Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 68 of 117
Found at i:14653336 original size:79 final size:78
Alignment explanation
Indices: 14653197--14653401 Score: 250
Period size: 79 Copynumber: 2.6 Consensus size: 78
14653187 GATTATCCAT
* * * * *
14653197 TTTAGGCTTCAGTTCAGTCCAAGCCTTT-TAGTTTGGATTTTGACTTTTGTGAAATTCTTCTTAG
1 TTTAAGCTTCAGTTCAGTCCAAGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTAG
*
14653261 TCTAAGTTATTCA
66 TCTAAGTCATTCA
* * *
14653274 TTTCAAGCTTCAATTCAGTTCAGGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTA
1 TTT-AAGCTTCAGTTCAGTCCAAGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTA
*
14653339 GTCTAAGTCATTCG
65 GTCTAAGTCATTCA
* * * *
14653353 TTTTAGACTTCAGTTCAATCCAAGTCATTCTATTTTTGGATTTCGACTT
1 TTTAAG-CTTCAGTTCAGTCCAAGTCTTTCTA-TTTTGGATTTTGACTT
14653402 ATGCCAGATC
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
77 3 0.03
78 22 0.21
79 67 0.63
80 15 0.14
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.47
Consensus pattern (78 bp):
TTTAAGCTTCAGTTCAGTCCAAGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTAG
TCTAAGTCATTCA
Found at i:14653592 original size:212 final size:212
Alignment explanation
Indices: 14653210--14653643 Score: 591
Period size: 212 Copynumber: 2.0 Consensus size: 212
14653200 AGGCTTCAGT
* * * *
14653210 TCAGTCCAAGCCTTTTAGTTTGGATTTTGACTTTTGTGAAATTCTTCTTAGTCTAAGTTATTCAT
1 TCAGTCCAAGCCTTTCAGTTTAGATTTTGACTTTTGTCAAATTCTTCTTAGTCTAAGTCATTCAT
*
14653275 TTCAAGCTTCAATTCAGTTCAGGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTAG
66 TTCAAGCTTCAATTCAGTCCAGGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTAG
* * * * *
14653340 TCTAAGTCATTCGTTTTAGACTTCAGTTCAATCCAAGTCATTCTATTTTTGGATTTCGACTTATG
131 TCTAAATCATTCATTTCAAACTTCAGTTCAATCCAAGTCATTCTATTTTTGGATTTCGACCTATG
14653405 CCAGATCATTCTTCGGC
196 CCAGATCATTCTTCGGC
* * * *
14653422 TCAGTCCAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAA-TCTTTTTAGTCTAAGTCATTCG
1 TCAGTCCAAGCCTTTCAG-TTTAGATTTTGACTTTTGTCAAATTCTTCTTAGTCTAAGTCATTCA
* ** * *
14653486 TTTCAGGCTTCGGTTCAGTCCAGGTCTTTCTGTTTTTGATTTTGACTTTTGTCAAATCCTTCTTA
65 TTTCAAGCTTCAATTCAGTCCAGGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTA
* * * * * *
14653551 GTTTAAATTATTCATTTCAAACTTTAGTTTAATCTAAGTCATTCTATTTTTGGATTTTGACCTAT
130 GTCTAAATCATTCATTTCAAACTTCAGTTCAATCCAAGTCATTCTATTTTTGGATTTCGACCTAT
* **
14653616 GCCAGATCCTTCTTTAGC
195 GCCAGATCATTCTTCGGC
*
14653634 TTAGTCCAAG
1 TCAGTCCAAG
14653644 TTATTCATTT
Statistics
Matches: 191, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
212 170 0.89
213 21 0.11
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.46
Consensus pattern (212 bp):
TCAGTCCAAGCCTTTCAGTTTAGATTTTGACTTTTGTCAAATTCTTCTTAGTCTAAGTCATTCAT
TTCAAGCTTCAATTCAGTCCAGGTCTTTCTATTTTGGATTTTGACTTTTGTCAAATCCTTCTTAG
TCTAAATCATTCATTTCAAACTTCAGTTCAATCCAAGTCATTCTATTTTTGGATTTCGACCTATG
CCAGATCATTCTTCGGC
Found at i:14653764 original size:79 final size:79
Alignment explanation
Indices: 14653422--14653872 Score: 345
Period size: 79 Copynumber: 5.6 Consensus size: 79
14653412 ATTCTTCGGC
* * * *
14653422 TCAGTCCAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAAT-CTTTTTAGTCTAAGTCATTCG
1 TCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAGTCATTCA
*
14653486 TTTCAGGCTTCGGT
66 TTTCAGGCTTTGGT
* * *
14653500 TCAGTCCAGGTCTTTCTGTTTTTGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAATTATTCA
1 TCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAGTCATTCA
** *
14653565 TTTCAAACTTTAGT
66 TTTCAGGCTTTGGT
* * * * * * * * * * *
14653579 TTAATCTAAGTCATTCTATTTTTGGATTTTGACCTATGCCAGATCCTTCTTTAGCTTAGTCCAAG
1 TCAGTCCAGGTCTTTCT-GTTTTAGATTTTGACTTTTGTCAAATCCTTC-TTAG-TT--T--AAG
* **
14653644 TTATTCATTT-AGG-TTTCGAC
59 TCATTCATTTCAGGCTTT-GGT
* * * * *
14653664 TCAGTACAGGTCTTT-TAGTTTTGGATTTTGAGTTTTGTCAAATCTTTCTTAGTTTAAGTCATTT
1 TCAGTCCAGGTCTTTCT-GTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAGTCATTC
*
14653728 GTTTCAGGCTTTGGT
65 ATTTCAGGCTTTGGT
* * * * *
14653743 TCAGTCTAGGTCTTTTTGTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTCAAATTATT-A
1 TCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAGTCATTCA
* * *
14653807 GTTTCAGACTTCGAT
66 -TTTCAGGCTTTGGT
* * * * * * * *
14653822 TCAATCCAGGTCATTCTATTTTTAAATTTTGACATATATCATATCCTTCTT
1 TCAGTCCAGGTCTTTCT-GTTTTAGATTTTGACTTTTGTCAAATCCTTCTT
14653873 TGACCTAGTC
Statistics
Matches: 291, Mismatches: 68, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
78 51 0.18
79 119 0.41
80 57 0.20
81 4 0.01
82 4 0.01
83 4 0.01
84 30 0.10
85 10 0.03
86 12 0.04
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.48
Consensus pattern (79 bp):
TCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCTTCTTAGTTTAAGTCATTCA
TTTCAGGCTTTGGT
Found at i:14653772 original size:243 final size:242
Alignment explanation
Indices: 14653416--14653893 Score: 674
Period size: 243 Copynumber: 2.0 Consensus size: 242
14653406 CAGATCATTC
* *
14653416 TTCGGCTCAGTCCAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAATCTTTTTAGTCTAAGTC
1 TTCGACTCAGTACAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAATCTTTTTAGTCTAAGTC
*
14653481 ATTCGTTTCAGGCTTCGGTTCAGTCCAGGTCTTTCTGTTTTTGATTTTGACTTTTGTCAAATCCT
66 ATTCGTTTCAGGCTTCGGTTCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCT
* * * **
14653546 TCTTAGTTTAAATTATTCA-TTTCAAACTTTAG-TTTAATCTAAGTCATTCTATTTTTGGATTTT
131 TCTTAGTTCAAATTATT-AGTTTCAAAC-TTAGATTCAATCCAAGTCATTCTATTTTTAAATTTT
* * * *
14653609 GACCTATGCCAGATCCTTCTTT-AGCTTAGTCCAAGTTATTCATTTAGGT
194 GACATATACCAGATCCTTCTTTGA-CCTAGTCCAAGGTATTCATTTAGGT
* * * *
14653658 TTCGACTCAGTACAGGTCTTTTAGTTTTGGATTTTGAGTTTTGTCAAATCTTTCTTAGTTTAAGT
1 TTCGACTCAGTACAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAATCTTT-TTAGTCTAAGT
* * * *
14653723 CATTTGTTTCAGGCTTTGGTTCAGTCTAGGTCTTTTTGTTTTAGATTTTGACTTTTGTCAAATCC
65 CATTCGTTTCAGGCTTCGGTTCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCC
* * *
14653788 TTCTTAGTTCAAATTATTAGTTTCAGACTTCGATTCAATCCAGGTCATTCTATTTTTAAATTTTG
130 TTCTTAGTTCAAATTATTAGTTTCAAACTTAGATTCAATCCAAGTCATTCTATTTTTAAATTTTG
* *
14653853 ACATATATCATATCCTTCTTTGACCTAGTCCAAGGTATTCA
195 ACATATACCAGATCCTTCTTTGACCTAGTCCAAGGTATTCA
14653894 CATCAAACAT
Statistics
Matches: 207, Mismatches: 25, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
242 52 0.25
243 154 0.74
244 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (242 bp):
TTCGACTCAGTACAGGTCTTTCAGTTTTAGATTTTGACTTTTGTCAAATCTTTTTAGTCTAAGTC
ATTCGTTTCAGGCTTCGGTTCAGTCCAGGTCTTTCTGTTTTAGATTTTGACTTTTGTCAAATCCT
TCTTAGTTCAAATTATTAGTTTCAAACTTAGATTCAATCCAAGTCATTCTATTTTTAAATTTTGA
CATATACCAGATCCTTCTTTGACCTAGTCCAAGGTATTCATTTAGGT
Found at i:14653968 original size:86 final size:85
Alignment explanation
Indices: 14653817--14653976 Score: 203
Period size: 86 Copynumber: 1.9 Consensus size: 85
14653807 GTTTCAGACT
* * *
14653817 TCGATTCAATCCAGGTCATTCTATTTTTAAATTTTGACATATATCATATCCTTCTTTGACCTAGT
1 TCGATTCAATCCAGGTCATTCTATTTTTAAATTTTGACATACATCAAATCCTTCTTCGACCTAGT
14653882 CCAAGGTATTCACATCAAACA
66 CCAA-GTATTCACATCAAACA
* * ** * * * * *
14653903 TCGATTCTATCCAGGTCATTTTATTTTTGGATTTTGACTTACGTCAAATCTTTCTTCGGCTTAGT
1 TCGATTCAATCCAGGTCATTCTATTTTTAAATTTTGACATACATCAAATCCTTCTTCGACCTAGT
14653968 CCAAGTATT
66 CCAAGTATT
14653977 TGTTTCATTC
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
85 5 0.08
86 57 0.92
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.42
Consensus pattern (85 bp):
TCGATTCAATCCAGGTCATTCTATTTTTAAATTTTGACATACATCAAATCCTTCTTCGACCTAGT
CCAAGTATTCACATCAAACA
Found at i:14655174 original size:18 final size:18
Alignment explanation
Indices: 14655148--14655200 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
14655138 TTTTTCTTTT
*
14655148 TTATCTATTTATTTATTA
1 TTATTTATTTATTTATTA
* * *
14655166 TTATTTATTAAATTGA-AA
1 TTATTTATT-TATTTATTA
14655184 TTATTTATTTATTTATT
1 TTATTTATTTATTTATT
14655201 TGAGTAAGCA
Statistics
Matches: 26, Mismatches: 7, Indels: 4
0.70 0.19 0.11
Matches are distributed among these distances:
17 4 0.15
18 18 0.69
19 4 0.15
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTATTTATTTATTTATTA
Found at i:14655323 original size:25 final size:25
Alignment explanation
Indices: 14655286--14655333 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14655276 ATTTTTCTTT
* *
14655286 AAAAGAATATTTTGATAAAAATTTC
1 AAAAGAATATTTTAAGAAAAATTTC
14655311 AAAA-AATATTTTTAAGAAAAATT
1 AAAAGAATA-TTTTAAGAAAAATT
14655334 GAAAGTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (25 bp):
AAAAGAATATTTTAAGAAAAATTTC
Found at i:14655386 original size:133 final size:133
Alignment explanation
Indices: 14655242--14655940 Score: 629
Period size: 133 Copynumber: 5.3 Consensus size: 133
14655232 CTCTTAAAAT
* * * * *
14655242 AAAAAATATTTTTGAGAAAAAATTGAAAGTATTAATTTTTCTTTAAAAGAATATTTTGATAAAAA
1 AAAAAACATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAATTTTGATAAAAA
14655307 TTTCAAAAAATATTTTTAAGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAAAAT
66 TTTCAAAAAATATTTTTAAGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAAAAT
14655372 TTC
131 TTC
* * *
14655375 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTGATAAAAT
1 AAAAAACATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAATTTTGATAAAAA
* * * *
14655440 TTTCAAAAAATATTTTTGAGGAAATTTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAAATT
66 TTTCAAAAAATATTTTTAAGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAAAAT
14655505 TTC
131 TTC
* *
14655508 AAAAAACATTTTTGA-AGAAAAGTTAAAAGTCTCAA-TTTTCTTTGAAAATAAAATTTTGATAAA
1 AAAAAACATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTCTTT-AAAATAAAATTTTGATAAA
* * * * *
14655571 AATTTCAAAAAATAGTTTTGAGGAAAAGTTGAAATTATTAATTTTCCTTGAAAATAAAAT-----
64 AATTTCAAAAAATA-TTTTTAAGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAA
14655631 --TTTC
128 AATTTC
* * * *
14655635 --AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-----A-AAAAA
1 AAAAAACATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAATTTTGATAAAAA
* * * * * *
14655692 TTTCAAAAAAAAAATATTTTTGAG-GAAATGTTAAAATCATCAATTTTCTTTGAAAATAAAA-AT
66 TTTC----AAAAAATATTTTTAAGAAAAAT-TGAAAGT-ATCAATTTTCCTTGAAAATAAAATAA
14655755 AAAAATTTC
125 AAAAATTTC
* * * ** *
14655764 AAAAATAGATATTTTTCAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATAAAA----AATAA
1 -AAAA-A-ACATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAATTTTGATAA
* * * *
14655825 AGATTTTCAAAAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCTCTTGAGAATAAAA
63 A-AATTTC--AAAAAATA-TTTTT-AAGAAAAATTGAAAGTATCAATTTTC-CTTGAAAATAAAA
*
14655889 -AATAAAGATTTC
122 TAA-AAAAATTTC
* * * * * *
14655901 AAAAAAAGATTTTTAAGGAAAAGTTAAAAATATAAATTTT
1 -AAAAAACATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
