAAATATATG
Found at i:11205167 original size:26 final size:24
Alignment explanation
Indices: 11205056--11205167 Score: 79
Period size: 26 Copynumber: 4.5 Consensus size: 24
11205046 AATTTTTATT
*
11205056 AATA-AATAATTTATTTA-AAATAA
1 AATATAAT-ATTTATTTATTAATAA
* *
11205079 ATATATAAAAAATTTATTTATTAATCA
1 A-ATAT--AATATTTATTTATTAATAA
11205106 AAT-T-ATGATTTATTTCATTAATAA
1 AATATAAT-ATTTATTT-ATTAATAA
*
11205130 AATAATATTATTTAATTTATTAATAA
1 AAT-ATAATATTT-ATTTATTAATAA
11205156 TAATATAATATT
1 -AATATAATATT
11205168 AAATATAAAG
Statistics
Matches: 70, Mismatches: 7, Indels: 21
0.71 0.07 0.21
Matches are distributed among these distances:
22 1 0.01
23 9 0.13
24 13 0.19
25 1 0.01
26 31 0.44
27 15 0.21
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (24 bp):
AATATAATATTTATTTATTAATAA
Found at i:11211948 original size:47 final size:47
Alignment explanation
Indices: 11211897--11211987 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
11211887 TCTTAGGATT
* * * *
11211897 TGAATCGGTTAAAAGGACATTGCAGCAATC-GAGTGGCTTTCATGATA
1 TGAATCGATTAAAAGGACATGGCAACAA-CAAAGTGGCTTTCATGATA
**
11211944 TGAATCGATTAAGGGGACATGGCAACAACAAAGTGGCTTTCATG
1 TGAATCGATTAAAAGGACATGGCAACAACAAAGTGGCTTTCATG
11211988 GCAGAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
46 1 0.03
47 36 0.97
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (47 bp):
TGAATCGATTAAAAGGACATGGCAACAACAAAGTGGCTTTCATGATA
Found at i:11215376 original size:20 final size:20
Alignment explanation
Indices: 11215353--11215408 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
11215343 ATTATTTTTA
11215353 CATGATATTTTATATTATTG
1 CATGATATTTTATATTATTG
*
11215373 CATGATATTTTATATGATTG
1 CATGATATTTTATATTATTG
* *
11215393 CTTGATGTTTT-TATTA
1 CATGATATTTTATATTA
11215409 CATGATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 4 0.12
20 28 0.88
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.55
Consensus pattern (20 bp):
CATGATATTTTATATTATTG
Found at i:11215566 original size:42 final size:43
Alignment explanation
Indices: 11215517--11215600 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
11215507 TTTAAAATTT
11215517 ACATGATTGGTAATTA-TTATAGGATTATTAATATATTTATTG
1 ACATGATTGGTAATTATTTATAGGATTATTAATATATTTATTG
** * *
11215559 ACATGATTTTTAATTATTTGTATGATTATTAATATATTTATT
1 ACATGATTGGTAATTATTTATAGGATTATTAATATATTTATT
11215601 TGTGTGATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 14 0.38
43 23 0.62
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (43 bp):
ACATGATTGGTAATTATTTATAGGATTATTAATATATTTATTG
Found at i:11216782 original size:26 final size:26
Alignment explanation
Indices: 11216732--11216782 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
11216722 TAACTCTTTT
* * **
11216732 TATTGTTCCTTGTATATATTGTGTTA
1 TATTGTTCATTATATATATCATGTTA
11216758 TATTGTTCATTATATATATCATGTT
1 TATTGTTCATTATATATATCATGTT
11216783 TACTAACATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.57
Consensus pattern (26 bp):
TATTGTTCATTATATATATCATGTTA
Found at i:11217573 original size:16 final size:17
Alignment explanation
Indices: 11217554--11217587 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
11217544 CTCCTTTTAA
11217554 TTTTAATTTC-TTTAGT
1 TTTTAATTTCTTTTAGT
*
11217570 TTTTTATTTCTTTTAGT
1 TTTTAATTTCTTTTAGT
11217587 T
1 T
11217588 AAGTTATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (17 bp):
TTTTAATTTCTTTTAGT
Found at i:11220516 original size:21 final size:21
Alignment explanation
Indices: 11220490--11220535 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
11220480 TTTTTTATGG
*
11220490 TTTTA-TTTATTTATTTATTTA
1 TTTTATTTTA-TTATTTATATA
11220511 TTTTATTTTATTATTTATATA
1 TTTTATTTTATTATTTATATA
11220532 TTTT
1 TTTT
11220536 TAAAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTATTTTATTATTTATATA
Found at i:11220517 original size:5 final size:4
Alignment explanation
Indices: 11220491--11220534 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
11220481 TTTTTATGGT
*
11220491 TTTA TTTA TTTA TTTA TTTA TTTTA TTT- TATTA TTTA TATA TTT
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA T-TTA TTTA TTTA TTT
11220535 TTAAAATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 1 0.03
4 29 0.83
5 5 0.14
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:11221416 original size:149 final size:146
Alignment explanation
Indices: 11221214--11221675 Score: 445
Period size: 149 Copynumber: 3.1 Consensus size: 146
11221204 GCAACCCAAG
* * * *
11221214 TTTTCAAAATTGGGAATTTTAAAGTTTACTAGCCTTTTTTCAAAGGA-ACTTTTCAAAATTAAGA
1 TTTTCAAAATTGAGATTTTTAAAGTTTCCTAGCCTCTTTT-AAAGGAGA-TTTTCAAAATTAAGA
* *
11221278 TTATTTTTAAAGTTTCATAACCTTTTTTTAGAGGAGCTTTTCAAAATTGAAAATTTTAAAGTTTC
64 TTATTTTTAAAGTTTC-TAGCC-TTTTTTAGAGGAGTTTTTCAAAATTGAAAATTTTAAAGTTTC
* *
11221343 CTAACCTTTTTTAAAAGG-GT
127 CTAGCCTTTTTT-AGAGGAGT
*
11221363 TTTTCAAAATTGAGATTTTTAAAGTTTCCTAGTCTCTTTTAAGAGGAGATTTTCAAAATTAAGAT
1 TTTTCAAAATTGAGATTTTTAAAGTTTCCTAGCCTCTTTTAA-AGGAGATTTTCAAAATTAAGAT
* * * * *
11221428 CATTTTTAAAGTTTCTTAGCCTCTCTTTA-AAGAGTTTTTTAAAATT-ATAATTTTTAAAGTTT-
65 TATTTTTAAAGTTTC-TAGCCT-TTTTTAGAGGAGTTTTTCAAAATTGA-AAATTTTAAAGTTTC
* *
11221490 TTAGCCTTATTTAGAGGAGT
127 CTAGCCTTTTTTAGAGGAGT
* * * * * * * **
11221510 TTTTCAACATTAAGATCATTTTTAAAGTTTCCTACCCTCTTTTTATAGTAGTTTTTCAAATTTTG
1 TTTTCAAAATT--GA-GATTTTTAAAGTTTCCTAGCCTC-TTTTAAAGGAGATTTTCAAAATTAA
** * * *
11221575 GA-T-TTTAAAAATTTTCTAGCC-TTTTTAGAGGAGTTTTTCAAAATTGAGAGTTTTAAAGTTTC
62 GATTATTTTTAAAGTTTCTAGCCTTTTTTAGAGGAGTTTTTCAAAATTGAAAATTTTAAAGTTTC
*
11221637 GTAGCCTCTTTTTAGAGGAGT
127 CTAGCCT-TTTTTAGAGGAGT
* *
11221658 TTTTCAAAGTTGATATTT
1 TTTTCAAAATTGAGATTT
11221676 CTTTTAAAAG
Statistics
Matches: 259, Mismatches: 41, Indels: 30
0.78 0.12 0.09
Matches are distributed among these distances:
145 9 0.03
146 33 0.13
147 34 0.13
148 61 0.24
149 80 0.31
150 37 0.14
151 5 0.02
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.46
Consensus pattern (146 bp):
TTTTCAAAATTGAGATTTTTAAAGTTTCCTAGCCTCTTTTAAAGGAGATTTTCAAAATTAAGATT
ATTTTTAAAGTTTCTAGCCTTTTTTAGAGGAGTTTTTCAAAATTGAAAATTTTAAAGTTTCCTAG
CCTTTTTTAGAGGAGT
Found at i:11221496 original size:47 final size:50
Alignment explanation
Indices: 11221214--11221721 Score: 343
Period size: 49 Copynumber: 10.2 Consensus size: 50
11221204 GCAACCCAAG
** **
11221214 TTTTCAAAATTGGGAA-TTTTAAAGTTTAC-TAGCCT-TTTTTCA-AAGGAAC
1 TTTTCAAAATTGATAATTTTTAAAGTTT-CTTAGCCTCTTTTT-AGAA-GAGT
* * * * * *
11221263 TTTTCAAAATTAAGATTATTTTTAAAGTTTCATAACCTTTTTTTAGAGGAGC
1 TTTTCAAAATT--GATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* * * * *
11221315 TTTTCAAAATTGA-AAATTTTAAAGTTTCCTAACCT-TTTTTAAAAGGGT
1 TTTTCAAAATTGATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* * * * * *
11221363 TTTTCAAAATTGA-GATTTTTAAAGTTTCCTAGTCTCTTTTAAGAGGAGA
1 TTTTCAAAATTGATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* *
11221412 TTTTCAAAATTAAGATCATTTTTAAAGTTTCTTAGCCTCTCTTTA-AAGAGT
1 TTTTCAAAATT--GATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* * *
11221463 TTTTTAAAATT-ATAATTTTTAAAGTTT-TTAGCCT-TATTTAGAGGAGT
1 TTTTCAAAATTGATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* * * * *
11221510 TTTTCAACATTAAGATCATTTTTAAAGTTTCCTACCCTCTTTTTA-TAGTAGT
1 TTTTCAAAATT--GATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAG-AGT
* * * * *
11221562 TTTTC-AAATT-TTGGATTTTAAAAATTT-TCTAG-C-CTTTTTAGAGGAGT
1 TTTTCAAAATTGAT-AATTTTTAAAGTTTCT-TAGCCTCTTTTTAGAAGAGT
* * * *
11221609 TTTTCAAAATTGA-GAGTTTTAAAGTTTCGTAGCCTCTTTTTAGAGGAGT
1 TTTTCAAAATTGATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
* * *
11221658 TTTTCAAAGTTGATATTTCTTTTAAAAGTTT-TGAAGCCTCTTTTTAGAAGAGT
1 TTTTCAAAATTGATA-AT-TTTT-AAAGTTTCT-TAGCCTCTTTTTAGAAGAGT
*
11221711 TTTTTAAAATT
1 TTTTCAAAATT
11221722 TAAGTTTTCA
Statistics
Matches: 365, Mismatches: 64, Indels: 56
0.75 0.13 0.12
Matches are distributed among these distances:
46 5 0.01
47 50 0.14
48 64 0.18
49 88 0.24
50 17 0.05
51 29 0.08
52 72 0.20
53 40 0.11
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (50 bp):
TTTTCAAAATTGATAATTTTTAAAGTTTCTTAGCCTCTTTTTAGAAGAGT
Found at i:11224092 original size:7 final size:7
Alignment explanation
Indices: 11224077--11224411 Score: 123
Period size: 7 Copynumber: 51.3 Consensus size: 7
11224067 TTCCCCATGC
11224077 AAACCCT
1 AAACCCT
*
11224084 AAACTCT
1 AAACCCT
11224091 AAA-CCT
1 AAACCCT
11224097 AAA-CCT
1 AAACCCT
*
11224103 TAACCCT
1 AAACCCT
11224110 AAACCCT
1 AAACCCT
* *
11224117 ATATCCT
1 AAACCCT
*
11224124 AAA-CTT
1 AAACCCT
11224130 AAA-CCT
1 AAACCCT
*
11224136 AAA-CTT
1 AAACCCT
11224142 AAA-CCT
1 AAACCCT
*
11224148 TAACCCT
1 AAACCCT
* *
11224155 -AATCGT
1 AAACCCT
11224161 AAA-CC-
1 AAACCCT
11224166 AAACCCT
1 AAACCCT
**
11224173 AAACTTT
1 AAACCCT
11224180 AAACCCT
1 AAACCCT
11224187 AAACCC-
1 AAACCCT
* *
11224193 AAATCTT
1 AAACCCT
**
11224200 AAAATCT
1 AAACCCT
11224207 -AA-CCT
1 AAACCCT
*
11224212 AATCCCT
1 AAACCCT
11224219 -AACCCT
1 AAACCCT
11224225 AAACCCT
1 AAACCCT
11224232 AAA-CCT
1 AAACCCT
11224238 -AA-CCT
1 AAACCCT
11224243 AAACCCT
1 AAACCCT
*
11224250 -AA-GC-
1 AAACCCT
*
11224254 AAAACCT
1 AAACCCT
11224261 AAACCCT
1 AAACCCT
* *
11224268 -AATCTT
1 AAACCCT
*
11224274 AAATCCT
1 AAACCCT
11224281 AAACCCT
1 AAACCCT
11224288 -AACCCT
1 AAACCCT
* *
11224294 GAACCTT
1 AAACCCT
* *
11224301 AAAATCTT
1 -AAACCCT
*
11224309 AAACCCG
1 AAACCCT
*
11224316 AAA-CTT
1 AAACCCT
* *
11224322 CAACCAT
1 AAACCCT
11224329 -AACCCT
1 AAACCCT
*
11224335 -AACCTT
1 AAACCCT
11224341 AAACCCTT
1 AAACCC-T
*
11224349 AAAGCCT
1 AAACCCT
11224356 AAACCCCT
1 AAA-CCCT
*
11224364 AAAGCCTT
1 AAA-CCCT
*
11224372 AAA-GCT
1 AAACCCT
11224378 AAA-CCT
1 AAACCCT
*
11224384 AATCCCT
1 AAACCCT
*
11224391 AAAGCC-
1 AAACCCT
11224397 -AACCCT
1 AAACCCT
11224403 AAACCCT
1 AAACCCT
11224410 AA
1 AA
11224412 GCCAAGCCCT
Statistics
Matches: 246, Mismatches: 58, Indels: 48
0.70 0.16 0.14
Matches are distributed among these distances:
5 17 0.07
6 87 0.35
7 119 0.48
8 23 0.09
ACGTcount: A:0.42, C:0.34, G:0.02, T:0.21
Consensus pattern (7 bp):
AAACCCT
Found at i:11224100 original size:6 final size:6
Alignment explanation
Indices: 11224081--11224299 Score: 95
Period size: 6 Copynumber: 34.5 Consensus size: 6
11224071 CCATGCAAAC
* * *
11224081 CCTAAA CTCTAAA CCTAAA CCTTAAC CCTAAA CCCTATAT CCTAAA CTTAAA
1 CCTAAA C-CTAAA CCTAAA CC-TAAA CCTAAA -CCTA-AA CCTAAA CCTAAA
* * * * *
11224133 CCTAAA CTTAAA CCTTAAC CCTAAT CGTAAA CC-AAA CCCTAAA CTTTAAA
1 CCTAAA CCTAAA CC-TAAA CCTAAA CCTAAA CCTAAA -CCTAAA C-CTAAA
* * * * *
11224183 CCCTAAA CCCAAA TCTTAAAA TCT-AA CCTAATC CCTAAC CCTAAA CCCTAAA
1 -CCTAAA CCTAAA -CCT-AAA CCTAAA CCTAA-A CCTAAA CCTAAA -CCTAAA
* * * *
11224235 CCT-AA CCTAAA CCCT-AA GCAAAA CCTAAA CCCTAAT CTTAAA TCCTAAA
1 CCTAAA CCTAAA -CCTAAA CCTAAA CCTAAA -CCTAAA CCTAAA -CCTAAA
* *
11224284 CCCTAAC CCTGAA CCT
1 -CCTAAA CCTAAA CCT
11224300 TAAAATCTTA
Statistics
Matches: 159, Mismatches: 35, Indels: 38
0.69 0.15 0.16
Matches are distributed among these distances:
5 13 0.08
6 75 0.47
7 66 0.42
8 5 0.03
ACGTcount: A:0.42, C:0.34, G:0.01, T:0.22
Consensus pattern (6 bp):
CCTAAA
Found at i:11224130 original size:26 final size:26
