Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 51 of 117
Found at i:11640065 original size:18 final size:19
Alignment explanation
Indices: 11640044--11640094 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 19
11640034 AAAAAAAGAA
11640044 GAAAAAAAGTG-AAAAAGT
1 GAAAAAAAGTGAAAAAAGT
*
11640062 G-AAAAAGGTGAAAAAAGT
1 GAAAAAAAGTGAAAAAAGT
11640080 G-AAAAAA-TGAAAAAA
1 GAAAAAAAGTGAAAAAA
11640095 AAAAAAGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.69, C:0.00, G:0.22, T:0.10
Consensus pattern (19 bp):
GAAAAAAAGTGAAAAAAGT
Found at i:11640066 original size:7 final size:8
Alignment explanation
Indices: 11640047--11640093 Score: 67
Period size: 8 Copynumber: 5.6 Consensus size: 8
11640037 AAAAGAAGAA
11640047 AAAAAGTG
1 AAAAAGTG
11640055 AAAAAGTG
1 AAAAAGTG
11640063 AAAAAGGTG
1 AAAAA-GTG
11640072 AAAAAAGTG
1 -AAAAAGTG
*
11640081 AAAAAATG
1 AAAAAGTG
11640089 AAAAA
1 AAAAA
11640094 AAAAAAAGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 25 0.69
9 6 0.17
10 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (8 bp):
AAAAAGTG
Found at i:11640066 original size:26 final size:25
Alignment explanation
Indices: 11640037--11640100 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
11640027 TAAATAAAAA
*
11640037 AAAAGAAGAAAAAAAGTGAAAAAGTG
1 AAAA-AAGAAAAAAAGTGAAAAAATG
* *
11640063 AAAAAGGTGAAAAAAGTGAAAAAATG
1 AAAAAAG-AAAAAAAGTGAAAAAATG
11640089 AAAAAA-AAAAAA
1 AAAAAAGAAAAAA
11640101 GATAACTCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (25 bp):
AAAAAAGAAAAAAAGTGAAAAAATG
Found at i:11641314 original size:49 final size:50
Alignment explanation
Indices: 11641261--11641369 Score: 143
Period size: 49 Copynumber: 2.2 Consensus size: 50
11641251 GTACCTTTTT
*
11641261 ATTTTTAAAGGTTCAATACTTTTATTGAGTAA-GAGC-TTTTTGGTTG-CGA
1 ATTTTTAAAGGTTCAATACTTTTATTGAG-AATGAGCTTTTTTGG-TGACAA
* **
11641310 ATTTTTAAAGTTTCAATGTTTTTATTGAGAATGAGCTTTTTTGGTGACAA
1 ATTTTTAAAGGTTCAATACTTTTATTGAGAATGAGCTTTTTTGGTGACAA
11641360 ATTTTTAAAG
1 ATTTTTAAAG
11641370 TATCAAAGCC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
48 2 0.04
49 32 0.60
50 19 0.36
ACGTcount: A:0.28, C:0.06, G:0.18, T:0.47
Consensus pattern (50 bp):
ATTTTTAAAGGTTCAATACTTTTATTGAGAATGAGCTTTTTTGGTGACAA
Found at i:11641420 original size:44 final size:44
Alignment explanation
Indices: 11641361--11641477 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 44
11641351 TGGTGACAAA
* **
11641361 TTTTTAAAGTATCAAAGCCTATGTTTGGGGGGAGCATTTTAAAT
1 TTTTTAAAGTTTCAAAGCCTATGTTAAGGGGGAGCATTTTAAAT
* * * *
11641405 TTTTTAAAGTTTCAAAGTCTGTGTTAATGGGGAGTATTTTAAAT
1 TTTTTAAAGTTTCAAAGCCTATGTTAAGGGGGAGCATTTTAAAT
* *
11641449 TTTTTAAAGTTTCAAAACCTCTGTTAAGG
1 TTTTTAAAGTTTCAAAGCCTATGTTAAGG
11641478 AAAGTTTCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (44 bp):
TTTTTAAAGTTTCAAAGCCTATGTTAAGGGGGAGCATTTTAAAT
Found at i:11641528 original size:44 final size:43
Alignment explanation
Indices: 11641478--11641644 Score: 154
Period size: 44 Copynumber: 3.8 Consensus size: 43
11641468 TCTGTTAAGG
* * *
11641478 AAAGTTTCAAAACTTCTACTAAAGGATAGCCTTTTAAATTCTTC
1 AAAGTTTCAAAGCTTCTATTAAAGGAAAGCCTTTTAAATT-TTC
* * * ** *
11641522 AAAGTTTTAAAGCCTCCATTAAAGGGGAGCATTTTAAATTTTC
1 AAAGTTTCAAAGCTTCTATTAAAGGAAAGCCTTTTAAATTTTC
* * * * *
11641565 TAAATTTTCAAAGCTTTTATTAAGGGACATCCTTTTAAAATTTTC
1 -AAAGTTTCAAAGCTTCTATTAAAGGAAAGCCTTTT-AAATTTTC
* * *
11641610 AAAATTTCAAAGCTTCTGTTAAAAGAAAGCCTTTT
1 AAAGTTTCAAAGCTTCTATTAAAGGAAAGCCTTTT
11641645 TGATTTTTCT
Statistics
Matches: 96, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
43 3 0.03
44 85 0.89
45 8 0.08
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (43 bp):
AAAGTTTCAAAGCTTCTATTAAAGGAAAGCCTTTTAAATTTTC
Found at i:11641921 original size:18 final size:19
Alignment explanation
Indices: 11641880--11641921 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
11641870 CTTATTATTA
11641880 TTATTGTTAGTATTAATTT
1 TTATTGTTAGTATTAATTT
* * *
11641899 CTATT-TTAGTTTTAGTTT
1 TTATTGTTAGTATTAATTT
11641917 TTATT
1 TTATT
11641922 ATTATTACTT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (19 bp):
TTATTGTTAGTATTAATTT
Found at i:11642451 original size:28 final size:29
Alignment explanation
Indices: 11642390--11642453 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
11642380 TTTTTGGAAT
11642390 TTTGGAAGTTGAGTTGAATTTTCTAGGATA
1 TTTGG-AGTTGAGTTGAATTTTCTAGGATA
* * * *
11642420 TTTGGAGTTGGGTTTAA-TTTCTAGGTTC
1 TTTGGAGTTGAGTTGAATTTTCTAGGATA
11642448 TTTGGA
1 TTTGGA
11642454 AATTTATGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 15 0.50
29 10 0.33
30 5 0.17
ACGTcount: A:0.20, C:0.05, G:0.28, T:0.47
Consensus pattern (29 bp):
TTTGGAGTTGAGTTGAATTTTCTAGGATA
Found at i:11643030 original size:12 final size:12
Alignment explanation
Indices: 11643013--11643063 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
11643003 AAAACTTTTG
11643013 TATGATTTTTAT
1 TATGATTTTTAT
*
11643025 TATGATATTTTTT
1 TATGAT-TTTTAT
*
11643038 GTATGATCTTTAT
1 -TATGATTTTTAT
*
11643051 TATGATATTTAT
1 TATGATTTTTAT
11643063 T
1 T
11643064 TCATTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 18 0.55
13 9 0.27
14 6 0.18
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (12 bp):
TATGATTTTTAT
Found at i:11643042 original size:26 final size:26
Alignment explanation
Indices: 11643008--11643060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11642998 AGAAAAAAAC
*
11643008 TTTTGTATGATTTTTATTATGATATT
1 TTTTGTATGATCTTTATTATGATATT
11643034 TTTTGTATGATCTTTATTATGATATT
1 TTTTGTATGATCTTTATTATGATATT
11643060 T
1 T
11643061 ATTTCATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.64
Consensus pattern (26 bp):
TTTTGTATGATCTTTATTATGATATT
Found at i:11643075 original size:26 final size:26
Alignment explanation
Indices: 11643008--11643076 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
11642998 AGAAAAAAAC
*
11643008 TTTTGTATGATTTTTATTATGATATT
1 TTTTGCATGATTTTTATTATGATATT
* *
11643034 TTTTGTATGATCTTTATTATGATATT
1 TTTTGCATGATTTTTATTATGATATT
*
11643060 TATTT-CATTATTTTTAT
1 T-TTTGCATGATTTTTAT
11643077 ATTTATTGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 35 0.92
27 3 0.08
ACGTcount: A:0.23, C:0.03, G:0.09, T:0.65
Consensus pattern (26 bp):
TTTTGCATGATTTTTATTATGATATT
Found at i:11643092 original size:20 final size:20
Alignment explanation
Indices: 11643055--11643092 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11643045 CTTTATTATG
* *
11643055 ATATTTATTTCATTATTTTT
1 ATATTTATTGCATGATTTTT
11643075 ATATTTATTGCATGATTT
1 ATATTTATTGCATGATTT
11643093 GATATATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (20 bp):
ATATTTATTGCATGATTTTT
Found at i:11643105 original size:18 final size:17
Alignment explanation
Indices: 11643082--11643145 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 17
11643072 TTTATATTTA
11643082 TTGCATGATTTGATATAT
1 TTGCATGATTTGATAT-T
*
11643100 TTGCATGGACTTT-ATTTT
1 TTGCAT-GA-TTTGATATT
*
11643118 TTGCATAATTATGATATT
1 TTGCATGATT-TGATATT
11643136 TTCGCATGAT
1 TT-GCATGAT
11643146 ATCTTAGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
16 2 0.05
17 2 0.05
18 19 0.51
19 11 0.30
20 3 0.08
ACGTcount: A:0.25, C:0.09, G:0.16, T:0.50
Consensus pattern (17 bp):
TTGCATGATTTGATATT
Found at i:11646304 original size:22 final size:22
Alignment explanation
Indices: 11646279--11646320 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
11646269 AAACATTCAG
11646279 ATTAGATGAATTTTC-ATTTTGA
1 ATTA-ATGAATTTTCAATTTTGA
*
11646301 ATTAATTAATTTTCAATTTT
1 ATTAATGAATTTTCAATTTT
11646321 CAATAGGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
ATTAATGAATTTTCAATTTTGA
Found at i:11647447 original size:9 final size:9
Alignment explanation
Indices: 11647433--11647457 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
11647423 TTTTGTTTTG
11647433 ATGTGACAA
1 ATGTGACAA
11647442 ATGTGACAA
1 ATGTGACAA
11647451 ATGTGAC
1 ATGTGAC
11647458 CACTGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (9 bp):
ATGTGACAA
Found at i:11654018 original size:31 final size:30
Alignment explanation
Indices: 11653983--11654043 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
11653973 AATGAAAATG
11653983 CTTTTTGCCTAAAAATATAAATGTTCAATTA
1 CTTTTTGCCTAAAAATA-AAATGTTCAATTA
***
11654014 CTTTTTTTTTAAAAATAAAATGTTCAATTA
1 CTTTTTGCCTAAAAATAAAATGTTCAATTA
11654044 TTAGATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (30 bp):
CTTTTTGCCTAAAAATAAAATGTTCAATTA
Found at i:11654724 original size:24 final size:23
Alignment explanation
Indices: 11654697--11654743 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
11654687 CTACCATCTC
11654697 TGCTACAAACTTCGATTTCCTCTA
1 TGCT-CAAACTTCGATTTCCTCTA
* * *
11654721 TGCTGAAACTTTGATTTCTTCTA
1 TGCTCAAACTTCGATTTCCTCTA
11654744 CTTGTAGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (23 bp):
TGCTCAAACTTCGATTTCCTCTA
Found at i:11664703 original size:30 final size:30