14655941 CCTTGTATAA
Statistics
Matches: 476, Mismatches: 59, Indels: 60
0.80 0.10 0.10
Matches are distributed among these distances:
119 9 0.02
120 1 0.00
121 3 0.01
122 10 0.02
123 29 0.06
125 37 0.08
126 6 0.01
127 4 0.01
129 4 0.01
132 9 0.02
133 185 0.39
134 82 0.17
135 44 0.09
136 26 0.05
137 24 0.05
138 3 0.01
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.35
Consensus pattern (133 bp):
AAAAAACATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAATTTTGATAAAAA
TTTCAAAAAATATTTTTAAGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAAATAAAAAAAT
TTC
Found at i:14655649 original size:56 final size:56
Alignment explanation
Indices: 14655579--14655685 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
14655569 AAAATTTCAA
* * *
14655579 AAAATAGTTTTGAGGAAAAGTTGAAATTATTAATTTTCCTTGAAAATAAAATTTTC
1 AAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
*
14655635 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA
1 AAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA
14655686 AAAAAATTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (56 bp):
AAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
Found at i:14655734 original size:67 final size:68
Alignment explanation
Indices: 14655635--14655945 Score: 377
Period size: 67 Copynumber: 4.6 Consensus size: 68
14655625 TAAAATTTTC
*
14655635 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAAAA-AAA-ATTTCAA
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGATTTC-A
14655698 AAAA
65 AAAA
* * * *
14655702 AAAATATTTTTGAGGAAATGTT-AAAATCATCAATTTTCTTTGAAAAT-AAAAATAAAAATTTCA
1 AAAATATTTTTGAGGAAAAGTTGAAAGT-ATCAATTTTCCTTGAAAATAAAAAATAAAGATTTCA
14655765 AAAA
65 AAAA
* * * * *
14655769 TAGATATTTTTCAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATAAAAAATAAAGATTTTC-
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGA-TTTCA
14655833 AAAA
65 AAAA
*
14655837 AAAATATTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCTCTTGAGAATAAAAAATAAAGATTTC
1 AAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTC-CTTGAAAATAAAAAATAAAGATTTC
14655901 --AAA
64 AAAAA
* * * * *
14655904 AAAAGATTTTTAAGGAAAAGTTAAAAATATAAATTTTCCTTG
1 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
14655946 TATAAAAGCA
Statistics
Matches: 211, Mismatches: 24, Indels: 19
0.83 0.09 0.07
Matches are distributed among these distances:
66 36 0.17
67 92 0.44
68 34 0.16
69 49 0.23
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (68 bp):
AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAAATAAAGATTTCAA
AAA
Found at i:14658126 original size:20 final size:19
Alignment explanation
Indices: 14658096--14658165 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
14658086 TAAAATCAGT
14658096 AAAAT-AAATAAATAACTA
1 AAAATAAAATAAATAACTA
14658114 AAAATGAAAATAAA-AACATA
1 AAAAT-AAAATAAATAAC-TA
14658134 AAATATAAAAT-AATAA-TAA
1 AAA-ATAAAATAAATAACT-A
14658153 AAAATAAAATAAA
1 AAAATAAAATAAA
14658166 ATAAAAAAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
18 13 0.29
19 11 0.24
20 19 0.42
21 2 0.04
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (19 bp):
AAAATAAAATAAATAACTA
Found at i:14658136 original size:13 final size:12
Alignment explanation
Indices: 14658095--14658166 Score: 76
Period size: 13 Copynumber: 5.8 Consensus size: 12
14658085 ATAAAATCAG
14658095 TAAAATAAATAAA
1 TAAAATAAA-AAA
*
14658108 T-AACT-AAAAA
1 TAAAATAAAAAA
14658118 TGAAAATAAAAACA
1 T-AAAATAAAAA-A
*
14658132 TAAAATATAAAA
1 TAAAATAAAAAA
14658144 TAATAATAAAAAA
1 TAA-AATAAAAAA
14658157 TAAAATAAAA
1 TAAAATAAAA
14658167 TAAAAAAACT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
10 4 0.08
11 2 0.04
12 17 0.34
13 25 0.50
14 2 0.04
ACGTcount: A:0.75, C:0.03, G:0.01, T:0.21
Consensus pattern (12 bp):
TAAAATAAAAAA
Found at i:14658144 original size:7 final size:6
Alignment explanation
Indices: 14658101--14658172 Score: 58
Period size: 6 Copynumber: 11.5 Consensus size: 6
14658091 TCAGTAAAAT
* * *
14658101 AAATAA ATAACTAA AAATGA AAATAA AAACATA AAATATA AAATAA TAATAA
1 AAATAA A-AA-TAA AAATAA AAATAA AAATA-A AAATA-A AAATAA AAATAA
14658153 AAA-ATA AAAT-A AAATAA AAA
1 AAATA-A AAATAA AAATAA AAA
14658173 AACTTGCGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.11
6 28 0.52
7 16 0.30
8 4 0.07
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:14658154 original size:38 final size:38
Alignment explanation
Indices: 14658077--14658166 Score: 105
Period size: 38 Copynumber: 2.3 Consensus size: 38
14658067 CTCAACAAAT
* *
14658077 AAATAATAATAAAATCAGTAAAATAAATAAATAACT-AA
1 AAATAA-AATAAAAACAGTAAAATAAAAAAATAACTAAA
14658115 AAATGAAAATAAAAACA-TAAAATATAAAATAATAA-TAAA
1 AAAT-AAAATAAAAACAGTAAAATA-AAAA-AATAACTAAA
14658154 AAATAAAATAAAA
1 AAATAAAATAAAA
14658167 TAAAAAAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
37 7 0.15
38 26 0.57
39 13 0.28
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.21
Consensus pattern (38 bp):
AAATAAAATAAAAACAGTAAAATAAAAAAATAACTAAA
Found at i:14658174 original size:13 final size:13
Alignment explanation
Indices: 14658095--14658174 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 13
14658085 ATAAAATCAG
14658095 TAAAATAAAT-AAA
1 TAAAA-AAATAAAA
14658108 TAACTAAAAATGAAAA
1 TAA--AAAAAT-AAAA
*
14658124 TAAAAACATAAAA
1 TAAAAAAATAAAA
14658137 TATAAAATAATAATAA
1 TA-AAAA-AATAA-AA
*
14658153 AAAATAAAATAAAA
1 TAAA-AAAATAAAA
14658167 TAAAAAAA
1 TAAAAAAA
14658175 CTTGCGATCG
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
13 13 0.24
14 18 0.33
15 13 0.24
16 11 0.20
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:14658174 original size:20 final size:19
Alignment explanation
Indices: 14658096--14658173 Score: 76
Period size: 18 Copynumber: 4.2 Consensus size: 19
14658086 TAAAATCAGT
14658096 AAAAT-AAATAAATAACT-A
1 AAAATAAAATAAATAA-TAA
*
14658114 AAAATGAAAATAAAAACATAA
1 AAAAT-AAAATAAATA-ATAA
*
14658135 AATATAAAAT-AATAATAA
1 AAAATAAAATAAATAATAA
14658153 AAAATAAAAT-AA-AATAA
1 AAAATAAAATAAATAATAA
14658170 AAAA
1 AAAA
14658174 ACTTGCGATC
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
17 9 0.17
18 20 0.38
19 3 0.06
20 14 0.27
21 6 0.12
ACGTcount: A:0.77, C:0.03, G:0.01, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAATAATAA
Found at i:14658437 original size:19 final size:20
Alignment explanation
Indices: 14658403--14658445 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
14658393 AAAAAATCAC
14658403 CAAAATCCCACCAAAAAATT
1 CAAAATCCCACCAAAAAATT
*
14658423 CAAAA-CCCACTAAAAAATT
1 CAAAATCCCACCAAAAAATT
14658442 -AAAA
1 CAAAA
14658446 AATTCATCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 13 0.59
20 5 0.23
ACGTcount: A:0.60, C:0.26, G:0.00, T:0.14
Consensus pattern (20 bp):
CAAAATCCCACCAAAAAATT
Found at i:14658955 original size:3 final size:3
Alignment explanation
Indices: 14658947--14659069 Score: 67
Period size: 3 Copynumber: 42.3 Consensus size: 3
14658937 GAGAATAAAG
* * *
14658947 ATA ATA ATA ATA ATA ACA ATA AT- AGA AT- ATA AT- ATA AT- ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
14658991 AT- ACA ATA CTA GTA ACA ATA ATT ATA ATA ATA ACA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * * * * *
14659036 ATA ATA CTA CTA ACA AAA ATA ATG ATA ATG ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14659070 CATAAAAAAA
Statistics
Matches: 88, Mismatches: 26, Indels: 12
0.70 0.21 0.10
Matches are distributed among these distances:
2 8 0.09
3 77 0.88
4 3 0.03
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:14659037 original size:25 final size:24
Alignment explanation
Indices: 14659007--14659069 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 24
14658997 TACTAGTAAC
*
14659007 AATAATTATAATAATAACAATAAAT
1 AATAATAATAATAATAACAA-AAAT
* *
14659032 AATAATAATACTACTAACAAAAAT
1 AATAATAATAATAATAACAAAAAT
* *
14659056 AATGATAATGATAA
1 AATAATAATAATAA
14659070 CATAAAAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (24 bp):
AATAATAATAATAATAACAAAAAT
Found at i:14659512 original size:56 final size:55
Alignment explanation
Indices: 14659409--14659521 Score: 149
Period size: 56 Copynumber: 2.0 Consensus size: 55
14659399 TGAATTGTAG
* *
14659409 GTCTGGTAAGATGATCTGGAAGAGCCAAGATCGAATGACTAGGATTGAACCACAA
1 GTCTGGAAAGATGATCTGGAAGAGCCAAGATCGAATCACTAGGATTGAACCACAA
* *
14659464 GTCTGGAAATATGATCTGGATCA-AGCCAAGATCGAA-CACTTGGGATTGAACCACAA
1 GTCTGGAAAGATGATCTGGA--AGAGCCAAGATCGAATCAC-TAGGATTGAACCACAA
14659520 GT
1 GT
14659522 TTAAAAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
55 20 0.39
56 30 0.59
57 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (55 bp):
GTCTGGAAAGATGATCTGGAAGAGCCAAGATCGAATCACTAGGATTGAACCACAA
Found at i:14659949 original size:69 final size:69
Alignment explanation
Indices: 14659791--14660012 Score: 220
Period size: 69 Copynumber: 3.2 Consensus size: 69
14659781 AAGATTCAAT
* * *
14659791 ATTCGTAAAGGTTTTCATATTCATAAGAAT-ACAAGGTTCGCAAGATTCAAAGTTTCACAGAGGT
1 ATTCGCAAAGGTTTTCAGATTCATAAGAATGA-AAGATTCGCAAGATTCAAAGTTTCACAGAGGT
*
14659855 TTTAG
65 TATAG
**
14659860 ATT-G-ATAAGGACTTTT-AGATTCATAAGAATGAAAGATTCGCAAGATTTC-AAGTTTCGTAGA
1 ATTCGCA-AAGG--TTTTCAGATTCATAAGAATGAAAGATTCGCAAGA-TTCAAAGTTTCACAGA
14659921 GGTTATAG
62 GGTTATAG
* * * ** * * *
14659929 ATTCGCAAAGGTTTTCAGATTCACAAAAATGAAAAATTCATAAGATTCTAAGTTTAACAAAGGTT
1 ATTCGCAAAGGTTTTCAGATTCATAAGAATGAAAGATTCGCAAGATTCAAAGTTTCACAGAGGTT
*
14659994 CTAG
66 ATAG
*
14659998 ATTCACAAAGGTTTT
1 ATTCGCAAAGGTTTT
14660013 AAGTTGCAAG
Statistics
Matches: 128, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
67 1 0.01
68 12 0.09
69 101 0.79
70 13 0.10
71 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (69 bp):
ATTCGCAAAGGTTTTCAGATTCATAAGAATGAAAGATTCGCAAGATTCAAAGTTTCACAGAGGTT
ATAG
Found at i:14660840 original size:127 final size:126
Alignment explanation
Indices: 14660660--14660955 Score: 283
Period size: 127 Copynumber: 2.3 Consensus size: 126
14660650 AGTCAAGATC
* * ** * ** * * *
14660660 AAAA-ATGAATAACTAAGATTGAACTGCAAGTCAGAAGGGTGATTTGGATCAAGTCGAGAAAAAA
1 AAAAGATGAATGACTAAGATTGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGAAAAAA
* * *
14660724 AATGACTGATCGGGA-CTAAACCATG-AGTCAAAAAGATAAAATAACTAAGACCAAGTCGAGGT
66 AATGACTGATCGAGATC-AAA-C-TGAAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGT
* ***
14660786 AAAAGATGAATGACTGAGATTGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGATTGAA
1 AAAAGATGAATGACTAAGATTGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGAAAAAA
* * * * * * *
14660851 AATGAGTGATCGAGATCGAACTGCAAGTCAAAAAGATAAAGTAATTAGGATCGAGTCAAAGT
66 AATGACTGATCGAGATCAAACTG-AAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGT
* * * *
14660913 TAAAGATAAATGACTAAGATCGAATCGTGAGTTAGAAGGGTGA
