Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 80 of 117
Found at i:16021491 original size:9 final size:9
Alignment explanation
Indices: 16021464--16021502 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 9
16021454 TATATATATT
16021464 TAATTAATAA
1 TAATT-ATAA
16021474 TATATTATAA
1 TA-ATTATAA
16021484 TAATTATAA
1 TAATTATAA
16021493 TAATTTATAA
1 TAA-TTATAA
16021503 ATTATTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 10 0.37
10 14 0.52
11 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TAATTATAA
Found at i:16022530 original size:16 final size:17
Alignment explanation
Indices: 16022509--16022543 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
16022499 GTTAATAATT
16022509 ATTTAATT-ATTAATAA
1 ATTTAATTAATTAATAA
16022525 ATTTAATTAATTAATAA
1 ATTTAATTAATTAATAA
16022542 AT
1 AT
16022544 AAATCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAATTAATTAATAA
Found at i:16024217 original size:25 final size:25
Alignment explanation
Indices: 16024092--16024218 Score: 67
Period size: 25 Copynumber: 5.1 Consensus size: 25
16024082 TATTTTAGAT
*
16024092 TATATTTATTATATAATAATATAATTAA
1 TATA-TTATTAT-T-ATAATATAATAAA
16024120 TATA--ATTATTAT-AT-T-A-AAA
1 TATATTATTATTATAATATAATAAA
* *
16024139 T-TGTTATATATCTATAATAT--TAAC
1 TATATTAT-TAT-TATAATATAATAAA
16024163 TATATTATTAAATTAT-ATATTAATTCAAA
1 TATATTATT--ATTATAATA-TAA-T-AAA
16024192 TATATTATTATTATAATATAATAAA
1 TATATTATTATTATAATATAATAAA
16024217 TA
1 TA
16024219 ATATAAAGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 35
0.66 0.04 0.30
Matches are distributed among these distances:
18 1 0.01
19 3 0.04
20 3 0.04
21 4 0.05
22 5 0.06
23 4 0.05
24 9 0.12
25 19 0.24
26 3 0.04
27 8 0.10
28 8 0.10
29 11 0.14
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (25 bp):
TATATTATTATTATAATATAATAAA
Found at i:16024594 original size:3 final size:3
Alignment explanation
Indices: 16024586--16024728 Score: 65
Period size: 3 Copynumber: 49.3 Consensus size: 3
16024576 CATATTTAAA
* * *
16024586 ATT ATT ATT A-T ATT AATA ATG A-T ATT ATT ATT A-T ATT AAT A-T
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
16024628 ATT ATCT ATT AAT A-T ATT ATT ATT ATT -TT AATA ATG A-T ATT ATT
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
* * * *
16024672 ATT ATT AAAT ATT A-T ATT ATT -TA ATT A-A ATTT ATT ATT AGTT A-A
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT A-TT ATT
16024716 ATT ATT ATT ATT A
1 ATT ATT ATT ATT A
16024729 AATATTATGA
Statistics
Matches: 107, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
2 17 0.16
3 78 0.73
4 12 0.11
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:16024637 original size:23 final size:22
Alignment explanation
Indices: 16024586--16024690 Score: 83
Period size: 23 Copynumber: 4.7 Consensus size: 22
16024576 CATATTTAAA
16024586 ATTATTATTATATTAATA-ATGAT
1 ATTATTATTATATTAATATAT--T
16024609 ATTATTATTATATTAATATATT
1 ATTATTATTATATTAATATATT
* *
16024631 ATCTATTAATATATTATTATTATT
1 AT-TATTATTATATTAATA-TATT
* *
16024655 -TTAATAATGATATT-AT-TATT
1 ATT-ATTATTATATTAATATATT
*
16024675 ATTAAATATTATATTA
1 ATT-ATTATTATATTA
16024691 TTTAATTAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
20 4 0.06
21 11 0.16
22 5 0.07
23 41 0.61
24 6 0.09
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (22 bp):
ATTATTATTATATTAATATATT
Found at i:16024639 original size:15 final size:14
Alignment explanation
Indices: 16024591--16024760 Score: 77
Period size: 15 Copynumber: 12.8 Consensus size: 14
16024581 TTAAAATTAT
16024591 TATTA-TATTAATA
1 TATTATTATTAATA
*
16024604 -ATGA-TATT-AT-
1 TATTATTATTAATA
16024614 TATTA-TATTAATA
1 TATTATTATTAATA
16024627 TATTATCTATTAATA
1 TATTAT-TATTAATA
16024642 TATTATTATT-AT-
1 TATTATTATTAATA
* * *
16024654 T-TTAATAATGATA
1 TATTATTATTAATA
16024667 TTATTATTATTAA-A
1 -TATTATTATTAATA
16024681 TATTA-TATT-AT-
1 TATTATTATTAATA
* *
16024692 T-TAATTA--AATT
1 TATTATTATTAATA
16024703 TATTATTAGTTAA-A
1 TATTATTA-TTAATA
16024717 TTATTATTATTAAATA
1 -TATTATTATT-AATA
*
16024733 TTATGATTTATTAATA
1 -TATTA-TTATTAATA
*
16024749 AATTTATTATTA
1 TA-TTATTATTA
16024761 GTTATAACCA
Statistics
Matches: 122, Mismatches: 13, Indels: 42
0.69 0.07 0.24
Matches are distributed among these distances:
10 4 0.03
11 20 0.16
12 21 0.17
13 12 0.10
14 8 0.07
15 40 0.33
16 12 0.10
17 5 0.04
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTATTATTAATA
Found at i:16024647 original size:57 final size:59
Alignment explanation
Indices: 16024581--16024710 Score: 180
Period size: 57 Copynumber: 2.3 Consensus size: 59
16024571 ATATTCATAT
*
16024581 TTAAA-ATTATTATTATATTAATAATGATATTATTATTA-T-ATTAATATATTATCT-A
1 TTAAATATTATTATTATATTAATAATGATATTATTATTATTAAATAATATATTATCTAA
* * *
16024636 TTAATATATTATTATTATTTTAATAATGATATTATTATTATTAAATATTATATTATTTAA
1 TTAA-ATATTATTATTATATTAATAATGATATTATTATTATTAAATAATATATTATCTAA
16024696 TTAAAT-TTATTATTA
1 TTAAATATTATTATTA
16024711 GTTAAATTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
55 4 0.06
56 1 0.02
57 32 0.48
58 10 0.15
59 14 0.21
60 5 0.08
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (59 bp):
TTAAATATTATTATTATATTAATAATGATATTATTATTATTAAATAATATATTATCTAA
Found at i:16024650 original size:34 final size:34
Alignment explanation
Indices: 16024607--16024760 Score: 93
Period size: 35 Copynumber: 4.4 Consensus size: 34
16024597 ATTAATAATG
*
16024607 ATATTATTATTATATTAATATA-TTATCTATTAAT
1 ATATTATTATTATATTAATATTATTAT-TATTAAT
* *
16024641 ATATTATTATTATTTTAATAATGATATTATTATTATTAA
1 ATATTATTATTATATTAAT-AT--TATTATTATTA--AT
* *
16024680 ATATTA-TATTAT-TTAAT-TAAATTTATTATTAGTT
1 ATATTATTATTATATTAATAT-TA-TTATTATTA-AT
* * *
16024714 AAATTATTATTAT-TAAATATTATGATTTATTAAT
1 ATATTATTATTATATTAATATTATTA-TTATTAAT
*
16024748 AAATTTATTATTA
1 ATA-TTATTATTA
16024761 GTTATAACCA
Statistics
Matches: 97, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
34 31 0.32
35 38 0.39
36 1 0.01
37 10 0.10
38 10 0.10
39 7 0.07
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.56
Consensus pattern (34 bp):
ATATTATTATTATATTAATATTATTATTATTAAT
Found at i:16024700 original size:20 final size:19
Alignment explanation
Indices: 16024664--16024715 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
16024654 TTTAATAATG
*
16024664 ATATTATTATTATTAAATATT
1 ATATTATT-TAATTAAAT-TT
16024685 ATATTATTTAATTAAATTT
1 ATATTATTTAATTAAATTT
*
16024704 ATTATTAGTTAA
1 A-TATTATTTAA
16024716 ATTATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 17 0.61
21 8 0.29
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
ATATTATTTAATTAAATTT
Found at i:16024730 original size:50 final size:50
Alignment explanation
Indices: 16024666--16024764 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
16024656 TAATAATGAT
16024666 ATTATTATTATTAAATATTAT-A-TTATTTAATTAAATTTATTATTAGTTAA
1 ATTATTATTATTAAATATTATGATTTA-TTAA-TAAATTTATTATTAGTTAA
16024716 ATTATTATTATTAAATATTATGATTTATTAATAAATTTATTATTAGTTA
1 ATTATTATTATTAAATATTATGATTTATTAATAAATTTATTATTAGTTA
16024765 TAACCAATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
50 39 0.83
51 5 0.11
52 3 0.06
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (50 bp):
ATTATTATTATTAAATATTATGATTTATTAATAAATTTATTATTAGTTAA
Found at i:16024742 original size:38 final size:37
Alignment explanation
Indices: 16024608--16024760 Score: 103
Period size: 37 Copynumber: 4.2 Consensus size: 37
16024598 TTAATAATGA
* *
16024608 TATTATTATT--ATATTAAT-ATATTATCTATTAATATAT
1 TATTATTATTAAATATT-ATGAT-TTAT-TATTATTAAAT
*
16024645 TATTATTATTTTAATA--ATGATATTATTATTATTAAA-
1 TATTATTA-TTAAATATTATGAT-TTATTATTATTAAAT
** *
16024681 TATTA-TATTATTTAATTA-AATTTATTATTAGTTAAAT
1 TATTATTATTAAAT-ATTATGATTTATTATTA-TTAAAT
16024718 TATTATTATTAAATATTATGATTTATTA--A-TAAATT
1 TATTATTATTAAATATTATGATTTATTATTATTAAA-T
16024753 TATTATTA
1 TATTATTA
16024761 GTTATAACCA
Statistics
Matches: 95, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
34 7 0.07
35 21 0.22
36 13 0.14
37 28 0.29
38 23 0.24
40 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (37 bp):
TATTATTATTAAATATTATGATTTATTATTATTAAAT
Found at i:16025013 original size:21 final size:21
Alignment explanation
Indices: 16024981--16025021 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16024971 AATCAAAATA
16024981 ATTTTAAATAATTAT-TATTT
1 ATTTTAAATAATTATATATTT
*
16025001 ATTTATAATTAATTATATATT
1 ATTT-TAAATAATTATATATT
16025022 AATATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTAAATAATTATATATTT
Found at i:16025047 original size:24 final size:24
Alignment explanation
Indices: 16025020--16025075 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
16025010 TAATTATATA
16025020 TTAATATATTAA-AAA-TATTAAAT
1 TTAATATATTAATAAAGT-TTAAAT
16025043 GTTAA-ATATTAATAAAGTTTAAAT
1 -TTAATATATTAATAAAGTTTAAAT
*
16025067 TTATTATAT
1 TTAATATAT
16025076 ATATAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 10 0.36
24 17 0.61
25 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (24 bp):
TTAATATATTAATAAAGTTTAAAT
Found at i:16025109 original size:58 final size:58
Alignment explanation
Indices: 16025002--16025114 Score: 140
Period size: 58 Copynumber: 1.9 Consensus size: 58
16024992 TTATTATTTA
* *
16025002 TTTATAATTAATTATATATTAATATATTAAAAATATTAAATGTTAAATATTAATAAAG
1 TTTATAATTAATTATATATTAATATATTAAAAATAATAAATGTTAAATATGAATAAAG
* * * *
16025060 TTTA-AATTTATTATATATATAATTTATTTAAAATTAAT-AATTTTAAATATGAATA
1 TTTATAATTAATTATATAT-TAATATA-TTAAAAATAATAAATGTTAAATATGAATA
16025115 TAATTAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 13 0.28
58 25 0.53
59 9 0.19
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.48
Consensus pattern (58 bp):
TTTATAATTAATTATATATTAATATATTAAAAATAATAAATGTTAAATATGAATAAAG
Found at i:16025205 original size:15 final size:15
Alignment explanation
Indices: 16025162--16025256 Score: 65
Period size: 15 Copynumber: 6.3 Consensus size: 15
16025152 ATTTAATTTG
*
16025162 ATAAAATAAT-TTAT
1 ATAAATTAATATTAT
*
16025176 ATAATGTTAAT-TTAT
1 ATAA-ATTAATATTAT
*
16025191 ATAACTTAATATTAT
1 ATAAATTAATATTAT
*
16025206 AATATAATTGATAGTT-T
1 -ATA-AATTAATA-TTAT
16025223 ATAAATTAATA-TAT
1 ATAAATTAATATTAT
16025237 AATATAATT-ATATTAT
1 -ATA-AATTAATATTAT
16025253 ATAA
1 ATAA
16025257 TTTACAATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
13 1 0.02
14 11 0.17
15 32 0.48
16 13 0.20
17 7 0.11
18 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (15 bp):
ATAAATTAATATTAT
Found at i:16025500 original size:21 final size:22
Alignment explanation
Indices: 16025474--16025520 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 22
16025464 GATTAAAATT
16025474 TTATAAT-TTATATATT-TTAAA
1 TTATAATCTTAT-TATTATTAAA
16025495 TTATAATCTTATTATTAGTTAAA
1 TTATAATCTTATTATTA-TTAAA
16025518 TTA
1 TTA
16025521 ACTAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 11 0.48
22 4 0.17
23 8 0.35
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TTATAATCTTATTATTATTAAA
Found at i:16026305 original size:28 final size:27
Alignment explanation
Indices: 16026255--16026326 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 27
16026245 TAAATTCATT
*
16026255 ATTATTATTATTAATATTAAATATAAAATG
1 ATTA-TATTA-TAATATTAAATAT-AAATA
*
16026285 ATTATATTATAAT-TTATAATATAAGTA
1 ATTATATTATAATATTA-AATATAAATA
16026312 ATTAATATTATAATA
1 ATT-ATATTATAATA
16026327 ATTATAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
27 9 0.24
28 19 0.51
29 5 0.14
30 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
ATTATATTATAATATTAAATATAAATA
Found at i:16026313 original size:16 final size:15
Alignment explanation
Indices: 16026288--16026342 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
16026278 TAAAATGATT
*
16026288 ATATTATAATTTATA
1 ATATAATAATTTATA
*
16026303 ATATAAGTAATTAATA
1 ATATAA-TAATTTATA
*
16026319 TTATAATAA-TTATA
1 ATATAATAATTTATA
*
16026333 A-ATTATAATT
1 ATATAATAATT
16026343 ATTATTACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
13 6 0.19
14 5 0.16
15 8 0.25
16 13 0.41
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATAATAATTTATA
Found at i:16026389 original size:13 final size:13
Alignment explanation
Indices: 16026316--16026406 Score: 53
Period size: 13 Copynumber: 6.8 Consensus size: 13
16026306 TAAGTAATTA
*
16026316 ATATTATAATAAT
1 ATATTATTATAAT
*
16026329 -TATAAATTATAAT
1 ATAT-TATTATAAT
*
16026342 -TATTATTACAATT
1 ATATTATTATAA-T
16026355 GATATTAAGTTGA-AAT
1 -ATATT-A-TT-ATAAT
*
16026371 AAATTATTATAAT
1 ATATTATTATAAT
*
16026384 ATATTATTATAAA
1 ATATTATTATAAT
*
16026397 ATATAATTAT
1 ATATTATTAT
16026407 TTTATATAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
12 10 0.16
13 36 0.58
14 1 0.02
15 8 0.13
16 2 0.03
17 4 0.06
18 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (13 bp):
ATATTATTATAAT
Found at i:16026419 original size:18 final size:19
Alignment explanation
Indices: 16026378--16026423 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
16026368 AATAAATTAT
16026378 TATAATATATTATTATAAAA
1 TATAAT-TATTATTATAAAA
* *
16026398 TATAATTATT-TTATATAG
1 TATAATTATTATTATAAAA
16026416 TATAATTA
1 TATAATTA
16026424 AGTTTATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 14 0.58
19 4 0.17
20 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
TATAATTATTATTATAAAA
Found at i:16026438 original size:62 final size:61
Alignment explanation
Indices: 16026304--16026439 Score: 143
Period size: 62 Copynumber: 2.2 Consensus size: 61
16026294 TAATTTATAA
* * * *
16026304 TATAAGTAATTAATATTATAATAATTATAAATTATAATTATTATTACAATTGATATTAAGTT
1 TATAA-TAATTATTATAATAATAATTATAAAATATAATTATTATTACAAGTGATATTAAGTT
* * *
16026366 GA-AATAAATTATTATAATATATTATTATAAAATATAATTATT-TTATATAGT-ATAATTAAGTT
1 TATAAT-AATTATTATAATA-ATAATTATAAAATATAATTATTATTACA-AGTGAT-ATTAAGTT
16026428 TATAATAATTAT
1 TATAATAATTAT
16026440 ATTTAGTTGT
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
60 1 0.02
61 19 0.31
62 38 0.62
63 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (61 bp):
TATAATAATTATTATAATAATAATTATAAAATATAATTATTATTACAAGTGATATTAAGTT
Found at i:16026523 original size:7 final size:7
Alignment explanation
Indices: 16026485--16026573 Score: 53
Period size: 7 Copynumber: 13.0 Consensus size: 7
16026475 TAATAATATA
16026485 ATTAA-T
1 ATTAATT
*
16026491 ATCAATT
1 ATTAATT
* *
16026498 ATGACTT
1 ATTAATT
*
16026505 ATTACTT
1 ATTAATT
16026512 ATTAATT
1 ATTAATT
16026519 ATTAATT
1 ATTAATT
16026526 AATTAA-T
1 -ATTAATT
16026533 ATT-A-T
1 ATTAATT
*
16026538 ATTAATA
1 ATTAATT
*
16026545 AATAATT
1 ATTAATT
16026552 A-TAATT
1 ATTAATT
*
16026558 AATAACTTT
1 ATTAA--TT
16026567 ATTAATT
1 ATTAATT
16026574 TATAATAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
5 5 0.07
6 14 0.21
7 37 0.55
8 5 0.07
9 6 0.09
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (7 bp):
ATTAATT
Found at i:16026526 original size:11 final size:11
Alignment explanation
Indices: 16026512--16026560 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
16026502 CTTATTACTT
*
16026512 ATTAATTATTA
1 ATTAATTAATA
16026523 ATTAATTAAT-
1 ATTAATTAATA
16026533 ATTATATTAATA
1 ATTA-ATTAATA
*
16026545 AATAATT-ATA
1 ATTAATTAATA
16026555 ATTAAT
1 ATTAAT
16026561 AACTTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 12 0.36
11 18 0.55
12 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTAATTAATA
Found at i:16026558 original size:22 final size:21
Alignment explanation
Indices: 16026475--16026560 Score: 59
Period size: 22 Copynumber: 4.0 Consensus size: 21
16026465 TCAATTATTA
*
16026475 TAATAATATAATTAATATCAAT
1 TAATAA-ATAATTAATATTAAT
* * * *
16026497 T-ATGACTTATTACTTATTAAT
1 TAATAAATAATTA-ATATTAAT
* *
16026518 TATTAATTAATTAATATTATAT
1 TAATAAATAATTAATATTA-AT
16026540 TAATAAATAATT-ATAATTAAT
1 TAATAAATAATTAAT-ATTAAT
16026561 AACTTTATTA
Statistics
Matches: 48, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
20 5 0.10
21 19 0.40
22 24 0.50
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (21 bp):
TAATAAATAATTAATATTAAT
Found at i:16026818 original size:23 final size:23
Alignment explanation
Indices: 16026761--16026818 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
16026751 TTTAAATTGG
*
16026761 ATAATTTA-ATATTTGATTATAA
1 ATAATTTATATAATTGATTATAA
*
16026783 AT-ATTCATAATAATT-ATTAATAA
1 ATAATTTAT-ATAATTGATT-ATAA
16026806 ATAATTTATATAA
1 ATAATTTATATAA
16026819 GCAAAGACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 4 0.14
22 5 0.17
23 15 0.52
24 5 0.17
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATAATTTATATAATTGATTATAA
Found at i:16027264 original size:23 final size:24
Alignment explanation
Indices: 16027217--16027265 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
16027207 TTTTTGTTTA
*
16027217 TATAAATTATTTATTAATAATTAT
1 TATAAATTATTTATTAATAAATAT
16027241 TATAAA-TATTTA-TAATCAAATAT
1 TATAAATTATTTATTAAT-AAATAT
16027264 TA
1 TA
16027266 ATAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 13 0.57
24 6 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TATAAATTATTTATTAATAAATAT
Found at i:16027276 original size:13 final size:13
Alignment explanation
Indices: 16027242--16027276 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
16027232 AATAATTATT
*
16027242 ATAAATATTTATA
1 ATAAATATTAATA
16027255 ATCAAATATTAATA
1 AT-AAATATTAATA
16027269 ATAAATAT
1 ATAAATAT
16027277 ATTTTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATATTAATA
Found at i:16027333 original size:24 final size:24
Alignment explanation
Indices: 16027306--16027406 Score: 61
Period size: 24 Copynumber: 4.2 Consensus size: 24
16027296 CTTATATTTA
16027306 AATAAGTATTATTAATTAATTATT
1 AATAAGTATTATTAATTAATTATT
*
16027330 AAT-A-TATAATTAATTTTAATTATTT
1 AATAAGTATTATTAA--TTAATTA-TT
*
16027355 AAT-AGTATATAATTAAGTAA-TATT
1 AATAAGTAT-T-ATTAATTAATTATT
* *
16027379 AA-AATTATTATATAAATT-ATGATT
1 AATAAGTATTAT-T-AATTAATTATT
16027403 AATA
1 AATA
16027407 TATAGTGTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
22 10 0.17
23 4 0.07
24 26 0.43
25 9 0.15
26 6 0.10
28 5 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AATAAGTATTATTAATTAATTATT
Found at i:16027338 original size:28 final size:28
Alignment explanation
Indices: 16027307--16027366 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
16027297 TTATATTTAA
*
16027307 ATAAGT-ATTATTAATTAATTATTAATAT
1 ATAAGTAATT-TTAATTAATTAATAATAT
* * *
16027335 ATAATTAATTTTAATTATTTAATAGTAT
1 ATAAGTAATTTTAATTAATTAATAATAT
16027363 ATAA
1 ATAA
16027367 TTAAGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (28 bp):
ATAAGTAATTTTAATTAATTAATAATAT
Found at i:16027357 original size:18 final size:19
Alignment explanation
Indices: 16027313--16027357 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
16027303 TTAAATAAGT
16027313 ATTA-TTAATTAATTATTA
1 ATTATTTAATTAATTATTA
*
16027331 A-TATATAATTAATT-TTA
1 ATTATTTAATTAATTATTA
16027348 ATTATTTAAT
1 ATTATTTAAT
16027358 AGTATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTATTTAATTAATTATTA
Found at i:16027367 original size:28 final size:28
Alignment explanation
Indices: 16027317--16027370 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
16027307 ATAAGTATTA
*
16027317 TTAATTAATTATTAATATATAATTAATT
1 TTAATTAATTAATAATATATAATTAATT
* *
16027345 TTAATTATTTAATAGTATATAATTAA
1 TTAATTAATTAATAATATATAATTAA
16027371 GTAATATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
TTAATTAATTAATAATATATAATTAATT
Found at i:16027514 original size:42 final size:40
Alignment explanation
Indices: 16027468--16027565 Score: 94
Period size: 42 Copynumber: 2.4 Consensus size: 40
16027458 TTACTTAAAA
*
16027468 TAAAATTTAATATTTATTTTTAAT-TTAAACAAATTAATATAT
1 TAAAATTTAATATTTAGTTTTAATATT-AA-AAATTAATAT-T
*
16027510 TAAAACAATTT-ATA-TTAGTTTTAATATTTAAAATTAATATT
1 T--AA-AATTTAATATTTAGTTTTAATATTAAAAATTAATATT
16027551 TAAAATTTAAATATT
1 TAAAATTT-AATATT
16027566 ATATATATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
38 5 0.11
39 2 0.04
40 3 0.06
41 3 0.06
42 11 0.23
43 11 0.23
44 7 0.15
45 5 0.11
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (40 bp):
TAAAATTTAATATTTAGTTTTAATATTAAAAATTAATATT
Found at i:16027548 original size:13 final size:13
Alignment explanation
Indices: 16027530--16027557 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16027520 TATATTAGTT
16027530 TTAATATTTAAAA
1 TTAATATTTAAAA
16027543 TTAATATTTAAAA
1 TTAATATTTAAAA
16027556 TT
1 TT
16027558 TAAATATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAATATTTAAAA
Found at i:16027609 original size:28 final size:26
Alignment explanation
Indices: 16027578--16027634 Score: 60
Period size: 28 Copynumber: 2.1 Consensus size: 26
16027568 ATATATTATC
*
16027578 TATTATTACAAATATTAATATTATAAAT
1 TATTACTACAAATATTAAT-TT-TAAAT
* * *
16027606 TATTGCTATACATATTAATTTTAAAT
1 TATTACTACAAATATTAATTTTAAAT
16027632 TAT
1 TAT
16027635 ATAATTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.32
27 2 0.08
28 15 0.60
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (26 bp):
TATTACTACAAATATTAATTTTAAAT
Found at i:16027689 original size:11 final size:11
Alignment explanation
Indices: 16027672--16027702 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
16027662 TTAGGTATCT
16027672 AATATAATTAC
1 AATATAATTAC
*
16027683 GATATAATTAC
1 AATATAATTAC
16027694 AATATAATT
1 AATATAATT
16027703 GTGTAAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (11 bp):
AATATAATTAC
Found at i:16028484 original size:14 final size:13
Alignment explanation
Indices: 16028465--16028506 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
16028455 TTTATTATGA
16028465 TTATATTAATTTAT
1 TTATATT-ATTTAT
16028479 TTATATTATTTA-
1 TTATATTATTTAT
**
16028491 GAATATTATTTAT
1 TTATATTATTTAT
16028504 TTA
1 TTA
16028507 AATAATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 6 0.26
14 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATTATTTAT
Found at i:16028806 original size:21 final size:22
Alignment explanation
Indices: 16028781--16028831 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
16028771 TATTTCTATC
*
16028781 TTAAATTAAATATTATTTAAG-A
1 TTAAATTAAATAAT-TTTAAGAA
16028803 -TAAATTAAATAATTTTAAGAA
1 TTAAATTAAATAATTTTAAGAA
16028824 TTAAATTA
1 TTAAATTA
16028832 TATTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.23
21 13 0.50
22 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
TTAAATTAAATAATTTTAAGAA
Found at i:16028889 original size:21 final size:22
Alignment explanation
Indices: 16028859--16028899 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
16028849 ATATTTAATT
16028859 ATTATATAATAAT-TAATTTGA
1 ATTATATAATAATATAATTTGA
* *
16028880 ATTATTTAATATTATAATTT
1 ATTATATAATAATATAATTT
16028900 ATTGCTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTATATAATAATATAATTTGA
Found at i:16028933 original size:13 final size:14
Alignment explanation
Indices: 16028915--16029020 Score: 51
Period size: 13 Copynumber: 7.4 Consensus size: 14
16028905 TTATAACTAA
16028915 TAATAAATT-TAAT
1 TAATAAATTATAAT
16028928 TAATAAATTATAATATT
1 TAATAAATTAT-A-A-T
* *
16028945 TAATAATAATATCAT
1 TAATAA-ATTATAAT
*
16028960 T-ATTAA-TATAA-
1 TAATAAATTATAAT
16028971 TAATATATTATTATAAT
1 TAATA-A--ATTATAAT
* *
16028988 TAA-CAATAATAAT
1 TAATAAATTATAAT
*
16029001 AAATAAATTTATAAT
1 TAATAAA-TTATAAT
16029016 TAATA
1 TAATA
16029021 TAACTATTAC
Statistics
Matches: 69, Mismatches: 11, Indels: 24
0.66 0.11 0.23
Matches are distributed among these distances:
11 1 0.01
12 6 0.09
13 20 0.29
14 6 0.09
15 15 0.22
16 7 0.10
17 10 0.14
18 4 0.06
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATAAATTATAAT
Found at i:16028995 original size:20 final size:20
Alignment explanation
Indices: 16028923--16028995 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
16028913 AATAATAAAT
* * *
16028923 TTAATTAATAAATTATAATAT
1 TTAA-TAATATATTATTATAA
*
16028944 TTAATAATAATATCATTATTAA
1 TTAATAAT-ATATTATTA-TAA
16028966 TATAATAATATATTATTATAA
1 T-TAATAATATATTATTATAA
*
16028987 TTAACAATA
1 TTAATAATA
16028996 ATAATAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
20 11 0.26
21 14 0.33
22 11 0.26
23 7 0.16
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATAATATATTATTATAA
Found at i:16029553 original size:15 final size:14
Alignment explanation
Indices: 16029535--16029571 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
16029525 TGTTAATTAT
16029535 ATATAATATTAATAA
1 ATATAATATT-ATAA
*
16029550 ATATAATATTATTA
1 ATATAATATTATAA
16029564 ATATAATA
1 ATATAATA
16029572 AATTATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATAATATTATAA
Found at i:16029562 original size:18 final size:18
Alignment explanation
Indices: 16029540--16029588 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
16029530 ATTATATATA
16029540 ATATTAATA-AATATAA-T
1 ATATTAATATAATA-AATT
16029557 ATTATTAATATAATAAATT
1 A-TATTAATATAATAAATT
16029576 ATATTAATATAAT
1 ATATTAATATAAT
16029589 GATATTAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.03
18 22 0.76
19 6 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTAATATAATAAATT
Found at i:16029585 original size:32 final size:34
Alignment explanation
Indices: 16029527--16029596 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 34
16029517 TATATATATG
16029527 TTAATTATATATAATATTAATAAATATAAT-ATTA
1 TTAATTATATATAATATTAATAAATATAATGA-TA
*
16029561 TTAA-TATA-ATAA-ATTATATTAATATAATGATA
1 TTAATTATATATAATATTA-ATAAATATAATGATA
16029593 TTAA
1 TTAA
16029597 ACTATTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 4 0.12
32 20 0.61
33 5 0.15
34 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (34 bp):
TTAATTATATATAATATTAATAAATATAATGATA
Found at i:16029597 original size:24 final size:23
Alignment explanation
Indices: 16029530--16029610 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 23
16029520 ATATATGTTA
16029530 ATTATATATAATATTAATAAA-TAT
1 ATTA-ATATAATA-TAATAAACTAT
* * *
16029554 AATATTATTAATATAATAAATTAT
1 ATTAATA-TAATATAATAAACTAT
*
16029578 ATTAATATAATGATATTAAACTAT
1 ATTAATATAAT-ATAATAAACTAT
*
16029602 TTTAATATA
1 ATTAATATA
16029611 TAAAAATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 13 0.28
24 34 0.72
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (23 bp):
ATTAATATAATATAATAAACTAT
Found at i:16029765 original size:21 final size:20
Alignment explanation
Indices: 16029719--16029757 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
16029709 ATCTCAATTT
*
16029719 ATAATTATAATATAGTTACA
1 ATAATTATAATATAATTACA
16029739 ACTAATTATAATATAATTA
1 A-TAATTATAATATAATTA
16029758 TTAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
ATAATTATAATATAATTACA
Found at i:16029767 original size:18 final size:18
Alignment explanation
Indices: 16029741--16029814 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
16029731 TAGTTACAAC
* *
16029741 TAATTATAATATAATTAT
1 TAATAATAATATAATAAT
16029759 TAATAATAACTATAA-AAT
1 TAATAATAA-TATAATAAT
* *
16029777 TAATTATATTATAATAAT
1 TAATAATAATATAATAAT
16029795 TAATAA-ACCATATAATAAT
1 TAATAATA--ATATAATAAT
16029814 T
1 T
16029815 TATTATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
17 6 0.13
18 25 0.54
19 15 0.33
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATAATAATATAATAAT
Found at i:16029809 original size:36 final size:37
Alignment explanation
Indices: 16029741--16029825 Score: 102
Period size: 36 Copynumber: 2.3 Consensus size: 37
16029731 TAGTTACAAC
*
16029741 TAATTATAATATAATTATTAATAATAACTATAA-AAT
1 TAATTATAATATAATAATTAATAATAACTATAATAAT
* *
16029777 TAATTATATTATAATAATTAATAA-ACCATATAATAAT
1 TAATTATAATATAATAATTAATAATAAC-TATAATAAT
* *
16029814 TTATTATTATAT
1 TAATTATAATAT
16029826 TAAAAAAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 2 0.05
36 27 0.66
37 12 0.29
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (37 bp):
TAATTATAATATAATAATTAATAATAACTATAATAAT
Found at i:16031165 original size:26 final size:26