Alignment explanation
Indices: 11224078--11224303 Score: 103
Period size: 26 Copynumber: 8.6 Consensus size: 26
11224068 TCCCCATGCA
*
11224078 AACCCTAAACTCTAAACCTAAACCTT
1 AACCCTAAACCCTAAACCTAAACCTT
*
11224104 AACCCTAAACCCTATATCCTAAA-CTT
1 AACCCTAAACCCTA-AACCTAAACCTT
* * * *
11224130 AAACCTAAA-CTTAAACCTTAACCCT
1 AACCCTAAACCCTAAACCTAAACCTT
* * *
11224155 AATCGTAAA-CC-AAACCCTAAACTTT
1 AACCCTAAACCCTAAA-CCTAAACCTT
* *
11224180 AAACCCTAAACCC-AAATCTTAAAATCTAACCT
1 -AACCCTAAACCCTAAA-CCT-AAA-C---CTT
11224212 AATCCCT-AACCCTAAACCCTAAACC-T
1 AA-CCCTAAACCCTAAA-CCTAAACCTT
* * *
11224238 AA-CCTAAACCCT-AAGCAAAACCTA
1 AACCCTAAACCCTAAACCTAAACCTT
* * *
11224262 AACCCT-AATCTTAAATCCTAAACCCT
1 AACCCTAAACCCTAAA-CCTAAACCTT
* *
11224288 AACCCTGAACCTTAAA
1 AACCCTAAACCCTAAA
11224304 ATCTTAAACC
Statistics
Matches: 151, Mismatches: 31, Indels: 35
0.70 0.14 0.16
Matches are distributed among these distances:
23 6 0.04
24 20 0.13
25 31 0.21
26 46 0.30
27 23 0.15
28 3 0.02
29 1 0.01
30 1 0.01
31 10 0.07
32 10 0.07
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.22
Consensus pattern (26 bp):
AACCCTAAACCCTAAACCTAAACCTT
Found at i:11224138 original size:12 final size:12
Alignment explanation
Indices: 11224081--11224147 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 12
11224071 CCATGCAAAC
11224081 CCTAAACTCTAAA
1 CCTAAACT-TAAA
*
11224094 CCTAAACCTTAAC
1 CCTAAA-CTTAAA
* *
11224107 CCTAAACCCTATAT
1 CCTAAA-CTTA-AA
11224121 CCTAAACTTAAA
1 CCTAAACTTAAA
11224133 CCTAAACTTAAA
1 CCTAAACTTAAA
11224145 CCT
1 CCT
11224148 TAACCCTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
12 16 0.34
13 22 0.47
14 9 0.19
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (12 bp):
CCTAAACTTAAA
Found at i:11224360 original size:15 final size:15
Alignment explanation
Indices: 11224340--11224370 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11224330 ACCCTAACCT
*
11224340 TAAACCCTTAAAGCC
1 TAAACCCCTAAAGCC
11224355 TAAACCCCTAAAGCC
1 TAAACCCCTAAAGCC
11224370 T
1 T
11224371 TAAAGCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.35, G:0.06, T:0.19
Consensus pattern (15 bp):
TAAACCCCTAAAGCC
Found at i:11224371 original size:23 final size:22
Alignment explanation
Indices: 11224340--11224409 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 22
11224330 ACCCTAACCT
11224340 TAAACCCTTAAAGCCTAAACCCC
1 TAAACCCTTAAAG-CTAAACCCC
*
11224363 TAAAGCCTTAAAGCTAAA--CC
1 TAAACCCTTAAAGCTAAACCCC
* *
11224383 TAATCCC-TAAAGC-CAA-CCC
1 TAAACCCTTAAAGCTAAACCCC
11224402 TAAACCCT
1 TAAACCCT
11224410 AAGCCAAGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.05
19 14 0.35
20 7 0.17
22 5 0.12
23 12 0.30
ACGTcount: A:0.40, C:0.36, G:0.06, T:0.19
Consensus pattern (22 bp):
TAAACCCTTAAAGCTAAACCCC
Found at i:11224421 original size:19 final size:19
Alignment explanation
Indices: 11224335--11224421 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 19
11224325 CCATAACCCT
*
11224335 AACCTTAAACCCTTAAAGCC
1 AACCCTAAACCC-TAAAGCC
* *
11224355 TAAACCCCTAAAGCCTTAAAGCT
1 --AA-CCCTAAA-CCCTAAAGCC
* *
11224378 AAACCTAATCCCTAAAGCC
1 AACCCTAAACCCTAAAGCC
11224397 AACCCTAAACCCT-AAGCC
1 AACCCTAAACCCTAAAGCC
11224415 AAGCCCT
1 AA-CCCT
11224422 GAATCTTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
18 7 0.13
19 23 0.43
20 5 0.09
21 2 0.04
22 2 0.04
23 12 0.23
24 2 0.04
ACGTcount: A:0.39, C:0.37, G:0.07, T:0.17
Consensus pattern (19 bp):
AACCCTAAACCCTAAAGCC
Found at i:11231222 original size:13 final size:13
Alignment explanation
Indices: 11231204--11231229 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11231194 CCTTTCTTTC
11231204 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
11231217 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
11231230 CTCTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TTTTTTTGTTTTT
Found at i:11231729 original size:19 final size:19
Alignment explanation
Indices: 11231716--11231854 Score: 120
Period size: 19 Copynumber: 7.1 Consensus size: 19
11231706 GGGGTCTAGG
*
11231716 TTAGGGTTTAGGGTTAAGGT
1 TTAGGGTTTA-GGTTAGGGT
*
11231736 TTA-GGTTTAGGGTAGGGTT
1 TTAGGGTTTAGGTTAGGG-T
*
11231755 TTAAGGTTTAAGGTTAGGGT
1 TTAGGGTTT-AGGTTAGGGT
*
11231775 TTA-GGTTTAGGGTTAGGTT
1 TTAGGGTTTA-GGTTAGGGT
*
11231794 TTAGGGTTTAAGTTAGGGT
1 TTAGGGTTTAGGTTAGGGT
* * * *
11231813 TTAAGGTTTTGAATTAGAGT
1 TTAGGGTTTAG-GTTAGGGT
*
11231833 TTAAGGTTTAGGGTTAGGGT
1 TTAGGGTTTA-GGTTAGGGT
11231853 TT
1 TT
11231855 TACTTTATGG
Statistics
Matches: 98, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.07
19 41 0.42
20 41 0.42
21 9 0.09
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (19 bp):
TTAGGGTTTAGGTTAGGGT
Found at i:11231730 original size:13 final size:13
Alignment explanation
Indices: 11231714--11231854 Score: 92
Period size: 13 Copynumber: 10.8 Consensus size: 13
11231704 TTGGGGTCTA
11231714 GGTTAGGGTTTAG
1 GGTTAGGGTTTAG
*
11231727 GGTTAAGGTTTAG
1 GGTTAGGGTTTAG
*
11231740 GTTTAGGG--TAG
1 GGTTAGGGTTTAG
* *
11231751 GGTTTTAAGGTTTAA
1 GG--TTAGGGTTTAG
11231766 GGTTAGGGTTTAG
1 GGTTAGGGTTTAG
*
11231779 GTTTAGGG-TTAG
1 GGTTAGGGTTTAG
*
11231791 GTTTTAGGGTTTA-
1 G-GTTAGGGTTTAG
* *
11231804 AGTTAGGGTTTAA
1 GGTTAGGGTTTAG
** **
11231817 GGTTTTGAATTAG
1 GGTTAGGGTTTAG
* *
11231830 AGTTTAAGGTTTAG
1 -GGTTAGGGTTTAG
11231844 GGTTAGGGTTT
1 GGTTAGGGTTT
11231855 TACTTTATGG
Statistics
Matches: 96, Mismatches: 24, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
11 4 0.04
12 15 0.16
13 62 0.65
14 11 0.11
15 4 0.04
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.43
Consensus pattern (13 bp):
GGTTAGGGTTTAG
Found at i:11231763 original size:39 final size:39
Alignment explanation
Indices: 11231720--11231854 Score: 150
Period size: 39 Copynumber: 3.5 Consensus size: 39
11231710 TCTAGGTTAG
*
11231720 GGTTTAGGGTTAAGGTTTAGGTTTAGGGTAGGGTTTTAA
1 GGTTTAGGGTTAGGGTTTAGGTTTAGGGTAGGGTTTTAA
* *
11231759 GGTTTAAGGTTAGGGTTTAGGTTTAGGGTTA-GGTTTTAG
1 GGTTTAGGGTTAGGGTTTAGGTTTAGGG-TAGGGTTTTAA
* * ** *
11231798 GGTTTA-AGTTAGGGTTTAAGGTTTTGAATTAGAG-TTTAA
1 GGTTTAGGGTTAGGGTTT-AGGTTTAG-GGTAGGGTTTTAA
11231837 GGTTTAGGGTTAGGGTTT
1 GGTTTAGGGTTAGGGTTT
11231855 TACTTTATGG
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
38 10 0.12
39 58 0.72
40 13 0.16
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (39 bp):
GGTTTAGGGTTAGGGTTTAGGTTTAGGGTAGGGTTTTAA
Found at i:11231906 original size:7 final size:7
Alignment explanation
Indices: 11231896--11231971 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
11231886 TTTGAAGTTA
11231896 GGTTTAG
1 GGTTTAG
*
11231903 GGTTTGG
1 GGTTTAG
*
11231910 GGTTTAA
1 GGTTTAG
11231917 GG-TTA-
1 GGTTTAG
11231922 GGTTT-G
1 GGTTTAG
**
11231928 AGAATTAG
1 -GGTTTAG
11231936 GGTTTTATAG
1 GG--TT-TAG
*
11231946 GATTTAG
1 GGTTTAG
11231953 GGTTTAG
1 GGTTTAG
11231960 GGTTTAG
1 GGTTTAG
11231967 GGTTT
1 GGTTT
11231972 CAAGTTTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
5 2 0.04
6 5 0.09
7 38 0.72
8 3 0.06
9 1 0.02
10 4 0.08
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:11233771 original size:20 final size:20
Alignment explanation
Indices: 11233746--11233784 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11233736 ATCTATCCAT
11233746 TTTGACAAAGTTTT-ACTTTG
1 TTTGACAAA-TTTTGACTTTG
*
11233766 TTTGACTAATTTTGACTTT
1 TTTGACAAATTTTGACTTT
11233785 ATTGATCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (20 bp):
TTTGACAAATTTTGACTTTG
Found at i:11234421 original size:81 final size:82
Alignment explanation
Indices: 11234336--11234500 Score: 206
Period size: 81 Copynumber: 2.0 Consensus size: 82
11234326 AAAAAGGTTG
* * * * * * *
11234336 GGTTTCACAAAAGCCTTTTTCACATGGTTTGAGATTCATAAAAGGTTT-TTCCAAAGGTTCAGGA
1 GGTTTCACAAAAGCATTCTTCAAAAGGTTTGAGATTCACAAAAGGTTTCTTCAAAAAGTTCAGGA
11234400 TTCACATCGAAAAGCTA
66 TTCACATCGAAAAGCTA
** * * *
11234417 GGTTTCACACGAGGATTCTTCAAAAGGTTTGGGATTCACAAAAGGTTTCTTCAAAAAGTTTAGGA
1 GGTTTCACAAAAGCATTCTTCAAAAGGTTTGAGATTCACAAAAGGTTTCTTCAAAAAGTTCAGGA
*
11234482 TTCACATCGAAAGGCTA
66 TTCACATCGAAAAGCTA
11234499 GG
1 GG
11234501 ACTCATACCA
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
81 39 0.56
82 31 0.44
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (82 bp):
GGTTTCACAAAAGCATTCTTCAAAAGGTTTGAGATTCACAAAAGGTTTCTTCAAAAAGTTCAGGA
TTCACATCGAAAAGCTA
Found at i:11234526 original size:81 final size:81
Alignment explanation
Indices: 11234361--11234515 Score: 202
Period size: 82 Copynumber: 1.9 Consensus size: 81
11234351 TTTTTCACAT
* * * **
11234361 GGTTTGAGATTCATAAAAGGTTTTTCCAAAGGTTCAGGATTCACATCGAAAAGCTAGGTTTCACA
1 GGTTTGAGATTCACAAAAGGTTTTTCAAAAAGTTCAGGATTCACATCGAAAAGCTAGGACTCACA
* *
11234426 CGAGGATTCTTCAAAA
66 CCAAGATTCTTCAAAA
* * * *
11234442 GGTTTGGGATTCACAAAAGGTTTCTTCAAAAAGTTTAGGATTCACATCGAAAGGCTAGGACTCAT
1 GGTTTGAGATTCACAAAAGGTTT-TTCAAAAAGTTCAGGATTCACATCGAAAAGCTAGGACTCAC
11234507 ACCAAGATT
65 ACCAAGATT
11234516 TTTGAAAGGT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 21 0.34
82 41 0.66
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (81 bp):
GGTTTGAGATTCACAAAAGGTTTTTCAAAAAGTTCAGGATTCACATCGAAAAGCTAGGACTCACA
CCAAGATTCTTCAAAA
Found at i:11234639 original size:115 final size:115
Alignment explanation
Indices: 11234435--11234641 Score: 247
Period size: 115 Copynumber: 1.8 Consensus size: 115
11234425 ACGAGGATTC
* * ** *
11234435 TTCAAAAGGTTTGGGATTCACAAAAGGTTTCTTCAAAAAGTTTAGGATTCACATCGAAAGGCTAG
1 TTCAAAAGGTTTAGGATTCACAAAAGGTTTCTTCAAAAAGTTCAAAATTCACACCGAAAGGCTAG
* * *
11234500 GACTCATACCAAGATTTTTGAAAGGTTCGGATTTCATATCAAAAAAGTCT
66 AACTCATACCAAGATTCTTCAAAGGTTCGGATTTCATATCAAAAAAGTCT
* * ** *
11234550 TTCAAAAGGTTTAGGATTCACAAAAGGTTTCTTTAAAAGGTTCAAAATTCATGCCGAACA-G-TT
1 TTCAAAAGGTTTAGGATTCACAAAAGGTTTCTTCAAAAAGTTCAAAATTCACACCGAA-AGGCTA
* *
11234613 GAAACTCATACCGAGGTTCTTCAAAGGTT
65 G-AACTCATACCAAGATTCTTCAAAGGTT
11234642 TAAAATTCAT
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
114 2 0.03
115 72 0.96
116 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (115 bp):
TTCAAAAGGTTTAGGATTCACAAAAGGTTTCTTCAAAAAGTTCAAAATTCACACCGAAAGGCTAG
AACTCATACCAAGATTCTTCAAAGGTTCGGATTTCATATCAAAAAAGTCT
Found at i:11234691 original size:51 final size:52
Alignment explanation
Indices: 11234632--11234756 Score: 135
Period size: 51 Copynumber: 2.4 Consensus size: 52
11234622 ACCGAGGTTC
* * * *
11234632 TTCAAAGGTTTAAAATTCATAATGAAAAGG-CTAGGGTTCGCACTAAGATTT
1 TTCAAAGGTTCAAAATTCACAATGAAAAGGTCTAGGGTTCACACCAAGATTT
** ** *
11234683 TTCAAAGGTTCAGGATTCACGCTGAAAAGGTTTAGGGTTCACACCAAGATTT
1 TTCAAAGGTTCAAAATTCACAATGAAAAGGTCTAGGGTTCACACCAAGATTT
**
11234735 TTCAGAAGGTTCAGGATTCACA
1 TTCA-AAGGTTCAAAATTCACA
11234757 CCAAAAGGCT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
51 24 0.39
52 22 0.35
53 16 0.26
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (52 bp):
TTCAAAGGTTCAAAATTCACAATGAAAAGGTCTAGGGTTCACACCAAGATTT
Found at i:11234763 original size:52 final size:52
Alignment explanation
Indices: 11234663--11234795 Score: 153
Period size: 52 Copynumber: 2.6 Consensus size: 52
11234653 ATGAAAAGGC
* * * *
11234663 TAGGGTTCGCACTAAGATTTTTCAAAGGTTCAGGATTCACGCTGAAAAGGTT