Alignment explanation
Indices: 11664656--11664712 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
11664646 CTATGACAGG
*
11664656 TAAAGTTACCAATTTGGAAGAAAAAGTAGC
1 TAAAGTTACCAAGTTGGAAGAAAAAGTAGC
11664686 TAAAGTGT-CCAAGTTGGAAGAAAAAGT
1 TAAAGT-TACCAAGTTGGAAGAAAAAGT
11664713 TTCAAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (30 bp):
TAAAGTTACCAAGTTGGAAGAAAAAGTAGC
Found at i:11664721 original size:30 final size:30
Alignment explanation
Indices: 11664664--11664722 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
11664654 GGTAAAGTTA
* *
11664664 CCAATTTGGAAGAAAAAGTAGCTAAAGTGT
1 CCAAGTTGGAAGAAAAAGTAGCAAAAGTGT
**
11664694 CCAAGTTGGAAGAAAAAGTTTCAAAAGTG
1 CCAAGTTGGAAGAAAAAGTAGCAAAAGTG
11664723 AGTGAACTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (30 bp):
CCAAGTTGGAAGAAAAAGTAGCAAAAGTGT
Found at i:11672130 original size:36 final size:36
Alignment explanation
Indices: 11672060--11672130 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
11672050 TTATCTATTA
* **
11672060 AGACAAGTACTAAACCTAACGCTTACATCCAAAATG
1 AGACAAGTACTAAACCTAACACTTACATAAAAAATG
* * *
11672096 AGACCAGTACTAAATCTAACATTTACATAAAAAAT
1 AGACAAGTACTAAACCTAACACTTACATAAAAAAT
11672131 TTGACTTTGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.08, T:0.23
Consensus pattern (36 bp):
AGACAAGTACTAAACCTAACACTTACATAAAAAATG
Found at i:11673867 original size:16 final size:16
Alignment explanation
Indices: 11673846--11673879 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
11673836 TAAATAACTC
11673846 AATAAA-AATATATAAA
1 AATAAATAATA-ATAAA
11673862 AATAAATAATAATAAA
1 AATAAATAATAATAAA
11673878 AA
1 AA
11673880 AAAGAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAAATAATAATAAA
Found at i:11675473 original size:16 final size:17
Alignment explanation
Indices: 11675445--11675476 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11675435 TTATTATTAT
11675445 TTTTTTGGTTCTTTTTC
1 TTTTTTGGTTCTTTTTC
11675462 TTTTTTGG-TCTTTTT
1 TTTTTTGGTTCTTTTT
11675477 GGCCAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.00, C:0.09, G:0.12, T:0.78
Consensus pattern (17 bp):
TTTTTTGGTTCTTTTTC
Found at i:11676657 original size:18 final size:17
Alignment explanation
Indices: 11676619--11676665 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
11676609 TAGAATAATG
11676619 AATGAAAAA-AATAAAT
1 AATGAAAAATAATAAAT
11676635 AATGAAAAATGAATAAA-
1 AATGAAAAAT-AATAAAT
11676652 ATATGATAAAATAA
1 A-ATGA-AAAATAA
11676666 CAATAAAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 9 0.33
17 1 0.04
18 12 0.44
19 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AATGAAAAATAATAAAT
Found at i:11677049 original size:3 final size:3
Alignment explanation
Indices: 11677036--11677067 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
11677026 GAATTAAATA
11677036 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A
11677068 CAATTGGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11684579 original size:43 final size:43
Alignment explanation
Indices: 11684510--11684600 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
11684500 CTAATAGAAC
11684510 CTAAAGATAAGCTAATTAAGCCCTATAAGAGGTTATTGAATTA
1 CTAAAGATAAGCTAATTAAGCCCTATAAGAGGTTATTGAATTA
* * *
11684553 CTAAAGATAAGCTAATTGATCTCTATAAGAGGTTATTGAATTA
1 CTAAAGATAAGCTAATTAAGCCCTATAAGAGGTTATTGAATTA
*
11684596 GTAAA
1 CTAAA
11684601 TTTGAAAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (43 bp):
CTAAAGATAAGCTAATTAAGCCCTATAAGAGGTTATTGAATTA
Found at i:11688908 original size:114 final size:113
Alignment explanation
Indices: 11688773--11688983 Score: 325
Period size: 114 Copynumber: 1.9 Consensus size: 113
11688763 AGTTTTTTTT
* *
11688773 TTTTTAAATTGTTGAGTCTTTACATAAATG-AGCATTCATTATCAAGATTCATAAGTCCTTCAGG
1 TTTTTAAATTGTTGAGCCTTTACATAAA-GAAGCATTCATTATCAAGATTCATAAGTCCTCCAGG
* *
11688837 CAGAATATTTTAAATTTTCAAAAGTTGTGGAGCTTTTACTTAAAGGAAC
65 CAAAATATTTTAAATTTTCAAAAGTTGTCGAGCTTTTACTTAAAGGAAC
* * *
11688886 TTTTTAAAGTTGTTGAGCCTTTACTTAGAGAAGCATTCATTATCAAGATTCATAAGTTCTCCAGG
1 TTTTTAAA-TTGTTGAGCCTTTACATAAAGAAGCATTCATTATCAAGATTCATAAGTCCTCCAGG
*
11688951 CAAAATATTTTAAATTTTTAAAAGTTGTCGAGC
65 CAAAATATTTTAAATTTTCAAAAGTTGTCGAGC
11688984 CTCTGCTTAG
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
113 9 0.10
114 79 0.90
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (113 bp):
TTTTTAAATTGTTGAGCCTTTACATAAAGAAGCATTCATTATCAAGATTCATAAGTCCTCCAGGC
AAAATATTTTAAATTTTCAAAAGTTGTCGAGCTTTTACTTAAAGGAAC
Found at i:11689029 original size:45 final size:44
Alignment explanation
Indices: 11688958--11689230 Score: 158
Period size: 44 Copynumber: 6.2 Consensus size: 44
11688948 AGGCAAAATA
* * *
11688958 TTTTAAA-TTTTTAAAAGTTGTCGAGCCTCTGCTTAGAGGAGCC
1 TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
** * * **
11689001 TTTTCAGTTTTTTTAAAAATTGTTGAGCCTTTATTTAGAGGAGTG
1 TTTT-AAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
* * * *
11689046 TTTTAAATTTTTT-AAAATTATTGAGCTTCTGTTTAGAGAAACC
1 TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
* * * * ** * *
11689089 TTTTAAA-TTTTTAAAAGTTATTAAGCCTTTACTTAAAAGAGCC
1 TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
* * * ** ** *
11689132 TTTTTAAA-TCTTTAAAAGTTATCAAGCCTCTACTTAGAGGAGCT
1 -TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
** * * * * * *
11689176 TTTTAAAAGTTTCAAAAGTTGTTAAGCCTCTATTTAGAGAAGCAT
1 TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGC-C
11689221 TTTTAAATTT
1 TTTTAAATTT
11689231 CAAATGTTGT
Statistics
Matches: 180, Mismatches: 44, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
42 5 0.03
43 60 0.33
44 73 0.41
45 42 0.23
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (44 bp):
TTTTAAATTTTTTAAAAATTGTTGAGCCTCTGTTTAGAGGAGCC
Found at i:11689071 original size:43 final size:43
Alignment explanation
Indices: 11689009--11689119 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
11688999 CCTTTTCAGT
* * ***
11689009 TTTTTTAAAAATTGTTGAGCCTTTATTTAGAGGAGTGTTTTAAA
1 TTTTTT-AAAATTATTGAGCCTTTATTTAGAGAAACCTTTTAAA
*
11689053 TTTTTTAAAATTATTGAG-CTTCTGTTTAGAGAAACCTTTTAAA
1 TTTTTTAAAATTATTGAGCCTT-TATTTAGAGAAACCTTTTAAA
*
11689096 -TTTTTAAAAGTTATTAAGCCTTTA
1 TTTTTTAAAA-TTATTGAGCCTTTA
11689120 CTTAAAAGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 12 0.21
43 35 0.62
44 9 0.16
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.48
Consensus pattern (43 bp):
TTTTTTAAAATTATTGAGCCTTTATTTAGAGAAACCTTTTAAA
Found at i:11689213 original size:44 final size:44
Alignment explanation
Indices: 11689026--11689234 Score: 162
Period size: 44 Copynumber: 4.8 Consensus size: 44
11689016 AAAATTGTTG
* * * *
11689026 AGCCTTTATTTAGAGGAG-TGTTTTAAATTTTTTAAAA-TTATTG
1 AGCCTCTATTTAGAGGAGCT-TTTTAAAATTTTCAAAAGTTATTA
* * * * * *
11689069 AGCTTCTGTTTAGAGAAACCTTTT-AAATTTTTAAAAGTTATTA
1 AGCCTCTATTTAGAGGAGCTTTTTAAAATTTTCAAAAGTTATTA
* * * * *
11689112 AGCCTTTACTTAAAAGAGCCTTTTT-AAATCTTT-AAAAGTTATCA
1 AGCCTCTATTTAGAGGAG-CTTTTTAAAAT-TTTCAAAAGTTATTA
* * *
11689156 AGCCTCTACTTAGAGGAGCTTTTTAAAAGTTTCAAAAGTTGTTA
1 AGCCTCTATTTAGAGGAGCTTTTTAAAATTTTCAAAAGTTATTA
*
11689200 AGCCTCTATTTAGAGAAGCATTTTT-AAA-TTTCAAA
1 AGCCTCTATTTAGAGGAGC-TTTTTAAAATTTTCAAA
11689235 TGTTGTCAAT
Statistics
Matches: 133, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
42 11 0.08
43 48 0.36
44 66 0.50
45 8 0.06
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (44 bp):
AGCCTCTATTTAGAGGAGCTTTTTAAAATTTTCAAAAGTTATTA
Found at i:11689225 original size:88 final size:87
Alignment explanation
Indices: 11688958--11689230 Score: 257
Period size: 88 Copynumber: 3.1 Consensus size: 87
11688948 AGGCAAAATA
* * *** *
11688958 TTTTAAATTTTTAAAAGTTGTCGAGCCTCTGCTTAGAGGAGCCTTTTCAGTTTTTTTAAAAATTG
1 TTTTAAATTTTTAAAAGTTATCGAGCCTCTGCTTAGAGGAG-CTTTTTAAAATTTTTAAAAGTTG
* *
11689023 TTGAGCCTTTATTTAGAGGAG-T
65 TTAAGCCTTTATTTAGAGAAGCT
* * * * * *
11689045 GTTTTAAATTTTTTAAAA-TTATTGAGCTTCTGTTTAGAGAAACCTTTT-AAATTTTTAAAAGTT
1 -TTTTAAA-TTTTTAAAAGTTATCGAGCCTCTGCTTAGAGGAGCTTTTTAAAATTTTTAAAAGTT
* * *
11689108 ATTAAGCCTTTACTTA-AAAGAGCCT
64 GTTAAGCCTTTATTTAGAGA-AG-CT
* * * * *
11689133 TTTTAAATCTTTAAAAGTTATCAAGCCTCTACTTAGAGGAGCTTTTTAAAAGTTTCAAAAGTTGT
1 TTTTAAATTTTTAAAAGTTATCGAGCCTCTGCTTAGAGGAGCTTTTTAAAATTTTTAAAAGTTGT
*
11689198 TAAGCCTCTATTTAGAGAAGCAT
66 TAAGCCTTTATTTAGAGAAGC-T
11689221 TTTTAAATTT
1 TTTTAAATTT
11689231 CAAATGTTGT
Statistics
Matches: 144, Mismatches: 33, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
85 1 0.01
86 34 0.24
87 34 0.24
88 64 0.44
89 11 0.08
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (87 bp):
TTTTAAATTTTTAAAAGTTATCGAGCCTCTGCTTAGAGGAGCTTTTTAAAATTTTTAAAAGTTGT
TAAGCCTTTATTTAGAGAAGCT
Found at i:11689273 original size:28 final size:28
Alignment explanation
Indices: 11689242--11689302 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
11689232 AAATGTTGTC
** * *
11689242 AATTTTTTTTTTTAGAAGAGCCTTTTTA
1 AATTTTTTTGCTTAGAAAAGCCTTTTAA