Alignment explanation
Indices: 16031136--16031188 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16031126 GTTGACTTAG
* *
16031136 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16031162 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16031188 G
1 G
16031189 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16032926 original size:26 final size:26
Alignment explanation
Indices: 16032897--16032948 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16032887 TTGGCTTAGA
*
16032897 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16032923 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16032949 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16034704 original size:26 final size:26
Alignment explanation
Indices: 16034665--16034717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16034655 GTTGATTTAG
16034665 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
16034691 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
16034717 G
1 G
16034718 ATCCGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:16034843 original size:185 final size:185
Alignment explanation
Indices: 16034506--16034931 Score: 584
Period size: 185 Copynumber: 2.3 Consensus size: 185
16034496 GTTGGCTTAG
* ** * * * *
16034506 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGTGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
16034571 ACATGTAGAGGTGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGC
66 ACATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
* *
16034636 CCGTACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAATTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
* * * * * * *
16034691 GCATACAGAGTTCATTCTCAGTCTAAGATCCGACCAAACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* **
16034756 GCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
66 ACATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
* * * *
16034821 CCGCACGCTCATTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
131 CCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
*
16034876 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
16034932 CATGCTGGGC
Statistics
Matches: 207, Mismatches: 33, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
185 203 0.98
186 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
ACATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
Found at i:16034886 original size:26 final size:26
Alignment explanation
Indices: 16034850--16034902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16034840 GTTGACTTAG
*
16034850 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16034876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16034902 G
1 G
16034903 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16035762 original size:26 final size:26
Alignment explanation
Indices: 16035733--16035785 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16035723 GTTGACTTAG
16035733 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16035759 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16035785 G
1 G
16035786 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16036983 original size:864 final size:868
Alignment explanation
Indices: 16034876--16040059 Score: 6610
Period size: 864 Copynumber: 5.9 Consensus size: 868
16034866 CCTAGTCTAA
*
16034876 GCATACGGAGTTCATTCCCAGTCTAAGA-T--CAGAC-CGGACC-GAGGGTTACGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGACAG-CTAGGACCTGAGGGTTACGGCAGCACATG
* * **
16034936 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTAGGGGCACCATCATCGGAGCATCACC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACC
* ** *
16035001 GGAGAATCTGACTAGCGGCATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGGGTGTGCGCACA
130 GGAGAACCTGACCGGCGGCATTGGGGTTCCTG-CGATC-GGGGGG-C-GGGGGGGTGTGCGCACA
* * * * *
16035065 TGATGTCCGATTGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCGTCATCAAACCTCGAC
191 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
16035130 AACTCAC-ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCAATAGCCATTCAAGTG
256 AACTCACAACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
* * ** * * *
16035193 TCTTAAATGGGGACACTATTTTCAAATGACCACAAAATCTTGTACACTTCAAGTTTTTACCTAAA
320 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
16035258 TTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCTAAAACTCCTT
385 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
16035322 CCAAAAAAATTTTAAAAAATCCCCAACCGTAAAAAGTTTCGAAAATCATAAAAAATAGAAAAGGA
450 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
16035387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAA
515 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
16035452 AAATGGCATTGGCACCCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCAC
580 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
16035517 GGATTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCGCGCTCATTTCGT
645 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCGT
* * * * *
16035574 CGGTTGCCTTAGGCGTAC-GACGTTTATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTACGGC
710 CGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGC
* *
16035638 AGCAGGCAGAGTGGGACCCAGTCAATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGGGCG
774 AGCAGGCAGAGGGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGGGCG
*
16035703 CCCGCACGCTCGTTCCGTGGGTTGACTTAG
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
16035733 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-T---G---A----CAG-CT-AG---G-A-C---C
* *
16035798 TGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
44 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
16035863 CACCATCGCCGGAGCATCACCGGAGAACTTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGT
109 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGC
*
16035928 TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
174 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
16035993 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCC
239 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
* * *
16036058 AGTAGCCATTAAAGTGTGTTAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
304 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16036123 TGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTT
369 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * **
16036188 GGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATTGT
434 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* *
16036253 GAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
499 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
16036318 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
564 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
16036383 CACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
629 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
16036448 CGCGCGCTCGTTTCATCGGTTGCCTTAGGCGTACGGAGTTCATTCACAGTCTAAGATCAGACCGG
694 CGCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** *
16036513 ATTAAGGGTTGCAGCAGCAGGCAGATTGGGACCCAGTCGATCCCCGACTTATGCATCCCGCCCCT
759 ACTAAGGGTTGCAGCAGCAGGCAGAGGGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCT
* * *
16036578 CTGACCGGTTGGGCGCCCGCACGTTCATTTCGTGGGTTGACTTAG
824 CTGGCCGGTTGGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16036623 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-A-CT-GGACC-GAGGATCACGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGACAGCTAGGACCTGAGGGTTACGGCAGCACATGC
* *** * * * *
16036684 TAGGCAATGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCGCCGGAGCATCACCA
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCG
* * *
16036749 GAGAACCTGACTGGCGGCATTGGGGTTCCTGCGATCGGGAGGCCGGGGGGTGTGCGCACATGATG
131 GAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATG
* *
16036814 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16036879 ACAACCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCAACCACTAGCCATTAAAGTGTCTGAA
261 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
*
16036944 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
16037009 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAA
391 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
16037074 AAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
456 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * ** *
16037139 TTGCCACGAAACTTCACGTGAAGGCTTAAGGGAACGCTGTATGAATTTACAAGCCAAAAAAATGG
521 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
16037204 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGATCCATGGCTTG
586 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
16037269 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGACCGCCCACCCGCGTGCTCGTTTCGTCAGTTG
651 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCGTCGGTTG
* * * *
16037334 GCTTAGGCGTACGGAGTTCAGTCTCAGTCTAAGATCAGACCAGACTAAGGGTTGCAGCAGCAGGA
716 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGC---A
* * * * *
16037399 TGGGCAGCACACAGGGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCTCCTCTGGCCAGCT
778 --GGCAG-----A--GGGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTT
* *
16037464 GGGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
834 GGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16037499 GCATACGGAGTTCATTCCCAGCCTAAGATCGA-ATC-A-GACC-GAGGGTTACGGTAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGACAGCTAGGACCTGAGGGTTACGGCAGCACATGC
16037560 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-G-G-------G
66 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCG
* * * *
16037616 GAGAACCTGACCGGCGTC-TTTGGGTTCCTGCAATCGGGGGGTCGGGGGGGGTGTGCGCGCATGA
131 GAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGG-C-GGGGGGGTGTGCGCACATGA
* *
16037680 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
16037745 TCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTG
259 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
16037810 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * **
16037875 TTTGTGCACGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCTAA
389 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
16037940 AAAAATTTTAAAAAATCCCGAACTGCAAAAATTTTTAAAAATCATGAAAAATAGGAAACGAGTCG
454 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16038005 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16038070 AGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
16038135 TGCGTATCCCGTCTCTC-AGCCTGCGTAGT----GCCCGCCCG--C-C-CGCTCGTTTCGTCGGT
649 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCGTCGGT
* * * *
16038191 TGGCTTAGGCATATGGATTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGCAGCAGG
714 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTT--GCAGC---
* * * * * **
16038256 ATGGACAACACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGAC
774 A--G----CAGGCAGAGGGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGT
* * * *
16038321 TGCGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAG
833 TGGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
16038357 GCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---ATTGACAG-CT---A--GGACCTG--
** ** *
16038422 CAAGGGTTGTGGCAGCACATGCTACGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCGTCGGGG
46 --AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
16038487 CACCATCACCGGAGCATCGCCGGAGAACCTAACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGT
109 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGG-
16038552 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
173 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16038617 CCCTCATTAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
238 CCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
*
16038682 CAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
303 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
16038747 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
368 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
16038812 TGGGGACAAAAATCCTTCTGAAAAAATTTAAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCA
433 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
16038877 TGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
498 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
16038942 GAATTTACAAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACTCACCTA
563 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* **
16039007 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTTCGC
628 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
16039072 CTGC-CAACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
693 CCGCGC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
16039136 GGACCAAGGGTTGCGACAGTAGGATCGACAGCACGTAGAGGGGGACCC-GATCGATCCCCGGCTT
757 GGACTAAGGGTT--G-C------A--G-CAGCAGGCAGAGGGGGACCCAG-TCGATCCCCGACTT
* * * * * *
16039200 GTGCATCCCACCCCTCTGGGCTGTTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAG
809 GTGCATCCCGCCCCTCTGGCCGGTTGGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16039260 GCATACGGAGTTCATTCCTAGTCTAAGGATACAGAGTTCATTCCCAGTCTAAGATTGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTC------TA-AGA-TTGA----CAG-CT-AG---G-A-C---C
* * * * * * ** *
16039325 TGAGGGTTGCGCCAGCACATGCTGGGCTCAGGCATGAGCTGGTGCCACATTTTTTTTCACCGGCG
44 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** ** * *
16039390 CACCATCGTCAGAGCATCGTCGGAGAACCTGACTTGCGGCATTGGGGTTCCGGTGATCGGGGGGC
109 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGC
* *
16039455 GGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATC
174 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
16039520 CCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
239 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
*
16039585 AGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
304 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * ** * **
16039650 CGAGTTTTTAGCTGAATTATTTTGTGCATACCAGCAAAAATACAAGGATTACGTCTATGAAGTTT
369 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** *
16039715 GGGGCCAAAACTGCTTCCGAAAAAATTTTAAGAAAATCCCAAACCGTAAAAAGTTTTGAAAATCG
434 GGGGCCAAAACTCCTTCCGAAAAAATTTTAA-AAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
16039780 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTAT
498 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
16039845 GGATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
563 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * *
16039910 CCACCCTATCGATCTACGGCTTGCGCATCCTGTCTCTCTGGCCAACGTATTGCCCGCCTGCCCGC
628 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
16039975 CCACACGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCG
693 CCGCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* *
16040040 GACCAAGGGTTGCGGCAGCA
758 GACTAAGGGTTGCAGCAGCA
16040060 CATGCTGGGC
Statistics
Matches: 3814, Mismatches: 371, Indels: 250
0.86 0.08 0.06
Matches are distributed among these distances:
857 27 0.01
858 98 0.03
859 61 0.02
860 3 0.00
861 6 0.00
863 8 0.00
864 673 0.18
865 5 0.00
866 21 0.01
867 31 0.01
868 454 0.12
869 6 0.00
870 4 0.00
871 1 0.00
872 5 0.00
873 1 0.00
874 3 0.00
875 3 0.00
876 172 0.05
877 3 0.00
878 1 0.00
879 5 0.00
880 116 0.03
881 89 0.02
882 266 0.07
883 109 0.03
884 66 0.02
885 2 0.00
886 1 0.00
888 1 0.00
889 2 0.00
890 192 0.05
891 7 0.00
892 1 0.00
893 480 0.13
894 30 0.01
898 9 0.00
899 4 0.00
900 1 0.00
901 7 0.00
902 341 0.09
903 490 0.13
904 2 0.00
907 3 0.00
909 2 0.00
911 1 0.00
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGACAGCTAGGACCTGAGGGTTACGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCG
GAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCAGGC
AGAGGGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGGGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:16038386 original size:26 final size:26
Alignment explanation
Indices: 16038357--16038409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16038347 GTTGACTTAG
16038357 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
16038383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16038409 G
1 G
16038410 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:16039298 original size:26 final size:26
Alignment explanation
Indices: 16039262--16039312 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16039252 TGACTTAGGC
* *
16039262 ATACGGAGTTCATTCCTAGTCTAAGG
1 ATACAGAGTTCATTCCCAGTCTAAGG
16039288 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16039313 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:16039921 original size:903 final size:895
Alignment explanation
Indices: 16036623--16040059 Score: 4626
Period size: 903 Copynumber: 3.9 Consensus size: 895
16036613 GTTGACTTAG
* ** * ** *
16036623 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGATCACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*** * * * * * *
16036688 CAATGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCGCCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATC-GCGGAGA
* * * * *
16036753 ACCTGACTGGCGGCATTGGGGTTCCTGCGATCGGGAGG-CCGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* * *
16036817 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACA
193 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * ** *
16036882 ACCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCAACCACTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16036947 GGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16037012 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
* * * *
16037077 TTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * ** *
16037142 CCACGAAACTTCACGTGAAGGCTTAAGGGAACGCTGTATGAATTTACAAGCCAAAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
16037207 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGATCCATGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
16037272 ATCCCGTCTCTCTGGCCGGCGTAGTGCCAGACCGCCCAC-CCGCGTGCTCGTTTCGTCAGTTGGC
648 ATCCCGTCTCTCTGGCCAGCGTAGTG-C---CCGCCCGCGCCGC-CACTCGTTTCGTCGGTTGGC
* * * ** * *
16037336 TTAGGCGTACGGAGTTCAGTCTCAGTCTAAGATCAGACCAGACTAAGGGTTGCAGCAGCAGGATG
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGC-GCAGCAGGATC
* * * * ** * * * * *
16037401 GGCAGCACACAGGGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCTCCTCT-GGCCAGCTG
772 GACAACACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGGCGA-CTG
* * *
16037465 GGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-C---
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* *
16037521 -C-TA---AG---A-T--C-G----A-AT-----CAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16037564 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA--TC--GC--CGGGGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCATCGCGGAGAACC
* * * ** *
16037623 TGACCGGCGTC-TTTGGGTTCCTGCAATCGGGGGGTCGGGGGGGGTGTGCGCGCATGATGTGCAA
131 TGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCAA
*
16037687 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
16037752 CCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
16037817 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
16037882 ACGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCTAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATT
* * * *
16037947 TTAAAAAATCCCGAACTGCAAAAATTTTTAAAAATCATGAAAAATAGGAAACGAGTCGTCTTGCC
455 TTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
16038012 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16038077 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGTAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
16038142 CCCGTCTCTC-AGCCTGCGTAGTGCCCGCCCGC-CCG---CTCGTTTCGTCGGTTGGCTTAGGCA
650 CCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCGCCGCCACTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
16038202 TATGGATTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGCAGCAGGATGGACAACAC
715 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGCAGCAGGATCGACAACAC
* * * * *
16038267 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGACTGCGTGCCCGT
780 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGGCGACTGAGCGCCCGC
*
16038332 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
845 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * * * **
16038383 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16038448 CTCGGGCATGTGCTGTTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATCG-CGGAGA
* *
16038513 ACCTAACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* *
16038578 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACA
193 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16038643 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16038708 GGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16038773 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
* * *
16038838 TTTAAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTT
453 TTTTAAAAAATCCCA-AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
16038902 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16038967 TTGGCATGCAGAAATATGAAGATGTGCTTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16039032 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTTCGCCTGCCAACTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG--CGCC-GCC-ACTCGTTTCGTCGGTTGGC
*
16039097 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGACAGTAGGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCG-CAGCAGGATC
* * * *
16039162 GACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCACCCCTCTGGGCTG-TTG
772 GACAACACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGGC-GACTG
* * * *
16039226 AGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * * * *
16039286 GGATACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
16039351 CTCAGGCATGAGCTGGTGCCACATTTTTTTTCACCGGCGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCATCG-CGGAGA
**
16039416 ACCTGACTTGCGGCATTGGGGTTCCGGTGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* *
16039480 AATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACATCGAGAACTCACA
193 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16039545 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16039610 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** * * *
16039675 GCATACCAGCAAAAATACAAGGATTACGTCTATGAAGTTTGGGGCCAAAACTGCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
* * *
16039740 TTTTAAGAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 TTTTAA-AAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16039805 GCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16039870 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16039935 CATCCTGTCTCTCTGGCCAACGTATTGCCCGCCTGC-CCGCCCACACGCTCGTTTCGTCGGTTGG
647 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCGCCG--C-CA--CTCGTTTCGTCGGTTGG
* *
16039999 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGGTTGCGGCAGCA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCAAGGGTTGC-GCAGCA
16040060 CATGCTGGGC
Statistics
Matches: 2258, Mismatches: 221, Indels: 115
0.87 0.09 0.04
Matches are distributed among these distances:
858 114 0.05
859 66 0.03
863 11 0.00
864 2 0.00
866 21 0.01
867 30 0.01
868 454 0.20
870 3 0.00
871 1 0.00
873 2 0.00
874 1 0.00
876 63 0.03
878 1 0.00
879 2 0.00
881 2 0.00
882 1 0.00
884 67 0.03
886 1 0.00
887 2 0.00
889 1 0.00
890 3 0.00
892 4 0.00
893 479 0.21
894 39 0.02
896 3 0.00
897 3 0.00
898 1 0.00
899 1 0.00
900 2 0.00
901 3 0.00
902 341 0.15
903 529 0.23
904 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCATCGCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCGCCGCCACTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGCAGCAGGATCGACAACACG
CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGGCGACTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
Found at i:16040769 original size:707 final size:705
Alignment explanation
Indices: 16039288--16041473 Score: 3313
Period size: 707 Copynumber: 3.1 Consensus size: 705
16039278 TAGTCTAAGG
* * * *
16039288 ATACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCGCCAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
16039353 CAGGCATGAGCTGGTGCCA-CATTTTTTTTCACCGGCGCACCATCGTCAGAGCATCGTCGGAGAA
66 CGGGCATGAGCTGGTG-CAGCATTTTTCTTCACCGGGGCACCA---TC---G---C--CGGAGAA
** *
16039417 CCTGACTTGCGGCATTGGGGTTCCGGTGATCG-GGGGG-CGGGGGGGTGTGCGCACATGATGTGC
119 CCTGACCGGC-GCATTGGGGTTCCGGCGATCGAGGGGGTC-GGGGGGTGTGCGCACATGATGTGC
* * * *
16039480 AATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACATCGAGAACTCACA
182 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * * * *
16039545 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATG-AAAT
247 CATCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGT-CGAAAAT
*
16039609 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
16039674 TGCATACCAGCAAAAATACAAGGATTACGTCTATGAAGTTTGGGGCCAAAACTGCTTCCGAAAAA
376 TGCATACCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
* *
16039739 ATTTTAAGAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
441 ATTTTAA-AAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
16039804 TGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
504 TGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
*
16039869 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGC
569 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
16039934 GCATCCTGTCTCTCTGGCCAACGTATTGCCCGCCTGCCCGCCCACACGCTCGTTTCGTCGGTTGG
634 GCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGGTTGG
16039999 CTTAGGC
699 CTTAGGC
* * *
16040006 ATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
16040071 TGGGCATGCGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCAG
66 CGGGCATGAGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGC-G
16040136 CATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
130 CATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
16040201 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAAGAG
16040266 CATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCGAAAATGGGGACACTTTTTT
260 CATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCGAAAATGGGGACACTTTTTT
* *
16040331 CAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
325 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAA
*
16040396 AATAAAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCC
390 AATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCC
*
16040461 CGAACAGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACA
455 CGAACCG-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACA
* *
16040526 CGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTAGCACGTAGAAA
519 CGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
16040591 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
16040656 GGCCAACGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGC
649 GGCCAACGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
16040713 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * ** * *
16040778 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGCCGGAGAACCTGACCGACGA
66 CGGGCATGAGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCG-
* *
16040843 CATTGGGGTCCCGACGATCGA-GGGGTCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
130 CATTGGGGTTCCGGCGATCGAGGGGGT-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
16040907 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAAGA
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAAGA
*
16040972 GCATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCAAAAATGGGGACACTTTTT
259 GCATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCGAAAATGGGGACACTTTTT
* * *
16041037 TGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATTCCAACAA
324 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAA
* * * * ** * *
16041102 AAATACAAGGATCACGTCTACCAATTTTGGCGCTAAAAGAGGATTTCTGAAAAAATTTTAAAAAA
389 AAATACAAGGATTACGTCTACCAAGTTTGGGGC-CAAA-ACTACTTCCGAAAAAATTTTAAAAAA
* * * *
16041167 TCCTGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
452 TCCCGAACCGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTA
* *
16041232 CACGTGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
16041296 AATATGAAGATGTGCCTAAACCCTCCTACCACCTTATCGATCCACGGCTTACGCATCCCGTCTCT
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * * * *
16041361 CAGGCCGACGTAGTGCCCACCCGCTCGCCCGCCCACTCATTTCTTCGGTTGCCTTAGGC
647 CTGGCCAACGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *
16041420 ATATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGACAGCA
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
16041474 GGATCGGTAG
Statistics
Matches: 1357, Mismatches: 103, Indels: 27
0.91 0.07 0.02
Matches are distributed among these distances:
706 6 0.00
707 879 0.65
708 343 0.25
709 32 0.02
712 1 0.00
715 2 0.00
717 2 0.00
718 92 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGAGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCGC
ATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAAGAGC
ATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCGAAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAA
ATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCC
GAACCGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACG
TGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCAACGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGC
Found at i:16043394 original size:26 final size:26
Alignment explanation
Indices: 16043358--16043410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043348 GTTGACTTAG
16043358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
16043384 GCATATGGAGTTCCTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16043410 G
1 G
16043411 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16043469 original size:891 final size:891
Alignment explanation
Indices: 16040711--16044114 Score: 4455
Period size: 891 Copynumber: 3.8 Consensus size: 891
16040701 GTTGGCTTAG
* * * *
16040711 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16040776 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGCCGGAGAACCTGACCGAC
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
16040841 GACATTGGGGTCCCGACGATCGAGGGGTCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
130 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
* **
16040905 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * **
16040970 GAGCATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTCAAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
16041035 TTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATTCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *** * *
16041100 AAAAATACAAGGATCACGTCTACCAATTTTGGCGCTAAAAGAGGATTTCTGAAAAAATTTTAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-A-TCCTTCCGAAAAAATTTAAAAA
*
16041165 AATC-CTGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AATCTC-AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16041228 ACTTCACGTGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
16041292 CAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCTTATCGATCCACGGCTTACGCATCCCGT
581 CAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * ** * * *
16041357 CTCTCAGGCCGACGTAGTGCCCACCCGCTCGCCCGCCCACTCATTTCTTCGGTTGCCTTAGGCAT
646 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
* * *** * * * * * *
16041422 ATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCAT
711 ACGGAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGATTGCGGCAGCAGGATCGGCAACAC
* * * * *
16041487 G-TAGAGGGGGACCCGACCGATCCCC-GACTTGCGCATCCCGGCCCTCTGGTCGGTTGAGCACCC
776 GCT-GAGGGGGACCCGATCGATCCCCAG-CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
16041550 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT----
839 ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
* *
16041599 -C-TA---A---CA-T--C-G-----GA-C---TGGACCGAGGGTTGCGGCAGCACATGCTAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
16041643 TCGGGCATGTGCTGGTGCCATATTTCTCTTCATCGGGGTGCCATCACCGGAGCACCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC-GGG-G----CA-C----CATCGTCGGAGAA
* * * * *
16041708 CCTGACCGACGGCATTGGGGTCCCGACGATCGAGGGGGCCAGGG-CGGTGTGCGCACCTGATGTG
120 CCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGTGGGTGTGCGCACATGATGTG
*
16041772 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16041837 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTACCCATTAAAGTGTCAGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16041902 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTACGAGTTTTTAGCTGAA-TTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16041966 TGCATGCCAACAAATATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAACTCCTTCCGAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAA
* ** *
16042031 AATTTAAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
442 AATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** *
16042096 TGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCAATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16042161 ATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTCTTGATCCACGGCTTGC
572 ATTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
16042226 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCCCGTCTGGCCGCTCGT
637 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCACCCGT-T---CG-T--T
* * * ** ** * *
16042291 GTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCACATCGGATTGTGGGTTG
691 -TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGATTG
* * * * *
16042356 CGGTAGTAGGATCGGTAACACGCTGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGTCCC
755 CGGCAGCAGGATCGGCAACACGCTGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCGCCCC
* *
16042421 TTTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
820 TCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
16042486 AGTCCAA
885 AGTCCAA
* * * *
16042493 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16042558 CTCGAGCATGTGCCGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGC
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
16042623 GGCATTGGGGTTCCGGCGATCGGGGAGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 GGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
**
16042688 GAAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
16042752 GAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TT
*
16042817 TTGT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
16042881 AAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CAAAAATCCTTCCGAAAAAATTAAAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAA
* *
16042945 AACTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
453 ATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
16043010 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * ** *
16043075 GAAATATGAAGATGTGCCGAAACCCACCTAGCACCCTATCGATGCATGGCTTGTACATCCCATCT
583 GAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * **
16043140 CTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCTCCCGTTCGTTTCGTCAGTTTTCTTAGGCATAC
648 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
16043205 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGATTGCGGCAGCAGGATTGGCAGCACG-
713 GGAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGATTGCGGCAGCAGGATCGGCAACACGC
* * * * * *
16043269 TAGAGGGGGGCCCGATCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCA
778 T-GAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACA
*
16043334 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
* * * ** *
16043384 GCATATGGAGTTCCTTCCTAGTCTAAGATCGGATCGGGTCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
16043449 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCT-AGCCGG
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGA-CCGG
** * * *
16043513 CGAAATTGGGGTTTCGGCGATCGGGGGGCC-GGTGGGGTGTGCGCACAGGATTTGCGATGGGTGC
129 CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGT-GGGTGTGCGCACATGATGTGCGATGGGTGC
* *
16043577 TGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
16043642 AGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16043707 TTTTCAAATGGTCACAAAATCTTATAC-CTTCGAGTTTTTAGCTG-ATTTCTTTTGTGCATGCCA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCA
* * * * *
16043770 ACAAAATTACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAA
* *
16043835 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAA
452 AATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
16043900 CTACATGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
16043965 AGAAATATGAAAATGTGCCTAAACCC-CCTTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
582 AGAAATATGAAGATGTGCCAAAACCCACC-TACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * *
16044029 CTCTCTGGCCAACGTAGTGCGCGCCTGCCCGCCCACACGCTCGTTTCGTCGGTTGGCTTAGGCAT
646 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
16044094 ACGGAGTTCATT-CCAGTCTAA
711 ACGGAGTTCATTCCCAGTCTAA
16044115 CCATATGGAG
Statistics
Matches: 2219, Mismatches: 230, Indels: 132
0.86 0.09 0.05
Matches are distributed among these distances:
866 56 0.03
867 3 0.00
868 1 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 1 0.00
876 27 0.01
877 169 0.08
878 317 0.14
879 1 0.00
880 3 0.00
881 2 0.00
882 14 0.01
883 2 0.00
886 3 0.00
887 2 0.00
889 8 0.00
890 336 0.15
891 661 0.30
892 1 0.00
894 1 0.00
895 3 0.00
896 2 0.00
898 1 0.00
899 17 0.01
900 2 0.00
901 1 0.00
902 2 0.00
903 214 0.10
904 119 0.05
905 179 0.08
906 1 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 1 0.00
914 1 0.00
915 3 0.00
916 56 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGGCGATCGGGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATC
TCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCACACCAAACCGAGGATTGCGGCAGCAGGATCGGCAACACGCTGA
GGGGGACCCGATCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
Found at i:16044125 original size:25 final size:26
Alignment explanation
Indices: 16044091--16044140 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16044081 TTGGCTTAGG
16044091 CATACGGAGTTCATT-CCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
16044116 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16044141 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16045912 original size:26 final size:26
Alignment explanation
Indices: 16045883--16045935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045873 GCTGACTTAG
*
16045883 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
16045909 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16045935 G
1 G
16045936 ATTTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16045976 original size:905 final size:901
Alignment explanation
Indices: 16044058--16059569 Score: 18814
Period size: 905 Copynumber: 17.3 Consensus size: 901
16044048 CGCGCCTGCC
* * * * *
16044058 CGCCCACACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAACCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16044122 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCCGCAAG-ACATGCTGGGCTCGAG
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGC-AGCACATGCTGGGCTCGGG
* ** *
16044186 CATGTGCTGGTGTCATATTTTTCTTCACCGAGGCACCAT---C---G-----TCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * * ** * *
16044240 TCGACGGGATTGGGGTCCCAACGATCGAGGGGGCCGAGAGGTGTGCGCACATGATGTGCGATGGG
195 -CGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * **
16044305 TGCTAGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACATCCT
258 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16044370 TAAAGAGCATTTGAGATTTTACAGATTTGCTGCTAGTACCCATTAAAGTGTC-GAAAATGGGGAC
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGAC
* * *
16044434 ACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATT
387 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * **** *
16044499 CCAACAAAAATACAAGGATGACGTCTACCAACTTTGTGGCTAAAAGAGGATTTCTGAAAAAATTT
452 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAA-ACTCCTTCCGAAAAAATTT
* **
16044564 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
515 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
16044629 TGAAACTTCACGTGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16044693 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATC
645 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
16044758 CCGTGTCTCTGGCCGGTGTAGTGC-CCG--C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
710 CCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * *
16044819 GGATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGA-TCGAGGGTTGTGGCAGCAGGATCGAC
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGC
* * * * *
16044883 AGCATGCAGAGGGGGACTC-AGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCTGCTGAG
839 AGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16044946 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16045011 GAGTTCATTCCCAGTCTCAGATCAGA-CTGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * *
16045075 CATGTACTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGAAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * * * * * * * *
16045140 CTGGAGACATTAGGGTTCCGGTGATCGGGCGGGCTGAGGGGTGTGCACACATGATGTGTGGTGGG
195 C-GGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
16045205 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
258 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
16045270 TAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
16045335 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
388 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16045399 GAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
16045464 AAAATCCCGAACCGTAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
518 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * **
16045529 AACTTCACGTGAAGGCTTGAGGGACTATTGAATGAATTTACTGGCCATAAAAATGGCATTGGCAC
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
16045594 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTG
648 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
16045659 TCTCTCTGGCCGACGTACTGCCCGCCGCCCGCCAGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
713 TCTCTCTGGCCGGCGTAGTG--CGCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * *
16045724 GCATACGAAGTTCATTCCCAGTCTAAGATTGGGCCGGACTGAGGGTTGCGGCAGCAAGATCGACA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
16045789 GCGCGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAG
840 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * **
16045851 TGCCCACATGCTCGTTCCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** *
16045916 GAGTTCATTCCCAGTCTAAGATTTGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
16045981 ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCAT---C---G-----TCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
16046035 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
16046100 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
16046165 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* ** *
16046230 TTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTACGCACGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
16046295 AACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAGAACTCCTTTCGAAAAAATTTAAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
16046360 AAATCTCGAACCGTAAAAAGTTTGAAAAAT-AGTGAAAAATAGAAAACGAGTTGTCTTGCCATGA
519 AAATCTCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
16046424 AACTTCATGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAG
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
16046489 GCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGAACCAC-GCTTGCGCAGCCCG
648 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
16046553 TCTCTCTGGCCGGCGTAGTGC-CCGCCCGCCTGCCCGGCCACTCGTTTCGTCAGTTAGCTTAGGC
713 TCTCTCTGGCCGGCGTAGTGCGCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * *
16046617 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGTAGC
777 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * *
16046682 ATGTAAAGGGGGACCCG-CCGATCCCTGGCTTTCGCATCCCGCACCTCTGGCCGGTTGAG
842 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16046741 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
16046806 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGACCGAGGGT
66 GAGTTCATTCCCAG--T---C-TA---AG---A-T--C------AGAT-----CAGACCGAGGGT
* * * * ** *
16046871 TGCAGCAGCACATGTTGGGCCCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACGATC
105 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* * * *
16046936 GCCGGAGCATCGTCGAAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGCGGGTCGGGGG
170 GCCGGAGCATCATCGGAGAACCTGAC-GGCGGCATTGGGGTTCCGGCGATCGGG-GGG-C-CGGG
* *
16047001 GGGTTTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTC
231 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16047066 ATCAAACCTTC-TGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
296 ATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
16047130 AGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
360 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
16047195 GTTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
425 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
16047260 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCGAAAATCATGAA
490 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
16047325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
555 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
16047390 TGACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAT
620 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * ** *
16047455 CCTATCGATCCACGGCTTGTGCATCCCGTCACTCTGGTCGGCGTAGTGC-CTTCCCGCCTACCCG
685 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCC-GCCCG
* * * * *
16047519 TCCGCTTGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGAC
749 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * ** * * * * *
16047584 CGAGGGTTGCGGTAGTAGGAAT-GATAGCACGTAGAGGGGGACTCGATCGATCCCCGACTTACGC
814 TGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * *
16047648 ATCACACCCCACTGGCCGACTGAG
878 ATCCCGCCCCTCTGGCCGGCTGAG
* *
16047672 TGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
16047737 AAGTTCATTCCCAGTCTAAGGTCGGA-CCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCAGATCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * **
16047801 CATGTGCTGGTGACGTATTTTTCTTCACCGGGGCACCATCGCCGGAG-A--A-C-TTG-A-C---
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* *
16047856 CGGCGGCATTGGGGTTCTGGCGATC-GGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
195 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
16047920 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
16047985 AAGAACATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
16048050 CTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTCCATCCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * **
16048115 ACAAAAATACAAGAATCATGTCTACAAAGTTTGGGGCCAAAAAGCCTTCCGAAAAAATTTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * ** * * *
16048180 AATCCCAAACCGCAAAAAATTTTGAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAA
520 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
16048245 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
16048310 AGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
650 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *** * ** *
16048375 TCTCTGGTCAATGTAGTGCCCTCCCGCCCGTCCACCCGTCCACCCGTCCACCCGCTTATTTTGTC
715 TCTCTGGCCGGCGTAGTG------CG-CCG----CCCG-CCGCCCG----CCCGCTCGTTTCGTC
** *
16048440 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAG
764 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
* * * * * * * * * *
16048505 TAGGATTGGCAGCACACAGAAGGGGACCCGACCGATCCTCGACTTACGCATCTCACCCCACTGGC
829 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
16048570 CGACTAAG
894 CGGCTGAG
* * *** * ** * *
16048578 CGCTCGCATGCTCGTTTCGTAATTTGACTTGGGCATATTGAGTTCATTCCCAATCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16048643 GAGTTCATTCCCAATCTAAGATTAGATCAGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * **
16048708 ATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* ** * * * * ** *
16048762 TGACGAAATTGGGGTTTCGGTGATCAGGGGGCCAGGGGGTGTGCGCACATGATAAGCGATGGATG
196 -GGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
16048827 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATAAAATCGCGAGAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
16048892 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16048957 CTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * * *
16049022 ATAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCATTCCGAGAAAAGTTAAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
16049087 AATCTCAAACCGTACAAAGTTTCAAAAATCATGAAAAATA-AAAATTGAGTCGTCTTGCCATGAA
520 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAA
** * * **
16049151 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTGTAAAAGTGCCATTGGTGCG
584 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
16049216 TAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
649 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * * * * *
16049281 CTCTCTGGTTGACATAGT--G-CTCTC-CCG--CG--CACTTGTTTTGTCGGTTGGCTTAGGCAT
714 CTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
16049338 ACGGAGGTCATTCCCAGTCTAAGATC-GAACCAGATTGAGGGTTGTGGCAGTAGGATCGGTAGCA
779 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
16049402 CACAGAGGGGGACCC-AGCCGATCCCCAGCTTACGCATCTCACCCCACTGGCCGGCTTAG
843 CGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *** * * *
16049461 CGCTCGCACGCTCGTTTCATAATTTGACTTGGGCATACGGAGTTCATTCCCAATCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16049526 GAGTTCATTCCCAATCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGG
66 GAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** *
16049590 AATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAGCGCC---G-A--A----A-AACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * * * *
16049644 CCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGTGTGCGCACATGATGAGCGATGGG
195 -CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
16049709 TGCTGGTACTTAGCCCTTATATTGGTCCCCTATCCCACATCAAACCGT-GAGAACTCACACCCCC
258 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCC
* * *
16049773 TTAAAGAGCATTTGAGATTTTACAGGTTTGGC-GCCAATAGCAATTAAAGTGCCTGAAATGGGGA
322 TTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
16049837 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
16049902 GCCAACAAAAATACAAGGATCACGTCTGCCAAG-TTGCGGGCC-AAACTCCTTCCGAAAAAATTT
451 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * *
16049965 T-AAAAATCCCGAATCGTAAAAAGTTTTAAAAAATTATGAAAAAATAGAGAAAATGAGTCTTTCT
515 TAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATG-AAAAAT--AGAAAACGAGTC-GTCT
* *
16050029 TG-CATGAAACTTTCACGTTAAGGGCTTAAGGGA-CATT-TATTAATTTACAAGCC-TAAAAATG
575 TGCCATGAAAC-TTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-
* *
16050090 GGCATTGGCACGCAGAAGTATGAAGATGTGCTTAAACCCACCTACCCACCCTATTCGATCC-CGG
637 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTA-TCGATCCACGG
* * * *
16050154 CTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGC-CCG-CCG-C-CCGGCCCGCTCCTTTCGTCA
700 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCG
* * * *
16050214 GTTGGCTTAGGCGTACGGAGTTCCGATTCCCCAGTCCTAAGATGA-AAC-GAC-GAGGG-TACGG
765 GTTGGCTTAGGCATACGGAGTT-C-ATT-CCCAGT-CTAAGATCAGACCAGACTGAGGGTTGCGG
* ** * * *
16050275 CAGCAAGATCGATAGCACGCAGAGGGGGACCCGATCGATCTCCGGCTTGCGCATCCCACCCCTCT
826 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
16050340 GGCCGGCTGAG
891 GGCCGGCTGAG
* ** * * * *
16050351 CGCCCGCACACTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGTATAGG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
16050416 GAGTTAATTCCCAATCTAAGATCAGATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
16050481 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACATGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* *
16050546 CGGCCGCATTGGGGTTCCGGCGATCGAGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
16050611 GCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTG
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* **
16050676 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATTC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
16050741 TTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
16050806 AAAAAAAAATACTAGGCTCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAAGTTTAA
454 -AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
16050871 AAAATCTTGAACCGCAAAAAGTTTTC-AAAATCATGAAAAATAGGAAACGAGTCGTCTTGCCATG
518 AAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
16050935 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
582 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
16051000 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCC
647 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
16051065 GTCTCTCT----GGC----T------------G---G--CGCTCATTTCATCGGTTGGCTTAGGC
712 GTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
16051105 ATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTACAGCAGCAGGATTGGCAG
777 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * *
16051169 CATACAGAGTGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTATGGCCAGCTGAG
841 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
16051230 CGCTCTCACGTTCCTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * *
16051295 GAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGCATTGCGGCAGCACATGCTAGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * * *
16051360 ATGTGCTGGTGCCGCATTTTTCTTCTTCAGGGCACCATCGTCGGAGCATTACCGGTGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* * * * * *
16051425 CGGCCGCATTGAGGTTCCGACGATCGGGGGGGCCAGGGGGTGGGCACACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
16051490 GCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAACCCCC-
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCT
* * *
16051554 TAAAGAGCGTTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
16051619 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTATTAGATGAATTTTTTCATGCATGC
388 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16051684 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTTCGAAAAAATTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * **
16051748 AAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
518 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
16051813 AACTTCAAGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATTAAAAA-GGAATTGGCA
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCA
* * * * *
16051877 TGTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTCTCGATCCACGGCTTGCGCATCCT
647 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * *
16051942 GTCTCTCTGGCCGGCGTAGTGC-CCGCCCGCCCGCCAACCCGCTCGTTTTGTCGGTTTGCTTAGG
712 GTCTCTCTGGCCGGCGTAGTGCGCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * **
16052006 CATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATTGAGGGTTGCGATAGCAGGATCGGCAG
776 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* *
16052071 CACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAG
841 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16052132 CGCCCGCACGCTCGTTTCGTTGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16052195 GA---C--T----G-----GA-C---T------GAGGGTTACGGCAGCACATGCTAGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
16052236 ATGTGCTAGTGTCGCATTTTTCTTCACCGGCGCACCATCGCCAGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* * * * ** *
16052301 CGACTGCATTGAGGTTTCAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGT
195 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
16052366 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTC-AAAACTCAAACCCCCTG
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
16052429 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
16052494 TTTTTTTGAAATGGTCACAAAATCTTTTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
389 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * * *
16052559 CAACAAAAGTACGAGGATCATGTCTACCAAGTTTTGGGCCAAAATTCTTTCCGAAAAAAGTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * * * *
16052624 AAAATC-CTGAA-C-TACAAAATGTTTTGAATATCGTGAAAAATAGAAAACAAGTCATCTTGCCA
518 AAAATCTC-GAACCGTA-AAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
16052686 TAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAGTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16052751 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATC
645 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
16052816 CCG--TCTCTGGTCGGCGTAGTGC-CCGTCCGCCTGTCCGCCCACTCATTTCATCGGCTGGCTTA
710 CCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
16052878 GGCACACTGAGTTCATTCCCAGTCTAAGATC-GAGCCAGACCGAGGGCTACGGCAGTAGGATCGA
774 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * ** * *
16052942 CAGAACGCAGATGGGGACCC-AGTCGATCCCCGACTTGCTCGTCTTGCCCGTCTGGCCGGTTGAG
838 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
16053006 CGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTC----G-TG-----GG--T--TGA---C-TT---AG-----GCATACG
* * *
16053071 GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
40 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGT
* * * * * *
16053136 TACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGACACATTTTTCTTCCCCGGGGCACCATC
105 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
*
16053201 GCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGAT
170 GCCGGAGCATCATCGGAGAACCTGA-CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGG--
* * * **
16053266 GGGCGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTGTC
231 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
16053331 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTA
296 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
16053396 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACATCGAG
361 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
16053461 TTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGG
426 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * * *
16053526 CCAAAATTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAGAGTTTCAAAAATCGTGAAA
491 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
* * *
16053591 AATAAAAAACTAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
556 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* **
16053656 TACAAGCCATAAAAATGGCAGTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
621 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
16053721 CTATCAATCCACGGCTTGTGCATCCTGTCTCTCTGG-CAGCGTAGTGC-CCG--C-CCGCCCGCC
686 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCC
* * * ** * *
16053781 TGTTCGTTTCGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
751 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * * * ** *
16053846 AGGGTTGTGGTAGTAGGATCGACAGCATGCAGACGGGGACCCGACTGATCCCCATCTTGCACATC
816 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
*
16053911 CCGCCCCTCTGGCCGGTTGAG
881 CCGCCCCTCTGGCCGGCTGAG
* * *
16053932 TGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** *
16053997 GAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTTCGATAGCACATGCTAGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * * * *
16054061 ATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCACCGGAGCATCGTTGGAGAACCTAAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* * *
16054126 CGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
195 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** *
16054191 CTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
16054256 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
16054321 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT-TG--TG---
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
16054379 -CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
16054443 AATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAA
520 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
16054508 CTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
16054573 AGAAATATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCATGACTTGCGCATCCCGTC
650 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16054638 TCTCTGGTCGGCGTAGT-----G--C-CCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATA
715 TCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
16054695 CGGAGTTCATTCCCAGTCTAAGATCAAACCAGAATGAGGGTTGCGGCAGCAGGATTGGCAGCATG
780 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * *
16054760 CAGAGGGGAACCCGACCGATCCCCGACTTACGCATCCCGCCCCTTTGGCCGACTGAG
845 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * **
16054817 CGCCCGCATGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAAGTGTACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16054882 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * ** * * * * *
16054947 ATATGTTAGTGCCATATTTTTCTTCACTGGGGCACCAACACCGGAGCATC-GCTGGAGAACTTGA
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATC-GGAGAACCTGA
* * * *
16055011 CCGGCGACATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGAGATGG
195 -CGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
16055076 GTGCTGGTACTT-GCCCTTATATTGGCTCCCTATCCCTGATCAAACCTCGAGAACTCACACCCCC
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
16055140 TTAAAGAGCCTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGAGAC
322 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
16055205 ACTTTTTTCAAATGGTCACAAAATCTTGTACACCTGGAGTTTTTAGCTGAATGTTTTTGTGCATG
387 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16055270 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTA
452 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
16055335 AAAAATCTCGAACCGTAAAAAGTTTTAAAAAT-ATTGAAAAATAGAAAACGAGTCGTCTTGCCAT
517 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
16055399 GAAACTTAACGTGAAGGCTTAAGGGACCATTGTATCAATTTAGAAACCATAAAAATGGCATTGGC
581 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
16055464 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCGACGGCTTGCGCATCC
646 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *** *
16055529 CGTCTCTCTGGCCGGCGTAGTGC-CCGCCTGCCCGCTCGTTTGCTCGTTTCGTCGGTTAGCTTAG
711 CGTCTCTCTGGCCGGCGTAGTGCGCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * ** * *
16055593 GCACACGGAGTTCATTCCCAGTCTATGATTGGACCGGACTGAGGGTTGCGATAGCAGGATTGGTA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * ** * * *
16055658 GAACGCAGAGGGGGACTCGGTCGATCCCCGGCTTACACAT-CC-CCCC-GTGGCCGGCTGAG
840 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
16055717 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16055774 -AG---A-T--C-G-----GATC-G----GACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGAC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * **
16055821 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGACCATCGCCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* *
16055886 CGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
195 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
16055951 CTGGTACTTGGCCCTTATATTGGCCCTCTGTCCCTCATCAAACTTTGAGAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
16056016 AAGAGCATTTGAGATTTTACAAGTTTGCTGACAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16056081 TTTTTCAAATGGTCACAAAATCTTGTACACTCCGTGTTTTTAGCTGAATTTTTTTATGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
16056146 ATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * **
16056211 AATCTCAAACCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
520 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
16056276 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGA
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
16056341 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
650 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16056406 TCTCTGGCCGGCGTAGTGC-CCGCCCGCCCGCCCGTCCGCTCATTCCGTCGGTTGGCTTAGGCAT
715 TCTCTGGCCGGCGTAGTGCGCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
16056470 ACGGAGTTCATTCCCAGTCTAATAACAGACCAGACTGAGGGTTGTGACAGTAGGATTGACAGCAT
779 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * *
16056535 GCAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCC-CTGGCTGGCTGAG
844 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16056592 CGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16056657 GAGTTCATTCCTAGTCTAAGATCAGA-CTAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGG
66 GAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* ** * *
16056721 CATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * * *
16056786 CCGACAGCATTAGGGTTCCAGCGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGCGAT
195 -CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGAT
* ** * *
16056851 GGGTGCTGGTATTTGGCCCTTATATTGAACCCCTATTCCTCATCAAACCTCGAGAACTCACACCT
255 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
16056916 TCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
320 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
16056981 ACACTTTTTTCAAATGGTCACAAAATCTTG-ACCACTTGGAATTTTTAGCTGAATTTTTTTGTGC
385 ACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
16057045 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATT
449 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
16057110 TAAAAAAATCCCGAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
514 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16057175 ATGAAACTTCATGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTG
579 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16057240 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
644 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
16057305 CCCGTCTCTTTGGCCAGCGTAGTGCCCGCCCGCCCGCCTGCTTGCCCGCCCGCTCGTTTCGTCGG
709 CCCGTCTCTCTGGCCGGCGTAGTG--CG-CCGCCCG-C--C--GCCCGCCCGCTCGTTTCGTCGG
* * * * *
16057370 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA-CTAGACCGGACTGAAGGTTACAGCAGC
766 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGCGGCAGC
* * * * * *
16057434 AAGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGTC
830 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
16057499 AGCTGAG
895 GGCTGAG
*
16057506 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
16057571 GAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTGCGGCAACACATGCCGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16057636 ATGTGCTGGTGCCGCATTTTTCTTCCCCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
* * *
16057701 TGGCGGTATTAGGGTTCCGACGATCGGAGGGGCCGGGGGAGTGTGCGCACATGATGTGCGATGGG
196 -GGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGG
* * * * *
16057766 TTCTGGTACTAGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCC
258 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16057831 TAAATAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
16057896 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
388 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** * *
16057961 CAAAAAAAATACAAGGATCATGTCTAAGAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
16058026 AAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCTTCTTGCCATGA
518 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
16058091 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
16058156 GCAGAACTATGAAGATGT-ACTGAAACCTACCTACCACCTTATCGATCCACGGCTTGCGCATCCC
648 GCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** ** * *
16058220 GTCTTTCTGGTCGGAATAGT-----G--C-CCGCCCGCCCATTCGTTTCATCGGTTGGCTTAGGT
712 GTCTCTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * ** * ** * *
16058277 ATACGGTGTTCATTCCTAGTCTAAGATTGGAAC-GAACTGAGGGTTGTAGTATTAGGATTGACAG
777 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * ** * * *
16058341 CACACAGAGAGGGTCCCGGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAG
841 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16058402 CGCCCCCACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
16058467 GAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCACATGCTGGGCTTGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** *** * * *
16058532 ATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGCAGGAGCATCGTTGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-
* *
16058597 CGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGG
195 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGG
* * **
16058662 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTT
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
16058727 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
322 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
16058792 ACTTTTTTCAAATGGTCAC-AAATCTTG-ACCACTTCGAATTTTTAGCTGAA-TTTTTTATGCAT
387 ACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
16058854 GCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAGTCCTTCCAAAAAAATTA
451 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * * *
16058919 AAAAAAATCCCGAATCGTAAAAGGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
515 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
16058984 TGAAACTTCACGTGAAGGCTAAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
16059049 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
645 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** *
16059114 CCGTCTCTCTGGCTAGCGTAGTGC-CCGCCCGCCCGTCTGTCCGCCCGCCCATTCGTTTCGTCGA
710 CCGTCTCTCTGGCCGGCGTAGTGCGCCGCCCG-CCG-C---CCGCCCG--C--TCGTTTCGTCGG
* * * * *
16059178 TTGGCTTAGGCATACAGAGCTCATTCCCAGTCTAAGATCAGACTAGACTGAGGG-TACAGCAGCA
766 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
* * ** *
16059242 AGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCCCGCCCCTCTGGCCG
831 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
16059307 ACTGAG
896 GCTGAG
*
16059313 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16059378 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
16059443 ATGTGCTGGTGCCACATTTTTCTTC-CCTGGGGCACCATCACCGGAGCATCATCGGAGAACCTGA
131 ATGTGCTGGTGCCGCATTTTTCTTCACC-GGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA
* * *
16059507 CTGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGAGTGTGCGCACATGATGTGCGAT
195 C-GGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGAT
16059570 AGGAAAATAG
Statistics
Matches: 12744, Mismatches: 1496, Indels: 746
0.85 0.10 0.05
Matches are distributed among these distances:
872 40 0.00
873 562 0.04
874 342 0.03
875 147 0.01
876 409 0.03
877 235 0.02
878 16 0.00
879 498 0.04
880 8 0.00
881 6 0.00
882 21 0.00
883 343 0.03
884 257 0.02
885 215 0.02
886 198 0.02
887 223 0.02
888 360 0.03
889 113 0.01
890 815 0.06
891 123 0.01
892 16 0.00
893 17 0.00
894 298 0.02
895 517 0.04
896 796 0.06
897 264 0.02
898 158 0.01
899 230 0.02
900 435 0.03
901 368 0.03
902 244 0.02
903 148 0.01
904 32 0.00
905 827 0.06
906 300 0.02
907 462 0.04
908 8 0.00
909 15 0.00
910 24 0.00
911 283 0.02
912 500 0.04
913 127 0.01
914 210 0.02
915 1 0.00
916 72 0.01
917 1 0.00
918 1 0.00
919 1 0.00
921 2 0.00
922 4 0.00
925 2 0.00
926 264 0.02
927 43 0.00
928 69 0.01
929 724 0.06
930 234 0.02
931 116 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
GGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCGCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:16046809 original size:26 final size:26
Alignment explanation
Indices: 16046773--16046851 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16046763 GTTGACTTAG
*
16046773 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16046799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16046825 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16046851 G
1 G
16046852 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16047741 original size:26 final size:26
Alignment explanation
Indices: 16047704--16047756 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16047694 GTTGACTTAG
*
16047704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16047730 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16047756 G
1 G
16047757 GTCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16048412 original size:8 final size:8
Alignment explanation
Indices: 16048401--16048428 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
16048391 TGCCCTCCCG
16048401 CCCGTCCA
1 CCCGTCCA
16048409 CCCGTCCA
1 CCCGTCCA
16048417 CCCGTCCA
1 CCCGTCCA
16048425 CCCG
1 CCCG
16048429 CTTATTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.64, G:0.14, T:0.11
Consensus pattern (8 bp):
CCCGTCCA
Found at i:16049523 original size:26 final size:26
Alignment explanation
Indices: 16049493--16049545 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16049483 TTTGACTTGG
*
16049493 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16049519 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16049545 G
1 G
16049546 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16053074 original size:26 final size:26
Alignment explanation
Indices: 16053038--16053116 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16053028 GTTGAATTAG
* *
16053038 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16053064 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16053090 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16053116 G
1 G
16053117 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16054015 original size:25 final size:26
Alignment explanation
Indices: 16053964--16054015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16053954 GTTGACTTAG
*
16053964 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16053990 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16054015 G
1 G
16054016 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16054888 original size:26 final size:26
Alignment explanation
Indices: 16054852--16054901 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16054842 GACCTAGGCA
16054852 TACGAAGTTCATTCCCAGTCTAAGTG
1 TACGAAGTTCATTCCCAGTCTAAGTG
*
16054878 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16054902 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGTG
Found at i:16056663 original size:26 final size:26
Alignment explanation
Indices: 16056624--16056676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056614 GTTGACTTAG
16056624 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCTAGTCTAA
*
16056650 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCTAGTCTAA
16056676 G
1 G
16056677 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCTAGTCTAA
Found at i:16057574 original size:26 final size:26
Alignment explanation
Indices: 16057538--16057596 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16057528 GTTGACTTAG
16057538 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16057564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16057590 -CAT-CAGA
1 GCATACAGA
16057597 CCAGACCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16058470 original size:26 final size:26
Alignment explanation
Indices: 16058434--16058486 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058424 GTTGACTCAG
16058434 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16058460 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16058486 G
1 G
16058487 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16058836 original size:896 final size:894
Alignment explanation
Indices: 16055749--16059569 Score: 5092
Period size: 896 Copynumber: 4.2 Consensus size: 894
16055739 GTTGACTTAG
* * * *
16055749 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
16055814 CTCAGACATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
16055879 ACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCC-GGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16055942 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTGTCCCTCATCAAACTTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16056007 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGACAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16056072 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGTGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
16056137 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
16056202 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16056267 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16056332 TTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
16056397 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCATTCCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGTTCG-T--TT-CGTCGGTTGGC
* ** * * *
16056462 TTAGGCATACGGAGTTCATTCCCAGTCTAATAACAG-ACCAGACTGAGGGTTG-TGACAGTAGGA
707 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACGA-ACTGAGGGTTGCAG-CAGCAGGA
* * *
16056525 TTGACAGCATGCAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCC-CTGGCTGGCT
770 TTGGCAGCACGCAGAGG-GGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
* * *
16056589 GAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCTAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16056650 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *** * *
16056715 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGCAGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
16056780 ACCTGACCGACAGCATTAGGGTTCCAGCGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGATG
* ** *
16056845 TGCGATGGGTGCTGGTATTTGGCCCTTATATTGAACCCCTATTCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * *
16056910 ACACCTTCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16056975 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-ACCACTTGGAATTTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
16057039 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAA
387 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
16057104 AAAATTTAAAAAAATCCCGAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
16057169 CTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16057234 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16057299 GCGCATCCCGTCTCTTTGGCCAGCGTAGTGCCCGCCCGCCCGCCTGCTTGCCCGCCCGCTCGTTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-G--T----------TCGTTT
* * * * * *
16057364 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGACTAGACCGGACTGAAGGTTACA
696 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACGAACTGAGGGTTGCA
* * * * *
16057429 GCAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTC
761 GCAGCAGGATTGGCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTC
* * *
16057494 TGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
825 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
16057559 TCTAA
890 TCTAA
* * * *
16057564 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTGCGGCAACACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16057629 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
16057694 ACCTGACTGGCGGTATTAGGGTTCCGACGATCGGAGGGGCCGGGGGAGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16057759 CGATGGGTTCTGGTACTAGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16057824 ACCCCCCTAAATAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16057889 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* ** * *
16057954 TGCATGCCAAAAAAAATACAAGGATCATGTCTAAGAAGTTTGGGGCCAAAACTCCCTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16058019 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCTTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16058084 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
16058149 TTGGCATGCAGAACTATGAAGATGT-ACTGAAACCTACCTACCACCTTATCGATCCACGGCTTGC
585 TTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
16058213 GCATCCCGTCTTTCTGGTCGGAATAGTGCCCGCCCGCCCATTCGTTTCATCGGTTGGCTTAGGTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * ** *
16058278 TACGGTGTTCATTCCTAGTCTAAGATTGGAACGAACTGAGGGTTGTAGTATTAGGATTGACAGCA
714 TACGGAGTTCATTCCCAGTCTAAGATTAGAACGAACTGAGGGTTGCAGCAGCAGGATTGGCAGCA
* * ** * * *
16058343 CACAGAGAGGGTCCCGGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCC
779 CGCAGAG-GGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
16058408 CACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCTAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16058460 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *** * * *
16058525 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGCAGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
16058590 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * *
16058655 GTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
16058720 CACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16058785 TGGGGACACTTTTTTCAAATGGTCAC-AAATCTTG-ACCACTTCGAATTTTTAGCTGAA-TTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16058847 TATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAGTCCTTCCAAA
388 TATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * * * *
16058912 AAAATTAAAAAAAATCCCGAATCGTAAAAGGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
16058977 CTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCACTATATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16059042 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
16059107 GCGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCCCGTCTGTCCGCCCGCCCATTCGTTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCG-C---CCGCCCG----TTCGTTT
* * * * * *
16059172 CGTCGATTGGCTTAGGCATACAGAGCTCATTCCCAGTCTAAGATCAG-ACTAGACTGAGGG-TAC
696 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACGA-ACTGAGGGTTGC
* * * **
16059235 AGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCCCGCCCCT
760 AGCAGCAGGATTGGCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCT
* *
16059300 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
824 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
16059365 GTCTAA
889 GTCTAA
* *
16059371 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16059436 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCTGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
16059501 ACCTGACTGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGAGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
16059566 CGAT
195 CGAT
16059570 AGGAAAATAG
Statistics
Matches: 2554, Mismatches: 313, Indels: 97
0.86 0.11 0.03
Matches are distributed among these distances:
895 17 0.01
896 589 0.23
897 168 0.07
901 147 0.06
902 8 0.00
903 1 0.00
904 8 0.00
905 462 0.18
906 1 0.00
907 1 0.00
908 6 0.00
909 2 0.00
910 27 0.01
911 279 0.11
912 511 0.20
913 105 0.04
914 219 0.09
916 1 0.00
917 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATTAGAACGAACTGAGGGTTGCAGCAGCAGGATTGGCAGCACG
CAGAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16059375 original size:26 final size:26
Alignment explanation
Indices: 16059345--16059397 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16059335 GTTGACTTAG
