Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 77 of 117
Found at i:15903979 original size:43 final size:40
Alignment explanation
Indices: 15903927--15904012 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 40
15903917 CTTTAATAAT
*
15903927 TAATATTATAT-TAATAATTTATTA-ATTTATTATAAGATATTA
1 TAATATTATATAT-ATAATTT-TTATATATATT-TAA-ATATTA
15903969 TAATAATTATATATATAATTTTTATATATATTTAAATATTA
1 TAAT-ATTATATATATAATTTTTATATATATTTAAATATTA
15904010 TAA
1 TAA
15904013 ATTGAGTTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
41 9 0.22
42 10 0.25
43 20 0.50
44 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (40 bp):
TAATATTATATATATAATTTTTATATATATTTAAATATTA
Found at i:15904772 original size:6 final size:6
Alignment explanation
Indices: 15904763--15904831 Score: 67
Period size: 6 Copynumber: 12.0 Consensus size: 6
15904753 TTTAAATTAA
*
15904763 TAATAT TAATAT TAAT-T T-ATAT TAATATT TAAATAT TAATAT AAATAT
1 TAATAT TAATAT TAATAT TAATAT TAATA-T T-AATAT TAATAT TAATAT
*
15904811 TAA-AT TAA-AC TAA-AT TAATAT
1 TAATAT TAATAT TAATAT TAATAT
15904832 ATTATCAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
4 2 0.04
5 17 0.31
6 27 0.50
7 4 0.07
8 4 0.07
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (6 bp):
TAATAT
Found at i:15904772 original size:19 final size:20
Alignment explanation
Indices: 15904744--15904831 Score: 75
Period size: 19 Copynumber: 4.7 Consensus size: 20
15904734 ATAATTTATT
15904744 ATAA-ATTAAT-TTAAATTA
1 ATAATATTAATATTAAATTA
15904762 ATAATATTAATATT-AATT-
1 ATAATATTAATATTAAATTA
15904780 -T-ATATTAATATTTAAA-TA
1 ATAATATTAATA-TTAAATTA
* *
15904798 TTAATATAAATATTAAATTAA
1 ATAATATTAATATTAAATT-A
15904819 ACTAA-ATTAATAT
1 A-TAATATTAATAT
15904832 ATTATCAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
16 9 0.16
17 4 0.07
18 6 0.11
19 16 0.28
20 11 0.19
21 8 0.14
22 3 0.05
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAATATTAATATTAAATTA
Found at i:15904807 original size:12 final size:12
Alignment explanation
Indices: 15904713--15904813 Score: 57
Period size: 12 Copynumber: 8.0 Consensus size: 12
15904703 ACTTAATTTG
15904713 TATAACATATTAA
1 TATAA-ATATTAA
15904726 -ATAAATATATAA
1 TATAAATAT-TAA
15904738 TTTATTATAA-ATTAA
1 --TA-TA-AATATTAA
* *
15904753 TTTAAATTAATAA
1 TATAAA-TATTAA
*
15904766 TATTAATATTAA
1 TATAAATATTAA
*
15904778 T-T-TATATTAA
1 TATAAATATTAA
15904788 TATTTAAATATTAA
1 TA--TAAATATTAA
15904802 TATAAATATTAA
1 TATAAATATTAA
15904814 ATTAAACTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 25
0.68 0.07 0.25
Matches are distributed among these distances:
10 8 0.12
11 7 0.10
12 25 0.36
13 10 0.14
14 9 0.13
15 4 0.06
16 4 0.06
17 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (12 bp):
TATAAATATTAA
Found at i:15904809 original size:20 final size:20
Alignment explanation
Indices: 15904719--15904815 Score: 66
Period size: 20 Copynumber: 5.1 Consensus size: 20
15904709 TTTGTATAAC
*
15904719 ATATTAA-ATAAATATAT-A
1 ATATTAATATAAATATTTAA
*
15904737 AT-TTATTATAAATTAATTTAA
1 ATATTAATATAAA-T-ATTTAA
* *
15904758 ATTAATAATATTAATA-TT-A
1 A-TATTAATATAAATATTTAA
*
15904777 AT-TT-ATATTAATATTTAA
1 ATATTAATATAAATATTTAA
15904795 ATATTAATATAAATA-TTAA
1 ATATTAATATAAATATTTAA
15904814 AT
1 AT
15904816 TAAACTAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
16 9 0.15
17 6 0.10
18 11 0.18
19 11 0.18
20 13 0.21
21 3 0.05
22 2 0.03
23 7 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATTAATATAAATATTTAA
Found at i:15904810 original size:36 final size:39
Alignment explanation
Indices: 15904719--15904813 Score: 117
Period size: 36 Copynumber: 2.5 Consensus size: 39
15904709 TTTGTATAAC
15904719 ATATTAA-ATAAATATATAATTTATTATAAATTAATTTAA
1 ATATTAATATAAATAT-TAATTTATTATAAATTAATTTAA
* * *
15904758 ATTAATAATATTAATATTAATTTA-TATTAA-T-ATTTAA
1 A-TATTAATATAAATATTAATTTATTATAAATTAATTTAA
15904795 ATATTAATATAAATATTAA
1 ATATTAATATAAATATTAA
15904814 ATTAAACTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
36 16 0.33
37 7 0.14
38 1 0.02
39 6 0.12
40 12 0.24
41 7 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (39 bp):
ATATTAATATAAATATTAATTTATTATAAATTAATTTAA
Found at i:15905482 original size:23 final size:22
Alignment explanation
Indices: 15905435--15905482 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
15905425 TAGTTTTATG
*
15905435 AATAATAATATACAATCTATTA
1 AATAATAATAAACAATCTATTA
* *
15905457 AATAATAATTAAATAATTTATTA
1 AATAATAA-TAAACAATCTATTA
15905480 AAT
1 AAT
15905483 TTAATACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
AATAATAATAAACAATCTATTA
Found at i:15905929 original size:17 final size:16
Alignment explanation
Indices: 15905895--15905955 Score: 56
Period size: 16 Copynumber: 3.8 Consensus size: 16
15905885 ACTAACATTA
*
15905895 TAATATT-ATATTTA-
1 TAATATTAATATTAAT
15905909 TAATAATTAATATTAAT
1 TAAT-ATTAATATTAAT
*
15905926 TAATTATTAATA-TAGT
1 TAA-TATTAATATTAAT
15905942 TAATATATAATATT
1 TAATAT-TAATATT
15905956 TGAATTAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
14 4 0.10
15 6 0.15
16 17 0.44
17 11 0.28
18 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
TAATATTAATATTAAT
Found at i:15906327 original size:14 final size:14
Alignment explanation
Indices: 15906308--15906340 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15906298 AGAAATATTA
15906308 TAATATATT-TATAT
1 TAATATATTATA-AT
15906322 TAATATATTATAAT
1 TAATATATTATAAT
15906336 TAATA
1 TAATA
15906341 AAATTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATATTATAAT
Found at i:15906374 original size:32 final size:32
Alignment explanation
Indices: 15906313--15906377 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
15906303 TATTATAATA
*
15906313 TATTTATATTAATATATTATAATTAATAAAAT
1 TATTAATATTAATATATTATAATTAATAAAAT
*
15906345 TATTAATATTAA-AT-TTCTAATTAATATAAAT
1 TATTAATATTAATATATTATAATTAATA-AAAT
15906376 TA
1 TA
15906378 ACAAATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 11 0.37
31 8 0.27
32 11 0.37
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (32 bp):
TATTAATATTAATATATTATAATTAATAAAAT
Found at i:15906385 original size:32 final size:32
Alignment explanation
Indices: 15906318--15906386 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
15906308 TAATATATTT
**
15906318 ATATTAATATATTATAATTAATAAAATTATTA
1 ATATTAATATATTATAATTAATAAAATTACAA
*
15906350 ATATTAA-AT-TTCTAATTAATATAAATTAACAA
1 ATATTAATATATTATAATTAATA-AAATT-ACAA
15906382 ATATT
1 ATATT
15906387 TTTATTTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 11 0.34
31 7 0.22
32 14 0.44
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (32 bp):
ATATTAATATATTATAATTAATAAAATTACAA
Found at i:15906440 original size:4 final size:4
Alignment explanation
Indices: 15906433--15906462 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
15906423 ATTAATTTTA
15906433 AATT AATT AATT AATT AATT AATTT AATT A
1 AATT AATT AATT AATT AATT AA-TT AATT A
15906463 TATACAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:15906450 original size:12 final size:13
Alignment explanation
Indices: 15906423--15906462 Score: 55
Period size: 12 Copynumber: 3.0 Consensus size: 13
15906413 ATTAATATTT
15906423 ATTAATTTTAAATTA
1 ATTAA-TTT-AATTA
15906438 ATTAA-TTAATTA
1 ATTAATTTAATTA
15906450 ATTAATTTAATTA
1 ATTAATTTAATTA
15906463 TATACAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.42
13 9 0.38
15 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTAATTTAATTA
Found at i:15906793 original size:12 final size:11
Alignment explanation
Indices: 15906770--15906818 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 11
15906760 ATAATATATC
15906770 AATATTACAAT
1 AATATTACAAT
15906781 AATATTAACAAT
1 AATATT-ACAAT
*
15906793 AATA--ATAAT
1 AATATTACAAT
*
15906802 AATATT-TAAT
1 AATATTACAAT
15906812 AATATTA
1 AATATTA
15906819 ATTTAATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
9 8 0.24
10 10 0.30
11 6 0.18
12 9 0.27
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATTACAAT
Found at i:15906813 original size:31 final size:34
Alignment explanation
Indices: 15906756--15906819 Score: 98
Period size: 31 Copynumber: 2.0 Consensus size: 34
15906746 GATTATCAGT
15906756 AATAATAATATATCAATATTACAATAATATTAAC
1 AATAATAATATATCAATATTACAATAATATTAAC
*
15906790 AATAATAATA-AT-AATATT-TAATAATATTAA
1 AATAATAATATATCAATATTACAATAATATTAA
15906820 TTTAATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 11 0.38
32 6 0.21
33 2 0.07
34 10 0.34
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (34 bp):
AATAATAATATATCAATATTACAATAATATTAAC
Found at i:15906841 original size:19 final size:19
Alignment explanation
Indices: 15906790--15906844 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
15906780 TAATATTAAC
*
15906790 AATAATAATAA-TAATATTT
1 AATAATAATAATTTA-ATTT
*
15906809 AATAATATTAATTTAATTT
1 AATAATAATAATTTAATTT
15906828 AATTAATAAT-ATTTAAT
1 AA-TAATAATAATTTAAT
15906845 CTTCATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 23 0.74
20 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATAATAATAATTTAATTT
Found at i:15907804 original size:17 final size:17
Alignment explanation
Indices: 15907762--15907814 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
15907752 AAATAATTGT
15907762 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
15907778 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
15907796 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
15907813 TA
1 TA
