Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 67 of 117
Found at i:14486480 original size:7 final size:7
Alignment explanation
Indices: 14486470--14486501 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
14486460 AATAAATACC
14486470 AAAAATT
1 AAAAATT
14486477 AAAAA--
1 AAAAATT
14486482 AAAAATT
1 AAAAATT
14486489 AAAAATT
1 AAAAATT
14486496 AAAAAT
1 AAAAAT
14486502 GAGAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.22
7 18 0.78
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (7 bp):
AAAAATT
Found at i:14503840 original size:64 final size:65
Alignment explanation
Indices: 14503747--14503959 Score: 227
Period size: 64 Copynumber: 3.3 Consensus size: 65
14503737 AATATCCGAT
* * * *
14503747 AAACCCCTTAAATAAT-TTTGGACTATTTTTTATATGAGGATTATTTAAAGCATTTTCCAACGAA
1 AAACGCCTTAAATAATCTCTGGGCTATTTTTTATATGAGGATTATTTAAGGCATTTTCCAACGAA
* * *** * * * *
14503811 AAACACCTTGAATAATCT-TGTTTTATTTTTTATATTATGGATTATTTAAGGTA-TTTCTAATTG
1 AAACGCCTTAAATAATCTCTGGGCTATTTTTTATATGA-GGATTATTTAAGGCATTTTCCAA-CG
14503874 AA
64 AA
* * *
14503876 AAATGCCTTAAATAAT-TCTGGGCTATTTTTTATATGAGGATTATTTAAGGCGTTTTCCAACCAA
1 AAACGCCTTAAATAATCTCTGGGCTATTTTTTATATGAGGATTATTTAAGGCATTTTCCAACGAA
*
14503940 CAACGCCTTAAATAATCTCT
1 AAACGCCTTAAATAATCTCT
14503960 ATTAAAATTT
Statistics
Matches: 119, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
64 65 0.55
65 54 0.45
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (65 bp):
AAACGCCTTAAATAATCTCTGGGCTATTTTTTATATGAGGATTATTTAAGGCATTTTCCAACGAA
Found at i:14504236 original size:62 final size:63
Alignment explanation
Indices: 14504160--14504277 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 63
14504150 TTCCAACCAA
14504160 GATTATTGAAGGCGTTTTCTAACT-AAAAACACCTTAAATAATC-TGTGATATTTTTGAAAAAG
1 GATTATTGAAGGCG-TTTCTAACTGAAAAACACCTTAAATAATCTTGTGATATTTTTGAAAAAG
* * *** * *
14504222 GATTATTTATGGCGTTTCTGGTTGAAAAATACCTTAAATAATCTTGTTATATTTTT
1 GATTATTGAAGGCGTTTCTAACTGAAAAACACCTTAAATAATCTTGTGATATTTTT
14504278 TTAAAGGGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
61 6 0.13
62 30 0.64
63 11 0.23
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (63 bp):
GATTATTGAAGGCGTTTCTAACTGAAAAACACCTTAAATAATCTTGTGATATTTTTGAAAAAG
Found at i:14505673 original size:7 final size:7
Alignment explanation
Indices: 14505661--14505686 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14505651 TTTATTTTCA
14505661 TTATTAT
1 TTATTAT
14505668 TTATTAT
1 TTATTAT
14505675 TTATTAT
1 TTATTAT
14505682 TTATT
1 TTATT
14505687 TATTCTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTAT
Found at i:14506038 original size:21 final size:21
Alignment explanation
Indices: 14506014--14506055 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14506004 AACCAAAACT
14506014 AAAACCAAAACAAAAAACAACA
1 AAAACCAAAA-AAAAAACAACA
* *
14506036 AAAACCCAAAAAAACACAAC
1 AAAACCAAAAAAAAAACAAC
14506056 CCATGGTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.74, C:0.26, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAACCAAAAAAAAAACAACA
Found at i:14506847 original size:10 final size:10
Alignment explanation
Indices: 14506834--14506872 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
14506824 TAAAGAATAA
14506834 TAATAAAAAT
1 TAATAAAAAT
*
14506844 TAATATAAA-
1 TAATAAAAAT
14506853 TAATAAAAAT
1 TAATAAAAAT
*
14506863 TAGTAAAAAT
1 TAATAAAAAT
14506873 GTAAGAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
TAATAAAAAT
Found at i:14506872 original size:19 final size:19
Alignment explanation
Indices: 14506832--14506872 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
14506822 AATAAAGAAT
*
14506832 AATAATAAAAATTAATATA
1 AATAATAAAAATTAATAAA
*
14506851 AATAATAAAAATTAGTAAA
1 AATAATAAAAATTAATAAA
14506870 AAT
1 AAT
14506873 GTAAGAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAATAAAAATTAATAAA
Found at i:14508567 original size:18 final size:19
Alignment explanation
Indices: 14508544--14508580 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
14508534 AAGAATACAA
14508544 AACAAAAT-AAAACAAAAC
1 AACAAAATAAAAACAAAAC
14508562 AACAAAATGAAAAACAAAA
1 AACAAAAT-AAAAACAAAA
14508581 AAATCTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.78, C:0.14, G:0.03, T:0.05
Consensus pattern (19 bp):
AACAAAATAAAAACAAAAC
Found at i:14511598 original size:18 final size:17
Alignment explanation
Indices: 14511548--14511603 Score: 62
Period size: 16 Copynumber: 3.3 Consensus size: 17
14511538 CAAATGATCC
*
14511548 AAAAAAGAGAAAGTGA-
1 AAAAAAAAGAAAGTGAT
*
14511564 AAAAAATAA-AAAATGAT
1 AAAAAA-AAGAAAGTGAT
14511581 AAAAAAAAGAAAGGTGAT
1 AAAAAAAAGAAA-GTGAT
14511599 AAAAA
1 AAAAA
14511604 CAAAATTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 14 0.42
17 10 0.30
18 9 0.27
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (17 bp):
AAAAAAAAGAAAGTGAT
Found at i:14511603 original size:34 final size:34
Alignment explanation
Indices: 14511539--14511608 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
14511529 CTAGATATTC
* *
14511539 AAATGATCCAAAAAAGAGAAAGTGAAAAAAATAAA
1 AAATGAT-CAAAAAAAAGAAAGTGAAAAAAACAAA
*
14511574 AAATGAT-AAAAAAAAGAAAGGTGATAAAAACAAA
1 AAATGATCAAAAAAAAGAAA-GTGAAAAAAACAAA
14511608 A
1 A
14511609 TTTTAGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 11 0.35
34 13 0.42
35 7 0.23
ACGTcount: A:0.70, C:0.04, G:0.14, T:0.11
Consensus pattern (34 bp):
AAATGATCAAAAAAAAGAAAGTGAAAAAAACAAA
Found at i:14513327 original size:24 final size:25
Alignment explanation
Indices: 14513295--14513418 Score: 146
Period size: 24 Copynumber: 4.9 Consensus size: 25
14513285 TTTCATGTGC
14513295 ATCATTTTAAGAAAAGACATTTG-T
1 ATCATTTTAAGAAAAGACATTTGCT
*
14513319 ATCATTTT-AGAAAAAGAAATTTGCCTT
1 ATCATTTTAAG-AAAAGACATTTG-C-T
14513346 ATCATTTTAAGAAAAGACATTTG-T
1 ATCATTTTAAGAAAAGACATTTGCT
* *
14513370 ATCATTTTAAAAAAAGATATTTGCATT
1 ATCATTTTAAGAAAAGACATTTGC--T
*
14513397 ATCATTTTAAGAGAAGACATTT
1 ATCATTTTAAGAAAAGACATTT
14513419 TCATCATAGT
Statistics
Matches: 85, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
23 2 0.02
24 41 0.48
27 40 0.47
28 2 0.02
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (25 bp):
ATCATTTTAAGAAAAGACATTTGCT
Found at i:14513425 original size:51 final size:51
Alignment explanation
Indices: 14513295--14513418 Score: 212
Period size: 51 Copynumber: 2.4 Consensus size: 51
14513285 TTTCATGTGC
* *
14513295 ATCATTTTAAGAAAAGACATTTGTATCATTTTAGAAAAAGAAATTTGCCTT
1 ATCATTTTAAGAAAAGACATTTGTATCATTTTAAAAAAAGAAATTTGCATT
*
14513346 ATCATTTTAAGAAAAGACATTTGTATCATTTTAAAAAAAGATATTTGCATT
1 ATCATTTTAAGAAAAGACATTTGTATCATTTTAAAAAAAGAAATTTGCATT
*
14513397 ATCATTTTAAGAGAAGACATTT
1 ATCATTTTAAGAAAAGACATTT
14513419 TCATCATAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (51 bp):
ATCATTTTAAGAAAAGACATTTGTATCATTTTAAAAAAAGAAATTTGCATT
Found at i:14513861 original size:137 final size:133
Alignment explanation
Indices: 14513664--14514051 Score: 479
Period size: 134 Copynumber: 2.8 Consensus size: 133
14513654 ATTACATTTT
* * * * *
14513664 CTCGATGGTGATATCTGAGTTTAAAGTTTGAATTTGCATTATATTTCTACATTTTCATTTTCTCA
1 CTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTCTTTTTCTACATTTACATTTTCT--
* * * *
14513729 ATGGTGACATCCGAGTAATAAAATATGAATTTCATTTTCTTGATGGTGATATTCAAGATATTTTC
64 -TGGTGATATCCGAGTATTAAAATATGAATTTCATTTT-TTGGTGGTGATATTCAAAATATTTTC
14513794 AAAATCA
127 AAAATCA
* * * **
14513801 CTCGGTGGTGATATCCAAGATTAAAGTTTGAATTTGCATTCTTTTTCTACACTTGGATTTTCTTG
1 CTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTCTTTTTCTACATTTACATTTTCTTG
* * **
14513866 ATGATATCCGAGTATTAAAATATGAATTTCAATTTTTTGGTAGAAATATTCAAAATATTTTCAAA
66 GTGATATCCGAGTATTAAAATATGAATTTC-ATTTTTTGGTGGTGATATTCAAAATATTTTCAAA
14513931 ATCA
130 ATCA
* * *
14513935 CTCGGTGGTGATATCCGAGTTTAAAATTTGAATTTGCATTCTTTCTCTACATTTATATTTTCTTG
1 CTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTCTTTTTCTACATTTACATTTTCTT-
* * *
14514000 GTAGTGATATCCAAGTATTAAAGTATAAATTTCATTTTTTTGGTGGTGATAT
65 G--GTGATATCCGAGTATTAAAATATGAATTTCA-TTTTTTGGTGGTGATAT
14514052 CCGAGTATTA
Statistics
Matches: 215, Mismatches: 31, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
134 114 0.53
135 6 0.03
136 1 0.00
137 94 0.44
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (133 bp):
CTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTCTTTTTCTACATTTACATTTTCTTG
GTGATATCCGAGTATTAAAATATGAATTTCATTTTTTGGTGGTGATATTCAAAATATTTTCAAAA
TCA
Found at i:14514050 original size:42 final size:42
Alignment explanation
Indices: 14513991--14514092 Score: 159
Period size: 42 Copynumber: 2.4 Consensus size: 42
14513981 CTACATTTAT
* *
14513991 ATTTTCTTGGTAGTGATATCCAAGTATTAAAGTATAAATTTC
1 ATTTTTTTGGTGGTGATATCCAAGTATTAAAGTATAAATTTC
* *
14514033 ATTTTTTTGGTGGTGATATCCGAGTATTAAAGTATGAATTTC
1 ATTTTTTTGGTGGTGATATCCAAGTATTAAAGTATAAATTTC
*
14514075 ATTTTTTTGATGGTGATA
1 ATTTTTTTGGTGGTGATA
14514093 CTCAAGACAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (42 bp):
ATTTTTTTGGTGGTGATATCCAAGTATTAAAGTATAAATTTC
Found at i:14514167 original size:179 final size:179
Alignment explanation
Indices: 14513867--14514230 Score: 521
Period size: 179 Copynumber: 2.0 Consensus size: 179
14513857 ATTTTCTTGA
* * *
14513867 TGATATCCGAGTATTAAAATATGAATTTCAATTTTTTGGTAGAAATATTCAAAATATTTTCAAAA
1 TGATATCCGAGTATTAAAATATGAATTTCAATTTTTTGATAGAAATACTCAAAACATTTTCAAAA
* *
14513932 TCACTCGGTGGTGATATCCGAGTTTAAAATTTGAATTTGCATTCTTTCTCTACATTTATATTTTC
66 TCACTCGATGGTGATATCCGAGTTTAAAATTTGAATTTACATTCTTTCTCTACATTTATATTTTC
* * *
14513997 TTGGTAGTGATATCCAAGTATTAAAGTATAAATTTCATTTTTTTGGTGG
131 TCGGTAGTGATATCCAAGTATTAAAGTATAAATTTCATTTTCTTGATGG
* * * ** *
14514046 TGATATCCGAGTATTAAAGTATGAATTTCATTTTTTTGATGGTGATACTCAAGACATTTTCAAAA
1 TGATATCCGAGTATTAAAATATGAATTTCAATTTTTTGATAGAAATACTCAAAACATTTTCAAAA
** * * * *
14514111 TCACTCGATGGTGATATTTGAGTTTAAAGTTTGAATTTATATTCTTTCTTTACATTTGTATTTTC
66 TCACTCGATGGTGATATCCGAGTTTAAAATTTGAATTTACATTCTTTCTCTACATTTATATTTTC
* * *
14514176 TCGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGG
131 TCGGTAGTGATATCCAAGTATTAAAGTATAAATTTCATTTTCTTGATGG
14514225 TGATAT
1 TGATAT
14514231 TCAAGATATT
Statistics
Matches: 162, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
179 162 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.44
Consensus pattern (179 bp):
TGATATCCGAGTATTAAAATATGAATTTCAATTTTTTGATAGAAATACTCAAAACATTTTCAAAA
TCACTCGATGGTGATATCCGAGTTTAAAATTTGAATTTACATTCTTTCTCTACATTTATATTTTC
TCGGTAGTGATATCCAAGTATTAAAGTATAAATTTCATTTTCTTGATGG
Found at i:14514211 original size:137 final size:137
Alignment explanation
Indices: 14514041--14514293 Score: 425
Period size: 137 Copynumber: 1.8 Consensus size: 137
14514031 TCATTTTTTT
*
14514041 GGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTTTTGATGGTGATACTCAAGACATTTT
1 GGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATACTCAAGACATTTT
* * * *
14514106 CAAAATCACTCGATGGTGATATTTGAGTTTAAAGTTTGAATTTATATTCTTTCTTTACATTTGTA
66 CAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTTTCTTTACATTTGTA
14514171 TTTTCTC
131 TTTTCTC
* *
14514178 GGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATATTCAAGATATTTT
1 GGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATACTCAAGACATTTT
* *
14514243 TAAAATTACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTT
66 CAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTT
14514294 CCACTATATT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 107 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.44
Consensus pattern (137 bp):
GGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATACTCAAGACATTTT
CAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTTTCTTTACATTTGTA
TTTTCTC
Found at i:14514311 original size:137 final size:136
Alignment explanation
Indices: 14514028--14514330 Score: 417
Period size: 137 Copynumber: 2.2 Consensus size: 136
14514018 TAAAGTATAA
* * *
14514028 ATTTCATTTTTTTGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTTTTGATGGTGATA
1 ATTTCATTTTCTCGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATA
* * * * *
14514093 CTCAAGACATTTTCAAAATCACTCGATGGTGATATTTGAGTTTAAAGTTTGAATTTATATTCTTT
66 CTCAAGACATTTTCAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTTC
**
14514158 CTTTAC
131 CACTAC
*
14514164 ATTTGTATTTTCTCGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGAT
1 ATTT-CATTTTCTCGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGAT
* * * *
14514229 ATTCAAGATATTTTTAAAATTACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTT
65 ACTCAAGACATTTTCAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTT
*
14514294 CCACTAT
130 CCACTAC
14514301 ATTTACATTTTCTCGATGGTGGTGATATCC
1 ATTT-CATTTTCTC---GGTGGTGATATCC
14514331 AAAGTCATTT
Statistics
Matches: 145, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
136 4 0.03
137 128 0.88
140 13 0.09
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (136 bp):
ATTTCATTTTCTCGGTGGTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGATGGTGATA
CTCAAGACATTTTCAAAATCACTCAATGGTGATATATGAGTTTAAAGTTTAAATTTACATTCTTC
CACTAC
Found at i:14514356 original size:33 final size:33
Alignment explanation
Indices: 14514319--14514395 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
14514309 TTTCTCGATG
* *
14514319 GTGGTGATATCCAAAGTCATTTGCATCTTTTTA
1 GTGGTGATATCCAAAGTCATTTGCATATTTTCA
* *
14514352 GTGGTGATATCCGAAGTCATTTGCATATTTTCG
1 GTGGTGATATCCAAAGTCATTTGCATATTTTCA
14514385 GTGGTGATATC
1 GTGGTGATATC
14514396 TGAGTGTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.40
Consensus pattern (33 bp):
GTGGTGATATCCAAAGTCATTTGCATATTTTCA
Found at i:14514534 original size:99 final size:99
Alignment explanation
Indices: 14514358--14514574 Score: 283
Period size: 99 Copynumber: 2.2 Consensus size: 99
14514348 TTTAGTGGTG
* * *
14514358 ATATCCGAAGTCATTTGCATATTTTCGGTGGTGATATCTGAGTGTTAAAGCTTGAATTATATTTT
1 ATATCCAAAGTCATTTGCATATTTTCGATGGTGATATCCGAGTGTTAAAGCTTGAATTATATTTT
** *
14514423 TTCGATGCTGATATTTAAGTTTTCTTCGGTGACA
66 CCCGATGCTGATATTTAAGTTTCCTTCGGTGACA
* * * *
14514457 ATATCCAAAGTTATTTGTATCTTTTCGATGGTGATATCCGAGTGTTAAAGCTTGAATTGTATTTT
1 ATATCCAAAGTCATTTGCATATTTTCGATGGTGATATCCGAGTGTTAAAGCTTGAATTATATTTT
* * * * *
14514522 CCCGATGGTGATATTTGAGTTTCCTTCTGTGGCG
66 CCCGATGCTGATATTTAAGTTTCCTTCGGTGACA
*
14514556 ATATCC-AAGTCATTCGCAT
1 ATATCCAAAGTCATTTGCAT
14514575 CATCTCAATA
Statistics
Matches: 100, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
98 10 0.10
99 90 0.90
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (99 bp):
ATATCCAAAGTCATTTGCATATTTTCGATGGTGATATCCGAGTGTTAAAGCTTGAATTATATTTT
CCCGATGCTGATATTTAAGTTTCCTTCGGTGACA
Found at i:14514691 original size:131 final size:131
Alignment explanation
Indices: 14514457--14514694 Score: 334
Period size: 131 Copynumber: 1.8 Consensus size: 131
14514447 TTCGGTGACA
* * * * *
14514457 ATATCCAAAGTTATTTGTATCTTTTCGATGGTGATATCCGAGTGTTAAAGCTTGAATTGTATTTT
1 ATATCCAAAGTCATTTGCATATTTTCGATGGTGATATCCAAGTGTTAAAGCTTGAATTATATTTT
* * *
14514522 CCCGATGGTGATATTTGAGTTTCCTTCTGTGGCGATATCCAAGTCATTCGCATCATCTCAATAGT
66 CCCGATGGTAATATTCGAGTTTCCTTCGGTGGCGATATCCAAGTCATTCGCATCATCTCAATAGT
14514587 G
131 G
* *
14514588 ATATCCAAAGTCATTTGCATATTCTT-GGTGGTGATATCTAAGTGTTAAAGCTTGAATTATATTT
1 ATATCCAAAGTCATTTGCATATT-TTCGATGGTGATATCCAAGTGTTAAAGCTTGAATTATATTT
** * *
14514652 TTTCGATGGTAATATTCGAGTTTCTTTCGGTGGTGATATCCAA
65 TCCCGATGGTAATATTCGAGTTTCCTTCGGTGGCGATATCCAA
14514695 AGTTATTTGT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
131 90 0.98
132 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (131 bp):
ATATCCAAAGTCATTTGCATATTTTCGATGGTGATATCCAAGTGTTAAAGCTTGAATTATATTTT
CCCGATGGTAATATTCGAGTTTCCTTCGGTGGCGATATCCAAGTCATTCGCATCATCTCAATAGT
G
Found at i:14514773 original size:99 final size:99
Alignment explanation
Indices: 14514585--14514810 Score: 247
Period size: 99 Copynumber: 2.3 Consensus size: 99
14514575 CATCTCAATA
* * * *
14514585 GTGATATCCAAAGTCATTTGCATATTCTTGGTGGTGATATCTAAGTGTTAAAGCTTGAATTATAT
1 GTGATATCCAAAGTCATTTGTATATTCTTAGTGGTGATATCTAAGTGTTAAAGCTTAAATTACAT
* * ** * *
14514650 TTTTTCGATGGTAATATTCGAGTTT-CTTTCGGTG
66 TTTCTCAACAGTAACATTCAAGTTTCCTTT-GGTG
* * * * *
14514684 GTGATATCCAAAGTTATTTGTATTTTCTTAGTGGTGATATCTGAGTGTTAACGCTTAAATTGCAT
1 GTGATATCCAAAGTCATTTGTATATTCTTAGTGGTGATATCTAAGTGTTAAAGCTTAAATTACAT
*
14514749 TTTCTCAACAGTGACATTCAAGTTTCCTTTGGTG
66 TTTCTCAACAGTAACATTCAAGTTTCCTTTGGTG
** * * *
14514783 GCAATATCCCAAGTCATTCGTATCTTCT
1 GTGATATCCAAAGTCATTTGTATATTCT
14514811 CGATGGTGAT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
99 100 0.96
100 4 0.04
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (99 bp):
GTGATATCCAAAGTCATTTGTATATTCTTAGTGGTGATATCTAAGTGTTAAAGCTTAAATTACAT
TTTCTCAACAGTAACATTCAAGTTTCCTTTGGTG
Found at i:14514830 original size:33 final size:33
Alignment explanation
Indices: 14514793--14514855 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
14514783 GCAATATCCC
14514793 AAGTCATTCGTATCTTCTCGATGGTGATATTCG
1 AAGTCATTCGTATCTTCTCGATGGTGATATTCG
* * *
14514826 AAGTCATTTGTATTTTTTCGATGGTGATAT
1 AAGTCATTCGTATCTTCTCGATGGTGATAT
14514856 CCAAGTGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.44
Consensus pattern (33 bp):
AAGTCATTCGTATCTTCTCGATGGTGATATTCG
Found at i:14515030 original size:231 final size:230
Alignment explanation
Indices: 14514318--14515053 Score: 800
Period size: 230 Copynumber: 3.2 Consensus size: 230
14514308 TTTTCTCGAT
* * ** *
14514318 GGTGGTGATATCCAAAGTCATTTGCATCTT-TTTAGTGGTGATATCCGAAGTCATTTGCATATTT
1 GGTGGCGATATCCAAAGTCATTCGCATCTTCTCGA-TGGTGATATCCGAAGTCATTTGCATTTTT
* *
14514382 TCGGTGGTGATATCTGAGTGTTAAAGCTTGAATTATATTTTTTCGATGCTGATATTTAAGTTTTC
65 TCGGTGGTGATATCTAAGTGTTAAAGCTTGAATTATATTTTTTCGATGATGATATTTAAG-TTTC
* * * * *
14514447 TTCGGTGACAATATCCAAAGTTATTTGTATCTT-TTCGATGGTGATATCCGAGTGTTAAAGCTTG
129 TTTGGTGGCGATATCCAAAGTTATTTGTATCTTCTTCG-TGGTGATATCTGAGTGTTAAAGCTTA
* * * *
14514511 AATTGTATTTTCCCGATGGTGATATTTGAGTTTCCTTC
193 AATTGCATTTTCTCAATAGTGATATTTGAGTTTCCTTC
* * * * * *
14514549 TGTGGCGATATCC-AAGTCATTCGCATCATCTCAATAGTGATATCCAAAGTCATTTGCATATTCT
1 GGTGGCGATATCCAAAGTCATTCGCATCTTCTCGATGGTGATATCCGAAGTCATTTGCAT-TTTT
* * **
14514613 T-GGTGGTGATATCTAAGTGTTAAAGCTTGAATTATATTTTTTCGATGGTAATATTCGAGTTTCT
65 TCGGTGGTGATATCTAAGTGTTAAAGCTTGAATTATATTTTTTCGATGATGATATTTAAGTTTCT
* * * *
14514677 TTCGGTGGTGATATCCAAAGTTATTTGTATTTTCTTAGTGGTGATATCTGAGTGTTAACGCTTAA
130 TT-GGTGGCGATATCCAAAGTTATTTGTATCTTCTTCGTGGTGATATCTGAGTGTTAAAGCTTAA
* * ** *
14514742 ATTGCATTTTCTCAACAGTGACATTCAAGTTTCCTTT
194 ATTGCATTTTCTCAATAGTGATATTTGAGTTTCCTTC
* * * * *
14514779 GGTGGCAATATCCCAAGTCATTCGTATCTTCTCGATGGTGATATTCGAAGTCATTTGTATTTTTT
1 GGTGGCGATATCCAAAGTCATTCGCATCTTCTCGATGGTGATATCCGAAGTCATTTGCATTTTTT
* * * * *
14514844 CGATGGTGATATCCAAGTGTTAAAGCTTGAATTGTATTTTTTTCGATAATGATATTTAAATTTCC
66 CGGTGGTGATATCTAAGTGTTAAAGCTTGAATTATA-TTTTTTCGATGATGATATTTAAGTTT-C
* ** ** ** * * *
14514909 TTTAGTGGCGATATCTGAAGTTATTTACATCTTCTTCGTAATGAGATTTGAATGTTAAAGCTTAA
129 TTTGGTGGCGATATCCAAAGTTATTTGTATCTTCTTCGTGGTGATATCTGAGTGTTAAAGCTTAA
* ** *
14514974 ATTACATTTT-TTTATAGTGATATTTGAGTTTTCTTC
194 ATTGCATTTTCTCAATAGTGATATTTGAGTTTCCTTC
* * *
14515010 GGTGGTGATA-CGCAAAGTCATTTGCATCTTCTCGATGGCGATAT
1 GGTGGCGATATC-CAAAGTCATTCGCATCTTCTCGATGGTGATAT
14515054 ACGAGATCAT
Statistics
Matches: 415, Mismatches: 81, Indels: 18
0.81 0.16 0.04
Matches are distributed among these distances:
229 6 0.01
230 184 0.44
231 144 0.35
232 77 0.19
233 4 0.01
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.42
Consensus pattern (230 bp):
GGTGGCGATATCCAAAGTCATTCGCATCTTCTCGATGGTGATATCCGAAGTCATTTGCATTTTTT
CGGTGGTGATATCTAAGTGTTAAAGCTTGAATTATATTTTTTCGATGATGATATTTAAGTTTCTT
TGGTGGCGATATCCAAAGTTATTTGTATCTTCTTCGTGGTGATATCTGAGTGTTAAAGCTTAAAT
TGCATTTTCTCAATAGTGATATTTGAGTTTCCTTC
Found at i:14515727 original size:6 final size:6
Alignment explanation
Indices: 14515716--14515743 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14515706 TGTTGCCAAG
14515716 AAAACC AAAACC AAAACC AAAACC AAAA
1 AAAACC AAAACC AAAACC AAAACC AAAA