16059345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16059371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16059397 G
1 G
16059398 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16059989 original size:26 final size:26
Alignment explanation
Indices: 16059953--16060005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16059943 GTTGACTTCG
* *
16059953 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATGCACAGTCTAA
16059979 GCATATGGAGTTCATGCACAGTCTAA
1 GCATATGGAGTTCATGCACAGTCTAA
16060005 G
1 G
16060006 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATGCACAGTCTAA
Found at i:16060882 original size:26 final size:26
Alignment explanation
Indices: 16060853--16060905 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16060843 GTTGACTTAG
* *
16060853 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATATAGAGTTCATTCACAGTCTAA
*
16060879 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATAGAGTTCATTCACAGTCTAA
16060905 G
1 G
16060906 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCACAGTCTAA
Found at i:16061674 original size:901 final size:902
Alignment explanation
Indices: 16059573--16063137 Score: 4886
Period size: 900 Copynumber: 4.0 Consensus size: 902
16059563 GTGCGATAGG
* *
16059573 AAAATAGAAAATGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
16059638 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
16059703 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCATAGTGCCCACCCGCCTGTCCG
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
16059768 CCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGATCAGAC
196 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGAC
* * * * * * *
16059833 CGAGGGTTACGGCAGTAGGATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCGCGGCTTGCGCA
261 CGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
** * * * *
16059898 TCCCATCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTCGGCATATGGAG
326 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAG
* * * *
16059963 TTCATTCCCAGTCTAAGCATATGGAGTTCATGCACAGTCTAAGATCGGACCGGACCAAGGGTTAC
391 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * *
16060028 AGCAGCACATGCTGGGCT-GCGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCAAC
456 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAAC
* * * *
16060092 GGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTTCGACGATCGGGGGAGCCGGGGGG-G
521 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
16060156 ATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
586 -TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
16060221 AACCTCAAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCA
650 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
16060286 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
715 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
16060351 TAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAAGATCATGTCTACTAAGTTT-GGGCCAA
780 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * * * *
16060415 AACTCCTTTCGAAAAAATTTTCAAAAATCCCAAACCGCAAAAGTTTTGAAAATCGTGA
845 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTAAAAATCATGA
*
16060473 AAAATAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*** *
16060538 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
16060603 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
** * *
16060668 GACGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGGACCAGAC
196 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGAC
* * * * **
16060733 CGAGGGTTACGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCTGCGGCTTGCGCA
261 CGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * **
16060798 TCCCGCCCCTCTGGCCGGCTGAGCGCTCACACATTCGTTTCGTGGGTTGACTTAGGCATATAGAG
326 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAG
* **
16060863 TTTATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGATTGGACCGAGGGTTGC
391 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * *
16060928 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCAAT
456 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAAC
* * * *
16060993 GGAGCATCGTCGAAGAACCTGACCGGCAGCATT-GGGTTCCGATGATCGGGGGGGCC-GGGGG-G
521 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* *
16061055 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTTATCAA
586 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16061120 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTTGAGATTTTACACGTTTGCTGCCAGTAGCC
651 ACCTCAAGAACTCACACCCCCTTAAAGAGCA--TTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
16061185 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
714 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16061250 TTATCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
779 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
*
16061315 AAACTCCTTTC-AAAATATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGA
844 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCATGA
16061374 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
16061439 TTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCAGCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * * * *
16061504 CCCCATCAATCCACGGCTTGCGCATCCCGTGTATCTGGTCGGCGTAATGCCTGCCCACCCGCCCA
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * * * ** * *
16061569 CCCGCTTGTTTCGTCGGTTGGCTTAGCCATACGAAGTTCATTCCCCGTTTAAGATCCGATCAGAT
196 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGAC
** * * * *
16061634 CGAGGGTTGTGACAGCAGGATCGAG-AACACGTAGAGGGGGACCCTG-TCGATCCCCAGCTTACG
261 CGAGGGTTACGACAGCAGGATCG-GCAACACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCG
* * * * * **
16061697 CATCCCGCCCCTCTGGCCGGCTAAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAAGAATACGG
324 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAG
** * * *
16061762 AGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCTCAGTCTAAGATCAGACCGGATCGAGGGTT
389 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * **
16061827 GCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTTGGGGCACCATTG
454 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* * ** * *
16061892 CCGAAGCATCGCCGGAGAACCTGACAAGCGGCATTGGGGTTCTGACGATCGGGGGGTCCGTGGGG
519 ACGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGG
* ** * * *
16061957 TGTGTGCACACATGATGTATGATGGTTGCTGGTACTTGGACTTTATATTGGCCCCCTATCCCTCA
583 -GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16062022 TCAAACCTCAAGATCTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
647 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
16062087 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTTACAAAATCTTGTACATTTCGAGT
712 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
16062152 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
777 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
* * **
16062217 CAAAACTCCTTTCGAAAAAATTTCAAAAAATCTCGAACCGCAAAAAGTTCCAAAAATCATGA
842 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCATGA
* * *
16062279 AAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAA
1 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16062344 TTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** * *
16062409 CCCTATCGATCCACGGCTTGTGCATCCTATCTCT-TGGCCGGC---GTG---G--TGCCTGCCCG
131 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * *
16062465 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACCAGAC
196 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGAC
* * * * * *
16062530 CAAGGGTTGC-AGCAGCAGGATCGGCAGCACGCAGAGGGGCACCCGATCGATCCCCGGCTTGTGC
261 CGAGGGTTACGA-CAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * *
16062594 ATCCCGCCCCTCTGGCCAGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTG----A--C-T-TAG-
325 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGA
* *
16062650 G--------CA---T-A-C----GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
390 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTG
* *
16062698 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCC
455 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCA
* * * *
16062762 CCGGAGCACCGCCGGAGAACTTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGG
519 ACGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
16062825 TGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC
584 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
16062890 AAACCTCGAGTACTTACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGGTGCCAGTAGCC
649 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
16062955 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTT
714 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * ** *
16063020 TTAGCTTAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTGGGGCCA
779 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* ** *
16063085 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAAAAAAAGTTTAAAAAA
844 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTAAAAA
16063138 CCCACCTACC
Statistics
Matches: 2370, Mismatches: 278, Indels: 69
0.87 0.10 0.03
Matches are distributed among these distances:
865 13 0.01
866 270 0.11
867 4 0.00
869 7 0.00
870 139 0.06
874 1 0.00
875 1 0.00
876 1 0.00
879 2 0.00
887 1 0.00
888 1 0.00
889 1 0.00
892 1 0.00
895 3 0.00
896 155 0.07
898 93 0.04
899 6 0.00
900 614 0.26
901 581 0.25
902 22 0.01
904 176 0.07
905 192 0.08
906 86 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGAC
CGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAG
TTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAAC
GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
ACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTAAAAATCATGA
Found at i:16061785 original size:26 final size:26
Alignment explanation
Indices: 16061751--16061807 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16061741 TGGGTTGACT
* *
16061751 TAAGAATACGGAGTTCATTCCCAGTC
1 TAAGAATACAGAGTTAATTCCCAGTC
* *
16061777 TAAGCATACAGAGTTAATTCTCAGTC
1 TAAGAATACAGAGTTAATTCCCAGTC
16061803 TAAGA
1 TAAGA
16061808 TCAGACCGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (26 bp):
TAAGAATACAGAGTTAATTCCCAGTC
Found at i:16064294 original size:26 final size:26
Alignment explanation
Indices: 16064265--16064343 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16064255 GTTGACTTAG
16064265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16064291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16064317 GCATACGGAGTTCGTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16064343 G
1 G
16064344 ATCAGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16065213 original size:26 final size:26
Alignment explanation
Indices: 16065177--16065229 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065167 GTTGACTTAG
16065177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16065203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16065229 G
1 G
16065230 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16066112 original size:26 final size:26
Alignment explanation
Indices: 16066073--16066125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16066063 GTTGACTTAG
* *
16066073 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16066099 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16066125 G
1 G
16066126 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16067006 original size:26 final size:26
Alignment explanation
Indices: 16066975--16067027 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16066965 GTTGACTTAG
16066975 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
16067001 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
16067027 G
1 G
16067028 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:16069715 original size:26 final size:26
Alignment explanation
Indices: 16069679--16069731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16069669 GTTGACTTAG
16069679 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
16069705 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16069731 G
1 G
16069732 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:16070229 original size:900 final size:898
Alignment explanation
Indices: 16063399--16071521 Score: 10757
Period size: 900 Copynumber: 9.1 Consensus size: 898
16063389 GTTGACTTAG
* * * *
16063399 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGACCAAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ***
16063463 CTCGGGCATTTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
**
16063528 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTG
* * * *
16063593 CGATGGGTGCTGGTACTTAGCCCTTATATGGGCCCCCTATCCGTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16063658 ACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-C-TTAGCCATTAAAGTGTCTG-AAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16063720 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* *
16063785 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
16063850 ATTTCAAAAAATCTCGAACCGCAAAAAGTTCCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16063915 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16063980 TTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
16064045 CATCCTATCTCTCTGGCCGGCGTGGTGCCTGCCCG--C--CCGCTCGTTTCATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
16064106 GCATACGGAGTTCATTCCCAGTGTAAGATTAGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * *
16064171 GCACGTAGAGGGGCACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGTTGAGCGC
779 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
16064236 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
16064291 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAATCTAAGATCAGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA---------C---C---G----GAC-----
* * * * **
16064356 CGAGGGTTGTGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *** * *
16064421 CACCA---TC---GC-T----GGAG-ACCTTACCGGCTATATTGGGGTTCCGACAACCGGGGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* ** * * *
16064474 CCGGGAGGGTGTGCGCACATGATGTGTAATAGGTGCTGGTACTTGGCCCTTATACTGGCCACCTA
169 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16064539 TCCCTCATCAAACCTCGAGAACACAGACCCCTTTAAAAGAGTATTTGAGATTTTACAGGTTTGCT
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
16064604 GCTAGTAGCCAGTAAAGTGCCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTAC
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTAC
* ** *
16064669 ACTTCGAGTTTTTTGCTGAATTTTTTTGTATATGCCAAGAAAAATACAAGGATCACGTCTACCAA
362 ACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * *
16064734 GTTTGGGTTCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCCCGAGCTGCAAAAAGTTTCAAAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
16064799 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16064864 TATGAATTTCCAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16064929 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCCCG-C
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
16064993 C-T--GCTCATTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAG
686 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * **
16065055 ACCGAGGGTTGTGACAGCAGAATCTGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
751 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* *
16065120 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGG
816 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
16065185 AGTTCATTCCCAGTCTAA
881 AGTTCATTCCCAGTCTAA
*
16065203 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGACAGTACATG-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-CAGCACATGCTGG
* * * *
16065266 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCACCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
16065331 AACCTGACCGGCGGCATTGGGGTTTCGACGATCAGTGGGGGCCGGGGGGGTGTGCGCAGATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-G-GGGGGCCGGGGGGGTGTGCGCACATGATG
* ** *
16065396 TGCGATTGGTGCTGGTTGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16065461 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16065526 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
** * **
16065591 TGTATATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
16065656 AAAGTTTAAAAAATCCCGAGCTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16065721 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16065786 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
16065851 AGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCG-CC-T--GCTCATTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
* ** * * *
16065912 AGGCATACGGAGTTCATTCACAGTCTAAGATTGGACCAGACCAAGGGTTACGGTAGCAGCATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* * ** * * ** * *
16065977 CAGCACGCAGAGGGGCACCCGGTCGATCCCCGACTTGCGCATCCCACCTTTCTCGTCGGCTGAGC
777 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
16066042 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16066099 GCATACGGATTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16066164 C-CTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGCGTCATCGGAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
16066228 AACCTGACCGGCGGCGTTGGTGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCAGATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
16066292 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
16066357 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCTATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16066422 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
** * * *
16066487 TATATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAAT-CTTCCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAA
* * *** * *
16066551 AAGTTTAAAAAATCCTGAACTTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGATTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16066616 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16066681 ATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16066746 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGGCCTGTCCGCCCGTTTGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCG--C--TCGTTTCGTCGGTTGG
* * *
16066811 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCATACCGAGGGTTACGGCAGCAAGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGAT
* ** * * * * *
16066876 CGGTAGCACGTAGAGGGGGACCCGACTAATCCGCGGCTTACGCATCCCACCCTTCTGGCCGGTTG
774 CGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * *
16066941 AGCGCCCATACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16067001 GCATACGGAGTTCATTTCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
16067066 CTCGGGCTTGTGCTGGTGCCGCATTTTTCTTAGCCGGGGCACTATTGTTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
16067131 ACCTAACCGGTGGCATTGGGG-TCCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
16067194 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16067258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16067323 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * *
16067388 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
16067453 AATTTTAAAAAATTCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAAGAGAAAACGAGTCATC
453 AATTTTAAAAAA-TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
16067518 TTGCCATGAAACTTCACGTGAAGGCTTAATGGACCAATGTTTTAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
16067583 CATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
16067648 CGCGTCCCGTCTCTCTGGTCGGCATAGAGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
* * * *
16067713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGTAGCAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* * ** *
16067778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGGTGGTTGAGC
777 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
16067843 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16067900 GCACACGGAGTTCATTCTCAGTATAAGATCGGACCAGACCGAGGGTGGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
16067965 CTTAGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGTCGGAACATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * *
16068030 ACCTAACCGGCGACGTTAGGGTTTCGGCGATCGGGAGGGCCGGGTGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
* *
16068095 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16068160 ACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
16068225 AGGGACACTTTTTTCGAATGGTCACAATATCTTGTACACATCGAGTTTTTAGCTGACTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTG
* * * * *
16068290 TGCATGTCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACACCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
16068355 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16068420 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
16068485 TTGTCATGCAAAAATATGAAAATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * ** *
16068550 CATCCCATCTCTCTGGCCGGTATAGTGCTCGTCCGCCCACCCACCCGTTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * * * * * *
16068615 TTAGGCATACGAAGTTCATTCCC-GATCCAAGATCCGATCAGACTGAGGGTTGCAGTAGTAGGAT
710 TTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGAT
** * * * * ** * *
16068679 TAGCAGCACATAGAGTGGGACTCGGACCGATCCCCAGCTTGCGCATCCTTCCCCTTTGGCCGACT
774 CGGCAGCACGTAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16068744 GAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCAAACTGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16068805 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ***
16068870 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCATTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * ** *
16068935 ACCTAACCGGTGACATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16069000 TGATGGGTGAC-GGTACTTGGCCCTTATTTTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 CGATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16069064 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
16069129 TTGGGG-CACTTTTTTCTAATGGTCGCAAAATCTTGTACACTACGAGTTTTTACCTGAATATTTT
324 -TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * * * * *
16069193 TGTGCATGCAAACAAAAATACAAGGATTACGTCTACCTAGTTTGGTGCCAAAAATCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
16069258 AAATTTTAAAAAATCCTGAACCTCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAGCGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
16069323 TTGCCATGAAACTTCATGCGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
16069388 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16069453 CGAATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
** * *
16069518 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* * * * *
16069583 CAGCACGTAGTGGGGGACTCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGT
777 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
16069648 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16069705 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16069770 CTCGGGCATGTGCTAGTGTCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
16069835 ACCTGACTGGCGGCATTGGGGGTTCCGACGATCGGGGGGCTGGGAGGGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATT-GGGGTTCCGACGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATGT
16069900 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
* * **
16069964 ACGCCCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTAAGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16070029 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16070094 ATGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
16070159 AATTTTAAAAAATCTCGAACCGCAATAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16070224 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16070289 ATTGGCATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
16070354 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTG-CCG---GCTCGTTTTGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
* ** ** * *
16070415 GGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGATCGAGGGTTACGGCAGCAGGATTGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGC
* * * * **
16070480 AGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGTGCATCCCGCCCCTCTGGCCGAAT-AGCG
778 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
16070544 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC---
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16070597 -C--A---AG----------GTC--A-A----ACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
16070639 CTCGGGCATGTGCTGGTGCTGCATTTTTGTTCATCGGGGCACCATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
16070704 ACCTGACCGGCGGCATTTGGGTTCCGACGATCGGAGGGCCGAGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTG
* *
16070769 TGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
16070833 ACACCCTTAAAAAGGATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16070898 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * *
16070963 TGCATACGAGA-AAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAA-TGCCTTCCGAAA
389 TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAA
* * * *
16071026 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTACCAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
16071091 TAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16071156 CATTGGCA--CATGGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
582 CATTGGCATGCA--GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
16071219 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCGCACGCCCTCACGCTCGTTTCGTCGAT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCGTC-CGCTCGTTTCGTCGGT
* *
16071284 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACC-GAACCGAGGGTTACGGCAGCA
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCA
* * * * * * * ** *
16071348 GGATTGGCAGCACGCAGAGGGGCACCCGGCCGATCACCGACTTACGCATCCCTTCCCTCTGGCAG
770 GGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* ** * *
16071413 GCTGAGCGCCCGCACGCCCGTTTCGTATGTTGACTTAGGCATACAGAGTTCATTCCCGGTCTAA
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16071477 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
16071522 GCATGTGCTA
Statistics
Matches: 6373, Mismatches: 727, Indels: 251
0.87 0.10 0.03
Matches are distributed among these distances:
866 2 0.00
867 161 0.03
868 320 0.05
869 100 0.02
872 2 0.00
873 1 0.00
874 1 0.00
875 1 0.00
876 126 0.02
877 51 0.01
881 1 0.00
883 1 0.00
885 43 0.01
886 20 0.00
888 2 0.00
889 1 0.00
891 6 0.00
892 28 0.00
893 5 0.00
894 486 0.08
895 62 0.01
896 719 0.11
897 174 0.03
898 97 0.02
899 320 0.05
900 747 0.12
901 517 0.08
902 525 0.08
903 281 0.04
904 102 0.02
905 676 0.11
906 8 0.00
907 109 0.02
908 39 0.01
910 21 0.00
911 12 0.00
912 539 0.08
913 3 0.00
914 3 0.00
916 1 0.00
919 60 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16071487 original size:26 final size:26
Alignment explanation
Indices: 16071451--16071503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071441 GTTGACTTAG
*
16071451 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16071477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16071503 G
1 G
16071504 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16072075 original size:26 final size:26
Alignment explanation
Indices: 16072037--16072086 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16072027 GACTTAGCCG
16072037 TACGGAGTCCATTCCCAGTCTAAGCA
1 TACGGAGTCCATTCCCAGTCTAAGCA
*
16072063 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTCCATTCCCAGTCTAAG
16072087 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTCCATTCCCAGTCTAAGCA
Found at i:16075098 original size:875 final size:869
Alignment explanation
Indices: 16071644--16075546 Score: 4892
Period size: 875 Copynumber: 4.4 Consensus size: 869