1 AAAAGATGAATGACTAAGATTGAACCGTGAGTTAGAAGGGTGA
14660956 TTTGAATCGA
Statistics
Matches: 137, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
125 2 0.01
126 5 0.04
127 129 0.94
128 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.25, T:0.20
Consensus pattern (126 bp):
AAAAGATGAATGACTAAGATTGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGAAAAAA
AATGACTGATCGAGATCAAACTGAAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGT
Found at i:14661005 original size:127 final size:127
Alignment explanation
Indices: 14660722--14661011 Score: 278
Period size: 127 Copynumber: 2.3 Consensus size: 127
14660712 GTCGAGAAAA
* * * ** * *
14660722 AAAATGACTGATCGGGACTAAACCATGAGTCAAAAAGATAAAATAACTAAGACCAAGTCGAGGTA
1 AAAATGAATGATCGAGATTAAACCACAAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGTA
* * * *
14660787 AAAGATGAATGACTGAGATTGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGATTG
66 AAAGATAAATGACTAAGATCGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGATCG
* ** ** * * * * * *
14660849 AAAATGAGTGATCGAGATCGAACTGCAAGTCAAAAAGATAAAGTAATTAGGATCGAGTCAAAGTT
1 AAAATGAATGATCGAGATTAAACCACAAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGTA
* * * * * *
14660914 AAAGATAAATGACTAAGATCGAATCGTGAGTTAGAAGGGTGA-TTTGAATCGAGTTAAGATCG
66 AAAGATAAATGACTAAGATCGAACCGTGAGTTAGAAGGGTGACCTAG-ACCAAGTCAAGATCG
* *
14660976 AAAATGAATGA-CTAGTATTAAACCACAAGTAAAAAA
1 AAAATGAATGATCGAG-ATTAAACCACAAGTCAAAAA
14661012 AAATAAAGCA
Statistics
Matches: 127, Mismatches: 34, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
126 5 0.04
127 122 0.96
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.21
Consensus pattern (127 bp):
AAAATGAATGATCGAGATTAAACCACAAGTCAAAAAGATAAAATAACTAAGACCAAGTCAAAGTA
AAAGATAAATGACTAAGATCGAACCGTGAGTTAGAAGGGTGACCTAGACCAAGTCAAGATCG
Found at i:14662705 original size:15 final size:13
Alignment explanation
Indices: 14662687--14662784 Score: 56
Period size: 13 Copynumber: 7.2 Consensus size: 13
14662677 TTAAGTTTCC
14662687 TTTTTTTCTATTTCT
1 TTTTTTTCT-TTT-T
*
14662702 TTTTTTTGTTTTT
1 TTTTTTTCTTTTT
*
14662715 TTATTTTT-TGTTT
1 TT-TTTTTCTTTTT
*
14662728 TATTTTTCTTTTCT
1 TTTTTTTCTTTT-T
14662742 TATTTTTT-TATTTT
1 T-TTTTTTCT-TTTT
* *
14662756 CTTTTTACTTTTT
1 TTTTTTTCTTTTT
* *
14662769 GTTTGTTTGTTTTT
1 -TTTTTTTCTTTTT
14662783 TT
1 TT
14662785 CATTTTTTTG
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
12 5 0.08
13 22 0.34
14 22 0.34
15 16 0.25
ACGTcount: A:0.06, C:0.06, G:0.05, T:0.83
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:14662713 original size:21 final size:21
Alignment explanation
Indices: 14662689--14662794 Score: 85
Period size: 21 Copynumber: 5.0 Consensus size: 21
14662679 AAGTTTCCTT
14662689 TTTTTCTATTTCTTTTTTTTG
1 TTTTTCTATTTCTTTTTTTTG
* * *
14662710 TTTTTTTATTT-TTTGTTTTA
1 TTTTTCTATTTCTTTTTTTTG
14662730 TTTTTCT-TTTCTTATTTTTT-
1 TTTTTCTATTTCTT-TTTTTTG
*
14662750 TATTTTCTTTTTACTTTTTGTTTG
1 T-TTTTCTATTT-CTTTTT-TTTG
* *
14662774 TTTGTT-TTTTTCATTTTTTTG
1 TTT-TTCTATTTCTTTTTTTTG
14662795 CACACCTCTT
Statistics
Matches: 71, Mismatches: 6, Indels: 16
0.76 0.06 0.17
Matches are distributed among these distances:
19 3 0.04
20 16 0.23
21 25 0.35
22 11 0.15
23 13 0.18
24 3 0.04
ACGTcount: A:0.07, C:0.07, G:0.06, T:0.81
Consensus pattern (21 bp):
TTTTTCTATTTCTTTTTTTTG
Found at i:14662715 original size:8 final size:8
Alignment explanation
Indices: 14662702--14662794 Score: 55
Period size: 8 Copynumber: 11.0 Consensus size: 8
14662692 TTCTATTTCT
14662702 TTTTTTTG
1 TTTTTTTG
14662710 TTTTTTT-
1 TTTTTTTG
*
14662717 ATTTTTTG
1 TTTTTTTG
*
14662725 TTTTATTTT
1 TTTT-TTTG
*
14662734 TCTTTTCTTA
1 T-TTTT-TTG
*
14662744 TTTTTTTA
1 TTTTTTTG
14662752 TTTTCTTT-
1 TTTT-TTTG
14662760 TTACTTTTTG
1 TT--TTTTTG
*
14662770 TTTGTTTG
1 TTTTTTTG
*
14662778 TTTTTTTCA
1 TTTTTTT-G
14662787 TTTTTTTG
1 TTTTTTTG
14662795 CACACCTCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
7 6 0.09
8 30 0.44
9 22 0.32
10 10 0.15
ACGTcount: A:0.06, C:0.05, G:0.06, T:0.82
Consensus pattern (8 bp):
TTTTTTTG
Found at i:14662748 original size:27 final size:26
Alignment explanation
Indices: 14662704--14662767 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
14662694 CTATTTCTTT
* * *
14662704 TTTTTGTTTTTTTATTTTTTGTTTTA
1 TTTTTCTTTTCTTATTTTTTATTTTA
*
14662730 TTTTTCTTTTCTTATTTTTTTATTTTC
1 TTTTTCTTTTCTTA-TTTTTTATTTTA
14662757 TTTTTACTTTT
1 TTTTT-CTTTT
14662768 TGTTTGTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.38
27 15 0.47
28 5 0.16
ACGTcount: A:0.08, C:0.06, G:0.03, T:0.83
Consensus pattern (26 bp):
TTTTTCTTTTCTTATTTTTTATTTTA
Found at i:14662753 original size:34 final size:34
Alignment explanation
Indices: 14662687--14662793 Score: 103
Period size: 34 Copynumber: 3.1 Consensus size: 34
14662677 TTAAGTTTCC
* * *
14662687 TTTTTTT-CTATTTCTTTTTTTTGTTTTTTTATTT
1 TTTTTTTACTTTTTC-TTTGTTTATTTTTTTATTT
14662721 TTTGTTTTA-TTTTTCTTT-TCTTATTTTTTTATTT
1 TTT-TTTTACTTTTTCTTTGT-TTATTTTTTTATTT
* * *
14662755 TCTTTTTACTTTTTGTTTGTTTGTTTTTTTCATTT
1 TTTTTTTACTTTTTCTTTGTTTATTTTTTT-ATTT
14662790 TTTT
1 TTTT
14662794 GCACACCTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
33 6 0.10
34 38 0.62
35 17 0.28
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.82
Consensus pattern (34 bp):
TTTTTTTACTTTTTCTTTGTTTATTTTTTTATTT
Found at i:14662760 original size:26 final size:25
Alignment explanation
Indices: 14662701--14662784 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 25
14662691 TTTCTATTTC
* *
14662701 TTTTTTTTGTTTTTTTATTTTTTGT
1 TTTTTTTTCTTTTCTTATTTTTTGT
*
14662726 TTTATTTTTCTTTTCTTATTTTTTTAT
1 TTT-TTTTTCTTTTCTTA-TTTTTTGT
*
14662753 TTTCTTTTTACTTTT-TGT-TTGTTTGT
1 TTT-TTTTT-CTTTTCT-TATTTTTTGT
14662779 TTTTTT
1 TTTTTT
14662785 CATTTTTTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
25 6 0.12
26 21 0.43
27 16 0.33
28 6 0.12
ACGTcount: A:0.06, C:0.05, G:0.06, T:0.83
Consensus pattern (25 bp):
TTTTTTTTCTTTTCTTATTTTTTGT
Found at i:14666775 original size:12 final size:12
Alignment explanation
Indices: 14666758--14666785 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14666748 TTTAAATAAG
14666758 ATAACAAAATCA
1 ATAACAAAATCA
14666770 ATAACAAAATCA
1 ATAACAAAATCA
14666782 ATAA
1 ATAA
14666786 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.68, C:0.14, G:0.00, T:0.18
Consensus pattern (12 bp):
ATAACAAAATCA
Found at i:14666795 original size:17 final size:16
Alignment explanation
Indices: 14666783--14666814 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14666773 ACAAAATCAA
14666783 TAAAATAAAAAAAAAC
1 TAAAATAAAAAAAAAC
14666799 TTAAAATAAAAAAAAA
1 -TAAAATAAAAAAAAA
14666815 AAAAAACTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (16 bp):
TAAAATAAAAAAAAAC
Found at i:14667604 original size:3 final size:3
Alignment explanation
Indices: 14667596--14667715 Score: 94
Period size: 3 Copynumber: 42.0 Consensus size: 3
14667586 GAAAATAAAG
* * *
14667596 ATA ATA ATA ATA ATA ATA AT- ATA ATA A-A TTA A-C ATT ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
14667640 ATA ATA ATA ACA ACA ATA ATA ATA ATA A-G ATA ATA AT- ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
14667685 AT- ATA CTA TATA ATA ATA AGA ATAA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA
14667716 CTACTAACAA
Statistics
Matches: 94, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
2 13 0.14
3 76 0.81
4 5 0.05
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14667673 original size:32 final size:30
Alignment explanation
Indices: 14667596--14667677 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 30
14667586 GAAAATAAAG
*
14667596 ATAATAATAAT-AATAATAAT-ATAATAAA
1 ATAATAATAATAAATAATAATAATAACAAA
* * *
14667624 TTAA-CATTATAATATAATAATAATAACAACA
1 ATAATAATAATAA-ATAATAATAATAACAA-A
14667655 ATAATAATAATAAGATAATAATA
1 ATAATAATAATAA-ATAATAATA
14667678 TAATATAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
27 4 0.10
28 4 0.10
29 8 0.20
30 6 0.15
31 4 0.10
32 15 0.37
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (30 bp):
ATAATAATAATAAATAATAATAATAACAAA
Found at i:14667700 original size:42 final size:39
Alignment explanation
Indices: 14667599--14667715 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 39
14667589 AATAAAGATA
* * * *
14667599 ATAATAATAATAATAA-TATAATAA-ATTAACATTATAAT
1 ATAATAATAATAACAACAATAATAAGAATAA-ATAATAAT
*
14667637 ATAATAATAATAACAACAATAATAATAATAAGATAATAAT
1 ATAATAATAATAACAACAATAATAAGAATAA-ATAATAAT
*
14667677 ATAAT-ATAATATACTATATAATAATAAGAATAAATAATA
1 ATAATAATAATA-AC-A-ACAATAATAAGAATAAATAATA
14667716 CTACTAACAA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
38 15 0.22
39 13 0.19
40 18 0.27
41 7 0.10
42 14 0.21
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (39 bp):
ATAATAATAATAACAACAATAATAAGAATAAATAATAAT
Found at i:14667703 original size:45 final size:45
Alignment explanation
Indices: 14667596--14667715 Score: 136
Period size: 45 Copynumber: 2.6 Consensus size: 45
14667586 GAAAATAAAG
*
14667596 ATAATAATAATAATAATAAT-ATAATAAATTAACATTATAATATA
1 ATAATAATAATAATAATAATAATAATAAATTAACAATATAATATA
* * *
14667640 ATAATAATAACAACAATAATAATAATAAGA-TAATAATATAATATA
1 ATAATAATAATAATAATAATAATAATAA-ATTAACAATATAATATA
*
14667685 ATATACTATATAATAATAAGAATAAATAATA
1 ATA-A-TA-ATAATAATAATAAT-AATAATA
14667716 CTACTAACAA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 18 0.29
45 23 0.37
46 2 0.03
47 2 0.03
48 11 0.17
49 7 0.11
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (45 bp):
ATAATAATAATAATAATAATAATAATAAATTAACAATATAATATA
Found at i:14672412 original size:16 final size:16
Alignment explanation
Indices: 14672391--14672423 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14672381 TGTAAAACCT
14672391 GCCTTACGGGCTAGTC
1 GCCTTACGGGCTAGTC
14672407 GCCTTACGGGCTAGTC
1 GCCTTACGGGCTAGTC
14672423 G
1 G
14672424 GTTAACACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.30, G:0.33, T:0.24
Consensus pattern (16 bp):
GCCTTACGGGCTAGTC
Found at i:14676371 original size:23 final size:23
Alignment explanation
Indices: 14676345--14676391 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14676335 AGAAATATGA
* *
14676345 TAGCATCTAAAAATTTAGTGATT
1 TAGCACCTAAAAATATAGTGATT
*
14676368 TAGCACCTGAAAATATAGTGATT
1 TAGCACCTAAAAATATAGTGATT
14676391 T
1 T
14676392 TGCTGGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (23 bp):
TAGCACCTAAAAATATAGTGATT
Found at i:14684698 original size:16 final size:14
Alignment explanation
Indices: 14684667--14684693 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14684657 ATTATGTAAC
14684667 TATATATTCAAGCA
1 TATATATTCAAGCA
14684681 TATATATTCAAGC
1 TATATATTCAAGC
14684694 TCATACCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (14 bp):
TATATATTCAAGCA
