Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 78 of 117
Found at i:15948143 original size:25 final size:26
Alignment explanation
Indices: 15948102--15948156 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
15948092 TTAAATACTA
* *
15948102 TATT-TAATTATATTTATAATTATAT
1 TATTATAAATATATTTATAATGATAT
15948127 TATTATAAATATA-TTATAATGATAT
1 TATTATAAATATATTTATAATGATAT
*
15948152 AATTA
1 TATTA
15948157 ATATCAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTATAAATATATTTATAATGATAT
Found at i:15948156 original size:14 final size:13
Alignment explanation
Indices: 15948106--15948321 Score: 51
Period size: 14 Copynumber: 17.2 Consensus size: 13
15948096 ATACTATATT
*
15948106 TAAT-TATATTTA
1 TAATATATAATTA
*
15948118 TAATTATATTATTA
1 TAA-TATATAATTA
15948132 TAA-ATAT-ATTA
1 TAATATATAATTA
15948143 TAATGATATAA-T-
1 TAAT-ATATAATTA
*
15948155 TAATAT-CAATTA
1 TAATATATAATTA
15948167 -AATA-AGT-ATT-
1 TAATATA-TAATTA
15948177 TAAT-TATAATTA
1 TAATATATAATTA
* *
15948189 -AATTTAT-ATGAA
1 TAATATATAAT-TA
15948201 TAAT-TAATAATTA
1 TAATAT-ATAATTA
*
15948214 TAATAATATATTTA
1 TAAT-ATATAATTA
* *
15948228 TTATAT-TCATTA
1 TAATATATAATTA
*
15948240 TTATA-ATAAATTA
1 TAATATAT-AATTA
*
15948253 TTAATATTTAAATTA
1 -TAATATAT-AATTA
15948268 TAAATAATACTAA-T-
1 T-AAT-ATA-TAATTA
15948282 TAAT-TATAA-TA
1 TAATATATAATTA
* *
15948293 -ATTAAATAATTA
1 TAATATATAATTA
*
15948305 TTAATATATAATAA
1 -TAATATATAATTA
15948319 TAA
1 TAA
15948322 ATAAATATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 63
0.65 0.08 0.27
Matches are distributed among these distances:
10 9 0.06
11 35 0.23
12 28 0.18
13 28 0.18
14 36 0.24
15 12 0.08
16 4 0.03
17 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (13 bp):
TAATATATAATTA
Found at i:15948240 original size:26 final size:26
Alignment explanation
Indices: 15948210--15948260 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948200 ATAATTAATA
*
15948210 ATTATAATAATATATTTATT-ATATTC
1 ATTATAATAATA-AATTATTAATATTC
*
15948236 ATTATTATAATAAATTATTAATATT
1 ATTATAATAATAAATTATTAATATT
15948261 TAAATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTATAATAATAAATTATTAATATTC
Found at i:15948300 original size:24 final size:24
Alignment explanation
Indices: 15948273--15948325 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
15948263 AATTATAAAT
*
15948273 AATACTAATTAAT-TATAATAATTA
1 AATAATAATTAATATATAATAA-TA
*
15948297 AATAATTATTAATATATAATAATA
1 AATAATAATTAATATATAATAATA
15948321 AATAA
1 AATAA
15948326 ATATTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
AATAATAATTAATATATAATAATA
Found at i:15948315 original size:45 final size:42
Alignment explanation
Indices: 15948199--15948320 Score: 104
Period size: 44 Copynumber: 2.7 Consensus size: 42
15948189 AATTTATATG
* * * *
15948199 AATAATTAATAATTATAATAATATATTTATTATATTCATTATTAT
1 AATAATTAATAATTAT--TAATATA-TAATAATACTAATTATTAT
*
15948244 AATAAATTATTAA-TATTTAA-ATTATAAATAATACTAATTAATTAT
1 AAT-AATTAATAATTA-TTAATA-TAT-AATAATACTAATT-ATTAT
15948289 AATAATTAAATAATTATTAATATATAATAATA
1 AATAATT-AATAATTATTAATATATAATAATA
15948321 AATAAATATT
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
43 2 0.03
44 25 0.40
45 24 0.38
46 12 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (42 bp):
AATAATTAATAATTATTAATATATAATAATACTAATTATTAT
Found at i:15948324 original size:14 final size:14
Alignment explanation
Indices: 15948267--15948328 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 14
15948257 TATTTAAATT
*
15948267 ATAAATAATACT-A
1 ATAAATAATAATAA
* *
15948280 ATTAATTATAATAA
1 ATAAATAATAATAA
* * *
15948294 TTAAATAATTATTA
1 ATAAATAATAATAA
*
15948308 ATATATAATAATAA
1 ATAAATAATAATAA
15948322 ATAAATA
1 ATAAATA
15948329 TTTATTTTAT
Statistics
Matches: 35, Mismatches: 13, Indels: 1
0.71 0.27 0.02
Matches are distributed among these distances:
13 9 0.26
14 26 0.74
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAAATAATAATAA
Found at i:15948339 original size:25 final size:25
Alignment explanation
Indices: 15948205--15948341 Score: 75
Period size: 29 Copynumber: 5.2 Consensus size: 25
15948195 TATGAATAAT
*
15948205 TAATAATTATAATAATATATTTATTATA
1 TAATAATTA-AATAA-ATATTAATT-TA
* *
15948233 TTCATTATTATAATAAATTATTAATATT-
1 -TAATAATTA-AATAAA-TATTAAT-TTA
*
15948261 TAA-ATTATAAATAATACTAATTAA-TTA
1 TAATAAT-TAAATAA-A-T-ATTAATTTA
* *
15948288 TAATAATTAAATAATTATTAATATA
1 TAATAATTAAATAAATATTAATTTA
*
15948313 TAATAA-TAAATAAATATTTATTTTA
1 TAATAATTAAATAAATA-TTAATTTA
15948338 TAAT
1 TAAT
15948342 TATTCATATA
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
24 14 0.16
25 19 0.22
26 8 0.09
27 16 0.19
28 8 0.09
29 20 0.23
30 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATAATTAAATAAATATTAATTTA
Found at i:15948389 original size:17 final size:18
Alignment explanation
Indices: 15948358--15948400 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
15948348 TATAAATTAA
*
15948358 TTATATATTAATATTTAAT
1 TTAT-TATTAATATTAAAT
*
15948377 TT-TTATTATTATTAAAT
1 TTATTATTAATATTAAAT
15948394 TTATTAT
1 TTATTAT
15948401 AGTTATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 14 0.67
18 5 0.24
19 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTATTAATATTAAAT
Found at i:15948483 original size:16 final size:15
Alignment explanation
Indices: 15948464--15948502 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
15948454 TATATACCAA
15948464 TAATTATATATAAATT
1 TAATTATATAT-AATT
15948480 TAATTATATATAATT
1 TAATTATATATAATT
*
15948495 AAATTATA
1 TAATTATA
15948503 AATATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATTATATATAATT
Found at i:15948492 original size:26 final size:26
Alignment explanation
Indices: 15948463--15948523 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
15948453 TTATATACCA
*
15948463 ATAATTATA-TATAAAT-TTAATTATAT
1 ATAATTAAATTATAAATATT-ATTA-AT
15948489 ATAATTAAATTATAAATATTATTAAT
1 ATAATTAAATTATAAATATTATTAAT
*
15948515 ATTATTAAA
1 ATAATTAAA
15948524 CTAATTTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 18 0.58
27 11 0.35
28 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
ATAATTAAATTATAAATATTATTAAT
Found at i:15948727 original size:21 final size:22
Alignment explanation
Indices: 15948703--15948753 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
15948693 ATAAAATCAA
**
15948703 TAATAATATGTATTATTAT-AT
1 TAATAATATAAATTATTATAAT
15948724 TAAT-ATAATAAATTATTATAAT
1 TAATAAT-ATAAATTATTATAAT
15948746 T-ATAATAT
1 TAATAATAT
15948754 TATAATTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TAATAATATAAATTATTATAAT
Found at i:15948751 original size:24 final size:26
Alignment explanation
Indices: 15948702--15948759 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 26
15948692 TATAAAATCA
*
15948702 ATAATAATATGTATTATTATATTAAT
1 ATAATAATATGTATTATAATATTAAT
15948728 ATAATAA-AT-TATTATAAT-TATAAT
1 ATAATAATATGTATTATAATAT-TAAT
*
15948752 ATTATAAT
1 ATAATAAT
15948760 TTAGTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 2 0.07
26 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
ATAATAATATGTATTATAATATTAAT
Found at i:15949424 original size:181 final size:180
Alignment explanation
Indices: 15949011--15949738 Score: 708
Period size: 181 Copynumber: 4.1 Consensus size: 180
15949001 TAATATTTTA
* * * * * * * *
15949011 GTATGAACTGAAATAATTCTTTTATTACAAAAGAAAATGTCATAATAATTTGAAATAGATAATTA
1 GTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTA
* * * * * *
15949076 TTTAAATGGTCATCACTATTTGAACTTGTTCTGCAAACATATTTATTTTTTAAATCTTTTACTTA
66 TTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTA
* * *
15949141 TT-A--A--A-ATATTAAAAAATTAATATTATTTTAATCTG-AATAAACTT
131 TTAATTATTAGATATTAATAAATTAGTATTATTTTAATC-GAAATAAGCTT
* ** * *
15949185 GTACGAACAGAAACAATTATTTTATGACAAAACAAAAAATCATAGCAAGTTGAAATAAATAATTG
1 GTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATT-
* * * *
15949250 CTT-AAATAGTCATAACGATTTGAACTTGTTCAATAAATAAATTTATTTTTTAAATCTTTTACTT
65 ATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTT
* *
15949314 ATTAATTATCTTA-ATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTT
130 ATTAATTA--TTAGATATTAATAAATTAGTATTATTTTAATCGAAATAAGCTT
* * * *** *
15949366 GTATGAATAGAAA-ATTTTATTTTATGACAAAACAAAAGGTTATAGTGATTTCAAATAAATAATT
1 GTATGAACAGAAACA-ATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATT
* * * * *
15949430 ATTCAAATAGTTATAATTATTTAAAATTGTTCAGTAAACAGAA-TTATTTTTTAAATTTTTTTA-
65 ATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA-AATTTATTTTTTAAA-TCTTTTAC
* * * * *
15949493 TCATTAATTTTTAGATTATTAGTAAATTAGTATTAATTTATTTC-AAATAAGCTT
128 TTATTAATTATTAGA-TATTAATAAATTAGTATTATTTTA-ATCGAAATAAGCTT
* * * * *
15949547 ATATGAACTGAAACAATTCTTTTATGACAAAACAGAAGGTCATAACAATTTGAAATAGATAATTA
1 GTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTA
* * * * * * *
15949612 TTCAAATAGTCATGATTATTTGATCTAGTTCAGTAAACATATTTATTTTTAAAATTTTTTACTTA
66 TTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTA
* * * * * *
15949677 TTAATTGTCAATATATTAGTAAATTAGTATTAGTTTAATCCAAATAAGCTT
131 TTAATTAT-TAGATATTAATAAATTAGTATTATTTTAATCGAAATAAGCTT
15949728 GTATGAACAGA
1 GTATGAACAGA
15949739 TTATTTTATT
Statistics
Matches: 455, Mismatches: 78, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
174 108 0.24
175 3 0.01
177 1 0.00
179 3 0.01
180 15 0.03
181 311 0.68
182 14 0.03
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (180 bp):
GTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTA
TTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTA
TTAATTATTAGATATTAATAAATTAGTATTATTTTAATCGAAATAAGCTT
Found at i:15950510 original size:28 final size:34
Alignment explanation
Indices: 15950477--15950545 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
15950467 GTTATAATAA
15950477 TTAAATTTA-ATT-ATAATTT-T-A-AA-TAAAT
1 TTAAATTTATATTAATAATTTATAACAATTAAAT
15950505 TTAAATTTATATTAATAATTTATAACAATTAAAT
1 TTAAATTTATATTAATAATTTATAACAATTAAAT
15950539 TTAAATT
1 TTAAATT
15950546 ATGCCTTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
28 9 0.26
29 3 0.09
30 7 0.20
31 1 0.03
32 1 0.03
33 2 0.06
34 12 0.34
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
TTAAATTTATATTAATAATTTATAACAATTAAAT
Found at i:15950884 original size:24 final size:23
Alignment explanation
Indices: 15950856--15950935 Score: 63
Period size: 24 Copynumber: 3.3 Consensus size: 23
15950846 ATCTCTATTT
*
15950856 ATTTATTAATATTAAATTTAATTA
1 ATTTATTAATA-TAAATTTAAATA
* *
15950880 ATTTAAGTAATATAATAATTAAATA
1 ATTT-ATTAATATAA-ATTTAAATA
* *
15950905 A-TTACTTAAAATAAATTTTAACTA
1 ATTTA-TTAATATAAA-TTTAAATA
15950929 ATTTATT
1 ATTTATT
15950936 CTTTTAATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
23 2 0.05
24 25 0.57
25 17 0.39
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (23 bp):
ATTTATTAATATAAATTTAAATA
Found at i:15951655 original size:32 final size:32
Alignment explanation
Indices: 15951558--15951660 Score: 79
Period size: 32 Copynumber: 3.2 Consensus size: 32
15951548 TATACTAAAT
* *
15951558 TATTAAATA-TT-ATTAAGCTAATATCTAATACT
1 TATTAAATATTTAATTAA-TTAATATCTAATA-A
* * *
15951590 TAATTAATTAATTTAATT-ATGAATAAT-TCATAA
1 T-ATTAAAT-ATTTAATTAATTAAT-ATCTAATAA
15951623 TATTAAATATTTAATTAATTAATATCTAATAA
1 TATTAAATATTTAATTAATTAATATCTAATAA
*
15951655 TTTTAA
1 TATTAA
15951661 TTAGCTTCGA
Statistics
Matches: 55, Mismatches: 9, Indels: 14
0.71 0.12 0.18
Matches are distributed among these distances:
31 10 0.18
32 22 0.40
33 7 0.13
34 8 0.15
35 5 0.09
36 3 0.05
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (32 bp):
TATTAAATATTTAATTAATTAATATCTAATAA
Found at i:15951762 original size:22 final size:19
Alignment explanation
Indices: 15951734--15951783 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 19
15951724 TTAAGTTAAC
15951734 TTATTTATTAATATAATAAAT
1 TTATTTATTAAT-TAAT-AAT
* *
15951755 ATTATTTAATAATTACTAAT
1 -TTATTTATTAATTAATAAT
15951775 TTATTTATT
1 TTATTTATT
15951784 TCAAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 8 0.32
20 3 0.12
21 3 0.12
22 11 0.44
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATTTATTAATTAATAAT
Found at i:15952662 original size:30 final size:31
Alignment explanation
Indices: 15952606--15952663 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
15952596 AGATAAAATA
* *
15952606 TAATAGTTATATTTTATTAATGTTAAATAAT
1 TAATAGTTATATTTAATTAATATTAAATAAT
15952637 TAATA-TTATATTTAA-TATATATTAAAT
1 TAATAGTTATATTTAATTA-ATATTAAAT
15952664 TAGTTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.08
30 17 0.71
31 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TAATAGTTATATTTAATTAATATTAAATAAT
Found at i:15952745 original size:18 final size:18
Alignment explanation
Indices: 15952724--15952776 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 18
15952714 ACACTAATTT
* * *
15952724 ATTAAATTATTTTGTTTA
1 ATTAAATTATTATATTAA
15952742 ATTAAAATTATTATATTAA
1 ATT-AAATTATTATATTAA
15952761 ATTAAA-TATTA-ATTAA
1 ATTAAATTATTATATTAA
15952777 TTATATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 5 0.16
17 5 0.16
18 6 0.19
19 15 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTAAATTATTATATTAA
Found at i:15953267 original size:180 final size:181
Alignment explanation
Indices: 15952975--15955676 Score: 2033
Period size: 180 Copynumber: 15.0 Consensus size: 181
15952965 ATTCACAACA
* * * *
15952975 ATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTAGT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTA-T
* * * * * *
15953040 TTTTCAAATATCCTGCTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTCGAAT
65 TTTTTAAATCTCTTACTTATTAAT-TTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* ** *
15953104 AAGCTTGTATGAACTAAAACAATTATTTTATGATTAAACAAAAGGTCAAAATG
129 AAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * ** * * *
15953157 ATTTGAAATAGAAAATTATTCTAATAATCTTAACTATTTGAA-GTAATCGGCAAATACATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
*
15953221 TTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTTATTT-GAATA
66 TTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTA-TTTTATTTCGAATA
* ** * * *
15953285 AGCTTATATGATAAAAAAATAATTATTTTATGACAAAAC-AAAGATCATAATG
130 AGCTTGTATGA-ACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * *** ** * *
15953337 ATTTGAGATTA-CTATTTGCTT-AAATAGTTATAACTATTAGAACGACTTTGAAAAACAGCTTTA
1 ATTTGA-AATAGATAATT-ATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTA
* * * * ** * *
15953400 GTTTTTAAATCTGTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTT-TAGA
64 TTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGA-A
* * * * * * *
15953464 TAAG-TTTTAATTAACTCAAACAATTGTTTTATGACAAAATAAAATGTCAAAATA
128 TAAGCTTGT-ATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * * **
15953518 ATTTTAAACAGATAATTGTTTAAATAGTCATATCTATTAGAAATTGTTCAGTAAATAGATTTAAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTT-AT
* * * * * *
15953583 TTTTTAAATCTCTT-GTT-TTAATTTTTC-GATTGTTAACAAATTAGTATTATTTTA-TTCAAAA
65 TTTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTAATAAATTAGTATTATTTTATTTC-GAA
* * ** * *
15953644 TAAGCTTGTATGAACTGAAATAATAATTTTATGACTAAACAAAAGGAT-AGAATG
128 TAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGG-TCATAATG
* * * * * *
15953698 ATTTGAAATAGATAATTATT-ATGACAGTCTTAACTATTTAAACTAGTTTGACTAACAT--ATTT
1 ATTTGAAATAGATAATTATTCA-AATAGTCATAACTATTTGAACTTGTTTG-GTAA-ATAGATTT
* ** * * * *
15953760 ATTTTTTAAA--AC-T-CTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATCCGAA
63 ATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAA
*** * ** * *
15953821 TAAGCTTGTATGAAAGGAAACAATTGTTGTATGAC-AAAGTAAAGATCATTATG
128 TAAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * *
15953874 ATTTGAGATAGATAATTGA-TCAAATAGTCATAACTATTTGAACTGGTTTAGTAAATAGATTTAG
1 ATTTGAAATAGATAATT-ATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTAT
* ** *
15953938 TTTTTAAA--TC-T-CTTATTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATA
65 TTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
** * * * * **
15953999 ATTTTGTATGAA-TAGAAAAAATTATTTTATGACAAAATAAAAGATCATAACA
130 AGCTTGTATGAACTA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * *
15954051 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGCTCGATAAATAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTA-T
* *** * * *
15954116 TTTTTAAATCTTTTACTTATTAATTTTTTGAAT-TTGAATAAATTAGTACTATTTTATTTCAAAA
65 TTTTTAAATCTCTTACTTATTAATTTTCAAAATATT-AATAAATTAGTATTATTTTATTTCGAAT
* * *
15954180 AAGCTTTTATG-ACTAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAATG
129 AAGCTTGTATGAACTA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* ** * *
15954233 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACGTGTTCAGAAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
*** *
15954298 TTTTAAAAT-T-TTACTTATTAATTTTTGGAATATTAATAAATTTA-AATTATTTTA-TTCGAAA
66 TTTT-AAATCTCTTACTTATTAATTTTCAAAATATTAATAAA-TTAGTATTATTTTATTTCG-AA
* *
15954359 TAAGCTTGCATGAAC-AAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATG
128 TAAGCTTGTATGAACTAAA-ACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * * *
15954413 TTTTG-AATAGATAATTGTTCAGATAGTCATAACTATTTGAATTTATTCGGTAAACATATTCT-T
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATT-TAT
* * * * * * * *
15954476 TTTTTAATTCTCTCACTCATTAATTTTTAGAATAATAATAAATTAGTATTATTTTACTTCAAATA
65 TTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
15954541 AGCTTATATGAATTGAAACAAGTGTTTTATTAGA-AGAGAAGAAAAGGTCATAATG
130 AGCTTGTATGAACTAAAACAATTGTTTTA-T-GACA-A-AACAAAAGGTCATAATG
* * * * *
15954596 ATTTGAAATAGATAATTATTCAAATATTAATGACTATTTAAACTTGTTTGGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
* * * * * * * *
15954661 TTTTAAATCTTTTACTTATTAATTGTGAAAATATTAATTAGTTAATATTATTTTAATTCAAATAA
66 TTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
* * * * *
15954726 ACTTGTATGAA-TAGAAATAATTATTTTATGACAAAACAAAAAGTCATAA-C
131 GCTTGTATGAACTA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* ** * * * *
15954776 ATGTTGAAATAAATAATTGCTCAAGTAGCCATAA-TGAATAGAACTTGTTTGGTAAATAGATTTA
1 AT-TTGAAATAGATAATTATTCAAATAGTCATAACT-ATTTGAACTTGTTTGGTAAATAGATTTA
* * ** *
15954840 -TTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAATTTGTATTATTTTATTT-GAAA
64 TTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCG-AA
* * * *
15954903 TAAGCTTAG-ATGAA-TAGAAAAAATT-TTTTATTACAAAAACAAAAGGTTATAGCT-
128 TAAGCTT-GTATGAACTA-AAACAATTGTTTTATGAC-AAAACAAAAGGTCATA-ATG
* * * * * * * * * *
15954957 ATTTCAAATAGATAATTATTC-AA-AGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
*** * *
15955020 TTTTAAATCTCTTTA-TTATTAATTTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATA
66 TTTTAAATCTC-TTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
15955084 AGCTTATATGAACTGAAACAACTCTTTTATGAC-AATCAAAAGGTCATAATG
130 AGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * *
15955135 ATTTGAAATAGATAATTATTCAAATTGTCATGATTATTTGATCTAGTGT-GT-AA-ACA--TATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
* * * * * * * *
15955195 TTTAAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATGCAAATA
66 TTT-TAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* ** *
15955260 AACTTGTATGAA-TAGAAACAATTGTTTTACAACAAAACAAAAATGTCATAATG
130 AGCTTGTATGAACTA-AAACAATTGTTTTATGACAAAAC-AAAAGGTCATAATG
* ** * * * *
15955313 ATTTGAAATAAATAATTGCTCAAATAATCATAACTATTTGAACTAGTTTGATACATAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
* * ** * * * * *
15955378 GTTTAAA----TGACTTATTAATTTTTGAAATATTAATAGATTGGTATTACTTTATTCCAAATAA
66 TTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
* * * * * * *
15955439 ACTTATATGAACAAAAACATTTGTTGTATGACAAAACAAAAAGTAATAATG
131 GCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * * *
15955490 ATTTGAAATATATAATTGTTGAAATAGT-ATAATTTTTTGAA-TTGGTTAGGTAAACAGAATTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTTGGTAAATAGATTTAT
* * * ** * *
15955553 TTTTTAAGTCTTTTACTTATTATTTTTTGAAATATTAATAAATTCA-TTTTATTTTATTTCAAAT
65 TTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATT-AGTATTATTTTATTTCGAAT
* * * * *
15955617 AAGCTAGTATGAATTGAGAA-ATTTGTTTTATGACAAGACAAAAGGTCATAACT-
129 AAGCTTGTATGAACT-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAA-TG
15955670 ATTTGAA
1 ATTTGAA
15955677 TTGGTTCAGC
Statistics
Matches: 1996, Mismatches: 430, Indels: 190
0.76 0.16 0.07
Matches are distributed among these distances:
174 2 0.00
175 15 0.01
176 237 0.12
177 168 0.08
178 199 0.10
179 167 0.08
180 594 0.30
181 265 0.13
182 199 0.10
183 30 0.02
184 120 0.06
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT
TTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
GCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
Found at i:15954856 original size:544 final size:534
Alignment explanation
Indices: 15952975--15955676 Score: 1971
Period size: 533 Copynumber: 5.0 Consensus size: 534
15952965 ATTCACAACA
* * * * * *
15952975 ATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTAGT
1 ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAATATATTTA-T
* * ** * * * ** *
15953040 TTTTCAAATATCCTGCTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTCGAAT
65 TTTTTAAATCTTTTACTTATTAAT-TGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAAT
* * ** * *
15953104 AAGCTTGTATGAACTA-AAACAATTATTTTATGATTAAACAAAAGGTCAAAATGATTTGAAATAG
129 AAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATA-
** * * * * ** * * *
15953168 AA-AATTATTCTAATAATCTTAACTATTTGAA-GTAATCGGCAAATACATTTATTTTTTAAATCT
192 AATAATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTA-TTTTTAAAT-T
** * * * *
15953231 CTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTTATTTG-AATAAGCTTATATG
255 -TTACTTATTAATTTT-TGAATATTAATAAATTTGTATTA-TTTTATTCGAAATAAGCTT-GATG
* * * * * * * *
15953295 ATAAAAAAATAATTATTTTATGACAAAAC-AAAGATCATAATGATTTGAGATTA-CTATTTGCTT
316 --AACAAAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGA-A-TAGATAATTG-TT
* * * * **** * ** ** * * * * *
15953358 AAATAGTTATAACTATTAGAACGACTTTGAAAAACAGCTTTAGTTTTTAAATCTGTTGCTTAATA
376 CAATAGTCATAATTATTTGAATTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTATTA
* * * * * * *
15953423 ATTTTT-GAAATATTAATAAAGTAGTATTATTTTATTTTAGATAAG-TTTTAATTAACTCAAACA
441 ATTTTTAG-AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTAT-ATGAATTGAAACA
* * * * * *
15953486 ATTGTTTTATGACAAAATAAAATGTCAAAATA
504 ACTCTTTTATGAC-AAACAAAAGGTCATAATG
* * * * * * * ** *
15953518 ATTTTAAACAGATAATTGTTTAAATAGTCAT-ATCTATTAGAAATTGTTCAGTAAATAGATTTAA
1 ATTTGAAATAGATAATTATTCAAATATTCATGA-CTATTTGAACTTGTTTGGTAAATATATTT-A
* * * * * * *
15953582 TTTTTTAAATCTCTT-GTT-TTAATTTTTC-GATTGTTAACAAATTAGTATTATTTT-ATTCAAA
64 TTTTTTAAATCTTTTACTTATTAA-TTGTCAAAATATTAATAAATTAGTATTATTTTAATTC-AA
* * ** * * *
15953643 ATAAGCTTGTATGAACT-GAAATAATAATTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAA
127 ATAAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAAG-TCATAATGATTTGAAA
* * * * * * * * *
15953706 TAGATAATT-ATTATGACAGTCTTAACTATTTAAACTAGTTTGACTAACAT--ATTTATTTTTTA
190 TAAATAATTGCTCA-AATAGTCATAACTATTTGAACTTGTTTG-GTAA-ATAGATTTA-TTTTTA
** * * * *
15953768 AA-ACT-CTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATCCG-AATAAGCTTGT
251 AATTTTACTTATTAATTTTTG-AATATTAATAAATTTGTATTATTTT-ATTCGAAATAAGCTTG-
* ** * * * * *
15953830 ATGAA-AGGAAACAATTGTTGTATGAC-AAAGTAAAGATCATTATGATTTGAGATAGATAATTGA
313 ATGAACA--AAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGA-ATAGATAATTGT
* * * * * * *
15953893 TCAAATAGTCATAACTATTTGAACTGGTTTA-GTAAATAGATTTAGTTTTTAAA--TC-T-CTTA
375 TC-AATAGTCATAATTATTTGAATTTG-TTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTA
* * * ** ** ** * * *
15953953 TTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATTTTGTATGAATAGAAAA
438 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAAC
* * * * **
15954018 AATTATTTTATGACAAAATAAAAGATCATAACA
503 AACTCTTTTATGAC-AAACAAAAGGTCATAATG
* * * * * * *
15954051 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGCTCGATAAATAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAATATATTTA-T
* *** * *
15954116 TTTTTAAATCTTTTACTTATTAATTTTTTGAAT-TTGAATAAATTAGTACTATTTTATTTCAAA-
65 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATT-AATAAATTAGTATTATTTTAATTCAAAT
* * * * * *
15954179 AAAGCTTTTATGACTAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAATGATTTGAAATAG
129 AAA-CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAA
** * ** * *
15954244 ATAATTATTCAAATAGTCATAACTATTTGAACGTGTTCAGAAAATATATTTATTTTTTAAAATTT
193 ATAATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTA-TTTTT-AAATTT
**
15954309 TACTTATTAATTTTTGGAATATTAATAAATTTAAATTATTTTATTCGAAATAAGCTTGCATGAAC
256 TACTTATTAATTTTT-GAATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTTG-ATGAAC
* *
15954374 AAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAATAGATAATTGTTCAGATAG
319 AAA-ACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAATAGATAATTGTTCA-ATAG
* * * * * * * *
15954439 TCATAACTATTTGAATTTATTCGGTAAACATATTCTTTTTTTAATTCTCTCACTCATTAATTTTT
382 TCATAATTATTTGAATTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTT
* * * *
15954504 AGAATAATAATAAATTAGTATTATTTTACTTCAAATAAGCTTATATGAATTGAAACAAGTGTTTT
447 AGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAACAACTCTTTT
* *
15954569 ATTAGAAGAGAAGAAAAGGTCATAATG
512 A-T-G-ACA-AACAAAAGGTCATAATG
* *
15954596 ATTTGAAATAGATAATTATTCAAATATTAATGACTATTTAAACTTGTTTGGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAATATATTTATT
* * * *
15954661 TTTTAAATCTTTTACTTATTAATTGTGAAAATATTAATTAGTTAATATTATTTTAATTCAAATAA
66 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAATAA
* * *
15954726 ACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAAGTCATAA-CATGTTGAAATAAAT
131 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAATGAT-TTGAAATAAAT
* * * *
15954790 AATTGCTCAAGTAGCCATAA-TGAATAGAACTTGTTTGGTAAATAGATTTATTTTTAAATCTTTT
195 AATTGCTCAAATAGTCATAACT-ATTTGAACTTGTTTGGTAAATAGATTTATTTTTAAA--TTTT
* *
15954854 ACTTATTAATTGTCTT-AATATTAATAAATTTGTATTATTTTATTTGAAATAAGCTTAGATGAAT
257 ACTTATTAATT-T-TTGAATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTT-GATGAAC
* * * * * ** *
15954918 AGAAAAAATT-TTTTATTACAAAAACAAAAGGTTATAGCTATTTCAAATAGATAATTATTCAA-A
319 A-AAACAATTGTTTTATGAC-AAAACAAAAGGTAATA-ATGTTTTGAATAGATAATTGTTCAATA
* * *
15954981 GTCCTAATTATTTAAATTTGTTTA-GTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATT
381 GTCATAATTATTTGAATTTG-TTAGGTAAACAAATTCATTTTTTAAATCTC-TTACTTATTAATT
* * ** *
15955044 TTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTGAAACAACTCT
444 TTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAACAACTCT
*
15955109 TTTATGACAATCAAAAGGTCATAATG
509 TTTATGACAAACAAAAGGTCATAATG
* * * * *
15955135 ATTTGAAATAGATAATTATTCAAAT-TGTCATGATTATTTGATCTAGTGT-GTAAACATA--T-T
1 ATTTGAAATAGATAATTATTCAAATAT-TCATGACTATTTGAACTTGTTTGGTAAATATATTTAT
** * * *
15955195 TTTAAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATGCAAATA
65 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAATA
**
15955260 AACTTGTATGAATAGAAACAATTGTTTTACAACAAAACAAAAATGTCATAATGATTTGAAATAAA
130 AACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAA-GTCATAATGATTTGAAATAAA
* * * * *
15955325 TAATTGCTCAAATAATCATAACTATTTGAACTAGTTTGATACATAGATTTATTGTTTAAA--TGA
194 TAATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATT-TTTAAATTTTA
* * * * * *
15955388 CTTATTAATTTTTGAAATATTAATAGATTGGTATTACTTTATTCCAAATAAACTTATATGAACAA
258 CTTATTAATTTTTG-AATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTT-GATGAAC-A
* * * * * *
15955453 AAACATTTGTTGTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTGAAATAGT
320 AAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTG-AATAGATAATTGTT-CAATAGT
* * * *
15955518 -ATAATTTTTTGAATTGGTTAGGTAAACAGAATT-ATTTTTTAAGTCTTTTACTTATT-ATTTTT
383 CATAATTATTTGAATTTGTTAGGTAAACA-AATTCATTTTTTAAATCTCTTACTTATTAATTTTT
* * ** *
15955580 TGAAATATTAATAAATTCA-TTTTATTTTATTTCAAATAAGC-TAGTATGAATTGAGAA-ATTTG
447 AG-AATATTAATAAATT-AGTATTATTTTATTTCAAATAAGCTTA-TATGAATTGA-AACAACTC
15955642 TTTTATGACAAGACAAAAGGTCATAACT-
508 TTTTATGACAA-ACAAAAGGTCATAA-TG
15955670 ATTTGAA
1 ATTTGAA
15955677 TTGGTTCAGC
Statistics
Matches: 1753, Mismatches: 317, Indels: 186
0.78 0.14 0.08
Matches are distributed among these distances:
531 2 0.00
532 5 0.00
533 241 0.14
534 120 0.07
535 239 0.14
536 78 0.04
537 100 0.06
538 169 0.10
539 78 0.04
540 10 0.01
541 109 0.06
542 87 0.05
543 190 0.11
544 227 0.13
545 96 0.05
546 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (534 bp):
ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAATATATTTATT
TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAATAA
ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATA
ATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTAAATTTTACTT
ATTAATTTTTGAATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTTGATGAACAAAACAA
TTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAATAGATAATTGTTCAATAGTCATAATTA
TTTGAATTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTA
ATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAACAACTCTTTTATGACAAAC
AAAAGGTCATAATG
Found at i:15955513 original size:16 final size:17
Alignment explanation
Indices: 15955492--15955523 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15955482 TAATAATGAT
15955492 TTGAAATA-TATAATTG
1 TTGAAATAGTATAATTG
15955508 TTGAAATAGTATAATT
1 TTGAAATAGTATAATT
15955524 TTTTGAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
TTGAAATAGTATAATTG