16071634 TACATGATGT
* * * * *
16071644 GCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
*
16071709 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
* * * *
16071774 GATGTGCCTAAACCCACCTACCACCCTATTGATCAACGGCTTGCGCATCCCATCACTCTGGCCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
** * * *
16071839 CGTAGTGCCCG----TTCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
196 CGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** ** * ** * ***
16071900 AAGATCGGACCGGACTGAGGGTTGTGGTAGTAGGATCGGGAGCACACAGAGGGGGACCCTACCGA
261 AAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAACCGGTCGA
* * *
16071965 T-CCCGGCTTGCGCATCCCACCCCTCTGGCCTG-CTGAGTGCCCGCACGCTCATTTCGTGGGTTG
326 TCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGACTGAGCGCCCGCACGCTCGTTTCGT-GG--G
*
16072028 ACTTAGCCGTACGGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
387 ---T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * * * * * * *
16072093 -TCAGACCGAGGGTTGCGAAAGCACATGTTGGGCTGGGGCATGTCCTGGTGCCCCATTTTTCTTC
429 CT-GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTC
* ** * * * *
16072157 GTCGGGGCACCATCGTCGGAGCATTACCGGAGAACTTGACTGGCGGCATTAGGGTTCTGGCGATC
493 ATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATC
* * *
16072222 GGGGGGGCCGGGAGGGGTATGCGCACATGATTTGCGATGGGGGCTGGTACTTGGCCCTTATATTG
558 GGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
16072287 GCCCTCTATCACTTATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAG
621 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
16072352 GTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAACGGTCACAAAATC
686 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
16072417 TTGTAGACTTCGAGTTTTTGGCTGAATATTTTTT-TGCATGCCAACAAAAAATACAAGGATCACG
751 TTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACG
* *
16072481 TCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
814 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
*
16072537 GCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
1 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
*
16072602 GGCTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
* * * *
16072667 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGG
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
16072732 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
196 CGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
16072797 AAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGAAGGGGAACTGGTCGA
261 AAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAACCGGTCGA
*
16072862 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
326 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * ** ** * * *
16072927 CTTAGGCATATGGAGTTCATTCCCAGTATAAAATTGGAC-CAAAAGAGGGTTGCGGCTGCACATG
391 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCACATG
* * **
16072991 CTGGGCTCGGG-AATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGC
456 CTGGGCTCGGGCAA-GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGC
* * * * * * *
16073055 CGGAGATCCTGACCGATGGCATTGGGGTTCCGGCTACCAGGGGGGTCGGGTGGGTGTGCGCACAT
520 CGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGG-GGGTGTGCGCACAT
*
16073120 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCCAGA
584 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
16073184 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
649 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
16073249 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAA-T
714 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
16073313 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
779 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
*
16073378 AAAAAAATTTTAAAAAATCTCGAACC
844 GAAAAAATTTTAAAAAATCTCGAACC
* *
16073404 CCAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
1 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
*
16073469 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAAAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
* *
16073534 GATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG-CGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
16073598 CGTAGTGCCCG----CCCGTTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCT
196 CGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
16073659 AAGATCAGACCAGACTGAGGGTTACGATAGTAGGATCGGCAGCACACAGAGGGGGAACGGGCCGA
261 AAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAACCGGTCGA
*
16073724 TCCCCGGCTTGCGCATCCCACCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
326 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
16073789 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAAAGTTCATTCCCAGTCTAAGATCAGAC
391 CTTAGGCATACGGAGTTCATTCCCAG--T---C---T-AAG---ATT----G-----GA-CTG--
* * * *
16073854 CAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCA-
432 --GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCAT
* * * *
16073918 CGAGGCACCA---TC---G--T---CGGAGAACGTGACCGGCGGCATTAGGGTTCCAGCGATC-G
495 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGG
* *
16073971 GGTGG-C----TGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
560 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
16074031 CTTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGGGCATTCGAGATTTTACAGGTTT
625 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
16074096 GCTGCCAGTAGCCTTTAAAGTATCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGT
690 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
16074161 ACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
755 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
16074226 AAGTTTGGGGCCAAAAATCCTTTCGAAAAAAGTTTAAAAAATCTCGAACA
820 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * * * * * *
16074276 ACAAAAAGTTTCGAAAATTGTGAAAAATAGAGAACGAGTCATCTTACCATGAAACTTCACGTGAA
1 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
* * *
16074341 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
*
16074406 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
16074471 CGTAGTGCTCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAATTCATTCCCA
196 CGTA--G-T-GCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * ** * ** * *
16074536 GTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGTACGTAGAGGGGGACCCGA
257 GTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAACCGG
* * * * * *
16074601 TCGATCCTCGACTTGTGCATCCCGCCCCTCTGGTTGGCTGAGCGCCCGCACGCTCCTTTCGTGGG
322 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGG
16074666 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCA
387 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCA
** * * * *
16074731 CATGCTATGC-CTGGGCAAGTACTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCA
452 CATGCTGGGCTC-GGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA
* * * *
16074795 TCGTCAGAGAACCTGACCGACGGCATTAGGGTTCTGGTGATCGGGGGGGCCCAGGGGGGTGTGCG
516 TCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGG-CC-GGGGGGTGTGCG
* *
16074860 CACATGATGTGCAATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCT
579 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
16074925 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
644 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
16074990 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCT
709 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
16075055 GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTC
774 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* *
16075120 CTTCCGAAAAAATTCTAAAAAATC-CTGAACT
839 CTTCCGAAAAAATTTTAAAAAATCTC-GAACC
* * * * *
16075151 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
1 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
* * *
16075216 GGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAA
66 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
16075281 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
131 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * * * * * *
16075346 CGTAGTGCCCGCCCGCCCACCTGCCCGTTCGTTTTGTTGATTGGCTTAGGTATACAGAGTTCATT
196 CGTAGT----GCCCGCCCA----CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
16075411 CCCAGTTTAAGATCGGACCAGACCGAGGGTTCCGACAACATGATCGATAGCACACAGAGAGGGAC
253 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAA
* * *
16075476 CCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCG
318 CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCG
16075541 TGGGTT
383 TGGGTT
16075547 CATTCTCAGT
Statistics
Matches: 2650, Mismatches: 282, Indels: 170
0.85 0.09 0.05
Matches are distributed among these distances:
854 1 0.00
855 52 0.02
856 9 0.00
859 4 0.00
860 2 0.00
862 191 0.07
864 2 0.00
865 1 0.00
866 13 0.00
867 290 0.11
868 16 0.01
869 145 0.05
870 104 0.04
871 250 0.09
872 295 0.11
873 9 0.00
874 4 0.00
875 472 0.18
876 7 0.00
877 37 0.01
878 1 0.00
879 150 0.06
880 3 0.00
881 182 0.07
882 1 0.00
883 2 0.00
884 3 0.00
885 2 0.00
887 1 0.00
888 9 0.00
889 48 0.02
890 1 0.00
892 1 0.00
893 190 0.07
895 1 0.00
897 102 0.04
898 49 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGAACCGGTCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCACATG
CTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
GGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
AAAAATTTTAAAAAATCTCGAACC
Found at i:16075582 original size:26 final size:26
Alignment explanation
Indices: 16075544--16075613 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
16075534 CGTTTCGTGG
16075544 GTTCATTCTCAGTCTAAGCATACGGA
1 GTTCATTCTCAGTCTAAGCATACGGA
* *
16075570 GTTCATTCCCAGTCTGAGCATACGGA
1 GTTCATTCTCAGTCTAAGCATACGGA
16075596 GTTCATTCTCAGTCTAAG
1 GTTCATTCTCAGTCTAAG
16075614 ATCGGATCGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GTTCATTCTCAGTCTAAGCATACGGA
Found at i:16076293 original size:59 final size:59
Alignment explanation
Indices: 16076201--16076437 Score: 336
Period size: 58 Copynumber: 4.0 Consensus size: 59
16076191 TCTTGTGTAG
*
16076201 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
16076260 GGAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTGATTTTTAA
* * * **
16076318 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGCTTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
16076378 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
16076438 TTTAAAGAAA
Statistics
Matches: 159, Mismatches: 13, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
57 1 0.01
58 55 0.35
59 44 0.28
60 47 0.30
61 12 0.08
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
Found at i:16076464 original size:14 final size:14
Alignment explanation
Indices: 16076445--16076502 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
16076435 TTATTTAAAG
*
16076445 AAAATAGAATAATA
1 AAAATAGAAAAATA
16076459 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
16076473 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
16076488 AAAAT--AAAAATA
1 AAAATAGAAAAATA
16076500 AAA
1 AAA
16076503 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:16076472 original size:17 final size:17
Alignment explanation
Indices: 16076452--16076502 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
16076442 AAGAAAATAG
16076452 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
16076469 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
16076487 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
16076503 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:16076511 original size:17 final size:16
Alignment explanation
Indices: 16076489--16076528 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
16076479 AGTAAAACAA
*
16076489 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
16076505 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
16076522 AAATAAA
1 AAATAAA
16076529 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:16076977 original size:20 final size:20
Alignment explanation
Indices: 16076952--16077001 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
16076942 TTCATCGGAT
*
16076952 TCTGGGTTTTGTCACCGAAA
1 TCTGGGTTTTGTCACCAAAA
16076972 TCTGGGTTTTGTCACCAAAA
1 TCTGGGTTTTGTCACCAAAA
16076992 TCTGGGTTTT
1 TCTGGGTTTT
16077002 TTTGTCGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (20 bp):
TCTGGGTTTTGTCACCAAAA
Found at i:16077701 original size:25 final size:25
Alignment explanation
Indices: 16077673--16077724 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
16077663 TATATTAGAG
16077673 AAAATAATAAGATAATAAAATAAGTA
1 AAAAT-ATAAGATAATAAAATAAGTA
* * *
16077699 AAAATATCATATAATAATATAAGTA
1 AAAATATAAGATAATAAAATAAGTA
16077724 A
1 A
16077725 TAAAAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (25 bp):
AAAATATAAGATAATAAAATAAGTA
Found at i:16078613 original size:26 final size:26
Alignment explanation
Indices: 16078577--16078629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078567 GTTGACTTAG
16078577 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16078603 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16078629 G
1 G
16078630 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16079505 original size:26 final size:26
Alignment explanation
Indices: 16079469--16079521 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16079459 GTTGACTTAG
16079469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16079495 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16079521 G
1 G
16079522 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16082178 original size:26 final size:26
Alignment explanation
Indices: 16082139--16082191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16082129 GTTGACTTAG
* *
16082139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16082165 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16082191 G
1 G
16082192 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:16083065 original size:26 final size:26
Alignment explanation
Indices: 16083035--16083087 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16083025 GTTGACTTAG
16083035 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16083061 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16083087 G
1 G
16083088 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16083137 original size:896 final size:894
Alignment explanation
Indices: 16081272--16096615 Score: 18693
Period size: 896 Copynumber: 17.3 Consensus size: 894
16081262 GTTGACTTAG
* * ** * * *
16081272 GCATACGGAGTTCATTCCTAGTATAAGATCGGACTGGAACAAGGGTTCCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16081337 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGACACCATCGTCGGAGCATCG-CTGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
* *
16081401 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTG
* * *
16081466 TGATAGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16081531 ACCCCCTTGAAGGGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16081596 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16081661 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16081726 ATTTTAAAAAATCCCCAA-CGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
16081790 GCCATGAAAGTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
16081855 TTGGCACACA-AAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
16081919 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTAATCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
16081984 AGGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTCGCGGTAGTC-GGATCGGCAGCA
714 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAG-CAGGATCGGCAGCA
* * * * * *
16082048 CGCA-AGGGGGTACTCGGCCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCT
778 CGCAGAGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
16082112 GCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
16082165 GCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTGTGGTAGCACTTGCTAGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16082230 CTCGAGCATGTGCTAGTGTCGCATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * **
16082295 ACCTGACCGGCGGCATTGTGGTTCCGACGGTCGGGGGGGTCGGGGGGGTGTATGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTG
16082360 CGATGGGTGCTGG-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16082424 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTATGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * ** *
16082489 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATGCTTCTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16082554 TGCGTGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
16082619 AGTTTAAAAAATCTCGAATCGCAAAAAGTTTCCAAAATCGTGAAAAAAATAGAAAACGAGTCGTC
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG--AAAAATAGAAAACGAGTCGTC
* * *
16082684 TTGCCAT-AAATTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
16082748 CATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16082812 GCGCATCCCGTCTCCCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * **
16082877 CATACAGAGTTCATTCCCAGTCTAAGATTGGACCTGACCGAGGGTTGCGGTACCAGGATTAGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* ** * *
16082942 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTTCGTCCTGCCCCTCTGGCCGGCTGAGCGCC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
16083007 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16083061 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16083126 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ** *
16083191 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCAGGGTGGCCAGGGGGTGTGCGCACATGATGTAC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
16083256 GATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAGTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
16083321 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAATTGCCTGAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16083386 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAAATTTTTGTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
16083451 GCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
16083516 ATTTGAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGACTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
16083581 CCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16083646 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTACGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16083711 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCATCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCT
* * * *
16083776 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAAGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCG
* * * * * *
16083841 GCAGCAAGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCAGGCTGCG
772 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * *
16083906 CGCCTGTACACTCGTTTCATGGGTTGACTAAGGCATATGGAGTTCATTCCCAGTCTTA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16083964 GCATACAGAGTTCATTCCCAGTCGAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16084029 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
16084094 ACCTGACCGGCGGCATTGGGGTTTCGACGTTCGGGGGGGCGGGGGGG-GTGCGTGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGC--GCACATGATGT
* * *
16084158 GTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16084223 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16084287 TGGGGACACCTTTTTCAAATGGTCTCAAAATCTTCTACACTTCGAG--TTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16084350 GTGCATCCCAACAAAAATACAAGGATCTCGCCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
16084415 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
16084480 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
16084545 ATTGGCATGCATAAATATGAAGATGTGCCTAAACCAACCTACCTCCCTATCGATCAACGGCTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
16084610 GCATACCGTCTCTCTGGTAGGCATAGTGCCCGTCCGCCCGCCTGCCCGCTCATTTCGTCGATTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* * * *
16084675 CTTAGGCATAC-GACGTTCATTCCCAGTCTAAGATTGGACCAGAGCGAGGGTTGTGGCAGTAGGA
705 CTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * * * ** * *
16084739 TCCGCAACACGTAGAGGGGGACCCAACCGATTCATGACTTGTGCATCCCG-----CT------C-
769 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16084792 ---CGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCACAATCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
16084850 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAGGGTTACGGTAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
16084915 CTCGGGCATGTGCTGGTGTCACATTTTCCTTTGTCGGGGCACCATCGTC-GAGGAATCGCCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA-GCATCGTCGGAG
* * * * **
16084979 AACCTTACCGTCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGTGGGTGTGCGCACAAAATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGG-GGGTGTGCGCACATGATG
* * * *
16085044 TAG-GATGGGTGCTGGTACTTGGCCCATATATTGGCCCTCTATACCTCATCAAACCTCAAGAACT
192 T-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16085108 CACATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
16085173 AATGCGGACACTTTTTTCAAATGGTCACAAAATGTTGTATACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
16085238 TTATGCATGCCAACAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
16085303 AAAATTTTAAAAAGTCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
16085368 CTTGCCGTGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCA-AAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16085432 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
16085497 GCGCATCCCGTCTCTCTGGTCGGTGTAGTGCTCGCCCGCCCGCCCGCCTGCTTGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCG-CT-C--GTTTCGTCGGTT
* * * ** * ** *
16085562 AGCGTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACTGGATCGAGGGTTGCATTAGTAGG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGG
* * * * * * * *
16085627 ACCAGCAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGTGCATGCCGCCCCTCTGGTCGGT
768 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
16085692 TGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTATAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16085754 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16085819 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACTGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
***
16085883 AACCTGACCGGCGGCATTAGGGGTTCTAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATT-GGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATG
* *
16085948 TGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
16086013 ACAACCCCTTAAAGTGCATTTTAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
16086078 ATGGGGACACTTTTTTCAATTGATCACAAAATCTTATACAGTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
16086143 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
16086208 AAATTTTAGGAAATCCCCAACCGAAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
16086273 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16086338 CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* **
16086403 CGCATCCCATCTCTCT-GCAAAGCGTAGTGCCCGCCCGCTCGCCCGCTCTCTCGTTTCGTCGGTT
647 CGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCG--C-C-CGCCCG----CTCGTTTCGTCGGTT
* * ** * *
16086467 GGCCTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGTCCGAGGGTTACGGTAGCAGG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGG
* * * * ** * *
16086532 ATCGGCAGCACGCTGGGGGGGACACGATCGATCCCCGATTTACGCATCTCGCCCCTCTGGCCGGC
768 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
16086597 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGTAGTTCATTCCCAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16086659 G-AT-CG-G---A-T--C-G-----G-T---------TCGAGGGTTGCGGTAGCACATGCAGAGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * * *
16086699 TCGGGCATGTGTTGGTGACACATTTTTCTTTGCCGAGACACCGTCACCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * * *
16086764 CCTAACCGGTGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTAC
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGGCGGGGGGGTGTGCGCACATGATGTGC
*
16086829 GATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCAC
* * *
16086893 A-TCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16086957 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16087022 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
16087087 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16087152 GCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16087217 TTGGCATGCAGAAATATGAAGATGTTCTTAAACCCACATACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16087282 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCCCCCCGCTCGTTTCGTCGTTTGGCTTAGG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
16087347 CATACGGAGTTCATTCCCAGTCTAAGATTGCACCGGACTGAGGGTTGCGGCAGCAGGATTGGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * *
16087412 CACGCAGAGGGGCACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTTTGGTCGGCTGAGCACC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
16087477 AGCACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16087527 -C-T---A----A----CA-TC----A---GACCAGACCGAGGGTTGCGACAGC-CATGCTGGGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
16087570 TTGGGCATCTGCTGGTGACGTATTTTTTTTCTTCGGCG-A--A----C----CATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * * * **
16087624 CCTGACTGGCGGCATTGGTGTTCCGACGATCGGGGGGGCCAGGGGGGTGTAAGCACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
* * *
16087689 GATGGGTGCTGGTACTTGGCCCATATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16087754 ACCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16087819 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* ***
16087884 TGCATTGCCAAAAGAAAATACTAGAGGATCACGCTCTACCAAGTTTTTCTGCCAAAACTCCCTTC
389 TGCA-TGCCAACA-AAAATAC-A-AGGATCACG-TCTACCAAG-TTTGGGGCCAAAACT-CCTTC
* * * *
16087949 TGAAAAAATTTTTAAAAAATCCCGAACCACAAAAAGTTGTCGAAAATCATGGAAAATA-AAGAAC
447 CGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTT-TCAAAAATCATGAAAAATAGAA-AAC
* * **
16088013 G-CTCGTCTTGCCATGAAACTTCACGTGAAGGGCTTGGTGAGGGACCATTGTACAAAATTTACAA
509 GAGTCGTCTTGCCATGAAACTTCACGTGAA-GGC-T--TAAGGGACCATTGTA-TGAATTTACAA
* * *
16088077 GCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACTCGCCTACCACCCTATC
569 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
16088142 GATCCACGGCTTTGCGCATCCGCGTC-CTTCTGGCCGG-GTAGTGCCTCGCCCTGGCCGTCCACT
634 GATCCACGGC-TTGCGCATCC-CGTCTC-TCTGGCCGGCGTAGTGCC-CGCCC--G-C--CCGCT
* * ** *
16088205 TGTTTTCATCGGTTGGCTTAGGCATACGGAAGTTCATT-CCAGTCTAAGATCAT-GACTGGATCG
690 CG-TTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGAT--TGGACCAGACCG
* * * *
16088268 AGGGTTTGCGGGTAGTAGGGATCGGAAGCATC-CAGAGGGGGACTCGGCTCGATCCCTCGGCTTG
751 AGGG-TTGC-GGTAGCA-GGATCGGCAGCA-CGCAGAGGGGGACCCGAC-CGATCCC-CGGCTTG
* *
16088332 CGCAT-CCGCCCCTCTGGCCGGCTGAGTGCACCGCCACGCTC-TTTCATGGG-TGACTTAGGCAT
810 CGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CCG-CACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
16088394 ACAGTAGTTCATTCCCAATCTAA
873 AC-GGAGTTCATTCCCAGTCTAA
* * * * * *
16088417 GCTTACGGAGTTCTTTCTCAGATCCTAAGCATCAGATCAGA-CGAGGTTTGCGGCAGCACATGCT
1 GCATAC-GAGTTCATTCCCAG-T-CTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
** * * * *
16088481 GGGCTCAAGCATGTGCTGGTGCCTCATTTTTCCTCATCGGGGCACCATCGCTGGAGCA-CG-CGG
62 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* *
16088544 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCTGGAGGGGTGTGCGCACATGAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-GGGGGGGTGTGCGCACATGAT
* *
16088609 GTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
16088674 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16088739 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