Found at i:14687782 original size:138 final size:138
Alignment explanation
Indices: 14687515--14687931 Score: 642
Period size: 138 Copynumber: 3.0 Consensus size: 138
14687505 GAAAAACTTG
* *
14687515 TTAAAGGGAAATTTCATA-TTTAAAAGCTTGACTTTTGTAAAATTCATTTTCAAAACAAAACATA
1 TTAAAAGGAAATTTCATATTTTAAAA-CTTGACTTTTGTAAAAATCATTTTCAAAACAAAACATA
* ** *
14687579 AAATTTCAAAAT-ATAAAGTTATGTATGCTCCACATAAGTTTGTGCT-TAAATATAAAAATAATC
65 AAATTTCAAAATCATAAAGTTATGTGTGCTCTGCCTAAGTTTGTG-TGTAAATATAAAAATAATC
14687642 AAGCACATAA
129 AAGCACATAA
* *
14687652 TTAAAATGAAATTTCATATTTTAAAACTTGACTTTTGTAAAAATCATTTTCAAAACAAAACGTAA
1 TTAAAAGGAAATTTCATATTTTAAAACTTGACTTTTGTAAAAATCATTTTCAAAACAAAACATAA
* *
14687717 AATTTCAAATTCATAAAGTTATGTGTGCTCTGCCTAAGTTTGTGTGCAAATATAAAAATAATCAA
66 AATTTCAAAATCATAAAGTTATGTGTGCTCTGCCTAAGTTTGTGTGTAAATATAAAAATAATCAA
14687782 GCACATAA
131 GCACATAA
* * *
14687790 TTAAAAGGAAATTTCATGTTTTAAAGCTTGACTTTTGTAAAAATTATTTTCAAAACAAAACATAA
1 TTAAAAGGAAATTTCATATTTTAAAACTTGACTTTTGTAAAAATCATTTTCAAAACAAAACATAA
* * *
14687855 AATTTCAAAATCATAAAGTTATGTGTGCTCTGTCTAAGTTTGTGCGTATATATAAAAATAATCAA
66 AATTTCAAAATCATAAAGTTATGTGTGCTCTGCCTAAGTTTGTGTGTAAATATAAAAATAATCAA
*
14687920 GTACATAA
131 GCACATAA
14687928 TTAA
1 TTAA
14687932 TCACACCAAG
Statistics
Matches: 256, Mismatches: 21, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
137 64 0.25
138 192 0.75
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.35
Consensus pattern (138 bp):
TTAAAAGGAAATTTCATATTTTAAAACTTGACTTTTGTAAAAATCATTTTCAAAACAAAACATAA
AATTTCAAAATCATAAAGTTATGTGTGCTCTGCCTAAGTTTGTGTGTAAATATAAAAATAATCAA
GCACATAA
Found at i:14690283 original size:47 final size:45
Alignment explanation
Indices: 14690232--14690332 Score: 148
Period size: 47 Copynumber: 2.2 Consensus size: 45
14690222 AATCAATAAT
* * *
14690232 TCCATTTTTGAGGGGATCGATCTTTTTTTGTTAAAAAAATGAATTGA
1 TCCATTTTT-AGGAGATCGATCTTTTTTT-TAAAAAAAATGAATCGA
14690279 TCCATATTTTAGGAGATCGATCTTTTTTTTAAAAAAAATGAATCGA
1 TCCAT-TTTTAGGAGATCGATCTTTTTTTTAAAAAAAATGAATCGA
14690325 TCCATTTT
1 TCCATTTT
14690333 AGGTTTTCAC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
45 3 0.06
46 20 0.40
47 23 0.46
48 4 0.08
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.43
Consensus pattern (45 bp):
TCCATTTTTAGGAGATCGATCTTTTTTTTAAAAAAAATGAATCGA
Found at i:14690306 original size:46 final size:47
Alignment explanation
Indices: 14690232--14690332 Score: 145
Period size: 46 Copynumber: 2.2 Consensus size: 47
14690222 AATCAATAAT
* *
14690232 TCCATTTTTGAGGGGATCGATCTTTTTTTGTT-AAAAAAATGAATTGA
1 TCCATTTTTGAGGAGATCGATCTTTTTTT-TTAAAAAAAATGAATCGA
14690279 TCCATATTTT-AGGAGATCGATC-TTTTTTTTAAAAAAAATGAATCGA
1 TCCAT-TTTTGAGGAGATCGATCTTTTTTTTTAAAAAAAATGAATCGA
14690325 TCCATTTT
1 TCCATTTT
14690333 AGGTTTTCAC
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
45 5 0.10
46 25 0.50
47 16 0.32
48 4 0.08
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.43
Consensus pattern (47 bp):
TCCATTTTTGAGGAGATCGATCTTTTTTTTTAAAAAAAATGAATCGA
Found at i:14693664 original size:20 final size:20
Alignment explanation
Indices: 14693619--14693665 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14693609 AAGATTCATA
14693619 TAAGG-TTTAAGGTTTCACC
1 TAAGGTTTTAAGGTTTCACC
* * *
14693638 TAGGGTTTTAGGGTTTCACT
1 TAAGGTTTTAAGGTTTCACC
14693658 TAAGGTTT
1 TAAGGTTT
14693666 GAATTTAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.43
Consensus pattern (20 bp):
TAAGGTTTTAAGGTTTCACC
Found at i:14693937 original size:3 final size:3
Alignment explanation
Indices: 14693929--14693960 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14693919 TCTAAAGTTG
14693929 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14693961 GTCTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14695010 original size:18 final size:19
Alignment explanation
Indices: 14694987--14695029 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
14694977 TTTACTGTCT
*
14694987 CTGCTTCTTAT-TTTTTTG
1 CTGCTTCTTATCCTTTTTG
14695005 CTGCTT-TTATCCTTTTTG
1 CTGCTTCTTATCCTTTTTG
*
14695023 TTGCTTC
1 CTGCTTC
14695030 CGTGCCTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.05, C:0.21, G:0.12, T:0.63
Consensus pattern (19 bp):
CTGCTTCTTATCCTTTTTG
Found at i:14696977 original size:22 final size:20
Alignment explanation
Indices: 14696952--14696992 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
14696942 CTTAAAAGAG
*
14696952 CTTATGCAACAGCTCAACTCAA
1 CTTAGGCAACA-CTC-ACTCAA
14696974 CTTAGGCAACACTCACTCA
1 CTTAGGCAACACTCACTCA
14696993 TTGGCAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.34, C:0.34, G:0.10, T:0.22
Consensus pattern (20 bp):
CTTAGGCAACACTCACTCAA
Found at i:14699763 original size:18 final size:18
Alignment explanation
Indices: 14699740--14699783 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
14699730 CTCCCTTTTT
14699740 TGCTATTTTCTTTCAAAG
1 TGCTATTTTCTTTCAAAG
14699758 TGCTATTTTCTTTCAAAG
1 TGCTATTTTCTTTCAAAG
*
14699776 TGCCATTT
1 TGCTATTT
14699784 CGAACTTAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.50
Consensus pattern (18 bp):
TGCTATTTTCTTTCAAAG
Found at i:14702381 original size:21 final size:20
Alignment explanation
Indices: 14702338--14702385 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
14702328 TCTTGAATCA
* * *
14702338 ATTTTTCAATGTACTTTTAG
1 ATTTCTCAATGAAATTTTAG
14702358 ATTTCTCAATGAAATTTCTAG
1 ATTTCTCAATGAAATTT-TAG
14702379 A-TTCTCA
1 ATTTCTCA
14702386 CGTTCCCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (20 bp):
ATTTCTCAATGAAATTTTAG
Found at i:14702492 original size:19 final size:19
Alignment explanation
Indices: 14702447--14702492 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
14702437 TTAATTCATG
*
14702447 ATTTTGACCTTTTTACAGT
1 ATTTTGATCTTTTTACAGT
14702466 ATTTTGATCTTTTTACAGT
1 ATTTTGATCTTTTTACAGT
*
14702485 GTTTTGAT
1 ATTTTGAT
14702493 TGGTTCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.57
Consensus pattern (19 bp):
ATTTTGATCTTTTTACAGT
Found at i:14704210 original size:46 final size:46
Alignment explanation
Indices: 14704155--14704269 Score: 153
Period size: 45 Copynumber: 2.5 Consensus size: 46
14704145 TGACATAATT
14704155 ACTAAAGTTTTTTTAATGAGAACCTTTGAAATTTTAGATGTGAAATC
1 ACTAAAGTTTTTTTAATGAGAACCTTTGAAATTTTAGATGTG-AATC
* * * *
14704202 A-TAAAG-TTTTTAAATGAGAACCTTTGAGATTTTGGATGTGAATT
1 ACTAAAGTTTTTTTAATGAGAACCTTTGAAATTTTAGATGTGAATC
* *
14704246 ACTAAAATTTTTTTAATGTGAACC
1 ACTAAAGTTTTTTTAATGAGAACC
14704270 CTCAAGTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 4 0.07
45 35 0.59
46 19 0.32
47 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.41
Consensus pattern (46 bp):
ACTAAAGTTTTTTTAATGAGAACCTTTGAAATTTTAGATGTGAATC
Found at i:14704573 original size:17 final size:17
Alignment explanation
Indices: 14704543--14704581 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
14704533 AGGTTTTATG
14704543 AATCTAAAAATCTTGCA
1 AATCTAAAAATCTTGCA
* *
14704560 AATCTGAAAGTCTTGCA
1 AATCTAAAAATCTTGCA
14704577 AATCT
1 AATCT
14704582 TCATCTTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (17 bp):
AATCTAAAAATCTTGCA
Found at i:14704909 original size:52 final size:53
Alignment explanation
Indices: 14704841--14705117 Score: 221
Period size: 52 Copynumber: 5.3 Consensus size: 53
14704831 AAATTAGTAG
* * * *
14704841 ATTTAAAAGGTTTTAAAGCTATTAAGCCTCTATATAAAAG-AGCTAATTTCTTA
1 ATTT-AAAGTTTTTAAAGTTGTTAAGCCTCTATATAAAAGAAGCTCATTTCTTA
* *
14704894 ATTTAAAGTTTTTAAAGTTGTTGAA-CCTCTATAT-AGAGAAG-TCCATTTCTGA
1 ATTTAAAGTTTTTAAAGTTGTT-AAGCCTCTATATAAAAGAAGCT-CATTTCTTA
* * * * *
14704946 ATTTAAAGTTATTAAAATTGTTGAGCCTATGTAT-AAAGAAGC-CGATTTCTTA
1 ATTTAAAGTTTTTAAAGTTGTTAAGCCTCTATATAAAAGAAGCTC-ATTTCTTA
* * * ** * *
14704998 CATTTAAAGTTTTTAAAGTTGTTAAGCCTTTGTGT-AGGGGAGCTCATTTTTTA
1 -ATTTAAAGTTTTTAAAGTTGTTAAGCCTCTATATAAAAGAAGCTCATTTCTTA
* * * * *
14705051 ATTAAAAGTTTTTAAAGTTGTTGAACCCT-TATATAGAGGAAGCT-ATTTTTTA
1 ATTTAAAGTTTTTAAAGTTGTT-AAGCCTCTATATAAAAGAAGCTCATTTCTTA
*
14705103 ATTTAAAGTTATTAA
1 ATTTAAAGTTTTTAA
14705118 GCCTTAGTTT
Statistics
Matches: 183, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
51 6 0.03
52 118 0.64
53 58 0.32
54 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.41
Consensus pattern (53 bp):
ATTTAAAGTTTTTAAAGTTGTTAAGCCTCTATATAAAAGAAGCTCATTTCTTA
Found at i:14705020 original size:53 final size:51
Alignment explanation
Indices: 14704886--14705117 Score: 232
Period size: 52 Copynumber: 4.5 Consensus size: 51
14704876 AAAAGAGCTA
* * *
14704886 ATTTCTTAATTTAAAGTTTTTAAAGTTGTTGAACCTCTATATAGAGAAGTCC
1 ATTTCTTAATTTAAAGTTTTTAAAGTTGTTGAGCCTATGTATAGAGAAG-CC
* * * *
14704938 ATTTCTGAATTTAAAGTTATTAAAATTGTTGAGCCTATGTATAAAGAAGCC
1 ATTTCTTAATTTAAAGTTTTTAAAGTTGTTGAGCCTATGTATAGAGAAGCC
* * * * *
14704989 GATTTCTTACATTTAAAGTTTTTAAAGTTGTTAAGCCTTTGTGTAGGGGAGCTC
1 -ATTTCTTA-ATTTAAAGTTTTTAAAGTTGTTGAGCCTATGTATAGAGAAGC-C
* * * * *
14705043 ATTTTTTAATTAAAAGTTTTTAAAGTTGTTGAACCCT-TATATAGAGGAAGCT
1 ATTTCTTAATTTAAAGTTTTTAAAGTTGTTG-AGCCTATGTATAGA-GAAGCC
* *
14705095 ATTTTTTAATTTAAAGTTATTAA
1 ATTTCTTAATTTAAAGTTTTTAA
14705118 GCCTTAGTTT
Statistics
Matches: 148, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
51 2 0.01
52 96 0.65
53 49 0.33
54 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (51 bp):
ATTTCTTAATTTAAAGTTTTTAAAGTTGTTGAGCCTATGTATAGAGAAGCC
Found at i:14705151 original size:43 final size:43
Alignment explanation
Indices: 14705104--14705194 Score: 96
Period size: 43 Copynumber: 2.1 Consensus size: 43
14705094 TATTTTTTAA
*
14705104 TTTAAAGTTATTAAGC-CTTAGTTTAGAAGAGA-TATTTAAAGTT
1 TTTAAAGTTATTAAACTCTTA-TTTAGAAGA-ATTATTTAAAGTT
* * * * *
14705147 TTTAAGGTTGTTAAACTTTTATTTAGAGGAATTATTTGAAGTT
1 TTTAAAGTTATTAAACTCTTATTTAGAAGAATTATTTAAAGTT
14705190 TTTAA
1 TTTAA
14705195 GCTTTATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.03
43 36 0.90
44 3 0.08
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.46
Consensus pattern (43 bp):
TTTAAAGTTATTAAACTCTTATTTAGAAGAATTATTTAAAGTT
Found at i:14706590 original size:18 final size:18
Alignment explanation
Indices: 14706563--14706605 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14706553 CAAGCATGTG
*
14706563 TTTTTTTTTTCATTTT-A
1 TTTTTTTTTTAATTTTAA
14706580 TTTTTTGTTTTAATTTTAA
1 TTTTTT-TTTTAATTTTAA
14706599 TTTTTTT
1 TTTTTTT
14706606 CCTTTTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 10 0.43
19 7 0.30
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTTTTAATTTTAA
Found at i:14706613 original size:17 final size:17
Alignment explanation
Indices: 14706593--14706639 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
14706583 TTTGTTTTAA
* *
14706593 TTTTAATTTTTTTCCTT
1 TTTTGATTTTTTTCCGT
* *
14706610 TTTTGATTTATTTCGGT
1 TTTTGATTTTTTTCCGT
