Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 69 of 117
Found at i:14780286 original size:22 final size:22
Alignment explanation
Indices: 14780248--14780323 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
14780238 TTATATCTAA
* *
14780248 ATATACATAT-ATCAAAATCATT
1 ATATACATATCCT-AAAATCACT
14780270 ATATACATATCCTAAAAGT-ACT
1 ATATACATATCCTAAAA-TCACT
* *
14780292 ATGTACATATCCTAAAAGCACT
1 ATATACATATCCTAAAATCACT
*
14780314 ATGTACATAT
1 ATATACATAT
14780324 TTCAAAAGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
22 45 0.96
23 2 0.04
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (22 bp):
ATATACATATCCTAAAATCACT
Found at i:14780338 original size:22 final size:22
Alignment explanation
Indices: 14780273--14780323 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
14780263 AATCATTATA
*
14780273 TACATATCCTAAAAGTACTATG
1 TACATATCCTAAAAGCACTATG
14780295 TACATATCCTAAAAGCACTATG
1 TACATATCCTAAAAGCACTATG
14780317 TACATAT
1 TACATAT
14780324 TTCAAAAGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (22 bp):
TACATATCCTAAAAGCACTATG
Found at i:14782577 original size:112 final size:112
Alignment explanation
Indices: 14782374--14782589 Score: 272
Period size: 112 Copynumber: 1.9 Consensus size: 112
14782364 GATTATGCCT
* ** * * * *
14782374 GGTCCACTACTAATCTCCGTGGATTGCCAATGTCATTCCTTAGAGATAGACTTATCTCTACACTA
1 GGTCCACTACTAATCTCCGTAGATCACCAATCTCATTCATTAGAAATAAACTTATCTCTACACTA
* **
14782439 AATAAAGGGAAGCATGCAATCATGACAAGTGGCAAGATCTTGTGCTA
66 AATAAAGAGAAGCACACAATCATGACAAGTGGCAAGATCTTGTGCTA
* * *
14782486 GGTCCACTACTAATCTCCTTAGATCACCAATCTCATTCATTGGAAATAAACTTGTCTCTACACTA
1 GGTCCACTACTAATCTCCGTAGATCACCAATCTCATTCATTAGAAATAAACTTATCTCTACACTA
* * *
14782551 AATATAA-AGAAGCACACGATCGTGACAAGTGGTAAGATC
66 AATA-AAGAGAAGCACACAATCATGACAAGTGGCAAGATC
14782590 CTAACCAACT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 85 0.98
113 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (112 bp):
GGTCCACTACTAATCTCCGTAGATCACCAATCTCATTCATTAGAAATAAACTTATCTCTACACTA
AATAAAGAGAAGCACACAATCATGACAAGTGGCAAGATCTTGTGCTA
Found at i:14784581 original size:20 final size:19
Alignment explanation
Indices: 14784556--14784681 Score: 102
Period size: 18 Copynumber: 6.7 Consensus size: 19
14784546 TGCAAGAATG
*
14784556 TCATGCAAATGTATTAATTA
1 TCATGCAAATATATTAA-TA
*
14784576 TCATGC-AATA-A-TAACAA
1 TCATGCAAATATATTAA-TA
* *
14784593 TCATGTAAATATA-TAACA
1 TCATGCAAATATATTAATA
*
14784611 TCATGTAAATATATTAATTA
1 TCATGCAAATATATTAA-TA
*
14784631 TCATGC-AATAGTATAAAATA
1 TCATGCAAATA-TAT-TAATA
*
14784651 CCATGCAAATATA-TAATA
1 TCATGCAAATATATTAATA
14784669 TCATGCAAATATA
1 TCATGCAAATATA
14784682 ATCAAACAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
17 9 0.10
18 35 0.40
19 14 0.16
20 24 0.27
21 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (19 bp):
TCATGCAAATATATTAATA
Found at i:14784626 original size:55 final size:56
Alignment explanation
Indices: 14784556--14784681 Score: 175
Period size: 55 Copynumber: 2.2 Consensus size: 56
14784546 TGCAAGAATG
* *
14784556 TCATGCAAATGTATTAATTATCATGCAATA-ATAACAAT-CATGTAAATATATAACA
1 TCATGCAAATATATTAATTATCATGCAATAGATAA-AATACATGCAAATATATAACA
* *
14784611 TCATGTAAATATATTAATTATCATGCAATAGTATAAAATACCATGCAAATATATAATA
1 TCATGCAAATATATTAATTATCATGCAATAG-ATAAAATA-CATGCAAATATATAACA
14784669 TCATGCAAATATA
1 TCATGCAAATATA
14784682 ATCAAACAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
55 28 0.45
56 3 0.05
57 4 0.06
58 27 0.44
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (56 bp):
TCATGCAAATATATTAATTATCATGCAATAGATAAAATACATGCAAATATATAACA
Found at i:14784635 original size:38 final size:36
Alignment explanation
Indices: 14784592--14784681 Score: 92
Period size: 38 Copynumber: 2.4 Consensus size: 36
14784582 AATAATAACA
* *
14784592 ATCATGTAAATATATAACAT-CATGTAAATATATTAATT
1 ATCATG-AAATATATAAAATACATGCAAATATA-TAA-T
*
14784630 ATCATGCAATAGTATAAAATACCATGCAAATATATAAT
1 ATCATGAAATA-TATAAAATA-CATGCAAATATATAAT
14784668 ATCATGCAAATATA
1 ATCATG-AAATATA
14784682 ATCAAACAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
37 4 0.09
38 22 0.50
39 7 0.16
40 11 0.25
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (36 bp):
ATCATGAAATATATAAAATACATGCAAATATATAAT
Found at i:14784714 original size:27 final size:26
Alignment explanation
Indices: 14784666--14784748 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 26
14784656 CAAATATATA
* *
14784666 ATATCATGCAAATAT-AATCAAACAAAT
1 ATATTATGCAATTATGAA-CAAA-AAAT
*
14784693 ATATTA-GTAATTATGTAACAAAAAAT
1 ATATTATGCAATTATG-AACAAAAAAT
14784719 A-ATTATGCAATTATGAACACAATAAAT
1 ATATTATGCAATTATGAACA-AA-AAAT
14784746 ATA
1 ATA
14784749 AAAATAGGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 8 0.17
26 21 0.46
27 14 0.30
28 3 0.07
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (26 bp):
ATATTATGCAATTATGAACAAAAAAT
Found at i:14785087 original size:32 final size:32
Alignment explanation
Indices: 14785049--14785218 Score: 163
Period size: 32 Copynumber: 5.4 Consensus size: 32
14785039 AATAAACATT
*
14785049 AATTAAATATATTAATAATCAAGCAAATATGC
1 AATTAAATATATTAATAATCAAGCAAACATGC
* * **
14785081 AATTAAATATGTT-ATCATGCAAATAAACATGC
1 AATTAAATATATTAATAAT-CAAGCAAACATGC
14785113 AATTAAATATA-TAATAAT---GCAAACATGC
1 AATTAAATATATTAATAATCAAGCAAACATGC
* * ** *
14785141 AACTAAATATATT-ATCATGCAAATAAACATGT
1 AATTAAATATATTAATAAT-CAAGCAAACATGC
* *
14785173 AATTAAGTATATTAATAATCATGCAAACATGC
1 AATTAAATATATTAATAATCAAGCAAACATGC
*
14785205 AATGAAATATATTA
1 AATTAAATATATTA
14785219 TCATGCAAAT
Statistics
Matches: 107, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
28 22 0.21
29 1 0.01
31 5 0.05
32 75 0.70
33 4 0.04
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.31
Consensus pattern (32 bp):
AATTAAATATATTAATAATCAAGCAAACATGC
Found at i:14785147 original size:28 final size:28
Alignment explanation
Indices: 14785105--14785163 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
14785095 TCATGCAAAT
*
14785105 AAACATGCAATTAAATATATAATAATGC
1 AAACATGCAACTAAATATATAATAATGC
* *
14785133 AAACATGCAACTAAATATATTATCATGC
1 AAACATGCAACTAAATATATAATAATGC
14785161 AAA
1 AAA
14785164 TAAACATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.14, G:0.07, T:0.27
Consensus pattern (28 bp):
AAACATGCAACTAAATATATAATAATGC
Found at i:14785148 original size:60 final size:59
Alignment explanation
Indices: 14785034--14785230 Score: 252
Period size: 64 Copynumber: 3.2 Consensus size: 59
14785024 ACACGCAATT
* *
14785034 ATGCAAATAAACAT-TAATTAAATATATTAATAATCAAGCAAATATGCAATTAAATATGTTATC
1 ATGCAAATAAACATGTAATTAAATATA-TAATAAT---GCAAACATGCAA-TAAATATATTATC
*
14785097 ATGCAAATAAACATGCAATTAAATATATAATAATGCAAACATGCAACTAAATATATTATC
1 ATGCAAATAAACATGTAATTAAATATATAATAATGCAAACATGCAA-TAAATATATTATC
*
14785157 ATGCAAATAAACATGTAATTAAGTATATTAATAATCATGCAAACATGCAATGAAATATATTATC
1 ATGCAAATAAACATGTAATTAA--ATA-T-ATAATAATGCAAACATGCAAT-AAATATATTATC
14785221 ATGCAAATAA
1 ATGCAAATAA
14785231 TAATATAAAT
Statistics
Matches: 122, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
60 44 0.36
62 3 0.02
63 23 0.19
64 52 0.43
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (59 bp):
ATGCAAATAAACATGTAATTAAATATATAATAATGCAAACATGCAATAAATATATTATC
Found at i:14785220 original size:64 final size:62
Alignment explanation
Indices: 14785034--14785230 Score: 276
Period size: 60 Copynumber: 3.2 Consensus size: 62
14785024 ACACGCAATT
* * *
14785034 ATGCAAATAAACAT-TAATTAAATATATTAATAATCAAGCAAATATGCAATTAAATATGTTATC
1 ATGCAAATAAACATGTAATT-AATATATTAATAATCATGCAAACATGCAA-TAAATATATTATC
* *
14785097 ATGCAAATAAACATGCAATTAA-ATA-T-ATAATAATGCAAACATGCAACTAAATATATTATC
1 ATGCAAATAAACATGTAATTAATATATTAATAATCATGCAAACATGCAA-TAAATATATTATC
14785157 ATGCAAATAAACATGTAATTAAGTATATTAATAATCATGCAAACATGCAATGAAATATATTATC
1 ATGCAAATAAACATGTAATTAA-TATATTAATAATCATGCAAACATGCAAT-AAATATATTATC
14785221 ATGCAAATAA
1 ATGCAAATAA
14785231 TAATATAAAT
Statistics
Matches: 120, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
60 50 0.42
61 1 0.01
62 6 0.05
63 18 0.15
64 45 0.38
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (62 bp):
ATGCAAATAAACATGTAATTAATATATTAATAATCATGCAAACATGCAATAAATATATTATC
Found at i:14785247 original size:21 final size:21
Alignment explanation
Indices: 14785218--14785304 Score: 72
Period size: 21 Copynumber: 4.2 Consensus size: 21
14785208 GAAATATATT
*
14785218 ATCATGCAAATAATAATATAA
1 ATCAAGCAAATAATAATATAA
* **
14785239 ATCAAGCAATTAATAACGTAA
1 ATCAAGCAAATAATAATATAA
* * *
14785260 AACAAGC-AATTA-AATGTATA
1 ATCAAGCAAATAATAATATA-A
14785280 AT-AATGCAAATAATAATATAA
1 ATCAA-GCAAATAATAATATAA
14785301 ATCA
1 ATCA
14785305 TGTAATAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
19 7 0.14
20 7 0.14
21 30 0.60
22 6 0.12
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.26
Consensus pattern (21 bp):
ATCAAGCAAATAATAATATAA
Found at i:14785251 original size:64 final size:63