16088804 TTGTGCAAGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTTCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
16088869 AAAATTTTAAAAAATCTCGAACCAC-AAAAGTTTCAAAAATCATGAAAAATA-AAGAACGACTCG
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA-AACGAGTCG
* * *
16088932 TCCTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
16088997 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCA-CCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * * * * * * *
16089061 TACG----CCG----AGTAG--TGC-T--CGCCCGCCCGCACACTCGTTGCGTCGGTTGGCTTTG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
16089113 GCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
710 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
16089178 GCATGCAGAAGGGGACTCGACCGTTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * *
16089243 CCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16089298 GCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTGTGGCAGCACATGTTAGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16089363 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCC--A--A-------AGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
16089417 ACCTGACTGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGGCGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGG-GGGGTGTGCGCACATGATGTG
* *
16089482 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16089547 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16089612 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
16089676 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGTTAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
16089741 ATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGGAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16089806 GCCATGAAACTTCACGTGAAGGCTTAAGGTGGCCGTTGTATGAATTTACAAGCCATAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16089871 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-ACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
16089935 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGTCTGCTTGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGG
* ** * * *
16090000 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGAAACAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * ** * *
16090065 TGGTAGCACGCAGAAGGGGACCTGGTCGATCCCTGGCTTGCGCATCCCGCGCCTCTGGCCGGCTG
770 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
16090130 AACTCCCACACGCTTGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16090190 GCATACTGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * **
16090255 CTCAAGCATGTGCTGGTGCCGTATTTATCTTCGTCGGGGCACCATCACCGGAGCATCGCCAAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
16090320 ACCTGATCGGCGACATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
16090385 -AGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 GA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16090448 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCCGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * *
16090513 AAGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16090578 TGCATACC-A-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
16090641 ATTTAAAAAAATCTCAAATCGCAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
16090706 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *** *
16090771 CTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
16090836 CATCCTGTCTCTCTGGCCGACGTAATGCTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGACAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
16090901 ACGGAGTTCATTCCAAGTCTGAGATTGGACCAGACTGAGGGTTGCGGTAGCAAGATCAGTAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* *
16090966 GTAGAGGGGGACCCGACCGAT---C--CTT--G-A----G----T-T-GCC--C--A--TCCCGC
779 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
16091007 -C-C-C----C-T--G--G-C------ATACGGAGTTCATTCCCAGTCGAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16091039 GCATACAAAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16091104 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
16091169 ACCTGACTGGCGGCATTGGAGTTCCGGCAATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* ** * *
16091233 GATGCGTGCTCATACTTGGCCTTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * * *
16091298 CCCCCTTAAAGGGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCGTTAAAGCGTCTAAAAGG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
16091363 GGGACTCTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTATTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16091428 GCATGCCAAAAAAAATACAAGGATCACGTC-ATCCAAGTTTGGGGCCAAAAATCCTTCCGGAATA
390 GCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * *
16091492 ATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGGAAAATAAAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16091557 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTAAAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16091622 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCATACCACCCTATCGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
16091687 CATCCCGTCTTTTTGGCCGGC-TAGTGCTTGCCCGCCCGTCCGTCCGTTCATTTCGTCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGC
* *** ** * * *
16091751 TTAGGCATACGGAATTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGTTAGCAAGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATC
* * * * * * *
16091816 GACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCAGCCCTTTTGACCGGCTGA
771 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
16091881 GCACCAGCACGCTCGTTTCGTGGGTGGACTTAGGCATAC---G----------G----A
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16091923 G----C----TCATTCCCAGTCTAAGATCGGACCAAACCGATGGTTGCGACAGCACATGCTGGGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** *
16091980 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
*
16092045 CCTGA-------C--------T--GGCGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGT
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
*
16092092 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
16092157 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAATCTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16092222 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16092287 GCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTTGGGCCAAAA-TTCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
16092351 TTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16092416 CCATTAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
16092481 TGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCATGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16092546 ATCCCGTCTCTCTGGCCGACGTAGT----GCTCGCCCGCTCATTTCGTCGGTTGGTTTAGGCATA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
16092607 CGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACA
715 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * * * *
16092672 TAGAGGGGGACACGATCGATCCCTGGCTTGTGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGCA
780 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
16092737 CGCTCGTTTCGTGGGTTG----A--CATA--G-G--CA-T---A--C---
845 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * *
16092767 G---A--AGTTCATTCTCAGTCTAAGATCGGGTCAGACCGAGGGTTATGGTACCACATGCTGGCC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
16092827 TCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACTAGG-GA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GTCGGAGA
* * * *
16092891 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGCAGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGGC-GGGGGGGTGTGCGCACATGATGT
* *
16092956 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
16093021 CAGCCCCTTAAATAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16093086 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
16093151 GTGCATGCCAACAAAAATACAAGGATAATTTCTACCACGTTTGGGGTGC-AAACTCCTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAA
*
16093215 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * **
16093280 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTTTGAATTTACGAGCTGTAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
16093345 CATTAGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
16093410 CGCATCCCGTCTCTCTGGTCGGCGTAGTACCC-ACCGCCCGCTCATTTCGTCGGTTGGCTCAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * * *
16093474 ATACGGAGTTCATTTCTAGTCTAAGATCGGACC-GAACTGAGGGTTGTGGCAGTAGGATAGGCCG
712 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGGCAG
* ** * * * * *
16093538 CACGTAGAGGGGGACCCG-CTCGATCTTCGGCTTGGGCATCCCGACCCTCTGCCCGACTGAGTGC
776 CACGCAGAGGGGGACCCGAC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
16093602 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16093657 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTTCGGCAGCACATACTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16093722 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGCCACCATCGTCGAATCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** *
16093787 ACCTGACAGGCGGCATCGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
16093852 GATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16093917 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16093982 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
16094047 GCATGCCAAAAAAAATACAAGGATCATGTCTGCCAGGTTTGGAGG-CAAAACACTTTCCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAA
* * *
16094111 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
16094176 GTCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16094241 TTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16094306 CATCCTGTCTCTTTGGCCGACGTAAAGTCCACCCACCCGCCCCGCCCGCCCGCTCGTTTCGTTGG
649 CATCCCGTCTCTCTGGCCGGCGT--AGT----------G-CCCGCCCGCCCGCTCGTTTCGTCGG
* ** *
16094371 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA-TCAAGCCAGATCGAGGGTTGCGGTAGC
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCAGACCGAGGGTTGCGGTAGC
* ** * * *
16094435 AGGATCGGCAGCACGTAGAGGGGGACCCGGTCAATCCCTGGCTTGCGCATCTCGCCCCTCTGGCC
765 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
16094500 GACTGAGCACCC-CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16094564 GCATACAAAGTTCATTCCCTGTCTAAGATCGGACC-GAACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
** * * *
16094628 GCTCGACCATGTGCTGGTGCCGCATTTGTT-TTCGTCGGGGCACCTTCGTCGGAGCATCGCCGGA
64 GCTCGGGCATGTGCTGGTGCCGCATTT-TTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * *
16094692 GAACCTGACTGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGCGGGTGTGCGCACATG
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGG--GGCGGGG-GGGTGTGCGCACATG
** * * *
16094757 ATGTGCGATGGACGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCTTCATCAAACCTGGAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * *
16094822 CTCACACCTTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCGATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
16094887 GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
16094952 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTAGGGCCAAAACTCCTTCCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
16095017 AAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
449 AAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
16095081 CGTCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * ** *
16095146 ATGGCATCGGCATACAAAAATATGAAGATGTTTCTAAACCCACCTACCACCCTATCGATCCACGA
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** *
16095211 CTTGCACATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCTCGTTTTTTCGATTGGCTT
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * **
16095276 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGATTACGGTAGTAGGATCAA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGG
* * * *
16095341 CAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGC
773 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
16095406 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16095463 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** ** *
16095528 CTTGGGCATCTGCTAGTGCTGTATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
16095593 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * *
16095658 GATGGGTGCTGGTACTTGGGCCTTATGTTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
16095723 CCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT-CCTAGTAGCCATTAAAATGTTTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAAT
* * * *
16095787 TGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTATTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16095852 TGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTTCTCCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * **
16095917 ATTTTAAAAAATCCCTAACCGGAAAAAGCTTT-GAAAATTGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
16095981 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16096046 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
16096111 GTATCCCGTCTCTTTGGTCGTCGTAGTGCCCGTCCGCCCGCCTGCTCTTTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
16096176 GGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTGTGGCAGCAGGATCGGC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * ** * ** *
16096241 AGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTTTGCATCCCGTCCCTCTAACCGACTGAGCG
774 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* **
16096306 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * *
16096362 GCATACGGAGTTCATTCTCAGTCTAAGATCGGGTCGGACCGATAGTTACGGCAGAACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16096427 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTC--GG-AGCAT---C---GC--C-T--GAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
16096478 ACTTGACTGGCGGCATTTGGGTTCCGGCGATCGGGGGGGCCGGCGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * *
16096543 GATGGGTGCTAGTGCTTGGCCCTTATATTTGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16096608 ACCCCTTA
260 CCCCCTTA
16096616 GGCATACCGA
Statistics
Matches: 12498, Mismatches: 1559, Indels: 796
0.84 0.10 0.05
Matches are distributed among these distances:
841 5 0.00
843 1 0.00
844 1 0.00
847 248 0.02
848 60 0.00
849 314 0.03
850 4 0.00
851 241 0.02
854 10 0.00
855 2 0.00
856 2 0.00
857 1 0.00
858 307 0.02
859 255 0.02
860 125 0.01
861 116 0.01
862 13 0.00
863 10 0.00
864 21 0.00
865 4 0.00
866 258 0.02
867 228 0.02
868 17 0.00
869 145 0.01
870 463 0.04
871 139 0.01
872 202 0.02
874 21 0.00
875 197 0.02
876 34 0.00
877 403 0.03
878 111 0.01
879 173 0.01
880 48 0.00
881 80 0.01
882 53 0.00
883 30 0.00
884 33 0.00
885 182 0.01
886 243 0.02
887 155 0.01
888 81 0.01
889 199 0.02
890 193 0.02
891 5 0.00
892 381 0.03
893 395 0.03
894 542 0.04
895 687 0.05
896 844 0.07
897 12 0.00
898 151 0.01
899 542 0.04
900 166 0.01
901 499 0.04
902 120 0.01
903 452 0.04
904 649 0.05
905 287 0.02
906 2 0.00
907 194 0.02
908 156 0.01
909 66 0.01
910 21 0.00
911 446 0.04
912 2 0.00
913 27 0.00
914 47 0.00
915 63 0.01
916 11 0.00
917 13 0.00
918 10 0.00
919 9 0.00
920 1 0.00
921 7 0.00
922 6 0.00
923 13 0.00
924 240 0.02
925 2 0.00
926 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16084861 original size:26 final size:26
Alignment explanation
Indices: 16084824--16084876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16084814 GCTGACTTAG
16084824 GCATACAGAGTTCATTCACAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
* *
16084850 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCACAATCTAA
16084876 G
1 G
16084877 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:16089308 original size:26 final size:26
Alignment explanation
Indices: 16089272--16089324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16089262 GTTGACTTAG
*
16089272 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16089298 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16089324 G
1 G
16089325 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16090200 original size:26 final size:26
Alignment explanation
Indices: 16090161--16090216 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16090151 TGGGTTGACT
16090161 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
16090187 TAAGCATACTGAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16090213 TAAG
1 TAAG
16090217 ATTGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16093667 original size:26 final size:26
Alignment explanation
Indices: 16093631--16093683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093621 GTTGACTTAG
16093631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16093657 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16093683 G
1 G
16093684 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16095473 original size:26 final size:26
Alignment explanation
Indices: 16095437--16095489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16095427 GTTGACTTAG
16095437 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16095463 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16095489 G
1 G
16095490 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16095900 original size:895 final size:891
Alignment explanation
Indices: 16092761--16096615 Score: 4824
Period size: 894 Copynumber: 4.3 Consensus size: 891
16092751 GTTGACATAG
* ** * * *
16092761 GCATACGAAGTTCATT-CTCAGTCTAAGATCGGGTCAGACCGAGGGTTATGGTACCACATGCTGG
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * ** * * *
16092825 CCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACTAGGG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATC-GTGGAGCATCGCCAGAG
* * *
16092890 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGCAGCCGGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCC--GGGGGGTGTGCGCACATGATG
* *
16092955 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16093020 ACAGCCCCTTAAATAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
256 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
*
16093085 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * ** * *
16093150 TGTGCATGCCAACAAAAATACAAGGATAATTTCTACCACGTTTGGGGTGC-AAACTCCTTCCGAA
384 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAA
* *
16093214 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * **
16093279 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTTTGAATTTACGAGCTGTAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16093344 GCATTAGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTT
578 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *
16093409 GCGCATCCCGTCTCTCTGGTCGGCGTAGTACCC-ACCGCCCGCTCATTTCGTCGGTTGGCTCAGG
643 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTTTCGGTTGGCTTAGG
* * * * * *
16093473 CATACGGAGTTCATTTCTAGTCTAAGATCGGA-CCGAACTGAGGGTTGTGGCAGTAGGAT-AGGC
708 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC-GAGGGTTGCGGCAGCAGGATCA-GC
* * * ** * *
16093536 CGCACGTAGAGGGGGACCCG-CTCGATCTTCGGCTTGGGCATCCCGA-CCCTCTGCCCGACTGAG
771 AGCACGCAGAGGGGGACCCGAC-CAATCCCCGGCTTGCGCATCCC-ACCCCTCTGGCCGACTGAG
* *
16093599 TGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16093657 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTTCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
16093722 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGCCACCATCGTCGAATCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGT-GGAGCATCGCCAGAGA
* * * *
16093787 ACCTGACAGGCGGCATCGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16093852 GATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16093917 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
*
16093982 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * * * *
16094047 GCATGCCAAAAAAAATACAAGGATCATGTCTGCCAGGTTTGGAGG-CAAAACACTTTCCGAAAAA
387 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAA
* *
16094111 ATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCT
451 ATTTTAAAAAATCCCGAACC-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
16094175 TGTCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
16094240 ATTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16094305 GCATCCTGTCTCTTTGGCCGACGTAAAGTCCACCCACCCGCCCCGCCCGCCCGCTCGTTTCGTT-
645 GCATCCCGTCTCTCTGGTCGGCGT--AGT----------G-CCCGCCCGCCCGCTCGTTT-TTTC
* * * *
16094369 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AAGCCAGATCGAGGGTTGCGGTA
696 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCGAGGGTTGCGGCA
* * ** * * *
16094433 GCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCAATCCCTGGCTTGCGCATCTCGCCCCTCTGG
760 GCAGGATCAGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGG
* * *
16094498 CCGACTGAGCACCC-CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
825 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
16094562 AA
890 AA
** **
16094564 GCATACAAAGTTCATTCCCT-GTCTAAGATCGGACC-GAACCGAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATT-CCTAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATGCTG
** * * * *
16094627 GGCTCGACCATGTGCTGGTGCCGCATTTGTT-TTCGTCGGGGCACCTTCGTCGGAGCATCGCCGG
64 GGCTCGGGCATGTGCTGGTGCCGTATTT-TTCTTCATCGGGGCACCATCGT-GGAGCATCGCCAG
* * * *
16094691 AGAACCTGACTGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGCGGGTGTGCGCACAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC----GGG-GGGTGTGCGCACAT
** * * *
16094756 GATGTGCGATGGACGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCTTCATCAAACCTGGAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
16094821 ACTCACACCTTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCGATTAAAGTGTC
252 ACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
*
16094886 TGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT
316 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AAT
* *
16094951 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTAGGGCCAAAACTCCTTCC
380 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
16095016 GAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
445 GAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16095081 CGTCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
510 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * ** *
16095146 ATGGCATCGGCATACAAAAATATGAAGATGTTTCTAAACCCACCTACCACCCTATCGATCCACGA
575 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
16095211 CTTGCACATCTCGTCTCTCTGG-CTGGCGTAGTGCCCGCCCGTCCGCTCGTTTTTTCGATTGGCT
640 CTTGCGCATCCCGTCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTTTTCGGTTGGCT
* * * *
16095275 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGATTACGGTAGTAGGATCA
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCA
* *
16095340 ACAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAG
769 GCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAG
* *
16095405 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16095463 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
16095528 CTTGGGCATCTGCTAGTGCTGTATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG-TGGAGCATCGCCAGAGA
*
16095593 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGTGTGTGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
16095658 GATGGGTGCTGGTACTTGGGCCTTATGTTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
16095723 CCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT-CCTAGTAGCCATTAAAATGTTTGAAAT
259 CCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC-AGTAGCCATTAAAGTGTCTGAAAT
* * *
16095787 TGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTATTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTG
* * * *
16095852 TGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTTCTCCCGAAAAA
386 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
16095917 ATTTTAAAAAATCCCTAACCGGAAAAAGCTTT-GAAAATTGTGAAAAATAGAAAACGAGTCGTCT
451 ATTTTAAAAAATCCCGAACCCTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16095981 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
16096046 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16096111 GTATCCCGTCTCTTTGGTCGTCGTAGTGCCCGTCCGCCCGC-CTGCTCTTTTCATCGGTTGGCTT
645 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTC-G-T-TTTT--TCGGTTGGCTT
* ** * * * * *
16096175 AGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTGTGGCAGCAGGATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCAG
* * * ** ** **
16096240 CAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTTTGCATCCCGTCCCTCTAACCGACTGAGC
770 CAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGC
* **
16096305 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** *
16096362 GCATACGGAGTTCATT-CTCAGTCTAAGATCGGGTCGGACCGATAGTTACGGCAGAACATGCTGG
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* *
16096426 GCTCGGGCATGTGCTGGTGTCGTATTTTTC-T--TC---G-----TC--GGAGCATCGCCTGAGA
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTGGAGCATCGCCAGAGA
* * * *
16096478 ACTTGACTGGCGGCATTTGGGTTCCGGCGATCGGGGGGGCCGGCGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
16096543 GATGGGTGCTAGTGCTTGGCCCTTATATTTGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-
16096608 ACCCCTTA
258 ACCCCTTA
16096616 GGCATACCGA
Statistics
Matches: 2571, Mismatches: 327, Indels: 133
0.85 0.11 0.04
Matches are distributed among these distances:
885 130 0.05
886 6 0.00
888 2 0.00
893 2 0.00
894 455 0.18
895 455 0.18
896 143 0.06
897 11 0.00
898 150 0.06
899 427 0.17
900 8 0.00
906 9 0.00
907 185 0.07
908 129 0.05
909 8 0.00
910 8 0.00
911 441 0.17
912 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTGGAGCATCGCCAGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTTTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGA
GGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16099269 original size:26 final size:27
Alignment explanation
Indices: 16099239--16099301 Score: 96
Period size: 26 Copynumber: 2.4 Consensus size: 27
16099229 GTTGAGTTAG
16099239 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATACAGAAGTTCATTCCCAGTCTAA
*
16099265 GCATA-TGAAGTTCATTCCCAGTCTAA
1 GCATACAGAAGTTCATTCCCAGTCTAA
16099291 GCATAC-GAAGT
1 GCATACAGAAGT
16099302 GGACCGAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 1 0.03
26 33 0.97
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (27 bp):
GCATACAGAAGTTCATTCCCAGTCTAA
Found at i:16099906 original size:871 final size:873
Alignment explanation
Indices: 16096625--16100792 Score: 5097
Period size: 871 Copynumber: 4.7 Consensus size: 873
16096615 AGGCATACCG
* * * *
16096625 AGTTCATTCCCAGTCTAAGAT-CGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATACGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * **
16096689 ATGTGCTGGTGCCATATTTTTCTTCATCGAGGCATCATCG-CACCAGCATCACCGGAGAACCTGA
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCA-GAGCATCGTCGGAGAACCTGA
* * * * * *
16096753 TCGGCGACATTGGGTTTCCAGCGATCGGGGGGGCCGGGGGGTGTGTGCACACATGATGTCCGATG
130 CCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATG
* *
16096818 GGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCC
*
16096883 CTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
16096948 AATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * **
16097013 ACCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
16097078 AAAAAATCCCGAACA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCGT
453 AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * *
16097142 CAAACTTCACATGAAGACGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAT-GCATTGG
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAT-AAAAATGGCATT-G
* * *
16097206 TGC-A-TAGAAATATGAAGATGTGCCTAAACCAACCTACCACGCTATCGATCCATGACTTGTGCA