14515744 ACAACAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:14515755 original size:16 final size:16
Alignment explanation
Indices: 14515728--14515765 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14515718 AACCAAAACC
*
14515728 AAAACCAAAACC-AAA
1 AAAACAAAAACCTAAA
14515743 AACAACAAAAACCTAAA
1 AA-AACAAAAACCTAAA
14515760 AAAACA
1 AAAACA
14515766 CAACCCCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 13 0.65
17 5 0.25
ACGTcount: A:0.74, C:0.24, G:0.00, T:0.03
Consensus pattern (16 bp):
AAAACAAAAACCTAAA
Found at i:14516417 original size:13 final size:13
Alignment explanation
Indices: 14516401--14516425 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14516391 TTTAATTTTA
14516401 TTTTTGTATAAAC
1 TTTTTGTATAAAC
14516414 TTTTTGTATAAA
1 TTTTTGTATAAA
14516426 ATAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTTGTATAAAC
Found at i:14516551 original size:13 final size:13
Alignment explanation
Indices: 14516528--14516572 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
14516518 AATAAAGAAA
*
14516528 AATATATAATAAAG
1 AATA-ATAATAAAT
14516542 AATAATAATAAAT
1 AATAATAATAAAT
14516555 AATTAAT-ATAAAT
1 AA-TAATAATAAAT
14516568 AATAA
1 AATAA
14516573 AAATTAGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 3 0.10
13 18 0.62
14 8 0.28
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:14516555 original size:7 final size:7
Alignment explanation
Indices: 14516528--14516573 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
14516518 AATAAAGAAA
*
14516528 AATATAT
1 AATAAAT
*
14516535 AATAAAG
1 AATAAAT
14516542 AAT-AAT
1 AATAAAT
14516548 AATAAAT
1 AATAAAT
*
14516555 AATTAAT
1 AATAAAT
14516562 -ATAAAT
1 AATAAAT
14516568 AATAAA
1 AATAAA
14516574 AATTAGTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
6 10 0.31
7 22 0.69
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (7 bp):
AATAAAT
Found at i:14516555 original size:17 final size:16
Alignment explanation
Indices: 14516517--14516556 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14516507 TAATGAACAA
14516517 AAATAAAGAAAAATAT
1 AAATAAAGAAAAATAT
*
14516533 ATAATAAAGAATAATAAT
1 A-AATAAAGAAAAAT-AT
14516551 AAATAA
1 AAATAA
14516557 TTAATATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 17 0.81
18 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAGAAAAATAT
Found at i:14525153 original size:28 final size:29
Alignment explanation
Indices: 14525102--14525168 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
14525092 TTTGAAAGAT
* * *
14525102 TTTTAGGTTTATTGTTGTAATCTTTTCTA
1 TTTTAGTTTTAGTGTTGTAATCTTTCCTA
*
14525131 TTTTAGTTTTAGTG-TGTTATCTTTCCTA
1 TTTTAGTTTTAGTGTTGTAATCTTTCCTA
14525159 TTTTAGTTTT
1 TTTTAGTTTT
14525169 GGAGATTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 22 0.65
29 12 0.35
ACGTcount: A:0.15, C:0.07, G:0.13, T:0.64
Consensus pattern (29 bp):
TTTTAGTTTTAGTGTTGTAATCTTTCCTA
Found at i:14526181 original size:20 final size:20
Alignment explanation
Indices: 14526156--14526197 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14526146 GCAATTTAAT
14526156 ATTTCAGGTCCCACGTTTGA
1 ATTTCAGGTCCCACGTTTGA
14526176 ATTTCAGGTCCCACGTTTGA
1 ATTTCAGGTCCCACGTTTGA
14526196 AT
1 AT
14526198 GGATTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (20 bp):
ATTTCAGGTCCCACGTTTGA
Found at i:14532225 original size:72 final size:72
Alignment explanation
Indices: 14532099--14532242 Score: 252
Period size: 72 Copynumber: 2.0 Consensus size: 72
14532089 ACTTTGCAGG
* *
14532099 TATGGCTTAGGTGTAGGCTGTGTTTCTGATTAGGGTTTAACTTATAACTATCTATTTATGTTATT
1 TATGACTTAGGTGTAGGCTATGTTTCTGATTAGGGTTTAACTTATAACTATCTATTTATGTTATT
*
14532164 TCTATCA
66 TATATCA
*
14532171 TATGACTTTGGTGTAGGCTATGTTTCTGATTAGGGTTTAACTTATAACTATCTATTTATGTTATT
1 TATGACTTAGGTGTAGGCTATGTTTCTGATTAGGGTTTAACTTATAACTATCTATTTATGTTATT
14532236 TATATCA
66 TATATCA
14532243 ACCTAATGAG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.48
Consensus pattern (72 bp):
TATGACTTAGGTGTAGGCTATGTTTCTGATTAGGGTTTAACTTATAACTATCTATTTATGTTATT
TATATCA
Found at i:14541129 original size:22 final size:22
Alignment explanation
Indices: 14541103--14541156 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
14541093 CCAAATGCCT
*
14541103 TATTTTT-GCAAGTTTAAAATAA
1 TATTTTTAACAAGTTTAAAAT-A
* *
14541125 TATTTTTAACATGTTTAAAATT
1 TATTTTTAACAAGTTTAAAATA
14541147 TATTTTTAAC
1 TATTTTTAAC
14541157 TAAAAGCATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.52
Consensus pattern (22 bp):
TATTTTTAACAAGTTTAAAATA
Found at i:14541140 original size:23 final size:22
Alignment explanation
Indices: 14541114--14541156 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14541104 ATTTTTGCAA
14541114 GTTTAAAATAATATTTTTAACAT
1 GTTTAAAAT-ATATTTTTAACAT
*
14541137 GTTTAAAATTTATTTTTAAC
1 GTTTAAAATATATTTTTAAC
14541157 TAAAAGCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
GTTTAAAATATATTTTTAACAT
Found at i:14546678 original size:55 final size:55
Alignment explanation
Indices: 14546619--14546756 Score: 195
Period size: 55 Copynumber: 2.5 Consensus size: 55
14546609 TTAGCATCTG
*
14546619 TCAGTATAAACTTGTATTTTTTAATTTTCTTACCTATATTAATGGTTAGAGACTA
1 TCAGTATAAACTTGTATGTTTTAATTTTCTTACCTATATTAATGGTTAGAGACTA
* * * * * *
14546674 TCAGTATAAAATTGTATGCTTTAATTTTCTTATCTTTATTAATGGTTAGAGAGTG
1 TCAGTATAAACTTGTATGTTTTAATTTTCTTACCTATATTAATGGTTAGAGACTA
* *
14546729 TCAGTATAGACTTATATGTTTTAATTTT
1 TCAGTATAAACTTGTATGTTTTAATTTT
14546757 TTAATTATAT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 72 1.00
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (55 bp):
TCAGTATAAACTTGTATGTTTTAATTTTCTTACCTATATTAATGGTTAGAGACTA
Found at i:14546884 original size:24 final size:24
Alignment explanation
Indices: 14546852--14546898 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14546842 TTTTTTTAAA
* *
14546852 AATTATATTTTTAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
14546877 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
14546899 GTTATGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:14547056 original size:15 final size:15
Alignment explanation
Indices: 14547036--14547071 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
14547026 TATCAAGTCT
*
14547036 GATAAAACAAACATC
1 GATAAAACAAACATA
14547051 GATAAAACAAACATA
1 GATAAAACAAACATA
14547066 GATAAA
1 GATAAA
14547072 GAGTTACACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.14, G:0.08, T:0.14
Consensus pattern (15 bp):
GATAAAACAAACATA
Found at i:14547669 original size:68 final size:68
Alignment explanation
Indices: 14547597--14547723 Score: 164
Period size: 68 Copynumber: 1.9 Consensus size: 68
14547587 ACAGAAGATA
** * * * *
14547597 AGAAGATAATCATCCATTCATATACCGGTAGAAATAATTTTATAAATATCTTATTCATTCATATA
1 AGAAGATAATCAAACATTCATATACCAGCAAAAATAATTTTATAAATATCATATTCATTCATATA
14547662 TAC
66 TAC
* * * *
14547665 AGAAGGTAATCAAACATTTATATACTAGCAAAAATAGTTTTATAAATATCATATTCATT
1 AGAAGATAATCAAACATTCATATACCAGCAAAAATAATTTTATAAATATCATATTCATT
14547724 AGTGTAATGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 49 1.00
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (68 bp):
AGAAGATAATCAAACATTCATATACCAGCAAAAATAATTTTATAAATATCATATTCATTCATATA
TAC
Found at i:14558936 original size:45 final size:45
Alignment explanation
Indices: 14558899--14558988 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
14558889 TTTTGGCCTT
* *
14558899 TATGGCCAAAAACGTCTTGAATAATCCTCTTCAATTTTTGTGATG
1 TATGGCAAAAAAAGTCTTGAATAATCCTCTTCAATTTTTGTGATG
* *
14558944 TATGGCAAAAAAAGTTTTGAATAATCCTCTTCAATTTTTATGATG
1 TATGGCAAAAAAAGTCTTGAATAATCCTCTTCAATTTTTGTGATG
14558989 AGATTATTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (45 bp):
TATGGCAAAAAAAGTCTTGAATAATCCTCTTCAATTTTTGTGATG
Found at i:14568461 original size:36 final size:36
Alignment explanation
Indices: 14568411--14568503 Score: 109
Period size: 36 Copynumber: 2.6 Consensus size: 36
14568401 TAAAGACTAC
* *
14568411 TACTTTAGTCTAGAAAGGTAGA-GATTTAGAGGTTG
1 TACTTTAGTTTAGAAAGGTAGAGGAGTTAGAGGTTG
* * *
14568446 TTATTTTAGTTTAGAAAGATAAAGGAGTTAGAGGTTG
1 -TACTTTAGTTTAGAAAGGTAGAGGAGTTAGAGGTTG
14568483 TACTTTAGTCTT-GAAAGGTAG
1 TACTTTAGT-TTAGAAAGGTAG
14568504 TATGTAAGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
36 33 0.70
37 14 0.30
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (36 bp):
TACTTTAGTTTAGAAAGGTAGAGGAGTTAGAGGTTG
Found at i:14569333 original size:14 final size:15
Alignment explanation
Indices: 14569316--14569349 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
14569306 ATTTAAACAA
*
14569316 ATAAACTTAT-AATT
1 ATAAAATTATAAATT
14569330 ATAAAATTATAAATT
1 ATAAAATTATAAATT
14569345 ATAAA
1 ATAAA
14569350 TAATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATTATAAATT
Found at i:14569372 original size:18 final size:18
Alignment explanation
Indices: 14569340--14569374 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14569330 ATAAAATTAT
14569340 AAATTATAAATAATAAAA
1 AAATTATAAATAATAAAA
14569358 AAATT-TAAATGAATAAA
1 AAATTATAAAT-AATAAA
14569375 TTTTAAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
AAATTATAAATAATAAAA
Found at i:14569489 original size:10 final size:10
Alignment explanation
Indices: 14569474--14569500 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14569464 TAAATTTAAT
14569474 AAATAAATAA
1 AAATAAATAA
14569484 AAATAAATAA
1 AAATAAATAA
14569494 AAATAAA
1 AAATAAA
14569501 ATATATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAATAA
Found at i:14569677 original size:12 final size:12
Alignment explanation
Indices: 14569660--14569712 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
14569650 TACTTTAATT
14569660 TTTTAATTATTA
1 TTTTAATTATTA
14569672 TTTTAATTATTA
1 TTTTAATTATTA
* *
14569684 CTTTAA-AAGTTA
1 TTTTAATTA-TTA
*
14569696 -TTTAATTTTTA
1 TTTTAATTATTA
14569707 TTTTAA
1 TTTTAA
14569713 AAATACATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 9 0.26
12 25 0.74
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (12 bp):
TTTTAATTATTA
Found at i:14569891 original size:29 final size:29