Alignment explanation
Indices: 14785034--14785304 Score: 229
Period size: 64 Copynumber: 4.3 Consensus size: 63
14785024 ACACGCAATT
* * * * * *
14785034 ATGCAAATAAACAT-TAATTAAATATATTAATAATCAAGCAAATATGCAATTAAATATGTTATC
1 ATGCAAATAAACATATAAATCAAGA-ATTAATAATCATGCAAACATGCAATTAAATATATTATC
** * * *
14785097 ATGCAAATAAACAT-GCAAT-TA-AA-TATATAATAATGCAAACATGCAACTAAATATATTATC
1 ATGCAAATAAACATATAAATCAAGAATTA-ATAATCATGCAAACATGCAATTAAATATATTATC
* * *
14785157 ATGCAAATAAACATGT-AATTAAGTATATTAATAATCATGCAAACATGCAATGAAATATATTATC
1 ATGCAAATAAACATATAAATCAAG-A-ATTAATAATCATGCAAACATGCAATTAAATATATTATC
* * * * * *
14785221 ATGCAAATAATA-ATATAAATCAAGCAATTAATAA-CGT-AAAACAAGCAATTAAATGTATAATA
1 ATGCAAATAA-ACATATAAATCAAG-AATTAATAATCATGCAAACATGCAATTAAATATATTATC
14785283 ATGCAAATAATA-ATATAAATCA
1 ATGCAAATAA-ACATATAAATCA
14785305 TGTAATAAAT
Statistics
Matches: 175, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
59 2 0.01
60 47 0.27
61 2 0.01
62 42 0.24
63 19 0.11
64 53 0.30
65 10 0.06
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (63 bp):
ATGCAAATAAACATATAAATCAAGAATTAATAATCATGCAAACATGCAATTAAATATATTATC
Found at i:14785311 original size:20 final size:19
Alignment explanation
Indices: 14785290--14785402 Score: 70
Period size: 20 Copynumber: 5.8 Consensus size: 19
14785280 ATAATGCAAA
14785290 TAAT-AATATA-AATCATG
1 TAATAAATATATAATCATG
14785307 TAATAAATATATAATCATG
1 TAATAAATATATAATCATG
* * *
14785326 TAATTAACA-ATGTAGAACATAC
1 TAA-TAA-ATATATA-ATCAT-G
* *
14785348 AAATAAATATATAATCATCC
1 TAATAAATATATAATCAT-G
* * * *
14785368 AAATAATTATATAAAACAAG
1 TAATAAATATAT-AATCATG
14785388 TAATAAATATATAAT
1 TAATAAATATATAAT
14785403 TAATCATAAT
Statistics
Matches: 74, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
17 4 0.05
18 6 0.08
19 12 0.16
20 34 0.46
21 16 0.22
22 2 0.03
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (19 bp):
TAATAAATATATAATCATG
Found at i:14785339 original size:62 final size:61
Alignment explanation
Indices: 14785197--14785315 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
14785187 ATAATCATGC
* * * * * *
14785197 AAACATGCAATGAAATATATTATCATGCAAATAATAATATAAATCAAGCAATTAATAACGTA
1 AAACAAGCAATTAAATGTATAATAATGCAAATAATAATATAAATCAAGCAATAAATAAC-TA
* *
14785259 AAACAAGCAATTAAATGTATAATAATGCAAATAATAATATAAATCATGTAATAAATA
1 AAACAAGCAATTAAATGTATAATAATGCAAATAATAATATAAATCAAGCAATAAATA
14785316 TATAATCATG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (61 bp):
AAACAAGCAATTAAATGTATAATAATGCAAATAATAATATAAATCAAGCAATAAATAACTA
Found at i:14785361 original size:81 final size:81
Alignment explanation
Indices: 14785228--14785402 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 81
14785218 ATCATGCAAA
* * * *
14785228 TAAT-AATATA-AATCAAGCAATTAATAACGTAAAACAAGCAATTAAATGTATAATAATGCAAAT
1 TAATAAATATATAATCAAGCAATTAACAACGTAAAACAAGCAAATAAATATATAATAATCCAAAT
* *
14785291 AATAATATAAATCATG
66 AATAATATAAAACAAG
* * * * *
14785307 TAATAAATATATAATCATGTAATTAACAATGTAGAACATA-CAAATAAATATATAATCATCCAAA
1 TAATAAATATATAATCAAGCAATTAACAACGTAAAACA-AGCAAATAAATATATAATAATCCAAA
*
14785371 TAATTATATAAAACAAG
65 TAATAATATAAAACAAG
14785388 TAATAAATATATAAT
1 TAATAAATATATAAT
14785403 TAATCATAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 4 0.05
80 6 0.07
81 70 0.86
82 1 0.01
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.30
Consensus pattern (81 bp):
TAATAAATATATAATCAAGCAATTAACAACGTAAAACAAGCAAATAAATATATAATAATCCAAAT
AATAATATAAAACAAG
Found at i:14786247 original size:6 final size:6
Alignment explanation
Indices: 14786226--14786297 Score: 67
Period size: 6 Copynumber: 12.3 Consensus size: 6
14786216 GAATTAAACA
* * * * *
14786226 AAAACT AAAATT -AAATT AAAATC AAAATC AAAATT -AAAGT CAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
* *
14786272 AAAATA AAAATT AAAATT AAGATT AA
1 AAAATT AAAATT AAAATT AAAATT AA
14786298 CTTTTCAGGC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
5 9 0.16
6 46 0.84
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (6 bp):
AAAATT
Found at i:14786258 original size:23 final size:23
Alignment explanation
Indices: 14786232--14786291 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
14786222 AACAAAAACT
*
14786232 AAAATTAAATTAAAATCAAAATC
1 AAAATTAAATTAAAATCAAAATA
* * *
14786255 AAAATTAAAGTCAAATTAAAATA
1 AAAATTAAATTAAAATCAAAATA
14786278 AAAATTAAAATTAA
1 AAAATT-AAATTAA
14786292 GATTAACTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 25 0.83
24 5 0.17
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATTAAATTAAAATCAAAATA
Found at i:14786263 original size:29 final size:29
Alignment explanation
Indices: 14786226--14786297 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
14786216 GAATTAAACA
* *
14786226 AAAACTAAAATTAAATTAAAATCAAAATC
1 AAAATTAAAATTAAATTAAAATAAAAATC
* * *
14786255 AAAATTAAAGTCAAATTAAAATAAAAATT
1 AAAATTAAAATTAAATTAAAATAAAAATC
*
14786284 AAAATTAAGATTAA
1 AAAATTAAAATTAA
14786298 CTTTTCAGGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (29 bp):
AAAATTAAAATTAAATTAAAATAAAAATC
Found at i:14786611 original size:43 final size:42
Alignment explanation
Indices: 14786554--14786760 Score: 188
Period size: 43 Copynumber: 4.8 Consensus size: 42
14786544 GGCCCTGCAT
* * * *
14786554 AACTGAAGTTTTGAAATTTTTGAAAAAACAAAATGCCTCATAC
1 AACTGAGGCTTTGAAACTTTTG-AAAAATAAAATGCCTCATAC
*
14786597 AATTGAGGCTTTGAAACTTTTGAAAAATAAAATG-CTCATCCAC
1 AACTGAGGCTTTGAAACTTTTGAAAAATAAAATGCCTCAT--AC
* * *
14786640 AACTAAGGCTTTGAAAC-TTTGAAAAAATAAAATGCTCCCCTAC
1 AACTGAGGCTTTGAAACTTTTG-AAAAATAAAATGC-CTCATAC
* * * ** *
14786683 AACTGAGACTTCGAAACTTTTGAAAAATAAAATGCTCCCCCAT
1 AACTGAGGCTTTGAAACTTTTGAAAAATAAAATGC-CTCATAC
14786726 AACTGAGGCTTT-AGAACTTTTTG-AAAATAAAATGC
1 AACTGAGGCTTTGA-AAC-TTTTGAAAAATAAAATGC
14786761 TTCCCCACAA
Statistics
Matches: 140, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
41 5 0.04
42 16 0.11
43 107 0.76
44 9 0.06
45 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (42 bp):
AACTGAGGCTTTGAAACTTTTGAAAAATAAAATGCCTCATAC
Found at i:14786653 original size:86 final size:87
Alignment explanation
Indices: 14786563--14786752 Score: 249
Period size: 86 Copynumber: 2.2 Consensus size: 87
14786553 TAACTGAAGT
* * * *
14786563 TTTGAAATTTTTGAAAAAACAAAATGC-CTCATACAATTGAGGCTTTGAAACTTTTGAAAAATAA
1 TTTGAAATTTTTGAAAAAACAAAATGCTCCCATACAACTGAGACTTCGAAACTTTTGAAAAATAA
*
14786627 AATGCTCATCCACAACTAAGGC
66 AATGCTCACCCACAACTAAGGC
* * *
14786649 TTTGAAA-CTTTGAAAAAATAAAATGCTCCCCTACAACTGAGACTTCGAAACTTTTGAAAAATAA
1 TTTGAAATTTTTGAAAAAACAAAATGCTCCCATACAACTGAGACTTCGAAACTTTTGAAAAATAA
* * *
14786713 AATGCTCCCCCATAACTGAGGC
66 AATGCTCACCCACAACTAAGGC
*
14786735 TTTAGAACTTTTTGAAAA
1 TTT-GAAATTTTTGAAAA
14786753 TAAAATGCTT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
85 17 0.19
86 60 0.68
87 3 0.03
88 8 0.09
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.29
Consensus pattern (87 bp):
TTTGAAATTTTTGAAAAAACAAAATGCTCCCATACAACTGAGACTTCGAAACTTTTGAAAAATAA
AATGCTCACCCACAACTAAGGC
Found at i:14786753 original size:86 final size:85
Alignment explanation
Indices: 14786551--14786774 Score: 245
Period size: 86 Copynumber: 2.6 Consensus size: 85
14786541 AATGGCCCTG
* * * * * * * * *
14786551 CATAACTGAAGTTTTGAAATTTTTGAAAAAACAAAATGC-CTCATACAATTGAGGCTTTGAAACT
1 CATAACTGAGGCTTTGAACTTTTTG--AAAATAAAATGCTCCCCTACAACTGAGACTTCGAAACT
*
14786615 TTTGAAAAATAAAATGCTCATC
64 TTTGAAAAATAAAATGCTCACC
* * ***
14786637 CACAACTAAGGCTTTGAAACTTTGAAAAAATAAAATGCTCCCCTACAACTGAGACTTCGAAACTT
1 CATAACTGAGGCTTTG-AACTTTTTGAAAATAAAATGCTCCCCTACAACTGAGACTTCGAAACTT
*
14786702 TTGAAAAATAAAATGCTCCCC
65 TTGAAAAATAAAATGCTCACC
14786723 CATAACTGAGGCTTTAGAACTTTTTGAAAATAAAATGCTTCCCC-ACAACTGA
1 CATAACTGAGGCTTT-GAACTTTTTGAAAATAAAATGC-TCCCCTACAACTGA
14786775 AGCTTTAGAA
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
85 11 0.10
86 91 0.81
87 11 0.10
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (85 bp):
CATAACTGAGGCTTTGAACTTTTTGAAAATAAAATGCTCCCCTACAACTGAGACTTCGAAACTTT
TGAAAAATAAAATGCTCACC
Found at i:14786761 original size:43 final size:43
Alignment explanation
Indices: 14786595--14786801 Score: 215
Period size: 43 Copynumber: 4.8 Consensus size: 43
14786585 AATGCCTCAT
* **
14786595 ACAATTGAGGCTTTGAAAC-TTTTGAAAAATAAAATGCTCATCC
1 ACAACTGAGGCTTTGAAACTTTTTG-AAAATAAAATGCTCCCCC
* *** *
14786638 ACAACTAAGGCTTTGAAACTTTGAAAAAATAAAATGCTCCCCT
1 ACAACTGAGGCTTTGAAACTTTTTGAAAATAAAATGCTCCCCC
* *
14786681 ACAACTGAGACTTCGAAAC-TTTTGAAAAATAAAATGCTCCCCC
1 ACAACTGAGGCTTTGAAACTTTTTG-AAAATAAAATGCTCCCCC
* *
14786724 ATAACTGAGGCTTT-AGAACTTTTTGAAAATAAAATGCTTCCCC
1 ACAACTGAGGCTTTGA-AACTTTTTGAAAATAAAATGCTCCCCC
* *
14786767 ACAACTGAAGCTTT-AGAACTTTTTAGAAAAAAAAA
1 ACAACTGAGGCTTTGA-AACTTTTT-GAAAATAAAA
14786802 AGATCATTCT
Statistics
Matches: 137, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
42 3 0.02
43 118 0.86
44 16 0.12
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (43 bp):