1 TAGGGTTCACACCAAGATTTTTCAAAGGTTCAGGATTCACACTCAAAAGGTT
*
11234715 TAGGGTTCACACCAAGATTTTTCAGAAGGTTCAGGATTCACAC-CAAAAGGCT
1 TAGGGTTCACACCAAGATTTTTCA-AAGGTTCAGGATTCACACTCAAAAGGTT
* * ** *
11234767 GA-GATTCACATAAAGATTTTTTAAAGGTT
1 TAGGGTTCACACCAAGATTTTTCAAAGGTT
11234796 TAATATTTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 6 0.09
51 17 0.24
52 30 0.43
53 17 0.24
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (52 bp):
TAGGGTTCACACCAAGATTTTTCAAAGGTTCAGGATTCACACTCAAAAGGTT
Found at i:11234987 original size:41 final size:41
Alignment explanation
Indices: 11234937--11235088 Score: 128
Period size: 41 Copynumber: 3.7 Consensus size: 41
11234927 AAAGTAAACA
11234937 ATTCACAGTTGGAAGACTCTGAATTCATAACTAAAGCAACG
1 ATTCACAGTTGGAAGACTCTGAATTCATAACTAAAGCAACG
* * * * *
11234978 ATTCACAGTTGAAAAACTCTGGATTCA-CAGTAAAGGCAACG
1 ATTCACAGTTGGAAGACTCTGAATTCATAACTAAA-GCAACG
** * * * *
11235019 ATTCATGGTTAGGAAGACTTTGGATTCATAAC-AAAGAAAATG
1 ATTCACAGTT-GGAAGACTCTGAATTCATAACTAAAG-CAACG
* * *
11235061 ATTTACAGTTTGAATGACTCTAAATTCA
1 ATTCACAGTTGGAA-GACTCTGAATTCA
11235089 CATCGGGGTA
Statistics
Matches: 85, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
40 5 0.06
41 42 0.49
42 37 0.44
43 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (41 bp):
ATTCACAGTTGGAAGACTCTGAATTCATAACTAAAGCAACG
Found at i:11235112 original size:42 final size:42
Alignment explanation
Indices: 11235060--11235196 Score: 161
Period size: 42 Copynumber: 3.3 Consensus size: 42
11235050 CAAAGAAAAT
* * * *
11235060 GATTTACAGTTTGAATGACTCTAAATTCACATCGGGGTAAAC
1 GATTCACAGTTTGGATGACTCTAAATTCACATCAGAGTAAAC
* *
11235102 GATTCACAGTTTGGATGACTCTAAATTCACATTAGAGTAAAG
1 GATTCACAGTTTGGATGACTCTAAATTCACATCAGAGTAAAC
* * * *
11235144 GATTCACAGTTTGGATAACTTTAGATTCAC-GCA-ACGTAAAC
1 GATTCACAGTTTGGATGACTCTAAATTCACATCAGA-GTAAAC
11235185 GATTCACAGTTT
1 GATTCACAGTTT
11235197 TCAAAGATTC
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 1 0.01
41 18 0.22
42 63 0.77
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (42 bp):
GATTCACAGTTTGGATGACTCTAAATTCACATCAGAGTAAAC
Found at i:11235266 original size:37 final size:34
Alignment explanation
Indices: 11235194--11235276 Score: 112
Period size: 37 Copynumber: 2.3 Consensus size: 34
11235184 CGATTCACAG
*
11235194 TTTTCAAAGATTCACAAAAGCTAAAGATTTGTAAA
1 TTTT-AAAGATTCACAAAAGCTAAAGATTTATAAA
*
11235229 TTTTAAAGATTCACAAGAAAGGTTAAAGATTTATAAA
1 TTTTAAAGATTCAC-A-AAA-GCTAAAGATTTATAAA
11235266 TTTTAAAGATT
1 TTTTAAAGATT
11235277 TATAAAAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 10 0.23
35 5 0.12
36 3 0.07
37 25 0.58
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (34 bp):
TTTTAAAGATTCACAAAAGCTAAAGATTTATAAA
Found at i:11236547 original size:11 final size:11
Alignment explanation
Indices: 11236531--11236585 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
11236521 AATCATTAAA
11236531 TTTTTTCTCCT
1 TTTTTTCTCCT
11236542 TTTTTT-T-CT
1 TTTTTTCTCCT
* *
11236551 TTTTTTTTCTT
1 TTTTTTCTCCT
*
11236562 TTTTTTTTCCT
1 TTTTTTCTCCT
*
11236573 TTTTTTCTTCT
1 TTTTTTCTCCT
11236584 TT
1 TT
11236586 CTATCTCTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
9 8 0.21
10 2 0.05
11 28 0.74
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTCTCCT
Found at i:11236552 original size:9 final size:9
Alignment explanation
Indices: 11236540--11236633 Score: 64
Period size: 9 Copynumber: 9.8 Consensus size: 9
11236530 ATTTTTTCTC
11236540 CTTTTTTTT
1 CTTTTTTTT
11236549 CTTTTTTTTT
1 C-TTTTTTTT
11236559 CTTTTTTTTTT
1 C--TTTTTTTT
*
11236570 CCTTTTTTT
1 CTTTTTTTT
11236579 CTTCTTTCTATCT
1 CTT-TTT-T-T-T
*
11236592 CTTCTTTTT
1 CTTTTTTTT
*
11236601 -TTTTCTTT
1 CTTTTTTTT
*
11236609 CATTTTTTT
1 CTTTTTTTT
* *
11236618 CATCTTTTT
1 CTTTTTTTT
11236627 CTTTTTT
1 CTTTTTT
11236634 CTTTTCCTTC
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
8 6 0.09
9 30 0.44
10 13 0.19
11 12 0.18
12 3 0.04
13 4 0.06
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:11236557 original size:13 final size:13
Alignment explanation
Indices: 11236541--11236638 Score: 61
Period size: 13 Copynumber: 7.0 Consensus size: 13
11236531 TTTTTTCTCC
11236541 TTTTTTTTCTTTTT
1 TTTTTTTTC-TTTT
*
11236555 TTTTCTTTTTTTTT
1 TTTT-TTTTCTTTT
*
11236569 TCCTTTTTTTCTTCT
1 T--TTTTTTTCTTTT
* * * *
11236584 TTCTATCTCTTCT
1 TTTTTTTTCTTTT
11236597 TTTTTTTTCTTTCAT
1 TTTTTTTTCTTT--T
*
11236612 TTTTTTCATCTTTT
1 TTTTTT-TTCTTTT
*
11236626 TCTTTTTTCTTTT
1 TTTTTTTTCTTTT
11236639 CCTTCAAGTG
Statistics
Matches: 65, Mismatches: 13, Indels: 13
0.71 0.14 0.14
Matches are distributed among these distances:
13 23 0.35
14 15 0.23
15 19 0.29
16 8 0.12
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTCTTTT
Found at i:11236600 original size:31 final size:31
Alignment explanation
Indices: 11236533--11236600 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
11236523 TCATTAAATT
* * * *
11236533 TTTTCTCCTTTTTTTTCTTTTTTTTTCTTTTT
1 TTTT-TCCTTTTTTTTCTTTTTCTATCTCTTC
11236565 TTTTTCC-TTTTTTTCTTCTTTCTATCTCTTC
1 TTTTTCCTTTTTTTTCTT-TTTCTATCTCTTC
11236596 TTTTT
1 TTTTT
11236601 TTTTCTTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.79
Consensus pattern (31 bp):
TTTTTCCTTTTTTTTCTTTTTCTATCTCTTC
Found at i:11236606 original size:10 final size:10
Alignment explanation
Indices: 11236531--11236608 Score: 75
Period size: 10 Copynumber: 7.2 Consensus size: 10
11236521 AATCATTAAA
* *
11236531 TTTTTTCTCC
1 TTTTTTTTCT
11236541 TTTTTTTTCT
1 TTTTTTTTCT
11236551 TTTTTTTTCTT
1 TTTTTTTTC-T
11236562 TTTTTTTTCCT
1 TTTTTTTT-CT
11236573 TTTTTTCTTCT
1 TTTTTT-TTCT
*
11236584 TTCTATCTCTTCT
1 TT-T-T-TTTTCT
11236597 TTTTTTTTCT
1 TTTTTTTTCT
11236607 TT
1 TT
11236609 CATTTTTTTC
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
10 24 0.41
11 21 0.36
12 5 0.09
13 7 0.12
14 1 0.02
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:11237082 original size:11 final size:10
Alignment explanation
Indices: 11237066--11237130 Score: 58
Period size: 12 Copynumber: 5.9 Consensus size: 10
11237056 TAACCAAAAA
11237066 TTTTCTTTCTT
1 TTTTCTTT-TT
11237077 TTTTCTTTTT
1 TTTTCTTTTT
* *
11237087 TTTTATCATTT
1 TTTTCT-TTTT
11237098 TTTTCATTATTT
1 TTTTC-TT-TTT
11237110 TTTTCATTATTT
1 TTTTC-TT-TTT
11237122 TTTTCTTTT
1 TTTTCTTTT
11237131 ATTCTTTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
10 9 0.19
11 17 0.36
12 21 0.45
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:11237098 original size:12 final size:12
Alignment explanation
Indices: 11237075--11237126 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
11237065 ATTTTCTTTC
11237075 TTTTTTC-TT-T
1 TTTTTTCATTAT
*
11237085 TTTTTT-ATCAT
1 TTTTTTCATTAT
11237096 TTTTTTCATTAT
1 TTTTTTCATTAT
11237108 TTTTTTCATTAT
1 TTTTTTCATTAT
11237120 TTTTTTC
1 TTTTTTC
11237127 TTTTATTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
10 7 0.19
11 7 0.19
12 23 0.62
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTCATTAT
Found at i:11237132 original size:13 final size:13
Alignment explanation
Indices: 11237065--11237139 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 13
11237055 ATAACCAAAA
11237065 ATTTTCTTTCTTTT
1 ATTTT-TTTCTTTT
*
11237079 -TTCTTTTTTTTTAT
1 ATT-TTTTTCTTT-T
*
11237093 CATTTTTTTC-ATT
1 -ATTTTTTTCTTTT
*
11237106 ATTTTTTTC-ATT
1 ATTTTTTTCTTTT
11237118 ATTTTTTTCTTTT
1 ATTTTTTTCTTTT
*
11237131 ATTCTTTTC
1 ATTTTTTTC
11237140 CCTTTTTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
12 21 0.41
13 19 0.37
14 4 0.08
15 5 0.10
16 2 0.04
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTTTTTCTTTT
Found at i:11239237 original size:21 final size:21
Alignment explanation
Indices: 11239213--11239274 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
11239203 ATCCTTCAAT
11239213 ATTTAGATAATATCTTTTACA
1 ATTTAGATAATATCTTTTACA
* *
11239234 ATTTA-A-AA-ATCCTTCA-A
1 ATTTAGATAATATCTTTTACA
*
11239251 TATTTAGGTAATATCTTTTACA
1 -ATTTAGATAATATCTTTTACA
11239273 AT
1 AT
11239275 ATCTCTTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
17 1 0.03
18 11 0.35
19 2 0.06
20 3 0.10
21 13 0.42
22 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (21 bp):
ATTTAGATAATATCTTTTACA
Found at i:11239250 original size:39 final size:39
Alignment explanation
Indices: 11239196--11239274 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
11239186 TAAGAGATAG
11239196 TTTAAAAATCCTTCAATATTTAGATAATATCTTTTACAA
1 TTTAAAAATCCTTCAATATTTAGATAATATCTTTTACAA
*
11239235 TTTAAAAATCCTTCAATATTTAGGTAATATCTTTTACAA
1 TTTAAAAATCCTTCAATATTTAGATAATATCTTTTACAA
11239274 T
1 T
11239275 ATCTCTTTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (39 bp):
TTTAAAAATCCTTCAATATTTAGATAATATCTTTTACAA
Found at i:11242119 original size:25 final size:24
Alignment explanation
Indices: 11242091--11242170 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 24
11242081 TATATATAAT
*
11242091 AAATGATATAATGAAAATATGCAAG
1 AAATGACATAAT-AAAATATGCAAG
*
11242116 AAATGACATAATTAAAATATGCACG
1 AAATGACATAA-TAAAATATGCAAG
* *
11242141 AAAAGACATAACTAAAATATGCATG
1 AAATGACATAA-TAAAATATGCAAG
11242166 AAATG
1 AAATG
11242171 CAAAACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.23
Consensus pattern (24 bp):
AAATGACATAATAAAATATGCAAG
Found at i:11243014 original size:13 final size:13
Alignment explanation
Indices: 11242996--11243084 Score: 65
Period size: 13 Copynumber: 6.8 Consensus size: 13
11242986 TTTTCATAAA
*
11242996 GTTAGGGTGTAGG
1 GTTAGGGTTTAGG
*
11243009 GTTAGGTTTTACGG
1 GTTAGGGTTTA-GG
*
11243023 TTTAGGGTTTA-G
1 GTTAGGGTTTAGG
*
11243035 GTTAGGGTTTTGG
1 GTTAGGGTTTAGG
**
11243048 GTTTAGGG-TTACAC
1 G-TTAGGGTTTA-GG
* *
11243062 TTTAGGGTTTAAG
1 GTTAGGGTTTAGG
11243075 GTTAGGGTTT
1 GTTAGGGTTT
11243085 GGAAATTAGG
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
12 10 0.17
13 29 0.49
14 20 0.34
ACGTcount: A:0.16, C:0.03, G:0.38, T:0.43
Consensus pattern (13 bp):
GTTAGGGTTTAGG
Found at i:11243050 original size:26 final size:27
Alignment explanation
Indices: 11242997--11243057 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
11242987 TTTCATAAAG
*
11242997 TTAGGGTGTAGGGTTAGGTTTTACGGT
1 TTAGGGTTTAGGGTTAGGTTTTACGGT
*
11243024 TTAGGGTTTA-GGTTAGGGTTTT-GGGT
1 TTAGGGTTTAGGGTTA-GGTTTTACGGT
11243050 TTAGGGTT
1 TTAGGGTT
11243058 ACACTTTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.13, C:0.02, G:0.41, T:0.44
Consensus pattern (27 bp):
TTAGGGTTTAGGGTTAGGTTTTACGGT
Found at i:11243069 original size:20 final size:19
Alignment explanation
Indices: 11243023--11243078 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
11243013 GGTTTTACGG
***
11243023 TTTAGGGTTTAGGTTAGGG
1 TTTAGGGTTTAGGTTACAC
*
11243042 TTTTGGGTTTAGGGTTACAC
1 TTTAGGGTTTA-GGTTACAC
11243062 TTTAGGGTTTAAGGTTA
1 TTTAGGGTTT-AGGTTA
11243079 GGGTTTGGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 10 0.33
20 19 0.63
21 1 0.03
ACGTcount: A:0.18, C:0.04, G:0.34, T:0.45
Consensus pattern (19 bp):
TTTAGGGTTTAGGTTACAC
Found at i:11243072 original size:7 final size:7
Alignment explanation
Indices: 11242997--11243084 Score: 69
Period size: 7 Copynumber: 13.3 Consensus size: 7
11242987 TTTCATAAAG
11242997 TTAGGGT
1 TTAGGGT
*