Alignment explanation
Indices: 14569845--14569916 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
14569835 ATCTTTAATC
* * *
14569845 AAAATTTTTAATAAAATATCTAAATTTTA
1 AAAATATTTAATTAAATATCTAAATTATA
* * *
14569874 AAAATATTTAATTTAATATTTGAATTATA
1 AAAATATTTAATTAAATATCTAAATTATA
*
14569903 AATATA-TTAATTAA
1 AAAATATTTAATTAA
14569917 TTTAATACTT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 7 0.20
29 28 0.80
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (29 bp):
AAAATATTTAATTAAATATCTAAATTATA
Found at i:14569893 original size:12 final size:14
Alignment explanation
Indices: 14569875--14569915 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
14569865 TAAATTTTAA
14569875 AAATATTTAATT-T
1 AAATATTTAATTAT
14569888 -AATATTTGAATTAT
1 AAATATTT-AATTAT
14569902 AAATATATTAATTA
1 AAATAT-TTAATTA
14569916 ATTTAATACT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 7 0.29
13 4 0.17
14 1 0.04
15 10 0.42
16 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
AAATATTTAATTAT
Found at i:14575314 original size:14 final size:14
Alignment explanation
Indices: 14575294--14575324 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
14575284 CGTGGGGTCA
14575294 ATTTTTTTATTT-T
1 ATTTTTTTATTTCT
14575307 ATTTTTTTATTTCT
1 ATTTTTTTATTTCT
14575321 ATTT
1 ATTT
14575325 ATCGTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
ATTTTTTTATTTCT
Found at i:14575449 original size:18 final size:18
Alignment explanation
Indices: 14575423--14575461 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14575413 TCATAATATT
14575423 TAATAATATATACT-AATA
1 TAATAATATATA-TAAATA
*
14575441 TAATCATATATATAAATA
1 TAATAATATATATAAATA
14575459 TAA
1 TAA
14575462 AATTAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATAATATATATAAATA
Found at i:14575826 original size:16 final size:16
Alignment explanation
Indices: 14575805--14575855 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
14575795 ATTATTTAAT
14575805 AAAAATAGAAAAAGAA
1 AAAAATAGAAAAAGAA
14575821 AAAAATA-AGAAAAGACGA
1 AAAAATAGA-AAAAGA--A
14575839 AAAAA-AGAAAAA-AA
1 AAAAATAGAAAAAGAA
14575853 AAA
1 AAA
14575856 TCATCATGCG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
14 4 0.13
15 1 0.03
16 14 0.45
17 5 0.16
18 7 0.23
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (16 bp):
AAAAATAGAAAAAGAA
Found at i:14576531 original size:14 final size:13
Alignment explanation
Indices: 14576504--14576542 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
14576494 CCATCCAGAA
14576504 ATTTATTT-ATTT
1 ATTTATTTAATTT
14576516 ATTTAATTTAATTT
1 ATTT-ATTTAATTT
14576530 ATTTTATTTAATT
1 A-TTTATTTAATT
14576543 GTTCGATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
13 4 0.17
14 13 0.54
15 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTATTTAATTT
Found at i:14577912 original size:2 final size:2
Alignment explanation
Indices: 14577905--14577936 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14577895 ATGTATGATC
14577905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14577937 TTCAGGGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14582073 original size:22 final size:20
Alignment explanation
Indices: 14582047--14582098 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
14582037 TTGGATATGT
*
14582047 AAAATAAATATAATAAGGATAA
1 AAAATAAAAATAATAA-GA-AA
*
14582069 AAAATAAAAATACTAAGAAA
1 AAAATAAAAATAATAAGAAA
14582089 AAATATAAAA
1 AAA-ATAAAA
14582099 TTTAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 8 0.30
22 14 0.52
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (20 bp):
AAAATAAAAATAATAAGAAA
Found at i:14582963 original size:3 final size:3
Alignment explanation
Indices: 14582955--14583001 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
14582945 TGGAATAACA
14582955 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14583002 AAACTAAAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14583576 original size:3 final size:3
Alignment explanation
Indices: 14583562--14583644 Score: 63
Period size: 3 Copynumber: 29.7 Consensus size: 3
14583552 ATTGATTTTC
* * *
14583562 ATT ATT AGT ATT ATT TTT A-T ATT A-T ATT AATT -TT ATT A-T AGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
* *
14583604 A-T ATT A-T AGT A-T ATG ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14583645 ATGCTATTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
2 14 0.21
3 49 0.74
4 3 0.05
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:14583595 original size:16 final size:17
Alignment explanation
Indices: 14583564--14583597 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14583554 TGATTTTCAT
*
14583564 TATTAGTATTATTTTTA
1 TATTAGTATTAATTTTA
14583581 TATTA-TATTAATTTTA
1 TATTAGTATTAATTTTA
14583597 T
1 T
14583598 TATAGTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTAGTATTAATTTTA
Found at i:14584108 original size:40 final size:40
Alignment explanation
Indices: 14584038--14584113 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
14584028 AAATTTTGGG
* * *
14584038 GATTTAGATTTCTAGGGTTGATTTGGAGTTTTTGGGTTTA
1 GATTTAAATTTCTAGGATTGATTTGAAGTTTTTGGGTTTA
*
14584078 GATTTAAATTTCTAGGATTAGGTTT-AAGTTTTTGGG
1 GATTTAAATTTCTAGGATT-GATTTGAAGTTTTTGGG
14584114 AGTTTTCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 27 0.87
41 4 0.13
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.49
Consensus pattern (40 bp):
GATTTAAATTTCTAGGATTGATTTGAAGTTTTTGGGTTTA
Found at i:14584262 original size:5 final size:5
Alignment explanation
Indices: 14584254--14584401 Score: 84
Period size: 5 Copynumber: 27.0 Consensus size: 5
14584244 CTATACTATC
* * * * *
14584254 ATTAT ATTACT ATTGT ACTATT ATTAC ATTATT ATTAT AGTAT GTTGAT
1 ATTAT ATTA-T ATTAT ATTA-T ATTAT ATTA-T ATTAT ATTAT ATT-AT
*
14584303 ATTAT ATTACCTT ATTAT ATTAGT ATTAT ATTAT ATTAT AGTAT A-T-T
1 ATTAT ATTA---T ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT
*
14584350 ATTAT ATTAT ATTAGGTT ATCAT ATTAT GATTATT ATTATT ATTAAT ATTAT
1 ATTAT ATTAT ATTA---T ATTAT ATTAT -ATTA-T ATTA-T ATT-AT ATTAT
14584402 TATATTTGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
3 2 0.02
4 2 0.02
5 61 0.54
6 38 0.33
7 2 0.02
8 9 0.08
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:14584279 original size:22 final size:22
Alignment explanation
Indices: 14584236--14584289 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
14584226 GCCACTATTG
14584236 TTACATTACTA---TACTATCA
1 TTACATTACTATTGTACTATCA
* *
14584255 TTATATTACTATTGTACTATTA
1 TTACATTACTATTGTACTATCA
*
14584277 TTACATTATTATT
1 TTACATTACTATT
14584290 ATAGTATGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 10 0.36
22 18 0.64
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (22 bp):
TTACATTACTATTGTACTATCA
Found at i:14584318 original size:32 final size:29
Alignment explanation
Indices: 14584254--14584400 Score: 95
Period size: 29 Copynumber: 4.9 Consensus size: 29
14584244 CTATACTATC
* * *
14584254 ATTATATTACTATTGTACTATTATTACATT
1 ATTATATTAGTATTATATTA-TATTACATT
*
14584284 ATTAT-TATAGTATGTTGATATTATATTACCTT
1 ATTATAT-TAGTA--TT-ATATTATATTACATT
* *
14584316 ATTATATTAGTATTATATTATATTATAGT
1 ATTATATTAGTATTATATTATATTACATT
**
14584345 A-TATTATTA-TATTATATTAGGTTATCA-T
1 ATTA-TATTAGTATTATATTATATTA-CATT
*
14584373 ATTATGATTATTATTATTATTAATATTA
1 ATTAT-ATTAGTATTA-TATT-ATATTA
14584401 TTATATTTGA
Statistics
Matches: 93, Mismatches: 12, Indels: 22
0.73 0.09 0.17
Matches are distributed among these distances:
28 18 0.19
29 26 0.28
30 16 0.17
31 4 0.04
32 24 0.26
33 5 0.05
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.54
Consensus pattern (29 bp):
ATTATATTAGTATTATATTATATTACATT
Found at i:14584324 original size:18 final size:16
Alignment explanation
Indices: 14584301--14584422 Score: 106
Period size: 18 Copynumber: 7.1 Consensus size: 16
14584291 TAGTATGTTG
14584301 ATATTATATTACCTTATT
1 ATATTATATTA--TTATT
14584319 ATATTAGTATTA-TATT
1 ATATTA-TATTATTATT
14584335 ATATTATAGTATATTATT
1 ATATTATA-T-TATTATT
*
14584353 ATATTATATTAGGTTATC
1 ATATTATATTA--TTATT
14584371 ATATTATGATTATTATT
1 ATATTAT-ATTATTATT
14584388 ATTATTA-A-TATTATT
1 A-TATTATATTATTATT
*
14584403 ATATTTGATATTTTTATT
1 ATA-TT-ATATTATTATT
14584421 AT
1 AT
14584423 TTTTATAAGA
Statistics
Matches: 89, Mismatches: 3, Indels: 24
0.77 0.03 0.21
Matches are distributed among these distances:
14 2 0.02
15 12 0.13
16 15 0.17
17 9 0.10
18 42 0.47
19 9 0.10
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.57
Consensus pattern (16 bp):
ATATTATATTATTATT
Found at i:14584386 original size:9 final size:8
Alignment explanation
Indices: 14584314--14584423 Score: 65
Period size: 8 Copynumber: 13.6 Consensus size: 8
14584304 TTATATTACC
14584314 TTATTATA
1 TTATTATA
*
14584322 TTAGTAT-
1 TTATTATA
14584329 TATATTATA
1 T-TATTATA
14584338 TTA-TAGTA
1 TTATTA-TA
14584346 -TATTAT-
1 TTATTATA
14584352 TATATTATA
1 T-TATTATA
14584361 TTAGGTTATCA
1 TTA--TTAT-A
14584372 -TATTATGA
1 TTATTAT-A
14584380 TTATTATTA
1 TTATTA-TA
14584389 TTATTAATA
1 TTATT-ATA
14584398 TTATTATA
1 TTATTATA
*
14584406 TT-TGATA
1 TTATTATA
14584413 TT-TT-TA
1 TTATTATA
14584419 TTATT
1 TTATT
14584424 TTTATAAGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 29
0.71 0.04 0.25
Matches are distributed among these distances:
6 4 0.05
7 15 0.18
8 35 0.42
9 20 0.24
10 8 0.10
11 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:14584392 original size:15 final size:14
Alignment explanation
Indices: 14584272--14584407 Score: 67
Period size: 13 Copynumber: 9.9 Consensus size: 14
14584262 ACTATTGTAC
*
14584272 TATTATTACATTAT
1 TATTATTATATTAT
14584286 TATTA-TAGTATGT-T
1 TATTATTA-TAT-TAT
*
14584300 GA-TATTATATTA-
1 TATTATTATATTAT
** *
14584312 CCTTATTATATTAG
1 TATTATTATATTAT
14584326 TATTA-TAT-TATAT
1 TATTATTATAT-TAT
*
14584339 TA-TAGTATATTAT
1 TATTATTATATTAT
14584352 TA-TATTATATTAGGT
1 TATTATTATATTA--T
14584367 TATCATATTATGATTAT
1 TAT--TATTAT-ATTAT
*
14584384 TATTA-T-TATTAA
1 TATTATTATATTAT
14584396 TATTATTATATT