ACAACTGAGGCTTTGAAACTTTTTGAAAATAAAATGCTCCCCC
Found at i:14786991 original size:13 final size:13
Alignment explanation
Indices: 14786973--14786997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14786963 TTCCAAACAT
14786973 ATGCAATGAATGC
1 ATGCAATGAATGC
14786986 ATGCAATGAATG
1 ATGCAATGAATG
14786998 AAAAATTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
ATGCAATGAATGC
Found at i:14797321 original size:21 final size:21
Alignment explanation
Indices: 14797295--14797335 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14797285 GTTAGTTAAC
14797295 ATATATAAGGAATAACATAAT
1 ATATATAAGGAATAACATAAT
* *
14797316 ATATATATGGAATAATATAA
1 ATATATAAGGAATAACATAA
14797336 AAAGTTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (21 bp):
ATATATAAGGAATAACATAAT
Found at i:14798308 original size:25 final size:26
Alignment explanation
Indices: 14798261--14798313 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
14798251 CAATCATACA
*
14798261 ACCATGTAATAAATATTAAAAATCAT
1 ACCATGTAATAAATACTAAAAATCAT
*
14798287 ACCATGTAA-AAATACTATAAATCAT
1 ACCATGTAATAAATACTAAAAATCAT
14798312 AC
1 AC
14798314 TAAATATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (26 bp):
ACCATGTAATAAATACTAAAAATCAT
Found at i:14798396 original size:20 final size:20
Alignment explanation
Indices: 14798371--14798496 Score: 88
Period size: 18 Copynumber: 6.7 Consensus size: 20
14798361 TGCAAGAATG
*
14798371 TCATGCAAATGTATTAATTA
1 TCATGCAAATATATTAATTA
**
14798391 TCATGC-AATA-A-TAACAA
1 TCATGCAAATATATTAATTA
* *
14798408 TCATGTAAAAATA-TAA-TA
1 TCATGCAAATATATTAATTA
*
14798426 TCATACAAATATATTAATTA
1 TCATGCAAATATATTAATTA
* *
14798446 TCATGC-AATAATATAAAATA
1 TCATGCAAAT-ATATTAATTA
* * *
14798466 CCTTGTAAATATA-TAA-TA
1 TCATGCAAATATATTAATTA
14798484 TCATGCAAATATA
1 TCATGCAAATATA
14798497 ATCACACAAA
Statistics
Matches: 81, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
17 9 0.11
18 27 0.33
19 15 0.19
20 27 0.33
21 3 0.04
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (20 bp):
TCATGCAAATATATTAATTA
Found at i:14798441 original size:55 final size:57
Alignment explanation
Indices: 14798371--14798496 Score: 184
Period size: 55 Copynumber: 2.2 Consensus size: 57
14798361 TGCAAGAATG
* *
14798371 TCATGCAAATGTATTAATTATCATGCAATAATA-ACAAT-CATGTAAAAATATAATA
1 TCATGCAAATATATTAATTATCATGCAATAATATAAAATACATGTAAAAATATAATA
* * *
14798426 TCATACAAATATATTAATTATCATGCAATAATATAAAATACCTTGTAAATATATAATA
1 TCATGCAAATATATTAATTATCATGCAATAATATAAAATA-CATGTAAAAATATAATA
14798484 TCATGCAAATATA
1 TCATGCAAATATA
14798497 ATCACACAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
55 31 0.50
56 4 0.06
58 27 0.44
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (57 bp):
TCATGCAAATATATTAATTATCATGCAATAATATAAAATACATGTAAAAATATAATA
Found at i:14798870 original size:17 final size:17
Alignment explanation
Indices: 14798830--14798874 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
14798820 ATATTAATAT
*
14798830 TCATGCAAA-CATGCAA
1 TCATGCAAATAATGCAA
* *
14798846 TTATGCAAATAATGTAA
1 TCATGCAAATAATGCAA
14798863 TCATGCAAATAA
1 TCATGCAAATAA
14798875 ATATATAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (17 bp):
TCATGCAAATAATGCAA
Found at i:14798921 original size:32 final size:32
Alignment explanation
Indices: 14798882--14798990 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 32
14798872 TAAATATATA
14798882 ATTAAATATATTAATAATCATGTAAACATGCT
1 ATTAAATATATTAATAATCATGTAAACATGCT
** ** *
14798914 ATTAAATATATT-ATCAGGCAAATAAACAT-AT
1 ATTAAATATATTAAT-AATCATGTAAACATGCT
* * *
14798945 AATTAAATATATTAGTAATCATGCAAACATGCA
1 -ATTAAATATATTAATAATCATGTAAACATGCT
14798978 ATTAAATATATTA
1 ATTAAATATATTA
14798991 TCATGCAAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
31 3 0.05
32 56 0.93
33 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (32 bp):
ATTAAATATATTAATAATCATGTAAACATGCT
Found at i:14798958 original size:64 final size:63
Alignment explanation
Indices: 14798862--14799010 Score: 235
Period size: 64 Copynumber: 2.3 Consensus size: 63
14798852 AAATAATGTA
* *
14798862 ATCATGCAAATAAATATATAATTAAATATATTAATAATCATGTAAACATGCTATTAAATATATT
1 ATCATGCAAATAAA-ATATAATTAAATATATTAATAATCATGCAAACATGCAATTAAATATATT
* *
14798926 ATCAGGCAAATAAACATATAATTAAATATATTAGTAATCATGCAAACATGCAATTAAATATATT
1 ATCATGCAAATAAA-ATATAATTAAATATATTAATAATCATGCAAACATGCAATTAAATATATT
14798990 ATCATGCAAATAATAATATAA
1 ATCATGCAAATAA-AATATAA
14799011 ATCATGCAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
64 77 0.99
65 1 0.01
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (63 bp):
ATCATGCAAATAAAATATAATTAAATATATTAATAATCATGCAAACATGCAATTAAATATATT
Found at i:14798997 original size:20 final size:22
Alignment explanation
Indices: 14798972--14799245 Score: 129
Period size: 21 Copynumber: 13.1 Consensus size: 22
14798962 ATCATGCAAA
*
14798972 CATGCAATTAAAT-ATAT-TAT
1 CATGCAATTAAATAATATAAAT
*
14798992 CATGCAAAT-AATAATATAAAT
1 CATGCAATTAAATAATATAAAT
* ** *
14799013 CATGCAATT-AACAACGTAAAA
1 CATGCAATTAAATAATATAAAT
*
14799034 CAAGCAATTAAAT-ATAT-AAT
1 CATGCAATTAAATAATATAAAT
* *
14799054 CATACAAAT-AATAATCTATAAAT
1 CATGCAATTAAATAA--TATAAAT
* * *
14799077 CATGCAATT-AACAATGTAAAA
1 CATGCAATTAAATAATATAAAT
***
14799098 CAAAAAATTAAAT-ATAT-AAT
1 CATGCAATTAAATAATATAAAT
* *
14799118 TATGCAAAT-AATAATATAAAT
1 CATGCAATTAAATAATATAAAT
*
14799139 CATGCAA-TAAAT-ATAT-GAT
1 CATGCAATTAAATAATATAAAT
*
14799158 CATGCAATT-AATAATGTAAAAT
1 CATGCAATTAAATAATAT-AAAT
*
14799180 -ATGCAAATAAAT-ATAT-AAT
1 CATGCAATTAAATAATATAAAT
* * * *
14799199 AATACAAAT-AATAATATAAAA
1 CATGCAATTAAATAATATAAAT
* *
14799220 CTTGTAA-TAAATATATAATAAAT
1 CATGCAATTAAATA-AT-ATAAAT
14799243 CAT
1 CAT
14799246 AATATATAAA
Statistics
Matches: 187, Mismatches: 45, Indels: 41
0.68 0.16 0.15
Matches are distributed among these distances:
19 27 0.14
20 52 0.28
21 73 0.39
22 14 0.07
23 21 0.11
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.30
Consensus pattern (22 bp):
CATGCAATTAAATAATATAAAT
Found at i:14799017 original size:41 final size:41
Alignment explanation
Indices: 14798972--14799262 Score: 199
Period size: 41 Copynumber: 7.1 Consensus size: 41
14798962 ATCATGCAAA
*
14798972 CATGCAATTAAATATATTATCATGCAAATAATAATATAAAT
1 CATGCAATTAAATATATAATCATGCAAATAATAATATAAAT
* * *
14799013 CATGCAATTAACA-ACGTA-AAACAAGC-AATTA-AATATATAAT
1 CATGCAATTAA-ATA--TATAATCATGCAAATAATAATATA-AAT
* * * * * * *
14799054 CATACAAATAATAATCTATAAATCATGCAATTAACAATGTAAAA
1 CATGC-AATTA-AATATAT-AATCATGCAAATAATAATATAAAT
*** *
14799098 CAAAAAATTAAATATATAATTATGCAAATAATAATATAAAT
1 CATGCAATTAAATATATAATCATGCAAATAATAATATAAAT
* * *
14799139 CATGCAA-TAAATATATGATCATGCAATTAATAATGTAAAAT
1 CATGCAATTAAATATATAATCATGCAAATAATAATAT-AAAT
* * * *
14799180 -ATGCAAATAAATATATAATAATACAAATAATAATATAAAA
1 CATGCAATTAAATATATAATCATGCAAATAATAATATAAAT
* * *
14799220 CTTGTAA-TAAATATATAATAAAT-C--ATAAT-ATATAAAT
1 CATGCAATTAAATATATAAT-CATGCAAATAATAATATAAAT
14799257 CATGCA
1 CATGCA
14799263 TAAAATAATT
Statistics
Matches: 195, Mismatches: 40, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
37 11 0.06
38 5 0.03
40 53 0.27
41 83 0.43
42 17 0.09
43 13 0.07
44 8 0.04
45 5 0.03
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (41 bp):
CATGCAATTAAATATATAATCATGCAAATAATAATATAAAT
Found at i:14799062 original size:62 final size:62
Alignment explanation
Indices: 14798969--14799146 Score: 275
Period size: 64 Copynumber: 2.8 Consensus size: 62
14798959 GTAATCATGC
* *
14798969 AAACATGCAATTAAATATATTATCATGCAAATAATAATATAAATCATGCAATTAACAACGTA
1 AAACAAGCAATTAAATATATAATCATGCAAATAATAATATAAATCATGCAATTAACAACGTA
* *
14799031 AAACAAGCAATTAAATATATAATCATACAAATAATAATCTATAAATCATGCAATTAACAATGTA
1 AAACAAGCAATTAAATATATAATCATGCAAATAATAA--TATAAATCATGCAATTAACAACGTA
** *
14799095 AAACAAAAAATTAAATATATAATTATGCAAATAATAATATAAATCATGCAAT
1 AAACAAGCAATTAAATATATAATCATGCAAATAATAATATAAATCATGCAAT
14799147 AAATATATGA
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
62 49 0.46
64 57 0.54
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (62 bp):
AAACAAGCAATTAAATATATAATCATGCAAATAATAATATAAATCATGCAATTAACAACGTA
Found at i:14799161 original size:19 final size:19
Alignment explanation
Indices: 14799106--14799266 Score: 75
Period size: 19 Copynumber: 8.2 Consensus size: 19
14799096 AACAAAAAAT
*
14799106 TAAATATATAATTATGCAA
1 TAAATATATAATCATGCAA
14799125 -ATAATAATATAAATCATGCAA
1 TA-AAT-ATAT-AATCATGCAA
*
14799146 TAAATATATGATCATGCAA
1 TAAATATATAATCATGCAA
* *
14799165 TTAATAATGTAAAAT-ATGCAAA
1 -T-A-AATATATAATCATGC-AA
* *
14799187 TAAATATATAATAATACAA
1 TAAATATATAATCATGCAA
* * *
14799206 -ATAATAATATAAAACTTGTAA
1 TA-AAT-ATAT-AATCATGCAA
*
14799227 TAAATATATAATAAAT-C-A
1 TAAATATATAAT-CATGCAA
14799245 T-AATATATAAATCATGC-A
1 TAAATATAT-AATCATGCAA
14799263 TAAA
1 TAAA
14799267 ATAATTATTC
Statistics
Matches: 107, Mismatches: 18, Indels: 34
0.67 0.11 0.21
Matches are distributed among these distances:
17 9 0.08
18 10 0.09
19 29 0.27
20 22 0.21
21 26 0.24
22 11 0.10
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAATATATAATCATGCAA
Found at i:14799168 original size:81 final size:81
Alignment explanation
Indices: 14799075--14799235 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
14799065 TAATCTATAA
* * *
14799075 ATCATGCAATTAACAATGTAAAACA-AAAAATTAAATATATAATTATGCAAATAATAATATAAAT
1 ATCATGCAATTAACAATGTAAAACATAAAAA-TAAATATATAATAATACAAATAATAATATAAAA
14799139 CATGCAATAAATATATG
65 CATGCAATAAATATATG
* * **
14799156 ATCATGCAATTAATAATGTAAAATATGCAAATAAATATATAATAATACAAATAATAATATAAAAC
1 ATCATGCAATTAACAATGTAAAACATAAAAATAAATATATAATAATACAAATAATAATATAAAAC
* *
14799221 TTGTAATAAATATAT
66 ATGCAATAAATATAT
14799236 AATAAATCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
81 67 0.96
82 3 0.04
ACGTcount: A:0.56, C:0.07, G:0.06, T:0.31
Consensus pattern (81 bp):
ATCATGCAATTAACAATGTAAAACATAAAAATAAATATATAATAATACAAATAATAATATAAAAC
ATGCAATAAATATATG
Found at i:14800538 original size:11 final size:11
Alignment explanation
Indices: 14800524--14800574 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
14800514 AAACAAAAAC
14800524 TAAAATCAAAT
1 TAAAATCAAAT
14800535 TAAAATCAAAT
1 TAAAATCAAAT
*
14800546 TAAAGTCAAAT
1 TAAAATCAAAT
*
14800557 TAAAATTAAAAT
1 TAAAA-TCAAAT
14800569 TAAAAT
1 TAAAAT
14800575 TAGCTTTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
11 26 0.72
12 10 0.28
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (11 bp):
TAAAATCAAAT
Found at i:14800538 original size:22 final size:22
Alignment explanation
Indices: 14800510--14800574 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
14800500 TTTAACCAAG
14800510 AATTAAACA-AAAACTAAAATCA
1 AATTAAA-ATAAAACTAAAATCA
* * *
14800532 AATTAAAATCAAATTAAAGTCA
1 AATTAAAATAAAACTAAAATCA
*
14800554 AATTAAAATTAAAATTAAAAT
1 AATTAAAA-TAAAACTAAAAT
14800575 TAGCTTTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.03
22 25 0.69
23 10 0.28
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.26
Consensus pattern (22 bp):
AATTAAAATAAAACTAAAATCA
Found at i:14800540 original size:6 final size:6
Alignment explanation
Indices: 14800531--14800576 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
14800521 AACTAAAATC
* * *
14800531 AAATTA AAA-TC AAATT- AAAGTC AAATTA AAATTA AAATTA AAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
14800577 GCTTTTTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 8 0.24
6 26 0.76
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (6 bp):
AAATTA
Found at i:14800846 original size:2 final size:2
Alignment explanation
Indices: 14800835--14800864 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14800825 GATGTCCATT
14800835 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14800865 TTTTGATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14802698 original size:17 final size:17
Alignment explanation
Indices: 14802671--14802709 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
14802661 TTTAATATAA
14802671 AATAT-AATATTTTAAT
1 AATATAAATATTTTAAT
*
14802687 AGTATAAATATTTTAAT
1 AATATAAATATTTTAAT
14802704 AATATA
1 AATATA
14802710 TATTACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
AATATAAATATTTTAAT
Found at i:14802837 original size:19 final size:19
Alignment explanation
Indices: 14802813--14802873 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
14802803 TTATTTTAAG
14802813 TATTTTTATATTAATATAA
1 TATTTTTATATTAATATAA
* *
14802832 TATTTTAATATTAA-ATAT
1 TATTTTTATATTAATATAA
*
14802850 TATTATTA-A--AATATAAA
1 TATTTTTATATTAATAT-AA
14802867 TATTTTT
1 TATTTTT
14802874 CAAAATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 2 0.06
16 2 0.06
17 8 0.24
18 9 0.26
19 13 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTTTTATATTAATATAA
Found at i:14802880 original size:18 final size:20
Alignment explanation
Indices: 14802838--14802882 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
14802828 ATAATATTTT
*
14802838 AATATTAAATATTATTATTAA
1 AATA-TAAATATTATTATCAA
14802859 AATATAAATATT-TT-TCAA
1 AATATAAATATTATTATCAA
14802877 AATATA
1 AATATA
14802883 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 2 0.09
20 8 0.35
21 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
AATATAAATATTATTATCAA
Found at i:14803436 original size:12 final size:12
Alignment explanation
Indices: 14803421--14803476 Score: 58
Period size: 12 Copynumber: 4.3 Consensus size: 12
14803411 ATTTTTAATA
*
14803421 TAAATTTAAAAT
1 TAAATATAAAAT
14803433 TAAATATATATATAT
1 TAAATATA-A-A-AT
*
14803448 AAATATATAAAAT
1 TAA-ATATAAAAT
14803461 TAAATATAAAAT
1 TAAATATAAAAT
14803473 TAAA
1 TAAA
14803477 AAAATAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 20 0.54
13 5 0.14
14 2 0.05
15 5 0.14
16 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAATATAAAAT
Found at i:14803464 original size:14 final size:14
Alignment explanation
Indices: 14803427--14803476 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
14803417 AATATAAATT
14803427 TAAAATTAAATATA
1 TAAAATTAAATATA
*
14803441 T-ATATATAAATATA
1 TAAAAT-TAAATATA
14803455 TAAAATT-AA-ATA
1 TAAAATTAAATATA
14803467 TAAAATTAAA
1 TAAAATTAAA
14803477 AAAATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 10 0.32
13 7 0.23
14 11 0.35
15 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAATTAAATATA
Found at i:14803886 original size:11 final size:11
Alignment explanation
Indices: 14803861--14803897 Score: 60
Period size: 10 Copynumber: 3.5 Consensus size: 11
14803851 TTTTATATTT
14803861 TTTAAAATA-A
1 TTTAAAATAGA
14803871 TTTAAAATAGA
1 TTTAAAATAGA
14803882 TTT-AAATAGA
1 TTTAAAATAGA
14803892 TTTAAA
1 TTTAAA
14803898 TATAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 19 0.76
11 6 0.24
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (11 bp):
TTTAAAATAGA
Found at i:14807057 original size:20 final size:20
Alignment explanation
Indices: 14807032--14807070 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
14807022 CGAGCTATTG
*
14807032 TTTTTCTTGCTTGGTTTGAC
1 TTTTTCTTACTTGGTTTGAC
14807052 TTTTTCTTACTTGGTTTGA
1 TTTTTCTTACTTGGTTTGA
14807071 TAACAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.08, C:0.13, G:0.18, T:0.62
Consensus pattern (20 bp):
TTTTTCTTACTTGGTTTGAC
Found at i:14807090 original size:19 final size:20
Alignment explanation
Indices: 14807058--14807097 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
14807048 TGACTTTTTC
*
14807058 TTACTTGGTTTGATAACAAT
1 TTACTTGGTCTGATAACAAT
14807078 TTAC-TGGTCTGATAACAAT
1 TTACTTGGTCTGATAACAAT
14807097 T
1 T
14807098 CTAATGCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (20 bp):
TTACTTGGTCTGATAACAAT
Found at i:14809235 original size:13 final size:13
Alignment explanation
Indices: 14809215--14809260 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
14809205 ACTTCTTAAG
14809215 ATAATAATAAAAGT
1 ATAATAATAAAA-T
14809229 A-AATAATAAATAT
1 ATAATAATAAA-AT
14809242 ATAATAATAAAA-
1 ATAATAATAAAAT
14809254 ATAATAA
1 ATAATAA
14809261 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 7 0.23
13 12 0.40
14 11 0.37
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (13 bp):
ATAATAATAAAAT
Found at i:14811810 original size:3 final size:3
Alignment explanation
Indices: 14811802--14811840 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14811792 ACATGTAAAT
14811802 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14811841 CATGTGTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14818813 original size:34 final size:34
Alignment explanation
Indices: 14818775--14818843 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
14818765 AGAGAAATGA
*
14818775 TTTTAAAGAAGATTTTACCAAATCAACAAGATAG
1 TTTTAAAGAAGATCTTACCAAATCAACAAGATAG
* *
14818809 TTTTAAGGAAGATCTTACCAAATCAATAAGATAG
1 TTTTAAAGAAGATCTTACCAAATCAACAAGATAG
14818843 T
1 T
14818844 AGGTGAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (34 bp):
TTTTAAAGAAGATCTTACCAAATCAACAAGATAG
Found at i:14819178 original size:21 final size:21
Alignment explanation
Indices: 14819154--14819196 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
14819144 GGTAAAATCC
14819154 TGTAAAGGCAAAACAAAATAG
1 TGTAAAGGCAAAACAAAATAG
*
14819175 TGTAAAGGTAAAACAAAATAG
1 TGTAAAGGCAAAACAAAATAG
14819196 T
1 T
14819197 ACAAAGCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.19
Consensus pattern (21 bp):
TGTAAAGGCAAAACAAAATAG
Found at i:14819202 original size:21 final size:21
Alignment explanation
Indices: 14819157--14819202 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
14819147 AAAATCCTGT
**
14819157 AAAGGCAAAACAAAATAGTGT
1 AAAGGCAAAACAAAATAGTAC
*
14819178 AAAGGTAAAACAAAATAGTAC
1 AAAGGCAAAACAAAATAGTAC
14819199 AAAG
1 AAAG
14819203 CTGGATAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.61, C:0.09, G:0.17, T:0.13
Consensus pattern (21 bp):
AAAGGCAAAACAAAATAGTAC
Found at i:14820944 original size:33 final size:33