11689270 AA-TTTTTTGCTTAGAAAAGCCTTTTAA
1 AATTTTTTTGCTTAGAAAAGCCTTTTAA
11689297 AATTTT
1 AATTTT
11689303 CAAACATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (28 bp):
AATTTTTTTGCTTAGAAAAGCCTTTTAA
Found at i:11689382 original size:42 final size:42
Alignment explanation
Indices: 11689279--11689405 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 42
11689269 AAATTTTTTG
* **
11689279 CTTAGAAAAGCCTTTTAAAATTTTCAAACATTATTGAGCCTTGA
1 CTTAGAAAAGCCTTTTAAAATTTT-AAA-GTTATTGAGCCTCAA
** * * *
11689323 CTTAGATGAGTCATTTAAAATTTTAAAGTTATTGAGTCTCAA
1 CTTAGAAAAGCCTTTTAAAATTTTAAAGTTATTGAGCCTCAA
* * *
11689365 CTTATAAAAGCCTTTTAAATTTCTTTAAGTTATTGAGCCTC
1 CTTAGAAAAGCCTTTTAAAATT-TTAAAGTTATTGAGCCTC
11689406 TGATGAAGAG
Statistics
Matches: 66, Mismatches: 16, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
42 27 0.41
43 19 0.29
44 20 0.30
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (42 bp):
CTTAGAAAAGCCTTTTAAAATTTTAAAGTTATTGAGCCTCAA
Found at i:11689434 original size:44 final size:46
Alignment explanation
Indices: 11689385--11689473 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 46
11689375 CCTTTTAAAT
* *
11689385 TTCTTT-AAGTTATTGAGCCTCTGATGA-AGAGAGC-TTTTAGTTTG
1 TTCTTTAAAATTATCGAGCCTCTGATGAGAG-GAGCATTTTAGTTTG
* *
11689429 TTCTTTAAAATTGTCGAGCCTTTGATGAGAGGAGCATTTTAGTTT
1 TTCTTTAAAATTATCGAGCCTCTGATGAGAGGAGCATTTTAGTTT
11689474 AATTTTTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 21 0.55
46 11 0.29
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (46 bp):
TTCTTTAAAATTATCGAGCCTCTGATGAGAGGAGCATTTTAGTTTG
Found at i:11689455 original size:45 final size:47
Alignment explanation
Indices: 11689399--11689504 Score: 123
Period size: 46 Copynumber: 2.3 Consensus size: 47
11689389 TTAAGTTATT
* *
11689399 GAGCCTCTGATGAAGA-GAGC-TTTTAGTTT-GTTCTTTAAA-ATTGTC
1 GAGCCTTTGATGAAGAGGAGCATTTTAGTTTAATT-TTTAAAGA-TGTC
*
11689444 GAGCCTTTGATG-AGAGGAGCATTTTAGTTTAATTTTTAAAGATGTT
1 GAGCCTTTGATGAAGAGGAGCATTTTAGTTTAATTTTTAAAGATGTC
*
11689490 GAGCCTTTAATGAAG
1 GAGCCTTTGATGAAG
11689505 GGGGCTATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
44 3 0.06
45 15 0.29
46 29 0.56
47 5 0.10
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (47 bp):
GAGCCTTTGATGAAGAGGAGCATTTTAGTTTAATTTTTAAAGATGTC
Found at i:11689752 original size:3 final size:3
Alignment explanation
Indices: 11689744--11689807 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
11689734 TTTGTTTATC
*
11689744 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11689792 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
11689808 AGTTTCTTCT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11690048 original size:11 final size:11
Alignment explanation
Indices: 11690034--11690064 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
11690024 TCAAAGCCAA
11690034 AGCCCTTTTTG
1 AGCCCTTTTTG
11690045 AGCCCTTTTTG
1 AGCCCTTTTTG
11690056 AGCCCTTTT
1 AGCCCTTTT
11690065 CAAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.29, G:0.16, T:0.45
Consensus pattern (11 bp):
AGCCCTTTTTG
Found at i:11690092 original size:17 final size:17
Alignment explanation
Indices: 11690065--11690110 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
11690055 GAGCCCTTTT
* *
11690065 CAAAAAAAAAAAAAATAA
1 CAAAACAAAAAAAAA-AG
11690083 CAAAACAAAAAAAAAAG
1 CAAAACAAAAAAAAAAG
11690100 CAAAACAAAAA
1 CAAAACAAAAA
11690111 TTAAGCCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.85, C:0.11, G:0.02, T:0.02
Consensus pattern (17 bp):
CAAAACAAAAAAAAAAG
Found at i:11690116 original size:16 final size:16
Alignment explanation
Indices: 11690069--11690116 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
11690059 CCTTTTCAAA
*
11690069 AAAAAAAAAAATAA-C
1 AAAACAAAAAATAAGC
*
11690084 AAAACAAAAAAAAAAGC
1 AAAAC-AAAAAATAAGC
*
11690101 AAAACAAAAATTAAGC
1 AAAACAAAAAATAAGC
11690117 CCTTAGTAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 4 0.15
16 17 0.63
17 6 0.22
ACGTcount: A:0.79, C:0.10, G:0.04, T:0.06
Consensus pattern (16 bp):
AAAACAAAAAATAAGC
Found at i:11690839 original size:9 final size:9
Alignment explanation
Indices: 11690825--11690849 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
11690815 AGAAATATCT
11690825 TAAAATAAA
1 TAAAATAAA
11690834 TAAAATAAA
1 TAAAATAAA
11690843 TAAAATA
1 TAAAATA
11690850 TAAAATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAATAAA
Found at i:11693077 original size:19 final size:19
Alignment explanation
Indices: 11693053--11693089 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11693043 AATATTCATC
*
11693053 TTTTTTTTATTTTTTTTTG
1 TTTTTTTCATTTTTTTTTG
*
11693072 TTTTTTTCCTTTTTTTTT
1 TTTTTTTCATTTTTTTTT
11693090 TCTTCTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.03, C:0.05, G:0.03, T:0.89
Consensus pattern (19 bp):
TTTTTTTCATTTTTTTTTG
Found at i:11694678 original size:124 final size:123
Alignment explanation
Indices: 11694263--11694685 Score: 569
Period size: 124 Copynumber: 3.4 Consensus size: 123
11694253 ATGTGCACAT
* * * * * *
11694263 AATGAAATGTATGTACAACCTCATTATTTTCATATGTGAAAAATAATGAAATGAAAAGGTACAAT
1 AATGAAGTGTATGTACAACTTTATTATTTCCAAATGTGAAAAATAATGAAATCAAAAGGTACAAT
** * * * *
11694328 AACATTCAAAATCAATTTTTTTATGAAATTAACATTATCAATCAAATATTTGTACATGA
66 AACATTCAAAATCAA-AATTTTATGAAATTGACACTACCATTCAAATATTTGTACATGA
* ** **
11694387 AATGAAGTGTATGTACAACTTTATTATTTTCAAATGCAAAAAATAATGAAATGTGAAAGGTACAA
1 AATGAAGTGTATGTACAACTTTATTATTTCCAAATGTGAAAAATAATGAAAT-CAAAAGGTACAA
11694452 TAACATTCAAAAT-AAAATTTTTATGAAATTGACACTACCATTCAAATATTTGTACATGA
65 TAACATTCAAAATCAAAA-TTTTATGAAATTGACACTACCATTCAAATATTTGTACATGA
* * *
11694511 AATGAAGTGTATGTACAATTTTATTATTTCTAAATATGAAAAATAATGAAATACAAAAGGTACAA
1 AATGAAGTGTATGTACAACTTTATTATTTCCAAATGTGAAAAATAATGAAAT-CAAAAGGTACAA
** *
11694576 TAACATTCAAAATCAAAATTTTACAAAATTGACACTACCATTAAAATATTTGTACATGA
65 TAACATTCAAAATCAAAATTTTATGAAATTGACACTACCATTCAAATATTTGTACATGA
* * *
11694635 AATGAAGTGTATGTAAAACTTTATTATTTCCAAATGTGGAAAATGATGAAA
1 AATGAAGTGTATGTACAACTTTATTATTTCCAAATGTGAAAAATAATGAAA
11694686 GGAATGTAAA
Statistics
Matches: 264, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
124 237 0.90
125 27 0.10
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (123 bp):
AATGAAGTGTATGTACAACTTTATTATTTCCAAATGTGAAAAATAATGAAATCAAAAGGTACAAT
AACATTCAAAATCAAAATTTTATGAAATTGACACTACCATTCAAATATTTGTACATGA
Found at i:11696516 original size:18 final size:18
Alignment explanation
Indices: 11696482--11696515 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11696472 TAAATAACTC
11696482 AATAATAATATATAAAAT
1 AATAATAATATATAAAAT
11696500 AATAATAATA-ATAAAA
1 AATAATAATATATAAAA
11696516 ACAAAGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAATAATATATAAAAT
Found at i:11699571 original size:2 final size:2
Alignment explanation
Indices: 11699564--11699594 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11699554 GTATGTTGTA
11699564 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11699595 CATTATAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11704140 original size:2 final size:2
Alignment explanation
Indices: 11704133--11704165 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
11704123 ACATGACACA
11704133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
11704166 TTGGCCCAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11705994 original size:7 final size:7
Alignment explanation
Indices: 11705982--11706015 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
11705972 ATTTGCAATC
11705982 TTTATTT
1 TTTATTT
11705989 TTTATTT
1 TTTATTT
11705996 TTTA-TT
1 TTTATTT
11706002 TTTATTT
1 TTTATTT
*
11706009 TTCATTT
1 TTTATTT
11706016 GCTCTTCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTATTT
Found at i:11706003 original size:13 final size:13
Alignment explanation
Indices: 11705982--11706015 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
11705972 ATTTGCAATC
11705982 TTTATTTTTTATTT
1 TTTA-TTTTTATTT
11705996 TTTATTTTTATTT
1 TTTATTTTTATTT
*
11706009 TTCATTT
1 TTTATTT
11706016 GCTCTTCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:11707207 original size:2 final size:2
Alignment explanation
Indices: 11707200--11707230 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11707190 TTAATATACT
11707200 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11707231 TCCATTCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11715655 original size:14 final size:14
Alignment explanation
Indices: 11715632--11715674 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
11715622 GAGATTGATA
11715632 TTTTTT-TTTTACT
1 TTTTTTATTTTACT
*
11715645 TTTTTTATTTTAGT
1 TTTTTTATTTTACT
*
11715659 TTTTTTATTTTTCT
1 TTTTTTATTTTACT
11715673 TT
1 TT
11715675 AAATATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 6 0.23
14 20 0.77
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (14 bp):
TTTTTTATTTTACT
Found at i:11716905 original size:13 final size:14