1 TATTATTATATT
14584408 TGATATTTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 34
0.69 0.06 0.24
Matches are distributed among these distances:
12 13 0.14
13 43 0.45
14 20 0.21
15 6 0.06
17 4 0.04
18 6 0.06
19 4 0.04
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (14 bp):
TATTATTATATTAT
Found at i:14584423 original size:3 final size:3
Alignment explanation
Indices: 14584314--14584404 Score: 63
Period size: 3 Copynumber: 32.3 Consensus size: 3
14584304 TTATATTACC
* *
14584314 TTA TTA -TA TTA GTA TTA -TA TTA -TA TTA -TA GTA -TA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
14584356 TTA -TA TTA GGTTA TCA -TA TTA TGA TTA TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14584401 TTA T
1 TTA T
14584405 ATTTGATATT
Statistics
Matches: 70, Mismatches: 8, Indels: 20
0.71 0.08 0.20
Matches are distributed among these distances:
2 15 0.21
3 52 0.74
5 3 0.04
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:14585228 original size:25 final size:25
Alignment explanation
Indices: 14585191--14585239 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14585181 TTTTGCAGGT
*
14585191 TTTTTTTCATTTTCATTTT-TTTTA
1 TTTTTTTAATTTTCATTTTATTTTA
*
14585215 TTTTTTTAAGTTTTTATTTTATTTT
1 TTTTTTTAA-TTTTCATTTTATTTT
14585240 TAATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 9 0.43
26 4 0.19
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTTTTTAATTTTCATTTTATTTTA
Found at i:14585247 original size:30 final size:32
Alignment explanation
Indices: 14585193--14585252 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
14585183 TTGCAGGTTT
**
14585193 TTTTTCATTTTCATTTTTTTTATTTTTTTAAG
1 TTTTTCATTTTCATTTTTAATATTTTTTTAAG
14585225 TTTTT-ATTTT-ATTTTTAATATTTTTTTA
1 TTTTTCATTTTCATTTTTAATATTTTTTTA
14585253 TTTAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 16 0.62
31 5 0.19
32 5 0.19
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (32 bp):
TTTTTCATTTTCATTTTTAATATTTTTTTAAG
Found at i:14585262 original size:21 final size:19
Alignment explanation
Indices: 14585190--14585262 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 19
14585180 ATTTTGCAGG
* *
14585190 TTTTTTTTCATTTTCATTT
1 TTTTTTTTAATTTTAATTT
*
14585209 TTTTTATTT--TTTTAAGTT
1 TTTTT-TTTAATTTTAATTT
* *
14585227 TTTATTTTATTTTTAATATT
1 TTTTTTTTAATTTTAAT-TT
14585247 TTTTTATTTAATTTTA
1 TTTTT-TTTAATTTTA
14585263 CTGGTTTTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
17 3 0.07
18 11 0.26
19 11 0.26
20 9 0.21
21 9 0.21
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTTTTTTAATTTTAATTT
Found at i:14585400 original size:45 final size:45
Alignment explanation
Indices: 14585329--14585417 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 45
14585319 AAATCTTTTC
* *
14585329 AAAAATAAAAAAGCTAAATAAAAAATC-TTTTCAAATAAGTTTAA
1 AAAAAAAAAAAAGCTAAATAAAAAATCTTTTTCAAATAAATTTAA
*
14585373 AAAAAAAAAAAAGTCTAAGA-AAGAAATCTTTTTCAAATAAATTTA
1 AAAAAAAAAAAAG-CTAA-ATAAAAAATCTTTTTCAAATAAATTTA
14585418 TGGAATCCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 12 0.31
45 11 0.28
46 16 0.41
ACGTcount: A:0.61, C:0.07, G:0.06, T:0.27
Consensus pattern (45 bp):
AAAAAAAAAAAAGCTAAATAAAAAATCTTTTTCAAATAAATTTAA
Found at i:14586267 original size:41 final size:41
Alignment explanation
Indices: 14586213--14586294 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
14586203 GTCTTTCCTA
* *
14586213 TTTATTTCTTTTCACTACTTATACTTGCCTAATTATTTATT
1 TTTACTTCCTTTCACTACTTATACTTGCCTAATTATTTATT
* * *
14586254 TTTACTTCCTTTCATTACTTATGCTTGCTTAATTATTTATT
1 TTTACTTCCTTTCACTACTTATACTTGCCTAATTATTTATT
14586295 GTATATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.21, C:0.17, G:0.04, T:0.59
Consensus pattern (41 bp):
TTTACTTCCTTTCACTACTTATACTTGCCTAATTATTTATT
Found at i:14587446 original size:134 final size:133
Alignment explanation
Indices: 14587246--14587513 Score: 509
Period size: 134 Copynumber: 2.0 Consensus size: 133
14587236 TTAAGAGTGG
14587246 GAAAAGAGATCATAGATTTATACATTAAAAAAAAAGAGATCATAAGGGTATTCCATGGAAAATTC
1 GAAAAGAGATCATAGATTTATACATTAAAAAAAAAGAGATCATAAGGGTATTCCATGGAAAATTC
14587311 TTTGATATTTCATTGTTAAAAATCCAAATAATGATCAGGGAATGAATGTGTTCACTCTAGCCATA
66 TTTGATATTTCATTGTTAAAAATCCAAATAATGATCAGGGAATGAATGTGTTCACTCTAGCCATA
14587376 TCT
131 TCT
*
14587379 GAAAAGAGATCATAGATTTATACATTAAAAAAAAAAGAGATCATAAGGGTATTTCATGGAAAATT
1 GAAAAGAGATCATAGATTTATACATT-AAAAAAAAAGAGATCATAAGGGTATTCCATGGAAAATT
*
14587444 CTTTGATATTTCATTGTTAAAAATCCAAATAATGATCAGGGAATGAATGTGTTCGCTCTAGCCAT
65 CTTTGATATTTCATTGTTAAAAATCCAAATAATGATCAGGGAATGAATGTGTTCACTCTAGCCAT
14587509 ATCT
130 ATCT
14587513 G
1 G
14587514 GAATGGTCAT
Statistics
Matches: 132, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
133 26 0.20
134 106 0.80
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (133 bp):
GAAAAGAGATCATAGATTTATACATTAAAAAAAAAGAGATCATAAGGGTATTCCATGGAAAATTC
TTTGATATTTCATTGTTAAAAATCCAAATAATGATCAGGGAATGAATGTGTTCACTCTAGCCATA
TCT
Found at i:14591405 original size:181 final size:181
Alignment explanation
Indices: 14591100--14591440 Score: 425
Period size: 181 Copynumber: 1.9 Consensus size: 181
14591090 TTTGCCTAAT
* * * ** *
14591100 AGTTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGTTCTTTTTATTTTG
1 AGTTCAAATAATTATAACTATTTAAACAATTATCTATTTCAAATTATTATGTACCATTTATATTG
* * * * *
14591165 TCATAAAACAAACGTTTTTATACATATAAGTTTGTTCGGAATAAAACAATATTAATTTATTAATA
66 TCATAAAACAAACATTTCTATACATATAAGTTTATTCAGAATAAAACAATACTAATTTATTAATA
14591230 TTTTGAAAATTAAGAAGTAAGAAATTTAAAATATAAAATTGTTTACTAAACC
131 TTTTG-AAATTAAGAAGTAAGAAATTTAAAATATAAAATTGTTTACTAAACC
* * * *
14591282 AGTTCAATTAGTTATAACTATTTGAACAATTATTTATTTCAAATTATTATG-ACCATTTATATTG
1 AGTTCAAATAATTATAACTATTTAAACAATTATCTATTTCAAATTATTATGTACCATTTATATTG
* ** * * **
14591346 TCATAAAATAATTATTTCTGTTCATAT-AGTTTTATTCAGAATAAAGTAATACTAATTTATTAAT
66 TCATAAAACAAACATTTCTATACATATAAG-TTTATTCAGAATAAAACAATACTAATTTATTAAT
* * *
14591410 ATTTTGAAATTAATAAGTAATAGATTTAAAA
130 ATTTTGAAATTAAGAAGTAAGAAATTTAAAA
14591441 AATGAATCAA
Statistics
Matches: 133, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
180 24 0.18
181 64 0.48
182 45 0.34
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (181 bp):
AGTTCAAATAATTATAACTATTTAAACAATTATCTATTTCAAATTATTATGTACCATTTATATTG
TCATAAAACAAACATTTCTATACATATAAGTTTATTCAGAATAAAACAATACTAATTTATTAATA
TTTTGAAATTAAGAAGTAAGAAATTTAAAATATAAAATTGTTTACTAAACC
Found at i:14591542 original size:19 final size:19
Alignment explanation
Indices: 14591518--14591558 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14591508 TTATGACTTT
* * *
14591518 TTGTTTTATCATAAAATAA
1 TTGTTTCATCACAAAACAA
14591537 TTGTTTCATCACAAAACAA
1 TTGTTTCATCACAAAACAA
14591556 TTG
1 TTG
14591559 CTTCTGTCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (19 bp):
TTGTTTCATCACAAAACAA
Found at i:14591696 original size:16 final size:17
Alignment explanation
Indices: 14591663--14591696 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14591653 AAACAAGTAC
14591663 AAATAATTATGACTATTT
1 AAATAATTAT-ACTATTT
14591681 AAATAATTAT-CTATTT
1 AAATAATTATACTATTT
14591697 CGCTATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (17 bp):
AAATAATTATACTATTT
Found at i:14592692 original size:11 final size:10
Alignment explanation
Indices: 14592649--14592702 Score: 51
Period size: 10 Copynumber: 5.3 Consensus size: 10
14592639 TAATCTATAC
14592649 AATTATAATT
1 AATTATAATT
14592659 AATTA-AATT
1 AATTATAATT
14592668 AA--ATAATTTT
1 AATTATAA--TT
14592678 AATTATCAATT
1 AATTAT-AATT
14592689 AATTTATAATT
1 AA-TTATAATT
14592700 AAT
1 AAT
14592703 AAAAACTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
7 1 0.03
8 2 0.05
9 6 0.16
10 10 0.27
11 10 0.27
12 6 0.16
13 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (10 bp):
AATTATAATT
Found at i:14599327 original size:19 final size:19
Alignment explanation
Indices: 14599303--14599353 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 19
14599293 TATTTTTGCC
*
14599303 ACTATTGTTACATTACTAT
1 ACTATTATTACATTACTAT
*
14599322 ACTATTATTATATTACTACTAT
1 ACTATTATTACA-T--TACTAT
14599344 ACTATTATTA
1 ACTATTATTA
14599354 TTTTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 10 0.37
20 1 0.04
22 16 0.59
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (19 bp):
ACTATTATTACATTACTAT
Found at i:14599332 original size:3 final size:3
Alignment explanation
Indices: 14599324--14599525 Score: 82
Period size: 3 Copynumber: 72.3 Consensus size: 3
14599314 ATTACTATAC
* * * *
14599324 TAT TAT TA- TAT TAC TAC TA- TAC TAT TAT TAT T-T TAT TAT TA- TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** *
14599368 TAT TA- TAT TA- TAT TAT TAT TAT GGTA- TGT TGC TAT TA- TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT TAT TAT TAT
* * *
14599411 TAT TGT TA- TAT TAG TAT TA- TAT TA- TAT TA- TAG TA- TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* **
14599453 TAT TA- TAT TAGGT TAT CA- TAT TAT GGT TAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
14599497 TAT T-T GA- TAG TAT TAT TAT TTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14599526 TTCATCATAT
Statistics
Matches: 152, Mismatches: 24, Indels: 46
0.68 0.11 0.21
Matches are distributed among these distances:
2 34 0.22
3 113 0.74
5 5 0.03
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:14599333 original size:11 final size:11
Alignment explanation
Indices: 14599314--14599525 Score: 97
Period size: 11 Copynumber: 19.5 Consensus size: 11
14599304 CTATTGTTAC
* *
14599314 ATTACTATACT
1 ATTATTATATT
14599325 ATTATTATATT
1 ATTATTATATT
* * *
14599336 ACTACTATACT
1 ATTATTATATT
*
14599347 ATTATTATTTT
1 ATTATTATATT
*
14599358 ATTATTATAGT
1 ATTATTATATT
14599369 ATTATATTATATT
1 A-T-TATTATATT
**
14599382 ATTATTATGGT
1 ATTATTATATT
**
14599393 ATGT-TGCTATT
1 AT-TATTATATT
*
14599404 A-TA-T-TACT
1 ATTATTATATT
*
14599412 ATTGTTATATT
1 ATTATTATATT
*
14599423 AGTATTATATT
1 ATTATTATATT
14599434 A-TATTATAGTAT
1 ATTATTATA-T-T
14599446 ATTATTATATT
1 ATTATTATATT
**
14599457 A-TATTAGGTT