Alignment explanation
Indices: 14820907--14820971 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
14820897 AGGCAGTATT
*
14820907 AATATATTCATTTAGGCATGAGCCTAAGGATTC
1 AATATATTCATTTAGGCATAAGCCTAAGGATTC
14820940 AATATATTCATTTAGGCATAAGCCTAAGGATT
1 AATATATTCATTTAGGCATAAGCCTAAGGATT
14820972 ACTCCCATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (33 bp):
AATATATTCATTTAGGCATAAGCCTAAGGATTC
Found at i:14831012 original size:7 final size:7
Alignment explanation
Indices: 14830978--14831015 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
14830968 AGCTTGGTAA
14830978 AAATAA-
1 AAATAAT
*
14830984 AATATAAA
1 AA-ATAAT
14830992 AAATAAT
1 AAATAAT
14830999 AAATAAT
1 AAATAAT
14831006 AAATAAT
1 AAATAAT
14831013 AAA
1 AAA
14831016 GCTTGAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
6 2 0.07
7 25 0.86
8 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:14832184 original size:47 final size:47
Alignment explanation
Indices: 14832130--14832224 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
14832120 TTCAATCTTT
* **
14832130 TCATGGCTTCCGTTTTTACGTTCTTTATTACTGTTAATCGTTCATGG
1 TCATGGCTTCCATTTTTACGTTCTTTACAACTGTTAATCGTTCATGG
* *
14832177 TCATGGCTTCCATTTTTATGTTCTTTACAATTGTTAATCGTTCATGG
1 TCATGGCTTCCATTTTTACGTTCTTTACAACTGTTAATCGTTCATGG
14832224 T
1 T
14832225 TGAAGGGGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (47 bp):
TCATGGCTTCCATTTTTACGTTCTTTACAACTGTTAATCGTTCATGG
Found at i:14832902 original size:13 final size:13
Alignment explanation
Indices: 14832884--14832926 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
14832874 TGAAACCCTA
14832884 AAATAAAAATCCT
1 AAATAAAAATCCT
*
14832897 AAATAAAACT-CT
1 AAATAAAAATCCT
*
14832909 AAGATTAAAATCCT
1 AA-ATAAAAATCCT
14832923 AAAT
1 AAAT
14832927 GAAACCCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (13 bp):
AAATAAAAATCCT
Found at i:14832910 original size:12 final size:13
Alignment explanation
Indices: 14832862--14832937 Score: 54
Period size: 12 Copynumber: 6.0 Consensus size: 13
14832852 TAAATGAAAT
*
14832862 TAAAAC-CCTAAG
1 TAAAACTCCTAAA
*
14832874 TGAAAC-CCTAAAA
1 TAAAACTCCT-AAA
*
14832887 TAAAAATCCTAAA
1 TAAAACTCCTAAA
14832900 TAAAACT-CTAAGA
1 TAAAACTCCTAA-A
14832913 TTAAAA-TCCTAAA
1 -TAAAACTCCTAAA
*
14832926 TGAAAC-CCTAAA
1 TAAAACTCCTAAA
14832938 CCCTAAGTGA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
12 22 0.42
13 18 0.35
14 12 0.23
ACGTcount: A:0.54, C:0.20, G:0.05, T:0.21
Consensus pattern (13 bp):
TAAAACTCCTAAA
Found at i:14832910 original size:26 final size:26
Alignment explanation
Indices: 14832858--14832937 Score: 106
Period size: 26 Copynumber: 3.1 Consensus size: 26
14832848 AACCTAAATG
* *
14832858 AAATTAAAACCCTAAGTGAAACCCTA
1 AAATTAAAATCCTAAATGAAACCCTA
* * *
14832884 AAATAAAAATCCTAAATAAAACTCTA
1 AAATTAAAATCCTAAATGAAACCCTA
*
14832910 AGATTAAAATCCTAAATGAAACCCTA
1 AAATTAAAATCCTAAATGAAACCCTA
14832936 AA
1 AA
14832938 CCCTAAGTGA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.55, C:0.19, G:0.05, T:0.21
Consensus pattern (26 bp):
AAATTAAAATCCTAAATGAAACCCTA
Found at i:14832948 original size:19 final size:19
Alignment explanation
Indices: 14832920--14832956 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14832910 AGATTAAAAT
14832920 CCTAAATGAAACCCTAAAC
1 CCTAAATGAAACCCTAAAC
* *
14832939 CCTAAGTGAAACCTTAAA
1 CCTAAATGAAACCCTAAA
14832957 ATCCTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.27, G:0.08, T:0.19
Consensus pattern (19 bp):
CCTAAATGAAACCCTAAAC
Found at i:14835503 original size:17 final size:17
Alignment explanation
Indices: 14835481--14835522 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
14835471 ACGAACAACT
*
14835481 CTGTATCCTCCATAAAG
1 CTGTATCCTCCACAAAG
14835498 CTGTATCCTCCACAAAG
1 CTGTATCCTCCACAAAG
*
14835515 CTATATCC
1 CTGTATCC
14835523 ATTTTACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (17 bp):
CTGTATCCTCCACAAAG
Found at i:14842762 original size:14 final size:15
Alignment explanation
Indices: 14842743--14842779 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
14842733 GGGGGCATGC
14842743 AAAAAAAAAAT-AAA
1 AAAAAAAAAATGAAA
*
14842757 AAAAAAAGAATGAAA
1 AAAAAAAAAATGAAA
14842772 AAAAAAAA
1 AAAAAAAA
14842780 GAGAGAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.89, C:0.00, G:0.05, T:0.05
Consensus pattern (15 bp):
AAAAAAAAAATGAAA
Found at i:14842781 original size:16 final size:14
Alignment explanation
Indices: 14842743--14842778 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
14842733 GGGGGCATGC
14842743 AAAAAAAA-AATAA
1 AAAAAAAAGAATAA
14842756 AAAAAAAAGAATGAA
1 AAAAAAAAGAAT-AA
14842771 AAAAAAAA
1 AAAAAAAA
14842779 AGAGAGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.38
14 3 0.14
15 10 0.48
ACGTcount: A:0.89, C:0.00, G:0.06, T:0.06
Consensus pattern (14 bp):
AAAAAAAAGAATAA
Found at i:14843289 original size:12 final size:12
Alignment explanation
Indices: 14843274--14843309 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
14843264 AGAAAGGAAG
14843274 TAAAAAAGAAAA
1 TAAAAAAGAAAA
*
14843286 TAAAAAAGAAAG
1 TAAAAAAGAAAA
*
14843298 TACAAAAGAAAA
1 TAAAAAAGAAAA
14843310 AAAGAGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.78, C:0.03, G:0.11, T:0.08
Consensus pattern (12 bp):
TAAAAAAGAAAA
Found at i:14843293 original size:24 final size:25
Alignment explanation
Indices: 14843257--14843358 Score: 82
Period size: 24 Copynumber: 4.0 Consensus size: 25
14843247 AATAATTTAA
*
14843257 AAAAAAAAGAAAGGAAGTAAAAAAG
1 AAAAAAAAGAAAGAAAGTAAAAAAG
* *
14843282 AAAATAAA-AAAGAAAGTACAAAAG
1 AAAAAAAAGAAAGAAAGTAAAAAAG
** *
14843306 AAAAAAAGAGAAATGAATAGCCAAAATG
1 AAAAAAA-AGAAA-GAA-AGTAAAAAAG
*
14843334 AAAGAAAAAGAAGGAAAAG-AAAAAA
1 AAA-AAAAAGAAAG-AAAGTAAAAAA
14843359 TGATTGATTG
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
24 20 0.33
25 8 0.13
26 7 0.12
27 6 0.10
28 15 0.25
29 4 0.07
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.06
Consensus pattern (25 bp):
AAAAAAAAGAAAGAAAGTAAAAAAG
Found at i:14847299 original size:17 final size:17
Alignment explanation
Indices: 14847277--14847318 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
14847267 AAGAACAACT
*
14847277 CTGTATCCTCCATAAAG
1 CTGTATCCTCCACAAAG
14847294 CTGTATCCTCCACAAAG
1 CTGTATCCTCCACAAAG
*
14847311 CTATATCC
1 CTGTATCC
14847319 ATTTTACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (17 bp):
CTGTATCCTCCACAAAG
Found at i:14854558 original size:14 final size:14
Alignment explanation
Indices: 14854518--14854552 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14854508 GCATGCAAAT
*
14854518 AAAAAA-AATAAAA
1 AAAAAAGAATGAAA
14854531 AAAAAAGAATGAAA
1 AAAAAAGAATGAAA
14854545 AAAAAAGA
1 AAAAAAGA
14854553 GAGAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.06
Consensus pattern (14 bp):
AAAAAAGAATGAAA
Found at i:14855051 original size:12 final size:12
Alignment explanation
Indices: 14855036--14855071 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
14855026 AGAAAGGAAG
14855036 TAAAAAAGAAAA
1 TAAAAAAGAAAA
*
14855048 TAAAAAAGAAAG
1 TAAAAAAGAAAA
*
14855060 TACAAAAGAAAA
1 TAAAAAAGAAAA
14855072 AAGAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.78, C:0.03, G:0.11, T:0.08
Consensus pattern (12 bp):
TAAAAAAGAAAA
Found at i:14855055 original size:24 final size:25
Alignment explanation
Indices: 14855019--14855119 Score: 80
Period size: 24 Copynumber: 4.0 Consensus size: 25
14855009 AATAATTTAA
*
14855019 AAAAAAAAGAAAGGAAGTAAAAAAG
1 AAAAAAAAGAAAGAAAGTAAAAAAG
* *
14855044 AAAATAAA-AAAGAAAGTACAAAAG
1 AAAAAAAAGAAAGAAAGTAAAAAAG
* ** *
14855068 AAAAAAGAGAAATGAATAGCCAAAATG
1 AAAAAAAAGAAA-GAA-AGTAAAAAAG
*
14855095 AAAGAAAAAGAAGGAAAAG-AAAAAA
1 AAA-AAAAAGAAAG-AAAGTAAAAAA
14855120 TGATTGATTG
Statistics
Matches: 58, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
24 20 0.34
25 10 0.17
26 7 0.12
27 12 0.21
28 9 0.16
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.06
Consensus pattern (25 bp):
AAAAAAAAGAAAGAAAGTAAAAAAG
Found at i:14855486 original size:21 final size:21
Alignment explanation
Indices: 14855460--14855523 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
14855450 TATAATAATA
14855460 AAAAAAAAAGAAGAAAAAAGG
1 AAAAAAAAAGAAGAAAAAAGG
* * *
14855481 TAAAAAAGAA-ATGAAAAAAGA
1 -AAAAAAAAAGAAGAAAAAAGG
14855502 AAAAAAAAAGAAGAAAAAAGG
1 AAAAAAAAAGAAGAAAAAAGG
14855523 A
1 A
14855524 TGATGGATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 8 0.23
21 19 0.54
22 8 0.23
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (21 bp):
AAAAAAAAAGAAGAAAAAAGG
Found at i:14862667 original size:20 final size:20
Alignment explanation
Indices: 14862642--14862680 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14862632 CAAGATGAAA
14862642 AAGCTGAC-TTGAGGAGCTTC
1 AAGCTGACTTTG-GGAGCTTC
14862662 AAGCTGACTTTGGGAGCTT
1 AAGCTGACTTTGGGAGCTT