15907815 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:15907805 original size:22 final size:23
Alignment explanation
Indices: 15907764--15907819 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
15907754 ATAATTGTTA
15907764 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
15907785 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
15907807 AAAATATAATATA
1 TAATTATAATATA
15907820 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:15907846 original size:13 final size:13
Alignment explanation
Indices: 15907818--15907855 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
15907808 AAATATAATA
15907818 TAAATATTTAAATTT
1 TAAATA-TT-AATTT
15907833 TAAATATTAATTT
1 TAAATATTAATTT
15907846 TAAATATTAA
1 TAAATATTAA
15907856 AACTAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 15 0.65
14 2 0.09
15 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAAATATTAATTT
Found at i:15907979 original size:13 final size:13
Alignment explanation
Indices: 15907963--15907987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15907953 AATACAAATA
15907963 AATCTAATTATTT
1 AATCTAATTATTT
15907976 AATCTAATTATT
1 AATCTAATTATT
15907988 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:15908043 original size:21 final size:22
Alignment explanation
Indices: 15908013--15908067 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 22
15908003 AGTTTATTAT
15908013 ATAAACTATTGTTATAAATATA
1 ATAAACTATTGTTATAAATATA
* *
15908035 ATAAA-TATTG-CATGAATATA
1 ATAAACTATTGTTATAAATATA
*
15908055 ATAAATTATTGTT
1 ATAAACTATTGTT
15908068 TATTATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 13 0.46
21 10 0.36
22 5 0.18
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (22 bp):
ATAAACTATTGTTATAAATATA
Found at i:15908074 original size:20 final size:19
Alignment explanation
Indices: 15908004--15908085 Score: 58
Period size: 21 Copynumber: 4.0 Consensus size: 19
15907994 GTATTAATTA
*
15908004 GTTTATTAT-ATAAACTATT
1 GTTTAATATAATAAA-TATT
15908023 GTTATAAATATAATAAATATT
1 GTT-T-AATATAATAAATATT
* *
15908044 GCATGAATATAATAAATTATT
1 G-TTTAATATAATAAA-TATT
*
15908065 GTTTATTATAAATTAAATATT
1 GTTTAATAT-AA-TAAATATT
15908086 AATTTAAGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
19 3 0.06
20 17 0.34
21 20 0.40
22 10 0.20
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.46
Consensus pattern (19 bp):
GTTTAATATAATAAATATT
Found at i:15908448 original size:18 final size:18
Alignment explanation
Indices: 15908405--15908448 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15908395 AGGTTGAGGA
*
15908405 AAATTATATTATTATAAT
1 AAATTATATAATTATAAT
* * *
15908423 ATAGTATATAATTATTAT
1 AAATTATATAATTATAAT
15908441 AAATTATA
1 AAATTATA
15908449 ATTAATATAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATTATATAATTATAAT
Found at i:15908511 original size:19 final size:19
Alignment explanation
Indices: 15908455--15908504 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
15908445 TATAATTAAT
*
15908455 ATATAATTTATTAATATTA
1 ATATAATTTATTAACATTA
15908474 ATATAA-TTATTAACATTA
1 ATATAATTTATTAACATTA
15908492 A-ATAATTATATTA
1 ATATAATT-TATTA
15908505 TAATTAAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.14
18 13 0.46
19 11 0.39
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATAATTTATTAACATTA
Found at i:15908606 original size:21 final size:23
Alignment explanation
Indices: 15908575--15908620 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
15908565 TCAATTTTTT
15908575 ATAATTTAATATTTGAA-ATTAA
1 ATAATTTAATATTTGAATATTAA
15908597 ATAA-TTAATATTTGAATATTAA
1 ATAATTTAATATTTGAATATTAA
15908619 AT
1 AT
15908621 TGATATTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (23 bp):
ATAATTTAATATTTGAATATTAA
Found at i:15909411 original size:180 final size:180
Alignment explanation
Indices: 15909061--15909390 Score: 399
Period size: 180 Copynumber: 1.8 Consensus size: 180
15909051 AATCTCTTAC
* ** *
15909061 TTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAGTCCAAATAAGCTTGTACAAACAAA
1 TTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTAGTCCAAATAAAATAGTACAAACAAA
* * * * * * *
15909126 ACAATTGTTTTACGTTAAAAGAAAAGGTTATAACGATTTGAAATAGATAATCATTCATAGAGTCT
66 ACAATTGTTTGACGATAAAAAAAAAAGTTATAACGATTTGAAATAAATAATCATTCAAAGAGTCA
* * * **
15909191 TAACTATTTGAATTGGTTCAACTATTAGATTTGTTTTTTAATTTTTTTGG
131 AAACCATTTGAAATGGTTCAACTAGCAGATTTGTTTTTTAATTTTTTTGG
* * * **
15909241 TTATTAAGTTTTGAAATATTATTAAATTAGTATTATTTTATTCTAAATAAAATAGTATGAACAGA
1 TTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTAGTCCAAATAAAATAGTACAAACA-A
* * * * *
15909306 ACCAATTGTTTGATGATAAAATAAAAAAGTTATAACGATTTGAAATAAATAATTATTGAAATAGT
65 AACAATTGTTTGACGATAAAA-AAAAAAGTTATAACGATTTGAAATAAATAATCATTCAAAGAGT
*
15909371 GAAAACCATTTGAAATGGTT
129 CAAAACCATTTGAAATGGTT
15909391 TGGTAAGCAG
Statistics
Matches: 123, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
180 54 0.44
181 18 0.15
182 51 0.41
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (180 bp):
TTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTAGTCCAAATAAAATAGTACAAACAAA
ACAATTGTTTGACGATAAAAAAAAAAGTTATAACGATTTGAAATAAATAATCATTCAAAGAGTCA
AAACCATTTGAAATGGTTCAACTAGCAGATTTGTTTTTTAATTTTTTTGG
Found at i:15910140 original size:20 final size:20
Alignment explanation
Indices: 15910103--15910147 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15910093 TTTGGATTAA
*
15910103 AATATTAATATAATATATAT
1 AATATTAATATAAAATATAT
*
15910123 TATATATAAT-TAAAATATAT
1 AATAT-TAATATAAAATATAT
15910143 AATAT
1 AATAT
15910148 GCATTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATATTAATATAAAATATAT
Found at i:15910590 original size:181 final size:180
Alignment explanation
Indices: 15910170--15910748 Score: 531
Period size: 181 Copynumber: 3.2 Consensus size: 180
15910160 TAAGATATTA
* * * ** * * *
15910170 TTTCAAATCATTATCACCTTTTGTTTGGTCATATAACAATCGGTTTTTA-TCATACATGATTATT
1 TTTCAAATCATTATAACCTTTTGTTT-GTCATAAAATAAT-TATTTATATTCATACAAGCTTATT
* * * * *
15910234 CGAAATAAAATAATAAT-AATTTATTAATCTTTC-AAAAAT--TAA-TAAGAGATTTAAAAAATG
64 CAAAATAAAATAA-AATAAAATAATTAATATTCCAAAAAATAATAACTAAGAGATTTAAAAAAT-
* *
15910294 AATCTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAA-T-TCTAT
127 AATTTGTTTACCGAACCAGTTCAAATAGTTAAGACTATTTGAACAATTATCTAT
* * *
15910346 ACTTCAAATCATTATAACCTTTTGTTATGTCATAAAATAATTATTTATGTTTATACAAGCTTATT
1 -TTTCAAATCATTATAACCTTTTGTT-TGTCATAAAATAATTATTTATATTCATACAAGCTTATT
** * *
15910411 CAAAATAAAA-AAATACTAATCTAA-TAGTATTCCAAAAATTAATAACTAAG-GAATTTAAAAAA
64 CAAAATAAAATAAA-A-TAAAATAATTAATATTCCAAAAAATAATAACTAAGAG-ATTTAAAAAA
* * * *
15910473 TAAATTTATTTGCCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTAT
126 T-AATTTGTTTACCGAACCAGTTCAAATAGTTAAGACTATTTGAACAATTATCTAT
* * * * * *
15910529 TTTCAAATCGTTATGACGTTTTGTCTTGTCATAAAA-CATTTTCTTA-ATTCATACTAGCTTATT
1 TTTCAAATCATTATAACCTTTTGT-TTGTCATAAAATAATTAT-TTATATTCATACAAGCTTATT
* * *
15910592 CGAAATAAAATAAAATAAAATAATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAA
64 CAAAATAAAATAAAATAAAATAATTAATATTCCAAAAAATAATAACTAAGAGATTTAAAAAATAA
* * * * * *
15910657 TTTCGTTTACCTAACTAGTTCAAAAAATT-ATACTATTTGAACAATTATATA-
129 TTT-GTTTACCGAACCAGTTCAAATAGTTAAGACTATTTGAACAATTATCTAT
* * *
15910708 TTTCAAATCATTATTACTTTTTGTTTTGTTATAAAATAATT
1 TTTCAAATCATTATAACCTTTTG-TTTGTCATAAAATAATT
15910749 TATAGCTAAC
Statistics
Matches: 325, Mismatches: 57, Indels: 37
0.78 0.14 0.09
Matches are distributed among these distances:
175 1 0.00
176 7 0.02
177 62 0.19
178 9 0.03
179 30 0.09
180 38 0.12
181 134 0.41
182 38 0.12
183 6 0.02
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.39
Consensus pattern (180 bp):
TTTCAAATCATTATAACCTTTTGTTTGTCATAAAATAATTATTTATATTCATACAAGCTTATTCA
AAATAAAATAAAATAAAATAATTAATATTCCAAAAAATAATAACTAAGAGATTTAAAAAATAATT
TGTTTACCGAACCAGTTCAAATAGTTAAGACTATTTGAACAATTATCTAT
Found at i:15911030 original size:18 final size:17
Alignment explanation
Indices: 15910981--15911032 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
15910971 AATATAGAGA
15910981 TTATAATATTAATAA-T
1 TTATAATATTAATAATT
*
15910997 TTA-AATAGTAACTAATT
1 TTATAATATTAA-TAATT
15911014 TTATAATAATTAATAATT
1 TTATAAT-ATTAATAATT
15911032 T
1 T
15911033 AAATATCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 7 0.23
16 6 0.20
17 4 0.13
18 9 0.30
19 4 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TTATAATATTAATAATT
Found at i:15911239 original size:22 final size:22
Alignment explanation
Indices: 15911211--15911261 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
15911201 TTTATTAATC
*
15911211 TATAATTA-TAATTATGATTATT
1 TATAATTAGTAA-TATGATTATA
*
15911233 TATAATTAGTAATATTATTATA
1 TATAATTAGTAATATGATTATA
15911255 TA-AATTA
1 TATAATTA
15911262 AGTGATGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 18 0.69
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TATAATTAGTAATATGATTATA
Found at i:15911432 original size:11 final size:12
Alignment explanation
Indices: 15911411--15911498 Score: 65
Period size: 12 Copynumber: 7.2 Consensus size: 12
15911401 ATATATATTG
15911411 TTATATTTATAA
1 TTATATTTATAA
15911423 TTAT-TTTATAAA
1 TTATATTTAT-AA
* *
15911435 TAATATATATAA
1 TTATATTTATAA
**
15911447 -TATACATATATA
1 TTATATTTATA-A
* *
15911459 TAATATATATAGA
1 TTATATTTATA-A
15911472 -TATATTTATAA
1 TTATATTTATAA
15911483 TTATATTTATATA
1 TTATATTTATA-A
15911496 TTA
1 TTA
15911499 AATATAAATT
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
11 14 0.23
12 30 0.49
13 17 0.28