1 ATTATTATATT
*
14599467 ATCATATTATGGTT
1 AT--TATTAT-ATT
14599481 ATTA-T-TATT
1 ATTATTATATT
14599490 ATTATTATATT
1 ATTATTATATT
*
14599501 -TGA-TAGTATT
1 ATTATTA-TATT
14599511 ATTATT-T-TT
1 ATTATTATATT
14599520 ATTATT
1 ATTATT
14599526 TTCATCATAT
Statistics
Matches: 152, Mismatches: 30, Indels: 40
0.68 0.14 0.18
Matches are distributed among these distances:
8 4 0.03
9 18 0.12
10 25 0.16
11 70 0.46
12 9 0.06
13 21 0.14
14 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (11 bp):
ATTATTATATT
Found at i:14599376 original size:5 final size:5
Alignment explanation
Indices: 14599327--14599462 Score: 79
Period size: 5 Copynumber: 27.0 Consensus size: 5
14599317 ACTATACTAT
* *
14599327 TATTA TATTA CTACTA TACTA TTATTA T-TT- TATTA T-TATA GTATTA
1 TATTA TATTA -TATTA TATTA -TATTA TATTA TATTA TAT-TA -TATTA
** * * *
14599373 TATTA TATTA TTATTA TGGTA TGTTGC TATTA TATTA CTA-T- TGTTA
1 TATTA TATTA -TATTA TATTA TATT-A TATTA TATTA -TATTA TATTA
*
14599419 TATTA GTATTA TATTA TATTA TAGTA TA-T- TATTA TATTA TATTA
1 TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
14599463 GGTTATCATA
Statistics
Matches: 105, Mismatches: 11, Indels: 30
0.72 0.08 0.21
Matches are distributed among these distances:
3 4 0.04
4 8 0.08
5 66 0.63
6 26 0.25
7 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:14599456 original size:8 final size:8
Alignment explanation
Indices: 14599324--14599525 Score: 75
Period size: 8 Copynumber: 24.9 Consensus size: 8
14599314 ATTACTATAC
14599324 TATTATTA
1 TATTATTA
*
14599332 TATTACTA
1 TATTATTA
*
14599340 CTA-TACTA
1 -TATTATTA
*
14599348 TTATTATTT
1 -TATTATTA
14599357 TATTATTA
1 TATTATTA
*
14599365 TAGTATTA
1 TATTATTA
14599373 TATTA-TA
1 TATTATTA
14599380 TTATTATTA
1 -TATTATTA
**
14599389 TGGTATGT-
1 TATTAT-TA
**
14599397 TGCTATTA
1 TATTATTA
*
14599405 TATTA--C
1 TATTATTA
*
14599411 TATTGTTA
1 TATTATTA
*
14599419 TATTAGTA
1 TATTATTA
14599427 T-TATATTA
1 TAT-TATTA
14599435 TATTATAGTA
1 TATTAT--TA
14599445 TATTATTA
1 TATTATTA
14599453 TATTA-TA
1 TATTATTA
*
14599460 TTAGGTTATCA
1 -TA--TTATTA
14599471 TATTATGGT-
1 TATTAT--TA
14599480 TATTATTA
1 TATTATTA
14599488 TTATTATTA
1 -TATTATTA
*
14599497 TATT-TGA
1 TATTATTA
*
14599504 TAGTATTA
1 TATTATTA
14599512 TTATT-TT-
1 -TATTATTA
14599519 TATTATT
1 TATTATT
14599526 TTCATCATAT
Statistics
Matches: 147, Mismatches: 24, Indels: 47
0.67 0.11 0.22
Matches are distributed among these distances:
6 8 0.05
7 14 0.10
8 85 0.58
9 26 0.18
10 13 0.09
11 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (8 bp):
TATTATTA
Found at i:14599476 original size:23 final size:23
Alignment explanation
Indices: 14599324--14599462 Score: 97
Period size: 24 Copynumber: 5.8 Consensus size: 23
14599314 ATTACTATAC
* *
14599324 TATTATTATATTACTACTATA--C
1 TATTATTATATTA-TATTATAGTA
*
14599346 TATTATTATTTTATTATTATAGTA
1 TATTATTATATTA-TATTATAGTA
*
14599370 T-TATATTATATTATTATTATGGTA
1 TAT-TATTATATTA-TATTATAGTA
* *
14599394 TGTTGCTATTATATTACTATTGTTA-TA
1 T-AT--TATTATATTA-TATT-ATAGTA
*
14599421 TTAGTATTATATTATATTATAGTA
1 -TATTATTATATTATATTATAGTA
14599445 TATTATTATATTATATTA
1 TATTATTATATTATATTA
14599463 GGTTATCATA
Statistics
Matches: 94, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
22 18 0.19
23 20 0.21
24 27 0.29
25 10 0.11
26 1 0.01
27 16 0.17
28 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (23 bp):
TATTATTATATTATATTATAGTA
Found at i:14601586 original size:13 final size:13
Alignment explanation
Indices: 14601518--14601586 Score: 52
Period size: 13 Copynumber: 5.4 Consensus size: 13
14601508 TCCTTTTTCA
*
14601518 TTTTCATTTTATT
1 TTTTTATTTTATT
* *
14601531 TTCTGATTTTA-T
1 TTTTTATTTTATT
*
14601543 TTTTTATTTCATT
1 TTTTTATTTTATT
* *
14601556 ATTTTAAGTTT-TT
1 -TTTTTATTTTATT
*
14601569 ATTTTATTTTATT
1 TTTTTATTTTATT
14601582 TTTTT
1 TTTTT
14601587 GGTTTTTATT
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
12 16 0.39
13 18 0.44
14 7 0.17
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.75
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:14601586 original size:26 final size:25
Alignment explanation
Indices: 14601544--14601606 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 25
14601534 TGATTTTATT
14601544 TTTTATTTCATTATTTTAAGTTTTTA
1 TTTTATTTCATTATTTT-AGTTTTTA
* * *
14601570 TTTTATTTTATTTTTTTGGTTTTTA
1 TTTTATTTCATTATTTTAGTTTTTA
14601595 -TTTATTTGCATT
1 TTTTATTT-CATT
14601607 TAGTATTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 7 0.22
25 10 0.31
26 15 0.47
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.73
Consensus pattern (25 bp):
TTTTATTTCATTATTTTAGTTTTTA
Found at i:14601607 original size:25 final size:25
Alignment explanation
Indices: 14601544--14601607 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
14601534 TGATTTTATT
14601544 TTTTATTTCATTATTTTAAGTTTTTA
1 TTTTATTTCATT-TTTTAAGTTTTTA
* **
14601570 TTTTATTTTATTTTTTTGGTTTTTA
1 TTTTATTTCATTTTTTAAGTTTTTA
14601595 -TTTATTTGCATTT
1 TTTTATTT-CATTT
14601608 AGTATTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 7 0.21
25 15 0.45
26 11 0.33
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.73
Consensus pattern (25 bp):
TTTTATTTCATTTTTTAAGTTTTTA
Found at i:14606155 original size:57 final size:59
Alignment explanation
Indices: 14606059--14606172 Score: 160
Period size: 57 Copynumber: 1.9 Consensus size: 59
14606049 GAAGAAAATG
* * *
14606059 AAAAAAAGAAAAAGAAAAATGAAAGAAAAATTGATGGGGCAAAATGCCAATGTGCTCCAC
1 AAAAAAAAAAAAAGAAAAA-GAAAGAAAAATTAATGGGGCAAAATGCCAAAGTGCTCCAC
* *
14606119 AAAAAAAAAAAAAGAAGAA-AAAG-AAAATTAATGGGGCAAAATGTCAAAGTGCTC
1 AAAAAAAAAAAAAGAAAAAGAAAGAAAAATTAATGGGGCAAAATGCCAAAGTGCTC
14606173 TACATGAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 28 0.57
58 4 0.08
60 17 0.35
ACGTcount: A:0.58, C:0.10, G:0.19, T:0.13
Consensus pattern (59 bp):
AAAAAAAAAAAAAGAAAAAGAAAGAAAAATTAATGGGGCAAAATGCCAAAGTGCTCCAC
Found at i:14606442 original size:8 final size:8
Alignment explanation
Indices: 14606429--14606485 Score: 64
Period size: 8 Copynumber: 7.2 Consensus size: 8
14606419 TGAGGTGTTA
*
14606429 AAAAAAAC
1 AAAAAAAG
14606437 AAAAAAAG
1 AAAAAAAG
**
14606445 GTAAAAA-
1 AAAAAAAG
14606452 AAAAAAAG
1 AAAAAAAG
14606460 AAAAAAAG
1 AAAAAAAG
14606468 AAAAAAA-
1 AAAAAAAG
14606475 AAGAAAAAG
1 AA-AAAAAG
14606484 AA
1 AA
14606486 GAGGAAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
7 7 0.17
8 32 0.78
9 2 0.05
ACGTcount: A:0.86, C:0.02, G:0.11, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:14606443 original size:10 final size:10
Alignment explanation
Indices: 14606428--14606482 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
14606418 ATGAGGTGTT
*
14606428 AAAAAAAA-C
1 AAAAAAAAGA
*
14606437 AAAAAAAGGTA
1 AAAAAAAAG-A
*
14606448 AAAAAAAAAA
1 AAAAAAAAGA
14606458 AGAAAAAAAGA
1 A-AAAAAAAGA
14606469 AAAAAAAAGA
1 AAAAAAAAGA
14606479 AAAA
1 AAAA
14606483 GAAGAGGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
9 7 0.18
10 15 0.39
11 16 0.42
ACGTcount: A:0.87, C:0.02, G:0.09, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:14606465 original size:24 final size:23
Alignment explanation
Indices: 14606428--14606485 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
14606418 ATGAGGTGTT
* **
14606428 AAAAAAAACAAAAAAAGGTAAAA
1 AAAAAAAAGAAAAAAAGAAAAAA
14606451 AAAAAAAAGAAAAAAAGAAAAAA
1 AAAAAAAAGAAAAAAAGAAAAAA
14606474 AAAGAAAAAGAA
1 AAA-AAAAAGAA
14606486 GAGGAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 23 0.74
24 8 0.26
ACGTcount: A:0.86, C:0.02, G:0.10, T:0.02
Consensus pattern (23 bp):
AAAAAAAAGAAAAAAAGAAAAAA
Found at i:14606471 original size:18 final size:19
Alignment explanation
Indices: 14606450--14606487 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
14606440 AAAAGGTAAA
14606450 AAAAAAAAAGAAAAA-AAG
1 AAAAAAAAAGAAAAAGAAG
14606468 AAAAAAAAAGAAAAAGAAG
1 AAAAAAAAAGAAAAAGAAG
14606487 A
1 A
14606488 GGAAAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAGAAG
Found at i:14606471 original size:19 final size:20
Alignment explanation
Indices: 14606428--14606487 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 20
14606418 ATGAGGTGTT
14606428 AAAAAAAACAA-AAAAAGGTAA-
1 AAAAAAAA-AAGAAAAA-G-AAG
14606449 AAAAAAAAAAGAAAAA-AAG
1 AAAAAAAAAAGAAAAAGAAG
14606468 -AAAAAAAAAGAAAAAGAAG
1 AAAAAAAAAAGAAAAAGAAG
14606487 A
1 A
14606488 GGAAAAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
18 17 0.49
19 3 0.09
20 2 0.06
21 13 0.37
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAAGAAAAAGAAG
Found at i:14606481 original size:23 final size:23
Alignment explanation
Indices: 14606428--14606494 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 23
14606418 ATGAGGTGTT
*
14606428 AAAAAAAACAAAAAAAGGTAAAA
1 AAAAAAAACAAAAAAAGGAAAAA
*
14606451 AAAAAAAAGAAAAAAA-GAAAAA
1 AAAAAAAACAAAAAAAGGAAAAA
* * *
14606473 AAAAGAAA-AAGAAGAGGAAAAA
1 AAAAAAAACAAAAAAAGGAAAAA
14606495 TGAGACTTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
21 5 0.13
22 18 0.47
23 15 0.39
ACGTcount: A:0.84, C:0.01, G:0.13, T:0.01
Consensus pattern (23 bp):
AAAAAAAACAAAAAAAGGAAAAA
Found at i:14607692 original size:22 final size:22
Alignment explanation
Indices: 14607656--14607711 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
14607646 TGATTTTCAT
14607656 TATTAGTATTA-TTTTGGTATTA
1 TATTA-TATTATTTTTGGTATTA
** *
14607678 TATTATATTATTTTTTTTATTG
1 TATTATATTATTTTTGGTATTA
*
14607700 TAGTATATTATT
1 TATTATATTATT
14607712 ATTATTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (22 bp):
TATTATATTATTTTTGGTATTA
Found at i:14608247 original size:20 final size:20
Alignment explanation
Indices: 14608200--14608250 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
14608190 GTTGATTTGG
* *
14608200 AGTTTTTAGGTTTAGATTTA
1 AGTTTTTGGGATTAGATTTA
* *
14608220 AATTTTTGGGATTAGGTTTA
1 AGTTTTTGGGATTAGATTTA
14608240 AGTTTTTGGGA
1 AGTTTTTGGGA
14608251 GTTTTCTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (20 bp):
AGTTTTTGGGATTAGATTTA