11243004 GTAGGG-
1 TTAGGGT
*
11243010 TTAGGTT
1 TTAGGGT
*
11243017 TTACGGT
1 TTAGGGT
11243024 TTAGGGT
1 TTAGGGT
11243031 TTA-GG-
1 TTAGGGT
11243036 TTAGGGT
1 TTAGGGT
*
11243043 TTTGGGT
1 TTAGGGT
11243050 TTAGGG-
1 TTAGGGT
***
11243056 TTACACT
1 TTAGGGT
11243063 TTAGGGT
1 TTAGGGT
*
11243070 TTAAGG-
1 TTAGGGT
11243076 TTAGGGT
1 TTAGGGT
11243083 TT
1 TT
11243085 GGAAATTAGG
Statistics
Matches: 60, Mismatches: 16, Indels: 10
0.70 0.19 0.12
Matches are distributed among these distances:
5 3 0.05
6 16 0.27
7 41 0.68
ACGTcount: A:0.16, C:0.03, G:0.38, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:11244940 original size:20 final size:19
Alignment explanation
Indices: 11244917--11244965 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
11244907 AAGTTTTGTG
*
11244917 TAATTTTGACTTTATTTGAC
1 TAATTTTGACTTT-GTTGAC
*
11244937 TAATTTTCACTTTGTTGAC
1 TAATTTTGACTTTGTTGAC
*
11244956 TAAGTTTGAC
1 TAATTTTGAC
11244966 CAGATTTGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (19 bp):
TAATTTTGACTTTGTTGAC
Found at i:11244956 original size:19 final size:20
Alignment explanation
Indices: 11244917--11244958 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
11244907 AAGTTTTGTG
* *
11244917 TAATTTTGACTTTATTTGAC
1 TAATTTTCACTTTAGTTGAC
11244937 TAATTTTCACTTT-GTTGAC
1 TAATTTTCACTTTAGTTGAC
11244956 TAA
1 TAA
11244959 GTTTGACCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.52
Consensus pattern (20 bp):
TAATTTTCACTTTAGTTGAC
Found at i:11249657 original size:11 final size:11
Alignment explanation
Indices: 11249641--11249665 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11249631 TAAACTTTAT
11249641 CCACATTTACA
1 CCACATTTACA
11249652 CCACATTTACA
1 CCACATTTACA
11249663 CCA
1 CCA
11249666 AAGTCAGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (11 bp):
CCACATTTACA
Found at i:11250893 original size:14 final size:13
Alignment explanation
Indices: 11250874--11250913 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
11250864 CTTGCTTCTT
11250874 TTTTTTTTTTTTGG
1 TTTTTTTTTTTT-G
*
11250888 TTTTTTTTGTTTG
1 TTTTTTTTTTTTG
11250901 TTTTTTTATTTTT
1 TTTTTTT-TTTTT
11250914 TATTTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTTTG
Found at i:11251024 original size:35 final size:35
Alignment explanation
Indices: 11250942--11251542 Score: 312
Period size: 35 Copynumber: 16.8 Consensus size: 35
11250932 AATCGGGATA
* * * * *
11250942 ACACCACAAG-TCAAAAATAACAAAATGACTGAAATG
1 ACACCACAAGTTGAGAAATAA-ATAATGACAG-AACG
* * * *
11250978 ACACCGCAAGTTGAGAAATGAATAATGACGGAACA
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* * *
11251013 ACACCACAAGTTGAAAAATGAATAACGACAGAACG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* *** * *
11251048 ATACCATGGGTTGAGAAATAAATAATGACAAAATG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* * * *
11251083 ACACCACAAGTTGAGAAATAACAAAATAACTGGAGCG
1 ACACCACAAGTTGAGAAATAA-ATAATGAC-AGAACG
* ** * * *
11251120 ACATCGTAATTTGAGAAATGAATAATGACAGAATG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
**** * * * *
11251155 ACACTGTGAGTTGAAAAATAACAAAATGACCAAAATG
1 ACACCACAAGTTGAGAAATAA-ATAATGA-CAGAACG
* * * * **
11251192 ACATCGCAAGTTGAGAAATGAATAACGATGGAACG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* * **
11251227 ACACCACAAGTTGAGAAATAACAAAATAATC-GAAAAA
1 ACACCACAAGTTGAGAAATAA-ATAATGA-CAG-AACG
* * *
11251264 ACACCATAAGTTGAGAAATAAATAACGATAGAACG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
** * * **
11251299 ACACCGTAAGTTGAGCAATGAATAATGATGGAACG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* * * * *
11251334 ACACCATAAGTTGAAAAATAACAAAATAACTGGAACG
1 ACACCACAAGTTGAGAAATAA-ATAATGAC-AGAACG
*** *
11251371 ACATTGCAAGTTGAGAAATGAATAAT-A-ATGATACG
1 ACACCACAAGTTGAGAAATAAATAATGACA-GA-ACG
* * * * *
11251406 ACTCCACAAGTTAAGAAATAACAAAATGACCAAAATG
1 ACACCACAAGTTGAGAAATAA-ATAATGA-CAGAACG
* *
11251443 ACACCGA-GAGTTGAGAAATAAATAATGACAGAATG
1 ACACC-ACAAGTTGAGAAATAAATAATGACAGAACG
** * * *
11251478 ACACTGCAAGTTGAGAAGTGAATAATGACAGAATG
1 ACACCACAAGTTGAGAAATAAATAATGACAGAACG
* *
11251513 ACATCACAAGTTGAGAAATAACAAAATGAC
1 ACACCACAAGTTGAGAAATAA-ATAATGAC
11251543 CGACACAACA
Statistics
Matches: 422, Mismatches: 123, Indels: 40
0.72 0.21 0.07
Matches are distributed among these distances:
34 2 0.00
35 233 0.55
36 76 0.18
37 108 0.26
38 2 0.00
39 1 0.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (35 bp):
ACACCACAAGTTGAGAAATAAATAATGACAGAACG
Found at i:11251146 original size:72 final size:72
Alignment explanation
Indices: 11250942--11251539 Score: 245
Period size: 72 Copynumber: 8.4 Consensus size: 72
11250932 AATCGGGATA
* * * ** * *
11250942 ACACCACAAG-TCAAAAATAACAAAATGACTGAAATGACACCGCAAGTTGAGAAATGAATAATGA
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCAAGTTGAGAAATGAATAATGA
* **
11251006 CGGAACA
66 CAGAATG
* * * ** * * * *
11251013 ACACCACAAGTTGAAAAATGA-ATAACGA-CAGAACGATA-C-CATGGGTTGAGAAATAAATAAT
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCA--AGTTGAGAAATGAATAAT
*
11251074 GACAAAATG
64 GACAGAATG
*** * * *
11251083 ACACCACAAGTTGAGAAATAACAAAATAACTGGAGCGACATCGTAATTTGAGAAATGAATAATGA
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCAAGTTGAGAAATGAATAATGA
11251148 CAGAATG
66 CAGAATG
**** * * * *
11251155 ACACTGTGAGTTGAAAAATAACAAAATGACCAAAATGACATCGCAAGTTGAGAAATGAATAACGA
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCAAGTTGAGAAATGAATAATGA
** *
11251220 TGGAACG
66 CAGAATG
* * * ** * *
11251227 ACACCACAAGTTGAGAAATAACAAAATAATCGAAAA-AACACCATAAGTTGAGAAATAAATAACG
1 ACACCACAAGTTGAGAAATAACAAAATAA-CCAAAACGACATCGCAAGTTGAGAAATGAATAATG
* *
11251291 ATAGAACG
65 ACAGAATG
** * * * * *** * ** * * * *
11251299 ACACCGTAAGTTGAGCAATGA-ATAATGA-TGGAACGACACCATAAGTTGAAAAATAACAAAATA
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCAAGTTGAGAAATGA-ATAATG
* *
11251362 ACTGGAACG
65 AC-AGAATG
*** * * ** * * * * *
11251371 ACATTGCAAGTTGAGAAATGA-ATAATAA-TGATACGAC-TCCACAAGTTAAGAAATAACAAAAT
1 ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACAT-CGCAAGTTGAGAAATGA-ATAAT
*
11251433 GACCAAAATG
64 GA-CAGAATG
* * * * * *
11251443 ACACCGA-GAGTTGAGAAATAA-ATAATGA-CAGAATGACA-CTGCAAGTTGAGAAGTGAATAAT
1 ACACC-ACAAGTTGAGAAATAACAAAATAACCAAAACGACATC-GCAAGTTGAGAAATGAATAAT
11251504 GACAGAATG
64 GACAGAATG
*
11251513 ACATCACAAGTTGAGAAATAACAAAAT
1 ACACCACAAGTTGAGAAATAACAAAAT
11251540 GACCGACACA
Statistics
Matches: 399, Mismatches: 110, Indels: 36
0.73 0.20 0.07
Matches are distributed among these distances:
68 2 0.01
69 4 0.01
70 88 0.22
71 39 0.10
72 258 0.65
73 7 0.02
74 1 0.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (72 bp):
ACACCACAAGTTGAGAAATAACAAAATAACCAAAACGACATCGCAAGTTGAGAAATGAATAATGA
CAGAATG
Found at i:11251321 original size:179 final size:175
Alignment explanation
Indices: 11251019--11251543 Score: 543
Period size: 179 Copynumber: 2.9 Consensus size: 175
11251009 AACAACACCA
* * * *** *
11251019 CAAGTTGAAAAATGAATAACGACAGAACGATACCATGGGTTGAGAAATAA-ATAATGACAAAATG
1 CAAGTTGAGAAATGAATAACGA-TGAACGACACCACAAGTTGAGAAATAACAAAATGACAAAATG
* * * * * *
11251083 ACACCACAAGTTGAGAAATAACAAAATAACTGGAGCGACATCGTAATTTGAGAAATGAATAATGA
65 ACACCA-AAGTTGAGAAATAA-ATAATGA-TAGAACGACACCGTAAGTTGAG-AATGAATAATGA
* * *
11251148 CAGAATGACACTGTGAGTTGAAAAATAACAAAATGACCAAAATGACATCG
126 CAGAATGACACTATAAGTTGAAAAATAACAAAATGACCAAAACGACATCG
*
11251198 CAAGTTGAGAAATGAATAACGATGGAACGACACCACAAGTTGAGAAATAACAAAATAATCGAAAA
1 CAAGTTGAGAAATGAATAACGAT-GAACGACACCACAAGTTGAGAAATAACAAAATGA-C-AAAA
* *
11251263 -AACACCATAAGTTGAGAAATAAATAACGATAGAACGACACCGTAAGTTGAGCAATGAATAATGA
63 TGACACCA-AAGTTGAGAAATAAATAATGATAGAACGACACCGTAAGTTGAG-AATGAATAATGA
** * * * *** *
11251327 TGGAACGACACCATAAGTTGAAAAATAACAAAATAACTGGAACGACATTG
126 CAGAATGACACTATAAGTTGAAAAATAACAAAATGACCAAAACGACATCG
** * *
11251377 CAAGTTGAGAAATGAATAATAATGATACGACTCCACAAGTTAAGAAATAACAAAATGACCAAAAT
1 CAAGTTGAGAAATGAATAACGATGA-ACGACACCACAAGTTGAGAAATAACAAAATGA-CAAAAT
* * * * *
11251442 GACACCGAGAGTTGAGAAATAAATAATGACAGAATGACACTGCAAGTTGAGAAGTGAATAATGAC
64 GACACC-AAAGTTGAGAAATAAATAATGATAGAACGACACCGTAAGTTGAGAA-TGAATAATGAC
* *
11251507 AGAATGACA-TCACAAGTTGAGAAATAACAAAATGACC
127 AGAATGACACT-ATAAGTTGAAAAATAACAAAATGACC
11251544 GACACAACAC
Statistics
Matches: 286, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
178 8 0.03
179 243 0.85
180 10 0.03
181 21 0.07
182 4 0.01
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (175 bp):
CAAGTTGAGAAATGAATAACGATGAACGACACCACAAGTTGAGAAATAACAAAATGACAAAATGA
CACCAAAGTTGAGAAATAAATAATGATAGAACGACACCGTAAGTTGAGAATGAATAATGACAGAA
TGACACTATAAGTTGAAAAATAACAAAATGACCAAAACGACATCG
Found at i:11251417 original size:107 final size:107
Alignment explanation
Indices: 11251198--11251424 Score: 260
Period size: 107 Copynumber: 2.1 Consensus size: 107
11251188 AATGACATCG
*
11251198 CAAGTTGAGAAATGAATAACGATGGAACGACACCACAAGTTGAGAAATAACAAAATAATCGAAAA
1 CAAGTTGAGAAATGAATAACGATGGAACGACACCACAAGTTGAAAAATAACAAAATAATCGAAAA
* * *
11251263 AACACCATAAGTTGAGAAATAAATAACGATAGAACGACACCG
66 AACACCACAAGTTGAGAAATAAATAACAATAGAACGACACCA
* * * * *
11251305 TAAGTTGAGCAATGAATAATGATGGAACGACACCATAAGTTGAAAAATAACAAAATAA-CTGGAA
1 CAAGTTGAGAAATGAATAACGATGGAACGACACCACAAGTTGAAAAATAACAAAATAATC-GAAA
** *** * * *
11251369 CGACATTGCAAGTTGAGAAATGAATAATAAT-GATACGACTCCA
65 AAACACCACAAGTTGAGAAATAAATAACAATAGA-ACGACACCA
*
11251412 CAAGTTAAGAAAT
1 CAAGTTGAGAAAT
11251425 AACAAAATGA
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
106 3 0.03
107 95 0.97
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (107 bp):
CAAGTTGAGAAATGAATAACGATGGAACGACACCACAAGTTGAAAAATAACAAAATAATCGAAAA
AACACCACAAGTTGAGAAATAAATAACAATAGAACGACACCA
Found at i:11251457 original size:251 final size:249
Alignment explanation
Indices: 11250977--11251494 Score: 603
Period size: 251 Copynumber: 2.1 Consensus size: 249
11250967 TGACTGAAAT
* * * * * *
11250977 GACACCGCAAGTTGAGAAATGAATAATGACGGAACAACACCACAAGTTGAAAAATGAATAACGAC
1 GACACCGCAAGTTGAGAAATAAAAAATAACGAAAAAACACCACAAGTTGAAAAATAAATAACGAC
* ** * *
11251042 AGAACGATACCATGGGTTGAGAAATAAATAATGACAAAATGACACCACAAGTTGAGAAATAACAA
66 AGAACGACACCATAAGTTGAGAAATAAATAATGACAAAACGACACCACAAGTTGAAAAATAACAA
* * * * ****
11251107 AATAACTGGAGCGACATCGTAATTTGAGAAATGAATAATGACAGAATGACACTGTGAGTTGAAAA
131 AATAACTGGAACGACATCGCAAGTTGAGAAATGAATAATGACAGAACGACACCACAAGTTGAAAA
* * **
11251172 ATAACAAAATGACCAAAATGACATCGCAAGTTGAGAAATGAATAACGATGGAAC
196 ATAACAAAATGACCAAAATGACACCGCAAGTTGAGAAATAAATAACGACAGAAC
* * *
11251226 GACACCACAAGTTGAGAAATAACAAAATAATCGAAAAAACACCATAAGTTGAGAAATAAATAACG
1 GACACCGCAAGTTGAGAAATAA-AAAATAA-CGAAAAAACACCACAAGTTGAAAAATAAATAACG
* * * * *** *
11251291 ATAGAACGACACCGTAAGTTGAGCAATGAATAATGATGGAACGACACCATAAGTTGAAAAATAAC
64 ACAGAACGACACCATAAGTTGAGAAATAAATAATGACAAAACGACACCACAAGTTGAAAAATAAC
* *
11251356 AAAATAACTGGAACGACATTGCAAGTTGAGAAATGAATAAT-A-ATGATACGACTCCACAAGTT-
129 AAAATAACTGGAACGACATCGCAAGTTGAGAAATGAATAATGACA-GA-ACGACACCACAAGTTG
* *
11251418 AAGAAATAACAAAATGACCAAAATGACACCG-AGAGTTGAGAAATAAATAATGACAGAAT
192 AA-AAATAACAAAATGACCAAAATGACACCGCA-AGTTGAGAAATAAATAACGACAGAAC
*
11251477 GACACTGCAAGTTGAGAA
1 GACACCGCAAGTTGAGAA
11251495 GTGAATAATG
Statistics