14862681 AAATGAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (20 bp):
AAGCTGACTTTGGGAGCTTC
Found at i:14865675 original size:1 final size:1
Alignment explanation
Indices: 14865669--14865696 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
14865659 AAGATGATTG
14865669 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
14865697 GAGAATGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:14866350 original size:2 final size:2
Alignment explanation
Indices: 14866343--14866369 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14866333 ATCTTTCTTC
14866343 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14866370 TAAATAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14866664 original size:15 final size:15
Alignment explanation
Indices: 14866644--14866694 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
14866634 AATGAGATTA
14866644 TTATTTTTTTATGTT
1 TTATTTTTTTATGTT
* *
14866659 TTA-TTTGTGA-GATT
1 TTATTTTTTTATG-TT
14866673 ATTATTTTTTTATGTT
1 -TTATTTTTTTATGTT
14866689 TTATTT
1 TTATTT
14866695 GTCTTTCTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 1 0.04
14 7 0.25
15 12 0.43
16 7 0.25
17 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.73
Consensus pattern (15 bp):
TTATTTTTTTATGTT
Found at i:14866670 original size:30 final size:30
Alignment explanation
Indices: 14866636--14866696 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
14866626 ATTTAAGAAA
14866636 TGAGATTATTATTTTTTTATGTTTTATTTG
1 TGAGATTATTATTTTTTTATGTTTTATTTG
14866666 TGAGATTATTATTTTTTTATGTTTTATTTG
1 TGAGATTATTATTTTTTTATGTTTTATTTG
14866696 T
1 T
14866697 CTTTCTCACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (30 bp):
TGAGATTATTATTTTTTTATGTTTTATTTG
Found at i:14868290 original size:21 final size:19
Alignment explanation
Indices: 14868265--14868309 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 19
14868255 GTATACCTAC
14868265 AAATTTATGTAATTTTAAGAT
1 AAATTTAT-TAA-TTTAAGAT
*
14868286 AAATTTTATTTATTTAAGAT
1 AAA-TTTATTAATTTAAGAT
14868306 AAAT
1 AAAT
14868310 AATGATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 1 0.05
20 11 0.50
21 5 0.23
22 5 0.23
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (19 bp):
AAATTTATTAATTTAAGAT
Found at i:14872103 original size:2 final size:2
Alignment explanation
Indices: 14872096--14872123 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14872086 TCAAACAATA
14872096 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14872124 TTATTTAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14878207 original size:188 final size:187
Alignment explanation
Indices: 14877868--14878209 Score: 533
Period size: 188 Copynumber: 1.8 Consensus size: 187
14877858 CAATGAGAAT
*
14877868 TTTAGTAAATTTTGAGCATTCATGATTCATGCAACTAGATCTGATTGTCTTATATAATTATTATT
1 TTTAGTAAATTTTGAGCATTCATGATTCATGCAACTAGATCTAATTGTCTTATATAATTATTATT
* *** * *
14877933 TTCATTCATCATTATTCCAAGAGATTAATTAAGAAAAGCTATGATATAGTATGGAATAGAGATTA
66 TTCATTCATCATTATTCCAAGAGATTAATTAAGAAAAGCTATGACATAGTACAAAATAGAAATGA
* **
14877998 GGTGTGGCTTTTTTATAGAATTAAGGCAAGCCATTTCTTTTTTTGGTCATAATGAAG
131 GGTATGGCTTTCCTATAGAATTAAGGCAAGCCATTTCTTTTTTTGGTCATAATGAAG
*
14878055 TTTAGTAAATTTTGAGCATTCATGATATCATGCAACTGGATCTAATTGTCTTATATAATTATTAT
1 TTTAGTAAATTTTGAGCATTCATGAT-TCATGCAACTAGATCTAATTGTCTTATATAATTATTAT
* *
14878120 TTTCTTTCATCATTATTTCAAGAGATTAATTAAGAAAAGCTATGACATTA-TACAAAATAGAAAT
65 TTTCATTCATCATTATTCCAAGAGATTAATTAAGAAAAGCTATGACA-TAGTACAAAATAGAAAT
*
14878184 GAGGTATGGCTTTCCTCTAGAATTAA
129 GAGGTATGGCTTTCCTATAGAATTAA
14878210 AGTAAGTAGT
Statistics
Matches: 139, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
187 26 0.19
188 111 0.80
189 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (187 bp):
TTTAGTAAATTTTGAGCATTCATGATTCATGCAACTAGATCTAATTGTCTTATATAATTATTATT
TTCATTCATCATTATTCCAAGAGATTAATTAAGAAAAGCTATGACATAGTACAAAATAGAAATGA
GGTATGGCTTTCCTATAGAATTAAGGCAAGCCATTTCTTTTTTTGGTCATAATGAAG
Found at i:14879404 original size:26 final size:26
Alignment explanation
Indices: 14879374--14879424 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14879364 CAAATAAAAT
*
14879374 TTTTTAATAAATTATTTAAATTGAATA
1 TTTTGAAT-AATTATTTAAATTGAATA
*
14879401 TTTTGGATAATTATTTAAATTGAA
1 TTTTGAATAATTATTTAAATTGAA
14879425 ATCAAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
TTTTGAATAATTATTTAAATTGAATA
Found at i:14880523 original size:19 final size:20
Alignment explanation
Indices: 14880492--14880531 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
14880482 ACAAATGAAT
14880492 TGAAGAAAATATTTTT-TAA
1 TGAAGAAAATATTTTTATAA
14880511 TGAA-AAAATTATTTTTATAA
1 TGAAGAAAA-TATTTTTATAA
14880531 T
1 T
14880532 TTTTGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 11 0.58
20 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
TGAAGAAAATATTTTTATAA
Found at i:14881655 original size:6 final size:6
Alignment explanation
Indices: 14881644--14881682 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
14881634 ATCGTCACAG
14881644 TCGTCT TCGTCT TCGTCT TCGTCT TCGTCT TCGTCT TCG
1 TCGTCT TCGTCT TCGTCT TCGTCT TCGTCT TCGTCT TCG
14881683 GTGGCTTCTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.18, T:0.49
Consensus pattern (6 bp):
TCGTCT
Found at i:14883965 original size:24 final size:24
Alignment explanation
Indices: 14883937--14883998 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
14883927 GTTCCCCCTC
* *
14883937 CAAACATTGTTTCGTCTTCCTCTG
1 CAAACATTGTTTCCTCTCCCTCTG
*
14883961 CAAACATTGTTCCCTCTCCCTCTG
1 CAAACATTGTTTCCTCTCCCTCTG
**
14883985 TGAACATTGTTTCC
1 CAAACATTGTTTCC
14883999 ACAAGCTCGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.11, T:0.39
Consensus pattern (24 bp):
CAAACATTGTTTCCTCTCCCTCTG
Found at i:14889513 original size:38 final size:36
Alignment explanation
Indices: 14889387--14889517 Score: 93
Period size: 37 Copynumber: 3.4 Consensus size: 36
14889377 TTTAGATTTG
* **
14889387 AAAAATATATATTTATATTATTAGAAAACCTATTTTA
1 AAAAATATATATTTA-ATTATTTGAAAATATATTTTA
* * * * * * *
14889424 AAAGATA-ATATATCACTATATTTAAAAATTTTAAATTGA
1 AAAAATATATAT-TTAAT-TATTTGAAAA-TAT-ATTTTA
14889463 AAAAGATATATATTTAGATTATTTGAAAATATATTTTA
1 AAAA-ATATATATTTA-ATTATTTGAAAATATATTTTA
14889501 AAAAATAATATATTTAA
1 AAAAAT-ATATATTTAA
14889518 ATTAGATTTT
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
36 5 0.07
37 19 0.27
38 18 0.26
39 9 0.13
40 14 0.20
41 5 0.07
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (36 bp):
AAAAATATATATTTAATTATTTGAAAATATATTTTA
Found at i:14895864 original size:145 final size:145
Alignment explanation
Indices: 14895672--14895956 Score: 441
Period size: 145 Copynumber: 2.0 Consensus size: 145
14895662 ACTCATGAAG
14895672 AAAACAAGCTCAGATTACTCGAAGAGAAAATGACAGACCAAAGAGTTGTAGAGAAAGTTCTTGTC
1 AAAACAAGCTCAGATTACTCGAAGAGAAAATGACAGACCAAAGAGTTGTAGAGAAAGTTCTTGTC
* *
14895737 AACT-TACCTAA-GAGGTTTGAATTCAAAACCTTTTCACTTGAAGACTCCAAAGACATGACCAAG
66 -ACTCTACC-AATGAGGCTTGAATTCAAAACCTATTCACTTGAAGACTCCAAAGACATGACCAAG
14895800 ATATCTTTGGCAAAATT
129 ATATCTTTGGCAAAATT
* * *
14895817 AAAACAAGCTCAGATTACTTGAAGAGGAGATGACAGA-CAACAGAGTTGTAGAGAAAGTTCTTGT
1 AAAACAAGCTCAGATTACTCGAAGAGAAAATGACAGACCAA-AGAGTTGTAGAGAAAGTTCTTGT
* * * *
14895881 CAGTCTACCAATGAGGCTTGAATTCAAAATCTATTCACTTGAAGACTCCGAAGACTTGACCAAGA
65 CACTCTACCAATGAGGCTTGAATTCAAAACCTATTCACTTGAAGACTCCAAAGACATGACCAAGA
14895946 TATCTTTGGCA
130 TATCTTTGGCA
14895957 GAATAAATGA
Statistics
Matches: 128, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
144 7 0.05
145 121 0.95
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (145 bp):
AAAACAAGCTCAGATTACTCGAAGAGAAAATGACAGACCAAAGAGTTGTAGAGAAAGTTCTTGTC
ACTCTACCAATGAGGCTTGAATTCAAAACCTATTCACTTGAAGACTCCAAAGACATGACCAAGAT
ATCTTTGGCAAAATT
Found at i:14898414 original size:26 final size:24
Alignment explanation
Indices: 14898385--14898440 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
14898375 TATATTTTGC
14898385 ATGATTTTACAATATATTTGCATGAT
1 ATGATTTTA-AATATA-TTGCATGAT
* *
14898411 ATGATTTTATATTTATTGCATGAT
1 ATGATTTTAAATATATTGCATGAT
14898435 ATGATT
1 ATGATT
14898441 ATATGTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 15 0.54
25 4 0.14
26 9 0.32
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.50
Consensus pattern (24 bp):
ATGATTTTAAATATATTGCATGAT
Found at i:14898434 original size:24 final size:24
Alignment explanation
Indices: 14898402--14898451 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
14898392 TACAATATAT
*
14898402 TTGCATGATATGATTTTATATTTA
1 TTGCATGATATGATTATATATTTA
*
14898426 TTGCATGATATGATTATATGTTTA
1 TTGCATGATATGATTATATATTTA
14898450 TT
1 TT
14898452 TGTATGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.14, T:0.54
Consensus pattern (24 bp):
TTGCATGATATGATTATATATTTA
Found at i:14898472 original size:18 final size:19
Alignment explanation
Indices: 14898434--14898478 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
14898424 TATTGCATGA
*