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (12 bp):
TTATATTTATAA
Found at i:15911444 original size:2 final size:2
Alignment explanation
Indices: 15911437--15911533 Score: 59
Period size: 2 Copynumber: 53.0 Consensus size: 2
15911427 TTTATAAATA
* *
15911437 AT AT AT AT A- AT AT AC AT AT AT AT A- AT AT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
15911477 TT AT A- AT -T AT AT TT AT AT AT -T AA AT AT AA AT -T A- AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
15911513 AT AT AT AT TT AA AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
15911534 TAAGTATTAA
Statistics
Matches: 70, Mismatches: 16, Indels: 18
0.67 0.15 0.17
Matches are distributed among these distances:
1 9 0.13
2 61 0.87
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:15911445 original size:24 final size:24
Alignment explanation
Indices: 15911413--15911533 Score: 82
Period size: 24 Copynumber: 5.2 Consensus size: 24
15911403 ATATATTGTT
*
15911413 ATATTTATAAT-TATTTTATAAATA
1 ATATATATAATATA-TTTATAAATA
** *
15911437 ATATATATAATATACATATATATA
1 ATATATATAATATATTTATAAATA
15911461 ATATATATAGATATATTTAT-AAT-
1 ATATATATA-ATATATTTATAAATA
*
15911484 -TATAT-TTATATA-TTA-AATATA
1 ATATATATAATATATTTATAA-ATA
15911505 A-AT-TAATAATATATATT-TAAATA
1 ATATAT-ATAATATAT-TTATAAATA
15911528 ATATAT
1 ATATAT
15911534 TAAGTATTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 25
0.69 0.08 0.23
Matches are distributed among these distances:
19 4 0.05
20 8 0.11
21 3 0.04
22 11 0.15
23 4 0.05
24 34 0.45
25 11 0.15
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (24 bp):
ATATATATAATATATTTATAAATA
Found at i:15911455 original size:15 final size:14
Alignment explanation
Indices: 15911429--15911533 Score: 65
Period size: 15 Copynumber: 7.1 Consensus size: 14
15911419 ATAATTATTT
15911429 TATAA-ATAATATA
1 TATAATATAATATA
15911442 TATAATATACATATA
1 TATAATATA-ATATA
*
15911457 TATAATATATATAGA
1 TATAATATA-ATATA
*
15911472 TATATTTATAATTATA
1 TATA-ATATAA-TATA
*
15911488 TTTATATATTAA-ATA
1 TATA-ATA-TAATATA
15911503 TA-AATTAATAATATA
1 TATAA-T-ATAATATA
15911518 TATTTAA-ATAATATA
1 TA--TAATATAATATA
15911533 T
1 T
15911534 TAAGTATTAA
Statistics
Matches: 74, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
13 6 0.08
14 8 0.11
15 42 0.57
16 13 0.18
17 3 0.04
18 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:15911504 original size:44 final size:45
Alignment explanation
Indices: 15911431--15911551 Score: 117
Period size: 44 Copynumber: 2.7 Consensus size: 45
15911421 AATTATTTTA
* *
15911431 TAAATAATATATATAA-TA-TACATATATATAATATATATAGATATATT
1 TAAATAATATAT-TAAGTATTAAATATA-ATATTA-ATA-AGATATATT
* *
15911478 TATAATTATAT-TTATA-TATTAAATATAA-ATTAATAATATATATT
1 TA-AATAATATATTA-AGTATTAAATATAATATTAATAAGATATATT
15911522 TAAATAATATATTAAGTATTAAATATAATA
1 TAAATAATATATTAAGTATTAAATATAATA
15911552 ACACTATAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
43 8 0.13
44 25 0.40
45 4 0.06
46 5 0.08
47 7 0.11
48 14 0.22
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.45
Consensus pattern (45 bp):
TAAATAATATATTAAGTATTAAATATAATATTAATAAGATATATT
Found at i:15911519 original size:54 final size:56
Alignment explanation
Indices: 15911391--15911520 Score: 142
Period size: 60 Copynumber: 2.3 Consensus size: 56
15911381 TAGTTATTAG
* *
15911391 ATAATAACTAATATATATTGTTATATTTATAATTATTTTATAAATAATATATATAAT
1 ATAATAA-TAATATATATAGATATATTTATAATTATTTTATAAATAATATATATAAT
*
15911448 ATACATATATATAATATATATAGATATATTTATAATTATATTTATATATTAA-ATATA-AAT
1 AT--A-ATA-ATAATATATATAGATATATTTATAATTAT-TTTATA-AATAATATATATAAT
15911508 -TAATAAT-ATATAT
1 ATAATAATAATATAT
15911521 TTAAATAATA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
54 6 0.09
55 2 0.03
56 3 0.05
57 3 0.05
59 2 0.03
60 32 0.50
61 12 0.19
62 4 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (56 bp):
ATAATAATAATATATATAGATATATTTATAATTATTTTATAAATAATATATATAAT
Found at i:15911740 original size:27 final size:26
Alignment explanation
Indices: 15911688--15911758 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 26
15911678 AGTATTATAA
15911688 ATTATTAAATAATTAATAACTTTAATTGTT
1 ATTATTAAATAA-TAATAA--TTAA-TGTT
15911718 ATTATTAAGATAATAATAA-TAATGTT
1 ATTATTAA-ATAATAATAATTAATGTT
*
15911744 ATAATT-AATAATAAT
1 ATTATTAAATAATAAT
15911759 TAAGATAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 8 0.21
25 1 0.03
26 9 0.23
27 3 0.08
30 14 0.36
31 4 0.10
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (26 bp):
ATTATTAAATAATAATAATTAATGTT
Found at i:15911876 original size:16 final size:16
Alignment explanation
Indices: 15911855--15911902 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
15911845 TAAATCTGTT
15911855 TTATAATATATAATAA
1 TTATAATATATAATAA
* * *
15911871 TTATAATAAATATTTA
1 TTATAATATATAATAA
*
15911887 TTATCATAT-TAATAA
1 TTATAATATATAATAA
15911902 T
1 T
15911903 ATTATCAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 5 0.20
16 20 0.80
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TTATAATATATAATAA
Found at i:15912181 original size:22 final size:22
Alignment explanation
Indices: 15912122--15912168 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
15912112 ATATCTCAAT
* *
15912122 TATTATTAATAATTATTATATA
1 TATTACTAATAATTAATATATA
15912144 TATTACTAATAATTAATATATA
1 TATTACTAATAATTAATATATA
15912166 TAT
1 TAT
15912169 ATATATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTACTAATAATTAATATATA
Found at i:15913091 original size:14 final size:14
Alignment explanation
Indices: 15913042--15913109 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
15913032 ATATATAAAT
15913042 TAATTATTAT-TAA
1 TAATTATTATATAA
* *
15913055 TAATAAATAATATAA
1 TAAT-TATTATATAA
* *
15913070 TAAATATTATCTAA
1 TAATTATTATATAA
* *
15913084 TTATTATTAAATAA
1 TAATTATTATATAA
15913098 TAATTATTATAT
1 TAATTATTATAT
15913110 TAACTAATAT
Statistics
Matches: 41, Mismatches: 12, Indels: 3
0.73 0.21 0.05
Matches are distributed among these distances:
13 4 0.10
14 31 0.76
15 6 0.15
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (14 bp):
TAATTATTATATAA
Found at i:15913129 original size:19 final size:20
Alignment explanation
Indices: 15913085--15913130 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
15913075 ATTATCTAAT
*
15913085 TATTATTAAATAATAATTAT
1 TATTATTAAATAATAATTAC
*
15913105 TA-TATTAACTAAT-ATTAC
1 TATTATTAAATAATAATTAC
15913123 TATTATTA
1 TATTATTA
15913131 TAGAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 15 0.65
20 2 0.09
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTATTAAATAATAATTAC
Found at i:15913684 original size:75 final size:74
Alignment explanation
Indices: 15913557--15913713 Score: 208
Period size: 75 Copynumber: 2.1 Consensus size: 74
15913547 TAAGGCAAGG
* * * *
15913557 GATCGATCAGTTGCTCAGATAGAATGTTCTCCAAGTTTGAAAACCCAAAAAAGGGATTGATCCCC
1 GATCGATCAGTTGCTCAAACAGAATGTTCTCCAAGTTTAAAAACCCAAAAAAGGCATTGATCCCC
15913622 TCTTAAAAGA
66 TCTT-AAAGA
* * * *
15913632 GATCGATCGGTTGCTCAAACATAATGTTC-CTCAAGTTTAAAAACCCAGAAAAGGCATTGATTCC
1 GATCGATCAGTTGCTCAAACAGAATGTTCTC-CAAGTTTAAAAACCCAAAAAAGGCATTGATCCC
*
15913696 CTCTTAAAGG
65 CTCTTAAAGA
15913706 GATCGATC
1 GATCGATC
15913714 CCCTCTTGAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
74 13 0.18
75 59 0.82
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (74 bp):
GATCGATCAGTTGCTCAAACAGAATGTTCTCCAAGTTTAAAAACCCAAAAAAGGCATTGATCCCC
TCTTAAAGA
Found at i:15913717 original size:20 final size:20
Alignment explanation
Indices: 15913694--15913733 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
15913684 GGCATTGATT
15913694 CCCTCTTAAAGGGATCGATC
1 CCCTCTTAAAGGGATCGATC
*
15913714 CCCTCTTGAAGGGATCGATC
1 CCCTCTTAAAGGGATCGATC
15913734 GAGTAAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (20 bp):
CCCTCTTAAAGGGATCGATC
Found at i:15919897 original size:15 final size:17
Alignment explanation
Indices: 15919866--15919897 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15919856 CTTTTTCGGT
15919866 TCATCTTCTTCCCAAAC
1 TCATCTTCTTCCCAAAC
15919883 TCATCTT-TT-CCAAAC
1 TCATCTTCTTCCCAAAC
15919898 CTTAAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (17 bp):
TCATCTTCTTCCCAAAC
Found at i:15922095 original size:54 final size:55
Alignment explanation
Indices: 15922013--15922127 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 55
15922003 ATCCCGTCTT
*
15922013 AAAAGAGATCGATCGATTGCTCAAACAGAATGATCCCCAAGTTCGAAAACCCA-A
1 AAAAGGGATCGATCGATTGCTCAAACAGAATGATCCCCAAGTTCGAAAACCCAGA
* * * * *
15922067 AAAAGGGATCGATCGGTTGCTCAGACAGAATGTTCCTCAAGTTTGAAAACCCAGA
1 AAAAGGGATCGATCGATTGCTCAAACAGAATGATCCCCAAGTTCGAAAACCCAGA
15922122 AAAAGG
1 AAAAGG
15922128 ATTGATCCCC
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
54 47 0.87
55 7 0.13
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.18
Consensus pattern (55 bp):
AAAAGGGATCGATCGATTGCTCAAACAGAATGATCCCCAAGTTCGAAAACCCAGA
Found at i:15923177 original size:21 final size:22
Alignment explanation
Indices: 15923151--15923191 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
15923141 AATTTATATA
15923151 ATTATAATTA-TATAATAACCG
1 ATTATAATTACTATAATAACCG
15923172 ATTATAATTACTATAATAAC
1 ATTATAATTACTATAATAAC
15923192 TTATTAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (22 bp):
ATTATAATTACTATAATAACCG
Found at i:15923774 original size:25 final size:28
Alignment explanation
Indices: 15923717--15923776 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 28
15923707 TTTAATATAA