Alignment explanation
Indices: 11716887--11716916 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
11716877 ATTGAAGAAT
11716887 TTAAATCTTA-AAA
1 TTAAATCTTATAAA
11716900 TTAAATCTTATAAA
1 TTAAATCTTATAAA
11716914 TTA
1 TTA
11716917 TTAGAAGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAAATCTTATAAA
Found at i:11718222 original size:34 final size:30
Alignment explanation
Indices: 11718158--11718215 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
11718148 CATTAACACA
*
11718158 TGTATGCATTTATTCATTCATACATTATTG
1 TGTATGCATTCATTCATTCATACATTATTG
*
11718188 TGTATGCATTCATTTATTCATACATTAT
1 TGTATGCATTCATTCATTCATACATTAT
11718216 AAATTGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.50
Consensus pattern (30 bp):
TGTATGCATTCATTCATTCATACATTATTG
Found at i:11720231 original size:22 final size:20
Alignment explanation
Indices: 11720206--11720245 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11720196 AAAAAATATG
11720206 AAAATGAAAAATATAAAAAGGT
1 AAAAT-AAAAA-ATAAAAAGGT
*
11720228 AAAATAAGAAATAAAAAG
1 AAAATAAAAAATAAAAAG
11720246 TTGAAACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 4 0.24
22 5 0.29
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.15
Consensus pattern (20 bp):
AAAATAAAAAATAAAAAGGT
Found at i:11722201 original size:32 final size:33
Alignment explanation
Indices: 11722165--11722262 Score: 94
Period size: 33 Copynumber: 3.0 Consensus size: 33
11722155 TTTGGCTTAG
* * *
11722165 TCCAAGTAATT-TCTTTTCTAACTTTAGTTTAA
1 TCCAAGTAATTGTATTTTCTAACTTCAGTTCAA
* * *
11722197 TCCAAATCATTGTATTTTTTAACTTCAGTTCAA
1 TCCAAGTAATTGTATTTTCTAACTTCAGTTCAA
* *
11722230 TCCAAGTCATTGTA-TTTCTGACTTCTA-TTCAA
1 TCCAAGTAATTGTATTTTCTAACTTC-AGTTCAA
11722262 T
1 T
11722263 TTAGGTTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
32 24 0.44
33 31 0.56
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (33 bp):
TCCAAGTAATTGTATTTTCTAACTTCAGTTCAA
Found at i:11722221 original size:33 final size:33
Alignment explanation
Indices: 11722178--11722262 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 33
11722168 AAGTAATTTC
* *
11722178 TTTTCTAACTTTAGTTTAATCCAAATCATTGTA
1 TTTTCTAACTTCAGTTCAATCCAAATCATTGTA
* *
11722211 TTTTTTAACTTCAGTTCAATCCAAGTCATTGTA
1 TTTTCTAACTTCAGTTCAATCCAAATCATTGTA
*
11722244 -TTTCTGACTTCTA-TTCAAT
1 TTTTCTAACTTC-AGTTCAAT
11722263 TTAGGTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
32 15 0.33
33 30 0.67
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (33 bp):
TTTTCTAACTTCAGTTCAATCCAAATCATTGTA
Found at i:11722398 original size:33 final size:33
Alignment explanation
Indices: 11722361--11722578 Score: 113
Period size: 33 Copynumber: 6.6 Consensus size: 33
11722351 TTCAGTCCAG
11722361 TCTAAGTCATTTCATTTTTAGACTTAGGCTTAA
1 TCTAAGTCATTTCATTTTTAGACTTAGGCTTAA
* * * * * *
11722394 TCTAAGTCTTTTCATTTTAAGACTTTGACTCAT
1 TCTAAGTCATTTCATTTTTAGACTTAGGCTTAA
* * *
11722427 TCCAAATCATTTTATTTTTTAG-CTTTA-G-TTAA
1 TCTAAGTCATTTCA-TTTTTAGAC-TTAGGCTTAA
* * ** *
11722459 GTCTAAGTCATTTCATTTTCAAACTTAGAATTTGA
1 -TCTAAGTCATTTCATTTTTAGACTTAG-GCTTAA
* * ** * * *
11722494 CCAAAGTCATTTCATTTCCA-ACCTTTGGCTCAT
1 TCTAAGTCATTTCATTTTTAGA-CTTAGGCTTAA
* ** *
11722527 TCCAAGTCATTTCATTTTTTTACTT-CGCTTTAA
1 TCTAAGTCATTTCATTTTTAGACTTAGGC-TTAA
*
11722560 TCTAAATCATTTCATTTTT
1 TCTAAGTCATTTCATTTTT
11722579 TAGCTTCGAC
Statistics
Matches: 134, Mismatches: 41, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
32 12 0.09
33 89 0.66
34 30 0.22
35 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.47
Consensus pattern (33 bp):
TCTAAGTCATTTCATTTTTAGACTTAGGCTTAA
Found at i:11722444 original size:99 final size:99
Alignment explanation
Indices: 11722306--11722486 Score: 229
Period size: 99 Copynumber: 1.8 Consensus size: 99
11722296 CCAAGTTATG
** *
11722306 TCATTTTAAGACTTCGACTCAATTCAGGTCATTTAATTTTCCAAATTCAGTCCAGTCTAAGTCAT
1 TCATTTTAAGACTTCGACTCAATTCAAATCATTTAATTTTCCAAATTCAGTCAAGTCTAAGTCAT
* *
11722371 TTCATTTTTAGACTTAGGCTTAATCTAAGTCTTT
66 TTCATTTTCAAACTTAGGCTTAATCTAAGTCTTT
* * ** ** * *
11722405 TCATTTTAAGACTTTGACTC-ATTCCAAATCATTTTATTTTTTAGCTTTAGTTAAGTCTAAGTCA
1 TCATTTTAAGACTTCGACTCAATT-CAAATCATTTAATTTTCCAAATTCAGTCAAGTCTAAGTCA
11722469 TTTCATTTTCAAACTTAG
65 TTTCATTTTCAAACTTAG
11722487 AATTTGACCA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
98 3 0.04
99 65 0.96
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.45
Consensus pattern (99 bp):
TCATTTTAAGACTTCGACTCAATTCAAATCATTTAATTTTCCAAATTCAGTCAAGTCTAAGTCAT
TTCATTTTCAAACTTAGGCTTAATCTAAGTCTTT
Found at i:11722595 original size:33 final size:33
Alignment explanation
Indices: 11722533--11722596 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
11722523 TCATTCCAAG
*
11722533 TCATTTCATTTTTTTACTTCGCTTTAATCTAAA
1 TCATTTCATTTTTTTACTTCGCTTCAATCTAAA
11722566 TCATTTCA-TTTTTTAGCTTCGAC-TCAATCTA
1 TCATTTCATTTTTTTA-CTTCG-CTTCAATCTA
11722597 GTTATTGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 7 0.25
33 20 0.71
34 1 0.04
ACGTcount: A:0.23, C:0.20, G:0.05, T:0.52
Consensus pattern (33 bp):
TCATTTCATTTTTTTACTTCGCTTCAATCTAAA
Found at i:11723599 original size:17 final size:19
Alignment explanation
Indices: 11723556--11723604 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 19
11723546 AAGCTATTCT
* *
11723556 AGAGAAAAAAGGAAGAGAG
1 AGAGAAAAAAGAAAGAGAA
*
11723575 AGA-AAAAAAAAAAG-GAA
1 AGAGAAAAAAGAAAGAGAA
11723592 AGAG-AAAAAGAAA
1 AGAGAAAAAAGAAA
11723605 TATTTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 13 0.52
18 9 0.36
19 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (19 bp):
AGAGAAAAAAGAAAGAGAA
Found at i:11723942 original size:39 final size:41
Alignment explanation
Indices: 11723896--11723983 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 41
11723886 AAAATTTTAA
*
11723896 AATATTTTAAAATT-AATCCTACCAAACTATTGAAAATTTT
1 AATATTTTAAAATTAAATCCTACCAAACTATTGAAAAGTTT
* * *
11723936 AA-ATTTTACAATTAAATCTTATCAAACTATTGAAAAGTTT
1 AATATTTTAAAATTAAATCCTACCAAACTATTGAAAAGTTT
11723976 AATATTTT
1 AATATTTT
11723984 TTATGAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 10 0.24
40 27 0.64
41 5 0.12
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.42
Consensus pattern (41 bp):
AATATTTTAAAATTAAATCCTACCAAACTATTGAAAAGTTT
Found at i:11725011 original size:16 final size:17
Alignment explanation
Indices: 11724987--11725019 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11724977 CTTTTTTACT
*
11724987 TTTTCTTTTTAT-TTTA
1 TTTTATTTTTATATTTA
11725003 TTTTATTTTTATATTTA
1 TTTTATTTTTATATTTA
11725020 ATAACTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATATTTA
Found at i:11725046 original size:18 final size:17
Alignment explanation
Indices: 11724981--11725047 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
11724971 GCCCTTCTTT
11724981 TTTACTTTTTCTTTTTAT-
1 TTTA-TTTTT-TTTTTATA
*
11724999 TTTATTTTATTTTTATA
1 TTTATTTTTTTTTTATA
***
11725016 TTTAATAACTTTTTTATAA
1 TTT-ATTTTTTTTTTAT-A
11725035 TTTATTTTTTTTT
1 TTTATTTTTTTTT
11725048 CTTTTGTGGA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
16 7 0.18
17 7 0.18
18 20 0.53
19 4 0.11
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTATTTTTTTTTTATA
Found at i:11737625 original size:23 final size:22
Alignment explanation
Indices: 11737592--11737636 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
11737582 TGCAACTCAA
11737592 CTTTTTTTTCTTT-TTGTCTTTT
1 CTTTTTTTTCTTTCTT-TCTTTT
11737614 CTTTTTTATTCTTTCTTTCTTTT
1 CTTTTTT-TTCTTTCTTTCTTTT
11737637 TAAGATGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.33
23 12 0.57
24 2 0.10
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (22 bp):
CTTTTTTTTCTTTCTTTCTTTT
Found at i:11738574 original size:23 final size:23
Alignment explanation
Indices: 11738532--11738580 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
11738522 ACAACTTATG
***
11738532 TTTCTTTTTTTTTTGCTTTTTCT
1 TTTCTTTTTTTTTCAATTTTTCT
*
11738555 TTTCTTTTTTTTTCAATTTTTTT
1 TTTCTTTTTTTTTCAATTTTTCT
11738578 TTT
1 TTT
11738581 TAATTTAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.04, C:0.10, G:0.02, T:0.84
Consensus pattern (23 bp):
TTTCTTTTTTTTTCAATTTTTCT
Found at i:11738982 original size:23 final size:22
Alignment explanation
Indices: 11738945--11738999 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
11738935 TTTTTTTTGG
*
11738945 TTTTTTGTTTCATTTTGTTCTCC
1 TTTTTTATTTCATTTTGTTCT-C
* *
11738968 TTTTTTATTTTATTTTTTTCTC
1 TTTTTTATTTCATTTTGTTCTC
11738990 TTTTTATATT
1 TTTTT-TATT
11739000 CTTTCTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.09, C:0.11, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTTTTATTTCATTTTGTTCTC
Found at i:11742046 original size:23 final size:22
Alignment explanation
Indices: 11742020--11742094 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 22
11742010 CTTATTTAAA
11742020 GGTTTTAAGATTTTAGGGTTTTG
1 GGTTTTAAGATTTTA-GGTTTTG
11742043 GGTTTTAAGATTTTA-GTTTTG