Matches: 223, Mismatches: 40, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
249 21 0.09
250 11 0.05
251 191 0.86
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (249 bp):
GACACCGCAAGTTGAGAAATAAAAAATAACGAAAAAACACCACAAGTTGAAAAATAAATAACGAC
AGAACGACACCATAAGTTGAGAAATAAATAATGACAAAACGACACCACAAGTTGAAAAATAACAA
AATAACTGGAACGACATCGCAAGTTGAGAAATGAATAATGACAGAACGACACCACAAGTTGAAAA
ATAACAAAATGACCAAAATGACACCGCAAGTTGAGAAATAAATAACGACAGAAC
Found at i:11251668 original size:34 final size:34
Alignment explanation
Indices: 11251625--11251802 Score: 177
Period size: 34 Copynumber: 5.3 Consensus size: 34
11251615 TTTGCATTGG
*
11251625 GGCTAGCTAATCTAGGCTTAAATCATTCTTTGAA
1 GGCTAGCTAATCTAGGCTTAAATCTTTCTTTGAA
*
11251659 GGCTAGCTAAACTAGGCTTAAATCTTTCTTTGAA
1 GGCTAGCTAATCTAGGCTTAAATCTTTCTTTGAA
* * * *
11251693 GGCTAACTAAACTAGGCTT-AATGTTTCATT-AA
1 GGCTAGCTAATCTAGGCTTAAATCTTTCTTTGAA
* * * * * *
11251725 GGGCCAGCTAATCTGGGCTCAATAT-TTTATTAG-T
1 -GGCTAGCTAATCTAGGCTTAA-ATCTTTCTTTGAA
*
11251759 GGCTAGTTAATCT-GAGCTTAAATCTTTCTTTGAA
1 GGCTAGCTAATCTAG-GCTTAAATCTTTCTTTGAA
11251793 GGCTAGCTAA
1 GGCTAGCTAA
11251803 ACTGATATTA
Statistics
Matches: 116, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
32 5 0.04
33 45 0.39
34 64 0.55
35 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (34 bp):
GGCTAGCTAATCTAGGCTTAAATCTTTCTTTGAA
Found at i:11252539 original size:35 final size:36
Alignment explanation
Indices: 11252463--11252624 Score: 160
Period size: 34 Copynumber: 4.7 Consensus size: 36
11252453 ATTTCATTGG
*
11252463 GGCCAACTAATCTAGGCTTAA-ATTTTTCTTTGAAA
1 GGCCAACTAAACTAGGCTTAATATTTTTCTTTGAAA
* * *
11252498 -GTCAACTAAACTGGGCTTAATATTTTT-TTTTAAA
1 GGCCAACTAAACTAGGCTTAATATTTTTCTTTGAAA
* *
11252532 GGCCAACTAAACTAGGCTTAATA--TTTCATTG-AT
1 GGCCAACTAAACTAGGCTTAATATTTTTCTTTGAAA
* * *
11252565 GGCCAACTAATCTGGGCTT-ATATCTTTCTTTGAAA
1 GGCCAACTAAACTAGGCTTAATATTTTTCTTTGAAA
* **
11252600 -GCTAACTAAACTAAACTTAATATTT
1 GGCCAACTAAACTAGGCTTAATATTT
11252625 CATTAATGGT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
32 3 0.03
33 21 0.21
34 45 0.45
35 32 0.32
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.38
Consensus pattern (36 bp):
GGCCAACTAAACTAGGCTTAATATTTTTCTTTGAAA
Found at i:11252619 original size:102 final size:101
Alignment explanation
Indices: 11252438--11252624 Score: 277
Period size: 102 Copynumber: 1.8 Consensus size: 101
11252428 TTTTGTCAGA
* *
11252438 TAAACTAGGTTTAATATTTCATTGGGGCCAACTAATCTAGGCTTAAATTTTTCTTTGAAAGTCAA
1 TAAACTAGGCTTAATATTTCATTGGGGCCAACTAATCTAGGCTTAAATCTTTCTTTGAAAGTCAA
***
11252503 CTAAACTGGGCTTAATATTTTTTTTTAAAGGCCAAC
66 CTAAACTAAACTTAATATTTTTTTTTAAAGGCCAAC
* * *
11252539 TAAACTAGGCTTAATATTTCATTGATGGCCAACTAATCTGGGCTTATATCTTTCTTTGAAAG-CT
1 TAAACTAGGCTTAATATTTCATTG-GGGCCAACTAATCTAGGCTTAAATCTTTCTTTGAAAGTC-
11252603 AACTAAACTAAACTTAATATTT
64 AACTAAACTAAACTTAATATTT
11252625 CATTAATGGT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
101 24 0.32
102 52 0.68
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.39
Consensus pattern (101 bp):
TAAACTAGGCTTAATATTTCATTGGGGCCAACTAATCTAGGCTTAAATCTTTCTTTGAAAGTCAA
CTAAACTAAACTTAATATTTTTTTTTAAAGGCCAAC
Found at i:11252620 original size:67 final size:66
Alignment explanation
Indices: 11252464--11252700 Score: 240
Period size: 67 Copynumber: 3.5 Consensus size: 66
11252454 TTTCATTGGG
* * * ** * * * *
11252464 GCCAACTAATCTAGGCTTAAATTTTTCTTTGAAAGTCAACTAAACTGGGCTTAATATTTTTTTTT
1 GCCAACTAAACTAGGCTT-AATATTTCATTGATGGCCAACTAATCTGGGCTT-ATATCTTTATTT
11252529 AAA
64 AAA
*
11252532 GGCCAACTAAACTAGGCTTAATATTTCATTGATGGCCAACTAATCTGGGCTTATATCTTTCTTTG
1 -GCCAACTAAACTAGGCTTAATATTTCATTGATGGCCAACTAATCTGGGCTTATATCTTTATTT-
11252597 AAA
64 AAA
* ** * ** * * * *
11252600 GCTAACTAAACTAAACTTAATATTTCATTAATGGTTAACTAATTTGGCCTGATATCTTTATTTTA
1 GCCAACTAAACTAGGCTTAATATTTCATTGATGGCCAACTAATCTGGGCTTATATCTTTATTTAA
11252665 A
66 A
*
11252666 GACCAACTAAACTGGGCTTAATATTTCATTGATGG
1 G-CCAACTAAACTAGGCTTAATATTTCATTGATGG
11252701 TTTGCTAATC
Statistics
Matches: 141, Mismatches: 25, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
66 3 0.02
67 91 0.65
68 30 0.21
69 17 0.12
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (66 bp):
GCCAACTAAACTAGGCTTAATATTTCATTGATGGCCAACTAATCTGGGCTTATATCTTTATTTAA
A
Found at i:11253133 original size:24 final size:24
Alignment explanation
Indices: 11253101--11253163 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
11253091 GTAGATACCC
*
11253101 TGATGCAAATGCAAATATCTTATA
1 TGATGCAAATGCAAATATCTTACA
* *
11253125 TGATGCAAATGAAAATGTCTTACA
1 TGATGCAAATGCAAATATCTTACA
*
11253149 TAAATGCAAATGCAA
1 T-GATGCAAATGCAA
11253164 GTGATGCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 22 0.67
25 11 0.33
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (24 bp):
TGATGCAAATGCAAATATCTTACA
Found at i:11253443 original size:32 final size:33
Alignment explanation
Indices: 11253398--11253547 Score: 112
Period size: 32 Copynumber: 4.6 Consensus size: 33
11253388 TTTGGTTAAA
*
11253398 TAAACTAGGCTTAATATTTCATT-AGGGCCAAC
1 TAAACTAGGCTTAATATTTCATTGAAGGCCAAC
* * ** *
11253430 TAATCTAGGCTTAA-ATTT-TTTCGAAAACCAGC
1 TAAACTAGGCTTAATATTTCATT-GAAGGCCAAC
* * *
11253462 TAAACTGGGCTTAATATTTCATT-AGGGGCCAGC
1 TAAACTAGGCTTAATATTTCATTGA-AGGCCAAC
* * * *
11253495 TAATCT-GAGCTTAAATTTTTCTTTGAATGCCAAC
1 TAAACTAG-GCTT-AATATTTCATTGAAGGCCAAC
11253529 TAAACTAGGCTTAATATTT
1 TAAACTAGGCTTAATATTT
11253548 TTTCTTTGGG
Statistics
Matches: 89, Mismatches: 20, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
30 2 0.02
31 4 0.04
32 32 0.36
33 24 0.27
34 25 0.28
35 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (33 bp):
TAAACTAGGCTTAATATTTCATTGAAGGCCAAC
Found at i:11253483 original size:64 final size:63
Alignment explanation
Indices: 11253398--11253610 Score: 237
Period size: 70 Copynumber: 3.2 Consensus size: 63
11253388 TTTGGTTAAA
* *
11253398 TAAACTAGGCTTAATATTTCATTAGGGCCAACTAATCTAGGCTTAAATTTTTTCGAAAACCAGC
1 TAAACTAGGCTTAATATTTCATTAGGGCCAGCTAATCT-GGCTTAAATTTTTTTGAAAACCAGC
* **
11253462 TAAACTGGGCTTAATATTTCATTAGGGGCCAGCTAATCTGAGCTTAAATTTTTCTTTGAATGCCA
1 TAAACTAGGCTTAATATTTCATTA-GGGCCAGCTAATCTG-GCTTAAA-TTTT-TTTGAAAACCA
*
11253527 AC
62 GC
* * * *
11253529 TAAACTAGGCTTAATATTTTTTCTTTGGGGGCCAGCTAATTTGGGCTTAAATCTTTTTTGAAACC
1 TAAACTAGGCTTAATA---TTTCATT-AGGGCCAGCTAATCT-GGCTTAAAT-TTTTTTGAAAAC
11253594 CAGC
60 CAGC
11253598 TAAACTAGGCTTA
1 TAAACTAGGCTTA
11253611 CATACCCGAA
Statistics
Matches: 126, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
64 24 0.19
65 20 0.16
66 4 0.03
67 24 0.19
69 24 0.19
70 29 0.23
71 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (63 bp):
TAAACTAGGCTTAATATTTCATTAGGGCCAGCTAATCTGGCTTAAATTTTTTTGAAAACCAGC
Found at i:11253576 original size:36 final size:35
Alignment explanation
Indices: 11253457--11253578 Score: 115
Period size: 36 Copynumber: 3.5 Consensus size: 35
11253447 TTTTCGAAAA
* *
11253457 CCAGCTAAACTGGGCTTAATA--TTTCATTAGGGG
1 CCAGCTAAACTGGGCTTAATATTTTTCTTTGGGGG
* * ***
11253490 CCAGCTAATCTGAGCTTAA-ATTTTTCTTTGAATG
1 CCAGCTAAACTGGGCTTAATATTTTTCTTTGGGGG
* *
11253524 CCAACTAAACTAGGCTTAATATTTTTTCTTTGGGGG
1 CCAGCTAAACTGGGCTTAATA-TTTTTCTTTGGGGG
**
11253560 CCAGCTAATTTGGGCTTAA
1 CCAGCTAAACTGGGCTTAA
11253579 ATCTTTTTTG
Statistics
Matches: 67, Mismatches: 18, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
32 1 0.01
33 17 0.25
34 22 0.33
35 1 0.01
36 26 0.39
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (35 bp):
CCAGCTAAACTGGGCTTAATATTTTTCTTTGGGGG
Found at i:11254475 original size:33 final size:32
Alignment explanation
Indices: 11254438--11254512 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
11254428 TCTTTTCTTT
11254438 TTTTTTTTTCTTTCCTTTAATCCATTCCTTTCG
1 TTTTTTTTTCTTT-CTTTAATCCATTCCTTTCG
** * * *
11254471 TTTTTCTTTTCTTTCTTTTTTCCTTTTCTTTCT
1 TTTTT-TTTTCTTTCTTTAATCCATTCCTTTCG
11254504 TTTTTTTTT
1 TTTTTTTTT
11254513 TGTATTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 4 0.11
33 24 0.67
34 8 0.22
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.75
Consensus pattern (32 bp):
TTTTTTTTTCTTTCTTTAATCCATTCCTTTCG
Found at i:11254487 original size:9 final size:9
Alignment explanation
Indices: 11254473--11254506 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
11254463 TCCTTTCGTT
11254473 TTTCTTTTC
1 TTTCTTTTC
11254482 TTTCTTTT-
1 TTTCTTTTC
*
11254490 TTCCTTTTC
1 TTTCTTTTC
11254499 TTTCTTTT
1 TTTCTTTT
11254507 TTTTTTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:11254496 original size:17 final size:17
Alignment explanation
Indices: 11254426--11254508 Score: 78
Period size: 17 Copynumber: 4.8 Consensus size: 17
11254416 CACCCATTCA
**
11254426 TTTCTTTTCTTTTTTTTT
1 TTTC-TTTCTTTTTTCCT
** *
11254444 TTTCTTTCCTTTAATCCA
1 TTTCTTT-CTTTTTTCCT
* *
11254462 TTCCTTTCGTTTTT-CT
1 TTTCTTTCTTTTTTCCT
11254478 TTTCTTTCTTTTTTCCT
1 TTTCTTTCTTTTTTCCT
11254495 TTTCTTTCTTTTTT
1 TTTCTTTCTTTTTT
11254509 TTTTTGTATT
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
16 13 0.25
17 23 0.45
18 15 0.29
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.75
Consensus pattern (17 bp):
TTTCTTTCTTTTTTCCT
Found at i:11254513 original size:22 final size:22
Alignment explanation
Indices: 11254472--11254512 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11254462 TTCCTTTCGT
11254472 TTTTCTTTTCTTTCTTTTTTCC
1 TTTTCTTTTCTTTCTTTTTTCC
*
11254494 TTTTC-TTTCTTTTTTTTTT
1 TTTTCTTTTCTTTCTTTTTT
11254513 TGTATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTCTTTTCTTTCTTTTTTCC
Found at i:11259849 original size:12 final size:12
Alignment explanation
Indices: 11259834--11259858 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11259824 TTTATTAACT
11259834 TATGTATATATA
1 TATGTATATATA
11259846 TATGTATATATA
1 TATGTATATATA
11259858 T
1 T
11259859 TATTTTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:11261241 original size:17 final size:17
Alignment explanation
Indices: 11261219--11261273 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
11261209 CATACCATAA
11261219 AAAATTTAACAATACAT
1 AAAATTTAACAATACAT
* *
11261236 AAAATTAAAC-TTACAAT
1 AAAATTTAACAATAC-AT
*
11261253 TAAATTTAAACAAT-CAT
1 AAAATTT-AACAATACAT
11261270 AAAA
1 AAAA
11261274 ATTCACATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
16 3 0.10
17 21 0.72
18 4 0.14
19 1 0.03
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATTTAACAATACAT
Found at i:11263100 original size:26 final size:27
Alignment explanation
Indices: 11263051--11263102 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
11263041 CCTTTAAAAA
*
11263051 TTTTTTTATTTTCGGGTCTTTTTTCTT
1 TTTTTTTATTTTCGGGTCTGTTTTCTT
* *
11263078 TTTTTTTTTTTTC-GGTGTGTTTTCT
1 TTTTTTTATTTTCGGGTCTGTTTTCT
11263103 CTCCCTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.02, C:0.10, G:0.13, T:0.75
Consensus pattern (27 bp):
TTTTTTTATTTTCGGGTCTGTTTTCTT
Found at i:11266649 original size:3 final size:3
Alignment explanation
Indices: 11266641--11266681 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
11266631 AGACAGGAAA
11266641 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