15923717 ACAATATTAAATATATATTGTTTTAAATT
1 ACAATATTAAATATATATTG-TTTAAATT
15923746 --AATATT-AA-ATATATTG-TTAAATT
1 ACAATATTAAATATATATTGTTTAAATT
15923769 ACAATATT
1 ACAATATT
15923777 GTTAATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
23 7 0.24
25 14 0.48
26 2 0.07
27 6 0.21
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (28 bp):
ACAATATTAAATATATATTGTTTAAATT
Found at i:15923968 original size:29 final size:30
Alignment explanation
Indices: 15923908--15923972 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
15923898 TTATTAAGTA
*
15923908 AATATTTTAATTATATTATTAATAAATCAT
1 AATATATTAATTATATTATTAATAAATCAT
* *
15923938 AATATATTATATTATA-T-TTAATAATTTAT
1 AATATATTA-ATTATATTATTAATAAATCAT
15923967 AATATA
1 AATATA
15923973 AAATATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 16 0.52
30 9 0.29
31 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (30 bp):
AATATATTAATTATATTATTAATAAATCAT
Found at i:15923978 original size:29 final size:31
Alignment explanation
Indices: 15923917--15923992 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 31
15923907 AAATATTTTA
**
15923917 ATTATATTATTAATAAATCATAATATATTAT
1 ATTATATTATTAATAAATCATAATATAAAAT
* *
15923948 ATTATA-T-TTAATAATTTATAATATAAAAT
1 ATTATATTATTAATAAATCATAATATAAAAT
*
15923977 A-TAAATTAATTAATAA
1 ATTATATT-ATTAATAA
15923993 TAATTAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
28 3 0.08
29 20 0.54
30 1 0.03
31 13 0.35
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTATATTATTAATAAATCATAATATAAAAT
Found at i:15924089 original size:27 final size:26
Alignment explanation
Indices: 15924050--15924100 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
15924040 AATTGTTACT
15924050 TATAATTTATATTAAACTATAAATTA
1 TATAATTTATATTAAACTATAAATTA
*
15924076 TATAATATTATATTATACTATAAAT
1 TATAAT-TTATATTAAACTATAAAT
15924101 CAAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (26 bp):
TATAATTTATATTAAACTATAAATTA
Found at i:15924353 original size:19 final size:21
Alignment explanation
Indices: 15924325--15924379 Score: 87
Period size: 19 Copynumber: 2.7 Consensus size: 21
15924315 ATTAGAAACA
15924325 AATAAAATATTATTAAT-ATT
1 AATAAAATATTATTAATAATT
15924345 AAT-AAATATTATTAATAAATT
1 AATAAAATATTATTAAT-AATT
15924366 AATAAAATATTATT
1 AATAAAATATTATT
15924380 TTATAAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.41
20 3 0.09
21 6 0.19
22 10 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAAAATATTATTAATAATT
Found at i:15924450 original size:20 final size:20
Alignment explanation
Indices: 15924427--15924464 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15924417 GTTTATTGAA
15924427 TAGATT-AATAAATTAATAAT
1 TAGATTAAAT-AATTAATAAT
15924447 TAGATTAAATAATTAATA
1 TAGATTAAATAATTAATA
15924465 TTCATATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
TAGATTAAATAATTAATAAT
Found at i:15924667 original size:22 final size:22
Alignment explanation
Indices: 15924635--15924685 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
15924625 TATATTTAAC
15924635 TAAT-ATATATAT-ATTAATTAT
1 TAATAATATATATGA-TAATTAT
*
15924656 TAGTAATATATATGATAATTAT
1 TAATAATATATATGATAATTAT
15924678 TAATAATA
1 TAATAATA
15924686 ATTGAGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.12
22 22 0.85
23 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TAATAATATATATGATAATTAT
Found at i:15924949 original size:32 final size:34
Alignment explanation
Indices: 15924882--15924949 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 34
15924872 TTTTGATAAT
* **
15924882 ATTATTAATATGATAATAATACATATTTATTATA
1 ATTATTAATATGATAATAAAACATATTTAAAATA
*
15924916 ATTATT-ATAT-ATATTAAAACATATTTAAAATA
1 ATTATTAATATGATAATAAAACATATTTAAAATA
15924948 AT
1 AT
15924950 AATAAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 20 0.67
33 4 0.13
34 6 0.20
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (34 bp):
ATTATTAATATGATAATAAAACATATTTAAAATA
Found at i:15925082 original size:20 final size:21
Alignment explanation
Indices: 15925057--15925096 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15925047 TTAATAAATA
15925057 ATTATT-TTATAAATA-ATTTT
1 ATTATTATT-TAAATATATTTT
15925077 ATTATTATTTAAATATATTT
1 ATTATTATTTAAATATATTT
15925097 ATAACTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTATTTAAATATATTTT
Found at i:15925458 original size:14 final size:14
Alignment explanation
Indices: 15925439--15925465 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15925429 ACTTATTTAA
15925439 TTATTTATAATATT
1 TTATTTATAATATT
15925453 TTATTTATAATAT
1 TTATTTATAATAT
15925466 CAAAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATTTATAATATT
Found at i:15925844 original size:14 final size:14
Alignment explanation
Indices: 15925809--15925858 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
15925799 TTATTATTTA
*
15925809 ATTATAATTATAATT
1 ATTATAA-TATAAAT
*
15925824 AGT-TAAT-TAAAT
1 ATTATAATATAAAT
15925836 ATTACTAATATAAAT
1 ATTA-TAATATAAAT
15925851 ATTATAAT
1 ATTATAAT
15925859 GTTAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
12 6 0.21
13 1 0.03
14 11 0.38
15 11 0.38
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTATAATATAAAT
Found at i:15925849 original size:15 final size:13
Alignment explanation
Indices: 15925809--15925899 Score: 50
Period size: 12 Copynumber: 6.9 Consensus size: 13
15925799 TTATTATTTA
*
15925809 ATTATAATTATA-
1 ATTATAATTAAAT
15925821 ATTAGTTAATTAAAT
1 ATTA--TAATTAAAT
15925836 ATTACTAATATAAAT
1 ATTA-TAAT-TAAAT
15925851 ATTATAATGTTAAA-
1 ATTATAA--TTAAAT
*
15925865 AATA-AATT-AAT
1 ATTATAATTAAAT
15925876 AATTA-AATT-AAT
1 -ATTATAATTAAAT
*
15925888 ATTAAAATTAAA
1 ATTATAATTAAA
15925900 ATCCTTATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
10 2 0.03
11 6 0.09
12 18 0.28
13 4 0.06
14 17 0.26
15 17 0.26
16 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (13 bp):
ATTATAATTAAAT
Found at i:15925901 original size:18 final size:18
Alignment explanation
Indices: 15925860--15925901 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15925850 TATTATAATG
*
15925860 TTAAAAATAAATTAATAA
1 TTAAAATTAAATTAATAA
15925878 TT-AAATTAATATTAA-AA
1 TTAAAATTAA-ATTAATAA
15925895 TTAAAAT
1 TTAAAAT
15925902 CCTTATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAAATTAAATTAATAA
Found at i:15926099 original size:19 final size:20
Alignment explanation
Indices: 15926063--15926104 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
15926053 AATATAAAAT
* *
15926063 TATTATAATATTAGTAATAA
1 TATTATAATACTAATAATAA
15926083 TATT-TAATACTAATAATAA
1 TATTATAATACTAATAATAA
15926102 TAT
1 TAT
15926105 CATTATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TATTATAATACTAATAATAA
Found at i:15926190 original size:12 final size:12
Alignment explanation
Indices: 15926170--15926212 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
15926160 TTGTATTATT
15926170 ATAATTTTTAAA
1 ATAATTTTTAAA
* *
15926182 ATGATTTTTAAT
1 ATAATTTTTAAA
*
15926194 ATAATATTTAAAA
1 ATAAT-TTTTAAA
15926207 ATAATT
1 ATAATT
15926213 AGAAATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (12 bp):
ATAATTTTTAAA
Found at i:15926244 original size:23 final size:24
Alignment explanation
Indices: 15926179--15926245 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
15926169 TATAATTTTT
* * *
15926179 AAAATGATTTTTAATATAATATTTA
1 AAAATAATTATTAAT-TAATATTAA
* *
15926204 AAAATAATTA-GAAATAATATTAA
1 AAAATAATTATTAATTAATATTAA
15926227 AAAAT-ATTATTAATTAATA
1 AAAATAATTATTAATTAATA
15926246 ATAATTAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
22 4 0.12
23 20 0.59
24 2 0.06
25 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (24 bp):
AAAATAATTATTAATTAATATTAA
Found at i:15926435 original size:33 final size:34
Alignment explanation
Indices: 15926380--15926488 Score: 98
Period size: 33 Copynumber: 3.1 Consensus size: 34
15926370 TTAGTTGCTA
* *
15926380 ATAATTATTAAAT-TATTTATAAATTATTAATT-T
1 ATAA-TATTTAATATATTAATAAATTATTAATTAT
* *
15926413 ATTATATTTAATATATTAATAAAATA-TAATTAT
1 ATAATATTTAATATATTAATAAATTATTAATTAT
*
15926446 ATAATATTTAATTATATAATTAATAAATTATTTATTAT
1 ATAATATTT-A--ATAT-ATTAATAAATTATTAATTAT
15926484 GATAA
1 -ATAA
15926489 AGTAATTGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
32 12 0.20
33 23 0.38
34 1 0.02
36 4 0.07
37 11 0.18
38 6 0.10
39 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (34 bp):
ATAATATTTAATATATTAATAAATTATTAATTAT
Found at i:15926447 original size:8 final size:8
Alignment explanation
Indices: 15926436--15926476 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
15926426 TATTAATAAA
15926436 ATATAATT
1 ATATAATT
15926444 ATATAA-T
1 ATATAATT
*
15926451 ATTTAATT
1 ATATAATT
15926459 ATATAATT
1 ATATAATT
15926467 A-ATAAATT
1 ATAT-AATT
15926475 AT
1 AT
15926477 TTATTATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
7 8 0.29
8 20 0.71
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
ATATAATT
Found at i:15926457 original size:15 final size:15
Alignment explanation
Indices: 15926406--15926465 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
15926396 TTATAAATTA
*
15926406 TTAATT-TATTATAT
1 TTAATTATATAATAT
*
15926420 TTAATATATTAATAAAAT
1 TTAAT-TA-T-ATAATAT
*
15926438 ATAATTATATAATAT
1 TTAATTATATAATAT
15926453 TTAATTATATAAT
1 TTAATTATATAAT
15926466 TAATAAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 5 0.14
15 19 0.51
16 1 0.03
17 3 0.08
18 9 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATTATATAATAT
Found at i:15926466 original size:23 final size:23