14898434 TATGATTATATGTTTATTTG
1 TATGATTATA-GTTTAATTG
14898454 TATGATTATA-TTTAATTG
1 TATGATTATAGTTTAATTG
14898472 TATGATT
1 TATGATT
14898479 TTGTGTGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (19 bp):
TATGATTATAGTTTAATTG
Found at i:14904690 original size:26 final size:27
Alignment explanation
Indices: 14904632--14904680 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
14904622 ATGTAAAAAA
14904632 AAAAGAAAGAAAGAAAAGGTAGAAACG
1 AAAAGAAAGAAAGAAAAGGTAGAAACG
14904659 AAAAGAAA-AAAG-AAAGGT-GAAA
1 AAAAGAAAGAAAGAAAAGGTAGAAA
14904681 AGTGAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 6 0.27
26 4 0.18
27 8 0.36
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.04
Consensus pattern (27 bp):
AAAAGAAAGAAAGAAAAGGTAGAAACG
Found at i:14906109 original size:18 final size:18
Alignment explanation
Indices: 14906088--14906137 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
14906078 TTTGCAACTT
14906088 TTGAAATCTTTACAAATC
1 TTGAAATCTTTACAAATC
* * *
14906106 TTGAAACCTTTATACATC
1 TTGAAATCTTTACAAATC
14906124 TTGCAAATCTTTAC
1 TTG-AAATCTTTAC
14906138 GTACCTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (18 bp):
TTGAAATCTTTACAAATC
Found at i:14906460 original size:42 final size:43
Alignment explanation
Indices: 14906413--14906546 Score: 155
Period size: 43 Copynumber: 3.1 Consensus size: 43
14906403 TATACATGAG
14906413 CCATTTCTTAA-TTAAAGTTATTGAGCCTCTGTATAGAGAAGC
1 CCATTTCTTAATTTAAAGTTATTGAGCCTCTGTATAGAGAAGC
* *
14906455 CCATTTCTTAATTTAAAGTTATTGTGCCTCTGTATA-AAAGAGC
1 CCATTTCTTAATTTAAAGTTATTGAGCCTCTGTATAGAGA-AGC
** * * * * * *
14906498 CCAACTCTTAATTTAAAGTTTTTAAACCTTTATATAGAGGAGC
1 CCATTTCTTAATTTAAAGTTATTGAGCCTCTGTATAGAGAAGC
14906541 CCATTT
1 CCATTT
14906547 ATTAGCCTCT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 13 0.17
43 61 0.81
44 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (43 bp):
CCATTTCTTAATTTAAAGTTATTGAGCCTCTGTATAGAGAAGC
Found at i:14906611 original size:43 final size:43
Alignment explanation
Indices: 14906550--14906681 Score: 176
Period size: 43 Copynumber: 3.0 Consensus size: 43
14906540 CCCATTTATT
*
14906550 AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTGTTA
1 AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTTTTA
14906593 AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTTTTGA
1 AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTTTT-A
* * * * *
14906637 A-CCTCTTTAGAAGGAAAAGCCCATTTCCTACTTTAAAGTTTTTA
1 AGCCTCTGTATAA--AGAAGCCCATTTCTTAATTTAAAGTTTTTA
14906681 A
1 A
14906682 AGTTGTTAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
43 50 0.62
44 4 0.05
45 26 0.32
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (43 bp):
AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTTTTA
Found at i:14906613 original size:71 final size:71
Alignment explanation
Indices: 14906480--14906617 Score: 188
Period size: 71 Copynumber: 1.9 Consensus size: 71
14906470 AAGTTATTGT
* * * *
14906480 GCCTCTGTATAAAAGAGCCCAACTCTTAATTTAAAGTTTTTAAACCTTTATATAGAGGAGCCCAT
1 GCCTCTGTATAAAAGAGCCCAACTCTTAATTTAAAGTTGTTAAACCTCTATATAAAGAAGCCCAT
14906545 TTATTA
66 TTATTA
** * *
14906551 GCCTCTGTAT-AAAGAAGCCCATTTCTTAATTTAAAGTTGTTAAGCCTCTGTATAAAGAAGCCCA
1 GCCTCTGTATAAAAG-AGCCCAACTCTTAATTTAAAGTTGTTAAACCTCTATATAAAGAAGCCCA
14906615 TTT
65 TTT
14906618 CTTAATTTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
70 4 0.07
71 54 0.93
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (71 bp):
GCCTCTGTATAAAAGAGCCCAACTCTTAATTTAAAGTTGTTAAACCTCTATATAAAGAAGCCCAT
TTATTA
Found at i:14906640 original size:114 final size:115
Alignment explanation
Indices: 14906430--14906640 Score: 336
Period size: 114 Copynumber: 1.8 Consensus size: 115
14906420 TTAATTAAAG
* **
14906430 TTATTGAGCCTCTGTATAGAGAAGCCCATTTCTTAATTTAAAGTTATTGTGCCTCTGTATAAAAG
1 TTATTGAGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTATTAAGCCTCTGTATAAAAG
14906495 AGCCCAACTCTTAATTTAAAGTTTTTAAACCTTTATATAGAGGAGCCCAT
66 AGCCCAACTCTTAATTTAAAGTTTTTAAACCTTTATATAGAGGAGCCCAT
*
14906545 TTATT-AGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTGTTAAGCCTCTGTAT-AAAG
1 TTATTGAGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTATTAAGCCTCTGTATAAAAG
** *
14906608 AAGCCCATTTCTTAATTTAAAGTTTTTGAACCT
66 -AGCCCAACTCTTAATTTAAAGTTTTTAAACCT
14906641 CTTTAGAAGG
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
113 4 0.05
114 79 0.90
115 5 0.06
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (115 bp):
TTATTGAGCCTCTGTATAAAGAAGCCCATTTCTTAATTTAAAGTTATTAAGCCTCTGTATAAAAG
AGCCCAACTCTTAATTTAAAGTTTTTAAACCTTTATATAGAGGAGCCCAT
Found at i:14907456 original size:86 final size:88
Alignment explanation
Indices: 14907355--14907544 Score: 330
Period size: 88 Copynumber: 2.2 Consensus size: 88
14907345 TGAAGTTTCT
* *
14907355 GGGTTGTTTTTTGGGATTATTTTGAATTTTGGGGATTAAGTG-A-TTTTTTTTGGGTTTTTGGGG
1 GGGTTGTTTTTTGGGATTATTTTGAATTTTGGGGATTAAGTGAATTTTTTTTTGGGTTCTTGGAG
14907418 ATTTTTAAAGATTATTAGGTTTG
66 ATTTTTAAAGATTATTAGGTTTG
14907441 GGGTTGTTTTTTGGGATTATTTTGAATTTTGGGGATTAAGTGAATTTTTTTTTGGGTTCTTGGAG
1 GGGTTGTTTTTTGGGATTATTTTGAATTTTGGGGATTAAGTGAATTTTTTTTTGGGTTCTTGGAG
* *
14907506 ATTTTTCAAGATTTTTAGGTTTG
66 ATTTTTAAAGATTATTAGGTTTG
14907529 GGGTTGTTTTTTGGGA
1 GGGTTGTTTTTTGGGA
14907545 GTTTGATTTG
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 42 0.43
87 1 0.01
88 55 0.56
ACGTcount: A:0.16, C:0.01, G:0.29, T:0.53
Consensus pattern (88 bp):
GGGTTGTTTTTTGGGATTATTTTGAATTTTGGGGATTAAGTGAATTTTTTTTTGGGTTCTTGGAG
ATTTTTAAAGATTATTAGGTTTG
Found at i:14908000 original size:27 final size:27
Alignment explanation
Indices: 14907953--14908008 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
14907943 TTTGTTTTTC
*
14907953 TTTTTCTTTATATTTTCA-TTTTATAT
1 TTTTTCTTTATATTTTAATTTTTATAT
14907979 TTTTATCTTTAT-TTTCTAATTTTTATAT
1 TTTT-TCTTTATATTT-TAATTTTTATAT
14908007 TT
1 TT
14908009 ATATTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 7 0.27
27 9 0.35
28 10 0.38
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTTCTTTATATTTTAATTTTTATAT
Found at i:14908016 original size:14 final size:14
Alignment explanation
Indices: 14907959--14908008 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
14907949 TTTCTTTTTC
*
14907959 TTTATATTTTCA-T
1 TTTATATTTTAATT
* *
14907972 TTTATATTTTTATC
1 TTTATATTTTAATT
14907986 TTTAT-TTTCTAATT
1 TTTATATTT-TAATT
14908000 TTTATATTT
1 TTTATATTT
14908009 ATATTTTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 14 0.47
14 13 0.43
15 3 0.10
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTATATTTTAATT
Found at i:14908021 original size:20 final size:20
Alignment explanation
Indices: 14907959--14908030 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
14907949 TTTCTTTTTC
14907959 TTTATATTT-TCATTTTATATT
1 TTTATATTTAT-ATTTT-TATT
* *
14907980 TTTATCTTTAT-TTTCTAATT
1 TTTATATTTATATTT-TTATT
*
14908000 TTTATATTTATATTTTT-GT
1 TTTATATTTATATTTTTATT
14908019 TTTATTATTTAT
1 TTTA-TATTTAT
14908031 TTATTTTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 5 0.12
20 24 0.57
21 12 0.29
22 1 0.02
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (20 bp):
TTTATATTTATATTTTTATT
Found at i:14908028 original size:28 final size:28
Alignment explanation
Indices: 14907971--14908036 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
14907961 TATATTTTCA
* *
14907971 TTTTATATTTTTATCTTTATTTTCTAAT
1 TTTTATATTTATATCTTTATTTTATAAT
* * *
14907999 TTTTATATTTATATTTTTGTTTTATTAT
1 TTTTATATTTATATCTTTATTTTATAAT
14908027 TTATT-TATTT
1 TT-TTATATTT
14908037 TAATTGTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 30 0.94
29 2 0.06
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (28 bp):
TTTTATATTTATATCTTTATTTTATAAT
Found at i:14908189 original size:18 final size:20
Alignment explanation
Indices: 14908146--14908195 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
14908136 GTTACATGTT
* *
14908146 ATGATTATATGTTTATTTGT
1 ATGATTATATGTTGATTTGC
14908166 ATGATTATAT-TTGA-TTGC
1 ATGATTATATGTTGATTTGC
*
14908184 ATGATTTTATGT
1 ATGATTATATGT
14908196 GACTTATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 12 0.46
19 4 0.15
20 10 0.38
ACGTcount: A:0.26, C:0.02, G:0.16, T:0.56
Consensus pattern (20 bp):
ATGATTATATGTTGATTTGC
Found at i:14915219 original size:27 final size:26
Alignment explanation
Indices: 14915174--14915233 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
14915164 TGTTTGGTAT
*
14915174 ATAAAATTATAATAGGATAAGA-TAA
1 ATAATATTATAATAGGATAAGATTAA
14915199 GATAATATTATGAATAGGATAAGATTAA
1 -ATAATATTAT-AATAGGATAAGATTAA
14915227 ATAATAT
1 ATAATAT
14915234 CATCCTATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 9 0.29
27 19 0.61
28 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (26 bp):
ATAATATTATAATAGGATAAGATTAA
Found at i:14929680 original size:20 final size:20
Alignment explanation
Indices: 14929633--14929685 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