Found at i:15955789 original size:145 final size:146
Alignment explanation
Indices: 15955525--15955820 Score: 343
Period size: 145 Copynumber: 2.0 Consensus size: 146
15955515 AGTATAATTT
* * * ** * *
15955525 TTTGAATTGGTTAGGTAAACAGAATTATTTTTTAAGTCTTTTACTTATTATTTTTTGAAATATTA
1 TTTGAATTGGTTAGGCAAACAAAATTATTTTTTAAATCCCTTAATTATTAATTTTTGAAATATTA
* *
15955590 ATAAATTCATTTTATTTTATTTCAAATAAGCTAGTATGAATTGAGAAATTTGTTTTATGACAAGA
66 ATAAATTCATATTATTTTATTTCAAATAAGCTAGTATGAATTGAGAAATTTGTTTTATGACAAAA
15955655 CAAAAGGTCATAACT-A
131 CAAAAGGTCATAA-TGA
*
15955671 TTTGAATTGGTTCA-GCAAACAAAATT-TTTTTTAAATCCCTTAATTATTAATTTTTGGAATATT
1 TTTGAATTGGTT-AGGCAAACAAAATTATTTTTTAAATCCCTTAATTATTAATTTTTGAAATATT
* * * ** * *
15955734 ATTAGATT-AGTATTGTTTTATTTTGAATAAGTTTGTATGAA-T-AGAAATAATTGTTTTATGAC
65 AATAAATTCA-TATTATTTTATTTCAAATAAGCTAGTATGAATTGAGAAAT--TTGTTTTATGAC
*
15955796 AAAACAAAAGGTTATAATGA
127 AAAACAAAAGGTCATAATGA
15955816 TTTGA
1 TTTGA
15955821 TGTATAGAAT
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
143 6 0.05
144 3 0.02
145 95 0.75
146 22 0.17
147 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (146 bp):
TTTGAATTGGTTAGGCAAACAAAATTATTTTTTAAATCCCTTAATTATTAATTTTTGAAATATTA
ATAAATTCATATTATTTTATTTCAAATAAGCTAGTATGAATTGAGAAATTTGTTTTATGACAAAA
CAAAAGGTCATAATGA
Found at i:15957236 original size:18 final size:18
Alignment explanation
Indices: 15957213--15957265 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
15957203 TTAATTTATC
15957213 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
15957231 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
15957248 A-TAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
15957266 TAATTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:15957264 original size:17 final size:17
Alignment explanation
Indices: 15957220--15957269 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
15957210 ATCATTAATT
*
15957220 TTATAATATTA-ATTAA
1 TTATAATATTATAATAA
*
15957236 TTATAAAATATTATAATAC
1 TTAT--AATATTATAATAA
15957255 TTATAATATTATAAT
1 TTATAATATTATAAT
15957270 TAATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 11 0.38
18 7 0.24
19 7 0.24
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATAATATTATAATAA
Found at i:15957608 original size:16 final size:15
Alignment explanation
Indices: 15957566--15957613 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
15957556 GTATTAGTAA
*
15957566 TAATTAATTATATAT
1 TAATTAATAATATAT
*
15957581 TAATAAATTAATATAT
1 TAATTAA-TAATATAT
15957597 TAATTTAATAAT-TAT
1 TAA-TTAATAATATAT
15957612 TA
1 TA
15957614 TTATTAGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 11 0.39
16 14 0.50
17 3 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTAATAATATAT
Found at i:15957635 original size:17 final size:17
Alignment explanation
Indices: 15957604--15957645 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15957594 TATTAATTTA
* *
15957604 ATAATTATTATTATTAG
1 ATAATTATAAATATTAG
*
15957621 ATAATTATAAATATTAT
1 ATAATTATAAATATTAG
15957638 AT-ATTATA
1 ATAATTATA
15957646 CTTATATCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
ATAATTATAAATATTAG
Found at i:15957847 original size:21 final size:21
Alignment explanation
Indices: 15957823--15957890 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
15957813 TAAATGATTT
*
15957823 ATTATTATTTTATATTTTATA
1 ATTATTATTTTATATATTATA
* * **
15957844 ATTATAATTTAATATAAAATA
1 ATTATTATTTTATATATTATA
*
15957865 A-TATTATTTTATAATCTTATA
1 ATTATTATTTTAT-ATATTATA
15957886 ATTAT
1 ATTAT
15957891 AATATATTAA
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
20 9 0.26
21 23 0.66
22 3 0.09
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATTATTTTATATATTATA
Found at i:15958329 original size:18 final size:18
Alignment explanation
Indices: 15958298--15958332 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15958288 AAATAATAAT
15958298 TATTAATATATATAAATA
1 TATTAATATATATAAATA
15958316 TATT-ATATATTATAAAT
1 TATTAATATA-TATAAAT
15958333 TATAAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAATATATATAAATA
Found at i:15958427 original size:57 final size:60
Alignment explanation
Indices: 15958357--15958475 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 60
15958347 AGATTATATA
* *
15958357 TAATTAAGTAATATTAAA-ATATATTATCTAATAATATT-TA-TATA-ATATTAT-ATTATT
1 TAATTAAGTAATATTAAATAT-TAATAT-TAATAATATTATATTAAATATATTATAATTATT
*
15958414 TAATTAA-TGAATATTAAATATTAATATTAATTATATTATATTAAATATATTATAATTATT
1 TAATTAAGT-AATATTAAATATTAATATTAATAATATTATATTAAATATATTATAATTATT
15958474 TA
1 TA
15958476 TAATATAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
56 10 0.19
57 23 0.43
58 5 0.09
59 7 0.13
60 8 0.15
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (60 bp):
TAATTAAGTAATATTAAATATTAATATTAATAATATTATATTAAATATATTATAATTATT
Found at i:15958456 original size:20 final size:19
Alignment explanation
Indices: 15958403--15958495 Score: 77
Period size: 20 Copynumber: 4.7 Consensus size: 19
15958393 TTTATATAAT
15958403 ATTATATTAT-TTAAT-TA
1 ATTATATTATATTAATATA
*
15958420 ATGAATATTAAATATTAATATTA
1 AT-TATATT--ATATTAATA-TA
15958443 ATTATATTATATTAA-ATA
1 ATTATATTATATTAATATA
*
15958461 TATTATAATTATTTATAATATA
1 -ATTAT-ATTATAT-TAATATA
15958483 ATTATATT-TATTA
1 ATTATATTATATTA
15958496 TAATGTAATA
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
17 2 0.03
18 9 0.15
19 8 0.13
20 18 0.29
21 13 0.21
22 8 0.13
23 4 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (19 bp):
ATTATATTATATTAATATA
Found at i:15958496 original size:20 final size:20
Alignment explanation
Indices: 15958435--15958504 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
15958425 TATTAAATAT
15958435 TAATATTAATTATATTATATTA
1 TAATA-TAATTATATT-TATTA
*
15958457 -AATAT-ATTATAATTATTTA
1 TAATATAATTATATTTA-TTA
15958476 TAATATAATTATATTTATTA
1 TAATATAATTATATTTATTA
*
15958496 TAATGTAAT
1 TAATATAAT
15958505 AATAAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.05
19 10 0.24
20 17 0.40
21 13 0.31
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (20 bp):
TAATATAATTATATTTATTA
Found at i:15958497 original size:15 final size:15
Alignment explanation
Indices: 15958447--15958499 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15958437 ATATTAATTA
* *
15958447 TATTAT-ATTAAATA
1 TATTATAATTATATT
15958461 TATTATAATTAT-TT
1 TATTATAATTATATT
*
15958475 ATAATATAATTATATT
1 -TATTATAATTATATT
15958491 TATTATAAT
1 TATTATAAT
15958500 GTAATAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 7 0.22
15 23 0.72
16 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTATAATTATATT
Found at i:15959482 original size:181 final size:179
Alignment explanation
Indices: 15959142--15959920 Score: 744
Period size: 181 Copynumber: 4.3 Consensus size: 179
15959132 TTGTTTCAAC
* * * * * * *
15959142 TCATACATGCTTATTCAAAATAAAATAATATTAATTTATTAACATTCAGAAAATTATTAAG--A-
1 TCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTTAG
* * * * * * *
15959204 A-A--TAAGAAAA-AAAATATTTACCGAA-CAAGTTCAAATATTTTTGACTATTTGAACAATTAT
65 AGATTTAA-AAAATAAATTGTTTATCGAATCAA-TTCAAATAGTTATGGCTATTTAAACAATTAT
* * * * * *
15959264 CTATTTAAAATCGTTATG-ACCTTATATTTTATCATAAAACAATTGTTTCAGT
128 CTATTTCAAATCATTATGAACATTTTGTTTTGTCATAAAACAATTGTTT-AGT
* * * * *
15959316 TCATAAAAGCTTATCTGAAATAAAATAATATTACTATATTAATA-TTATAAAAATTGATAAGTTA
1 TCATACAAGCTTAT-TGAAATAAAATAATACTAATTTATTAATATTTA-AAAAATTAATAAGTTA
* * **
15959380 GAGATTTAAAACATAAATTAGTTTATCGAATCAATTCAAATAATTATGGCCGTTTAAACAATTAT
64 GAGATTTAAAAAATAAATT-GTTTATCGAATCAATTCAAATAGTTATGGCTATTTAAACAATTAT
*
15959445 CTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATAAAACAATTGCTTT-TT
128 CTATTTCAAATCATTATGAACATTTTGTTTTGTCATAAAACAATTG-TTTAGT
* *
15959496 ATCATACAAGCCTATTCATAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAG-TA
1 -TCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTTA
* * *
15959560 GGAGATTTAAAAAAATAAATCTGTTTATCGAATCAATTCAAATAGCTATGACTATTTGAACAATT
64 -GAGATTT-AAAAAATAAAT-TGTTTATCGAATCAATTCAAATAGTTATGGCTATTTAAACAATT
* * * *
15959625 ATATATTTCCAATCATTAT-AACATTTTGTTTTGTCATAAAACAATTATTTATCT
126 ATCTATTTCAAATCATTATGAACATTTTGTTTTGTCATAAAACAATTGTTTA-GT
* * * * * * * *
15959679 TCATACAAGCTTATTCGAAATAAAATAATACCAATCTAGTAATA-TTATGAAATTTAAAAACTGA
1 TCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATTTA-AAAAATTAATAAGTTA
* * * * *
15959743 TAGATTTAAAAAATAAATTTGTTTATCGAACCAATTCAAATAGTTAAGGCTATATAAATAATTAT
64 GAGATTTAAAAAATAAA-TTGTTTATCGAATCAATTCAAATAGTTATGGCTATTTAAACAATTAT
* *
15959808 CAATTTCAAATCATTATG-ACATTTTGTTTTGTCATAAAACAAATGTTTTAGT
128 CTATTTCAAATCATTATGAACATTTTGTTTTGTCATAAAACAATTG-TTTAGT
* * * * *
15959860 TCATATAAGTTTGTTTGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
1 TCATACAAGCTT-ATTGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAG
15959921 AGATTTAATA
Statistics
Matches: 495, Mismatches: 80, Indels: 53
0.79 0.13 0.08
Matches are distributed among these distances:
173 2 0.00
174 46 0.09
175 1 0.00
176 1 0.00
177 1 0.00
178 1 0.00
179 3 0.01
180 12 0.02
181 265 0.54
182 159 0.32
183 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.39
Consensus pattern (179 bp):
TCATACAAGCTTATTGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTTAGA
GATTTAAAAAATAAATTGTTTATCGAATCAATTCAAATAGTTATGGCTATTTAAACAATTATCTA
TTTCAAATCATTATGAACATTTTGTTTTGTCATAAAACAATTGTTTAGT
Found at i:15959835 original size:363 final size:353
Alignment explanation
Indices: 15959142--15959921 Score: 879
Period size: 363 Copynumber: 2.2 Consensus size: 353
15959132 TTGTTTCAAC
* * * * *
15959142 TCATACATGCTTATTCAAAATAAAATAATATTAATTTATTAACATTCAGAAAATTATTAAGAAAT
1 TCATACAAGCTTATTC-AAATAAAATAATATTAATTTATTAATATTTAAAAAATTAATAAGAAAT
** * *
15959207 AAGAAAAAAAATATTTACCGAACAAGTTCAAATATTTTTGACTATTTGAACAATTATCTATTTAA
65 AAGAAAAAAAATATTTACCGAACAAGTTCAAATAGCTATGACTATTTGAACAATTATATATTTAA
* * * * *
15959272 AATCGTTATGACCTTATATTTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATCTGAAAT
130 AATCATTATAACATTATATTTTATCATAAAACAATTATTTCACTTCATAAAAGCTTATCTGAAAT
** * * * * * * *
15959337 AAAATAATATTACTATATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATTAGT
195 AAAATAATACCAATATAGTAATATTATAAAAATTAAAAACTGAGAGATTTAAAAAATAAATTAGT
* * * * *
15959402 TTATCGAATCAATTCAAATAATTATGGCCGTTTAAACAATTATCTATTTCAAATCATTATGAACT
260 TTATCGAACCAATTCAAATAATTAAGGCCATATAAACAATTATCAATTTCAAATCATTATGAACT
*
15959467 TTTGTTTTGTCATAAAACAATTGCTTTTTA-
325 TTTGTTTTGTCATAAAACAAATG--TTTTAG
* *
15959497 TCATACAAGCCTATTCATAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAGG
1 TCATACAAGCTTATTCA-AATAAAATAATATTAATTTATTAATATTTAAAAAATTAATAAG-A--
* *
15959562 AGATTTAA-AAAAATAAATCTGTTTATCGAATCAA-TTCAAATAGCTATGACTATTTGAACAATT
62 A-A--TAAGAAAAA-AAA--TATTTACCGAA-CAAGTTCAAATAGCTATGACTATTTGAACAATT
** * * * *
15959625 ATATATTTCCAATCATTATAACATTTTGTTTTGTCATAAAACAATTATTT-ATCTTCATACAAGC
120 ATATATTTAAAATCATTATAACATTATATTTTATCATAAAACAATTATTTCA-CTTCATAAAAGC
* * * *
15959689 TTAT-TCGAAATAAAATAATACCAATCTAGTAATATTATGAAATTTAAAAACTGATAGATTTAAA
184 TTATCT-GAAATAAAATAATACCAATATAGTAATATTATAAAAATTAAAAACTGAGAGATTTAAA
* * * *
15959753 AAATAAATTTGTTTATCGAACCAATTCAAATAGTTAAGGCTATATAAATAATTATCAATTTCAAA
248 AAATAAATTAGTTTATCGAACCAATTCAAATAATTAAGGCCATATAAACAATTATCAATTTCAAA
15959818 TCATTATG-ACATTTTGTTTTGTCATAAAACAAATGTTTTAG
313 TCATTATGAAC-TTTTGTTTTGTCATAAAACAAATGTTTTAG
* * * * *
15959859 TTCATATAAGTTTGTTTGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGA
1 -TCATACAAGCTT-ATTCAAATAAAATAATATTAATTTATTAATATTTAAAAAATTAATAAGA
15959922 GATTTAATAA
Statistics
Matches: 354, Mismatches: 54, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
354 1 0.00
355 52 0.15
356 1 0.00
358 1 0.00
359 1 0.00
360 5 0.01
361 11 0.03
362 5 0.01
363 271 0.77
364 6 0.02
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.39
Consensus pattern (353 bp):
TCATACAAGCTTATTCAAATAAAATAATATTAATTTATTAATATTTAAAAAATTAATAAGAAATA
AGAAAAAAAATATTTACCGAACAAGTTCAAATAGCTATGACTATTTGAACAATTATATATTTAAA
ATCATTATAACATTATATTTTATCATAAAACAATTATTTCACTTCATAAAAGCTTATCTGAAATA
AAATAATACCAATATAGTAATATTATAAAAATTAAAAACTGAGAGATTTAAAAAATAAATTAGTT
TATCGAACCAATTCAAATAATTAAGGCCATATAAACAATTATCAATTTCAAATCATTATGAACTT
TTGTTTTGTCATAAAACAAATGTTTTAG
Found at i:15960257 original size:41 final size:41
Alignment explanation
Indices: 15960212--15960298 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 41
15960202 AGTTTAAGAT
*
15960212 TATTAC-TAATTATTATAGTACTTATAATTA-AT-TATTATTAA
1 TATTACTTAATTA-TATACTA-TTATAATTATATGTATTA-TAA
*
15960253 TATTACTTAATTATATACTATTATTATTATATGTATTATAA
1 TATTACTTAATTATATACTATTATAATTATATGTATTATAA
15960294 TATTA
1 TATTA
15960299 TAACTAATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
40 8 0.20
41 22 0.54
42 11 0.27
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (41 bp):
TATTACTTAATTATATACTATTATAATTATATGTATTATAA
Found at i:15960264 original size:20 final size:18
Alignment explanation
Indices: 15960238--15960316 Score: 63
Period size: 20 Copynumber: 4.1 Consensus size: 18
15960228 AGTACTTATA
15960238 ATTAATTATTATTAATATT
1 ATTAATTATTA-TAATATT
*
15960257 ACTTAATTATATACTATTATT
1 A-TTAATTAT-TA-TAATATT
15960278 ATTATATGTATTATAATATT
1 ATTA-AT-TATTATAATATT
*
15960298 A-TAACTAATTATAAT-TT
1 ATTAA-TTATTATAATATT
15960315 AT
1 AT
15960317 ATAAAATAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.06
18 9 0.18
19 4 0.08
20 18 0.36
21 13 0.26
22 3 0.06
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (18 bp):
ATTAATTATTATAATATT
Found at i:15960299 original size:17 final size:18
Alignment explanation
Indices: 15960277--15960318 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
15960267 ATACTATTAT
*
15960277 TATTATATGT-ATTATAA
1 TATTATATCTAATTATAA
*
15960294 TATTATAACTAATTATAA
1 TATTATATCTAATTATAA
15960312 T-TTATAT
1 TATTATAT
15960319 AAAATAGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TATTATATCTAATTATAA
Found at i:15960309 original size:30 final size:30
Alignment explanation
Indices: 15960210--15960318 Score: 87
Period size: 33 Copynumber: 3.5 Consensus size: 30
15960200 ACAGTTTAAG
* * *
15960210 ATTATTACTAATTATTATAGTACTTATAATTA
1 ATTATTATTAA-TATTATAATA-TTATAACTA
*
15960242 ATTATTATTAATATTACTTA-ATTATATACT-
1 ATTATTATTAATATTA-TAATATTATA-ACTA
15960272 ATTATTATTATATGTATTATAATATTATAACTA
1 ATTATTATTA-A--TATTATAATATTATAACTA
* *
15960305 ATTATAATTTATAT
1 ATTATTATTAATAT
15960319 AAAATAGTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
30 18 0.29
31 9 0.14
32 17 0.27
33 19 0.30
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (30 bp):
ATTATTATTAATATTATAATATTATAACTA
Found at i:15960352 original size:19 final size:19
Alignment explanation
Indices: 15960338--15960374 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15960328 ACAATTATTA