11266682 ATATTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:11267880 original size:23 final size:21
Alignment explanation
Indices: 11267829--11267881 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
11267819 ATGGGATCTT
11267829 GGTGGCTATAGGGTAGCTGTA
1 GGTGGCTATAGGGTAGCTGTA
* *
11267850 GGTGGGCTGATAGGGTAGTTGGTC
1 GGT-GGCT-ATAGGGTAGCT-GTA
11267874 GGTGGCTA
1 GGTGGCTA
11267882 GTCAGGGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.11
22 5 0.19
23 14 0.52
24 5 0.19
ACGTcount: A:0.15, C:0.09, G:0.47, T:0.28
Consensus pattern (21 bp):
GGTGGCTATAGGGTAGCTGTA
Found at i:11268571 original size:69 final size:68
Alignment explanation
Indices: 11268486--11269363 Score: 901
Period size: 69 Copynumber: 12.4 Consensus size: 68
11268476 GGCAATTAAC
* * *
11268486 GAAATGACCGAGATTAAACCACGAGTCAAAGGATAAAGATGATTGGGACTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCAAGTCAGA
11268551 GAAT
65 GAAT
* * * * *
11268555 GAAATGATCAGGATTAAATCACGAGTCAAAGGATAAAGATGACTAGGACTGAACCACAAGTCGGG
1 GAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCAAGTC-AG
*
11268620 CAATTAAT
64 --A-GAAT
* **
11268628 AAAATGATCGGGATTAAACCACGAGTCAAAGGATAAAGATGACTGAAACTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCAAGTCAGA
11268693 GAAT
65 GAAT
* * * * * **
11268697 GAAATGACCGAGATTAAACCGCGAGTCAAAGGATAAATATGACTAGGACTGAACCATAAGTCGAG
1 GAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCAAGTC-AG
*
11268762 CAATTAAT
64 --A-GAAT
* *
11268770 AAAATGATCAGGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCAAGTCAGA
*
11268835 GAAG
65 GAAT
* * * **
11268839 GAAATGACCGGGATTAAACCATGAGTCAAAGATTAAAGATGACTGGGATTGAACCATAAGTCAGG
1 GAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCAAGTCA--
*
11268904 GGAATTAAT
63 -G-A-GAAT
* **
11268913 GAAATGATCGGGATTAAACCACGAGTTAAAGATAAAGATGACTGGGACTGAACTACAAGTCAGAG
1 GAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAAGTCAGAG
11268978 AAT
66 AAT
* * * *
11268981 GAAATGATCGAGATTAAATCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCAAGTCAGA
11269046 GGAATTAAT
65 -G----AAT
* * * * * * * *
11269055 GAAATGACCGAGATTAAACCATGAGTTAAAGATAAAGATTACTAGGACTAAACCGTAAGTCAGGC
1 GAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAAGTCA-G-
*
11269120 AATTAAT
64 -A-GAAT
* * * * * *
11269127 AAAATGATCGAGATTAAACTACGAGTCAAGGATTAAAGATGACTAGGATTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCAAGTCAGA
11269192 GAAT
65 GAAT
** * *
11269196 GAAATGATCGGGATTAAACCGTGAGTCAAAGATTAAAGATGATTGGGATTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCAAGTCAGA
11269261 GAAT
65 GAAT
* * * *
11269265 GAAATGACCGGGATTAAACCGCGAGTCAAAGATTAAATATGACTGGGTCTGAACCGCAAGTCAGA
1 GAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCAAGTCAGA
11269330 GAAT
65 GAAT
* * * *
11269334 AAAATGATCGAGATTAAACCGCGAATCAAA
1 GAAATGATCGGGATTAAACCACGAGTCAAA
11269364 TTTATTCCTG
Statistics
Matches: 681, Mismatches: 104, Indels: 48
0.82 0.12 0.06
Matches are distributed among these distances:
68 33 0.05
69 348 0.51
70 8 0.01
72 36 0.05
73 193 0.28
74 62 0.09
76 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.19
Consensus pattern (68 bp):
GAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAAGTCAGAG
AAT
Found at i:11268732 original size:142 final size:140
Alignment explanation
Indices: 11268479--11269363 Score: 989
Period size: 142 Copynumber: 6.3 Consensus size: 140
11268469 CGAATCAGGC
* * * *
11268479 AATTAACGAAATGACCGAGATTAAACCACGAGTCAAAGGATAAAGATGATTGGGACTGAACCGCA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCA
* *
11268544 AGTCAGAGAATGAAATGATC-AGGATTAAATCACGAGTCAAAGGA-TAAAGATGACTAGGACTGA
65 AGTCAGAGAATGAAATGACCGA-GATTAAACCACGAGTCAAA-GATTAAAGATGACTAGGACTGA
11268607 ACCACAAGTCGGG
128 ACCACAAGTCGGG
* **
11268620 CAATTAATAAAATGATCGGGATTAAACCACGAGTCAAAGGATAAAGATGACTGAAACTGAACCGC
1 -AATTAATGAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGC
* *
11268685 AAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAAGGA-TAAATATGACTAGGACTGA
64 AAGTCAGAGAATGAAATGACCGAGATTAAACCACGAGTCAAA-GATTAAAGATGACTAGGACTGA
* *
11268749 ACCATAAGTCGAGC
128 ACCACAAGTCG-GG
* *
11268763 AATTAATAAAATGATCAGGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACTGAACCGCA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAGATGACTGGGACTGAACCGCA
* * * * *
11268828 AGTCAGAGAAGGAAATGACCGGGATTAAACCATGAGTCAAAGATTAAAGATGACTGGGATTGAAC
65 AGTCAGAGAATGAAATGACCGAGATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTGAAC
*
11268893 CATAAGTCAGGGG
130 CACAAGTC--GGG
* **
11268906 AATTAATGAAATGATCGGGATTAAACCACGAGTTAAAGATAAAGATGACTGGGACTGAACTACAA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAA
* * * * *
11268971 GTCAGAGAATGAAATGATCGAGATTAAATCGCGAGTCAAAGATTAAAGATGACTGGGATTGAACC
66 GTCAGAGAATGAAATGACCGAGATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTGAACC
*
11269036 GCAAGTCAGAGG
131 ACAAGTC-G-GG
* * * * * * * *
11269048 AATTAATGAAATGACCGAGATTAAACCATGAGTTAAAGATAAAGATTACTAGGACTAAACCGTAA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAA
* * * * * *
11269113 GTCAGGCAATTAATAAAATGATCGAGATTAAACTACGAGTCAAGGATTAAAGATGACTAGGATTG
66 GTCA-G--A-GAATGAAATGACCGAGATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTG
* *
11269178 AACCGCAAGTC-AG
127 AACCACAAGTCGGG
* ** * *
11269191 -A-GAATGAAATGATCGGGATTAAACCGTGAGTCAAAGATTAAAGATGATTGGGATTGAACCGCA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGA-TAAAGATGACTGGGACTGAACCGCA
* * * * *
11269254 AGTCAGAGAATGAAATGACCGGGATTAAACCGCGAGTCAAAGATTAAATATGACTGGGTCTGAAC
65 AGTCAGAGAATGAAATGACCGAGATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTGAAC
* *
11269319 CGCAAGTCAGAG
130 CACAAGTC-GGG
* * *
11269331 AA-T-A--AAATGATCGAGATTAAACCGCGAATCAAA
1 AATTAATGAAATGATCGGGATTAAACCACGAGTCAAA
11269364 TTTATTCCTG
Statistics
Matches: 648, Mismatches: 81, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
138 81 0.12
139 1 0.00
140 3 0.00
141 36 0.06
142 427 0.66
143 39 0.06
144 1 0.00
145 1 0.00
146 59 0.09
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.19
Consensus pattern (140 bp):
AATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGACTGGGACTGAACCGCAA
GTCAGAGAATGAAATGACCGAGATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTGAACC
ACAAGTCGGG
Found at i:11268821 original size:284 final size:282
Alignment explanation
Indices: 11268473--11269330 Score: 1090
Period size: 284 Copynumber: 3.0 Consensus size: 282
11268463 GAATCGCGAA
** * *
11268473 TCAG-GCAATTAACGAAATGACCGAGATTAAACCACGAGTCAAAGGATAAAGATGATTGGGACTG
1 TCAGAGCAATTAATAAAATGACAGAGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACTG
11268537 AACCGCAAGTCAGAGAATGAAATGATCAGGATTAAATCACGAGTCAAAGGA-TAAAGATGACTAG
66 AACCGCAAGTCAGAGAATGAAATGATC-GGATTAAA-CACGAGTCAAAGGATTAAAGATGACTAG
* *
11268601 GACTGAACCACAAGTCGGGCAATTAATAAAATGATCGGGATTAAACCACGAGTCAAAGGATAAAG
129 GATTGAACCACAAGTCGGG-AATTAATGAAATGATCGGGATTAAACCACGAGTCAAA-GATAAAG
**
11268666 ATGACTGAAACTGAACCGCAAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAAGGA-
192 ATGACTGGGACTGAACCGCAAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAA-GAT
* *
11268730 TAAATATGACTAGGACTGAACCATAAG
256 TAAATATGACTGGGACTGAACCACAAG
11268757 TC-GAGCAATTAATAAAATGATCAG-GATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACT
1 TCAGAGCAATTAATAAAATGA-CAGAGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACT
* * * *
11268820 GAACCGCAAGTCAGAGAAGGAAATGACCGGGATTAAACCATGAGTCAAA-GATTAAAGATGACTG
65 GAACCGCAAGTCAGAGAATGAAATGATC-GGATTAAA-CACGAGTCAAAGGATTAAAGATGACTA
* *
11268884 GGATTGAACCATAAGTCAGGGGAATTAATGAAATGATCGGGATTAAACCACGAGTTAAAGATAAA
128 GGATTGAACCACAAGTC--GGGAATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGATAAA
** * *
11268949 GATGACTGGGACTGAACTACAAGTCAGAGAATGAAATGATCGAGATTAAATCGCGAGTCAAAGAT
191 GATGACTGGGACTGAACCGCAAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAAGAT
* * *
11269014 TAAAGATGACTGGGATTGAACCGCAAG
256 TAAATATGACTGGGACTGAACCACAAG
* * * * * * * *
11269041 TCAGAGGAATTAATGAAATGACCGAGATTAAACCATGAGTTAAA-GATAAAGATTACTAGGACTA
1 TCAGAGCAATTAATAAAATGACAGAGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACTG
* * *
11269105 AACCGTAAGTCAGGCAATTAATAAAATGATCGAGATTAAACTACGAGTC-AAGGATTAAAGATGA
66 AACCGCAAGTCA-G--A-GAATGAAATGATCG-GATTAAAC-ACGAGTCAAAGGATTAAAGATGA
* * * **
11269169 CTAGGATTGAACCGCAAGTC-AG-A-GAATGAAATGATCGGGATTAAACCGTGAGTCAAAGATTA
125 CTAGGATTGAACCACAAGTCGGGAATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGA-TA
* * *
11269231 AAGATGATTGGGATTGAACCGCAAGTCAGAGAATGAAATGACCGGGATTAAACCGCGAGTCAAAG
189 AAGATGACTGGGACTGAACCGCAAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAAG
* *
11269296 ATTAAATATGACTGGGTCTGAACCGCAAG
254 ATTAAATATGACTGGGACTGAACCACAAG
11269325 TCAGAG
1 TCAGAG
11269331 AATAAAATGA
Statistics
Matches: 501, Mismatches: 57, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
283 37 0.07
284 333 0.66
285 72 0.14
286 3 0.01
287 5 0.01
288 51 0.10
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (282 bp):
TCAGAGCAATTAATAAAATGACAGAGATTAAACCACGAGTCAAAGGATAAAGATGACTGGGACTG
AACCGCAAGTCAGAGAATGAAATGATCGGATTAAACACGAGTCAAAGGATTAAAGATGACTAGGA
TTGAACCACAAGTCGGGAATTAATGAAATGATCGGGATTAAACCACGAGTCAAAGATAAAGATGA
CTGGGACTGAACCGCAAGTCAGAGAATGAAATGACCGAGATTAAACCGCGAGTCAAAGATTAAAT
ATGACTGGGACTGAACCACAAG
Found at i:11269216 original size:34 final size:34
Alignment explanation
Indices: 11268487--11269355 Score: 245
Period size: 35 Copynumber: 24.6 Consensus size: 34
11268477 GCAATTAACG
* * * * * *
11268487 AAATGACCGAGATTAAACCACGAGTCAAAGGATA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * *
11268521 AAGATGATTGGGACTGAACCGCAAGTCAGAGAATG
1 AA-ATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * * * *
11268556 AAATGATCAGGATTAAATCACGAGTCAAAGGATA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * * * *
11268590 AAGATGA-CTAGGACTGAACCACAAGTCGGGCAATTAATA
1 AA-ATGATC-GGGATTAAACCGCAAGTC-AG--A-GAATA
* * * *
11268629 AAATGATCGGGATTAAACCACGAGTCAAAGGATA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
** * * *
11268663 AAGATGA-CTGAAACTGAACCGCAAGTCAGAGAATG
1 AA-ATGATC-GGGATTAAACCGCAAGTCAGAGAATA
* * * * *
11268698 AAATGACCGAGATTAAACCGCGAGTCAAAGGATA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * ** *
11268732 AATATGA-CTAGGACTGAACCATAAGTCGAGCAATTAATA
1 AA-ATGATC-GGGATTAAACCGCAAGTC-AG--A-GAATA
* * * * *
11268771 AAATGATCAGGATTAAACCACGAGTCAAAGGATA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * **
11268805 AAGATGA-CTGGGACTGAACCGCAAGTCAGAGAAGG
1 AA-ATGATC-GGGATTAAACCGCAAGTCAGAGAATA
* *** * *
11268840 AAATGACCGGGATTAAACCATGAGTCAAAGATTA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* ** *
11268874 AAGATGA-CTGGGATTGAACCATAAGTCAGGGGAATTAA
1 AA-ATGATC-GGGATTAAACCGCAAGTCA-GAGAA-T-A
* * * *
11268912 TGAAATGATCGGGATTAAACCACGAGTTAAAG-ATA
1 --AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * ** *
11268947 AAGATGA-CTGGGACTGAACTACAAGTCAGAGAATG
1 AA-ATGATC-GGGATTAAACCGCAAGTCAGAGAATA
* * * * *
11268982 AAATGATCGAGATTAAATCGCGAGTCAAAGATTA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
*
11269016 AAGATGA-CTGGGATTGAACCGCAAGTCAGAGGAATTAA
1 AA-ATGATC-GGGATTAAACCGCAAGTCAGA-GAA-T-A
* * *** * *