Alignment explanation
Indices: 15926436--15926488 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
15926426 TATTAATAAA
15926436 ATATAATT-ATATAA-TATTTAATT
1 ATATAATTAATA-AATTATTT-ATT
15926459 ATATAATTAATAAATTATTTATT
1 ATATAATTAATAAATTATTTATT
15926482 ATGATAA
1 AT-ATAA
15926489 AGTAATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATAATTAATAAATTATTTATT
Found at i:15926885 original size:13 final size:14
Alignment explanation
Indices: 15926867--15926895 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
15926857 TTAAGATAAC
15926867 TAATATAA-TATTT
1 TAATATAACTATTT
15926880 TAATATAACTATTT
1 TAATATAACTATTT
15926894 TA
1 TA
15926896 TGTTATAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATAACTATTT
Found at i:15927340 original size:14 final size:14
Alignment explanation
Indices: 15927319--15927354 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15927309 AAGAAAAATC
*
15927319 AAAATAAAATAAAA
1 AAAATAAAAAAAAA
*
15927333 AGAATAAAAAAAAA
1 AAAATAAAAAAAAA
15927347 AAAATAAA
1 AAAATAAA
15927355 GCCCATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (14 bp):
AAAATAAAAAAAAA
Found at i:15927444 original size:36 final size:36
Alignment explanation
Indices: 15927404--15927474 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
15927394 CCCCATTAAG
* *
15927404 CCAGGCCTGATGGGCTTCGGCCCAGACCTTATTGAA
1 CCAGGCCTGATGGGCTTAGGCCCAAACCTTATTGAA
15927440 CCAGGCCTGATGGGCTTAGGCCCAAACCTTATTGA
1 CCAGGCCTGATGGGCTTAGGCCCAAACCTTATTGA
15927475 TGTCTATAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.23
Consensus pattern (36 bp):
CCAGGCCTGATGGGCTTAGGCCCAAACCTTATTGAA
Found at i:15927657 original size:43 final size:41
Alignment explanation
Indices: 15927604--15927686 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 41
15927594 AAGTAAACAA
* *
15927604 GGCTCCTCTAAACAGGGGCTCAACAACTTTAAGAAAAATAAAT
1 GGCTCCTCTAAACAGAGGCACAACAACTTT--GAAAAATAAAT
* *
15927647 GGCTTCTCTAAACAGAGGCACAACAGCTTTGAAAAATAAA
1 GGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAATAAA
15927687 AGCTCATTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 10 0.28
43 26 0.72
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (41 bp):
GGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAATAAAT
Found at i:15927998 original size:20 final size:20
Alignment explanation
Indices: 15927961--15927998 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15927951 CACATCCAAA
* *
15927961 AGTTCAAAGTTTCTCATTCG
1 AGTTCAAAGATTCACATTCG
15927981 AGTTCAAAGATTCACATT
1 AGTTCAAAGATTCACATT
15927999 TGATAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (20 bp):
AGTTCAAAGATTCACATTCG
Found at i:15928070 original size:22 final size:22
Alignment explanation
Indices: 15928029--15928195 Score: 189
Period size: 22 Copynumber: 7.5 Consensus size: 22
15928019 CATCTAAAAA
*
15928029 ATTCTCATTTGAA-ACTCAAAT
1 ATTCTCATTTGAAGACTCAAAG
*
15928050 ATTCTTATTTGAAGACTCAAAG
1 ATTCTCATTTGAAGACTCAAAG
*
15928072 ATTCTCATTTGAAAACTCAAAG
1 ATTCTCATTTGAAGACTCAAAG
* *
15928094 ATTCTCATTTGAAGATTCAAAT
1 ATTCTCATTTGAAGACTCAAAG
15928116 ATTCTCATTTG-AGAACTCAAAG
1 ATTCTCATTTGAAG-ACTCAAAG
* *
15928138 ATTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTTGAAGA---CTCAAAG
*
15928163 ATTCTCATTT-AAGACT-AAAA
1 ATTCTCATTTGAAGACTCAAAG
15928183 ATTTCTCATTTGA
1 A-TTCTCATTTGA
15928196 GGGTTCACAA
Statistics
Matches: 125, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
20 4 0.03
21 25 0.20
22 76 0.61
23 1 0.01
24 3 0.02
25 16 0.13
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (22 bp):
ATTCTCATTTGAAGACTCAAAG
Found at i:15928695 original size:63 final size:63
Alignment explanation
Indices: 15928607--15928997 Score: 312
Period size: 63 Copynumber: 6.2 Consensus size: 63
15928597 GCAAGGTTAA
* * * * * **
15928607 AACAAGTTTCGTCCTCCATCATTTGGTCACCACTCATAGGCTTATTAGCACTAGCCATTTTAG
1 AACAAATTTCATCCTTCATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAG
* * * * *
15928670 AACAAATTTCATCCTTCATCATTTGGTCACCATTCATAGGCTTCTTAGCACCAGCCATTTCAA
1 AACAAATTTCATCCTTCATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAG
** ** *
15928733 AACAAATTTTGT-CTTCTATCACTTGGTCACCACT-ATAAAACTT-TTCAGCACTAGCTATTCCA
1 AACAAATTTCATCCTTC-ATCACTTGGTCACCACTCAT-AGGCTTCTT-AGCACTAGCCATTCCA
*
15928795 A
63 G
* ** * * * * * * *
15928796 AACACA-TTCTATTTTTTATCACTTGATCACCACTCATAGGATTCTCAGTAGTAGCCATTCTAG
1 AACAAATTTC-ATCCTTCATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAG
* ** * * * *
15928859 AACAAATTTCATCCTTCATCATTTGGTCATTACTCACAGGCTTCTTAACATTAG-CAGTTTCA-
1 AACAAATTTCATCCTTCATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCA-TTCCAG
* *
15928921 AACAAA-TTCTAT-CTTCTATCACTTGGTCACCACTCATAGGCTTCTCAGCATTAGCCATTCCAG
1 AACAAATTTC-ATCCTTC-ATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAG
* *
15928984 AATAAATTTTATCC
1 AACAAATTTCATCC
15928998 ATTGCCCCAT
Statistics
Matches: 256, Mismatches: 57, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
61 7 0.03
62 55 0.21
63 183 0.71
64 11 0.04
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (63 bp):
AACAAATTTCATCCTTCATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAG
Found at i:15928949 original size:62 final size:62
Alignment explanation
Indices: 15928561--15928975 Score: 193
Period size: 63 Copynumber: 6.6 Consensus size: 62
15928551 TATCATTTTT
* * * * * * * * *
15928561 ATCACTTGATCATCATTCACAGGCTTTTCAACATTAGCAAGGTTAAAACAAGTTTCGTCCTCC
1 ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAGC-AGTTTCAAACAAATTTCATCCTTC
* * * * * * *
15928624 ATCATTTGGTCACCACTCATAGGCTTATTAGCACTAGCCA-TTTTAGAACAAATTTCATCCTTC
1 ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAG-CAGTTTCA-AACAAATTTCATCCTTC
* * * * * ** **
15928687 ATCATTTGGTCACCATTCATAGGCTTCTTAGCACCAGCCA-TTTCAAAACAAATTTTGT-CTTC
1 ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAG-CAGTTTC-AAACAAATTTCATCCTTC
* ** * * * * * **
15928749 TATCACTTGGTCACCACT-ATAAAACTTTTCAGCACTAGCTA-TTCCAAAACACA-TTCTATTTT
1 -ATCACTTGGTCACCACTCA-CAGGCTTCTCAACATTAGC-AGTTTC-AAACAAATTTC-ATCCT
*
15928811 TT
61 TC
* * * ** *
15928813 ATCACTTGATCACCACTCATAGGATTCTCAGTAGTAGCCA--TTCTAGAACAAATTTCATCCTTC
1 ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAG-CAGTTTC-A-AACAAATTTCATCCTTC
* ** *
15928876 ATCATTTGGTCATTACTCACAGGCTTCTTAACATTAGCAGTTTCAAACAAA-TTCTAT-CTTC
1 ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAGCAGTTTCAAACAAATTTC-ATCCTTC
* *
15928937 TATCACTTGGTCACCACTCATAGGCTTCTCAGCATTAGC
1 -ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAGC
15928976 CATTCCAGAA
Statistics
Matches: 272, Mismatches: 64, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
61 7 0.03
62 56 0.21
63 197 0.72
64 12 0.04
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (62 bp):
ATCACTTGGTCACCACTCACAGGCTTCTCAACATTAGCAGTTTCAAACAAATTTCATCCTTC
Found at i:15929789 original size:18 final size:18
Alignment explanation
Indices: 15929768--15929812 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
15929758 TTTCCCATTC
15929768 TTTCATTTTTTTTTCTTT
1 TTTCATTTTTTTTTCTTT
15929786 TTTCA-TTTTTTTTCTTT
1 TTTCATTTTTTTTTCTTT
*
15929803 TCTCATTTTT
1 TTTCATTTTT
15929813 CATCCATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTCATTTTTTTTTCTTT
Found at i:15929811 original size:24 final size:21
Alignment explanation
Indices: 15929773--15929815 Score: 59
Period size: 24 Copynumber: 1.9 Consensus size: 21
15929763 CATTCTTTCA
15929773 TTTTTTTTTCTTTTTTCATTT
1 TTTTTTTTTCTTTTTTCATTT
15929794 TTTTTCTTTTCTCATTTTTCAT
1 TTTTT-TTTTCT--TTTTTCAT
15929816 CCATTAGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
24 8 0.42
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTTTTCTTTTTTCATTT
Found at i:15933780 original size:63 final size:63
Alignment explanation
Indices: 15933687--15934152 Score: 346
Period size: 63 Copynumber: 7.6 Consensus size: 63
15933677 TAATGGACAA
* *
15933687 AATTTATTCTAGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
1 AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
* * * * *
15933750 AATTTGTTCTGGAATGGTTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAACAG
1 AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
* * * * *
15933813 AATTTGTT-TGAAACT-GCTAATGCTAAGAAGCCTGTAAGTGGTGACCAAATGAT-GAAGGAT-G
1 AATTTGTTCTGGAA-TAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAA-GATAG
* * * *
15933874 AAATTTATTCTGG-A-A--T-G-GCT------TCTATGAGTGGTGATCAAGTGATAGAAAATAG
1 -AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
* * * * *
15933926 AATTTGTTTTGGAATAGCTAGTGCTGAGAAGCTTATGAGTGGTGACCAAGTGGTAGAAGATAA
1 AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
* * * * * * * *
15933989 AATTTATTTTGAAATAGTTAATGCT-AGAAAGCCTATGAGTGGTGACCAAATAAT-GATTGAT-G
1 AATTTGTTCTGGAATAGCTAGTGCTAAG-AAGCCTATGAGTGGTGACCAAGTGATAGA-AGATAG
** * * * *
15934051 AAATTTGTTCTAAAATGGCTAGTGCTAAGAAGCCTATAAGTGTTGACCAAATGAT-GAAAGAT-G
1 -AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAG-AAGATAG
* * * *
15934114 AAACTTGTTCT-GAACTGGCTAATGCTGAGAAGCCTATGA
1 -AATTTGTTCTGGAA-TAGCTAGTGCTAAGAAGCCTATGA
15934153 ATGATAATCA
Statistics
Matches: 320, Mismatches: 58, Indels: 50
0.75 0.14 0.12
Matches are distributed among these distances:
51 30 0.09
52 5 0.02
53 1 0.00
55 1 0.00
56 1 0.00
57 6 0.02
59 1 0.00
61 4 0.01
62 51 0.16
63 217 0.68
64 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.29
Consensus pattern (63 bp):
AATTTGTTCTGGAATAGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAG
Found at i:15934544 original size:21 final size:21
Alignment explanation
Indices: 15934520--15934606 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
15934510 ATTGTGAACC
15934520 CTTAAATGAGAATCTTTAAGT
1 CTTAAATGAGAATCTTTAAGT
* *
15934541 CTTAAGTGAAAATCTTTAAGAAAT
1 CTTAAATGAGAATCTTTAAG---T
* *
15934565 CTTCAAATGAGAATCCTTGAGT
1 CTT-AAATGAGAATCTTTAAGT
* *
15934587 ATTAAATGAGAATTTTTAAG
1 CTTAAATGAGAATCTTTAAG
15934607 AAATACCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
21 32 0.62
22 3 0.06
24 4 0.08
25 13 0.25
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (21 bp):
CTTAAATGAGAATCTTTAAGT
Found at i:15934578 original size:46 final size:46
Alignment explanation
Indices: 15934523--15934610 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
15934513 GTGAACCCTT
* * *
15934523 AAATGAGAATCTTTAAGTCTTAAGTGAAAATCTTTAAGAAATCTTC
1 AAATGAGAATCCTTAAGTATTAAATGAAAATCTTTAAGAAATCTTC
* * *
15934569 AAATGAGAATCCTTGAGTATTAAATGAGAATTTTTAAGAAAT
1 AAATGAGAATCCTTAAGTATTAAATGAAAATCTTTAAGAAAT
15934611 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (46 bp):
AAATGAGAATCCTTAAGTATTAAATGAAAATCTTTAAGAAATCTTC
Found at i:15935125 original size:27 final size:27
Alignment explanation
Indices: 15935082--15935143 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
15935072 AAAATTTTAT
15935082 TAATTAATTATTCAAAT-TAATAATATTA
1 TAATT-ATTATTCAAATATAATAA-ATTA
*
15935110 TAATTATTAATT-AAATATAATTAATTA
1 TAATTATT-ATTCAAATATAATAAATTA
15935137 TAATTAT
1 TAATTAT
15935144 ATTATAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
TAATTATTATTCAAATATAATAAATTA
Found at i:15935140 original size:20 final size:20
Alignment explanation
Indices: 15935110--15935178 Score: 68
Period size: 20 Copynumber: 3.3 Consensus size: 20
15935100 AATAATATTA
15935110 TAATTATTAATTAAATATAAT
1 TAATTA-TAATTAAATATAAT
*
15935131 TAATTATAATTATATTATAA-
1 TAATTATAATTA-AATATAAT
* *
15935151 TGATTATAATTAATAGATAAT
1 TAATTATAATTAA-ATATAAT
15935172 TATATTA
1 TA-ATTA
15935179 ATTTATTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.03
20 21 0.54
21 13 0.33
22 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (20 bp):
TAATTATAATTAAATATAAT
Found at i:15935225 original size:20 final size:21
Alignment explanation
Indices: 15935189--15935228 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
15935179 ATTTATTTAT
15935189 TTATTACTTAAAATTAATAAA
1 TTATTACTTAAAATTAATAAA
*
15935210 TTATTA-TTAGAATTAATAA
1 TTATTACTTAAAATTAATAA
15935229 TAGTACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (21 bp):
TTATTACTTAAAATTAATAAA
Found at i:15936844 original size:22 final size:22
Alignment explanation
Indices: 15936800--15936844 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
15936790 CTTTTTCTCA
*
15936800 AAAAATATTTGTTAGAATCCTT
1 AAAAATATTTGTTAGAAACCTT
* *
15936822 AAAAATATTTTTTAGAAAGCTT
1 AAAAATATTTGTTAGAAACCTT
15936844 A
1 A
15936845 TTTTCAAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (22 bp):
AAAAATATTTGTTAGAAACCTT
Found at i:15937010 original size:14 final size:13
Alignment explanation
Indices: 15936989--15937031 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
15936979 TTTAATCAAT
15936989 AAAT-AATAATAA
1 AAATAAATAATAA
15937001 TAAATAAATATATAA
1 -AAATAAATA-ATAA
15937016 AAATAAA-AATAA
1 AAATAAATAATAA
15937028 AAAT
1 AAAT
15937032 GAAAAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 8 0.29
13 5 0.18
14 11 0.39
15 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATAAATAATAA
Found at i:15937015 original size:21 final size:20
Alignment explanation
Indices: 15936986--15937028 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
15936976 TAATTTAATC
*
15936986 AATAAATAATAATAATAAATA
1 AATAAATAAAAATAA-AAATA
*
15937007 AATATATAAAAATAAAAATA
1 AATAAATAAAAATAAAAATA
15937027 AA
1 AA
15937029 AATGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAAATAAAAATAAAAATA
Found at i:15937029 original size:5 final size:6
Alignment explanation
Indices: 15936916--15937037 Score: 57
Period size: 6 Copynumber: 18.3 Consensus size: 6
15936906 TTAAAGAAAT
* *
15936916 AATAAA AATAAA AATAAA GAAT-AA AATAAA TAAAATAA AATAAGA AATACTA
1 AATAAA AATAAA AATAAA -AATAAA AATAAA -AATA-AA AATAA-A AATA-AA
* ** * *
15936968 AATAAT TCTAATTT AATCAATA AATAAT AATAATA AATAAA TATATAAA
1 AATAAA AATAA--A AAT-AA-A AATAAA AATAA-A AATAAA -A-ATAAA
15937017 AATAAA AATAAA AATGAAA AA
1 AATAAA AATAAA AAT-AAA AA
15937038 AAATTTGAGA
Statistics
Matches: 91, Mismatches: 12, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
5 3 0.03
6 40 0.44
7 33 0.36
8 13 0.14
9 2 0.02
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (6 bp):
AATAAA
Found at i:15937038 original size:20 final size:21
Alignment explanation
Indices: 15936991--15937031 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15936981 TAATCAATAA
* *
15936991 ATAATAATAATAAATAAATAT
1 ATAAAAATAATAAATAAAAAT
15937012 ATAAAAATAA-AAATAAAAAT
1 ATAAAAATAATAAATAAAAAT
15937032 GAAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAAAAATAATAAATAAAAAT
Found at i:15937553 original size:12 final size:12
Alignment explanation
Indices: 15937512--15937553 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
15937502 GAAAATTTTT
15937512 AAAAAATT-TCC
1 AAAAAATTCTCC
*
15937523 AAAAAAATTCGCC
1 -AAAAAATTCTCC
15937536 -AAAAATTCTCC
1 AAAAAATTCTCC
15937547 AAAAAAT
1 AAAAAAT
15937554 CCTGAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 10 0.38
12 14 0.54
13 2 0.08
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.21
Consensus pattern (12 bp):
AAAAAATTCTCC
Found at i:15937843 original size:22 final size:20
Alignment explanation
Indices: 15937801--15937870 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 20
15937791 AAATCAAATC
*
15937801 AAATAAAAAAATGTTAATAGAT
1 AAATAAAAAAA--ATAATAGAT
*
15937823 AATTAAAAGAAAATAATTAGAT
1 AAATAAAA-AAAATAA-TAGAT
*
15937845 AAATAAAAATAATAATAGAT
1 AAATAAAAAAAATAATAGAT
15937865 AAATAA
1 AAATAA
15937871 TAATATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 11 0.26
21 9 0.21
22 19 0.45
23 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
AAATAAAAAAAATAATAGAT
Found at i:15937847 original size:18 final size:19
Alignment explanation
Indices: 15937832--15938006 Score: 96
Period size: 18 Copynumber: 9.3 Consensus size: 19
15937822 TAATTAAAAG
15937832 AAAATAAT-TAGATAAATA
1 AAAATAATATAGATAAATA
15937850 AAAATAATAATAGATAAATA
1 AAAATAAT-ATAGATAAATA
* * *
15937870 ATAAT-ATATAAATAGATA
1 AAAATAATATAGATAAATA
* *
15937888 ATAATAATA-A-ATACATA
1 AAAATAATATAGATAAATA
* * * *
15937905 TATATTA-ACAGATAAATA
1 AAAATAATATAGATAAATA
* * *
15937923 ATAA-AATATATATTAATA
1 AAAATAATATAGATAAATA
* *
15937941 AATAGTAATAATAAATAAATA
1 AA-AATAAT-ATAGATAAATA
*
15937962 ATAAATACATA-AGATAAAAA
1 A-AAATA-ATATAGATAAATA
*
15937982 ATAAATAA-ATAAATAAATA
1 A-AAATAATATAGATAAATA
15938001 AAAATA
1 AAAATA
15938007 TAAAATACAA
Statistics
Matches: 120, Mismatches: 25, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
16 1 0.01
17 11 0.09
18 45 0.38
19 15 0.12
20 31 0.26
21 14 0.12
22 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAATAATATAGATAAATA
Found at i:15937870 original size:4 final size:4
Alignment explanation
Indices: 15937833--15938002 Score: 83
Period size: 4 Copynumber: 43.8 Consensus size: 4
15937823 AATTAAAAGA
* * * * *
15937833 AAAT AATT AGAT AAAT AAAA ATAAT -AAT AGAT AAAT -AAT -AAT ATAT
1 AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * *
15937879 AAAT AGAT -AAT -AAT -AAT AAAT ACATAT ATAT TAAC AGAT AAAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT AAAT AAAT AAAT
* * * *
15937925 AAA- ATAT ATAT TAAT AAAT AGTAAT -AAT AAAT AAAT -AAT AAAT ACAT
1 AAAT AAAT AAAT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT
15937972 AAGAT AAA- AAAT AAAT AAAT AAAT AAAT AAA
1 AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
15938003 AATATAAAAT
Statistics
Matches: 126, Mismatches: 26, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
3 31 0.25
4 82 0.65
5 7 0.06
6 6 0.05
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (4 bp):
AAAT
Found at i:15937870 original size:14 final size:14
Alignment explanation
Indices: 15937851--15938010 Score: 99
Period size: 14 Copynumber: 11.9 Consensus size: 14
15937841 AGATAAATAA
*
15937851 AAATAATAATAGAT
1 AAATAATAATAAAT
*
15937865 AAATAATAATATAT
1 AAATAATAATAAAT
15937879 AAATAGATAAT-AAT
1 AAATA-ATAATAAAT
*
15937893 -AAT-A-AATACAT
1 AAATAATAATAAAT
* * * *
15937904 ATATATTAACAGAT
1 AAATAATAATAAAT
15937918 AAATAAT-A-AAAT
1 AAATAATAATAAAT
* *
15937930 ATATATTAATAAAT
1 AAATAATAATAAAT
*
15937944 -AGTAATAATAAAT
1 AAATAATAATAAAT
*
15937957 AAATAATAAATACAT
1 AAATAAT-AATAAAT
*
15937972 AAGATAAAAAATAAAT
1 AA-AT-AATAATAAAT
15937988 AAAT-A-AATAAAT
1 AAATAATAATAAAT
15938000 AAA-AAT-ATAAA
1 AAATAATAATAAA
15938011 ATACAAAAAA
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
10 3 0.03
11 3 0.03
12 26 0.23
13 16 0.14
14 39 0.34
15 15 0.13
16 10 0.09
17 2 0.02
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (14 bp):
AAATAATAATAAAT
Found at i:15937872 original size:53 final size:53
Alignment explanation
Indices: 15937826--15937965 Score: 137
Period size: 53 Copynumber: 2.7 Consensus size: 53
15937816 AATAGATAAT
*
15937826 TAAA-AGAAAATAATTAGATAAATA-A-AAATAATAATAGATAAATAATAATATA
1 TAAATAGAAAATAA-TA-ATAAATACATAAATAATAACAGATAAATAATAATATA
* * * *
15937878 TAAATAGATAATAATAATAAATACATATATATTAACAGATAAATAATAAAATA