1 GGTTTTAAGATTTTAGGTTTTG
* *
11742064 AGATTTTAAGGTTTTAGAGTTTAT-
1 -GGTTTTAAGATTTTAG-GTTT-TG
11742088 GGTTTTA
1 GGTTTTA
11742095 GGGTTTTGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
21 6 0.13
22 13 0.29
23 21 0.47
24 4 0.09
25 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.53
Consensus pattern (22 bp):
GGTTTTAAGATTTTAGGTTTTG
Found at i:11742047 original size:7 final size:8
Alignment explanation
Indices: 11742020--11742244 Score: 60
Period size: 8 Copynumber: 28.6 Consensus size: 8
11742010 CTTATTTAAA
*
11742020 GGTTTTAA
1 GGTTTTAG
*
11742028 GATTTTAG
1 GGTTTTAG
11742036 GGTTTT-G
1 GGTTTTAG
*
11742043 GGTTTTAA
1 GGTTTTAG
*
11742051 GATTTTA-
1 GGTTTTAG
11742058 -GTTTT-G
1 GGTTTTAG
* *
11742064 AGATTTTAA
1 -GGTTTTAG
11742073 GGTTTTAG
1 GGTTTTAG
* *
11742081 AG-TTTAT
1 GGTTTTAG
11742088 GGTTTTAG
1 GGTTTTAG
11742096 GGTTTT-G
1 GGTTTTAG
* *
11742103 AGTTTTGAA
1 GGTTTT-AG
11742112 GG-TTTAG
1 GGTTTTAG
*
11742119 GG-TTTCG
1 GGTTTTAG
* *
11742126 AGTAATTAG
1 GGT-TTTAG
11742135 GG-TTTAG
1 GGTTTTAG
* *
11742142 GGTATTAA
1 GGTTTTAG
*
11742150 GATTTTAG
1 GGTTTTAG
*
11742158 AGTTTTAG
1 GGTTTTAG
**
11742166 GACTTT-G
1 GGTTTTAG
*
11742173 AGATTTTAG
1 -GGTTTTAG
11742182 GGTTTTAAG
1 GGTTTT-AG
11742191 GGTTTGTGAG
1 GGTTT-T-AG
*
11742201 AGTTTTAG
1 GGTTTTAG
* * *
11742209 GATTTGAAA
1 GGTTT-TAG
*
11742218 GGTTTTAA
1 GGTTTTAG
11742226 GG-TTT-G
1 GGTTTTAG
*
11742232 GATTTTAG
1 GGTTTTAG
11742240 GGTTT
1 GGTTT
11742245 CAAATTTTTT
Statistics
Matches: 152, Mismatches: 47, Indels: 36
0.65 0.20 0.15
Matches are distributed among these distances:
6 5 0.03
7 39 0.26
8 82 0.54
9 19 0.12
10 7 0.05
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.48
Consensus pattern (8 bp):
GGTTTTAG
Found at i:11742221 original size:27 final size:26
Alignment explanation
Indices: 11742171--11742222 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
11742161 TTTAGGACTT
* * *
11742171 TGAGATTTTAGGGTTTTAAGGGTTTG
1 TGAGATTTTAGGATTTGAAAGGTTTG
11742197 TGAGAGTTTTAGGATTTGAAAGGTTT
1 TGAGA-TTTTAGGATTTGAAAGGTTT
11742223 TAAGGTTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (26 bp):
TGAGATTTTAGGATTTGAAAGGTTTG
Found at i:11743138 original size:23 final size:24
Alignment explanation
Indices: 11743092--11743138 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
11743082 TTTCTTTAAG
*
11743092 ACTTTTCAAACATTTTTTTTTTTT
1 ACTTTTCAAACATTTTTTTCTTTT
11743116 ACTTTTC-AA-ATTTCTTTTCTTTT
1 ACTTTTCAAACATTT-TTTTCTTTT
11743139 TTTCTTACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 10 0.48
24 7 0.33
ACGTcount: A:0.19, C:0.15, G:0.00, T:0.66
Consensus pattern (24 bp):
ACTTTTCAAACATTTTTTTCTTTT
Found at i:11743139 original size:25 final size:24
Alignment explanation
Indices: 11743092--11743235 Score: 71
Period size: 24 Copynumber: 5.8 Consensus size: 24
11743082 TTTCTTTAAG
11743092 ACTTTTCAAACATTTTTTTTTTTT
1 ACTTTTCAAACATTTTTTTTTTTT
*
11743116 ACTTTTCAAATTTCTTTTCTTTTTTTCTT
1 ACTTTTCAAA---CATTT-TTTTTTT-TT
* ** *
11743145 ACTTGTCAAA-ACTTTTTTTGGTTC
1 ACTTTTCAAACA-TTTTTTTTTTTT
* * * *
11743169 ACTTTTCAAAGC-CTTTTTCTATTG
1 ACTTTTCAAA-CATTTTTTTTTTTT
* * *
11743193 ACTTTTCAAAGATATTCTTTTTTT
1 ACTTTTCAAACATTTTTTTTTTTT
*
11743217 A-TGTTTTAAAC-TTTTTTTT
1 ACT-TTTCAAACATTTTTTTT
11743236 AAAAGCTTTT
Statistics
Matches: 87, Mismatches: 23, Indels: 21
0.66 0.18 0.16
Matches are distributed among these distances:
23 7 0.08
24 50 0.57
25 5 0.06
26 3 0.03
27 4 0.05
28 7 0.08
29 11 0.13
ACGTcount: A:0.20, C:0.15, G:0.05, T:0.60
Consensus pattern (24 bp):
ACTTTTCAAACATTTTTTTTTTTT
Found at i:11743162 original size:29 final size:29
Alignment explanation
Indices: 11743106--11743163 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
11743096 TTCAAACATT
* * *
11743106 TTTTTTTTTTACTTTTCAAATTTCTTTTC
1 TTTTTTTCTTACTTGTCAAACTTCTTTTC
*
11743135 TTTTTTTCTTACTTGTCAAAACTTTTTTT
1 TTTTTTTCTTACTTGTC-AAACTTCTTTT
11743164 GGTTCACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.16, C:0.14, G:0.02, T:0.69
Consensus pattern (29 bp):
TTTTTTTCTTACTTGTCAAACTTCTTTTC
Found at i:11743317 original size:32 final size:32
Alignment explanation
Indices: 11743245--11743322 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 32
11743235 TAAAAGCTTT
**
11743245 TTTTTTTTTGTTTTGTTTTAACTTTTCAAAGC
1 TTTTTTTGAGTTTTGTTTTAACTTTTCAAAGC
* * **
11743277 TTTCTTTGAGTTTTGGTTTTAGCTTTTTGAAG-
1 TTTTTTTGAGTTTT-GTTTTAACTTTTCAAAGC
*
11743309 TTTTTTTGACTTTT
1 TTTTTTTGAGTTTT
11743323 CAAAAGCCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
32 23 0.62
33 14 0.38
ACGTcount: A:0.13, C:0.08, G:0.14, T:0.65
Consensus pattern (32 bp):
TTTTTTTGAGTTTTGTTTTAACTTTTCAAAGC
Found at i:11744457 original size:7 final size:6
Alignment explanation
Indices: 11744424--11744462 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
11744414 ACCAAACAAT
* * *
11744424 AAAATA AAAGTA AAAGTA AAAATA AAAATG AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
11744463 GCAGTGGGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:11744754 original size:35 final size:35
Alignment explanation
Indices: 11744697--11744786 Score: 107
Period size: 34 Copynumber: 2.6 Consensus size: 35
11744687 TTTGAATAGA
11744697 CATGAGT-TGAAAAATAAA-ATGATCAAAATTGAAC
1 CATGAGTCTG-AAAATAAAGATGATCAAAATTGAAC
* *
11744731 CATGAGTCTGAAAATAAAGATGATTAAGATTGAAC
1 CATGAGTCTGAAAATAAAGATGATCAAAATTGAAC
*
11744766 CATAAGTC--AAGAATAAAGATG
1 CATGAGTCTGAA-AATAAAGATG
11744787 CTTGGGACTG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 2 0.04
34 25 0.50
35 23 0.46
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (35 bp):
CATGAGTCTGAAAATAAAGATGATCAAAATTGAAC
Found at i:11745175 original size:22 final size:22
Alignment explanation
Indices: 11745136--11745177 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
11745126 TAGGCTTTTG
* *
11745136 TGCCAACTAATCTAGGCTTACA
1 TGCCAACAAAACTAGGCTTACA
*
11745158 TGCCAACAAAACTGGGCTTA
1 TGCCAACAAAACTAGGCTTA
11745178 AATTTAGGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (22 bp):
TGCCAACAAAACTAGGCTTACA
Found at i:11745363 original size:64 final size:64
Alignment explanation
Indices: 11745249--11745379 Score: 158
Period size: 64 Copynumber: 2.0 Consensus size: 64
11745239 AACTTCATTC
* * * *
11745249 GTGCTAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGTTTGGGTTTAAAATCTTTTT-ATGGT
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGTCTAGGCTTAAAAT-TTTTTCATGGT
* * * *
11745313 GTGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAG-CTAGGCTTAAAATTTTTTCATGGT
1 GTGCCAGATAAACAAGGCTTAAATTTGGGT-CCAACTAAGTCTAGGCTTAAAATTTTTTCATGGT
11745377 GTG
1 GTG
11745380 ATTGATAATC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
63 5 0.09
64 45 0.79
65 7 0.12
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (64 bp):
GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGTCTAGGCTTAAAATTTTTTCATGGT
Found at i:11745387 original size:64 final size:65
Alignment explanation
Indices: 11745263--11745400 Score: 158
Period size: 64 Copynumber: 2.2 Consensus size: 65
11745253 TAGATAAACA
* * * *
11745263 AGGCTTAAATTTGGGTCCAACTAAGTTTGGGTTTAAAATCTTTTTATGGTGTGCCAGATAATC-T
1 AGGCTTAAATTTGGGTCCAACTAAGTCTAGGCTTAAAATCTTTTTATGGTGTGACAGATAATCTT
* * **
11745327 AGGCTTAAATTTGGGTGCTAGCTAAG-CTAGGCTTAAAAT-TTTTTCATGGTGTGATTGATAATC
1 AGGCTTAAATTTGGGT-CCAACTAAGTCTAGGCTTAAAATCTTTTT-ATGGTGTGACAGATAATC
11745390 TT
64 TT
11745392 A-GCTTAAAT
1 AGGCTTAAAT
11745401 ATTTCTTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
63 5 0.08
64 49 0.78
65 9 0.14
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.39
Consensus pattern (65 bp):
AGGCTTAAATTTGGGTCCAACTAAGTCTAGGCTTAAAATCTTTTTATGGTGTGACAGATAATCTT
Found at i:11745430 original size:161 final size:161
Alignment explanation
Indices: 11745249--11745597 Score: 635
Period size: 161 Copynumber: 2.2 Consensus size: 161
11745239 AACTTCATTC
* *
11745249 GTGCTAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGTTTGGGTTTAAAATCTTTTTATGGTG
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTGGGTTTAAAATCTTTTTATGGTG
* *
11745314 TGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAATTTTTTCATGGTGT
66 TGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAAGTTTTTCATAGTGT
11745379 GATTGATAATCTTAGCTTAAATATTTCTTTG
131 GATTGATAATCTTAGCTTAAATATTTCTTTG
11745410 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTGGGTTTAAAATCTTTTTATGGTG
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTGGGTTTAAAATCTTTTTATGGTG
11745475 TGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAAGTTTTTCATAGTGT
66 TGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAAGTTTTTCATAGTGT
11745540 GATTGATAATCTTAGCTTAAATATTTCTTTG
131 GATTGATAATCTTAGCTTAAATATTTCTTTG
* *
11745571 GTGCCAGTTAAACTAGGCTTAAGATTT
1 GTGCCAGATAAACAAGGCTTAA-ATTT
11745598 TGTGTAGACT
Statistics
Matches: 181, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
161 177 0.98
162 4 0.02