14706627 TTTTGATTTTTTT
1 TTTTGATTTTTTT
14706640 TATTTTGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.11, C:0.06, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTGATTTTTTTCCGT
Found at i:14707929 original size:32 final size:29
Alignment explanation
Indices: 14707887--14707950 Score: 74
Period size: 32 Copynumber: 2.1 Consensus size: 29
14707877 GATTCAAAGA
14707887 TTTTTTTTTTTCCATTTATGTTGTTTTTTAT
1 TTTTTTTTTTTCCATTTATGTT-TTTTTT-T
** *
14707918 TTTTTTATTTTTGGATTTTTGTTTTTTTTT
1 TTTTTT-TTTTTCCATTTATGTTTTTTTTT
14707948 TTT
1 TTT
14707951 AAACAAGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 4 0.14
31 12 0.41
32 13 0.45
ACGTcount: A:0.08, C:0.03, G:0.08, T:0.81
Consensus pattern (29 bp):
TTTTTTTTTTTCCATTTATGTTTTTTTTT
Found at i:14708869 original size:8 final size:9
Alignment explanation
Indices: 14708847--14708880 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
14708837 TCAAAACATT
*
14708847 TTTTTTCGAT
1 TTTTTT-GAA
14708857 TTTTTTGAA
1 TTTTTTGAA
14708866 TTTTTTGAA
1 TTTTTTGAA
14708875 TTTTTT
1 TTTTTT
14708881 TCAAAATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.74
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:14709432 original size:11 final size:11
Alignment explanation
Indices: 14709410--14709441 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
14709400 AAATTAATTC
14709410 CTTTTTTCTTTT
1 CTTTTTT-TTTT
14709422 CTTTTTTTTTT
1 CTTTTTTTTTT
14709433 CTTTTTTTT
1 CTTTTTTTT
14709442 AAAACAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:14709432 original size:16 final size:15
Alignment explanation
Indices: 14709411--14709441 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
14709401 AATTAATTCC
14709411 TTTTTTCTTTTCTTTT
1 TTTTTTCTTTT-TTTT
14709427 TTTTTTCTTTTTTTT
1 TTTTTTCTTTTTTTT
14709442 AAAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTCTTTTTTTT
Found at i:14709963 original size:26 final size:26
Alignment explanation
Indices: 14709905--14709964 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
14709895 GGTTTTAATG
*
14709905 TTAGGGTTAAGGTTTAGATTTAGGAT
1 TTAGGGTTAAGGTTTAGATGTAGGAT
* * * *
14709931 TTTGGGTTAAGGTTTTGATGTGGGGT
1 TTAGGGTTAAGGTTTAGATGTAGGAT
14709957 TTAGGGTT
1 TTAGGGTT
14709965 TAGGGAATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (26 bp):
TTAGGGTTAAGGTTTAGATGTAGGAT
Found at i:14711873 original size:18 final size:20
Alignment explanation
Indices: 14711832--14711875 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
14711822 TTTGTCCAAT
*
14711832 TTTGACTTTGTTTGACAAAT
1 TTTGACTTTGTTTGACAAAG
*
14711852 TTTGAC-TTG-TTGACTAAG
1 TTTGACTTTGTTTGACAAAG
14711870 TTTGAC
1 TTTGAC
14711876 CGGATTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 13 0.59
19 3 0.14
20 6 0.27
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (20 bp):
TTTGACTTTGTTTGACAAAG
Found at i:14712697 original size:30 final size:30
Alignment explanation
Indices: 14712640--14712697 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14712630 TTAATTTAAG
* **
14712640 TCTAATTTTTTCCTTTTTTTTTTCTTTTCT
1 TCTAATTTTTTCATTTTTTTTAACTTTTCT
14712670 TCTAATTCTTTT-ATTTTTTTTAACTTTT
1 TCTAATT-TTTTCATTTTTTTTAACTTTT
14712698 TTTTCTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (30 bp):
TCTAATTTTTTCATTTTTTTTAACTTTTCT
Found at i:14713055 original size:19 final size:20
Alignment explanation
Indices: 14713033--14713071 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14713023 TTTTCACCTT
14713033 TTTCATTT-TTTTCCTTTTC
1 TTTCATTTATTTTCCTTTTC
*
14713052 TTTCATTTATTTTCTTTTTC
1 TTTCATTTATTTTCCTTTTC
14713072 CTTTACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTCATTTATTTTCCTTTTC
Found at i:14715734 original size:13 final size:13
Alignment explanation
Indices: 14715716--14715740 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14715706 CCATTTAGCC
14715716 TTAAAAATATCTT
1 TTAAAAATATCTT
14715729 TTAAAAATATCT
1 TTAAAAATATCT
14715741 ATCAAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAAAATATCTT
Found at i:14716118 original size:64 final size:64
Alignment explanation
Indices: 14716005--14716179 Score: 176
Period size: 67 Copynumber: 2.7 Consensus size: 64
14715995 TAATTTCAGT
* * * **
14716005 TTTTTAAAAC-CATGAAATCTT-TCAATGGTTTGGTAAGATTTTATAAATTTTTTTTC-AAAATT
1 TTTTTAAAACACATGAAATCTTCT-AATAGTTTGGT-AGATTTCATAAATTTATTTTCAAAAAAA
14716067 A
64 A
* * *
14716068 TTTTTAAAACATATTAAATCTTCTAATAGTTTGGTAGACTTTCATGAATTTATTTTCAAAAAAAA
1 TTTTTAAAACACATGAAATCTTCTAATAGTTTGGTAGA-TTTCATAAATTTATTTTC--AAAAAA
14716133 AA
63 AA
* * *
14716135 TTTTTAAAGCACATGAAATCTTCTAATAATTTGGTAAGGTTTCAT
1 TTTTTAAAACACATGAAATCTTCTAATAGTTTGGT-AGATTTCAT
14716180 GATTTTAGTT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
63 13 0.14
64 34 0.37
65 1 0.01
67 42 0.46
68 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (64 bp):
TTTTTAAAACACATGAAATCTTCTAATAGTTTGGTAGATTTCATAAATTTATTTTCAAAAAAAA
Found at i:14716362 original size:66 final size:66
Alignment explanation
Indices: 14716252--14716394 Score: 164
Period size: 66 Copynumber: 2.2 Consensus size: 66
14716242 GTATTCAATC
*
14716252 TCAAAATTTTATTATTTAAACCCATAAAATCCTCTGATAATTTGATAAGATTTT-AGGAATTTAT
1 TCAAAATTTTATTATTTAAACCCATAAAATCCTCTAATAATTTGAT-AGATTTTAAGGAATTTAT
14716316 TG
65 TG
* * * * * * *
14716318 TCAAATTTTTATTTTTTAAACTCATAAAATGCT-TCAATAGTTTGATAGGTTTTAATGAATTTAT
1 TCAAAATTTTATTATTTAAACCCATAAAATCCTCT-AATAATTTGATAGATTTTAAGGAATTTA-
*
14716382 TTT
64 TTG
14716385 TCAAAATTTT
1 TCAAAATTTT
14716395 CTTAAAAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
65 7 0.11
66 46 0.72
67 11 0.17
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (66 bp):
TCAAAATTTTATTATTTAAACCCATAAAATCCTCTAATAATTTGATAGATTTTAAGGAATTTATT
G
Found at i:14716591 original size:20 final size:19
Alignment explanation
Indices: 14716559--14716600 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
14716549 ACAAACAAGT
*
14716559 AAATAAAATAAAATGATAAA
1 AAATAAAATAAAA-GACAAA
14716579 AAATAATAA-AAAAGACAAA
1 AAATAA-AATAAAAGACAAA
14716598 AAA
1 AAA
14716601 AACATGTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 10 0.50
21 2 0.10
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (19 bp):
AAATAAAATAAAAGACAAA
Found at i:14716908 original size:21 final size:21
Alignment explanation
Indices: 14716884--14716929 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
14716874 GATGCCAATC
14716884 AAAAAATT-AAAG-ATCTCATT
1 AAAAAATTCAAAGCATC-CATT
*
14716904 GAAAAATTCAAAGCATCCATT
1 AAAAAATTCAAAGCATCCATT
14716925 AAAAA
1 AAAAA
14716930 TTGGTTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
21 12 0.55
22 3 0.14
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.24
Consensus pattern (21 bp):
AAAAAATTCAAAGCATCCATT
Found at i:14716910 original size:20 final size:20
Alignment explanation
Indices: 14716885--14716931 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
14716875 ATGCCAATCA
14716885 AAAAATT-AAAG-ATCTCATT
1 AAAAATTCAAAGCATC-CATT
14716904 GAAAAATTCAAAGCATCCATT
1 -AAAAATTCAAAGCATCCATT
14716925 AAAAATT
1 AAAAATT
14716932 GGTTGAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.56
21 8 0.32
22 3 0.12
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (20 bp):
AAAAATTCAAAGCATCCATT
Found at i:14718435 original size:23 final size:22
Alignment explanation
Indices: 14718409--14718468 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
14718399 TAATAAATAA
*
14718409 AAAATCTATAAAAAAATAATTTT
1 AAAATCTA-AAAAAAAGAATTTT
* *
14718432 AAAATGTAAAAATAAGAATTTT
1 AAAATCTAAAAAAAAGAATTTT
*
14718454 ATATAT-TAAAAAAAA
1 A-AAATCTAAAAAAAA
14718469 CATATTTTCG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 21 0.68
23 10 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (22 bp):
AAAATCTAAAAAAAAGAATTTT
Found at i:14720818 original size:18 final size:18
Alignment explanation
Indices: 14720738--14720819 Score: 58
Period size: 20 Copynumber: 4.4 Consensus size: 18
14720728 TTTTTTTAAA
**
14720738 TTAAAAAATT-ATGAAAC
1 TTAAAAAATTCAAAAAAC
*
14720755 TTAAAAAATTCTAAAAAAT
1 TTAAAAAATTC-AAAAAAC
** *
14720774 TTCAAAATTTTAATAAAAATC
1 TT-AAAAAATTCA-AAAAA-C
*
14720795 TAAAAAAATTCAAAAAAC
1 TTAAAAAATTCAAAAAAC
14720813 TTAAAAA
1 TTAAAAA
14720820 CTAAAAATTA
Statistics
Matches: 48, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
17 10 0.21
18 7 0.15
19 12 0.25
20 18 0.38
21 1 0.02
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.29
Consensus pattern (18 bp):
TTAAAAAATTCAAAAAAC
Found at i:14720854 original size:22 final size:22
Alignment explanation
Indices: 14720829--14720871 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14720819 ACTAAAAATT
14720829 AAAAAA-AGTTAAATTTTTTTTG
1 AAAAAATA-TTAAATTTTTTTTG
*
14720851 AAAAAATATTGAATTTTTTTT
1 AAAAAATATTAAATTTTTTTT
14720872 ATTTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
AAAAAATATTAAATTTTTTTTG
Found at i:14720977 original size:20 final size:19
Alignment explanation
Indices: 14720954--14720997 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
14720944 TTATTAAGAT
14720954 TTTTTAAAGA-AATTTTTAGA
1 TTTTTAAA-ATAA-TTTTAGA
14720974 TTTTTAAAATAATTTTAGA
1 TTTTTAAAATAATTTTAGA
14720993 TTTTT
1 TTTTT
14720998 TATCTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTTAAAATAATTTTAGA
Found at i:14720990 original size:31 final size:31
Alignment explanation
Indices: 14720932--14720990 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
14720922 TATTTTTCGA
* *
14720932 AAATTTTTAGAATTATTAAGATTTTTTAAAG
1 AAATTTTTAGAATTATTAAAATATTTTAAAG
*
14720963 AAATTTTTAG-ATTTTTAAAATAATTTTA
1 AAATTTTTAGAATTATTAAAAT-ATTTTA
14720991 GATTTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (31 bp):
AAATTTTTAGAATTATTAAAATATTTTAAAG
Found at i:14720998 original size:20 final size:21
Alignment explanation
Indices: 14720950--14720999 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
14720940 AGAATTATTA
14720950 AGATTTTTTAAAGAAATTTTT
1 AGATTTTTTAAAGAAATTTTT
14720971 AGA-TTTTTAAA-ATAA-TTTT
1 AGATTTTTTAAAGA-AATTTTT
14720990 AGATTTTTTA
1 AGATTTTTTA
14721000 TCTTTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 8 0.30
20 16 0.59
21 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (21 bp):
AGATTTTTTAAAGAAATTTTT
Found at i:14721155 original size:18 final size:18
Alignment explanation
Indices: 14721132--14721216 Score: 64
Period size: 19 Copynumber: 4.6 Consensus size: 18
14721122 AGATTTTTTG
*
14721132 AATTTTT-AAGTTTTCAT
1 AATTTTTAAAATTTTCAT
*
14721149 AATTTTTAAAATTTTTAT
1 AATTTTTAAAATTTTCAT
**
14721167 AATTTCAAAAAATATTTCAT
1 AATTT-TTAAAAT-TTTCAT
* ** *
14721187 ACTTTTTAATTGTTTTAAT
1 AATTTTTAA-AATTTTCAT
14721206 AATTTTTAAAA
1 AATTTTTAAAA
14721217 ATATTTTAAA
Statistics
Matches: 50, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