11269054 TGAAATGACCGAGATTAAACCATGAGTTAAAG-ATA
1 --AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * * *
11269089 AAGATTA-CTAGGACTAAACCGTAAGTCAGGCAATTAATA
1 AA-ATGATC-GGGATTAAACCGCAAGTCA-G--A-GAATA
* ** * *
11269128 AAATGATCGAGATTAAACTACGAGTCA-AGGATTA
1 AAATGATCGGGATTAAACCGCAAGTCAGA-GAATA
* * *
11269162 AAGATGA-CTAGGATTGAACCGCAAGTCAGAGAATG
1 AA-ATGATC-GGGATTAAACCGCAAGTCAGAGAATA
** * *
11269197 AAATGATCGGGATTAAACCGTGAGTCAAAGATTA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * *
11269231 AAGATGATTGGGATTGAACCGCAAGTCAGAGAATG
1 AA-ATGATCGGGATTAAACCGCAAGTCAGAGAATA
* * * *
11269266 AAATGACCGGGATTAAACCGCGAGTCAAAGATTA
1 AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
*
11269300 AATATGA-CTGGG-TCTGAACCGCAAGTCAGAGAATA
1 AA-ATGATC-GGGAT-TAAACCGCAAGTCAGAGAATA
*
11269335 AAATGATCGAGATTAAACCGC
1 AAATGATCGGGATTAAACCGC
11269356 GAATCAAATT
Statistics
Matches: 593, Mismatches: 183, Indels: 118
0.66 0.20 0.13
Matches are distributed among these distances:
33 6 0.01
34 222 0.37
35 233 0.39
36 8 0.01
37 6 0.01
38 57 0.10
39 55 0.09
40 6 0.01
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.19
Consensus pattern (34 bp):
AAATGATCGGGATTAAACCGCAAGTCAGAGAATA
Found at i:11269501 original size:22 final size:22
Alignment explanation
Indices: 11269475--11269519 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
11269465 CGAATCGAAT
11269475 TTATGCCCGAAGGTCTTAAAAA
1 TTATGCCCGAAGGTCTTAAAAA
* *
11269497 TTATGCCCGGAGGTCTTACAAA
1 TTATGCCCGAAGGTCTTAAAAA
11269519 T
1 T
11269520 CTTAAAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (22 bp):
TTATGCCCGAAGGTCTTAAAAA
Found at i:11269758 original size:121 final size:122
Alignment explanation
Indices: 11269496--11269943 Score: 703
Period size: 122 Copynumber: 3.7 Consensus size: 122
11269486 GGTCTTAAAA
* * **
11269496 ATTATGCCCGGAGGTCTTACAAATCTTAAAATCTTTGAATGCTCCTCATAATCAAAGGCGATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
* * *
11269561 ACTTT-AAAATTTGAGAA----TCAATCTTGAAAGTCATGCGTAGAGGCTTTTAGAG
66 ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAGAG
* *
11269613 ATTATGCTCGGAGGTCTTATAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
**
11269678 ACTTT-AAAATTTGAAAATTTTTTAATCTTGAAAGTCATATGCAGAGGCTTTTAGAG
66 ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAGAG
*
11269734 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGGATGCTCCTCATAATCAGAGGAAATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
*
11269799 ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAAAG
66 ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAGAG
* * *
11269856 ATTATACCCGGAGGTCTTACAAATCTCAAAATCTTTGGATGCTCTTCATAATCAGAGGAAATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
11269921 ACTTTAAAAATTT-AAAATTTTTT
66 ACTTTAAAAATTTGAAAATTTTTT
11269944 TGAAAATGGC
Statistics
Matches: 307, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
117 75 0.24
121 108 0.35
122 124 0.40
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (122 bp):
ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAA
ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAGAG
Found at i:11269919 original size:243 final size:238
Alignment explanation
Indices: 11269496--11269943 Score: 709
Period size: 243 Copynumber: 1.9 Consensus size: 238
11269486 GGTCTTAAAA
* **
11269496 ATTATGCCCGGAGGTCTTACAAATCTTAAAATCTTTGAATGCTCCTCATAATCAAAGGCGATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAAAGGAAATGAA
* * * * *
11269561 ACTTTAAAATTTGAGAATCAATCTTGAAAGTCATGCGTAGAGGCTTTTAGAGATTATGCTCGGAG
66 ACTTTAAAATTTGAAAATCAATCTTGAAAGTCATGCGCAGAGGCTTTTAAAGATTATACCCGGAG
*
11269626 GTCTTATAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAAACTTT-AAAATTT
131 GTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAAACTTTAAAAATTT
11269690 GAAAATTTTTTAATCTTGAAAGTCATATGCAGAGGCTTTTAGAG
196 -AAAATTTTTTAATCTTGAAAGTCATATGCAGAGGCTTTTAGAG
* *
11269734 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGGATGCTCCTCATAATCAGAGGAAATGAA
1 ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAAAGGAAATGAA
*
11269799 ACTTTAAAAATTTGAAAATTTTTTAATCTTGAAAGTCATGCGCAGAGGCTTTTAAAGATTATACC
66 ACTTT-AAAATTTGAAAA----TCAATCTTGAAAGTCATGCGCAGAGGCTTTTAAAGATTATACC
* *
11269864 CGGAGGTCTTACAAATCTCAAAATCTTTGGATGCTCTTCATAATCAGAGGAAATGAAACTTTAAA
126 CGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAAACTTTAAA
11269929 AATTTAAAATTTTTT
191 AATTTAAAATTTTTT
11269944 TGAAAATGGC
Statistics
Matches: 190, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
238 65 0.34
239 11 0.06
243 107 0.56
244 7 0.04
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (238 bp):
ATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAAAGGAAATGAA
ACTTTAAAATTTGAAAATCAATCTTGAAAGTCATGCGCAGAGGCTTTTAAAGATTATACCCGGAG
GTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGAAATGAAACTTTAAAAATTT
AAAATTTTTTAATCTTGAAAGTCATATGCAGAGGCTTTTAGAG
Found at i:11270516 original size:33 final size:33
Alignment explanation
Indices: 11270433--11270817 Score: 470
Period size: 33 Copynumber: 11.7 Consensus size: 33
11270423 CTTCTTTTAG
* * * * *
11270433 GGCCAAATAAACTGGGCTTAAA-TTTTATTAAA
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* * *
11270465 GGCCAGCTAAATTGGGCTTAAAACTTCATTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* *
11270498 GGCCAGATAAACTAGGCTTAAAGCGTCATTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* **
11270531 GGCCAGATAAATTGGGCTTAAAGCTTTGTTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* *
11270564 GGCCAGGTAAACTGGGCTTAAAGCTTCATTAAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
*
11270597 GACCAGATAAACTGGGCTTAAAGCTTCATTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* * *
11270630 GGCCAGATAAACTGCGCTTAAAACTTCATTGAC
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* *
11270663 GGCTAGATAAACTGGGCTTAAAGTTTCATTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* *
11270696 AGCCAGATAAACTGGGCTTAAATCTTCATTGA-
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
* * *
11270728 GAGCCAAATAAACTAGGCTTAAATCTTCATTTGA-
1 G-GCCAGATAAACTGGGCTTAAAGCTTCA-TTGAT
* * *
11270762 GGCCATATAAACTGGACTTAAAGCATCATTGAT
1 GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
11270795 GGCCAGATAAACTGGGCTTAAAG
1 GGCCAGATAAACTGGGCTTAAAG
11270818 TTTTTTCTTT
Statistics
Matches: 301, Mismatches: 48, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
32 23 0.08
33 273 0.91
34 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (33 bp):
GGCCAGATAAACTGGGCTTAAAGCTTCATTGAT
Found at i:11271626 original size:15 final size:14
Alignment explanation
Indices: 11271606--11271636 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
11271596 CACCCATTCA
11271606 TTTCTTTCTTTTTTT
1 TTTCTTT-TTTTTTT
11271621 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
11271635 TT
1 TT
11271637 GCATCTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:11271630 original size:10 final size:11
Alignment explanation
Indices: 11271610--11271634 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11271600 CATTCATTTC
11271610 TTTCTTTTTTT
1 TTTCTTTTTTT
11271621 TTTCTTTTTTT
1 TTTCTTTTTTT
11271632 TTT
1 TTT
11271635 TTGCATCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:11274363 original size:5 final size:5
Alignment explanation
Indices: 11274349--11274393 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
11274339 GACTGTTTGC
* *
11274349 AAAA- AAAAT AAAAT AAAAT AAATT AAATT AAATAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT
11274394 CAATTAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
4 4 0.11
5 29 0.78
6 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:11274387 original size:21 final size:21
Alignment explanation
Indices: 11274349--11274402 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
11274339 GACTGTTTGC
*
11274349 AAAA-AAAATAAA-ATAAAAT
1 AAAATAAATTAAATATAAAAT
*
11274368 AAATTAAATTAAATATAAAAT
1 AAAATAAATTAAATATAAAAT
*
11274389 AAAATCAATTAAAT
1 AAAATAAATTAAAT
11274403 CCTACCATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.10
20 7 0.24
21 19 0.66
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAATTAAATATAAAAT
Found at i:11275482 original size:16 final size:15
Alignment explanation
Indices: 11275465--11275553 Score: 74
Period size: 16 Copynumber: 5.9 Consensus size: 15
11275455 TCTTTAGGAT
11275465 TTTTAGGATTTTGGA
1 TTTTAGGATTTTGGA
* *
11275480 TTTCAAGAATTTTGGA
1 TTT-TAGGATTTTGGA
* *
11275496 TTTTGGGGAGTTTGGA
1 TTTT-AGGATTTTGGA
*
11275512 TTTAAGGGATTTT-GA
1 TTTTA-GGATTTTGGA
**
11275527 TTTT-GGGGTTTGGA
1 TTTTAGGATTTTGGA
11275541 TTTTAGGATTTTG
1 TTTTAGGATTTTG
11275554 AAAATTAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
13 5 0.09
14 6 0.11
15 14 0.25
16 30 0.55
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.49
Consensus pattern (15 bp):
TTTTAGGATTTTGGA
Found at i:11275497 original size:32 final size:32
Alignment explanation
Indices: 11275461--11275553 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
11275451 TGTGTCTTTA
* *
11275461 GGATTTTTAGGATTTTGGATTTCAA-GAATTTT
1 GGATTTTGAGGAGTTTGGATTT-AAGGAATTTT
* *
11275493 GGATTTTGGGGAGTTTGGATTTAAGGGATTTT
1 GGATTTTGAGGAGTTTGGATTTAAGGAATTTT
*
11275525 -GATTTTG-GG-GTTTGGATTTTAGG-ATTTT
1 GGATTTTGAGGAGTTTGGATTTAAGGAATTTT
11275553 G
1 G
11275554 AAAATTAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
28 5 0.09
29 13 0.24
30 2 0.04
31 9 0.17
32 25 0.46
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.48
Consensus pattern (32 bp):
GGATTTTGAGGAGTTTGGATTTAAGGAATTTT
Found at i:11275795 original size:3 final size:3
Alignment explanation
Indices: 11275787--11275816 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
11275777 ACAGGAAAAC
11275787 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
11275817 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11280753 original size:10 final size:10
Alignment explanation
Indices: 11280738--11280786 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
11280728 CTAACCAAAT
*
11280738 TAACTAACTA
1 TAACTAACTC
*
11280748 TAACTAAATC
1 TAACTAACTC
*
11280758 TAACTACCTTC
1 TAACTAAC-TC
*
11280769 TAACTAACTT
1 TAACTAACTC
11280779 TAACTAAC
1 TAACTAAC
11280787 CATACAACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (10 bp):
TAACTAACTC
Found at i:11289284 original size:22 final size:22
Alignment explanation
Indices: 11289259--11289303 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11289249 TTGGTAGAGG
11289259 ATTTATTGATCAATAAAAAATA
1 ATTTATTGATCAATAAAAAATA
*
11289281 ATTTATTGATTAATAAAAAATA
1 ATTTATTGATCAATAAAAAATA
11289303 A
1 A
11289304 GAACATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
ATTTATTGATCAATAAAAAATA
Found at i:11289477 original size:15 final size:15
Alignment explanation
Indices: 11289457--11289549 Score: 54
Period size: 15 Copynumber: 6.4 Consensus size: 15
11289447 TTAATAAATA
11289457 ATATTATATCATAAT
1 ATATTATATCATAAT
11289472 ATATTA-AT-A-AAT
1 ATATTATATCATAAT
*
11289484 AATATTATATGAATAA-
1 -ATATTATAT-CATAAT
* *
11289500 ATAATATATTATTAAT
1 ATATTATATCA-TAAT
*
11289516 ATA--ATATCTTAAT
1 ATATTATATCATAAT
* * *
11289529 AAATAATATTATAAT
1 ATATTATATCATAAT