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (161 bp):
GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTGGGTTTAAAATCTTTTTATGGTG
TGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAAGTTTTTCATAGTGT
GATTGATAATCTTAGCTTAAATATTTCTTTG
Found at i:11745484 original size:97 final size:97
Alignment explanation
Indices: 11745313--11745497 Score: 241
Period size: 97 Copynumber: 1.9 Consensus size: 97
11745303 TTTTTATGGT
* * * *
11745313 GTGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGCTAGGCTTAAAATTTTTTCATGGTG
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTGCCAACTAAGCTAGGCTTAAAATTTTTTCATGGTG
**
11745378 TGATTGATAATCTTA-GCTTAAATATTTCTTTG
66 TGACAGATAATC-TAGGCTTAAATATTTCTTTG
* *
11745410 GTGCCAGATAAACAAGGCTTAAATTTGGGT-CCAACTAAGCTTGGGTTTAAAATCTTTTT-ATGG
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTGCCAACTAAGC-TAGGCTTAAAAT-TTTTTCATGG
*
11745473 TGTGCCAGATAATCTAGGCTTAAAT
64 TGTGACAGATAATCTAGGCTTAAAT
11745498 TTGGGTGCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
96 10 0.13
97 61 0.80
98 5 0.07
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.37
Consensus pattern (97 bp):
GTGCCAGATAAACAAGGCTTAAATTTGGGTGCCAACTAAGCTAGGCTTAAAATTTTTTCATGGTG
TGACAGATAATCTAGGCTTAAATATTTCTTTG
Found at i:11745540 original size:64 final size:64
Alignment explanation
Indices: 11745410--11745540 Score: 158
Period size: 64 Copynumber: 2.0 Consensus size: 64
11745400 TATTTCTTTG
* * * *
11745410 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTGGGTTTAAAATCTTTTTATGGT
1 GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTAGGCTTAAAATCTTTTCATAGT
* * * *
11745474 GTGCCAGATAATCTAGGCTTAAATTTGGGTGCTAGCTAAGC-TAGGCTTAAAAGT-TTTTCATAG
1 GTGCCAGATAAACAAGGCTTAAATTTGGGT-CCAACTAAGCTTAGGCTTAAAA-TCTTTTCATAG
11745537 T
64 T
11745538 GTG
1 GTG
11745541 ATTGATAATC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
64 48 0.84
65 9 0.16
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (64 bp):
GTGCCAGATAAACAAGGCTTAAATTTGGGTCCAACTAAGCTTAGGCTTAAAATCTTTTCATAGT
Found at i:11745786 original size:22 final size:22
Alignment explanation
Indices: 11745761--11745823 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
11745751 AACTAATTTG
*
11745761 GGCTTATGTGCTAGTTAA-ATTA
1 GGCTTATGTGCTAGCTAATA-TA
* *
11745783 GGCTTATATGCCAGCTAATATA
1 GGCTTATGTGCTAGCTAATATA
*
11745805 GGTTTATGTGCTAGCTAAT
1 GGCTTATGTGCTAGCTAAT
11745824 CTTGACTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (22 bp):
GGCTTATGTGCTAGCTAATATA
Found at i:11746891 original size:25 final size:25
Alignment explanation
Indices: 11746863--11746924 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
11746853 TTCTTATCTT
* *
11746863 TTTCCTTCTTTTATTCTTCTTTTCC
1 TTTCATTCTTTTATTCATCTTTTCC
* * *
11746888 TTTCATTTTTTTTTTCATCTTTTCT
1 TTTCATTCTTTTATTCATCTTTTCC
11746913 TTTGCATTCTTT
1 TTT-CATTCTTT
11746925 CACTGAGTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 23 0.77
26 7 0.23
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTCATTCTTTTATTCATCTTTTCC
Found at i:11746923 original size:15 final size:14
Alignment explanation
Indices: 11746879--11746924 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 14
11746869 TCTTTTATTC
*
11746879 TTCTTTTCCTTTCA
1 TTCTTTTCTTTTCA
11746893 TT-TTTT-TTTTCA
1 TTCTTTTCTTTTCA
11746905 -TCTTTTCTTTTGCA
1 TTCTTTTCTTTT-CA
11746919 TTCTTT
1 TTCTTT
11746925 CACTGAGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
11 1 0.04
12 9 0.33
13 8 0.30
14 4 0.15
15 5 0.19
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.72
Consensus pattern (14 bp):
TTCTTTTCTTTTCA
Found at i:11747397 original size:14 final size:15
Alignment explanation
Indices: 11747373--11747416 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
11747363 CATAACCATT
11747373 TTTCTTTTCTTTTTA
1 TTTCTTTTCTTTTTA
*
11747388 TTTC-TTTCTTTTTC
1 TTTCTTTTCTTTTTA
*
11747402 TCTCTTTTTCTTTTT
1 TTTC-TTTTCTTTTT
11747417 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.48
15 4 0.16
16 9 0.36
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTCTTTTCTTTTTA
Found at i:11747441 original size:10 final size:10
Alignment explanation
Indices: 11747371--11747441 Score: 70
Period size: 10 Copynumber: 6.9 Consensus size: 10
11747361 GTCATAACCA
11747371 TTTTTCTTTTC
1 TTTTT-TTTTC
*
11747382 TTTTTATTTC
1 TTTTTTTTTC
*
11747392 TTTCTTTTTC
1 TTTTTTTTTC
* *
11747402 TCTCTTTTTC
1 TTTTTTTTTC
*
11747412 TTTTTTTTTAA
1 TTTTTTTTT-C
*
11747423 TTTTGTTTTC
1 TTTTTTTTTC
11747433 TTTTTTTTT
1 TTTTTTTTT
11747442 TACTTACCCC
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
10 36 0.73
11 13 0.27
ACGTcount: A:0.04, C:0.13, G:0.01, T:0.82
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:11748173 original size:22 final size:21
Alignment explanation
Indices: 11748148--11748193 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
11748138 AAAAGACCTA
11748148 ATCGATCCCTTAAATTGAGGTG
1 ATCGATCCCTTAAATTGA-GTG
** *
11748170 ATCGATCTTTTAGATTGAGTG
1 ATCGATCCCTTAAATTGAGTG
11748191 ATC
1 ATC
11748194 TATCTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (21 bp):
ATCGATCCCTTAAATTGAGTG
Found at i:11748202 original size:22 final size:22
Alignment explanation
Indices: 11748161--11748201 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11748151 GATCCCTTAA
11748161 ATTGAGGTGATCGATCTTTTAG
1 ATTGAGGTGATCGATCTTTTAG
*
11748183 ATTGA-GTGATCTATCTTTT
1 ATTGAGGTGATCGATCTTTT
11748202 TTAGCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.46
Consensus pattern (22 bp):
ATTGAGGTGATCGATCTTTTAG
Found at i:11761108 original size:16 final size:19
Alignment explanation
Indices: 11761066--11761108 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
11761056 TTTTCATTTC
11761066 TTATTGTGATATTTTGCTA
1 TTATTGTGATATTTTGCTA
11761085 TCTATTGTG-T-TTTT-CTA
1 T-TATTGTGATATTTTGCTA
11761102 TTATTGT
1 TTATTGT
11761109 TATTTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.26
17 4 0.17
18 4 0.17
19 2 0.09
20 7 0.30
ACGTcount: A:0.16, C:0.07, G:0.14, T:0.63
Consensus pattern (19 bp):
TTATTGTGATATTTTGCTA
Found at i:11761114 original size:16 final size:19
Alignment explanation
Indices: 11761067--11761114 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
11761057 TTTCATTTCT
11761067 TATTGTGATATTTTGCTATC
1 TATTGTG-TATTTTGCTATC
11761087 TATTGTGT-TTTT-CTAT-
1 TATTGTGTATTTTGCTATC
11761103 TATTGT-TATTTT
1 TATTGTGTATTTT
11761115 TCTTTAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 1 0.04
16 10 0.37
17 4 0.15
18 4 0.15
19 1 0.04
20 7 0.26
ACGTcount: A:0.17, C:0.06, G:0.12, T:0.65
Consensus pattern (19 bp):
TATTGTGTATTTTGCTATC
Found at i:11761114 original size:17 final size:17
Alignment explanation
Indices: 11761075--11761117 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
11761065 CTTATTGTGA
*
11761075 TATTTTGCTATCTATTG
1 TATTTTTCTATCTATTG
*
11761092 TGTTTTTCTAT-TATTG
1 TATTTTTCTATCTATTG
11761108 TTATTTTTCT
1 -TATTTTTCT
11761118 TTAATGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67
Consensus pattern (17 bp):
TATTTTTCTATCTATTG
Found at i:11763280 original size:29 final size:29
Alignment explanation
Indices: 11763248--11763305 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
11763238 CTTTCCTTTC
11763248 ATTTCCTTTACTAATGTTTATCCAAACAT
1 ATTTCCTTTACTAATGTTTATCCAAACAT
*
11763277 ATTTCTTTTACTAATGTTTATCCAAACAT
1 ATTTCCTTTACTAATGTTTATCCAAACAT
11763306 TGCGTAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (29 bp):
ATTTCCTTTACTAATGTTTATCCAAACAT
Found at i:11768015 original size:24 final size:24
Alignment explanation
Indices: 11767982--11768027 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
11767972 TTTTTTTCAA
* *
11767982 AAATGGTCCTGTTTGTCTAGTCAT
1 AAATGATCCTGTTTGTCAAGTCAT
11768006 AAATGATCCTGTTTGTCAAGTC
1 AAATGATCCTGTTTGTCAAGTC
11768028 TTTCATCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
AAATGATCCTGTTTGTCAAGTCAT
Found at i:11769864 original size:2 final size:2
Alignment explanation
Indices: 11769857--11769883 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11769847 ACTAAAATCT
11769857 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11769884 GTAATAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11772685 original size:1 final size:1
Alignment explanation
Indices: 11772679--11772709 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
11772669 CAGCATTCTT
11772679 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11772710 GGTAGTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:11774601 original size:21 final size:21
Alignment explanation
Indices: 11774567--11774666 Score: 83
Period size: 21 Copynumber: 4.7 Consensus size: 21
11774557 AGATTGAGAA
* *
11774567 TTTTCGATAAAATTTTGGTAAC
1 TTTT-GATATAATTTTAGTAAC
* *
11774589 TTTTGACATAATTTTAGTAAT
1 TTTTGATATAATTTTAGTAAC
* * *
11774610 TTTTTATATTATTTTAATAAC
1 TTTTGATATAATTTTAGTAAC
* *
11774631 TTATGATATAATTTTTGTAAC
1 TTTTGATATAATTTTAGTAAC