1 TAAATAGAAAATAATAATAAATACATAAATAATAACAGATAAATAATAATATA
* * *
15937931 TATATTA-ATAAATAGTAAT-AATAAATAAATAATAA
1 TA-AATAGA-AAATAATAATAAATACATAAATAATAA
15937966 ATACATAAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
51 7 0.10
52 7 0.10
53 47 0.65
54 11 0.15
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (53 bp):
TAAATAGAAAATAATAATAAATACATAAATAATAACAGATAAATAATAATATA
Found at i:15937873 original size:35 final size:34
Alignment explanation
Indices: 15937834--15937998 Score: 118
Period size: 35 Copynumber: 4.5 Consensus size: 34
15937824 ATTAAAAGAA
15937834 AATAATTAGATAAATAAAAATAATAATAGATAAAT
1 AATAA-TAGATAAATAAAAATAATAATAGATAAAT
* * *
15937869 AATAATATATAAATAGATAATAATAATAAATACATAT
1 AATAATAGATAAATA-AAAATAATAATAGATA-A-AT
* *
15937906 ATATTAACAGATAAATAATAAAATATATATTA-ATAAAT
1 A-A-TAATAGATAAAT-A-AAAATA-ATAATAGATAAAT
* *
15937944 AGTAATA-ATAAATAAATAATAAATACATAAGATAAAA
1 AATAATAGATAAATAAA-AAT-AATA-AT-AGATAAAT
*
15937981 AATAAATAAATAAATAAA
1 AAT-AATAGATAAATAAA
15937999 TAAAAATATA
Statistics
Matches: 103, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
33 2 0.02
34 16 0.16
35 27 0.26
36 6 0.06
37 10 0.10
38 8 0.08
39 20 0.19
40 9 0.09
41 5 0.05
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (34 bp):
AATAATAGATAAATAAAAATAATAATAGATAAAT
Found at i:15937889 original size:32 final size:31
Alignment explanation
Indices: 15937853--15937989 Score: 121
Period size: 31 Copynumber: 4.5 Consensus size: 31
15937843 ATAAATAAAA
15937853 ATAATAATAGATAAATAATAATATATAAATAG
1 ATAATAATA-ATAAATAATAATATATAAATAG
* *
15937885 ATAATAATAATAAATACAT-ATATATTAACAG
1 ATAATAATAATAAATA-ATAATATATAAATAG
*
15937916 AT-A-AATAATAAAATATATATTA-ATAAATAG
1 ATAATAATAAT-AAATA-ATAATATATAAATAG
* *
15937946 -TAATAATAAATAAATAATAA-ATACATA-AG
1 ATAATAAT-AATAAATAATAATATATAAATAG
15937975 ATAA-AA-AATAAATAA
1 ATAATAATAATAAATAA
15937990 ATAAATAAAT
Statistics
Matches: 88, Mismatches: 9, Indels: 21
0.75 0.08 0.18
Matches are distributed among these distances:
27 9 0.10
29 12 0.14
30 24 0.27
31 29 0.33
32 14 0.16
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (31 bp):
ATAATAATAATAAATAATAATATATAAATAG
Found at i:15938019 original size:8 final size:7
Alignment explanation
Indices: 15937950--15938023 Score: 53
Period size: 8 Copynumber: 10.0 Consensus size: 7
15937940 AAATAGTAAT
15937950 AATAAATA
1 AATAAA-A
*
15937958 AATAATA
1 AATAAAA
15937965 AATACATAA
1 AATA-A-AA
*
15937974 GATAAAA
1 AATAAAA
15937981 AATAAATA
1 AATAAA-A
15937989 AATAAATA
1 AATAAA-A
15937997 AAT-AAA
1 AATAAAA
*
15938003 AATATAA
1 AATAAAA
15938010 AATACAAA
1 AATA-AAA
15938018 AA-AAAA
1 AATAAAA
15938024 TGGGCCTACC
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
6 7 0.13
7 21 0.38
8 23 0.42
9 4 0.07
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (7 bp):
AATAAAA
Found at i:15938362 original size:44 final size:43
Alignment explanation
Indices: 15938205--15938453 Score: 296
Period size: 40 Copynumber: 5.9 Consensus size: 43
15938195 TTGATCAAAA
* * *
15938205 CTCCCCTAAGCAGAGGCTCAACGACTTT-AAAAATAAAT--GG
1 CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAG
* * *
15938245 CTCCTCTAATCAGAGGCTCAATGACTTTG-AAAATAAAT--GG
1 CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAG
* *
15938285 CTCCTCTAATCAAAGGCTCAACGACTTTG-AAAATAAATAAAG
1 CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAG
15938327 CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGCTCAACGACTTTG-AAAAATAAATAAAG
* * * *
15938371 CTCCTCTAAACAAAGGCTTAACAACTTTAAAAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGCTCAACGACTTT--GAAAAATAAATAAAG
* *
15938416 CTCCTCTAAACAGAGGCTCAATGACTTTTAAAAATAAA
1 CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
15938454 ATGCTCATCT
Statistics
Matches: 185, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
40 72 0.39
42 28 0.15
43 9 0.05
44 38 0.21
45 38 0.21
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.23
Consensus pattern (43 bp):
CTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAG
Found at i:15938425 original size:89 final size:83
Alignment explanation
Indices: 15938218--15938495 Score: 321
Period size: 86 Copynumber: 3.3 Consensus size: 83
15938208 CCCTAAGCAG
* * *
15938218 AGGCTCAACGACTTTAAAAATAAAT--GGCTCCTCTAATCAGAGGCTCAATGACTTTG-AAAATA
1 AGGCTCAACAACTTTAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTGAAAAATA
* *
15938280 AATGGCTCCTCTAATCAA
66 AATAGCTCCTCTAAACAA
* * *
15938298 AGGCTCAACGACTTTGAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAAT
1 AGGCTCAACAACTTTAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTG-AAAAAT
15938363 AAATAAAGCTCCTCTAAACAA
65 AAAT--AGCTCCTCTAAACAA
* *
15938384 AGGCTTAACAACTTTAAAAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTTAAAA
1 AGGCTCAACAACTTT---AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTGAAAA
* ***
15938449 ATAAA-ATGCTCATCTATTTAA
63 ATAAATA-GCTCCTCTAAACAA
*
15938470 AGGCTCAACAACTTTTGAAAATAAAT
1 AGGCTCAACAAC-TTTAAAAATAAAT
15938496 TGGCTCAACG
Statistics
Matches: 170, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
80 24 0.14
82 28 0.16
84 18 0.11
85 1 0.01
86 47 0.28
87 3 0.02
88 9 0.05
89 40 0.24
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (83 bp):
AGGCTCAACAACTTTAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTGAAAAATA
AATAGCTCCTCTAAACAA
Found at i:15938514 original size:67 final size:67
Alignment explanation
Indices: 15938430--15938564 Score: 177
Period size: 67 Copynumber: 2.0 Consensus size: 67
15938420 TCTAAACAGA
* **
15938430 GGCTCAATGACTTTTAAAAATAAAATGCTCATCT-ATTTAAAGGC-TCAACAACTTT-TGAAAAT
1 GGCTCAACGACTTTTAAAAATAAAATGCTCATCTGA-ACAAAGGCATC-ACAACTTTGT-AAAAT
15938492 AAATT
63 AAATT
* *
15938497 GGCTCAACGACTTTTAAAAATAAATTGCTCCTCTGAACAAAGGCATCACAACTTTGTAAAATAAA
1 GGCTCAACGACTTTTAAAAATAAAATGCTCATCTGAACAAAGGCATCACAACTTTGTAAAATAAA
15938562 TT
66 TT
15938564 G
1 G
15938565 CTCCTCTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
67 56 0.93
68 4 0.07
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (67 bp):
GGCTCAACGACTTTTAAAAATAAAATGCTCATCTGAACAAAGGCATCACAACTTTGTAAAATAAA
TT
Found at i:15938526 original size:25 final size:26
Alignment explanation
Indices: 15938471--15938523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938461 TCTATTTAAA
*
15938471 GGCTCAACAACTTTTGAAAATAAATT
1 GGCTCAACAACTTTTAAAAATAAATT
*
15938497 GGCTCAACGACTTTTAAAAATAAATT
1 GGCTCAACAACTTTTAAAAATAAATT
15938523 G
1 G
15938524 CTCCTCTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (26 bp):
GGCTCAACAACTTTTAAAAATAAATT
Found at i:15938563 original size:41 final size:41
Alignment explanation
Indices: 15938513--15938606 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
15938503 ACGACTTTTA
* *
15938513 AAAATAAATTGCTCCTCTGAACAAAGGCATCACAACTT-TG
1 AAAATAAATTGCTCCTCTAAACAAAGGCATCACAACTTCAG
*
15938553 TAAAATAAATTGCTCCTCTAAACAGAGGCATCACAACTTCAG
1 -AAAATAAATTGCTCCTCTAAACAAAGGCATCACAACTTCAG
15938595 AAAATAAATTGC
1 AAAATAAATTGC
15938607 ACCTTAGCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
41 48 0.98
42 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (41 bp):
AAAATAAATTGCTCCTCTAAACAAAGGCATCACAACTTCAG
Found at i:15939615 original size:20 final size:20
Alignment explanation
Indices: 15939592--15939641 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
15939582 ACCTTGAGTC
15939592 TTTTTTTTTCATTCACTTTT
1 TTTTTTTTTCATTCACTTTT
* ** *
15939612 TTTTTTCTTGTTTCTCTTTT
1 TTTTTTTTTCATTCACTTTT
15939632 TTTTCTTTTT
1 TTTT-TTTTT
15939642 TTTTCCATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTTTTTCATTCACTTTT
Found at i:15939638 original size:9 final size:9
Alignment explanation
Indices: 15939610--15939644 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15939600 TCATTCACTT
15939610 TTTTTTTTC
1 TTTTTTTTC
* *
15939619 TTGTTTCTC
1 TTTTTTTTC
15939628 TTTTTTTTC
1 TTTTTTTTC
15939637 TTTTTTTT
1 TTTTTTTT
15939645 TCCATTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:15939668 original size:28 final size:25
Alignment explanation
Indices: 15939608--15939685 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 25
15939598 TTTCATTCAC
* *
15939608 TTTTTTTTTTCTT-GTTTCTCTTTTT
1 TTTTTTTTTTTTTCATTT-TCTTTTT
*
15939633 TTTCTTTTTTTTTCCATTTTCTTTTT
1 TTT-TTTTTTTTTTCATTTTCTTTTT
*
15939659 TCTATTTTTTTCATTTCATTTT-TTTTT
1 T-T-TTTTTTT-TTTTCATTTTCTTTTT
15939686 CAAGCATAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
25 3 0.07
26 16 0.37
27 15 0.35
28 9 0.21
ACGTcount: A:0.05, C:0.13, G:0.01, T:0.81
Consensus pattern (25 bp):
TTTTTTTTTTTTTCATTTTCTTTTT
Found at i:15939680 original size:23 final size:24
Alignment explanation
Indices: 15939630--15939682 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
15939620 TGTTTCTCTT
*
15939630 TTTTTTCTTTTTTTTTCCATTTTC
1 TTTTTTCTATTTTTTTCCATTTTC
15939654 TTTTTTCTATTTTTTT-CA-TTTC
1 TTTTTTCTATTTTTTTCCATTTTC
15939676 ATTTTTT
1 -TTTTTT
15939683 TTTCAAGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 8 0.30
24 15 0.56
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTTCTATTTTTTTCCATTTTC
Found at i:15946399 original size:12 final size:11
Alignment explanation
Indices: 15946370--15946424 Score: 69
Period size: 10 Copynumber: 5.0 Consensus size: 11
15946360 TTATTTAAAG
*
15946370 AAATAATAA-A
1 AAATAAAAATA
15946380 AAATAAAAATA
1 AAATAAAAATA
15946391 AAGATAAAAATA
1 AA-ATAAAAATA
15946403 AAAT-AAAATA
1 AAATAAAAATA
15946413 AAATAAGAAATA
1 AAATAA-AAATA