11289544 ATATTA
1 ATATTA
11289550 AAAATAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
12 3 0.05
13 13 0.22
14 9 0.15
15 29 0.48
16 4 0.07
17 2 0.03
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (15 bp):
ATATTATATCATAAT
Found at i:11289499 original size:46 final size:49
Alignment explanation
Indices: 11289428--11289717 Score: 175
Period size: 46 Copynumber: 6.3 Consensus size: 49
11289418 TATTATACTA
* * *
11289428 ATTAGTAAATAAAATTATATTAATAAAT-A-ATATTA-T-ATCATAATAT
1 ATTAATAAATAATATTATATGAATAAATAATATATTATTAAT-ATAATAT
11289474 ATTAATAAATAATATTATATGAATAAATAATATATTATTAATATAATAT
1 ATTAATAAATAATATTATATGAATAAATAATATATTATTAATATAATAT
*
11289523 CTTAATAAATAATATTATAAT-ATATTAAA-AATA-A-TATT-ATAT--TA-
1 ATTAATAAATAATATTAT-ATGA-A-TAAATAATATATTATTAATATAATAT
* * * * *
11289567 ATAAATAACATTATAATATATTAATAAATAATATACTATTAATA-AATAAT
1 ATTAATAA-ATAATATTATATGAATAAATAATATATTATTAATATAAT-AT
* * *
11289617 ATT-AT-AAT-ATATT-TA-AAAT-AATATTATATTAATAA-ATAATAT
1 ATTAATAAATAATATTATATGAATAAATAATATATTATTAATATAATAT
* * *
11289659 GA-TAATAAAT-ATCAATA-ATTTAATTAATAA-ATATTA-TAATAT--TAT
1 -ATTAATAAATAAT-ATTATA-TGAATAAATAATATATTATTAATATAATAT
11289704 ATTAATAAATAATA
1 ATTAATAAATAATA
11289718 GAAAGAATAA
Statistics
Matches: 198, Mismatches: 17, Indels: 59
0.72 0.06 0.22
Matches are distributed among these distances:
42 4 0.02
43 23 0.12
44 22 0.11
45 29 0.15
46 38 0.19
47 21 0.11
48 16 0.08
49 30 0.15
50 11 0.06
51 4 0.02
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (49 bp):
ATTAATAAATAATATTATATGAATAAATAATATATTATTAATATAATAT
Found at i:11289535 original size:49 final size:46
Alignment explanation
Indices: 11289428--11289541 Score: 149
Period size: 49 Copynumber: 2.4 Consensus size: 46
11289418 TATTATACTA
* * *
11289428 ATTAGTAAATAAAATTATATTAATAAATAATATTATATCATAATAT
1 ATTAATAAATAATATTATATGAATAAATAATATTATATCATAATAT
11289474 ATTAATAAATAATATTATATGAATAAATAATATATTATTAAT-ATAATAT
1 ATTAATAAATAATATTATATGAATAAAT-A-ATATTA-T-ATCATAATAT
*
11289523 CTTAATAAATAATATTATA
1 ATTAATAAATAATATTATA
11289542 ATATATTAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
46 25 0.42
47 1 0.02
48 6 0.10
49 26 0.43
50 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (46 bp):
ATTAATAAATAATATTATATGAATAAATAATATTATATCATAATAT
Found at i:11289597 original size:15 final size:15
Alignment explanation
Indices: 11289579--11289717 Score: 84
Period size: 15 Copynumber: 9.4 Consensus size: 15
11289569 AAATAACATT
11289579 ATAATATATTAATAA
1 ATAATATATTAATAA
11289594 ATAATATACTATTAATAA
1 AT-A-ATA-TATTAATAA
11289612 AT-A-ATATT-AT-A
1 ATAATATATTAATAA
*
11289623 AT-ATAT-TTAAAATA
1 ATAATATATTAATA-A
*
11289637 ATATTATATTAATAA
1 ATAATATATTAATAA
11289652 ATAATATGA-TAATAA
1 ATAATAT-ATTAATAA
*
11289667 AT-ATCAATAATTTAATTA
1 ATAAT--AT-A-TTAATAA
11289685 ATAA-ATATT-AT-A
1 ATAATATATTAATAA
*
11289697 ATATTATATTAATAA
1 ATAATATATTAATAA
11289712 ATAATA
1 ATAATA
11289718 GAAAGAATAA
Statistics
Matches: 98, Mismatches: 8, Indels: 36
0.69 0.06 0.25
Matches are distributed among these distances:
11 6 0.06
12 9 0.09
13 11 0.11
14 10 0.10
15 28 0.29
16 12 0.12
17 3 0.03
18 18 0.18
19 1 0.01
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAATATATTAATAA
Found at i:11289621 original size:81 final size:80
Alignment explanation
Indices: 11289500--11289717 Score: 284
Period size: 81 Copynumber: 2.8 Consensus size: 80
11289490 ATATGAATAA
*
11289500 ATAATATATTATTAATATAATAT-C-TTAATAAATAATATTATAATATATTAAAAATAATATTAT
1 ATAATATATTAATAA-ATAATATACATTAATAAATAATATTATAATATATTAAAAATAATATTAT
*
11289563 ATTAATAAATAACATT
65 ATTAATAAATAACATG
*
11289579 ATAATATATTAATAAATAATATACTATTAATAAATAATATTATAATATATTTAAAATAATATTAT
1 ATAATATATTAATAAATAATATAC-ATTAATAAATAATATTATAATATATTAAAAATAATATTAT
*
11289644 ATTAATAAATAATATG
65 ATTAATAAATAACATG
* * * * * *
11289660 ATAATA-AAT-ATCAATAATTTA-ATTAATAAATATTATAATATTATATTAATAAATAATA
1 ATAATATATTAATAAATAATATACATTAATAAATAATATTATAATATATTAA-AAATAATA
11289718 GAAAGAATAA
Statistics
Matches: 124, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
77 24 0.19
78 15 0.12
79 25 0.20
80 2 0.02
81 58 0.47
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (80 bp):
ATAATATATTAATAAATAATATACATTAATAAATAATATTATAATATATTAAAAATAATATTATA
TTAATAAATAACATG
Found at i:11289656 original size:18 final size:18
Alignment explanation
Indices: 11289428--11289717 Score: 187
Period size: 18 Copynumber: 15.8 Consensus size: 18
11289418 TATTATACTA
* *
11289428 ATTAGTAAATAAAATTAT
1 ATTAATAAATAATATTAT
11289446 ATTAATAAATAATA-T-T
1 ATTAATAAATAATATTAT
*
11289462 A-T-AT-CAT-A-A-TAT
1 ATTAATAAATAATATTAT
11289474 ATTAATAAATAATATTAT
1 ATTAATAAATAATATTAT
*
11289492 ATGAATAAATAATA-TATT
1 ATTAATAAATAATATTA-T
*
11289510 ATTAATATAAT-ATCTTA-
1 ATTAATA-AATAATATTAT
* * *
11289527 ATAAATAATATTATAATAT
1 ATTAATAA-ATAATATTAT
11289546 ATTAA-AAATAATATTAT
1 ATTAATAAATAATATTAT
11289563 ATTAATAAATAACATTATAATAT
1 ATTAATAAAT-A-A-TAT--TAT
11289586 ATTAATAAATAATA-TACT
1 ATTAATAAATAATATTA-T
11289604 ATTAATAAATAATATTAT
1 ATTAATAAATAATATTAT
*
11289622 AATATATTTAAAATAATATTAT
1 -AT-TA-AT-AAATAATATTAT
*
11289644 ATTAATAAATAATATGAT
1 ATTAATAAATAATATTAT
*
11289662 AATAAATATCAATAAT-TTA-
1 -ATTAATA--AATAATATTAT
11289681 ATTAATAAATATTATAATATTAT
1 ATTAAT--A-A--ATAATATTAT
11289704 ATTAATAAATAATA
1 ATTAATAAATAATA
11289718 GAAAGAATAA
Statistics
Matches: 218, Mismatches: 20, Indels: 68
0.71 0.07 0.22
Matches are distributed among these distances:
11 2 0.01
12 3 0.01
13 3 0.01
14 4 0.02
15 3 0.01
16 4 0.02
17 27 0.12
18 85 0.39
19 22 0.10
20 11 0.05
21 19 0.09
22 16 0.07
23 19 0.09
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (18 bp):
ATTAATAAATAATATTAT
Found at i:11289878 original size:25 final size:25
Alignment explanation
Indices: 11289814--11289881 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 25
11289804 TTTTTTAATA
11289814 TTAATAATTTTAATAATAAATAATTT
1 TTAAT-ATTTTAATAATAAATAATTT
** *
11289840 CGATATATTTTAATAATAAATAGTTT
1 TTA-ATATTTTAATAATAAATAATTT
11289866 TTAATATTTTAATAAT
1 TTAATATTTTAATAAT
11289882 TATATTAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 13 0.36
26 21 0.58
27 2 0.06
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (25 bp):
TTAATATTTTAATAATAAATAATTT
Found at i:11290032 original size:15 final size:14
Alignment explanation
Indices: 11289994--11290031 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
11289984 TAAAAAATAT
11289994 AAAT-ATTTTTCAA
1 AAATCATTTTTCAA
11290007 AAATCATTTTTCAA
1 AAATCATTTTTCAA
*
11290021 AAGTCATTTTT
1 AAATCATTTTT
11290032 TTGTAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (14 bp):
AAATCATTTTTCAA
Found at i:11290626 original size:16 final size:16
Alignment explanation
Indices: 11290605--11290636 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11290595 GATAATTTAT
11290605 TTGATGTATATAAATA
1 TTGATGTATATAAATA
11290621 TTGATGTATATAAATA
1 TTGATGTATATAAATA
11290637 CATCAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (16 bp):
TTGATGTATATAAATA
Found at i:11296050 original size:20 final size:21
Alignment explanation
Indices: 11296007--11296052 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
11295997 TAAACCCTTA
11296007 AAATATTATTTTTGTCCAATT
1 AAATATTATTTTTGTCCAATT
11296028 AAATCATTATTTTTGT-C-ATT
1 AAAT-ATTATTTTTGTCCAATT
11296048 AAATA
1 AAATA
11296053 AGTTTATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.04
20 7 0.29
21 5 0.21
22 11 0.46
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (21 bp):
AAATATTATTTTTGTCCAATT
Found at i:11296124 original size:83 final size:83
Alignment explanation
Indices: 11295963--11296123 Score: 270
Period size: 83 Copynumber: 2.0 Consensus size: 83
11295953 TGGTACTTTT
*
11295963 TTAAATAAGTTCATATATTTTTATTATATCAAATTAAACCCTTAAAATATTATTTTTGTCCAATT
1 TTAAATAAGTTCATATATTTTTATTATATCAAATTAAACCCTTAAAATATTATTTTTATCCAATT
11296028 AAATCATTATTTTTGTCA
66 AAATCATTATTTTTGTCA
* * *
11296046 TTAAATAAGTTTATATATTTTTATTATATCAAATTAAATCTTTAAAATATTATTTTTATCCAATT
1 TTAAATAAGTTCATATATTTTTATTATATCAAATTAAACCCTTAAAATATTATTTTTATCCAATT
*
11296111 AAATC-TTCTTTTT
66 AAATCATTATTTTT
11296124 TAAAATGATT
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
82 7 0.10
83 66 0.90
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.51
Consensus pattern (83 bp):
TTAAATAAGTTCATATATTTTTATTATATCAAATTAAACCCTTAAAATATTATTTTTATCCAATT
AAATCATTATTTTTGTCA
Found at i:11298418 original size:6 final size:6
Alignment explanation
Indices: 11298407--11298432 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11298397 TCTTTCTTTC
11298407 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
11298433 AAAGCAGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:11298735 original size:16 final size:16
Alignment explanation
Indices: 11298714--11298756 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
11298704 ATATAATAAA
11298714 TTATTTTATTT-TTTT
1 TTATTTTATTTCTTTT
11298729 GTTATTTATATTTCTTTT
1 -TTATTT-TATTTCTTTT
*
11298747 ATATTTTATT
1 TTATTTTATT
11298757 GCATGAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.42
17 10 0.42
18 4 0.17
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (16 bp):
TTATTTTATTTCTTTT
Found at i:11299422 original size:2 final size:2
Alignment explanation
Indices: 11299417--11299442 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11299407 TTATATTGCA
11299417 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11299443 TTGATAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11302440 original size:20 final size:20
Alignment explanation
Indices: 11302417--11302454 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11302407 AAATAATTGT
* *
11302417 TTAAAATTTAATACTATTAC
1 TTAAAATTCAAAACTATTAC
11302437 TTAAAATTCAAAACTATT
1 TTAAAATTCAAAACTATT
11302455 TCATTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAATTCAAAACTATTAC
Found at i:11304577 original size:73 final size:72
Alignment explanation
Indices: 11304497--11304790 Score: 276
Period size: 73 Copynumber: 4.1 Consensus size: 72
11304487 TGTTATTTAT
** * * * ***
11304497 AATTTTAACAACTATTACATTTTTAAGATAAAGAAACATAGTGGTTGTTGAAATCATATTTTTGG
1 AATTTTAACAAAAATCACATTTTTAAGATAAA-AAATATAGTGGATGTTGAAATCATATTTTCAA
11304562 AATTCTAA
65 AATTCTAA
* * * *
11304570 AATTTTAACAAAAATCAAAATTTTAAAAT-AAAAATA-A-TGGATGTTGAAA-CTTGATTTTCAA
1 AATTTTAACAAAAATCACATTTTTAAGATAAAAAATATAGTGGATGTTGAAATCAT-ATTTTCAA
* **
11304631 AATTTTTT
65 AATTCTAA
* * * *
11304639 AATTTTAACAAAAATCACATTTTTAAGATAAAAAAATAAAGTGGATATTGAAATTATAATTTT-G
1 AATTTTAACAAAAATCACATTTTTAAGAT-AAAAAATATAGTGGATGTTGAAATCAT-ATTTTCA
*
11304703 AAATTCTTA
64 AAATTCTAA
* ** * *
11304712 AATTTTAACAAAACT-ATGTTTTTAAGATAAAAAATATAGTGAATGTTGAAATTATATTTTCAAA
1 AATTTTAACAAAAATCACATTTTTAAGATAAAAAATATAGTGGATGTTGAAATCATATTTTCAAA
*
11304776 ATTTTAA
66 ATTCTAA
11304783 AATTTTAA
1 AATTTTAA
11304791 TAAAGATTGT
Statistics
Matches: 180, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
68 2 0.01
69 47 0.26
70 6 0.03
71 50 0.28
72 14 0.08
73 55 0.31
74 6 0.03
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (72 bp):
AATTTTAACAAAAATCACATTTTTAAGATAAAAAATATAGTGGATGTTGAAATCATATTTTCAAA
ATTCTAA
Done.