15960338 ATTATATTATTAATTAAAT
1 ATTATATTATTAATTAAAT
*
15960357 ATTTTATTATTAATTAAA
1 ATTATATTATTAATTAAA
15960375 ATAAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTATATTATTAATTAAAT
Found at i:15960363 original size:16 final size:15
Alignment explanation
Indices: 15960331--15960369 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
15960321 AATAGTAACA
*
15960331 ATTATTAATTATATT
1 ATTATTAAATATATT
*
15960346 ATTAATTAAATATTTT
1 ATT-ATTAAATATATT
15960362 ATTATTAA
1 ATTATTAA
15960370 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTATTAAATATATT
Found at i:15960463 original size:22 final size:22
Alignment explanation
Indices: 15960433--15960474 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15960423 TTAAATAAAT
*
15960433 ATTATTAATTAAATTATTATAC
1 ATTAATAATTAAATTATTATAC
* *
15960455 ATTAATAATTTATTTATTAT
1 ATTAATAATTAAATTATTAT
15960475 TGTTATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTAATAATTAAATTATTATAC
Found at i:15960572 original size:20 final size:19
Alignment explanation
Indices: 15960532--15960575 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
15960522 TAATTATTAG
* *
15960532 ATAAATTATAATTGTTTAT
1 ATAATTTATAATTGCTTAT
15960551 ATAATTTATAATTTGCTTAT
1 ATAATTTATAA-TTGCTTAT
15960571 ATAAT
1 ATAAT
15960576 AGAATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (19 bp):
ATAATTTATAATTGCTTAT
Found at i:15960626 original size:15 final size:13
Alignment explanation
Indices: 15960589--15960627 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
15960579 ATAATATTAA
15960589 ATATATTAATAAT
1 ATATATTAATAAT
15960602 ATATATTTAATAGAT
1 ATATA-TTAATA-AT
15960617 ATATTATTAAT
1 ATA-TATTAAT
15960628 TATAATTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.22
14 6 0.26
15 10 0.43
16 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (13 bp):
ATATATTAATAAT
Found at i:15960880 original size:10 final size:10
Alignment explanation
Indices: 15960867--15960930 Score: 51
Period size: 10 Copynumber: 6.3 Consensus size: 10
15960857 TTCTGTTTTA
15960867 TATTAATAAT
1 TATTAATAAT
15960877 TATTAAACTAA-
1 TATT-AA-TAAT
* *
15960888 TATTATTTATT
1 TATTA-ATAAT
15960899 TATTAAT-AT
1 TATTAATAAT
**
15960908 TATTAATCCT
1 TATTAATAAT
15960918 TATTAATAAT
1 TATTAATAAT
15960928 TAT
1 TAT
15960931 ATTAATAAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
9 8 0.19
10 20 0.48
11 11 0.26
12 3 0.07
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (10 bp):
TATTAATAAT
Found at i:15960907 original size:17 final size:18
Alignment explanation
Indices: 15960885--15960930 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 18
15960875 ATTATTAAAC
*
15960885 TAATATTATTTAT-TTAT
1 TAATATTATTAATCTTAT
15960902 TAATATTATTAATCCTTAT
1 TAATATTATTAAT-CTTAT
15960921 TAATAATTAT
1 TAAT-ATTAT
15960931 ATTAATAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 12 0.48
19 8 0.32
20 5 0.20
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (18 bp):
TAATATTATTAATCTTAT
Found at i:15961340 original size:19 final size:19
Alignment explanation
Indices: 15961316--15961354 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15961306 GCCTTCTCAA
15961316 TTAAA-TATTTATATTATAT
1 TTAAATTATTTATA-TATAT
*
15961335 TTAAATTATTTTTATATAT
1 TTAAATTATTTATATATAT
15961354 T
1 T
15961355 AATTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATTATTTATATATAT
Found at i:15961498 original size:7 final size:7
Alignment explanation
Indices: 15961473--15961507 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
15961463 TAAATTATCT
15961473 TAATTAA
1 TAATTAA
*
15961480 TAGATAAA
1 TA-ATTAA
15961488 TAATTAA
1 TAATTAA
15961495 TAATTAA
1 TAATTAA
15961502 TAATTA
1 TAATTA
15961508 TTATTTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (7 bp):
TAATTAA
Found at i:15961849 original size:27 final size:27
Alignment explanation
Indices: 15961816--15961895 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
15961806 TAATCTGCTC
15961816 ATTAATAAATTTATTACAATTAAAT-T
1 ATTAATAAATTTATTACAATTAAATGT
* * *
15961842 AGTTAATAATTTTATAATAATTAAATGT
1 A-TTAATAAATTTATTACAATTAAATGT
15961870 ATATAATCAAATTATATTACAATTAA
1 AT-TAAT-AAATT-TATTACAATTAA
15961896 TTTATTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 22 0.51
28 6 0.14
29 4 0.09
30 10 0.23
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (27 bp):
ATTAATAAATTTATTACAATTAAATGT
Found at i:15963638 original size:181 final size:179
Alignment explanation
Indices: 15963435--15963765 Score: 434
Period size: 181 Copynumber: 1.8 Consensus size: 179
15963425 CAACTATATA
* *
15963435 AACAATTGTCTATTTAAAATTGTTATGACCTTTCATTTTGTCATAAAACAATTGTTTCAATTTAT
1 AACAATTATCTATTTAAAATTGTTATGACCTTTCATTTGGTCATAAAACAATTGTTT-AATTTAT
* *
15963500 -AT-AAGCTTATTCGAAAT-AAAATAGTACTAATTTATTAATATTCCAAAAATGAATAAGTACAT
65 CATAAAGCTTATTCAAAATAAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAG---A-
* *
15963562 GATTTAAAAAGTGAATCTGTTTACTGAATCAGTTCAAATAGTTATGGCCATTTC
126 GATTTAAAAAATAAATCTGTTTACTGAATCAGTTCAAATAGTTATGGCCATTTC
* * ** * * **
15963616 AACAATTATCTATTTCAAATTGTTATTACCTTTTGTTTGGTCATATAACAGTTGTTTTTTTTATC
1 AACAATTATCTATTTAAAATTGTTATGACCTTTCATTTGGTCATAAAACAATTGTTTAATTTATC
* * *
15963681 ATACAAGCTTATTCAAAATAAAAATAATACTAATTTATTAATCTTTCAAAAATTAATAAGAGATT
66 ATA-AAGCTTATTCAAAATAAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAGAGATT
15963746 TAAAAAATAAATCTGTTTAC
130 TAAAAAATAAATCTGTTTAC
15963766 CAAACTAGTT
Statistics
Matches: 129, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
180 27 0.21
181 52 0.40
183 14 0.11
184 36 0.28
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (179 bp):
AACAATTATCTATTTAAAATTGTTATGACCTTTCATTTGGTCATAAAACAATTGTTTAATTTATC
ATAAAGCTTATTCAAAATAAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAGAGATTT
AAAAAATAAATCTGTTTACTGAATCAGTTCAAATAGTTATGGCCATTTC
Found at i:15963882 original size:35 final size:37
Alignment explanation
Indices: 15963800--15963882 Score: 84
Period size: 38 Copynumber: 2.2 Consensus size: 37
15963790 TATATAAGTT
*
15963800 TATTAATATAATTAATTAATTATATTAAATGATACAAC
1 TATTAA-ATAATTAATTAATTATATTAAATAATACAAC
15963838 TGATATAAATAATT-ATTAATTATGA-TAAATAATTA-AA-
1 T-AT-TAAATAATTAATTAATTAT-ATTAAATAA-TACAAC
15963875 TATTAAAT
1 TATTAAAT
15963883 TGTTCATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
35 5 0.12
36 2 0.05
37 1 0.03
38 18 0.45
39 11 0.28
40 3 0.08
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (37 bp):
TATTAAATAATTAATTAATTATATTAAATAATACAAC
Found at i:15963965 original size:16 final size:18
Alignment explanation
Indices: 15963934--15963968 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
15963924 TTAATTTGTA
15963934 TACAATTATAAATATTAT
1 TACAATTATAAATATTAT
15963952 TACAA-TAT-AATATTAT
1 TACAATTATAAATATTAT
15963968 T
1 T
15963969 GTAAATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TACAATTATAAATATTAT
Found at i:15964439 original size:10 final size:9
Alignment explanation
Indices: 15964404--15964442 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
15964394 ATTAAATGTT
15964404 TAATAATTA
1 TAATAATTA
*
15964413 T-ATAGTTA
1 TAATAATTA
15964421 TAATAATTA
1 TAATAATTA
15964430 TAACTAATTA
1 TAA-TAATTA
15964440 TAA
1 TAA
15964443 ATATTAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 7 0.27
9 10 0.38
10 9 0.35
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (9 bp):
TAATAATTA
Found at i:15964498 original size:18 final size:18
Alignment explanation
Indices: 15964457--15964498 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
15964447 TAATAATTCA
15964457 ATATTAATTAAAAAATTT
1 ATATTAATTAAAAAATTT
* *
15964475 AAATTAATTATAAGAA-TT
1 ATATTAATTA-AAAAATTT
15964493 ATATTA
1 ATATTA
15964499 GGTTCTATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATTAATTAAAAAATTT
Found at i:15971470 original size:171 final size:173
Alignment explanation
Indices: 15971163--15972734 Score: 707
Period size: 181 Copynumber: 8.8 Consensus size: 173
15971153 AAATGTTTCT
* * ** * * *
15971163 ATAGCCTTAACTATTTGAACTGGTTTAGCAAATAAATTTATTTTTTAAATCTATTAGTTATTAAT
1 ATAGCCATAACTATTTGAACTGGTTCAATAAACAGATTTATTTTTTAAATCT-TTACTTATTAAT
* * * * ** * * *
15971228 TTTTAGAATATTATTACATTAGTATTATTTTATTCTGAATAAATTTGTATGAATAGAAATAATTA
65 TTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTTGTATG-ATAAAAACAATTG
*
15971293 TTTTATGAAAGAACAAAAGGTT-AT-A-A-GAAATTG-AAA-TACAA
128 TTTTATGAAA-AACAAAAGGTTCATAAGATGAAATAGAAAAGTACAA
* * *
15971334 ATAGTCATAACTATTTGAATTGGTTCAATAAACAGATTTATTTTTTAAATCTCCTACTTATTAAT
1 ATAGCCATAACTATTTGAACTGGTTCAATAAACAGATTTATTTTTTAAATCT-TTACTTATTAAT
*
15971399 TTTTAAAATATTAATAAATTAATATTATTTTATTATGAATAAGCTAGTATGATGAAAAACAATTG
65 TTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTTGTATGAT-AAAAACAATTG
* *
15971464 TTTTATGTCAAAACAAAA-GTTCATAATGATTTGAAATAGATAAATGTTCAA
128 TTTTATG-AAAAACAAAAGGTTCATAA-GA--TGAAATAGA-AAA-GTACAA
* * * * * * *
15971515 ATGGCCATAA-TCATTTTAACTGATTCGATAAACTGATTTATGTTTTAAATCTTTAACTTATCAA
1 ATAGCCATAACT-ATTTGAACTGGTTCAATAAACAGATTTATTTTTTAAATCTTT-ACTTATTAA
* * * * * * *
15971579 TTTTTGAAATATTAATAAAGTAATACTATTTTATTTGGGACAAGCTTTTATGATCTAAAACAATT
64 TTTTTAAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTGTATGAT-AAAAACAATT
* * * * *
15971644 GTTTTATGATAAAACAAAAGG-TCACAATGATTTTAGATAGATAATTATTCAA
127 GTTTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGAAAAGTA--CAA
** * * ** * * * *
15971696 ATAGTTATTACTATTTGAACTTGTTCGGTAAATAAATTTATTTTTTTAAATTTCTTGCTTATTAA
1 ATAGCCATAACTATTTGAACTGGTTCAATAAACAGATTTA-TTTTTTAAATCT-TTACTTATT-A
* * * * * *
15971761 ATTTCT-AAATGTTAATAAATTAGTATTATTTTATTTTGACTAAGCATGTATGA-ACTGAAACAA
63 ATTTTTAAAATATTAATAAATTAATATTATTTTA-TTTGAATAAGCTTGTATGATA--AAAACAA
* * * * * * *
15971824 TTATTTTATGAGTAAACAAAATGTT-AGAATGATTTGAAATAGATAATTGTTCTA
125 TTGTTTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGA-AA-AGTACAA
* * * * * * * *
15971878 ACAGTCTTAACTATTTAAACTGGATCAACAAACACATTTATTTTTTAAATCCTTACTTATTAATT
1 ATAGCCATAACTATTTGAACTGGTTCAATAAACAGATTTATTTTTTAAATCTTTACTTATTAATT
* * * ** * * * *
15971943 TTTAGAATATTATTAACTTAGCAATATTTTACTCTGAATAAGCTTGTATGAATAGAAACAAATGT
66 TTTAAAATATTAATAAATTAATATTATTTTA-TTTGAATAAGCTTGTATG-ATAAAAACAATTGT
* * * * **
15972008 TTTAGGACAAAAC-AAA-GATCATAACGATTTGAGATAGATAATTGTTTAA
129 TTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGA-AA-AGTACAA
** * * ** * * *
15972057 ATAGTTATAACTA-TTAAAGCTAGTTCGGTAAAGAGATTTAGTTTTTAAA-C-CT-CTTATTAAT
1 ATAGCCATAACTATTTGAA-CTGGTTCAATAAACAGATTTATTTTTTAAATCTTTACTTATTAAT
* * * * * * *
15972118 TTTTTAAATAGTAATAAATTATTATTATTTTATTATAAATAA-TTGTGTATGAATAGAAATAATT
65 TTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCT-TGTATG-ATAAAAACAATT
* * * * *
15972182 GTTTTATAATAAAATAAAATG-TCATAACAATTTGAAATAGATAATAGTTCAA
127 GTTTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGA-AA-AGTACAA
* * * * *
15972234 ATGGACATGAA-TATTTGAACAGGTTCAATAAACTA-ATTAATTTTTTAAATCTTCAACTTATTA
1 ATAGCCAT-AACTATTTGAACTGGTTCAATAAAC-AGATTTATTTTTTAAATCTT-TACTTATTA
* * * * * * *
15972297 ATTTTTAGAATGTTAATATATTAGTATTATTTTATTCTAAATAA----ATATGAATAGAAACAAT
63 ATTTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTTGTATG-ATAAAAACAAT
* * * *
15972358 TGTTTTATAACAAAAC-AAA-GATCATAACAATTTGAAATA-AATAATTGTTCAA
126 TGTTTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGAA-AA--GTACAA
* ** ** ** * *
15972410 ACAATCATAACTATTTGAACTCACTT-GGTAAACAAATTTATTTTTTAAATCTTTTACTTA-CAA
1 ATAGCCATAACTATTTGAACT-GGTTCAATAAACAGATTTATTTTTTAAATC-TTTACTTATTAA
* ** * ** *
15972473 ATTTTGGAATATTAATTAATTAGA-ATTATTTTATTCCAAATAAGCTTGTTTGA-ACAGAAACAA
64 TTTTTAAAATATTAATAAATTA-ATATTATTTTATT-TGAATAAGCTTGTATGATA-A-AAACAA
* * * *
15972536 TTGGTTTATGACAAAACAAATGG-TCATAACGATTTGAAATAGATAATTGTTCAA
125 TTGTTTTATGA-AAAACAAAAGGTTCATAA-GA--TGAAATAGA-AA-AGTACAA
* * * *
15972590 ATAGTCATAACTATTTGAAC-GTGTTCAGA-AAATAGCTTTATTTTCTAAAAT-TTTACTTATTA
1 ATAGCCATAACTATTTGAACTG-GTTCA-ATAAACAGATTTATTTT-TTAAATCTTTACTTATTA
** * * ** * * * *
15972652 ATTTTTGGAATAGTAATAAATTTATATTATTTTATTCAAAATATGCTTGCATGAATAGAACCAAT
63 ATTTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTTGTATG-ATAAAAACAAT
15972717 TGTTTTATGACAAAACAA
126 TGTTTTATGA-AAAACAA
15972735 GATGTCATAA
Statistics
Matches: 1094, Mismatches: 233, Indels: 139
0.75 0.16 0.09
Matches are distributed among these distances:
170 5 0.00
171 121 0.11
172 3 0.00
174 3 0.00
175 45 0.04
176 132 0.12
177 99 0.09
178 18 0.02
179 104 0.10
180 190 0.17
181 236 0.22
182 124 0.11
183 13 0.01
184 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (173 bp):
ATAGCCATAACTATTTGAACTGGTTCAATAAACAGATTTATTTTTTAAATCTTTACTTATTAATT
TTTAAAATATTAATAAATTAATATTATTTTATTTGAATAAGCTTGTATGATAAAAACAATTGTTT
TATGAAAAACAAAAGGTTCATAAGATGAAATAGAAAAGTACAA
Found at i:15972192 original size:20 final size:19
Alignment explanation
Indices: 15972154--15972198 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
15972144 ATTTTATTAT
15972154 AAATAATTGTGTATGAATA
1 AAATAATTGTGTATGAATA
*
15972173 GAAATAATTGTTTTAT-AATA
1 -AAATAATTG-TGTATGAATA
15972193 AAATAA
1 AAATAA
15972199 AATGTCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 6 0.26
20 13 0.57
21 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
AAATAATTGTGTATGAATA
Found at i:15972203 original size:356 final size:358
Alignment explanation
Indices: 15970972--15974297 Score: 1858
Period size: 356 Copynumber: 9.3 Consensus size: 358
15970962 TAATTTATTT
* * * * * * * * *
15970972 TAATTATTCAAATAGTCATAATTATTTCAATTGGTTCAGCAAACAAAATTATTTATTAAAT-CT-
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCCTA
* * * ** * *
15971035 CTTATTGATTAATTTTTGAAATATTAATAAATT-TTTTTATTTTATTCCAAATAAGTT-AGTAAG
66 CTTATT-A--AATTTTT-AAATAGTAATAAATTAGTATTATTTTATTATAAATAA-TTGTGTATG
* * ** * * * * *
15971098 AACT-GAAAAAATTATTTTACGATAAAACAAAATGTCATAACAATTTAAAATAAAGAAATGTTTC
126 AA-TAGAAACAATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTG-TTC
* * * * * * * *
15971162 -TATAGCCTTAACTATTTGAACTGGTTTAGCAAATAAATTTATTTTTTAAATCTATTAGTTATTA
189 AAATAGTCTTAACTATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATC-CTTACTTATTA
** *
15971226 ATTTTTAGAATATTATT-ACATTAGTATTATTTTATTCTGAATAAATTTGTATGAATAGAAATAA
253 ATTTTTAGAATATTATTAAC-TTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAACAA
* * * *
15971290 TTATTTTATGA-AAGAACAAAAGGTTAT-A--A---GAAATTGA
317 TTGTTTTATGACAA-AAC-AAAGATCATAACGATTTGAAATAGA
* * * ** *
15971327 -AA---TACAAATAGTCATAACTATTTGAATTGGTTCAATAAACAGATTTATTTTTTAAATCTCC
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAA--TCC
* * *
15971388 TACTTATT-AATTTTTAAAATATTAATAAATTAATATTATTTTATTATGAATAA--GCTAGTATG
64 TACTTATTAAATTTTT-AAATAGTAATAAATTAGTATTATTTTATTATAAATAATTG-T-GTATG
* * * *