17 7 0.14
18 13 0.26
19 20 0.40
20 10 0.20
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (18 bp):
AATTTTTAAAATTTTCAT
Found at i:14721193 original size:38 final size:39
Alignment explanation
Indices: 14721143--14721231 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 39
14721133 ATTTTTAAGT
14721143 TTTCATAATTTTTAAAAT-TTTT-ATAATTTCAAAAAATA
1 TTTCATAATTTTT-AAATGTTTTAATAATTTCAAAAAATA
* * **
14721181 TTTCATACTTTTTAATTGTTTTAATAATTTTTAAAAATA
1 TTTCATAATTTTTAAATGTTTTAATAATTTCAAAAAATA
*
14721220 TTTTA-AATTTTT
1 TTTCATAATTTTT
14721232 TTTATTTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
37 3 0.07
38 22 0.51
39 18 0.42
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.56
Consensus pattern (39 bp):
TTTCATAATTTTTAAATGTTTTAATAATTTCAAAAAATA
Found at i:14721232 original size:39 final size:37
Alignment explanation
Indices: 14721159--14721258 Score: 103
Period size: 39 Copynumber: 2.7 Consensus size: 37
14721149 AATTTTTAAA
** *
14721159 ATTTTTATAATTTCAAAAAATATTTCATACTTTTTAATT
1 ATTTTTATAATTTTTAAAAATATTTCAAACTTTTT--TT
* * * *
14721198 GTTTTAATAATTTTTAAAAATATTTTAAATTTTTTTT
1 ATTTTTATAATTTTTAAAAATATTTCAAACTTTTTTT
*
14721235 ATTTTTA-AATTTTTAAAAAAATTT
1 ATTTTTATAATTTTTAAAAATATTT
14721259 AAAAAATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
36 16 0.31
37 7 0.14
39 28 0.55
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (37 bp):
ATTTTTATAATTTTTAAAAATATTTCAAACTTTTTTT
Found at i:14721269 original size:35 final size:36
Alignment explanation
Indices: 14721206--14721274 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
14721196 TTGTTTTAAT
* ***
14721206 AATTTTTAAAAATATTTTAAATTTTTTTTATTTTTA
1 AATTTTTAAAAATAATTTAAAAAATTTTTATTTTTA
14721242 AATTTTTAAAAA-AATTTAAAAAATTTTTATTTT
1 AATTTTTAAAAATAATTTAAAAAATTTTTATTTT
14721275 ATACTAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 17 0.59
36 12 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (36 bp):
AATTTTTAAAAATAATTTAAAAAATTTTTATTTTTA
Found at i:14721469 original size:2 final size:2
Alignment explanation
Indices: 14721462--14721493 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14721452 AGTAAAATTA
14721462 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14721494 AAATACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14729779 original size:3 final size:3
Alignment explanation
Indices: 14729771--14729810 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14729761 GTTTTGAAGG
14729771 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14729811 TTAAGAGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14730936 original size:34 final size:34
Alignment explanation
Indices: 14730895--14731046 Score: 164
Period size: 34 Copynumber: 4.5 Consensus size: 34
14730885 GCATATCCGA
*
14730895 AAACTTTTTAAAATTTTAAAAAATGCATGTCTAG
1 AAACTTTTTAAAATTTTCAAAAATGCATGTCTAG
* * * * * *
14730929 AATCTTTTTAGAGTTTTCGAAAATACATGTTTAG
1 AAACTTTTTAAAATTTTCAAAAATGCATGTCTAG
* *
14730963 AAACTTTTAAAAATTCT-AAAAATGCATGTCTAG
1 AAACTTTTTAAAATTTTCAAAAATGCATGTCTAG
* * *
14730996 AAA-TGTTTAAAAGTTTTCAAAAATGCATCTTTAG
1 AAACTTTTTAAAA-TTTTCAAAAATGCATGTCTAG
*
14731030 AAACTTTTAAAAATTTT
1 AAACTTTTTAAAATTTT
14731047 TGGAACCTTA
Statistics
Matches: 93, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
32 7 0.08
33 19 0.20
34 60 0.65
35 7 0.08
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.39
Consensus pattern (34 bp):
AAACTTTTTAAAATTTTCAAAAATGCATGTCTAG
Found at i:14730997 original size:67 final size:68
Alignment explanation
Indices: 14730895--14731044 Score: 205
Period size: 67 Copynumber: 2.2 Consensus size: 68
14730885 GCATATCCGA
* * * * * * *
14730895 AAACTTTTTAAAATTTTAAAAAATGCATGTCTAG-AATCTTTTTAGAGTTTTCGAAAATACATGT
1 AAACTTTTAAAAATTCTAAAAAATGCATGTCTAGAAAT-GTTTAAAAGTTTTCAAAAATACATCT
14730959 TTAG
65 TTAG
*
14730963 AAACTTTTAAAAATTCT-AAAAATGCATGTCTAGAAATGTTTAAAAGTTTTCAAAAATGCATCTT
1 AAACTTTTAAAAATTCTAAAAAATGCATGTCTAGAAATGTTTAAAAGTTTTCAAAAATACATCTT
14731027 TAG
66 TAG
14731030 AAACTTTTAAAAATT
1 AAACTTTTAAAAATT
14731045 TTTGGAACCT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
67 55 0.75
68 18 0.25
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (68 bp):
AAACTTTTAAAAATTCTAAAAAATGCATGTCTAGAAATGTTTAAAAGTTTTCAAAAATACATCTT
TAG
Found at i:14735848 original size:20 final size:20
Alignment explanation
Indices: 14735823--14735863 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14735813 TTGTCCGCTG
14735823 CCGCCAGGTCAGTTTTTCTC
1 CCGCCAGGTCAGTTTTTCTC
14735843 CCGCCAGGTCAGTTTTTCTC
1 CCGCCAGGTCAGTTTTTCTC
14735863 C
1 C
14735864 TTTCTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.37, G:0.20, T:0.34
Consensus pattern (20 bp):
CCGCCAGGTCAGTTTTTCTC
Found at i:14736464 original size:18 final size:17
Alignment explanation
Indices: 14736414--14736508 Score: 54
Period size: 18 Copynumber: 5.5 Consensus size: 17
14736404 AAGTTTACTA
14736414 ATTATTTATTTTTATATT
1 ATTA-TTATTTTTATATT
14736432 ATTATTATTTATTATATAT
1 ATTATTATTT-TTATAT-T
* *
14736451 ATGT-TTCTTTTTATAAT
1 AT-TATTATTTTTATATT
* *
14736468 -TTA-AATTTTCAT-TCT
1 ATTATTATTTTTATAT-T
* *
14736483 TTTATTATTATTATTATT
1 ATTATTATTTTTA-TATT
14736501 ATTATTAT
1 ATTATTAT
14736509 GGCCATTAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
15 8 0.14
16 4 0.07
17 12 0.21
18 24 0.41
19 9 0.16
20 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (17 bp):
ATTATTATTTTTATATT
Found at i:14736492 original size:3 final size:3
Alignment explanation
Indices: 14736484--14736508 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14736474 TTTCATTCTT
14736484 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
14736509 GGCCATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14739527 original size:20 final size:21
Alignment explanation
Indices: 14739495--14739537 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
14739485 CATCATATTG
14739495 TTTTAGGGTTAACAATA-TGT
1 TTTTAGGGTTAACAATACTGT
*
14739515 TTTTA-GGTCTAACCATACTGT
1 TTTTAGGGT-TAACAATACTGT
14739536 TT
1 TT
14739538 GACATATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 12 0.60
21 5 0.25
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (21 bp):
TTTTAGGGTTAACAATACTGT
Found at i:14741334 original size:30 final size:30
Alignment explanation
Indices: 14741293--14741365 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
14741283 TATCTAATTG
* * *
14741293 AAGGTTTAATTGAGTGAAAATAGATGTTTA
1 AAGGTTCAATTGAATGAAAATAGATATTTA
*
14741323 AGGGTTCAATTGAATGAAAATAGATATTTA
1 AAGGTTCAATTGAATGAAAATAGATATTTA
*
14741353 AAGATTCAATTGA
1 AAGGTTCAATTGA
14741366 TTCGAAATAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (30 bp):
AAGGTTCAATTGAATGAAAATAGATATTTA
Found at i:14743764 original size:41 final size:42
Alignment explanation
Indices: 14743718--14743804 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 42
14743708 GTCAATGCTC
** *
14743718 CCTTACCACCTCCTATAAGCTGAAAACCCAAAAAATAA-TAG
1 CCTTACCACCTCCTATAAGCCAAAAACCCAAAAAAAAAGTAG
* * * *
14743759 CCTTACCACTTCTTGTAAGCCAAAAACCTAAAAAAAAAGTAG
1 CCTTACCACCTCCTATAAGCCAAAAACCCAAAAAAAAAGTAG
14743801 CCTT
1 CCTT
14743805 TCACCATTAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 31 0.82
42 7 0.18
ACGTcount: A:0.43, C:0.28, G:0.08, T:0.22
Consensus pattern (42 bp):
CCTTACCACCTCCTATAAGCCAAAAACCCAAAAAAAAAGTAG
Found at i:14744883 original size:19 final size:20
Alignment explanation
Indices: 14744854--14744904 Score: 77
Period size: 19 Copynumber: 2.5 Consensus size: 20
14744844 GAGGAATTTC
14744854 AAATGATTATTTTTACTAAG
1 AAATGATTATTTTTACTAAG
*
14744874 AAAT-ATTATTTTTACTAACC
1 AAATGATTATTTTTACTAA-G
14744894 AAATGATTATT
1 AAATGATTATT
14744905 CTCTTGTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 14 0.50
20 8 0.29
21 6 0.21
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (20 bp):
AAATGATTATTTTTACTAAG
Found at i:14747176 original size:12 final size:12
Alignment explanation
Indices: 14747158--14747200 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
14747148 CCCTTTTTTC
14747158 ATTCATTTATTT
1 ATTCATTTATTT
* *
14747170 GTTCATTCATTT
1 ATTCATTTATTT
* *
14747182 ATTTATTTATTC
1 ATTCATTTATTT
14747194 ATTCATT
1 ATTCATT
14747201 CATGTATCCA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.63
Consensus pattern (12 bp):
ATTCATTTATTT
Found at i:14747176 original size:16 final size:16
Alignment explanation
Indices: 14747155--14747196 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
14747145 ATTCCCTTTT
*
14747155 TTCATTCATTTATTTG
1 TTCATTCATTTATTTA
14747171 TTCATTCATTTATTTA
1 TTCATTCATTTATTTA
*
14747187 TTTATTCATT
1 TTCATTCATT
14747197 CATTCATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.64
Consensus pattern (16 bp):
TTCATTCATTTATTTA
Found at i:14747180 original size:20 final size:20
Alignment explanation
Indices: 14747155--14747203 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
14747145 ATTCCCTTTT
*
14747155 TTCATTCATTTATTTGTTCA
1 TTCATTCATTTATTTATTCA
*
14747175 TTCATTTATTTATTTATTCA
1 TTCATTCATTTATTTATTCA
14747195 TTCATTCAT
1 TTCATTCAT
14747204 GTATCCACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.02, T:0.61
Consensus pattern (20 bp):
TTCATTCATTTATTTATTCA
Found at i:14749785 original size:52 final size:52
Alignment explanation
Indices: 14749723--14749827 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 52
14749713 TAGCTAATTG
* * *
14749723 GCCTATCTAGGTCTTTAGGCTCTTAATAGATGCAGTCTGATTTTGAAACATA
1 GCCTATCTAGGTCTTCAGGCTCTTAATAGATGCAATCTGATTCTGAAACATA
* *
14749775 GCCTATCTAGGTCTTCAGGCTCTTGATAGATGCAATTTGATTCTGAAACATA
1 GCCTATCTAGGTCTTCAGGCTCTTAATAGATGCAATCTGATTCTGAAACATA
14749827 G
1 G
14749828 TGTTCTGTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (52 bp):
GCCTATCTAGGTCTTCAGGCTCTTAATAGATGCAATCTGATTCTGAAACATA
Found at i:14753779 original size:10 final size:10
Alignment explanation
Indices: 14753764--14753789 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14753754 TGTGTGTAAA
14753764 GAAAAAAAAG
1 GAAAAAAAAG
14753774 GAAAAAAAAG
1 GAAAAAAAAG
14753784 GAAAAA
1 GAAAAA
14753790 TATAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAG
Found at i:14757294 original size:60 final size:60
Alignment explanation
Indices: 14757196--14757311 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
14757186 TTGAGAAGTT
* * * * * * *
14757196 AGTTTAGTTGGCACTCAAATTTTTAGCCTAATTTAGCTGGCA-TCGATGAGATTTAAGCCC
1 AGTTTAGCTAGCACCCAAAATTTAAGCATAATTCAGCTGGCACT-GATGAGATTTAAGCCC
*
14757256 AGTTTAGCTAGCACCCAAAATTTAAGCATAATTCAGCTGGTACTGATGAGATTTAA
1 AGTTTAGCTAGCACCCAAAATTTAAGCATAATTCAGCTGGCACTGATGAGATTTAA
14757312 AGTAGTTTAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
60 46 0.98