14929623 TTTCATCTAG
14929633 AATTTAGGGTTTT-AGGCTT
1 AATTTAGGGTTTTAAGGCTT
* *
14929652 AACTTAGGGTTTTAAGGTTT
1 AATTTAGGGTTTTAAGGCTT
*
14929672 CATTTAGGGTTTTA
1 AATTTAGGGTTTTA
14929686 TTTCAAGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.23, C:0.06, G:0.25, T:0.47
Consensus pattern (20 bp):
AATTTAGGGTTTTAAGGCTT
Found at i:14930016 original size:24 final size:24
Alignment explanation
Indices: 14929950--14930016 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 24
14929940 AATTTTGTAC
*
14929950 TTTATATATTTTCTTTTAATTAAAAT
1 TTTAT-TATTTTATTTT-ATTAAAAT
* **
14929976 TTTACTATTATTA-TTTATTAATCT
1 TTTATTATT-TTATTTTATTAAAAT
14930000 TTTATTATTTTATTTTA
1 TTTATTATTTTATTTTA
14930017 AAAAATGGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 3 0.09
24 18 0.53
25 7 0.21
26 6 0.18
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTATTATTTTATTTTATTAAAAT
Found at i:14930201 original size:3 final size:3
Alignment explanation
Indices: 14930193--14930231 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14930183 GGTTTTAAAA
14930193 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14930232 TGTTATTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14930373 original size:3 final size:3
Alignment explanation
Indices: 14930361--14930416 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
14930351 ATCTTTTACA
*
14930361 TAT T-T TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14930408 TAT TAT TAT
1 TAT TAT TAT
14930417 GGAAATAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14937536 original size:17 final size:17
Alignment explanation
Indices: 14937514--14937548 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14937504 TTTCAATTGG
14937514 TGTTGTGTTACTAGTCT
1 TGTTGTGTTACTAGTCT
14937531 TGTTGTGTTACTAGTCT
1 TGTTGTGTTACTAGTCT
14937548 T
1 T
14937549 TTCTCTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.23, T:0.54
Consensus pattern (17 bp):
TGTTGTGTTACTAGTCT
Found at i:14947153 original size:22 final size:22
Alignment explanation
Indices: 14947099--14947142 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14947089 GGCGGGAAGG
14947099 AGAAGAAG-AAAGAAAAGAAAA
1 AGAAGAAGAAAAGAAAAGAAAA
*
14947120 AGAAGAAGAAAAGGAAAGAAAA
1 AGAAGAAGAAAAGAAAAGAAAA
14947142 A
1 A
14947143 AAGGGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (22 bp):
AGAAGAAGAAAAGAAAAGAAAA
Found at i:14947346 original size:22 final size:22
Alignment explanation
Indices: 14947320--14947363 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14947310 TGTATATTTA
*
14947320 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
14947342 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
14947364 GAAGATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:14951249 original size:22 final size:22
Alignment explanation
Indices: 14951218--14951261 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14951208 TGTATATTTA
* *
14951218 TATTTTTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
14951240 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
14951262 GAAGATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:14953844 original size:2 final size:2
Alignment explanation
Indices: 14953837--14953870 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
14953827 ACTTGCATTG
14953837 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14953871 GTTATAACTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14955631 original size:17 final size:17
Alignment explanation
Indices: 14955588--14955636 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
14955578 CTTAAGAACT
* *
14955588 AAAGCTTACTAAATATGG
1 AAAG-TTACTAAAAATGA
14955606 AAA-TTACTAAAAATGA
1 AAAGTTACTAAAAATGA
14955622 AAAGTTACTAAAAAT
1 AAAGTTACTAAAAAT
14955637 TAAATAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 14 0.50
17 11 0.39
18 3 0.11
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.27
Consensus pattern (17 bp):
AAAGTTACTAAAAATGA
Found at i:14964548 original size:2 final size:2
Alignment explanation
Indices: 14964541--14964575 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14964531 ATTATTATTT
14964541 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14964576 GTGTAACTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14971843 original size:6 final size:7
Alignment explanation
Indices: 14971829--14971853 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14971819 ATTTTTTACA
14971829 TTTATTT
1 TTTATTT
14971836 TTTATTT
1 TTTATTT
14971843 TTTATTT
1 TTTATTT
14971850 TTTA
1 TTTA
14971854 CTTGGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:14973073 original size:16 final size:16
Alignment explanation
Indices: 14973052--14973106 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
14973042 TTAGGGTGTC
*
14973052 ATTTTAGGGTTTCGAT
1 ATTTTAGGGTTTCGAA
* *
14973068 ATTTTAGGATTTTGAA
1 ATTTTAGGGTTTCGAA
14973084 ATTTTAGGGTTTC-AA
1 ATTTTAGGGTTTCGAA
14973099 ATTTTAGG
1 ATTTTAGG
14973107 ATTTTGGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 10 0.29
16 24 0.71
ACGTcount: A:0.25, C:0.04, G:0.22, T:0.49
Consensus pattern (16 bp):
ATTTTAGGGTTTCGAA
Found at i:14973103 original size:23 final size:22
Alignment explanation
Indices: 14973076--14973133 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 22
14973066 ATATTTTAGG
*
14973076 ATTTTGAAATTTTAGGGTTTCAA
1 ATTTTGAAATTTT-GGATTTCAA
* *
14973099 ATTTT-AGGATTTTGGATTTTAA
1 ATTTTGA-AATTTTGGATTTCAA
14973121 AGTTTTGAAATTT
1 A-TTTTGAAATTT
14973134 GTTGTTTGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
22 9 0.32
23 18 0.64
24 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (22 bp):
ATTTTGAAATTTTGGATTTCAA
Found at i:14973106 original size:31 final size:32
Alignment explanation
Indices: 14973052--14973112 Score: 106
Period size: 31 Copynumber: 1.9 Consensus size: 32
14973042 TTAGGGTGTC
*
14973052 ATTTTAGGGTTTCGATATTTTAGGATTTTGAA
1 ATTTTAGGGTTTCGAAATTTTAGGATTTTGAA
14973084 ATTTTAGGGTTTC-AAATTTTAGGATTTTG
1 ATTTTAGGGTTTCGAAATTTTAGGATTTTG
14973113 GATTTTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.25, C:0.03, G:0.21, T:0.51
Consensus pattern (32 bp):
ATTTTAGGGTTTCGAAATTTTAGGATTTTGAA
Found at i:14973117 original size:15 final size:15
Alignment explanation
Indices: 14973052--14973119 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 15
14973042 TTAGGGTGTC
* *
14973052 ATTTTAGGGTTTCGA
1 ATTTTAGGATTTTGA
14973067 TATTTTAGGATTTTGAA
1 -ATTTTAGGATTTTG-A
* **
14973084 ATTTTAGGGTTTCAA
1 ATTTTAGGATTTTGA
*
14973099 ATTTTAGGATTTTGG
1 ATTTTAGGATTTTGA
14973114 ATTTTA
1 ATTTTA
14973120 AAGTTTTGAA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
15 18 0.43
16 23 0.55
17 1 0.02
ACGTcount: A:0.25, C:0.03, G:0.21, T:0.51
Consensus pattern (15 bp):
ATTTTAGGATTTTGA
Found at i:14973133 original size:31 final size:31
Alignment explanation
Indices: 14973052--14973125 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
14973042 TTAGGGTGTC
* *
14973052 ATTTTAGGGTTTCGATATTTTAGGATTTTGAA
1 ATTTTAAGGTTTC-AAATTTTAGGATTTTGAA
* *
14973084 ATTTTAGGGTTTCAAATTTTAGGATTTTG-G
1 ATTTTAAGGTTTCAAATTTTAGGATTTTGAA
*
14973114 ATTTTAAAGTTT
1 ATTTTAAGGTTT
14973126 TGAAATTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 10 0.26
31 15 0.39
32 13 0.34
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (31 bp):
ATTTTAAGGTTTCAAATTTTAGGATTTTGAA
Found at i:14973215 original size:8 final size:8
Alignment explanation
Indices: 14973171--14973232 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
14973161 GGGTTTCAAA
14973171 TTTTAGGG
1 TTTTAGGG
*
14973179 TTTTGAAGGT
1 TTTT--AGGG
14973189 TTTTAAGGG
1 TTTT-AGGG
14973198 TTTT-GGG
1 TTTTAGGG
14973205 TTTTAGGG
1 TTTTAGGG
*
14973213 TTTTTAAGG
1 -TTTTAGGG
*
14973222 TTTTAAGG
1 TTTTAGGG
14973230 TTT
1 TTT
14973233 CCTAGTTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
7 7 0.15
8 18 0.38
9 15 0.32
10 7 0.15
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (8 bp):
TTTTAGGG
Found at i:14973231 original size:25 final size:27
Alignment explanation
Indices: 14973181--14973232 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
14973171 TTTTAGGGTT
14973181 TTGAAGGTTTTTAAGGGTTTT-GGGTT
1 TTGAAGGTTTTTAAGGGTTTTAGGGTT
* *
14973207 TT-AGGGTTTTTAA-GGTTTTAAGGTT
1 TTGAAGGTTTTTAAGGGTTTTAGGGTT
14973232 T
1 T
14973233 CCTAGTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 6 0.26
25 15 0.65
26 2 0.09
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (27 bp):
TTGAAGGTTTTTAAGGGTTTTAGGGTT
Found at i:14973631 original size:16 final size:16
Alignment explanation
Indices: 14973610--14973642 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14973600 TTTAACCTAA
14973610 TTATTATTATTATTTG
1 TTATTATTATTATTTG
14973626 TTATTATTATTATTTG
1 TTATTATTATTATTTG
14973642 T
1 T
14973643 CTTTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATTATTATTATTTG
Done.