15971450 -ATGAAAAACAATTGTTTTAT-GTCAAAACAAAA-GTTCATAATGATTTGAAATAGATAAATGTT
126 AAT-AGAAACAATTGTTTTATAAT-AAAACAAAATG-TCATAACGATTTGAAATAGATAATTGTT
* * * * * * * ** * *
15971512 CAAATGGCCATAA-TCATTTTAACTGATTCGATAAACTGATTTATGTTTTAAATCTTTAACTTAT
188 CAAATAGTCTTAACT-ATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATCCTT-ACTTAT
* * ** * * * * * *
15971576 CAATTTTT-GAAATATTAATAAAGTAATACTATTTTATT-TGGGACAAGCTTTTATGATCTA-AA
251 TAATTTTTAG-AATATTATTAACTTAGTATTATTTTATTCT-GAATAAGCTTGTATGA-ATAGAA
* * * * * *
15971638 ACAATTGTTTTATGATAAAACAAAAGGTCACAATGATTTTAGATAGA
313 ACAATTGTTTTATGACAAAAC-AAAGATCATAACGATTTGAAATAGA
* * * * *
15971685 TAATTATTCAAATAGTTATTACTATTTGAACTTGTTCGGTAAATAAATTTATTTTTTTAAATTTC
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTA-TTTTTTAAA--TC
* * * * * * ***
15971750 TTGCTTATTAAATTTCTAAAT-GTTAATAAATTAGTATTATTTTATTTTGACTAAGCATGTATGA
63 CTACTTATTAAATTTTTAAATAG-TAATAAATTAGTATTATTTTATTATAAATAATTGTGTATGA
* * * * * *
15971814 ACT-GAAACAATTATTTTATGAGT-AAACAAAATGTTAGAATGATTTGAAATAGATAATTGTTCT
127 A-TAGAAACAATTGTTTTAT-AATAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTCA
* * *
15971877 AACAGTCTTAACTATTTAAACTGGATCAACAAACACATTTATTTTTTAAATCCTTACTTATTAAT
190 AATAGTCTTAACTATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATCCTTACTTATTAAT
* * * *
15971942 TTTTAGAATATTATTAACTTAGCAATATTTTACTCTGAATAAGCTTGTATGAATAGAAACAAATG
255 TTTTAGAATATTATTAACTTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAACAATTG
* *
15972007 TTTTAGGACAAAACAAAGATCATAACGATTTGAGATAGA
320 TTTTATGACAAAACAAAGATCATAACGATTTGAAATAGA
* * * * * *
15972046 TAATTGTTTAAATAGTTATAACTA-TTAAAGCTAGTTCGGTAAAGAGATTTAGTTTTTAAA-CCT
1 TAATTGTTCAAATAGTCATAACTATTTGAA-CTAGTTCGGTAAACAAATTTATTTTTTAAATCCT
* *
15972109 -CTTATTAATTTTTTAAATAGTAATAAATTATTATTATTTTATTATAAATAATTGTGTATGAATA
65 ACTTATTAAATTTTTAAATAGTAATAAATTAGTATTATTTTATTATAAATAATTGTGTATGAATA
* * * * *
15972173 GAAATAATTGTTTTATAATAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATGG
130 GAAACAATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAATAG
* * * * *
15972238 ACATGAA-TATTTGAACAGGTTCAATAAACTA-ATTAATTTTTTAAAT-CTTCAACTTATTAATT
195 TC-TTAACTATTTGAACTGGTTCAACAAAC-ACATTTATTTTTTAAATCCTT--ACTTATTAATT
* * * *
15972300 TTTAGAATGTTAATATA-TTAGTATTATTTTATTCTAAATAA----ATATGAATAGAAACAATTG
256 TTTAGAATATTATTA-ACTTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAACAATTG
* * *
15972360 TTTTATAACAAAACAAAGATCATAACAATTTGAAATAAA
320 TTTTATGACAAAACAAAGATCATAACGATTTGAAATAGA
* * *
15972399 TAATTGTTCAAACAATCATAACTATTTGAACTCACTT-GGTAAACAAATTTATTTTTTAAATCTT
1 TAATTGTTCAAATAGTCATAACTATTTGAACT-AGTTCGGTAAACAAATTTATTTTTTAAATC--
* * ** * * * **
15972463 TTACTTA-CAAATTTTGGAATATTAATTAATTAGAATTATTTTATTCCAAATAAGCTTGT-T-TG
63 CTACTTATTAAATTTTTAAATAGTAATAAATTAGTATTATTTTATTATAAATAA--TTGTGTATG
* * * *
15972525 AACAGAAACAATTGGTTTATGACAAAAC-AAATGGTCATAACGATTTGAAATAGATAATTGTTCA
126 AATAGAAACAATTGTTTTATAATAAAACAAAAT-GTCATAACGATTTGAAATAGATAATTGTTCA
* * * *
15972589 AATAGTCATAACTATTTGAAC-GTGTTCAGA-AAATAGC-TTTATTTTCTAAAAT-TTTACTTAT
190 AATAGTCTTAACTATTTGAACTG-GTTCA-ACAAACA-CATTTATTTT-TTAAATCCTTACTTAT
* * * * ** * * *
15972650 TAATTTTTGGAATAGTAATAAATTTA-TATTATTTTATTCAAAATATGCTTGCATGAATAGAACC
251 TAATTTTTAGAATA-TTATTAACTTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAAC
* *
15972714 AATTGTTTTATGACAAAAC-AAGATGTCATAATGTTTTGAAATAGA
315 AATTGTTTTATGACAAAACAAAGA--TCATAACGATTTGAAATAGA
* * * * * * *
15972759 TAATTGTTTAGATAGTCATAACTATTTCAACTTGATCGATAAGA-AAATTGATTTTTTAAAT--T
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAA-ACAAATTTATTTTTTAAATCCT
* ** ** * ** *
15972821 -C-TATT-ACTTTTT-AAT--TTTTGGA--A-TATTATTTTATCT-CAAATAGGCT-TATATGAA
65 ACTTATTAAATTTTTAAATAGTAATAAATTAGTATTATTTTAT-TATAAATA-ATTGTGTATGAA
* * * * * * * *
15972875 TTGAAACAATTATTTTATTACAAAACAAAA-GCTCATGATGATTTGAAATAGATTATTATTCAAA
128 TAGAAACAATTGTTTTATAATAAAACAAAATG-TCATAACGATTTGAAATAGATAATTGTTCAAA
* * * ** * * * *
15972939 TAGTCATGACTATTTGAACTTGTTTGACAAATAAATTTATTTTTTAAATCTTTTACTTATAAATT
192 TAGTCTTAACTATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATC-CTTACTTATTAATT
* * * * * * * * * * *
15973004 GTCAAAATTTTAATAAATTAATATTATTTTATT-TCAAATAAGCTAGTATGAACAAAAACAATTG
256 TTTAGAATATTATTAACTTAGTATTATTTTATTCT-GAATAAGCTTGTATGAATAGAAACAATTG
* * * *
15973068 TTTTATGACAAAATAAAAAGTCATAACAATTTGAAATAAA
320 TTTTATGACAAAACAAAGA-TCATAACGATTTGAAATAGA
* * * *
15973108 TAATTGTTCAAATAGTCATAA-TGATTTGAACTTGTTCAGTAAACAGATTTA-TTTTAAAATCTT
1 TAATTGTTCAAATAGTCATAACT-ATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATC--
* * * * *
15973171 TTACCTATT-AATTGTCTT-AAT-TTAATAAATTTGTATTATTTTATTCA-AAATAAGCT-TGTA
63 CTACTTATTAAATT-T-TTAAATAGTAATAAATTAGTATTATTTTATT-ATAAATAA-TTGTGTA
* * ** * * * * * * * ** *
15973231 TGAACAGAAAAAATCATGTTATGACAAAGCAAAAGGTTATAGCGATTTTCAATAAATAATTGTTC
124 TGAATAGAAACAATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTC
* * * * ** * * * *
15973296 AAATAAT-TATAATTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAATCTATTAATTATT
189 AAATAGTCT-TAACTATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATC-CTTACTTATT
* * * * * * * *
15973360 AAGTTTCAAAATATTCA-TAACTTAATATT-TTTTATTTTGAATAAGCTTATATGAATTGAAATA
252 AATTTTTAGAATATT-ATTAACTTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAACA
* * *
15973423 ATTTTTTTATGACAAAAGAAA-ATGTCATAGCGATTTGAAATAGA
316 ATTGTTTTATGACAAAACAAAGA--TCATAACGATTTGAAATAGA
* * * * * * *
15973467 TAATTATTCAAATAGTCATAACTGTTTGATCTAGTTCAGTAAACATATTTAATTTTTTACATTTT
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTT-ATTTTTTA-A-ATC
* * * * * * * * *
15973532 TTACTTATT-AATTGTTAAACTATTAATAAATTTGTATTATTTTAATCTAAATAAGCT-TGAATA
63 CTACTTATTAAATTTTTAAA-TAGTAATAAATTAGTATTATTTTATTATAAATAA-TTGTGTATG
* * * * * * ** * *
15973595 AATAGAAACCATTATCTTATAACAGAACAAAAAGTTGTAATGATTTGAAATAAATAATTGCTT-A
126 AATAGAAACAATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTG-TTCA
*** ** * * *
15973659 AATAGTCTT-A--ATTTGAACCAATTTGATAAATAGATTTATTTTTTAAAAT--TT--TTATTAA
190 AATAGTCTTAACTATTTGAACTGGTTCAACAAACACATTTATTTTTT-AAATCCTTACTTATTAA
* * * * * * * *
15973717 CTTTT-GAAATATTAATAGA-TTAGTAATATTTTATT-TCGAACAAACTTATATGAACAAAAAC-
254 TTTTTAG-AATATTATTA-ACTTAGTATTATTTTATTCT-GAATAAGCTTGTATGAATAGAAACA
* *
15973778 ATTAGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGA
316 ATT-GTTTTATGACAAAAC-AAAGATCATAACGATTTGAAATAGA
* * * *
15973823 TAATTGTTCAAATAGTCATAATTATTTGAACTGGTTAGGTAAACATAA-TTATTTTTTAATTCTC
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACA-AATTTATTTTTTAAATC-C
** * *
15973887 TTACTTATT-AATTTTTGAAATTTTAATAAATTTA-TTTTATTTTATTCTAAATAA--GCTAGTA
64 -TACTTATTAAATTTTT-AAATAGTAATAAA-TTAGTATTATTTTATTATAAATAATTG-T-GTA
* * * * * * *
15973948 TGAATTGAAA-ATATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATT
124 TGAATAGAAACA-ATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTT
* * * ** **
15974012 CATATAGTTTTAACTATTTGAACTAGTTCGGCAAACA-ATTTTATTTTTTAAATCTCTTGGTTAT
188 CAAATAGTCTTAACTATTTGAACTGGTTCAACAAACACA-TTTATTTTTTAAATC-CTTACTTAT
* * *
15974076 TAATTTTTAGAATATTATTAGA-TTAGTTTTATTTTATT-TCAAATAAGCTTGTATGAACAGAAA
251 TAATTTTTAGAATATTATTA-ACTTAGTATTATTTTATTCT-GAATAAGCTTGTATGAATAGAAA
* * * * * *
15974139 TAATTTTTTTTTTGTTTTATGACAAAACAAAAAGTTATAACAATTTGAAGTATA
314 CAA--------TTGTTTTATGACAAAACAAAGA-TCATAACGATTTGAAATAGA
* * * * * * * ** * * *
15974193 CAACTGCTCTAATAATCATAACTATTTGAATTGGTTTTGTAAATAGATTTA-TTTTTAATTCTCT
1 TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATC-C-
* *
15974257 TACTTATT-AATTTTTGAAAGATTAATAAATTAGTATTATTT
64 TACTTATTAAATTTTT-AAATAGTAATAAATTAGTATTATTT
15974298 ATTCCGAATA
Statistics
Matches: 2347, Mismatches: 457, Indels: 320
0.75 0.15 0.10
Matches are distributed among these distances:
346 1 0.00
347 9 0.00
348 120 0.05
349 126 0.05
350 4 0.00
351 82 0.03
352 170 0.07
353 106 0.05
354 31 0.01
355 197 0.08
356 368 0.16
357 78 0.03
358 41 0.02
359 165 0.07
360 225 0.10
361 84 0.04
362 249 0.11
363 152 0.06
364 10 0.00
365 3 0.00
368 3 0.00
369 51 0.02
370 70 0.03
371 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (358 bp):
TAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCCTA
CTTATTAAATTTTTAAATAGTAATAAATTAGTATTATTTTATTATAAATAATTGTGTATGAATAG
AAACAATTGTTTTATAATAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAATAGT
CTTAACTATTTGAACTGGTTCAACAAACACATTTATTTTTTAAATCCTTACTTATTAATTTTTAG
AATATTATTAACTTAGTATTATTTTATTCTGAATAAGCTTGTATGAATAGAAACAATTGTTTTAT
GACAAAACAAAGATCATAACGATTTGAAATAGA
Found at i:15972586 original size:180 final size:181
Alignment explanation
Indices: 15971331--15974444 Score: 2307
Period size: 181 Copynumber: 17.4 Consensus size: 181
15971321 AATTGAAATA
* * ** * **
15971331 CAAATAGTCATAACTATTTGAATTGGTTCAATAAACAGATTTATTTTTTAAATCTCCTACTTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * *
15971396 AATTTTTAAAATATTAATAAATTAATATTATTTTATTATGAATAAGCTAGTATG-ATGAAAAACA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAAT-AGAAACA
* * * *
15971460 ATTGTTTTATGTCAAAACAAAAGTTCATAATGATTTGAAATAGATAAATGTT
130 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * ** * *
15971512 CAAATGGCCATAA-TCATTTTAACT-GATTCGATAAACTGATTTATGTTTTAAATCTTTAACTTA
1 CAAATAGTCATAACT-ATTTGAACTAG-TTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTA
* * * * * ** * * *
15971575 TCAATTTTTGAAATATTAATAAAGTAATACTATTTTATT-TGGGACAAGCTTTTATGATCTA-AA
64 TTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGA-ATAGAA
* * * * * *
15971638 ACAATTGTTTTATGATAAAACAAAAGGTCACAATGATTTTAGATAGATAATTATT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * *
15971693 CAAATAGTTATTACTATTTGAACTTGTTCGGTAAATAAATTTATTTTTTTAAAT-TTCTTGCTTA
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTA-TTTTTTAAATCTT-TTACTTA
* * * * * *
15971757 TTAAATTTCT-AAATGTTAATAAATTAGTATTATTTTATTTTGACTAAGCATGTATGAACT-GAA
64 TT-AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAA-TAGAA
* ** * * * *
15971820 ACAATTATTTTATGAGTAAACAAAATGTTAGAATGATTTGAAATAGATAATTGTT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * * *** * *
15971875 CTAACAGTCTTAACTATTTAAACTGGATCAACAAACACATTTATTTTTTAAATC-CTTACTTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * * * *
15971939 AATTTTTAGAATATTATTAACTTAGCAATATTTTACTCTGAATAAGCTTGTATGAATAGAAACAA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAA
* * * *
15972004 ATGTTTTAGGACAAAAC-AAAGATCATAACGATTTGAGATAGATAATTGTT
131 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * * *
15972054 TAAATAGTTATAACTA-TTAAAGCTAGTTCGGTAAAGAGATTTAGTTTTTAAA-C--CT-CTTAT
1 CAAATAGTCATAACTATTTGAA-CTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
* * * * * *
15972114 TAATTTTTTAAATAGTAATAAATTATTATTATTTTATTATAAATAA-TTGTGTATGAATAGAAAT
65 TAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCT-TGTATGAATAGAAAC
* * * * * *
15972178 AATTGTTTTATAATAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTT
129 AATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * ** * * **
15972231 CAAATGGACATGAA-TATTTGAAC-AGGTTCAATAAACTAATTAATTTTTTAAATCTTCAACTTA
1 CAAATAGTCAT-AACTATTTGAACTA-GTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTA
* * * *
15972294 TTAATTTTTAGAATGTTAATATATTAGTATTATTTTATTCTAAATAA----ATATGAATAGAAAC
64 TTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAAC
* * * *
15972355 AATTGTTTTATAACAAAAC-AAAGATCATAACAATTTGAAATAAATAATTGTT
129 AATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * *
15972407 CAAACAATCATAACTATTTGAACTCACTT-GGTAAACAAATTTATTTTTTAAATCTTTTACTTA-
1 CAAATAGTCATAACTATTTGAACT-AGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
* * ** * * * * *
15972470 CAAATTTTGGAATATTAATTAATTAGAATTATTTTATTCCAAATAAGCTTGTTTGAACAGAAACA
65 TAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACA
* *
15972535 ATTGGTTTATGACAAAACAAATGGTCATAACGATTTGAAATAGATAATTGTT
130 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * ** * *
15972587 CAAATAGTCATAACTATTTGAACGT-GTTCAGAAAATAGCTTTATTTTCTAAA-ATTTTACTTAT
1 CAAATAGTCATAACTATTTGAAC-TAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
** * * * * *
15972650 TAATTTTTGGAATAGTAATAAATTTA-TATTATTTTATTCAAAATATGCTTGCATGAATAGAACC
65 TAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAAC
* * * *
15972714 AATTGTTTTATGACAAAACAAGATGTCATAATGTTTTGAAATAGATAATTGTT
129 AATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * * *
15972767 TAGATAGTCATAACTATTTCAACTTGATCGATAAGA-AAATTGATTTTTTAAA----TT-C-TAT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAA-ACAAATTTATTTTTTAAATCTTTTACTTAT
* * ** * * *
15972825 TACTTTTT--AAT-TT-TTGGA--A-TATTATTTTA-TCTCAAATAGGCTTATATGAATTGAAAC
65 TAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAATAGAAAC
* * * * * * *
15972882 AATTATTTTATTACAAAACAAAAGCTCATGATGATTTGAAATAGATTATTATT
129 AATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * ** * *
15972935 CAAATAGTCATGACTATTTGAACTTGTTTGACAAATAAATTTATTTTTTAAATCTTTTACTTATA
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * * * *
15973000 AATTGTCAAAATTTTAATAAATTAATATTATTTTATT-TCAAATAAGCTAGTATGAACAAAAACA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAATAGAAACA
* * * *
15973064 ATTGTTTTATGACAAAATAAAAAGTCATAACAATTTGAAATAAATAATTGTT
130 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * *
15973116 CAAATAGTCATAA-TGATTTGAACTTGTTCAGTAAACAGATTTA-TTTTAAAATCTTTTACCTAT
1 CAAATAGTCATAACT-ATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
* * *
15973179 TAATTGTCTT--AAT-TTAATAAATTTGTATTATTTTATTCAAAATAAGCTTGTATGAACAGAAA
65 TAATT-T-TTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAA
* ** * * * * ** *
15973241 AAATCATGTTATGACAAAGCAAAAGGTTATAGCGATTTTCAATAAATAATTGTT
128 CAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * * * * * *
15973295 CAAATAATTATAATTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAATCTATTAATTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * * * * * * *
15973360 AAGTTTCAAAATATTCATAACTTAATATT-TTTTATTTTGAATAAGCTTATATGAATTGAAATAA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAA
* * * * *
15973424 TTTTTTTATGACAAAAGAAAATGTCATAGCGATTTGAAATAGATAATTATT
131 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * *
15973475 CAAATAGTCATAACTGTTTGATCTAGTTCAGTAAACATATTTAATTTTTTACATTTTTTACTTAT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTT-ATTTTTTAAATCTTTTACTTAT
* * * * * * *
15973540 TAATTGTTAAACTATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGAATAAATAGAAACC
65 TAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACA
* * * * * ** * *
15973605 ATTATCTTATAACAGAACAAAAAGTTGTAATGATTTGAAATAAATAATTGCTT
130 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTG-TT
* * * * * * * *
15973658 -AAATAGTC-TTA--ATTTGAACCAATTTGATAAATAGATTTATTTTTTAAA--ATTT--TTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * * * * *
15973715 AACTTTTGAAATATTAATAGATTAGTAATATTTTATTTCGAACA-AA-CTTATATGAACAAAAAC
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTA-TTCTAA-ATAAGCTTGTATGAATAGAAAC
*
15973778 -ATTAGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTT
129 AATT-GTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * *
15973831 CAAATAGTCATAATTATTTGAACTGGTTAGGTAAACATAA-TTATTTTTTAATTCTCTTACTTAT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACA-AATTTATTTTTTAAATCTTTTACTTAT
* * * * *
15973895 TAATTTTTGAAATTTTAATAAATTTA-TTTTATTTTATTCTAAATAAGCTAGTATGAATTGAAA-
65 TAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAAC
* * *
15973958 ATATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATT
129 A-ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* ** * * * **
15974012 CATATAGTTTTAACTATTTGAACTAGTTCGGCAAACAATTTTATTTTTTAAATCTCTTGGTTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * * *
15974077 AATTTTTAGAATATTATTAGATTAGTTTTATTTTATT-TCAAATAAGCTTGTATGAACAGAAATA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAATAGAAACA
* * * * * * * *
15974141 ATTTTTTTTTTGTTTTATGACAAAACAAAAAGTTATAACAATTTGAAGTATACAACTGCT
130 A--------TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * ** * * * *
15974201 CTAATAATCATAACTATTTGAATTGGTTTTGTAAATAGATTTA-TTTTTAATTCTCTTACTTATT
1 CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * ** * *
15974265 AATTTTTGAAAGATTAATAAATTAGTATTA-TTTATTCCGAATAAGCTTGTATG-GTGAAAAACA
66 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAAT-AGAAACA
** * * * * ** ** *
15974328 ATTGTCATATGACCAAACCAAAGGTAAGAATAATTCAAAATAGATAATTATT
130 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
* * * * * * * * * **
15974380 GAAATGGCCATAATTATTTGAA-TTGATTTGGTAAACATATTCACTTTTTAAATCACTTACTTAT
1 CAAATAGTCATAACTATTTGAACTAG-TTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
15974444 T
65 T
15974445 TGAATTTGTT
Statistics
Matches: 2302, Mismatches: 530, Indels: 203
0.76 0.17 0.07
Matches are distributed among these distances:
167 3 0.00
168 116 0.05
171 2 0.00
172 3 0.00
173 9 0.00
174 97 0.04
175 59 0.03
176 150 0.07
177 121 0.05
178 29 0.01
179 315 0.14
180 452 0.20
181 583 0.25
182 213 0.09
183 10 0.00
187 26 0.01
188 42 0.02
189 72 0.03
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (181 bp):
CAAATAGTCATAACTATTTGAACTAGTTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
AATTTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAA
TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT
Found at i:15972953 original size:168 final size:167
Alignment explanation
Indices: 15972497--15972996 Score: 402
Period size: 168 Copynumber: 2.9 Consensus size: 167
15972487 ATTAATTAGA
* * *** * ** *
15972497 ATTATTTTATTCCAAATAAGCTTGTTTGAACAGAAACAATTGGTTTATGACAAAACAA-ATGGTC
1 ATTATTTTATTCAAAATAGGCTTACATGAATAGAAACAATTATTTTATGACAAAACAAGA-AGTC
* * * * * *
15972561 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACGTGTTCAGA-AAATAG
65 ATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATC-GACAAATAA
* * * *
15972625 CTTTATTTTCTAAAAT-T-TTACTTATTAATTTTTGGAATAGTAATAAATTTAT
129 ATTGATTTT-TTAAATCTATTACTTTTTAATTTTT-G----G------A---AT
* * * * *
15972677 ATTATTTTATTCAAAATATGCTTGCATGAATAGAACCAATTGTTTTATGACAAAACAAGATGTCA
1 ATTATTTTATTCAAAATAGGCTTACATGAATAGAAACAATTATTTTATGACAAAACAAGAAGTCA
* * * * *
15972742 TAATGTTTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTCAACTTGATCGATAAGA-AAA
66 TAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCGACAA-ATAAA
15972806 TTGATTTTTTAAATTCTATTACTTTTTAATTTTTGGAAT
130 TTGATTTTTTAAA-TCTATTACTTTTTAATTTTTGGAAT
* * *
15972845 ATTATTTTATCTC-AAATAGGCTTATATGAATTGAAACAATTATTTTATTACAAAACAA-AAGCT
1 ATTATTTTAT-TCAAAATAGGCTTACATGAATAGAAACAATTATTTTATGACAAAACAAGAAG-T
* * * * * *
15972908 CATGATGATTTGAAATAGATTATTATTCAAATAGTCATGACTATTTGAACTTGTTTGACAAATAA
64 CATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCGACAAATAA
* *
15972973 ATTTATTTTTTAAATCTTTTACTT
129 ATTGATTTTTTAAATCTATTACTT
15972997 ATAAATTGTC
Statistics
Matches: 270, Mismatches: 41, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
167 12 0.04
168 116 0.43
169 2 0.01
171 1 0.00
177 1 0.00
179 6 0.02
180 113 0.42
181 4 0.01
182 15 0.06
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.41
Consensus pattern (167 bp):
ATTATTTTATTCAAAATAGGCTTACATGAATAGAAACAATTATTTTATGACAAAACAAGAAGTCA
TAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCGACAAATAAAT
TGATTTTTTAAATCTATTACTTTTTAATTTTTGGAAT
Found at i:15975665 original size:180 final size:178
Alignment explanation
Indices: 15975388--15976347 Score: 732
Period size: 180 Copynumber: 5.4 Consensus size: 178
15975378 AATTTAGTAT
* * * * * * ***
15975388 GATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAGTAT-GGTAAATTTATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTA-T-TCAGTAAACAAATTTA
* * * * *
15975452 TTTATTAAATCT-T--TTATTAAATTTTGA-AATATTAATAAATTAATATTATTTTATTTCGAAC
64 TTTTTTAAATCTCTAATTATTAAA-TTTCATAATATTAATAAATTAGTATTATTTTATTTCAAAT
* *
15975513 AAACTTATATGAAAAAAACATTTATTTTATGACAAAACAAAAGGTCATAAC
128 AAGCTTATATGAAAAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * *
15975564 GATTTGAAATAGATAATTATTCATATAG-CTTTAACTATTTGAATTGGTTCAGTAAACAAATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTC-ATAACTATTTGAACT-ATTCAGTAAACAAATTTA
* * *
15975628 TTTTTTAAATCTATCAATTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTCAAAT
64 TTTTTTAAATCTCT-AATTATTAAATTTCATAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * * *
15975693 AAGCTTGTATGAAGATAAATAATTGTTTTATGACAAAACAAAAGGTTATAAC
128 AAGCTTATATGAA-AAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * *
15975745 AATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATT-TGATAAACAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-ATTCAG-TAAACAAATTTA
* * *
15975809 TTTTTTAAATCTCTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTAT-GA
64 TTTTTTAAATCTC-TAATTATTAA-ATTTCATAATATTAATAAATTAGTATTATTTTATT-TCAA
* * * * * * *
15975872 ATAGGCCTGTATGATGAAAAA-AATTGTTTTATGACAAAACAAAAGTTCATAAT
126 ATAAGCTTATATGA-AAAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * *
15975925 GATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTG-A--ATT--G-------ATTTATG
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATTCAGTAAACAAATTTATT
* * * * * **
15975978 TTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAGGTAA
66 TTTTAAATCTCTAA-TTATTAAATTTCATAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * *
15976043 GCTTTTAT-AAACTAAAACAATTATTTTATGATAAAATATAAA-GTCATAAT
130 GCTTATATGAAA--AAAACAATTATTTTATGACAAAACA-AAAGGTCATAAC
* * * * *
15976093 GATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTGTTCAGTAAATAAATTT-T
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TATTCAGTAAACAAATTTAT
* * * * * *
15976157 TTTTCT-AATGTCTTACTTAAT-AATTTTATGAATGTTAATAAATTAGTATGATTTTATTTCAAA
65 TTTT-TAAATCTC-TAATTATTAAATTTCAT-AATATTAATAAATTAGTATTATTTTATTTCAAA
* * *** ** * * *
15976220 TAAGCATGTATGAGTTGAAGTAATTATTTTATGACTAAATAAAAGGTCAAAAC
127 TAAGCTTATATGA-AAAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * * * *
15976273 GATTTAAAATAGGTAATTATTCTAATAGTCTTAACTATTTGAACTAATTCAGCAAACACATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-ATTCAGTAAACAAATTTAT
15976338 TTTTTAAATC
65 TTTTTAAATC
15976348 CTTATTAATG
Statistics
Matches: 623, Mismatches: 117, Indels: 83
0.76 0.14 0.10
Matches are distributed among these distances:
165 1 0.00
166 9 0.01
167 61 0.10
168 59 0.09
169 4 0.01
172 2 0.00
174 1 0.00
175 2 0.00
176 60 0.10
177 1 0.00
179 16 0.03
180 237 0.38
181 162 0.26
182 8 0.01
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (178 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATTCAGTAAACAAATTTATT
TTTTAAATCTCTAATTATTAAATTTCATAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CTTATATGAAAAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
Found at i:15976314 original size:348 final size:348
Alignment explanation
Indices: 15975447--15976315 Score: 761
Period size: 348 Copynumber: 2.5 Consensus size: 348
15975437 TGGTAAATTT
* * * * *
15975447 ATTTATTTATTAAATCTTTTA-TT-A-AA-TTTTGAAATATTAATAAATTAATATTATTTTATT-
1 ATTTATTTTTTAAATCTCTTACTTAATAATTTTTCAAATATTAATAAATTAGTATGATTTTATTA
* * * *
15975507 TCGAACAAAC-T-TAT-ATGAAAAAAACATTTATTTTATGACAAAACAAAAGGTCATAACGATTT
66 T-AAATAAGCATGTATGATG-AAAAAA-A-TTATTTTATGACAAAACAAAAGGTCAAAACGATTT
* * * ** *
15975569 GAAATAGATAATTATTCATATAGCTTTAACTATTTGAATTGGTTCAGTAAACAAATTTATTTTTT
127 AAAATAGATAATTATTTAAATAGCCATAACTATTTGAA----TT--G-------ATTTATGTTTT
* * * * *
15975634 AAATCTATCAATTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTCAAATAAGCTT
179 AAATCTATCAATTATCAAATTTCATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTT
* * * *
15975699 GTATGAAGATAAATAATTGTTTTATGACAAAACAAAAGGTTATAACAATTGGAAATATATAATTG
244 GTATGAAGATAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTGGAAATAGATAATTG
* * * *
15975764 TTCAAATAGTCATAACTATTTGAACTGATTTGATAAACAG
309 TTCAAATAGTCAAAAATATTTGAACTGATTAGATAAACAA
* *
15975804 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTA
1 ATTTATTTTTTAAATCTCTTACTTAATAATTTTTCAAATATTAATAAATTAGTATGATTTTATTA
* * * * * * * *
15975869 TGAATAGGCCTGTATGATGAAAAAAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAA
66 TAAATAAGCATGTATGATGAAAAAAATTATTTTATGACAAAACAAAAGGTCAAAACGATTTAAAA
* * * *
15975934 TAGATAATTGTTTAAATGGCCATAATTATTTGAATTGATTTATGTTTTAAATCTCT-AACTTATC
131 TAGATAATTATTTAAATAGCCATAACTATTTGAATTGATTTATGTTTTAAATCTATCAA-TTATC
* * ** *
15975998 AATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAGGTAAGCTTTTAT-AA-ACTAAAAC
195 AAATTTCATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTGTATGAAGA-T-AAAC
* * ** **
15976061 AATTATTTTATGATAAAATATAAA-GTCATAATGATTTTAAATAGATAATTGTTCAAATAGTCAA
258 AATTATTTTATGACAAAACA-AAAGGTCATAACAATTGGAAATAGATAATTGTTCAAATAGTCAA
*
15976125 AAATATTTGAACTTG-TTCAG-TAAATAA
322 AAATATTTGAAC-TGATT-AGATAAACAA
* * *
15976152 ATTT-TTTTTCT-AATGTCTTACTTAATAATTTTAT-GAATGTTAATAAATTAGTATGATTTTAT
1 ATTTATTTTT-TAAATCTCTTACTTAATAATTTT-TCAAATATTAATAAATTAGTATGATTTTAT
** * *
15976214 T-TCAAATAAGCATGTATGAGTTG-AAGTAATTATTTTATGACTAAATAAAAGGTCAAAACGATT
64 TAT-AAATAAGCATGTATGA--TGAAAAAAATTATTTTATGACAAAACAAAAGGTCAAAACGATT
* * *
15976277 TAAAATAGGTAATTATTCT-AATAGTCTTAACTATTTGAA
126 TAAAATAGATAATTATT-TAAATAGCCATAACTATTTGAA
15976316 CTAATTCAGC
Statistics
Matches: 424, Mismatches: 68, Indels: 49
0.78 0.13 0.09
Matches are distributed among these distances:
346 2 0.00
347 68 0.16
348 204 0.48
349 9 0.02
355 1 0.00
357 21 0.05
358 2 0.00
360 2 0.00
361 100 0.24
362 3 0.01
363 9 0.02
364 3 0.01
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (348 bp):
ATTTATTTTTTAAATCTCTTACTTAATAATTTTTCAAATATTAATAAATTAGTATGATTTTATTA
TAAATAAGCATGTATGATGAAAAAAATTATTTTATGACAAAACAAAAGGTCAAAACGATTTAAAA
TAGATAATTATTTAAATAGCCATAACTATTTGAATTGATTTATGTTTTAAATCTATCAATTATCA
AATTTCATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTGTATGAAGATAAACAAT
TATTTTATGACAAAACAAAAGGTCATAACAATTGGAAATAGATAATTGTTCAAATAGTCAAAAAT
ATTTGAACTGATTAGATAAACAA
Found at i:15976505 original size:22 final size:20
Alignment explanation
Indices: 15976470--15976515 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
15976460 TATTATAATT
*
15976470 TAATTATAATTATTCAATTTTA
1 TAATTATAA-TATT-AATTATA
15976492 TAATTAATAATATTAATTATA
1 TAATT-ATAATATTAATTATA
15976513 TAA
1 TAA
15976516 ATTTATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 9 0.41
23 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTATAATATTAATTATA
Found at i:15976518 original size:22 final size:21
Alignment explanation
Indices: 15976470--15976524 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
15976460 TATTATAATT
*
15976470 TAATTATAATTATTCAATTTTA
1 TAATTATAA-TATTCAATTATA
15976492 TAATTAATAATATT-AATTATA
1 TAATT-ATAATATTCAATTATA
15976513 TAAATTTATAAT
1 T-AA-TTATAAT
15976525 TTAGTACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 7 0.24
22 16 0.55
23 6 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTATAATATTCAATTATA
Found at i:15976618 original size:10 final size:10
Alignment explanation
Indices: 15976588--15976685 Score: 62
Period size: 10 Copynumber: 9.6 Consensus size: 10
15976578 ATTTGAAAAT
15976588 TATAATTATA
1 TATAATTATA
*
15976598 CATAATTATA
1 TATAATTATA
15976608 TATAATTATA
1 TATAATTATA
*
15976618 TATGA-TATA
1 TATAATTATA
15976627 CT-TAATTAGATTA
1 -TATAATT--A-TA
15976640 TACTAATT-TAA
1 TA-TAATTAT-A
*
15976651 TATAGATTAAA
1 TATA-ATTATA
15976662 TATAATTAT-
1 TATAATTATA
*
15976671 TAT-ATTTTA
1 TATAATTATA
15976680 TATAAT
1 TATAAT
15976686 GTAATAATAA
Statistics
Matches: 69, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.06
9 12 0.17
10 33 0.48
11 11 0.16
12 2 0.03
13 2 0.03
14 5 0.07
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (10 bp):
TATAATTATA
Found at i:15977257 original size:22 final size:21
Alignment explanation
Indices: 15977228--15977270 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
15977218 ATATGCTAAC
15977228 AATTTATA-TATAATATAATAT
1 AATTTATATTATAAT-TAATAT
15977249 AATTCTATATTATAATTAATAT
1 AATT-TATATTATAATTAATAT
15977271 TTACTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 10 0.50
23 6 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTTATATTATAATTAATAT
Found at i:15977284 original size:6 final size:6
Alignment explanation
Indices: 15977263--15977317 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
15977253 CTATATTATA
*
15977263 ATTAAT ATT--T ACTTAAT ATTAAT AATAAAT ATTAAT ATTAAT AATTAAT
1 ATTAAT ATTAAT A-TTAAT ATTAAT -ATTAAT ATTAAT ATTAAT -ATTAAT
*
15977312 TTTAAT
1 ATTAAT
15977318 TAATTTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 24 0.59
7 13 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (6 bp):
ATTAAT
Found at i:15977299 original size:19 final size:19
Alignment explanation
Indices: 15977275--15977317 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
15977265 TAATATTTAC
15977275 TTAATATTAATAATAAATA
1 TTAATATTAATAATAAATA
* *
15977294 TTAATATTAATAATTAATT
1 TTAATATTAATAATAAATA
15977313 TTAAT
1 TTAAT
15977318 TAATTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATATTAATAATAAATA
Found at i:15977309 original size:13 final size:13
Alignment explanation
Indices: 15977255--15977311 Score: 59
Period size: 13 Copynumber: 4.6 Consensus size: 13
15977245 ATATAATTCT
15977255 ATATT-ATAATTA
1 ATATTAATAATTA
*
15977267 ATATT--TACTTA
1 ATATTAATAATTA
*
15977278 ATATTAATAATAA
1 ATATTAATAATTA
15977291 ATATTAAT-ATTA
1 ATATTAATAATTA
15977303 ATAATTAAT
1 AT-ATTAAT
15977312 TTTAATTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
11 10 0.26
12 10 0.26
13 18 0.47