61 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (60 bp):
AGTTTAGCTAGCACCCAAAATTTAAGCATAATTCAGCTGGCACTGATGAGATTTAAGCCC
Found at i:14757782 original size:84 final size:84
Alignment explanation
Indices: 14757671--14757854 Score: 183
Period size: 85 Copynumber: 2.2 Consensus size: 84
14757661 AGGAGTCGAT
* * ** * *
14757671 ATTTATAAGACCTCCGAGAGTAATCTCTAAGTCT-TTCAAG-CAAGATTCATAAGTTTTTCAAGC
1 ATTTATAAGACCT-CTAGAATAATCTCTAAGT-TGGCCAAGTCAAGATTCATAAGTCTTCCAAGC
** * **
14757734 TGTATTTTTTTTAGTGTCAAG
64 TAAATCTACTTTAGTGTCAAG
* * ***
14757755 ATTTATAAGACCTCTAGACATAGTCTCTATGTTGGCCAAGTGGGGATTCATAAGTCTTCCAAGCT
1 ATTTATAAGACCTCTAGA-ATAATCTCTAAGTTGGCCAAGTCAAGATTCATAAGTCTTCCAAGCT
14757820 AAATCTACTTTAGTGTCAAG
65 AAATCTACTTTAGTGTCAAG
14757840 ATTTATAAGACCTCT
1 ATTTATAAGACCTCT
14757855 GGGTATAACC
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
83 5 0.06
84 27 0.33
85 49 0.60
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (84 bp):
ATTTATAAGACCTCTAGAATAATCTCTAAGTTGGCCAAGTCAAGATTCATAAGTCTTCCAAGCTA
AATCTACTTTAGTGTCAAG
Found at i:14758048 original size:26 final size:25
Alignment explanation
Indices: 14758007--14758075 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
14757997 CAAGAATTCA
* *
14758007 AAAAAATCAAATATTCAAAAAAATCC
1 AAAAAATAAAAAATTCAAAAAAA-CC
* *
14758033 AAAAAATAAAAAATTC-AAGAAAGC
1 AAAAAATAAAAAATTCAAAAAAACC
*
14758057 AAAAAAAAAAAAAGTTCAA
1 AAAAAATAAAAAA-TTCAA
14758076 GAACATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 13 0.36
25 8 0.22
26 15 0.42
ACGTcount: A:0.71, C:0.10, G:0.04, T:0.14
Consensus pattern (25 bp):
AAAAAATAAAAAATTCAAAAAAACC
Found at i:14758059 original size:24 final size:25
Alignment explanation
Indices: 14758032--14758090 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 25
14758022 CAAAAAAATC
*
14758032 CAAAAAATAAAAAA-TTCAAGAAAG
1 CAAAAAAAAAAAAAGTTCAAGAAAG
14758056 CAAAAAAAAAAAAAGTTCAAG-AA-
1 CAAAAAAAAAAAAAGTTCAAGAAAG
*
14758079 CATAAAAAAAAA
1 CAAAAAAAAAAA
14758091 GTTCAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 11 0.34
24 15 0.47
25 6 0.19
ACGTcount: A:0.75, C:0.08, G:0.07, T:0.10
Consensus pattern (25 bp):
CAAAAAAAAAAAAAGTTCAAGAAAG
Found at i:14758068 original size:25 final size:23
Alignment explanation
Indices: 14758033--14758090 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
14758023 AAAAAAATCC
*
14758033 AAAAAATAAAAAATTCAAGAAAGCA
1 AAAAAAAAAAAAATTCAAG-AA-CA
*
14758058 AAAAAAAAAAAAGTTCAAGAACA
1 AAAAAAAAAAAAATTCAAGAACA
*
14758081 TAAAAAAAAA
1 AAAAAAAAAA
14758091 GTTCAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 11 0.37
24 2 0.07
25 17 0.57
ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10
Consensus pattern (23 bp):
AAAAAAAAAAAAATTCAAGAACA
Found at i:14758107 original size:21 final size:21
Alignment explanation
Indices: 14758057--14758112 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
14758047 TCAAGAAAGC
14758057 AAAA-AAAAAAAAAGTTCAAG
1 AAAATAAAAAAAAAGTTCAAG
*
14758077 AACATAAAAAAAAAGTTCAA-
1 AAAATAAAAAAAAAGTTCAAG
14758097 AAAATAGAAAAGAAAA
1 AAAATA-AAAA-AAAA
14758113 AAAAACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.26
21 19 0.61
22 4 0.13
ACGTcount: A:0.75, C:0.05, G:0.09, T:0.11
Consensus pattern (21 bp):
AAAATAAAAAAAAAGTTCAAG
Found at i:14760571 original size:11 final size:11
Alignment explanation
Indices: 14760555--14760594 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
14760545 TATTCTTGCA
14760555 TTTCATAGCAT
1 TTTCATAGCAT
14760566 TTTCATCA-CAT
1 TTTCAT-AGCAT
*
14760577 TTTCATGGCAT
1 TTTCATAGCAT
14760588 TTTCATA
1 TTTCATA
14760595 TTTGCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 24 0.96
12 1 0.04
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (11 bp):
TTTCATAGCAT
Found at i:14763274 original size:120 final size:125
Alignment explanation
Indices: 14763054--14763276 Score: 285
Period size: 126 Copynumber: 1.8 Consensus size: 125
14763044 GTATATGTGA
* * * * *
14763054 ATTATTTCATTTGCTTAGGGAGAATCTTTGGCTTTTCAATTTTGTACATAGCTGTGAATATGAAA
1 ATTATTCCATTTGCTTAGGGACAATCTTTGCCTTTCCAATTTAGTACATAGCTGTGAATATGAAA
* **
14763119 TCTCGATGCTACTATGTATTGTATACATGTATTTGCATTCATGCAAACATTTTTGTATATAC
66 TCTC-AT-CTACTATGCATTACATACATGTATTTGCATTCATGCAAACATTTTTGTATATAC
* * * *
14763181 ATTATTCCATTTGTTTAGGG-CAATCTTTGCCTTTCCTATTTAGTATATAGTTGTGAATATG-AA
1 ATTATTCCATTTGCTTAGGGACAATCTTTGCCTTTCCAATTTAGTACATAGCTGTGAATATGAAA
14763244 T-TC-T-TACTATGCATTACATACATGTATTTGCAT
66 TCTCATCTACTATGCATTACATACATGTATTTGCAT
14763277 ATACATACAT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
120 26 0.31
122 1 0.01
124 2 0.02
125 3 0.04
126 34 0.40
127 18 0.21
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (125 bp):
ATTATTCCATTTGCTTAGGGACAATCTTTGCCTTTCCAATTTAGTACATAGCTGTGAATATGAAA
TCTCATCTACTATGCATTACATACATGTATTTGCATTCATGCAAACATTTTTGTATATAC
Found at i:14763558 original size:138 final size:138
Alignment explanation
Indices: 14763158--14763862 Score: 631
Period size: 130 Copynumber: 5.2 Consensus size: 138
14763148 TATTTGCATT
* * * * * * ** * *
14763158 CATGCAAACATTTTTGTATATACATTATTCCATTTGTTTAGG-GCAATCTTTGCCTTTCCTATTT
1 CATGTAAACATTTTTGTATGTTCATTATTTCATTAGCTT-GGAAAAATCTTTGCCTTTTCAATTT
* * * * *
14763222 AGTATATAGTTGTGAATATGAATTC------TTACTATGCATTACATACATGTATTTGCATATAC
65 TGTACATAGTTTTGAATATGAATTCTTGTTTTTACTATGTATTGCATACATGTATTTGCATATAC
**
14763281 A--TACATC
130 ATTTTTATC
* *
14763288 CATGTAAACATTTTT-TATGTACATTATTTCATTTA-TTTGGAAAAATCTTTGCCTTTTCAATTT
1 CATGTAAACATTTTTGTATGTTCATTATTTCA-TTAGCTTGGAAAAATCTTTGCCTTTTCAATTT
* * * *
14763351 TATACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGTATACATGTATTTGCATATG
65 TGTACATAGTTTTGAATATGAATTCTTGTTTTT-ACTATGTATTGCATACATGTATTTGCATATA
14763416 CATTTTTATC
129 CATTTTTATC
* * *
14763426 GATATAAACATTTTTGTATGTTCATTATTTTATTAGCTTGGAAAAATCTTTGCCTTTTCAATTTT
1 CATGTAAACATTTTTGTATGTTCATTATTTCATTAGCTTGGAAAAATCTTTGCCTTTTCAATTTT
* * *
14763491 GTACATAGTTTTGGA-ATGAATTTTTGTTTTTCACTATGTATTGCACACATGTATTTGCATATAC
66 GTACATAGTTTTGAATATGAATTCTTGTTTTT-ACTATGTATTGCATACATGTATTTGCATATAC
*
14763555 ATTTGTAT-
130 ATTTTTATC
* * * * * *
14763563 C---T----ATTTTTATAT-TTACATTATTTTATTGGCTTAGAAGAATCTTTGCATTTTCAATTT
1 CATGTAAACATTTTTGTATGTT-CATTATTTCATTAGCTTGGAAAAATCTTTGCCTTTTCAATTT
* * * * * * *
14763620 TGTACATAGTTGTGAATATGAATTCTTG-TTGT--TAT-TA-TGCAT-TATATACTTGTATATAA
65 TGTACATAGTTTTGAATATGAATTCTTGTTTTTACTATGTATTGCATACATGTATTTGCATATAC
14763679 ATTTTTATC
130 ATTTTTATC
** * * * *
14763688 CATGTAAACATTTTTGTACATAT-ATTATATCATTTGTTTGGAAGCAATCTTTGCCTTTTCAATT
1 CATGTAAACATTTTTGTATGT-TCATTATTTCATTAGCTTGGAA-AAATCTTTGCCTTTTCAATT
*
14763752 TTGTACATAGTTTTGAATATGAATTCCTT-TTGTTACTATGTATTGCATACATGTATTTGCATAT
64 TTGTACATAGTTTTGAATATGAATT-CTTGTTTTTACTATGTATTGCATACATGTATTTGCATAT
14763816 ACAATTTTTCATC
128 AC-ATTTTT-ATC
* * * *
14763829 CATGTAAATATCTTTGTATGTACATTGTTTCATT
1 CATGTAAACATTTTTGTATGTTCATTATTTCATT
14763863 TGTTTGGGAC
Statistics
Matches: 468, Mismatches: 71, Indels: 61
0.78 0.12 0.10
Matches are distributed among these distances:
124 19 0.04
125 5 0.01
126 2 0.00
127 3 0.01
128 3 0.01
129 57 0.12
130 80 0.17
131 10 0.02
132 23 0.05
133 43 0.09
134 7 0.01
135 2 0.00
136 32 0.07
137 2 0.00
138 77 0.16
139 68 0.15
140 6 0.01
141 29 0.06
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (138 bp):
CATGTAAACATTTTTGTATGTTCATTATTTCATTAGCTTGGAAAAATCTTTGCCTTTTCAATTTT
GTACATAGTTTTGAATATGAATTCTTGTTTTTACTATGTATTGCATACATGTATTTGCATATACA
TTTTTATC
Found at i:14763630 original size:130 final size:133
Alignment explanation
Indices: 14762941--14763818 Score: 472
Period size: 139 Copynumber: 6.6 Consensus size: 133
14762931 GGGGACAATT
* * * * * * *
14762941 TTTGTCTTTTTAATTTTGTACATAATTTTGAATATGAATTCTTGTTGTT-ACTATGTATGGCATA
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* * * ** * *
14763005 TATGTATTTGCATATACATTTTTATCCATGAAAATATCTGTATATGTGAATTATTTCATTTGCTT
66 CATGTATTTGCATATACATTTGTAT-CAT---AAT-T-TTTATATGTTCATTATTTTATTAGCTT
* *
14763070 AGGGAGAATC
125 A-GAAAAATC
* * * * * * * ** * *
14763080 TTTGGCTTTTCAATTTTGTACATAGCTGTGAATATGAAATCTCGATGCT-ACTATGTATTGTATA
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* * * * ** * * ***
14763144 CATGTATTTGCAT-T-CA--TG---CAAACATTTTTGTATATACATTATTCCATTTGTTTAGGGC
66 CATGTATTTGCATATACATTTGTATCATA-ATTTTTATATGTTCATTATTTTATTAGCTTAGAAA
14763202 AATC
130 AATC
* * * * * * * * *
14763206 TTTGCCTTTCCTATTTAGTATATAGTTGTGAATATGAATTC------TT-ACTATGCATTACATA
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* ** * * * * * *
14763264 CATGTATTTGCATATACATACATCCATGTAAACATTTTT-TATGTACATTATTTCATTTA-TTTG
66 CATGTATTTGCATATACAT--TTGTAT-CATA-ATTTTTATATGTTCATTATTTTA-TTAGCTTA
14763327 GAAAAATC
126 GAAAAATC
* * *
14763335 TTTGCCTTTTCAATTTTATACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGTATA
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* * *
14763400 CATGTATTTGCATATGCATTTTTATCGATATAAACATTTTTGTATGTTCATTATTTTATTAGCTT
66 CATGTATTTGCATATACATTTGTATC---AT--A-ATTTTTATATGTTCATTATTTTATTAGCTT
*
14763465 GGAAAAATC
125 AGAAAAATC
*
14763474 TTTGCCTTTTCAATTTTGTACATAGTTTTGGA-ATGAATTTTTGTTTTTCACTATGTATTGCACA
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* *
14763538 CATGTATTTGCATATACATTTGTATC-T-ATTTTTATAT-TTACATTATTTTATTGGCTTAGAAG
66 CATGTATTTGCATATACATTTGTATCATAATTTTTATATGTT-CATTATTTTATTAGCTTAGAAA
14763600 AATC
130 AATC
* * * * *
14763604 TTTGCATTTTCAATTTTGTACATAGTTGTGAATATGAATTCTTG-TTGT---TAT-TA-TGCA-T
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
* * * * * * ** * * *
14763662 TATATACTTGTATATAAATTTTTATCCATGTAAACATTT-T-TGTACATATATTATATCATTTGT
66 CATGTATTTGCATATACATTTGTAT-CA--T-AATTTTTATATGTTCAT-TATT-T-T-ATTAGC
* *
14763725 TTGGAAGCAATC
123 TTAGAA-AAATC
* * *
14763737 TTTGCCTTTTCAATTTTGTACATAGTTTTGAATATGAATTCCTT-TTGTT-ACTATGTATTGCAT
1 TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATT-CTTGTTTTTCACTATGTATTGCAC
14763800 ACATGTATTTGCATATACA
65 ACATGTATTTGCATATACA
14763819 ATTTTTCATC
Statistics
Matches: 591, Mismatches: 101, Indels: 94
0.75 0.13 0.12
Matches are distributed among these distances:
120 26 0.04
121 1 0.00
122 2 0.00
124 19 0.03
125 5 0.01
126 43 0.07
127 24 0.04
128 7 0.01
129 66 0.11
130 81 0.14
131 13 0.02
132 9 0.02
133 42 0.07
134 9 0.02
135 3 0.01
136 34 0.06
137 4 0.01
138 69 0.12
139 134 0.23
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.48
Consensus pattern (133 bp):
TTTGCCTTTTCAATTTTGTACATAGTTTTGGATATGAATTCTTGTTTTTCACTATGTATTGCACA
CATGTATTTGCATATACATTTGTATCATAATTTTTATATGTTCATTATTTTATTAGCTTAGAAAA
ATC
Found at i:14765375 original size:10 final size:10
Alignment explanation
Indices: 14765360--14765389 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14765350 AGAATAGTCT
14765360 AAAAAAAAGA
1 AAAAAAAAGA
14765370 AAAAAAAAGA