Found at i:14608376 original size:19 final size:19
Alignment explanation
Indices: 14608352--14608389 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14608342 TTTTTTAGTG
14608352 GAATTTTCCAGCGGGATTT
1 GAATTTTCCAGCGGGATTT
*
14608371 GAATTTTCCAGTGGGATTT
1 GAATTTTCCAGCGGGATTT
14608390 CAGTGACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.39
Consensus pattern (19 bp):
GAATTTTCCAGCGGGATTT
Found at i:14608735 original size:21 final size:20
Alignment explanation
Indices: 14608711--14608771 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
14608701 ATTTTTTTTG
14608711 TTTTATTTTTTTATTTCATT
1 TTTTATTTTTTTATTTCATT
** *
14608731 ATTTTAAGTTTTTATTTTATT
1 -TTTTATTTTTTTATTTCATT
14608752 TTTT-TTGTTTTTATTT-ATT
1 TTTTATT-TTTTTATTTCATT
14608771 T
1 T
14608772 GCATTTAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.12
20 13 0.38
21 17 0.50
ACGTcount: A:0.16, C:0.02, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTTATTTTTTTATTTCATT
Found at i:14608855 original size:11 final size:11
Alignment explanation
Indices: 14608839--14608863 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14608829 ATGAAAAGAT
14608839 TAATAAATAAA
1 TAATAAATAAA
14608850 TAATAAATAAA
1 TAATAAATAAA
14608861 TAA
1 TAA
14608864 ACCTTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:14608940 original size:16 final size:18
Alignment explanation
Indices: 14608909--14608945 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14608899 TAAAAAATAA
*
14608909 AAAAATCTTTTTC-AAAT
1 AAAAATCTTTTACAAAAT
14608926 AAAAATC-TTTACAAAAT
1 AAAAATCTTTTACAAAAT
14608943 AAA
1 AAA
14608946 TTCATGACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATCTTTTACAAAAT
Found at i:14620886 original size:52 final size:52
Alignment explanation
Indices: 14620830--14620929 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
14620820 AAAAGAAGCC
*
14620830 TTTT-TCAAAATGAAGAATTTTTTTAAAAGTATTGAGCCTCTACCTAGAGAAGT
1 TTTTGTCAAAATG-AG-ATTTTTTAAAAAGTATTGAGCCTCTACCTAGAGAAGT
* * *
14620883 TTTTGTGAAAATGAGATTTTTTAAAAATTGTTGAGCCTCTACCTAGA
1 TTTTGTCAAAATGAGATTTTTTAAAAAGTATTGAGCCTCTACCTAGA
14620930 TGAGCATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
52 29 0.69
53 6 0.14
54 7 0.17
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (52 bp):
TTTTGTCAAAATGAGATTTTTTAAAAAGTATTGAGCCTCTACCTAGAGAAGT
Found at i:14620990 original size:50 final size:50
Alignment explanation
Indices: 14620936--14621030 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
14620926 TAGATGAGCA
* *
14620936 TTTTTTC-AGATAAGAA-TTTTAAAGTTGTTAAACCTTTGCTTAGATATAC
1 TTTTTTCAAGATAA-AATTTTTAAAGTCGTTAAACCTCTGCTTAGATATAC
* *
14620985 TTTTTTCAAGATAAAATTTTTAAAGTCGTTAAGCCTCTGTTTAGAT
1 TTTTTTCAAGATAAAATTTTTAAAGTCGTTAAACCTCTGCTTAGAT
14621031 GAGTCTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 9 0.22
50 31 0.77
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (50 bp):
TTTTTTCAAGATAAAATTTTTAAAGTCGTTAAACCTCTGCTTAGATATAC
Found at i:14621045 original size:42 final size:42
Alignment explanation
Indices: 14620998--14621093 Score: 147
Period size: 43 Copynumber: 2.3 Consensus size: 42
14620988 TTTCAAGATA
* *
14620998 AAATTTTTAAAGTCGTTAAGCCTCTGTTTAGATGAGTCTTTT
1 AAATTTTTAAAGTAGTTAAGCCTCTGTTTAGATGAGCCTTTT
* *
14621040 AAATTTTCAAGAGTAGTTAAGCTTCTGTTTAGATGAGCCTTTT
1 AAATTTTTAA-AGTAGTTAAGCCTCTGTTTAGATGAGCCTTTT
14621083 AAATTTTTAAA
1 AAATTTTTAAA
14621094 AAAGTTATCG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 10 0.21
43 38 0.79
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (42 bp):
AAATTTTTAAAGTAGTTAAGCCTCTGTTTAGATGAGCCTTTT
Found at i:14622364 original size:18 final size:18
Alignment explanation
Indices: 14622338--14622375 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14622328 CCTAATAAAA
*
14622338 AATATAAAAT-AATGAATG
1 AATAAAAAATGAAT-AATG
14622356 AATAAAAAATGAATAATG
1 AATAAAAAATGAATAATG
14622374 AA
1 AA
14622376 AAGCAAAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24
Consensus pattern (18 bp):
AATAAAAAATGAATAATG
Found at i:14622555 original size:27 final size:27
Alignment explanation
Indices: 14622517--14622568 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
14622507 TTTTAATTTG
* *
14622517 AAAAATGGAAAATAACAAAAAATTAGT
1 AAAAATGGAAAAAAAAAAAAAATTAGT
*
14622544 AAAAATGTAAAAAAAAAAAAAATTA
1 AAAAATGGAAAAAAAAAAAAAATTA
14622569 TTTGATGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (27 bp):
AAAAATGGAAAAAAAAAAAAAATTAGT
Found at i:14623096 original size:14 final size:14
Alignment explanation
Indices: 14623079--14623106 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14623069 AAATAATGCC
14623079 TAAGAAATCTCTAG
1 TAAGAAATCTCTAG
14623093 TAAGAAATCTCTAG
1 TAAGAAATCTCTAG
14623107 GTGACAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TAAGAAATCTCTAG
Found at i:14623445 original size:10 final size:10
Alignment explanation
Indices: 14623430--14623486 Score: 59
Period size: 10 Copynumber: 6.1 Consensus size: 10
14623420 AGAATTATAT
14623430 TTTTAATAAA
1 TTTTAATAAA
*
14623440 TTTTAATTAA
1 TTTTAATAAA
14623450 TTTT-A-AAA
1 TTTTAATAAA
*
14623458 TTTTATTAAA
1 TTTTAATAAA
*
14623468 --ATAATAAA
1 TTTTAATAAA
14623476 TTTTAATAAA
1 TTTTAATAAA
14623486 T
1 T
14623487 GTCTAATCGC
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
8 12 0.32
9 1 0.03
10 24 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:14623476 original size:18 final size:18
Alignment explanation
Indices: 14623433--14623485 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
14623423 ATTATATTTT
**
14623433 TAATAAATTTTAATTAATT
1 TAATAAATTTT-ATTAAAA
*
14623452 TTA-AAATTTTATTAAAA
1 TAATAAATTTTATTAAAA
*
14623469 TAATAAATTTTAATAAA
1 TAATAAATTTTATTAAA
14623486 TGTCTAATCG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
17 7 0.25
18 19 0.68
19 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATAAATTTTATTAAAA
Found at i:14624816 original size:26 final size:27
Alignment explanation
Indices: 14624781--14624838 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
14624771 TTTATCAAAT
*
14624781 AATATTTTTTAATAAATTATTTAAATT-A
1 AATA-TTTTGAAT-AATTATTTAAATTGA
*
14624809 AATATTTTGGATAATTATTTAAATTGA
1 AATATTTTGAATAATTATTTAAATTGA
14624836 AAT
1 AAT
14624839 CAATATCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 13 0.48
27 10 0.37
28 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (27 bp):
AATATTTTGAATAATTATTTAAATTGA
Found at i:14625776 original size:18 final size:18
Alignment explanation
Indices: 14625750--14625796 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
14625740 GAAGTATGTC
14625750 AAAAA-TAATAACTA-ATA
1 AAAAATTAATAACTACA-A
*
14625767 AAAAATTAATAATTACAA
1 AAAAATTAATAACTACAA
*
14625785 CAAAATTAATAA
1 AAAAATTAATAA
14625797 TTGTGATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 5 0.19
18 20 0.77
19 1 0.04
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAAATTAATAACTACAA
Found at i:14628376 original size:37 final size:38
Alignment explanation
Indices: 14628334--14628411 Score: 122
Period size: 37 Copynumber: 2.0 Consensus size: 38
14628324 ACGTCTATAT
14628334 AAAATTAAAAATAAAAATTATA-TATTTATTAAACTTA
1 AAAATTAAAAATAAAAATTATACTATTTATTAAACTTA
*
14628371 AAAATTAAAAATAAAAATTATAGCTTTTTTATTAAACTTA
1 AAAATTAAAAATAAAAATTATA-C-TATTTATTAAACTTA
14628411 A
1 A
14628412 TTTTTATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
37 22 0.59
40 15 0.41
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (38 bp):
AAAATTAAAAATAAAAATTATACTATTTATTAAACTTA
Found at i:14628494 original size:41 final size:40
Alignment explanation
Indices: 14628401--14628495 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
14628391 TAGCTTTTTT
*
14628401 ATTAAACT-TAATTTTTATTTTTAATTTTTTAGTTTAATAA
1 ATTAAA-TATAATTTTTATTTTTAATTTTTTAGTGTAATAA
* *
14628441 AATATATATAATTTTTATTTTTAATTTATATATA-TGT-ATAA
1 ATTAAATATAATTTTTATTTTTAATTT-T-T-TAGTGTAATAA
14628482 ATTAAATATAATTT
1 ATTAAATATAATTT
14628496 CATTAAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
39 1 0.02
40 23 0.50
41 17 0.37
42 3 0.07
43 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (40 bp):
ATTAAATATAATTTTTATTTTTAATTTTTTAGTGTAATAA
Found at i:14628914 original size:2 final size:2
Alignment explanation
Indices: 14628907--14628939 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14628897 TATATTGTAT
14628907 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14628940 TGAAATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14631886 original size:15 final size:16
Alignment explanation
Indices: 14631866--14631895 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14631856 TATTTATTTG
14631866 TTATAT-TTTATTTTC
1 TTATATGTTTATTTTC
14631881 TTATATGTTTATTTT
1 TTATATGTTTATTTT
14631896 GAATTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (16 bp):
TTATATGTTTATTTTC
Found at i:14634282 original size:39 final size:40
Alignment explanation
Indices: 14634225--14634306 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 40
14634215 ATATTTTGAT
* *
14634225 ATTTTTAGGTTTTTCATCAATACCTAGAAAGCTTCCAACA
1 ATTTTTAGGTTTTCCATCAATACATAGAAAGCTTCCAACA
*
14634265 ATTTTT-GGTTTTCCATCAATACATAGAAAGTTTCCAACA
1 ATTTTTAGGTTTTCCATCAATACATAGAAAGCTTCCAACA
14634304 ATT
1 ATT
14634307 ATTTCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 33 0.85
40 6 0.15
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (40 bp):
ATTTTTAGGTTTTCCATCAATACATAGAAAGCTTCCAACA
Found at i:14636217 original size:22 final size:22
Alignment explanation
Indices: 14636189--14636235 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
14636179 AACATAATTT
14636189 AATTGAATTAAAACTTGAAAAG
1 AATTGAATTAAAACTTGAAAAG
14636211 AATTGAATTAAAACTTGAAAAG
1 AATTGAATTAAAACTTGAAAAG
14636233 AAT
1 AAT
14636236 GTGCATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.55, C:0.04, G:0.13, T:0.28
Consensus pattern (22 bp):
AATTGAATTAAAACTTGAAAAG
Found at i:14640940 original size:18 final size:18
Alignment explanation
Indices: 14640919--14640971 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