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTAATAATTA
Found at i:15977386 original size:18 final size:19
Alignment explanation
Indices: 15977349--15977386 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15977339 TAATTTATTT
*
15977349 AAATAAATTAATTATTAAA
1 AAATAAATTAATTATAAAA
*
15977368 AAATAATTTAA-TATAAAA
1 AAATAAATTAATTATAAAA
15977386 A
1 A
15977387 TTATATATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAAATTAATTATAAAA
Found at i:15977415 original size:16 final size:16
Alignment explanation
Indices: 15977368--15977419 Score: 60
Period size: 14 Copynumber: 3.6 Consensus size: 16
15977358 AATTATTAAA
*
15977368 AAATAATT-TA-ATAT
1 AAATAATTATATATTT
15977382 AAA-AATTATATA-TT
1 AAATAATTATATATTT
15977396 -AATAATTATATATTT
1 AAATAATTATATATTT
15977411 AAATAATTA
1 AAATAATTA
15977420 ATAAAACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 6 0.19
14 15 0.47
15 3 0.09
16 8 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATAATTATATATTT
Found at i:15977591 original size:18 final size:17
Alignment explanation
Indices: 15977555--15977593 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15977545 TACAATTATA
*
15977555 ATATATATTATAATGTT
1 ATATATATAATAATGTT
*
15977572 ATATATTATAATAATTTT
1 ATATA-TATAATAATGTT
15977590 ATAT
1 ATAT
15977594 TATGTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATATATAATAATGTT
Found at i:15978153 original size:32 final size:33
Alignment explanation
Indices: 15978117--15978204 Score: 92
Period size: 32 Copynumber: 2.6 Consensus size: 33
15978107 ATAGTGTTAA
15978117 ATATATTTTAAATAATATATA-AATTTTAAAAT
1 ATATATTTTAAATAATATATATAATTTTAAAAT
* *
15978149 ATATATTATTATATAA-AT-TATAATTTTAAATT
1 ATATATT-TTAAATAATATATATAATTTTAAAAT
*
15978181 ATATAATATTAAAATGAATATATA
1 ATAT-AT-TTTAAAT-AATATATA
15978205 CTTATTAATC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
31 2 0.04
32 23 0.51
33 13 0.29
34 3 0.07
35 2 0.04
36 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (33 bp):
ATATATTTTAAATAATATATATAATTTTAAAAT
Found at i:15978999 original size:15 final size:14
Alignment explanation
Indices: 15978981--15979021 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
15978971 TTAATTTATA
15978981 ATTAATCATTATAAT
1 ATTAAT-ATTATAAT
15978996 ATTAA-ATTAT-AT
1 ATTAATATTATAAT
*
15979008 ATTATTATTATAAT
1 ATTAATATTATAAT
15979022 CAATTATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
12 6 0.26
13 10 0.43
14 2 0.09
15 5 0.22
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTAATATTATAAT
Found at i:15979005 original size:26 final size:26
Alignment explanation
Indices: 15978971--15979021 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15978961 ATAGTATTAT
*
15978971 TTAATTTATA-ATTAATCATTATAATA
1 TTAAATTATATATT-ATCATTATAATA
*
15978997 TTAAATTATATATTATTATTATAAT
1 TTAAATTATATATTATCATTATAAT
15979022 CAATTATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAAATTATATATTATCATTATAATA
Found at i:15980202 original size:20 final size:21
Alignment explanation
Indices: 15980163--15980212 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
15980153 ATTAGTTTAA
15980163 TTATATAATAAAATACTTGTT
1 TTATATAATAAAATACTTGTT
* *
15980184 TTATA-AATCAAATATTTG-T
1 TTATATAATAAAATACTTGTT
*
15980203 TAATATAATA
1 TTATATAATA
15980213 GTAAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.21
20 14 0.58
21 5 0.21
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (21 bp):
TTATATAATAAAATACTTGTT
Found at i:15980223 original size:16 final size:16
Alignment explanation
Indices: 15980202--15980234 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15980192 CAAATATTTG
15980202 TTAATA-TAATAGTAAA
1 TTAATATTAA-AGTAAA
15980218 TTAATATTAAAGTAAA
1 TTAATATTAAAGTAAA
15980234 T
1 T
15980235 AATTAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
TTAATATTAAAGTAAA
Found at i:15980387 original size:18 final size:19
Alignment explanation
Indices: 15980362--15980421 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 19
15980352 AATAGTCATA
15980362 AATT-ATATTAT-ATAAAT
1 AATTAATATTATAATAAAT
15980379 AATTAATA-TATAATAAAT
1 AATTAATATTATAATAAAT
15980397 -ATTATATATTTATTAATATAAT
1 AATTA-ATA-TTA-TAATA-AAT
15980419 AAT
1 AAT
15980422 ACTAAATGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
17 11 0.31
18 12 0.34
20 2 0.06
21 5 0.14
22 3 0.09
23 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTAATATTATAATAAAT
Found at i:15980398 original size:29 final size:29
Alignment explanation
Indices: 15980366--15980422 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
15980356 GTCATAAATT
15980366 ATATTATATAAATAATTAATAT-ATAATAA
1 ATATTATAT-AATAATTAATATAATAATAA
* *
15980395 ATATTATATATTTATTAATATAATAATA
1 ATATTATATAATAATTAATATAATAATA
15980423 CTAAATGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
ATATTATATAATAATTAATATAATAATAA
Found at i:15980842 original size:14 final size:13
Alignment explanation
Indices: 15980808--15980842 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
15980798 ATATCCAAAT
15980808 AATATTTATATTA
1 AATATTTATATTA
15980821 AATATTTATATTA
1 AATATTTATATTA
15980834 AATTATTTA
1 AA-TATTTA
15980843 AATTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AATATTTATATTA
Found at i:15982842 original size:22 final size:23
Alignment explanation
Indices: 15982803--15982845 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
15982793 TAATCATTAT
15982803 AATTAATTAATCATTTAAATAGA
1 AATTAATTAATCATTTAAATAGA
15982826 AATT-ATTATATCA-TTAAATA
1 AATTAATTA-ATCATTTAAATA
15982846 TANNNNNNNN
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (23 bp):
AATTAATTAATCATTTAAATAGA
Found at i:15984454 original size:19 final size:20
Alignment explanation
Indices: 15984432--15984476 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
15984422 TAACTTAATG
15984432 ATTATTAAGTTAATA-ATAA
1 ATTATTAAGTTAATATATAA
*
15984451 ATTA-TAATTTAATATATAA
1 ATTATTAAGTTAATATATAA
*
15984470 ATAATTA
1 ATTATTA
15984477 CAAACATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 9 0.41
19 11 0.50
20 2 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTATTAAGTTAATATATAA
Found at i:15984581 original size:14 final size:14
Alignment explanation
Indices: 15984500--15984581 Score: 53
Period size: 14 Copynumber: 5.8 Consensus size: 14
15984490 AATAATTTAA
15984500 TAATATTAATT-AAT
1 TAATATT-ATTAAAT
* *
15984514 TAATATGAATTATAT
1 TAATAT-TATTAAAT
* *
15984529 TAAAATTATAACAAT
1 TAATATTATTA-AAT
* *
15984544 T-ATATAACTAAAT
1 TAATATTATTAAAT
15984557 T-ATATTAATTAAAT
1 TAATATT-ATTAAAT
15984571 TAATATTATTA
1 TAATATTATTA
15984582 TATTTTAACT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
13 8 0.16
14 28 0.55
15 15 0.29
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (14 bp):
TAATATTATTAAAT
Found at i:15984682 original size:23 final size:24
Alignment explanation
Indices: 15984640--15984684 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
15984630 ATTGAGTTGA
* *
15984640 AAATAATTACTATTAGTATATACT
1 AAATAATTAATATTAATATATACT
15984664 AAATAA-TAATATTAATATATA
1 AAATAATTAATATTAATATATA
15984685 ATTTAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
AAATAATTAATATTAATATATACT
Found at i:15984696 original size:11 final size:12
Alignment explanation
Indices: 15984663--15984718 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
15984653 TAGTATATAC
15984663 TAAATAATAATAT
1 TAAAT-ATAATAT
15984676 TAATATATAAT-T
1 TAA-ATATAATAT
*
15984688 TAAATATAATAC
1 TAAATATAATAT
15984700 TATAAT-TAATAT
1 TA-AATATAATAT
15984712 T-AATATA
1 TAAATATA
15984719 GTTAAAATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
10 3 0.08
11 9 0.24
12 12 0.32
13 11 0.30
14 2 0.05
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TAAATATAATAT
Found at i:15984708 original size:18 final size:19
Alignment explanation
Indices: 15984671--15984718 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
15984661 ACTAAATAAT
15984671 AATATTAATATATAATTTA
1 AATATTAATATATAATTTA
15984690 AATA-TAATACTATAA-TT-
1 AATATTAATA-TATAATTTA
15984707 AATATTAATATA
1 AATATTAATATA
15984719 GTTAAAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 6 0.22
18 12 0.44
19 9 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATTAATATATAATTTA
Found at i:15984819 original size:13 final size:13
Alignment explanation
Indices: 15984801--15984841 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
15984791 ATATTTATAA
15984801 ATTATACTAATAT
1 ATTATACTAATAT
15984814 ATTATACT-ATAT
1 ATTATACTAATAT
15984826 AATTATA-TAATAT
1 -ATTATACTAATAT
15984839 ATT
1 ATT
15984842 TATTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 8 0.31
13 18 0.69
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTATACTAATAT
Found at i:15984844 original size:13 final size:13
Alignment explanation
Indices: 15984802--15984865 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
15984792 TATTTATAAA
15984802 TTATACTAATATA-
1 TTATA-TAATATAT
*
15984815 TTATACT-ATATAA
1 TTATA-TAATATAT
15984828 TTATATAATATAT
1 TTATATAATATAT
*
15984841 TTAT-TATTTATTAT
1 TTATATA-ATA-TAT
15984855 TTATATAATAT
1 TTATATAATAT
15984866 TAATAACTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
12 8 0.19
13 24 0.56
14 9 0.21
15 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (13 bp):
TTATATAATATAT
Found at i:15984851 original size:20 final size:21
Alignment explanation
Indices: 15984791--15984851 Score: 52
Period size: 25 Copynumber: 2.7 Consensus size: 21
15984781 TAATTATATC
* *
15984791 ATATTTATAAATTATACTAAT
1 ATATTTATTATTTATACTAAT
15984812 ATATTATACTATATAATTATA-TAAT
1 ATATT-TA-T-TAT--TTATACTAAT
15984837 ATATTTATTATTTAT
1 ATATTTATTATTTAT
15984852 TATTTATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
20 4 0.12
21 5 0.15
22 5 0.15
23 2 0.06
24 3 0.09
25 9 0.27
26 5 0.15
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATTTATTATTTATACTAAT
Found at i:15984860 original size:35 final size:35
Alignment explanation
Indices: 15984821--15984927 Score: 89
Period size: 35 Copynumber: 3.0 Consensus size: 35
15984811 TATATTATAC
15984821 TATATAATTATATAATATATTTATTATTTATTATT
1 TATATAATTATATAATATATTTATTATTTATTATT
*
15984856 TATATAA-TAT-TAATA-ACTATTATATATTTAAGTTACT
1 TATATAATTATATAATATA-T-TTAT-TATTT-A-TTATT
* *
15984893 TATGATTATTATAT-TTAT-TTTAATTATTTATTATT
1 TAT-ATAATTATATAATATATTT-ATTATTTATTATT
15984928 ATTTTAATGA
Statistics
Matches: 58, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
32 1 0.02
33 6 0.10
34 7 0.12
35 16 0.28
36 2 0.03
37 14 0.24
38 6 0.10
39 5 0.09
40 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (35 bp):
TATATAATTATATAATATATTTATTATTTATTATT
Found at i:15984911 original size:28 final size:26
Alignment explanation
Indices: 15984873--15984930 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
15984863 TATTAATAAC
15984873 TATTATATA-TTTAAGTTACTTATGAT
1 TATTATATATTTTAA-TTACTTATGAT
* *
15984899 TATTATATTTATTTTAATTATTTATTAT
1 TATTATA--TATTTTAATTACTTATGAT
15984927 TATT
1 TATT
15984931 TTAATGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 7 0.26
28 15 0.56
29 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (26 bp):
TATTATATATTTTAATTACTTATGAT
Found at i:15984940 original size:28 final size:29
Alignment explanation
Indices: 15984882--15984940 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 29
15984872 CTATTATATA
* *
15984882 TTTAAGTTACTTATGATTATTATATTTAT
1 TTTAAGTTACTTATGATTATTATAATGAT
* * *
15984911 TTTAA-TTATTTATTATTATTTTAATGAT
1 TTTAAGTTACTTATGATTATTATAATGAT
15984939 TT
1 TT
15984941 GAAATAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (29 bp):
TTTAAGTTACTTATGATTATTATAATGAT
Found at i:15985180 original size:24 final size:24
Alignment explanation
Indices: 15985153--15985201 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
15985143 TTTGAATGTG
15985153 TTATAAATAATATATTA-TA-AATTA
1 TTAT-AATAATA-ATTATTACAATTA
15985177 TTATAATAATAATTATTACAATTA
1 TTATAATAATAATTATTACAATTA
15985201 T
1 T
15985202 CTTAGTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.17
23 9 0.39
24 10 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATAATAATAATTATTACAATTA
Found at i:15985471 original size:13 final size:13
Alignment explanation
Indices: 15985430--15985503 Score: 50
Period size: 13 Copynumber: 5.8 Consensus size: 13
15985420 TATAACCTTT
15985430 TATTA-ATTAAT-
1 TATTATATTAATA
* *
15985441 TATTCAAATTAACA
1 TATT-ATATTAATA
15985455 -ATTATATTAATA
1 TATTATATTAATA
15985467 TATTATAATT-ATAA
1 TATTAT-ATTAAT-A
*
15985481 TATAATATTAAATA
1 TATTATATT-AATA
15985495 TATTA-ATTA
1 TATTATATTA
15985504 TAATTTATCA
Statistics
Matches: 50, Mismatches: 5, Indels: 15
0.71 0.07 0.21
Matches are distributed among these distances:
11 4 0.08
12 9 0.18
13 21 0.42
14 14 0.28
15 2 0.04
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTATATTAATA
Found at i:15985478 original size:19 final size:19
Alignment explanation
Indices: 15985454--15985501 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
15985444 TCAAATTAAC
15985454 AATTATATTAAT-ATATTA
1 AATTATATTAATAATATTA
*
15985472 TAATTATAAT-ATAATATTA
1 -AATTATATTAATAATATTA
15985491 AA-TATATTAAT
1 AATTATATTAAT
15985502 TATAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 5 0.20
18 6 0.24
19 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTATATTAATAATATTA
Found at i:15985620 original size:22 final size:22
Alignment explanation
Indices: 15985567--15985632 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
15985557 ATTTAAGTTA
*
15985567 ATTAATTAATTTATATTAT--T
1 ATTAATTAATATATATTATAAT
*
15985587 ATAAAGTATAATATATATTATAAT
1 ATTAA-T-TAATATATATTATAAT
15985611 ATTAATTAATA-ATTATTATAAT
1 ATTAATTAATATA-TATTATAAT
15985633 CTTTAAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 4 0.11
21 2 0.05
22 26 0.68
23 1 0.03
24 5 0.13
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTAATTAATATATATTATAAT
Found at i:15985767 original size:11 final size:13
Alignment explanation
Indices: 15985747--15985962 Score: 78
Period size: 13 Copynumber: 16.4 Consensus size: 13
15985737 AATCATAACT
15985747 ATTATTATAATTA
1 ATTATTATAATTA
*
15985760 A-T-TTATAAATA
1 ATTATTATAATTA
15985771 ATTATTATAATT-
1 ATTATTATAATTA
15985783 ATTATTAATATATTTA
1 ATTATT-ATA-A-TTA
*
15985799 ATATATTAT--TTG
1 AT-TATTATAATTA
* * *
15985811 ATAAATATAATTT
1 ATTATTATAATTA
*
15985824 ATTATTAT-ATTT
1 ATTATTATAATTA
*
15985836 ATTAATATTAA-TA
1 ATTATTA-TAATTA
**
15985849 AAAATATATTAATGCTA
1 ATTAT-TA-TAAT--TA
15985866 ATTTATTATAATTA
1 A-TTATTATAATTA
15985880 ATTAATTATAA-TA
1 ATT-ATTATAATTA
*
15985893 ATTA-T-TAATTT
1 ATTATTATAATTA
*
15985904 ATAATTATAAATTA
1 ATTATTAT-AATTA
*
15985918 ATT-TT-TATTTA
1 ATTATTATAATTA
*
15985929 ATAATTATATATTAA
1 ATTATTATA-ATT-A
* *