1 AAAAAAAAGA
*
14765380 AAAAACAAGA
1 AAAAAAAAGA
14765390 TTAAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:14766671 original size:33 final size:33
Alignment explanation
Indices: 14766633--14766714 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
14766623 ATGAAAGAAA
14766633 AAGGAAATTTTTTAGAAAATATGGTTCTGAGAT
1 AAGGAAATTTTTTAGAAAATATGGTTCTGAGAT
* *
14766666 GAGGAAATGTTTTAGAAAATATGGTTCTGAGAT
1 AAGGAAATTTTTTAGAAAATATGGTTCTGAGAT
*
14766699 AAGAAAATTTTTTAGA
1 AAGGAAATTTTTTAGA
14766715 TAAGTTTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.40, C:0.02, G:0.22, T:0.35
Consensus pattern (33 bp):
AAGGAAATTTTTTAGAAAATATGGTTCTGAGAT
Found at i:14766984 original size:83 final size:84
Alignment explanation
Indices: 14766846--14767029 Score: 239
Period size: 83 Copynumber: 2.2 Consensus size: 84
14766836 AGAGTGTTCA
* * * * * *
14766846 TAAGTGTTGAGATTTATGAGACTTCGAGTGTAATCTCTAAGTTATTCGGGCAAGATTCATAAG-T
1 TAAGTTTTGAGATTTGTAAGACTCCGAGTATAATCTCTAAGTTATTCGAGCAAGATTCATAAGTT
*
14766910 TTTCGAGCTGAATCTA-TT
66 TTTCAAGCTGAATCTATTT
* *
14766928 TAAGTTTTGAGATTTGTAAGACCTCCGAGTATAGTCTCTAAGTTCTTCGAGCAAGATTCATAAGT
1 TAAGTTTTGAGATTTGTAAGA-CTCCGAGTATAATCTCTAAGTTATTCGAGCAAGATTCATAAGT
14766993 TTTTCAAGCTGAATCTATTT
65 TTTTCAAGCTGAATCTATTT
* *
14767013 TAA-TTTCGAGAGTTGTA
1 TAAGTTTTGAGATTTGTA
14767030 TCACCTTTGG
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
82 18 0.20
83 37 0.42
84 28 0.32
85 5 0.06
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (84 bp):
TAAGTTTTGAGATTTGTAAGACTCCGAGTATAATCTCTAAGTTATTCGAGCAAGATTCATAAGTT
TTTCAAGCTGAATCTATTT
Found at i:14767046 original size:84 final size:83
Alignment explanation
Indices: 14766879--14767054 Score: 228
Period size: 84 Copynumber: 2.1 Consensus size: 83
14766869 TCGAGTGTAA
* * * *
14766879 TCTCTAAGTTATTCGGGCAAGATTCATAAGTTTTCGAGCTGAATCTATTTAAGTTTTGAGATTTG
1 TCTCTAAGTTATTCGAGCAAGATTCATAAGTTTTCAAGCTGAATCTATTTAAGTTTCGAGAGTTG
* *
14766944 TAAGACCTCCGAGTATAG
66 TAACACCTCCGAGCATAG
*
14766962 TCTCTAAGTTCTTCGAGCAAGATTCATAAGTTTTTCAAGCTGAATCTATTTTAA-TTTCGAGAGT
1 TCTCTAAGTTATTCGAGCAAGATTCATAAG-TTTTCAAGCTGAATCTA-TTTAAGTTTCGAGAGT
* ** *
14767026 TGTATCACCTTTGGGCATAG
64 TGTAACACCTCCGAGCATAG
14767046 TCTCTAAGT
1 TCTCTAAGT
14767055 ACACCAAGCA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
83 28 0.35
84 47 0.59
85 5 0.06
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (83 bp):
TCTCTAAGTTATTCGAGCAAGATTCATAAGTTTTCAAGCTGAATCTATTTAAGTTTCGAGAGTTG
TAACACCTCCGAGCATAG
Found at i:14767525 original size:22 final size:22
Alignment explanation
Indices: 14767499--14767723 Score: 166
Period size: 22 Copynumber: 10.2 Consensus size: 22
14767489 AATGATTTAT
*
14767499 AAGACCTCTAGGTATAATCTCC
1 AAGACCTCTAGGCATAATCTCC
*
14767521 AAGACCTTTAGGCATAATCTCC
1 AAGACCTCTAGGCATAATCTCC
* * * *
14767543 AAGACCTCTAAGTATAATTTCT
1 AAGACCTCTAGGCATAATCTCC
*
14767565 AAGACTTCTAGGCATAATCTCC
1 AAGACCTCTAGGCATAATCTCC
* * * * **
14767587 AAGACCTTTGGGCATTATTTGT
1 AAGACCTCTAGGCATAATCTCC
* *
14767609 AAGACCT-TCAAGTATAATCTCC
1 AAGACCTCT-AGGCATAATCTCC
* * * **
14767631 AAGA-TTCTTGGGCATAATTTGT
1 AAGACCTC-TAGGCATAATCTCC
14767653 AAGACCTCTAGGCATAATCTCC
1 AAGACCTCTAGGCATAATCTCC
* * **
14767675 AAGGCCTCCAAACATAATCTCC
1 AAGACCTCTAGGCATAATCTCC
* * * *
14767697 AAGACCTCTGGGTATGATTTCC
1 AAGACCTCTAGGCATAATCTCC
14767719 AAGAC
1 AAGAC
14767724 TTTCAGGTAT
Statistics
Matches: 149, Mismatches: 50, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
21 2 0.01
22 144 0.97
23 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (22 bp):
AAGACCTCTAGGCATAATCTCC
Found at i:14767576 original size:66 final size:66
Alignment explanation
Indices: 14767499--14767723 Score: 211
Period size: 66 Copynumber: 3.4 Consensus size: 66
14767489 AATGATTTAT
* *
14767499 AAGACCTCTAGGTATAATCTCCAAGACCTTTAGGCATAATCTCCAAGACCTCTAAGTATAATTTC
1 AAGACCTCTAGGCATAATCTCCAAGACCTTTAGGCATAATCTCCAAGACCTCTAAGTATAATCTC
*
14767564 T
66 C
* * * * **
14767565 AAGACTTCTAGGCATAATCTCCAAGACCTTTGGGCATTATTTGTAAGACCT-TCAAGTATAATCT
1 AAGACCTCTAGGCATAATCTCCAAGACCTTTAGGCATAATCTCCAAGACCTCT-AAGTATAATCT
14767629 CC
65 CC
* * * ** * * * **
14767631 AAGA-TTCTTGGGCATAATTTGTAAGACCTCTAGGCATAATCTCCAAGGCCTCCAAACATAATCT
1 AAGACCTC-TAGGCATAATCTCCAAGACCTTTAGGCATAATCTCCAAGACCTCTAAGTATAATCT
14767695 CC
65 CC
* * * *
14767697 AAGACCTCTGGGTATGATTTCCAAGAC
1 AAGACCTCTAGGCATAATCTCCAAGAC
14767724 TTTCAGGTAT
Statistics
Matches: 127, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
65 4 0.03
66 121 0.95
67 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (66 bp):
AAGACCTCTAGGCATAATCTCCAAGACCTTTAGGCATAATCTCCAAGACCTCTAAGTATAATCTC
C
Found at i:14767612 original size:44 final size:45
Alignment explanation
Indices: 14767521--14767837 Score: 199
Period size: 44 Copynumber: 7.2 Consensus size: 45
14767511 TATAATCTCC
* ** * *
14767521 AAGACCTT-TAGGCATAATCTCCAAGACCTCTAAGTATAATTTCT
1 AAGACCTTCTAGGCATAATCTCCAAGACCTTTGGGCATAATTTGT
*
14767565 AAGA-CTTCTAGGCATAATCTCCAAGACCTTTGGGCATTATTTGT
1 AAGACCTTCTAGGCATAATCTCCAAGACCTTTGGGCATAATTTGT
* * *
14767609 AAGACCTTC-AAGTATAATCTCCAAGA-TTCTTGGGCATAATTTGT
1 AAGACCTTCTAGGCATAATCTCCAAGACCT-TTGGGCATAATTTGT
* ***** * **
14767653 AAGACC-TCTAGGCATAATCTCCAAGGCCTCCAAACATAATCTCC
1 AAGACCTTCTAGGCATAATCTCCAAGACCTTTGGGCATAATTTGT
* * * * * * *
14767697 AAGACC-TCTGGGTATGATTTCCAAGA-CTTTCAGGTATGATTTGT
1 AAGACCTTCTAGGCATAATCTCCAAGACCTTT-GGGCATAATTTGT
** * * *
14767741 AAGACC-TCTAGGCATAA-CTTTAAAAACTTTTGGGCATAATTTCT
1 AAGACCTTCTAGGCATAATC-TCCAAGACCTTTGGGCATAATTTGT
* ** *
14767785 AAGATC-TCCGGGCATAATCTCTAAGACCTTT--GCATATGATTTGT
1 AAGACCTTCTAGGCATAATCTCCAAGACCTTTGGGCATA--ATTTGT
14767829 AAGACCTTC
1 AAGACCTTC
14767838 GAGTATAATA
Statistics
Matches: 204, Mismatches: 57, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
42 5 0.02
43 8 0.04
44 180 0.88
45 11 0.05
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
AAGACCTTCTAGGCATAATCTCCAAGACCTTTGGGCATAATTTGT
Found at i:14769892 original size:13 final size:14
Alignment explanation
Indices: 14769874--14769902 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14769864 GCATTATGGT
14769874 ATGATTTAT-TTGC
1 ATGATTTATCTTGC
14769887 ATGATTTATCTTGC
1 ATGATTTATCTTGC
14769901 AT
1 AT
14769903 ATTATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (14 bp):
ATGATTTATCTTGC
Found at i:14770029 original size:20 final size:19
Alignment explanation
Indices: 14769981--14770029 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
14769971 TTGCTTGATC
14769981 ATTAAATATTTGCAAGATT
1 ATTAAATATTTGCAAGATT
* *
14770000 ATTAATATATTTGTATGATAT
1 ATTAA-ATATTTGCAAGAT-T
14770021 ATTAAATAT
1 ATTAAATAT
14770030 GCTTGATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 5 0.19
20 15 0.58
21 6 0.23
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (19 bp):
ATTAAATATTTGCAAGATT
Found at i:14770057 original size:19 final size:18
Alignment explanation
Indices: 14769986--14770057 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 18
14769976 TGATCATTAA
*
14769986 ATATTTGCAAGATTATTAAT
1 ATATTTGCATGATTATT--T
*
14770006 ATATTTGTATGA-TATATT
1 ATATTTGCATGATTAT-TT
* * *
14770024 AAATATGCTTGATTATGTT
1 ATATTTGCATGATTAT-TT
14770043 ATATTTGCATGATTA
1 ATATTTGCATGATTA
14770058 ATATTATACA
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
18 9 0.22
19 20 0.50
20 11 0.28
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.49
Consensus pattern (18 bp):
ATATTTGCATGATTATTT
Found at i:14770127 original size:20 final size:20
Alignment explanation
Indices: 14770081--14770135 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
14770071 ATGTTTAATC
* * *
14770081 TATTGCATGGTAATTAATAT
1 TATTGCATGATATTTTATAT
14770101 T-TTGCATGATATTTTATAT
1 TATTGCATGATATTTTATAT
*
14770120 TATTGCATGATGTTTT
1 TATTGCATGATATTTT
14770136 TGCATGGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (20 bp):
TATTGCATGATATTTTATAT
Found at i:14770897 original size:7 final size:7
Alignment explanation
Indices: 14770868--14770974 Score: 74
Period size: 7 Copynumber: 15.1 Consensus size: 7
14770858 CCAAATTTGG
14770868 AACCTAA
1 AACCTAA
* *
14770875 ATCTTAA
1 AACCTAA
14770882 AACCGTAA
1 AACC-TAA
14770890 AACCT-A
1 AACCTAA
14770896 AACCTAA
1 AACCTAA
***
14770903 ATTTTGAA
1 AACCT-AA
*
14770911 ACCCTAA
1 AACCTAA
14770918 AACCT-A
1 AACCTAA
14770924 AACCTAA
1 AACCTAA
14770931 AATCCTAA
1 AA-CCTAA
*
14770939 ACCCTAA
1 AACCTAA
*
14770946 AATCTAA
1 AACCTAA
*
14770953 ACCCTAA
1 AACCTAA
*
14770960 ACCCTAA
1 AACCTAA
*
14770967 ACCCTAA
1 AACCTAA
14770974 A
1 A
14770975 CTTTCACCCA
Statistics
Matches: 79, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
6 12 0.15
7 50 0.63
8 17 0.22
ACGTcount: A:0.49, C:0.29, G:0.02, T:0.21
Consensus pattern (7 bp):
AACCTAA
Found at i:14770912 original size:28 final size:28
Alignment explanation
Indices: 14770868--14770974 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 28
14770858 CCAAATTTGG
*
14770868 AACCTAAATCTTAAAACCGTAAAACCTA
1 AACCTAAATCTTAAAACCCTAAAACCTA
* *
14770896 AACCTAAATTTTGAAACCCTAAAACCTA
1 AACCTAAATCTTAAAACCCTAAAACCTA
* *
14770924 AACCTAAAATCCT-AAACCCTAAAATCTA
1 AACCT-AAATCTTAAAACCCTAAAACCTA
* *
14770952 AACCCTAAACCCT-AAACCCTAAA
1 AA-CCTAAATCTTAAAACCCTAAA
14770975 CTTTCACCCA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 62 0.89
29 8 0.11
ACGTcount: A:0.49, C:0.29, G:0.02, T:0.21
Consensus pattern (28 bp):
AACCTAAATCTTAAAACCCTAAAACCTA
Found at i:14770975 original size:7 final size:7
Alignment explanation
Indices: 14770909--14770975 Score: 82
Period size: 7 Copynumber: 9.6 Consensus size: 7
14770899 CTAAATTTTG
14770909 AAACCCT
1 AAACCCT
*
14770916 AAAACCT
1 AAACCCT
14770923 AAA-CCT
1 AAACCCT
*
14770929 AAAATCCT
1 -AAACCCT
14770937 AAACCCT
1 AAACCCT
**
14770944 AAAATCT
1 AAACCCT
14770951 AAACCCT
1 AAACCCT
14770958 AAACCCT
1 AAACCCT
14770965 AAACCCT
1 AAACCCT
14770972 AAAC
1 AAAC
14770976 TTTCACCCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
6 3 0.06
7 46 0.88
8 3 0.06
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:14770975 original size:14 final size:14
Alignment explanation
Indices: 14770881--14770974 Score: 102
Period size: 14 Copynumber: 6.7 Consensus size: 14
14770871 CTAAATCTTA
*
14770881 AAACCGTAAAACCT
1 AAACCCTAAAACCT
***
14770895 AAA-CCTAAATTTT
1 AAACCCTAAAACCT
14770908 GAAACCCTAAAACCT
1 -AAACCCTAAAACCT
14770923 AAA-CCTAAAATCCT
1 AAACCCTAAAA-CCT
*
14770937 AAACCCTAAAATCT
1 AAACCCTAAAACCT
*
14770951 AAACCCTAAACCCT
1 AAACCCTAAAACCT
14770965 AAACCCTAAA
1 AAACCCTAAA
14770975 CTTTCACCCA
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
13 13 0.20
14 39 0.59
15 14 0.21
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (14 bp):
AAACCCTAAAACCT
Done.