15946425 CTAAATAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
10 18 0.45
11 6 0.15
12 16 0.40
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:15946405 original size:5 final size:5
Alignment explanation
Indices: 15946370--15946418 Score: 55
Period size: 5 Copynumber: 9.2 Consensus size: 5
15946360 TTATTTAAAG
15946370 AAATA ATAA-A AAATAA AAATA AAGATAA AAATA AAATA AAATA AAATA
1 AAATA A-AATA AAAT-A AAATA AA-AT-A AAATA AAATA AAATA AAATA
15946418 A
1 A
15946419 GAAATACTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
4 2 0.05
5 23 0.59
6 11 0.28
7 3 0.08
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:15946458 original size:3 final size:3
Alignment explanation
Indices: 15946450--15946490 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
15946440 CTAATCAATA
*
15946450 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15946491 ATATATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:15946467 original size:12 final size:12
Alignment explanation
Indices: 15946371--15946490 Score: 74
Period size: 12 Copynumber: 10.2 Consensus size: 12
15946361 TATTTAAAGA
15946371 AATAATAA-AA-
1 AATAATAATAAT
*
15946381 AATAAAAATAA-
1 AATAATAATAAT
*
15946392 AGATAAAAATAA-
1 A-ATAATAATAAT
15946404 AATAA-AATAA-
1 AATAATAATAAT
* *
15946414 AATAAGAAATACT
1 AATAA-TAATAAT
**
15946427 AAATAATTCTAAT
1 -AATAATAATAAT
*
15946440 -CTAATCAATAAAT
1 AATAAT-AAT-AAT
15946453 AATAATAATAAT
1 AATAATAATAAT
*
15946465 AATAACAATAAT
1 AATAATAATAAT
15946477 AATAATAATAAT
1 AATAATAATAAT
15946489 AA
1 AA
15946491 ATATATATAT
Statistics
Matches: 89, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
10 17 0.19
11 11 0.12
12 43 0.48
13 9 0.10
14 9 0.10
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:15946523 original size:7 final size:6
Alignment explanation
Indices: 15946378--15946529 Score: 62
Period size: 6 Copynumber: 24.8 Consensus size: 6
15946368 AGAAATAATA
*
15946378 AAAAAT AAAAAT AAAGAT AAAAAT -AAAAT -AAAAT -AAAAT AAGAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT
* *** ** * * * *
15946424 ACTAAAT AATTCT -AATCT AATCAAT AAATAAT AATAAT AATAAT AACAAT
1 A-AAAAT AAAAAT AAAAAT AA-AAAT AAA-AAT AAAAAT AAAAAT AAAAAT
* * * *
15946474 AATAAT AATAAT AATAAAT ATATATAT ATAAAT AAAAAT AAAAAT GAAAAA-
1 AAAAAT AAAAAT AA-AAAT A-A-AAAT AAAAAT AAAAAT AAAAAT -AAAAAT
15946525 AAAAA
1 AAAAA
15946530 CTTGGGAACG
Statistics
Matches: 117, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
5 24 0.21
6 60 0.51
7 27 0.23
8 6 0.05
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (6 bp):
AAAAAT
Found at i:15946959 original size:31 final size:31
Alignment explanation
Indices: 15946922--15946980 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
15946912 TAGTTGATCG
15946922 AAAAATTCAAACTTAGCCAAAAAATTCACCA
1 AAAAATTCAAACTTAGCCAAAAAATTCACCA
* * *
15946953 AAAAATTCAAACTTCGCTAGAAAATTCA
1 AAAAATTCAAACTTAGCCAAAAAATTCA
15946981 ACTGAAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.53, C:0.20, G:0.05, T:0.22
Consensus pattern (31 bp):
AAAAATTCAAACTTAGCCAAAAAATTCACCA
Found at i:15947356 original size:42 final size:40
Alignment explanation
Indices: 15947310--15947393 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 40
15947300 AATCAAATAA
* *
15947310 AAAAATGTTAATAGATAATTAAAAGAAAATAATTAGACAAAT
1 AAAAATATTAATAGATAAATAAAA-AAAATAA-TAGACAAAT
* *
15947352 AAAAATATTAATAGATAAATAAAAATAATAATAGATAAAT
1 AAAAATATTAATAGATAAATAAAAAAAATAATAGACAAAT
15947392 AA
1 AA
15947394 TAAAATATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 10 0.26
41 6 0.16
42 22 0.58
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.26
Consensus pattern (40 bp):
AAAAATATTAATAGATAAATAAAAAAAATAATAGACAAAT
Found at i:15947371 original size:20 final size:20
Alignment explanation
Indices: 15947318--15947479 Score: 121
Period size: 20 Copynumber: 7.8 Consensus size: 20
15947308 AAAAAAATGT
* *
15947318 TAATAGATAATTAAAAGAAAA
1 TAATAGATAAATAAAA-ATAA
* *
15947339 TAATTAGACAAATAAAAATAT
1 TAA-TAGATAAATAAAAATAA
15947360 TAATAGATAAATAAAAATAA
1 TAATAGATAAATAAAAATAA
*
15947380 TAATAGATAAATAATAA-AA
1 TAATAGATAAATAAAAATAA
* * *
15947399 TATATATATTAATAAATAGTAA
1 TA-ATAGATAAATAAA-AATAA
*
15947421 TAATAAATAAATAAATAATAAA
1 TAATAGATAAATAAA-AAT-AA
*
15947443 TACATAAGATATAA-AAAAACAA
1 TA-AT-AGATA-AATAAAAATAA
* *
15947465 AAATAAATAAATAAA
1 TAATAGATAAATAAA
15947480 TAAATATATG
Statistics
Matches: 114, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
19 6 0.05
20 48 0.42
21 25 0.22
22 22 0.19
23 4 0.04
24 7 0.06
25 2 0.02
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
TAATAGATAAATAAAAATAA
Found at i:15947393 original size:4 final size:4
Alignment explanation
Indices: 15947348--15947512 Score: 85
Period size: 4 Copynumber: 40.8 Consensus size: 4
15947338 ATAATTAGAC
* * * *
15947348 AAAT AAA- AATAT TAAT AGAT AAAT AAAA ATAAT -AAT AGAT AAAT -AAT
1 AAAT AAAT AA-AT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT
* * *
15947395 AAAAT ATAT ATAT TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT -AAT AAAT
1 -AAAT AAAT AAAT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
15947444 ACAT AAGAT ATAA- AAA- AACAA AAAT AAAT AAAT AAAT AAAT ATAT GAAAT
1 AAAT AA-AT A-AAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT
*
15947494 ACAA- AAAT AAAA AAAT AAA
1 A-AAT AAAT AAAT AAAT AAA
15947513 ATGGGTCTAC
Statistics
Matches: 125, Mismatches: 19, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
3 20 0.16
4 84 0.67
5 17 0.14
6 4 0.03
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:15947444 original size:44 final size:43
Alignment explanation
Indices: 15947288--15947511 Score: 137
Period size: 44 Copynumber: 5.2 Consensus size: 43
15947278 GAATAAAAAG
* * *
15947288 AAAATAA-AATCAAATCAAATAA-AAAAATGTTAATAGAT-AATT
1 AAAATAATAAT-AAAT-AAATAATAAATATATTAATAGATAAATA
* * *
15947330 AAAAGAA-AATAATTAGACA-AATAAAAATATTAATAGATAAATA
1 AAAATAATAATAAATA-A-ATAATAAATATATTAATAGATAAATA
* *
15947373 AAAATAATAATAGATAAATAATAAAATATATATATTA-ATAAATA
1 AAAATAATAATAAATAAATAAT-AAATATAT-TAATAGATAAATA
** *
15947417 GTAATAATAAATAAATAAATAATAAATACA-T-A-AGATATAA-A
1 AAAATAAT-AATAAATAAATAATAAATATATTAATAGATA-AATA
* * * * *
15947458 AAAACAAAAATAAATAAATAAATAAATATATGAAATACAAAAATA
1 AAAATAATAATAAATAAAT-AATAAATATAT-TAATAGATAAATA
15947503 AAAA-AATAA
1 AAAATAATAA
15947512 AATGGGTCTA
Statistics
Matches: 142, Mismatches: 23, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
40 13 0.09
41 23 0.16
42 29 0.20
43 13 0.09
44 39 0.27
45 25 0.18
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (43 bp):
AAAATAATAATAAATAAATAATAAATATATTAATAGATAAATA
Found at i:15947706 original size:22 final size:21
Alignment explanation
Indices: 15947672--15947721 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
15947662 TTCAAATATT
** *
15947672 ATATTATAAAAATTAATATTA
1 ATATTATTTAAATTAATAATA
*
15947693 ATAATTATTTAAATTATTAATA
1 AT-ATTATTTAAATTAATAATA
15947715 ATATTAT
1 ATATTAT
15947722 AACAATGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATTATTTAAATTAATAATA
Found at i:15947839 original size:9 final size:9
Alignment explanation
Indices: 15947821--15947853 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
15947811 TATTTCAAAT
15947821 TAAT-ACTA
1 TAATAACTA
15947829 TAATAACTA
1 TAATAACTA
15947838 TAATAACTA
1 TAATAACTA
15947847 TTAATAA
1 -TAATAA
15947854 ATAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 4 0.17
9 13 0.57
10 6 0.26
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
TAATAACTA
Found at i:15947970 original size:25 final size:22
Alignment explanation
Indices: 15947959--15948027 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 22
15947949 TATATATATA
15947959 ATTATTTATAATAATTATAAAT
1 ATTATTTATAATAATTATAAAT
**
15947981 ATTA-TT-TAATCGTTATAAAT
1 ATTATTTATAATAATTATAAAT
* * *
15948001 ATTTATTTATTATATTTATTAAT
1 A-TTATTTATAATAATTATAAAT
15948024 -TTAT
1 ATTAT
15948028 ATTAGTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
20 13 0.34
21 9 0.24
22 6 0.16
23 10 0.26
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (22 bp):
ATTATTTATAATAATTATAAAT
Found at i:15948107 original size:30 final size:29
Alignment explanation
Indices: 15947995--15948085 Score: 87
Period size: 30 Copynumber: 3.1 Consensus size: 29
15947985 TTTAATCGTT
* * *
15947995 ATAAATATTTATTTATTATATTTATTAATTT
1 ATAAATATTTA-ATAATATATTTA-TAATTA
* *
15948026 AT-ATTAGTT-ATAATATAGTTTATAATTA
1 ATAAATATTTAATAATATA-TTTATAATTA
15948054 ATAAATATTTAATAATAATATTTATAATTA
1 ATAAATATTTAATAAT-ATATTTATAATTA
15948084 AT
1 AT
15948086 TATTGTTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
28 13 0.27
29 9 0.18
30 22 0.45
31 5 0.10
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
ATAAATATTTAATAATATATTTATAATTA
Found at i:15948123 original size:12 final size:12
Alignment explanation
Indices: 15948058--15948151 Score: 57
Period size: 14 Copynumber: 7.3 Consensus size: 12
15948048 TAATTAATAA
*
15948058 ATATTTAATAATA
1 ATATTT-ATAATT
15948071 ATATTTATAATT
1 ATATTTATAATT
* *
15948083 AATTATTGTTTAAAT
1 -A-TATT-TATAATT
15948098 ACTATATT-TAATT
1 A-TAT-TTATAATT
15948111 ATATTTATAATT
1 ATATTTATAATT
*
15948123 ATATTATTATAAAT
1 ATA-T-TTATAATT
*
15948137 ATA-TTATAATG
1 ATATTTATAATT
15948148 ATAT
1 ATAT
15948152 AATTAATATC
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
11 11 0.17
12 16 0.25
13 13 0.20
14 19 0.29
15 6 0.09
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (12 bp):
ATATTTATAATT
Done.