15985944 ATATAATATATTTA
1 AT-TATTATAATTA
15985958 ATTAT
1 ATTAT
15985963 AATATTATAT
Statistics
Matches: 151, Mismatches: 26, Indels: 52
0.66 0.11 0.23
Matches are distributed among these distances:
10 3 0.02
11 24 0.16
12 27 0.18
13 37 0.25
14 29 0.19
15 7 0.05
16 13 0.09
17 9 0.06
18 2 0.01
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (13 bp):
ATTATTATAATTA
Found at i:15985782 original size:9 final size:10
Alignment explanation
Indices: 15985768--15985807 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
15985758 TAATTTATAA
15985768 ATAAT-TATT
1 ATAATATATT
15985777 ATAAT-TATT
1 ATAATATATT
15985786 ATTAATATATT
1 A-TAATATATT
15985797 -TAATATATT
1 ATAATATATT
15985806 AT
1 AT
15985808 TTGATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 19 0.68
10 5 0.18
11 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
ATAATATATT
Found at i:15985796 original size:20 final size:20
Alignment explanation
Indices: 15985749--15985980 Score: 68
Period size: 20 Copynumber: 11.7 Consensus size: 20
15985739 TCATAACTAT
*
15985749 TATTATAATTAATTTATAAATAA
1 TATTATAATT-A-TTATTAAT-A
15985772 TTATTATAATTATTATTAATA
1 -TATTATAATTATTATTAATA
*
15985793 TATT-TAATATATTATTTGATA
1 TATTATAAT-TATTA-TTAATA
*
15985814 -AATATAATTTATTATT-ATA
1 TATTATAA-TTATTATTAATA
*
15985833 T-TTATTAA-TATTAATAA-A
1 TATTA-TAATTATTATTAATA
* * ** *
15985851 -AATAT-ATTAATGCTAATT
1 TATTATAATTATTATTAATA
15985869 TATTATAATTA--ATTAAT-
1 TATTATAATTATTATTAATA
* *
15985886 TATAATAATTATTAATTTATA
1 TATTATAATTATT-ATTAATA
15985907 -ATTATAAATTAATT-TT--TA
1 TATTAT-AATT-ATTATTAATA
15985925 T-TTAATAATTATATATTAAATA
1 TATT-ATAATTAT-TATT-AATA
* *
15985947 TAATATATTTAATTA-TAATA
1 TATTATAATT-ATTATTAATA
*
15985967 T-TATATAGTTATTA
1 TAT-TATAATTATTA
15985981 AAAAATTAAT
Statistics
Matches: 160, Mismatches: 20, Indels: 61
0.66 0.08 0.25
Matches are distributed among these distances:
16 1 0.01
17 19 0.12
18 22 0.14
19 22 0.14
20 42 0.26
21 19 0.12
22 21 0.13
23 4 0.03
24 10 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (20 bp):
TATTATAATTATTATTAATA
Found at i:15985826 original size:21 final size:21
Alignment explanation
Indices: 15985776--15985829 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
15985766 AAATAATTAT
*
15985776 TATAA-TTATTA-TTAATATA
1 TATAATTTATTATTTAATAAA
* * *
15985795 TTTAATATATTATTTGATAAA
1 TATAATTTATTATTTAATAAA
15985816 TATAATTTATTATT
1 TATAATTTATTATT
15985830 ATATTTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 4 0.15
20 5 0.19
21 18 0.67
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TATAATTTATTATTTAATAAA
Found at i:15985837 original size:12 final size:12
Alignment explanation
Indices: 15985784--15985843 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
15985774 ATTATAATTA
15985784 TTATTAATATAT
1 TTATTAATATAT
*
15985796 TTAAT-ATATTAT
1 TTATTAATA-TAT
*
15985808 TTGATAAATATAAT
1 TT-ATTAATAT-AT
*
15985822 TTATTATTATAT
1 TTATTAATATAT
15985834 TTATTAATAT
1 TTATTAATAT
15985844 TAATAAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
11 3 0.08
12 20 0.53
13 8 0.21
14 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (12 bp):
TTATTAATATAT
Found at i:15985893 original size:17 final size:17
Alignment explanation
Indices: 15985868--15985920 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
15985858 TAATGCTAAT
*
15985868 TTATTATAATTAATTAA
1 TTATAATAATTAATTAA
15985885 TTATAATAATT-ATTAA
1 TTATAATAATTAATTAA
* *
15985901 TTTATAATTATAAATTAA
1 -TTATAATAATTAATTAA
15985919 TT
1 TT
15985921 TTTATTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 5 0.16
17 21 0.68
18 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAATAATTAATTAA
Found at i:15985907 original size:14 final size:14
Alignment explanation
Indices: 15985871--15985916 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
15985861 TGCTAATTTA
15985871 TTATAATTAATTAAT
1 TTATAATT-ATTAAT
15985886 TATAATAATTATTAAT
1 T-T-ATAATTATTAAT
*
15985902 TTATAATTATAAAT
1 TTATAATTATTAAT
15985916 T
1 T
15985917 AATTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 12 0.43
15 2 0.07
16 8 0.29
17 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTATAATTATTAAT
Found at i:15985932 original size:25 final size:26
Alignment explanation
Indices: 15985865--15985969 Score: 80
Period size: 25 Copynumber: 4.2 Consensus size: 26
15985855 TATTAATGCT
*
15985865 AATTTATTA-TAA-TTAATTAATTAT-
1 AATTAATTATTAATTTAA-TAATTATA
15985889 AA-TAATTATTAATTT-ATAATTATA
1 AATTAATTATTAATTTAATAATTATA
*
15985913 AATTAATT-TTTATTTAATAATTATA
1 AATTAATTATTAATTTAATAATTATA
* * * *
15985938 TATTAAATA-TAATATATTTAATTATA
1 AATTAATTATTAATTTA-ATAATTATA
15985964 ATATTA
1 A-ATTA
15985970 TATAGTTATT
Statistics
Matches: 65, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
23 12 0.18
24 14 0.22
25 27 0.42
26 8 0.12
27 4 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
AATTAATTATTAATTTAATAATTATA
Found at i:15985934 original size:18 final size:18
Alignment explanation
Indices: 15985864--15985965 Score: 63
Period size: 18 Copynumber: 5.6 Consensus size: 18
15985854 ATATTAATGC
*
15985864 TAATTTATTA-TAATTAAT
1 TAATTTATAATTAA-TAAT
*
15985882 TAA-TTATAA-TAATTAT
1 TAATTTATAATTAATAAT
15985898 TAATTTATAATT-ATAAAT
1 TAATTTATAATTAAT-AAT
* *
15985916 TAATTTTTATTTAATAAT
1 TAATTTATAATTAATAAT
15985934 TATATATTA-AATATAATATATT
1 TA-AT-TTATAAT-TAATA-A-T
15985956 TAA-TTATAAT
1 TAATTTATAAT
15985966 ATTATATAGT
Statistics
Matches: 67, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
16 6 0.09
17 16 0.24
18 21 0.31
19 9 0.13
20 10 0.15
21 2 0.03
22 3 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTTATAATTAATAAT
Found at i:15985943 original size:14 final size:14
Alignment explanation
Indices: 15985870--15985969 Score: 53
Period size: 14 Copynumber: 7.8 Consensus size: 14
15985860 ATGCTAATTT
15985870 ATTATA-ATTAATTA
1 ATTATATATTAA-TA
*
15985884 ATTATA-A-TAATT
1 ATTATATATTAATA
15985896 ATTA-AT-TT-ATA
1 ATTATATATTAATA
*
15985907 ATTATAAATTAAT-
1 ATTATATATTAATA
*
15985920 -TTTTAT-TTAATA
1 ATTATATATTAATA
15985932 ATTATATATTAA-A
1 ATTATATATTAATA
*
15985945 TATAATATATT--TA
1 -ATTATATATTAATA
15985958 ATTATAATATTA
1 ATTAT-ATATTA
15985970 TATAGTTATT
Statistics
Matches: 66, Mismatches: 8, Indels: 24
0.67 0.08 0.24
Matches are distributed among these distances:
11 12 0.18
12 15 0.23
13 17 0.26
14 22 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTATATATTAATA
Found at i:15985958 original size:15 final size:16
Alignment explanation
Indices: 15985929--15985972 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
15985919 TTTTTATTTA
15985929 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
15985946 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
15985961 ATAATATTATAT
1 ATAATA-TATAT
15985973 AGTTATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 8 0.33
17 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:15986092 original size:18 final size:16
Alignment explanation
Indices: 15986041--15986089 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
15986031 TCAGCTTATT
15986041 TAATA-TTAATAATTA
1 TAATATTTAATAATTA
*
15986056 TAATATAATAAATAATTA
1 TAATAT--TTAATAATTA
15986074 TAATATTTAATTAATT
1 TAATATTTAA-TAATT
15986090 TATTTTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 5 0.18
16 3 0.11
17 5 0.18
18 15 0.54
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATATTTAATAATTA
Found at i:15987256 original size:12 final size:12
Alignment explanation
Indices: 15987241--15987333 Score: 52
Period size: 12 Copynumber: 7.7 Consensus size: 12
15987231 ACAATAATAT
15987241 TTATATTATTAA
1 TTATATTATTAA
*
15987253 TTAT-TAATTAA
1 TTATATTATTAA
* *
15987264 TTGTAATATTAA
1 TTATATTATTAA
*
15987276 CTGATA-TA--AA
1 -TTATATTATTAA
15987286 -TATATTATTAAAATA
1 TTATATTATT---A-A
15987301 TTATCATTATTAA
1 TTAT-ATTATTAA
*
15987314 TTATATTAATAA
1 TTATATTATTAA
15987326 TTATATTA
1 TTATATTA
15987334 ATTTGATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 22
0.67 0.09 0.24
Matches are distributed among these distances:
8 3 0.05
9 2 0.03
10 2 0.03
11 9 0.15
12 26 0.42
13 8 0.13
14 2 0.03
15 1 0.02
16 3 0.05
17 6 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (12 bp):
TTATATTATTAA
Found at i:15987334 original size:12 final size:12
Alignment explanation
Indices: 15987300--15987335 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
15987290 TTATTAAAAT
*
15987300 ATTATCATTATTA
1 ATTAT-ATTAATA
15987313 ATTATATTAATA
1 ATTATATTAATA
15987325 ATTATATTAAT
1 ATTATATTAAT
15987336 TTGATATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTATATTAATA
Found at i:15987690 original size:15 final size:14
Alignment explanation
Indices: 15987670--15987737 Score: 61
Period size: 15 Copynumber: 4.8 Consensus size: 14
15987660 ATATAATTAT
*
15987670 ATTATTATATATCAA
1 ATTATTA-ATATAAA
15987685 ATTATTAATATAAA
1 ATTATTAATATAAA
*
15987699 ATTAATTAATATAAT
1 ATT-ATTAATATAAA
15987714 ATTA--AAT-TCAAA
1 ATTATTAATAT-AAA
15987726 TATTATTAATAT
1 -ATTATTAATAT
15987738 TATTACAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
11 1 0.02
12 5 0.11
13 4 0.09
14 10 0.23
15 23 0.52
16 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTATTAATATAAA
Found at i:15987702 original size:34 final size:34
Alignment explanation
Indices: 15987656--15987721 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
15987646 GTTTTATGAC
* *
15987656 TAATATATAATTATATTATTAT-ATATCAAATTAT
1 TAATATAAAATTA-ATTAATATAATATCAAATTAT
*
15987690 TAATATAAAATTAATTAATATAATATTAAATT
1 TAATATAAAATTAATTAATATAATATCAAATT
15987722 CAAATATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (34 bp):
TAATATAAAATTAATTAATATAATATCAAATTAT
Found at i:15987770 original size:20 final size:18
Alignment explanation
Indices: 15987747--15987820 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 18
15987737 TTATTACAAA
15987747 TAATATAATTATATCAATAT
1 TAATATAATTATAT-AA-AT
15987767 TAATATGAATATATTATAAAT
1 TAATAT-AAT-TA-TATAAAT
* *
15987788 TATTATAATTATA-AAAA
1 TAATATAATTATATAAAT
*
15987805 TAATAATTATTATATA
1 TAAT-ATAATTATATA
15987821 TTATTTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
17 6 0.13
18 10 0.22
19 3 0.07
20 9 0.20
21 10 0.22
22 4 0.09
23 3 0.07
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
TAATATAATTATATAAAT
Found at i:15987820 original size:41 final size:42
Alignment explanation
Indices: 15987727--15987824 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 42
15987717 AAATTCAAAT
** *
15987727 ATTATTA-ATATTATTACAAATAATATAATTATATCAATATTA
1 ATTATTATATATTA-TACAAATAATATAATTATAAAAATAATA
* * *
15987769 A-TATGAATATATTATA-AATTATTATAATTATAAAAATAATA
1 ATTAT-TATATATTATACAAATAATATAATTATAAAAATAATA
15987810 ATTATTATATATTAT
1 ATTATTATATATTAT
15987825 TTATTTATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
41 33 0.72
42 7 0.15
43 6 0.13
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (42 bp):
ATTATTATATATTATACAAATAATATAATTATAAAAATAATA
Found at i:15987832 original size:15 final size:15
Alignment explanation
Indices: 15987814--15987863 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
15987804 ATAATAATTA
15987814 TTATATATTATTTAT
1 TTATATATTATTTAT
* * *
15987829 TTATATATAAATAAT
1 TTATATATTATTTAT
*
15987844 TTATA-AATATTTA-
1 TTATATATTATTTAT
15987857 TTATATA
1 TTATATA
15987864 AATTACATTC
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 17 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATATATTATTTAT
Found at i:15987985 original size:25 final size:26
Alignment explanation
Indices: 15987943--15987997 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
15987933 AGAAATTAAT
*
15987943 ATATTATTAAATAATAATTATTTACA
1 ATATTATTAAATAATAATTATATACA
* *
15987969 ATATTA-TAAATATTAATTATATATA
1 ATATTATTAAATAATAATTATATACA
15987994 ATAT
1 ATAT
15987998 AGTTTATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
ATATTATTAAATAATAATTATATACA
Found at i:15988346 original size:10 final size:9
Alignment explanation
Indices: 15988331--15988375 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
15988321 AATAATACTT
15988331 ATTATTAATA
1 ATTATTAA-A
15988341 ATTATTAAA
1 ATTATTAAA
*
15988350 ATTATAAATA
1 ATTATTAA-A
15988360 ATTAATTAAA
1 ATT-ATTAAA
15988370 ATTATT
1 ATTATT
15988376 TTAATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 11 0.35
10 16 0.52
11 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTATTAAA
Found at i:15988353 original size:19 final size:20
Alignment explanation
Indices: 15988331--15988375 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
15988321 AATAATACTT
15988331 ATTATTAATAATT-ATTAAA
1 ATTATTAATAATTAATTAAA
*
15988350 ATTATAAATAATTAATTAAA
1 ATTATTAATAATTAATTAAA
15988370 ATTATT
1 ATTATT
15988376 TTAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATTAATAATTAATTAAA
Found at i:15988564 original size:14 final size:13
Alignment explanation
Indices: 15988493--15988590 Score: 52
Period size: 14 Copynumber: 6.8 Consensus size: 13
15988483 AATATAAATT
15988493 TAATTATAATATAA
1 TAATTATAAT-TAA
* *
15988507 TACTAATAAAATTAA
1 TA--ATTATAATTAA
*
15988522 TTTATTATAATTAA
1 -TAATTATAATTAA
* *
15988536 TTATAATAAATTTAA
1 TAATTAT-AA-TTAA
15988551 TAATTATGAATTAA
1 TAATTAT-AATTAA
*
15988565 TAAATATAACTTAA
1 TAATTATAA-TTAA
15988579 TTAAGTTATAAT
1 -TAA-TTATAAT
15988591 AATTATTAAC
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
13 8 0.12
14 27 0.42
15 18 0.28
16 12 0.18
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
TAATTATAATTAA
Found at i:15988573 original size:32 final size:32
Alignment explanation
Indices: 15988492--15988573 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 32
15988482 AAATATAAAT
15988492 TTAATTATAA-T-AT-AATACTAATAAAATTAA
1 TTAATTATAATTAATAAATA-TAATAAAATTAA
* *
15988522 TTTATTATAATTAAT---TATAATAAATTTAA
1 TTAATTATAATTAATAAATATAATAAAATTAA
15988551 -TAATTATGAATTAATAAATATAA
1 TTAATTAT-AATTAATAAATATAA
15988574 CTTAATTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 6 0.14
29 18 0.42
30 11 0.26
31 1 0.02
32 7 0.16
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (32 bp):
TTAATTATAATTAATAAATATAATAAAATTAA
Found at i:15988590 original size:25 final size:23
Alignment explanation
Indices: 15988528--15988592 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 23
15988518 TTAATTTATT
*
15988528 ATAATTAA-TTATAATAAATTTA
1 ATAATTAAGTTATAATAAATATA
* *
15988550 ATAATTATG-AATTAATAAATATA
1 ATAATTAAGTTA-TAATAAATATA
15988573 ACTTAATTAAGTTATAATAA
1 A--TAATTAAGTTATAATAA
15988593 TTATTAACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
22 8 0.24
23 11 0.33
25 13 0.39
26 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.42
Consensus pattern (23 bp):
ATAATTAAGTTATAATAAATATA
Done.