14640909 AGATTTTTTT
*
14640919 TTATCTATTTATTTATTA
1 TTATTTATTTATTTATTA
* * **
14640937 TTATTTATTAAATTAAAA
1 TTATTTATTTATTTATTA
14640955 TTATTTATTTATTTATT
1 TTATTTATTTATTTATT
14640972 TGAGTAAGCA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATTTATTTATTTATTA
Found at i:14641093 original size:69 final size:67
Alignment explanation
Indices: 14641013--14641539 Score: 493
Period size: 69 Copynumber: 7.8 Consensus size: 67
14641003 CTCTTAAAAT
* * * *
14641013 AAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTTAAAATAATATTTTGATAGAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-A-TTTGATAAAAA
14641078 TTTC
64 TTTC
* * * *
14641082 AAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAA-AT-AAAAAAATT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAATT
14641145 TC
66 TC
*
14641147 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAACACTTTGATAAAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-A-TTTGATAAAAA
14641212 TTTC
64 TTTC
* * *
14641216 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTTGAAAATACAA--T-AAAAAAAT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATA-AATTTGATAAAAAT
14641278 TTC
65 TTC
* * * * **
14641281 GAAAAAT-TTTTTGGAGGAAAAGTTAAAAGTATAAATTTTCCTTGAAAAGAAAAAT-A-AAAAAT
1 AAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAAT
14641343 TTC
65 TTC
* * * **
14641346 AAAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATTGAAAACAAA--AAATAAA
1 ----AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAA
* *
14641409 GATTTAAAAA
62 AATTT----C
* * * ** *
14641419 AAAAAAGCATTTTTTAAGGAAAAGTTGAAAGTATCAATTTCCCTTGAAAATAAA--AAATAAAGA
1 AAAAAA-TA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAA
14641482 TTTC
64 TTTC
* * * *
14641486 AAAAAAAGGATTTTTAAGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAA
1 -AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA
14641540 AACCATAAAA
Statistics
Matches: 393, Mismatches: 43, Indels: 46
0.82 0.09 0.10
Matches are distributed among these distances:
64 7 0.02
65 114 0.29
66 5 0.01
67 41 0.10
68 11 0.03
69 157 0.40
70 7 0.02
71 51 0.13
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (67 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAATT
TC
Found at i:14641110 original size:25 final size:25
Alignment explanation
Indices: 14641057--14641112 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
14641047 ATTTTTCTTT
*
14641057 AAAATAATATTTTGATAGAAATTTC
1 AAAATAATATTTTGATAGAAAGTTC
*
14641082 AAAA-AATATTTTTGA-AGAAAAGTTG
1 AAAATAATA-TTTTGATAG-AAAGTTC
14641107 AAAATA
1 AAAATA
14641113 TCAATTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 6 0.23
25 19 0.73
26 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.11, T:0.34
Consensus pattern (25 bp):
AAAATAATATTTTGATAGAAAGTTC
Found at i:14641158 original size:134 final size:133
Alignment explanation
Indices: 14641013--14641540 Score: 563
Period size: 134 Copynumber: 3.9 Consensus size: 133
14641003 CTCTTAAAAT
* * * * *
14641013 AAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTTAAAATAATATTTTGATAGAAA
1 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-A-TTTGATAAAAA
14641078 TTTC-AAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAAATAAAAAA
64 TTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAAATAAAAAA
14641142 ATTTC
129 ATTTC
14641147 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAACACTTTGATAAAAA
1 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-A-TTTGATAAAAA
* * * * *
14641212 TTTC-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTTGAAAATACAATAAAAAA
64 TTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAAATAAAAAA
14641276 ATTTC
129 ATTTC
* * * * * **
14641281 GAAAAA-TTTTTTGGAGGAAAAGTTAAAAGTATAAATTTTCCTTGAAAAGAAAAAT-A-AAAAAT
1 AAAAAACATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAAT
* * *
14641343 TTCAAAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATTGAAAACAAAA-AATA
65 TTC---AAAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAAATAA-A
* *
14641407 AAGATTTAAAAA
126 AAAATTT----C
* * ** *
14641419 AAAAAAGCATTTTTTAAGGAAAAGTTGAAAGTATCAATTTCCCTTGAAAATAAA--AAATAAAGA
1 AAAAAA-CA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAA
* *
14641482 TTTCAAAAAAAGGATTTTT-AAGGAAAAGTT-AAAAGTATCAATTTTTCTTGAAAATAAAA
64 TTTCAAAAAAA-TATTTTTGAA-GAAAAGTTGAAAA-TATCAATTTTCCTTGAAAATAAAA
14641541 ACCATAAAAT
Statistics
Matches: 336, Mismatches: 40, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
130 9 0.03
131 1 0.00
132 1 0.00
133 8 0.02
134 217 0.65
137 12 0.04
138 40 0.12
139 1 0.00
140 42 0.12
141 5 0.01
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (133 bp):
AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTGATAAAAATT
TCAAAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTCCTTGAAAATAAAATAAAAAAAT
TTC
Found at i:14641445 original size:71 final size:69
Alignment explanation
Indices: 14641295--14641541 Score: 306
Period size: 71 Copynumber: 3.6 Consensus size: 69
14641285 AATTTTTTGG
* * * *
14641295 AGGAAAAGTTAAAAGTATAAATTTTCCTTGAAAA-GAAAAATAAAAAATTTCAAAAAAAAAA-TA
1 AGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAAAAAT-AAAGATTT-AAAAAAAAAAGCA
*
14641358 TTTTTG
64 TTTTTA
* *
14641364 AGGAAAAGTTGAAAA-TATCAATTTTCATTGAAAACAAAAAATAAAGATTTAAAAAAAAAAAGCA
1 AGGAAAAGTT-AAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGATTT-AAAAAAAAAAGCA
14641428 TTTTTTA
64 -TTTTTA
* * * *
14641435 AGGAAAAGTTGAAAGTATCAATTTCCCTTGAAAATAAAAAATAAAGATTT--CAAAAAAAGGATT
1 AGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGATTTAAAAAAAAAAGCATT
14641498 TTTA
66 TTTA
*
14641502 AGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAAAA
1 AGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAAAA
14641542 CCATAAAATG
Statistics
Matches: 157, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
67 43 0.27
68 9 0.06
69 44 0.28
70 14 0.09
71 47 0.30
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (69 bp):
AGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGATTTAAAAAAAAAAGCATT
TTTA
Found at i:14650274 original size:16 final size:16
Alignment explanation
Indices: 14650253--14650285 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14650243 ATACGACATC
14650253 ATTTATGTAACTTAAA
1 ATTTATGTAACTTAAA
14650269 ATTTATGTAACTTAAA
1 ATTTATGTAACTTAAA
14650285 A
1 A
14650286 AGCAATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTATGTAACTTAAA
Found at i:14652250 original size:58 final size:57
Alignment explanation
Indices: 14652153--14652383 Score: 212
Period size: 58 Copynumber: 3.8 Consensus size: 57
14652143 TTTCTTAACA
* * * *
14652153 AAAAAAAAAAGAGCTTAAATTGAAAA-CTCGTAAAGGGTGATTTGAGTTTAAAAGAAAG
1 AAAAAAAAAAGAGCTCAAATTGAAAACCT-GAAAAAGGTG-TTTGAGTTTAAAAAAAAG
14652211 AAAAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGGTGATTTGAGTTTAAAAAAAAAAAG
1 AAAAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGGTG-TTTGAGTTT---AAAAAAAAG
* * * * ** * *
14652272 AGAAAAAAAAGGGCTTAAATTGAAAACCTGTAAAGAGCAGTTTGAGTTAAAAAAATTAAAAA
1 AAAAAAAAAAGAGCTCAAATTGAAAACCTG-AAAAAGGTGTTTGAGTT--TAAAA--AAAAG
*
14652334 AATGAAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTGTTTGAGTT
1 AA--AAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGG-TGTTTGAGTT
14652384 CCAAAAATGG
Statistics
Matches: 142, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
58 43 0.30
59 2 0.01
60 4 0.03
61 43 0.30
62 11 0.08
63 4 0.03
64 35 0.25
ACGTcount: A:0.53, C:0.07, G:0.19, T:0.21
Consensus pattern (57 bp):
AAAAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGGTGTTTGAGTTTAAAAAAAAG
Found at i:14652344 original size:64 final size:60
Alignment explanation
Indices: 14652155--14652383 Score: 241
Period size: 61 Copynumber: 3.8 Consensus size: 60
14652145 TCTTAACAAA
* * * * * *
14652155 AAAAAAAAGAGCTTAAATTGAAAA-CTCGTAAAGGGTGATTTGAGTT--TAAAAGAAAGAA-
1 AAAAAAAAGAGCTCAAATTGAAAACCT-GTAAAAGCTG-TTTGAGTTAAAAAAAAAAAAAAG
* * * *
14652213 AAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGGTGATTTGAGTTTAAAAAAAAAAAGAG
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGCTG-TTTGAGTTAAAAAAAAAAAAAAG
* * *
14652274 AAAAAAAAGGGCTTAAATTGAAAACCTGTAAAGAGCAGTTTGAGTTAAAAAAATTAAAAAAATG
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAA-AGCTGTTTGAGTTAAAAAAA--AAAAAAA-G
14652338 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTGTTTGAGTT
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAA-GCTGTTTGAGTT
14652384 CCAAAAATGG
Statistics
Matches: 145, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
58 40 0.28
59 2 0.01
60 8 0.06
61 43 0.30
62 3 0.02
63 7 0.05
64 42 0.29
ACGTcount: A:0.53, C:0.07, G:0.19, T:0.21
Consensus pattern (60 bp):
AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGCTGTTTGAGTTAAAAAAAAAAAAAAG
Found at i:14652391 original size:64 final size:62
Alignment explanation
Indices: 14652155--14652383 Score: 235
Period size: 64 Copynumber: 3.7 Consensus size: 62
14652145 TCTTAACAAA
* * * * *
14652155 AAAAAAAAGAGCTTAAATTGAAAA-CTCGT-AAAGGGTGATTTGAGTT---TAA-AAGAAAGAA
1 AAAAAAAAGAGCTCAAATTGAAAACCT-GTAAAAGGCTG-TTTGAGTTAAAAAATAAAAAAGAG
* *
14652213 AAAAAAAAGAGCTCAAATTGAAAACCTGAAAAAGG-TGATTTGAGTTTAAAAA-AAAAAAGAG
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTG-TTTGAGTTAAAAAATAAAAAAGAG
* * *
14652274 AAAAAAAAGGGCTTAAATTGAAAACCTGT-AAAGAGCAGTTTGAGTTAAAAAAATTAAAAAA-AT
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAG-GCTGTTTGAGTT-AAAAAA-TAAAAAAGA-
14652337 G
62 G
14652338 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTGTTTGAGTT
1 AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTGTTTGAGTT
14652384 CCAAAAATGG
Statistics
Matches: 146, Mismatches: 13, Indels: 18
0.82 0.07 0.10
Matches are distributed among these distances:
58 35 0.24
59 7 0.05
60 4 0.03
61 44 0.30
62 6 0.04
63 1 0.01
64 45 0.31
65 4 0.03
ACGTcount: A:0.53, C:0.07, G:0.19, T:0.21
Consensus pattern (62 bp):
AAAAAAAAGAGCTCAAATTGAAAACCTGTAAAAGGCTGTTTGAGTTAAAAAATAAAAAAGAG
Done.