** *
11774652 CATTAATATAATTTT
1 TTTTGATATAATTTT
11774667 TTCAATATTT
Statistics
Matches: 60, Mismatches: 18, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
21 56 0.93
22 4 0.07
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTTGATATAATTTTAGTAAC
Found at i:11774878 original size:11 final size:11
Alignment explanation
Indices: 11774862--11774938 Score: 57
Period size: 11 Copynumber: 7.0 Consensus size: 11
11774852 ATTAACCTTA
11774862 TATTAAATTAT
1 TATTAAATTAT
* *
11774873 TCTTAATTTAT
1 TATTAAATTAT
*
11774884 TATTAAGTTAT
1 TATTAAATTAT
* *
11774895 CATT-AATTAAC
1 TATTAAATT-AT
*
11774906 TATTAAGTTAT
1 TATTAAATTAT
* * *
11774917 CAATAATTTAT
1 TATTAAATTAT
11774928 TATTAAATTAT
1 TATTAAATTAT
11774939 ACTAATTTAC
Statistics
Matches: 48, Mismatches: 16, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
10 3 0.06
11 42 0.88
12 3 0.06
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (11 bp):
TATTAAATTAT
Found at i:11774887 original size:22 final size:22
Alignment explanation
Indices: 11774862--11774947 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 22
11774852 ATTAACCTTA
11774862 TATTAAATTATTC-TTAATTTAT
1 TATTAAATTA-TCATTAATTTAT
* * *
11774884 TATTAAGTTATCATTAATTAAC
1 TATTAAATTATCATTAATTTAT
* *
11774906 TATTAAGTTATCAATAATTTAT
1 TATTAAATTATCATTAATTTAT
*
11774928 TATTAAATTAT-ACTAATTTA
1 TATTAAATTATCATTAATTTA
11774948 CTCATAAGCT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 10 0.18
22 45 0.82
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (22 bp):
TATTAAATTATCATTAATTTAT
Found at i:11775004 original size:22 final size:22
Alignment explanation
Indices: 11774878--11775039 Score: 84
Period size: 22 Copynumber: 7.4 Consensus size: 22
11774868 ATTATTCTTA
*
11774878 ATTTATTATTAAGTTATC-ATT
1 ATTTACTATTAAGTTATCAATT
* *
11774899 AATTAACTATTAAGTTATCAATA
1 -ATTTACTATTAAGTTATCAATT
* * * *
11774922 ATTTATTATTAAATTAT-ACTA
1 ATTTACTATTAAGTTATCAATT
*
11774943 ATTTACTCA-TAAGCTT-TTAATT
1 ATTTACT-ATTAAG-TTATCAATT
* * * *
11774965 ATTAATTACTAAATTATCAATT
1 ATTTACTATTAAGTTATCAATT
*
11774987 ATTTACTATTAAGGTATC-ATT
1 ATTTACTATTAAGTTATCAATT
* ** *
11775008 GATTTA-TCACTAAGTTATTTATA
1 -ATTTACT-ATTAAGTTATCAATT
11775031 ATTTACTAT
1 ATTTACTAT
11775040 AATTAATTAA
Statistics
Matches: 105, Mismatches: 25, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
21 20 0.19
22 80 0.76
23 5 0.05
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCAATT
Found at i:11775115 original size:22 final size:21
Alignment explanation
Indices: 11775090--11775170 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 21
11775080 TATCGTTAAG
*
11775090 TTATTATTAAGTTATCATTTA
1 TTATTACTAAGTTATCATTTA
* * *
11775111 CTTATTACTAATTTATCAATAA
1 -TTATTACTAAGTTATCATTTA
*
11775133 TTAATAACTAAGTTATCATTT-
1 TT-ATTACTAAGTTATCATTTA
* *
11775154 TTTTTAATAAGTTATCA
1 TTATTACTAAGTTATCA
11775171 CTGATTTATT
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
20 12 0.26
21 4 0.09
22 31 0.66
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.51
Consensus pattern (21 bp):
TTATTACTAAGTTATCATTTA
Found at i:11775284 original size:22 final size:22
Alignment explanation
Indices: 11775254--11775305 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
11775244 ATTACTGGTT
*
11775254 ACTACTAAATTATCAATT-ATTG
1 ACTATTAAATTA-CAATTCATTG
* *
11775276 ACTATTAAATTACTATTCATTT
1 ACTATTAAATTACAATTCATTG
11775298 ACTATTAA
1 ACTATTAA
11775306 GATTCCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.44
Consensus pattern (22 bp):
ACTATTAAATTACAATTCATTG
Found at i:11788226 original size:156 final size:158
Alignment explanation
Indices: 11788018--11788305 Score: 463
Period size: 156 Copynumber: 1.8 Consensus size: 158
11788008 ATTTTAAGTT
*
11788018 TTGAATTACTATAAAAGTAGTTCATCAACAAGCATAATACACAACAAGAATCACAAAACAAAATA
1 TTGAATTACTACAAAAGTAGTTCATCAACAAGCATAATACACAACAAGAATCACAAAACAAAATA
* * * * * *
11788083 GGCAATAGTTTTTAT-TTT-TCATAGTCATTGCATCTCAGGACATATAATACACTATCTAGTTCA
66 GGCAACAATTTTAATCTTTCACAAAGTCATTGCATCTCAAGACATATAATACACTATCTAGTTCA
11788146 ATAAAGAATTTTCAACAAAGTCTTGGCC
131 ATAAAGAATTTTCAACAAAGTCTTGGCC
* *
11788174 TTGAATTACTACAAAAGTAGTTCATCAACAAGCATAATACACAATAAGAATCACAAAATAAAATA
1 TTGAATTACTACAAAAGTAGTTCATCAACAAGCATAATACACAACAAGAATCACAAAACAAAATA
* *
11788239 TGCAACAATTTTAATCTTTCACAAAGTCATTGCATCTCAAGACATGTAATACACTATCTAGTTCA
66 GGCAACAATTTTAATCTTTCACAAAGTCATTGCATCTCAAGACATATAATACACTATCTAGTTCA
11788304 AT
131 AT
11788306 GAAGTAAGGC
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
156 73 0.61
157 3 0.03
158 43 0.36
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (158 bp):
TTGAATTACTACAAAAGTAGTTCATCAACAAGCATAATACACAACAAGAATCACAAAACAAAATA
GGCAACAATTTTAATCTTTCACAAAGTCATTGCATCTCAAGACATATAATACACTATCTAGTTCA
ATAAAGAATTTTCAACAAAGTCTTGGCC
Found at i:11802696 original size:8 final size:8
Alignment explanation
Indices: 11802683--11802708 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
11802673 TCACTCTCTT
11802683 ATGCACCC
1 ATGCACCC
11802691 ATGCACCC
1 ATGCACCC
11802699 ATGCACCC
1 ATGCACCC
11802707 AT
1 AT
11802709 ACATTTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (8 bp):
ATGCACCC
Found at i:11815578 original size:18 final size:18
Alignment explanation
Indices: 11815555--11815595 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
11815545 TTAATACATG
*
11815555 TTTTATTTTTTAATTACA
1 TTTTATTTTTTAAATACA
*
11815573 TTTTATTTTTTAAATATA
1 TTTTATTTTTTAAATACA
11815591 TTTTA
1 TTTTA
11815596 AAAGTACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATTTTTTAAATACA
Found at i:11816974 original size:30 final size:31
Alignment explanation
Indices: 11816909--11816986 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
11816899 GCTTTTTGCC
* * * *
11816909 TAACAAGTAGTATCAGAGTTGTGGTGATCCT
1 TAACAAGTGGTATCAAAGCTATGGTGATCCT
*
11816940 TAACAAGTGGTATCAAAGCTATTGTGAT-CT
1 TAACAAGTGGTATCAAAGCTATGGTGATCCT
* *
11816970 TAACAAATGATATCAAA
1 TAACAAGTGGTATCAAA
11816987 ACTGAAGGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 17 0.43
31 23 0.57
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (31 bp):
TAACAAGTGGTATCAAAGCTATGGTGATCCT
Found at i:11818919 original size:9 final size:9
Alignment explanation
Indices: 11818905--11818942 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
11818895 GCCTCCACCG
11818905 AAAGATGGC
1 AAAGATGGC
11818914 AAAGATGG-
1 AAAGATGGC
*
11818922 AAAGGAAGGC
1 AAA-GATGGC
11818932 AAAGATGGC
1 AAAGATGGC
11818941 AA
1 AA
11818943 GAAAGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 3 0.12
9 19 0.76
10 3 0.12
ACGTcount: A:0.50, C:0.08, G:0.34, T:0.08
Consensus pattern (9 bp):
AAAGATGGC
Found at i:11822289 original size:2 final size:2
Alignment explanation
Indices: 11822282--11822309 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11822272 GTCTTTTATT
11822282 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11822310 ATTCCCTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11826623 original size:27 final size:25
Alignment explanation
Indices: 11826548--11826622 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 25
11826538 AAATATATAT
* *
11826548 TAATATATTTTTTTTCAATAAAAATA
1 TAATTTATTTTATTT-AATAAAAATA
* *
11826574 T-ATTTATTTTAATTAATCTAAAATAA
1 TAATTTATTTTATTTAAT-AAAAAT-A
11826600 TAATTTATTTTATTTAATAAAAA
1 TAATTTATTTTATTTAATAAAAA
11826623 ACTTTATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
24 3 0.08
25 15 0.38
26 7 0.17
27 15 0.38
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (25 bp):
TAATTTATTTTATTTAATAAAAATA
Found at i:11826873 original size:23 final size:22
Alignment explanation
Indices: 11826846--11826892 Score: 85
Period size: 23 Copynumber: 2.1 Consensus size: 22
11826836 ATTATCACTT
11826846 TAACATATTTATATTATGAGCTC
1 TAACATATTTATATTATGAG-TC
11826869 TAACATATTTATATTATGAGTC
1 TAACATATTTATATTATGAGTC
11826891 TA
1 TA
11826893 TTAAGAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.45
Consensus pattern (22 bp):
TAACATATTTATATTATGAGTC
Found at i:11827621 original size:21 final size:21
Alignment explanation
Indices: 11827574--11827613 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
11827564 TAACAAATCC
*
11827574 TCAAAATCTTTCAATATAAAA
1 TCAAAATCTCTCAATATAAAA
11827595 TCAAAATCTCTCAATATAA
1 TCAAAATCTCTCAATATAA
11827614 GATTAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (21 bp):
TCAAAATCTCTCAATATAAAA
Found at i:11830840 original size:16 final size:16
Alignment explanation
Indices: 11830802--11830840 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
11830792 AAATGCTTAT
* *
11830802 AAAAAAGTTGTAAAAG
1 AAAAAAATTGTAAAAA
*
11830818 AAAAAAATTTTAAAAA
1 AAAAAAATTGTAAAAA
11830834 AAAAAAA
1 AAAAAAA
11830841 AGAAATATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAAAATTGTAAAAA
Found at i:11831187 original size:23 final size:23
Alignment explanation
Indices: 11831140--11831197 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
11831130 TATTTCATAC
*
11831140 AAATTTTTTAAAAAATCTGTAAA
1 AAATTTTTTAAAAAATCTGGAAA
* *
11831163 AAATTTTTTAAAAAATTTGGCAA
1 AAATTTTTTAAAAAATCTGGAAA
*
11831186 AAA-TGTTTAAAA
1 AAATTTTTTAAAA
11831198 TTTCAATAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (23 bp):
AAATTTTTTAAAAAATCTGGAAA
Found at i:11832775 original size:63 final size:61
Alignment explanation
Indices: 11832632--11832780 Score: 156
Period size: 63 Copynumber: 2.4 Consensus size: 61
11832622 TAAATAATTA
* * * * *
11832632 TTTTTTAAAGATGATTATTTAAAGTATTTTTTAAATTAAAATGCCTTAAATTATCTTGTTAT
1 TTTTTTAAAGA-GATTATTTAAGGTATTTTTCAAATAAAAATGCATTAAATAATCTTGTTAT
* * *
11832694 TTATTTTAAAAGAAATTATTTAAGGTATTTTTCAACTAAAAATGCATTCAATAATCATAT-TCTA
1 TT-TTTT-AAAGAGATTATTTAAGGTATTTTTCAAATAAAAATGCATTAAATAATC-T-TGT-TA
11832758 T
61 T
*
11832759 TTTTTTAAAGGGATTATTTAAG
1 TTTTTTAAAGAGATTATTTAAG
11832781 CCGTTTTCTA
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
62 2 0.03
63 53 0.74
64 11 0.15
65 6 0.08
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.48
Consensus pattern (61 bp):
TTTTTTAAAGAGATTATTTAAGGTATTTTTCAAATAAAAATGCATTAAATAATCTTGTTAT
Found at i:11832969 original size:64 final size:61
Alignment explanation
Indices: 11832897--11833187 Score: 160
Period size: 63 Copynumber: 4.7 Consensus size: 61
11832887 TTAGAAACCC
*
11832897 CTTAAATAATCTTATTCTATTTTTTTATTAAA-GATTA-TTTAAAGCATTTCT-AGTGAAAAAAT
1 CTTAAATAATCTTATTCTATTTTTTTA--AAAGGATTAGTTT-AAGCATTTCTCAAT--AAAAAT
11832959 G
61 G
* * * *
11832960 TCTTAAATAAT-TATGTTATATTTTTTTAAAAGGGATTAGTTTAGGCATTTTTCAATAAAAATG
1 -CTTAAATAATCT-TATTCTATTTTTTTAAAA-GGATTAGTTTAAGCATTTCTCAATAAAAATG
* * * ***
11833023 CTTTAAATAATCCTATTCTATTTTTTTAAATGAATTA-TTTAAG-ATGTTTCTGGTTGGAAAACA
1 C-TTAAATAATCTTATTCTATTTTTTTAAAAGGATTAGTTTAAGCA--TTTCTCAAT--AAAA-A
11833086 T-
60 TG
* * * *
11833087 CTTAAATAATCATATTATATTTTTTTAAAGGAGATTA-TTTAA--A-TTCT-AATCAGAAATG
1 CTTAAATAATCTTATTCTATTTTTTTAAAAG-GATTAGTTTAAGCATTTCTCAAT-AAAAATG
** *
11833145 CCTTAAATAATCTTATGATA-TTTTTTAAAGGGGATTA-TTTAAG
1 -CTTAAATAATCTTATTCTATTTTTTTAAA-AGGATTAGTTTAAG
11833188 GCATAACGAA
Statistics
Matches: 185, Mismatches: 25, Indels: 39
0.74 0.10 0.16
Matches are distributed among these distances:
57 2 0.01
58 22 0.12
59 20 0.11
60 5 0.03
61 5 0.03
62 14 0.08
63 60 0.32
64 50 0.27
65 7 0.04
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (61 bp):
CTTAAATAATCTTATTCTATTTTTTTAAAAGGATTAGTTTAAGCATTTCTCAATAAAAATG
Found at i:11833166 original size:59 final size:57
Alignment explanation
Indices: 11833087--11833307 Score: 194
Period size: 58 Copynumber: 3.7 Consensus size: 57
11833077 TGGAAAACAT
*
11833087 CTTAAATAATCATATTATATTTTTTTAAAGGAGATTATTTAAATTCTAATCAGAAATGC
1 CTTAAATAATCCTATTATA-TTTTTTAAAGGAGATTATTTAAATTCTAA-CAGAAATGC
* * * ** *
11833146 CTTAAATAATCTTATGATATTTTTTAAAGGGGATTATTT-AAGGCATAACGAAAAATGC
1 CTTAAATAATCCTATTATATTTTTTAAAGGAGATTATTTAAATTC-TAAC-AGAAATGC
** * * *
11833204 CTTAAATAATCCTATTATATTTTTTAAAAAATGATTATTTAAGGTGTTTTCCAACCAGAAACGC
1 CTTAAATAATCCTATTATATTTTTTAAAGGA-GATTATTTAA-----ATTCTAA-CAGAAATGC
* *
11833268 CTTAAATAATCCTATAATATTTTTTGTAAGG-GATTATTTA
1 CTTAAATAATCCTATTATATTTTTT-AAAGGAGATTATTTA
11833308 TGATATTTCT
Statistics
Matches: 130, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
57 4 0.03
58 55 0.42
59 25 0.19
60 1 0.01
63 9 0.07
64 32 0.25
65 4 0.03
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (57 bp):
CTTAAATAATCCTATTATATTTTTTAAAGGAGATTATTTAAATTCTAACAGAAATGC
Found at i:11835021 original size:16 final size:16
Alignment explanation
Indices: 11835000--11835035 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
11834990 TATTAGGGTG
11835000 TATTATTAACTGGTAC
1 TATTATTAACTGGTAC
11835016 TATTATTAACTGGTAC
1 TATTATTAACTGGTAC
11835032 TATT
1 TATT
11835036 GAGTGTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (16 bp):
TATTATTAACTGGTAC
Found at i:11835430 original size:216 final size:216
Alignment explanation
Indices: 11835056--11835489 Score: 618
Period size: 216 Copynumber: 2.0 Consensus size: 216
11835046 ATGCAGTTTT
* * * * * *
11835056 TATATAGAGAGATTAAGGCGAGACAAATGACCCATAGATTTAGATTCGTTAACCCAAATGTGATT
1 TATATAGAGAGATCAAGACAAGACAAATGACACATAGATTCAGATTCGTTAACCCAAATGTAATT
* * * * * * *
11835121 TGTCAAAATAGTGGCATTGTCGTTATTAGTGATTGTCATGTAGGTCAATGCATGCTAAAATGGAC
66 AGTCAAAAGAGTGACATTGTCATTATTAGTGATCGTCATGTAGGTCAATACATGCAAAAATGGAC
* * * *
11835186 TGATTATTTTCTGATGCTTTATAATGTTGTGTAAGTTTTATTCGTACAACTAAAATTCCAACCTT
131 TAATTATTTTCTGATGCCTTATAATGTTGTATAAGATTTATTCGTACAACTAAAATTCCAACCTT
11835251 TATAACATCTAAGATGATGTC
196 TATAACATCTAAGATGATGTC
*
11835272 TATATAGAGAGATCAAGACAAGACAAATGACACATAGATTCAGATTCGTTTACCCAAATGTAATT
1 TATATAGAGAGATCAAGACAAGACAAATGACACATAGATTCAGATTCGTTAACCCAAATGTAATT
* * * *
11835337 AGTCAAGAGAGTGACATTGTCATTATTCA-TGATCGTCATGTGGGTCAGTACATGCAAAAATGGG
66 AGTCAAAAGAGTGACATTGTCATTATT-AGTGATCGTCATGTAGGTCAATACATGCAAAAATGGA
* *
11835401 CTAATTATTTTCTGGTGCCTTATAATGTTGTATAAGATTTATTCGTACAACTAAAATTCCAACTT
130 CTAATTATTTTCTGATGCCTTATAATGTTGTATAAGATTTATTCGTACAACTAAAATTCCAACCT
* *
11835466 TTATGATATCTAAGATGATGTC
195 TTATAACATCTAAGATGATGTC
11835488 TA
1 TA
11835490 ATATTTGTAT
Statistics
Matches: 191, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
216 190 0.99
217 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (216 bp):
TATATAGAGAGATCAAGACAAGACAAATGACACATAGATTCAGATTCGTTAACCCAAATGTAATT
AGTCAAAAGAGTGACATTGTCATTATTAGTGATCGTCATGTAGGTCAATACATGCAAAAATGGAC
TAATTATTTTCTGATGCCTTATAATGTTGTATAAGATTTATTCGTACAACTAAAATTCCAACCTT
TATAACATCTAAGATGATGTC
Found at i:11837772 original size:22 final size:22
Alignment explanation
Indices: 11837720--11837772 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
11837710 AAACATTATG
* *
11837720 AAACAATATCAATATAATAAATA
1 AAACAA-ATCAAGAGAATAAATA
*
11837743 AAAAAAATCAAGAGAATGAAAT-
1 AAACAAATCAAGAGAAT-AAATA
11837765 AAACAAAT
1 AAACAAAT
11837773 ACACATGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.68, C:0.08, G:0.06, T:0.19
Consensus pattern (22 bp):
AAACAAATCAAGAGAATAAATA
Found at i:11838604 original size:37 final size:37
Alignment explanation
Indices: 11838554--11838629 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
11838544 ACACTCTGCC
*
11838554 ATCTGCTGTAGAACCTTTCCATCCCGGTAGAACATAT
1 ATCTGCTGTAGAACCTTTCCATCCCAGTAGAACATAT
* *
11838591 ATCTGCTGTAGAACCTTTTCATCCTAGTAGAACATAT
1 ATCTGCTGTAGAACCTTTCCATCCCAGTAGAACATAT
11838628 AT
1 AT
11838630 GAATTACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (37 bp):
ATCTGCTGTAGAACCTTTCCATCCCAGTAGAACATAT
Found at i:11843762 original size:32 final size:31
Alignment explanation
Indices: 11843661--11843766 Score: 106
Period size: 32 Copynumber: 3.3 Consensus size: 31
11843651 TGAAAAAATC
*
11843661 CATATCATTTTAAAAAATTAAGTAAAAATTTT
1 CATATCATTTT-AAAAATTAAATAAAAATTTT
* * * * **
11843693 TATAATGATTTTCAAAAGTAAATAAAAA-ACT
1 CAT-ATCATTTTAAAAATTAAATAAAAATTTT
11843724 CAATATCATTTTAAAATATTAAATAAAAATTTT
1 C-ATATCATTTTAAAA-ATTAAATAAAAATTTT
11843757 CATATCATTT
1 CATATCATTT
11843767 AAGAAAATCA
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
31 11 0.19
32 37 0.65
33 9 0.16
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.40
Consensus pattern (31 bp):
CATATCATTTTAAAAATTAAATAAAAATTTT
Found at i:11843792 original size:12 final size:12
Alignment explanation
Indices: 11843772--11843830 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
11843762 CATTTAAGAA
11843772 AATCAATTTATT
1 AATCAATTTATT
*
11843784 AATCTATTTA-T
1 AATCAATTTATT
11843795 AA-CAAATTT-TAT
1 AATC-AATTTAT-T
11843807 AGATCAATTTATT
1 A-ATCAATTTATT
*
11843820 AATCTATTTAT
1 AATCAATTTAT
11843831 AACAAATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
10 1 0.03
11 7 0.18
12 20 0.53
13 8 0.21
14 2 0.05
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (12 bp):
AATCAATTTATT
Found at i:11843814 original size:36 final size:36
Alignment explanation
Indices: 11843773--11843847 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
11843763 ATTTAAGAAA
11843773 ATCAATTTATTAATCTATTTATAACAAATTTTATAG
1 ATCAATTTATTAATCTATTTATAACAAATTTTATAG
11843809 ATCAATTTATTAATCTATTTATAACAAATTTTATAG
1 ATCAATTTATTAATCTATTTATAACAAATTTTATAG
11843845 ATC
1 ATC
11843848 TATTCTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (36 bp):
ATCAATTTATTAATCTATTTATAACAAATTTTATAG
Found at i:11843884 original size:26 final size:28
Alignment explanation
Indices: 11843826--11843884 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
11843816 TATTAATCTA
*
11843826 TTTA-TAACAAATTTTATAGATCTATTC
1 TTTATTAACAAATTTTATAGATATATTC
*
11843853 TTTATTAACCAATTTTA-A-ATATATTC
1 TTTATTAACAAATTTTATAGATATATTC
11843879 TTTATT
1 TTTATT
11843885 TAAATTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 13 0.45
27 5 0.17
28 11 0.38
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.53
Consensus pattern (28 bp):
TTTATTAACAAATTTTATAGATATATTC
Done.