581 -GCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC---AC----G--
* * * * *
16097269 TCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCACCTACCGGCCCGGTCGTTTCGTCGGTTGGCTT
636 ----G---CT-T--CC-GC---AT----GCCCAGC--CC-GCCCGCTCCTTTCATCAGTTGGCTT
* * * * **
16097334 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTTGCAACAGGATCGA
680 AGGCACACAGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAGGATCGA
** * ** *
16097399 CAGCACACAGAGGAGGACCCGGCCGATCCCGGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGC
745 CAGCACGTAGAGGGGGACCCGGCTAATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
16097464 GCCCGCGCGCTCGTTTCGTGGGTTCACTTAGGCATAC-G-G---------AGT-T---C------
809 GCCCGCACACTCTTTTCATGGGTTGAGTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGA
* * *
16097508 A--T--TTCCGA-TCTAAGAT-C-AGACTGGACCAAGGGTTGCGGCAGCACATCCTGGGCTCGGG
1 AGTTCATTCCCAGTCTAAGATACGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
16097566 CATGTGCTGGTGCCGTAGTTTTCTTCGTCGGGGCACCATCGCCAGTGCATCGTCGGAGAATCTGA
65 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
* *
16097631 CCTGCGGCATTGGGGCTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
130 CCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
16097696 GT-CTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA-AACTCACACCCC
*** *
16097759 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTTAGTAGCCATTAAAGTGTCAGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
16097824 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** *
16097889 GTGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
16097954 AAAAATTCCCAAACTGCAAAAAGTTGCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
16098019 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCGTTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
16098084 ATGCAGAAATGTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTGC
583 AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-T-----T-C
*
16098149 CGTCTATCTGGCCGGCGTAGTGCCCGCCCGCCCACCTGCCCGTTCGTTTCATCGGTTGGCTTAGG
641 CG-C-A--T-GCC--C--A--GCCCGCCCG-----CT---C---C-TTTCATCAGTTGGCTTAGG
* ** * * * * ** *
16098214 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-ACAGGTTGCAGCAGTAGGATCGGCA
683 CACACAGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAACAGGATCGACA
* ** * * * *** * *
16098278 GCATGTAGAGGGGGACCCAACCGATTCCCGGCTTGTGCATCCCGCATGTCTGGCCGGTTGAGCAC
747 GCACGTAGAGGGGGACCC-GGCTAATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** * * * * * * *
16098343 CCTCACGTTCGTTTT-GTGGGTTGATTTAGGCGTACGGAGTTCATTCACAGTCTAAGCATACGG
811 CCGCACACTC-TTTTCATGGGTTGAGTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGA
*
16098406 AGTTCATTCCTAGT-TAAGAT-C-AGACTGGACCGAGGGTT-CTGGCAGCACATGCTGGGCTCGG
1 AGTTCATTCCCAGTCTAAGATACGA-ACTGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGG
* * * *
16098467 GCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACTATTGCCAAAGCATCGTCGGAGAACCTG
64 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTG
* * * *
16098532 ATCGACGACATTGGGGTTCCGGCGATCGGGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATG
129 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATG
*
16098597 GGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA-AACTCACACCC
*
16098661 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
16098726 ACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTCTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
16098791 AGCCAACAAAAATACAAGGATCAC--AT-CCTAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** *
16098853 TAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
16098918 TGAAACTTCACGTAAAGGCTTAAGGGACCATTGCTTGTATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16098983 CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATAGCGATCCACGGCTTACGCAT-
582 CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATG
* *
16099047 CCCA-CCCGCTCGCTCCTTTCATCACTTGGCTTAGGCACACAGAGCTCATTCCCAGTCTAAGATC
647 CCCAGCCCGCCCGCTCCTTTCATCAGTTGGCTTAGGCACACAGAGCTCATTCCCAGTCTAAGATC
* * * * * * *
16099111 GGATCGGACCGAGGATTACGGTAGCAGGATCGATAGCACGTAGAGAGGGACCCGGCTAATCCTCG
712 GGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGTAGAGGGGGACCCGGCTAATCC-CG
** *
16099176 GCTTGCGCATCCTACCCCTCTGGCCGG-TGAGTGCCCGCACACTCTTTTCATGGGTTGAGTTAGG
776 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCTTTTCATGGGTTGAGTTAGG
16099240 CATACAGAGTTCATTCCCAGTCTAAGCATATGA
841 CATACAGAGTTCATTCCCAGTCTAAGCATATGA
* *
16099273 AGTTCATTCCCAGTCTAAGCATACGAAGTGGACCGAGGGTTGCGACAG-AGCATGCTGGGCTCGG
1 AGTTCATTCCCAGTCTAAG-ATACGAACTGGACCGAGGGTTGCGGCAGCA-CATGCTGGGCTCGG
* * * *
16099337 GCATGTGCTGGTGCC-TCATTTTTCTTCGTCGAGGCACAATCG-CGGAGCATCATCGGAGAACCT
64 GCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
* *
16099400 GACCGGCGGCATTGGGGTTCCGGCGATCACGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGAT
128 GACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
16099465 GGATGCTGGTACGTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACAC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCC
* * *
16099530 CCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGAG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
16099595 ATACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
16099659 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
16099724 TAAAAAATCCCGAACAGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
452 TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
16099789 TGAAACTTCAAGTAAAGGCTTAAGGGACCATTGCATGTATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
16099854 CAAGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGTAT-
582 CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATG
* * *
16099918 CCCA-CCCGCCCACTCCTTTCGTCATTTGGCTTAGGCACACAGAGCTCATTCCCAGTCTAAGATC
647 CCCAGCCCGCCCGCTCCTTTCATCAGTTGGCTTAGGCACACAGAGCTCATTCCCAGTCTAAGATC
** *
16099982 GGACCGGACCGAGGGTTGCGGCAACAGGATCGGTAGCACCTAGAGGGGGACCCGGCTAATCCCGG
712 GGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGTAGAGGGGGACCCGGCTAATCCCGG
* *
16100047 TTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCTTTTCATGGGTTGACG-TAGG
777 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCTTTTCATGGGTTGA-GTTAGG
*
16100111 CATACAGAGTTCATTCCCAGTCTAAACATATGA
841 CATACAGAGTTCATTCCCAGTCTAAGCATATGA
* * *
16100144 AGTTCATTCCCAGTCTAAGCATACGAAGTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAG
1 AGTTCATTCCCAGTCTAAG-ATACGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
16100209 CATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
65 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
* * * * * *
16100274 CCGACAGCATTGGGGTTCCAGAGATTGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGG
130 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
16100339 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCTCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCT
* *
16100404 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAAT-GGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
16100468 CTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 CTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16100533 CCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTCA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * ** *
16100598 AAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
454 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16100663 AAACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCAAAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
16100728 CTCAGAAATATGAA-AGGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-GC
584 AGCAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATGC
16100791 CC
648 CC
16100793 TCTCTCTGGC
Statistics
Matches: 2889, Mismatches: 306, Indels: 191
0.85 0.09 0.06
Matches are distributed among these distances:
861 1 0.00
862 4 0.00
863 1 0.00
864 3 0.00
865 10 0.00
866 8 0.00
867 71 0.02
868 143 0.05
869 242 0.08
870 128 0.04
871 672 0.23
872 295 0.10
873 1 0.00
874 2 0.00
875 5 0.00
876 259 0.09
877 301 0.10
878 136 0.05
879 8 0.00
880 7 0.00
881 1 0.00
883 2 0.00
885 1 0.00
887 2 0.00
888 3 0.00
889 2 0.00
891 1 0.00
892 2 0.00
893 2 0.00
894 1 0.00
898 1 0.00
899 1 0.00
900 201 0.07
901 6 0.00
902 163 0.06
903 203 0.07
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
AGTTCATTCCCAGTCTAAGATACGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATGCCCA
GCCCGCCCGCTCCTTTCATCAGTTGGCTTAGGCACACAGAGCTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGTAGAGGGGGACCCGGCTAATCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCTTTTCATGGGTTGAGTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGCATATGA
Found at i:16100147 original size:26 final size:26
Alignment explanation
Indices: 16100118--16100172 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16100108 AGGCATACAG
*
16100118 AGTTCATTCCCAGTCTAAACATATGA
1 AGTTCATTCCCAGTCTAAACATACGA
*
16100144 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCCCAGTCTAAACATACGA
16100170 AGT
1 AGT
16100173 GGACCGAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAACATACGA
Found at i:16101097 original size:192 final size:187
Alignment explanation
Indices: 16100731--16101112 Score: 500
Period size: 192 Copynumber: 2.0 Consensus size: 187
16100721 ATTGGCACTC
*
16100731 AGAAATATGAAAGGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCTCT
1 AGAAATATGAAAGGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCCCT
* * * **
16100796 CTCTGGCTGACGTGGTGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCA
66 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCA
* ** *
16100861 TTCCTAGTATAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCATGT
131 TTCCCAGTATAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGT
* * * * *
16100918 AGAAATATG-AAGATGTGCCTAAACCTACCTACCACTCTATCGATCCACTGCTTGCGCATCCCGC
1 AGAAATATGAAAG-GGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCC-C
*
16100982 CTCTCTGGCCGGCGTAGTGCCCGCCTACCCGCCCGCTCGTTTCGTC-GATTGGCTTAGGCATACA
64 CTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACA
* * *
16101046 GAGTTCATTCCCAGTCTAAGATCGGATCGGA-CTGAGGGTTGCGACAGTAGGATCGGCAGCACGT
124 GAGTTCATTCCCAGTATAAGATCAGATCGGATC-GAGGGTTGCGACAGTAGGATCGACAGCACGT
16101110 AGA
1 AGA
16101113 GGGGGACCCG
Statistics
Matches: 168, Mismatches: 19, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
186 3 0.02
187 53 0.32
188 20 0.12
191 2 0.01
192 90 0.54
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (187 bp):
AGAAATATGAAAGGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCCCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCA
TTCCCAGTATAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGT
Found at i:16101228 original size:26 final size:26
Alignment explanation
Indices: 16101198--16101250 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16101188 GCTGACTTAG
16101198 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
16101224 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16101250 G
1 G
16101251 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16102132 original size:26 final size:26
Alignment explanation
Indices: 16102096--16102148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16102086 GTTTACTTAG
16102096 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16102122 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16102148 G
1 G
16102149 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16102776 original size:896 final size:887
Alignment explanation
Indices: 16100917--16103699 Score: 3838
Period size: 892 Copynumber: 3.1 Consensus size: 887
16100907 CGACAGCATG
* * *
16100917 TAGAAATATGAAGATGTGCCTAAACCTACCTACCACTCTATCGATCCACTGCTTGCGCATCCCGC
1 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
16100982 CTCTCTGGCCGGCGTAGTGCCCGCCTACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAG
66 CTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGG
* * *
16101047 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTT-GCGACAGTAGGATCGGCAGCACGTA
127 AGTTCATTCCCAGTCTAAGATCAGA-CGGAC-GAGGGTTAG-G-CAGCAGGATCGGCAGCATG-A
* *
16101111 GAGGGGGACCC-GACCGATCCCCGGCTT-ACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCA
187 GA-GGGGACCCAG-TCGATCCCCGGCTTGA-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
16101174 CGCTCGTTTCATGGGCTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
249 CGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
16101239 TCCCATTCTAAGATCAAACTGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTG
313 TCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * *
16101304 GTGCCGTATTTTTCTTCGTCAGGGCACCATCG-CTGGAGCATCGCCGGAGAAGCTGACCGGCGGC
378 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCG-CGGAGAACCTGACC-GCAGC
*
16101368 ATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGCATGTGCGCACATGATGTGC-AATGGGTGCTG
440 ATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGAA-GGGTGCTG
* *
16101432 GTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTCGAGAATTCACACCCCCTTAAA
502 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAA
* *
16101497 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGGAATGGGGACACTTT
566 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
16101562 TTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAAC
631 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
16101626 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
696 AAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
16101691 TCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACT
761 TCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
16101756 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACA
826 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
** *
16101818 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACTATATCGATCCACGGCTTGTGCATCCCGC
1 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
16101883 CTCTCTGGTCGGCATAGTGCCCGCCCGTCCGCTCGTTTCGTTGGTTTGGCTTAGGCATACGGAGT
66 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGG-TTGGCTTAGGCATACGGAGT
16101948 TCATTCCCAGTCTAAGATCAGACGGGATCGAGGGTTATGGCAGCAGGATCGGCAGCATGCAGAGA
130 TCATTCCCAGTCTAAGATCAGAC-GGA-CGAGGGTTA-GGCAGCAGGATCGGCAGCATG-AGAG-
* *
16102013 GGGACCCAGTCGATCCCCGGCTTGAGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCG
190 GGGACCCAGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
16102078 TTTCGTGGGTTTACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCGG
255 TTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** ** * *
16102143 TCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCACATACTGGGCTCGGGCATGTGTTGGTGCCG
319 TCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* ** * * *
16102208 CATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGACCGATAGCATTGGGG
384 TATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCG-CAGCATTGGGG
* * *
16102273 TTCCGGTGATCGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGAAGGGTGCTGGTACTTTGCC
447 TTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCC
* * * *
16102338 CTTACATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATGTGAG
512 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* ** * *
16102403 ATTTTACAGGTTTGCTACCAGTAGATATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGT
577 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* **
16102468 CCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCCGCCAAAAAAAATACAAG
642 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
** * * * ** *
16102533 GATCACGGCTACCAAGTTTGGTTCCAAAACTCTTTCCGAAAAAATTTTAAAAAATACTAAATTGT
707 GATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACAGC
* * *
16102598 AAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGG
772 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
16102663 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
837 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
16102714 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
1 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
*
16102779 CTCTCTGGCCGGCGTAGTGTCTGCCCGCCCGCCCGCCCGATCGTTTC-TTCGGTTGGCTTTGGCA
66 CTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCG--C--TCGTTTCGTT-GGTTGGCTTAGGCA
* * * * *
16102843 TATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACG-A-CAGCA-C-GCAG--T
122 TACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA-CGAGGGTTAGGCAGCAGGATCGGCAGCAT
* * * * *
16102902 --G-GGGGACGCAGTCGATCCCCGGCTTGTGCATCCCGTCCCTCTGGCCGACTGAGCGCCTGCAC
185 GAGAGGGGACCCAGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
16102964 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCACT
250 GCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * **
16103029 CTCAGTCTAAGATAAAACTGGACTGAGGGTTGCGGTAGCACATGCTACGCTCGGGCATGTGTTGG
314 CCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
* * *
16103094 TGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGCTGGAGAACCTGATCGGC-GACA
379 TGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-GGAGAACCTGA-CCGCAG-CA
* * * * *
16103158 TTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCACACATGATGTGCGATGGGGGCTGGTA
441 TTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTA
* *
16103223 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGCACCCCCTTAAAGAGC
505 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16103288 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
570 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16103353 AAATGGTCACAAAATGTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAT
635 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* ** *
16103418 ATACAAGGATCACAGCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCCT
700 ATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* * *
16103483 GAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCC
765 GAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
16103548 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
830 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * * * * *
16103606 CAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGT
1 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * *
16103671 CTCTCTGACC-GTGTAGTGCCCGCCTGCCC
66 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
16103700 ACCCGCTCGT
Statistics
Matches: 1672, Mismatches: 183, Indels: 68
0.87 0.10 0.04
Matches are distributed among these distances:
887 12 0.01
889 1 0.00
890 2 0.00
891 231 0.14
892 459 0.27
893 1 0.00
895 125 0.07
896 324 0.19
897 36 0.02
898 309 0.18
899 7 0.00
900 18 0.01
901 83 0.05
902 2 0.00
903 52 0.03
904 10 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACGGACGAGGGTTAGGCAGCAGGATCGGCAGCATGAGAGGGGACC
CAGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAAACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGCAGCATTGGGGTTCCGGCGA
TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACAGCAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
Found at i:16103037 original size:26 final size:26
Alignment explanation
Indices: 16102987--16103039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16102977 GTTGACTTAG
*
16102987 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
* *
16103013 GCATACGGAGTTCACTCTCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
16103039 G
1 G
16103040 ATAAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:16105615 original size:26 final size:26
Alignment explanation
Indices: 16105579--16105631 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105569 GTTGACTTAC
16105579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16105605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16105631 G
1 G
16105632 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16106813 original size:354 final size:362
Alignment explanation
Indices: 16106164--16107597 Score: 1691
Period size: 384 Copynumber: 3.9 Consensus size: 362
16106154 ACGATTGCAG
* * * * *
16106164 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAATCCCACCTA
* * * ** * *
16106229 CCACCCTATCGATCCATGACTTGCGTATCCCGTCTCACTGGCCGGTGTAGTGCCTGCCCGCCCGC
66 CCACCCTATCGATCCATG-CTTGCGCATCCCATCTCTCTGGCCGGCATAATGCCCGCCCGCCCGC
** * * *
16106294 CTGCCCGCTCGTTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTG
130 CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * *
16106359 GATCGAGGGTTGCAATAGCAGGATCGACAGCACGCAGAGGGGGACCTGGCAAATCCCCGGCTTGC
195 GATCGAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCTAATCCCCGACTTGC
16106424 GCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTC-T-TA-G-G-C
260 GCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTCTTGTACGAGTC
16106484 A-T-A-CA-AAGTTCATTCCCAGTCTAAGCAGAAATAT
325 ACTAAGCATAAGTTCATTCCCAGTCTAAGCAGAAATAT
*
16106518 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAATCCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAATCCCACCTA
* * * * * *
16106583 CCACCATATCTATCCACTGCTTGCGCATCCTATCTTTCTGGTCGGCATAATGCCCGCCCGCCCGT
66 CCACCCTATCGATCCA-TGCTTGCGCATCCCATCTCTCTGGCCGGCATAATGCCCGCCCGCCCGC
* * *
16106648 CCACCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGTGTTCATTCCCAGTCTAAGATCGGATCG
130 CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCG
* * *
16106713 GATCGAGGGTTGCGACAGCAGGATCGGCAGTATGCAGAGGGGGACC-CGATAAATCCCCGACTTG
195 GATCGAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCT-AATCCCCGACTTG
* * *
16106777 CTCATCCCACCCCTCTGCCCGACTGAGCGCCTGCACGCTCATTTCGTGTGTTGTCTTAGGCGTAC
259 CGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTCTT----GTAC
16106842 GGAGTTCTTTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCAGAAATAT
320 -GAG-----T-C-A--CTAAGCATA---AGTTCATTCCCAGTCTAAGCAGAAATAT
*
16106898 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAATCCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAATCCCACCTA
* * * *
16106963 CCACCCTATCGATCCATGGCTTGCGTATCCCATCTCTTTGGCCGACGTAATGCCCGCCCGCCCGC
66 CCACCCTATCGATCCAT-GCTTGCGCATCCCATCTCTCTGGCCGGCATAAT----GCCCGCCCGC
** *
16107028 CCGCCCACCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAG
126 CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGG
* * * * *
16107093 ACCGGATCAAGGGTTACGACAGTAGGATCGGTAGCATGCAGAGGGGGACCTGGCTGATCCCCGAC
191 ACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCTAATCCCCGAC
* * * *
16107158 TTGCGCATCCCGCCCCTTTGCCCGACTGAGCGCCTGCACGTTCGTTTCATGTATTGTCTTAGGCA
256 TTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTCTT--G--
16107223 TACGAAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGCAGAAATAT
317 TACG-AG-----T--CA--CTAAGC--AT-AAGTTCATTCCCAGTCTAAGCAGAAATAT
*
16107282 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAATCCCACCTA
1 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAATCCCACCTA
* * * * *
16107347 CCATCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCTGGCATAATGCCCGTCCGCCCGC
66 CCACCCTATCGATCCA-TGCTTGCGCATCCCATCTCTCTGGCCGGCATAATGCCCGCCCGCCCGC
* * * * **
16107412 CCACGCGCTCGTTTCATCGGTTGGCTTAGGCATACGATGTTAATTTACAGTCTAAGATCGGACCG
130 CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * * *
16107477 AATCGAGGGTTGTGAAAGTAGGATCGGTAGCATGCAGAGGGGCACCTGGCTGATCCCCGGCTTGC
195 GATCGAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCTAATCCCCGACTTGC
* * * *
16107542 GCATCCTGCCCCTCTACCCAACTGAGCGCCTGCACGCTCGTTTTGTGTGTTGTCTT
260 GCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTCTT
16107598 AGGCATACGG
Statistics
Matches: 930, Mismatches: 108, Indels: 58
0.85 0.10 0.05
Matches are distributed among these distances:
353 1 0.00
354 272 0.29
355 3 0.00
360 2 0.00
362 1 0.00
363 1 0.00
370 1 0.00
371 1 0.00
374 1 0.00
375 1 0.00
376 2 0.00
377 1 0.00
379 1 0.00
380 306 0.33
382 1 0.00
383 1 0.00
384 327 0.35
385 4 0.00
386 2 0.00
387 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (362 bp):
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAATCCCACCTA
CCACCCTATCGATCCATGCTTGCGCATCCCATCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCC
CACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGG
ATCGAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCTAATCCCCGACTTGCG
CATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGCTCGTTTCGTGTGTTGTCTTGTACGAGTCA
CTAAGCATAAGTTCATTCCCAGTCTAAGCAGAAATAT
Found at i:16106868 original size:26 final size:26
Alignment explanation
Indices: 16106839--16106890 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16106829 GTCTTAGGCG
* *
16106839 TACGGAGTTCTTTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
16106865 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
16106891 GAAATATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:16107217 original size:384 final size:380
Alignment explanation
Indices: 16106490--16107654 Score: 1715
Period size: 380 Copynumber: 3.1 Consensus size: 380
16106480 AGGCATACAA
*
16106490 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
1 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
* * *
16106555 AATATGAAGATGTGCCTAATCCCACCTACCACCATATCTATCCACT-GCTTGCGCATCCTATCT-
66 AATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCA-TGGCTTGCGCATCCCATCTC
* * * *
16106618 TTCTGGTCGGCATAATGCCCGCCCGCCCGTCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAT
130 TT-TGGCCGGCATAATGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
16106683 GGTGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGTATGC
194 GGTGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCATGC
* * * * *
16106748 AGAGGGGGACC-CGATAAATCCCCGACTTGCTCATCCCACCCCTCTGCCCGACTGAGCGCCTGCA
259 AGAGGGGGACCTGGCT-GATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCA
* * * *
16106812 CGCTCATTTCGTGTGTTGTCTTAGGCGTACGGAGTTCTTTCCTAGTCTAAGCATACGG
323 CGCTCGTTTCGTGTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
16106870 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
1 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
* *
16106935 AATATAAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCATCTCT
66 AATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
* * **
16107000 TTGGCCGACGTAATGCCCGCCCGCCCGCCCGCCCACCCATTCGTTTCGTCGGTTGGCTTAGGCAT
131 TTGGCCGGCATAAT----GCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
16107065 ACGGTGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACGACAGTAGGATCGGTAGCAT
192 ACGGTGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCAT
*
16107130 GCAGAGGGGGACCTGGCTGATCCCCGACTTGCGCATCCCGCCCCTTTGCCCGACTGAGCGCCTGC
257 GCAGAGGGGGACCTGGCTGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGC
* * * * * *
16107195 ACGTTCGTTTCATGTATTGTCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGA
322 ACGCTCGTTTCGTGTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
16107254 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAA
1 AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
* * *
16107319 AATATGAAGATGTGCCTAATCCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCATCTCT
66 AATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
* * * * * *
16107384 CTGGCTGGCATAATGCCCGTCCGCCCGCCCACGCGCTCGTTTCATCGGTTGGCTTAGGCATACGA
131 TTGGCCGGCATAATGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * *
16107449 TGTTAATTTACAGTCTAAGATCGGACCGAATCGAGGGTTGTGAAAGTAGGATCGGTAGCATGCAG
196 TGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCATGCAG
* * * * *
16107514 AGGGGCACCTGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTACCCAACTGAGCGCCTGCACGC
261 AGGGGGACCTGGCTGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGC
*
16107579 TCGTTTTGTGTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
326 TCGTTTCGTGTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
16107634 AGTTCATTCCCAGTCTAAGCA
1 AGTTCATTCCCAGTCTAAGCA
16107655 TACGGAGTTC
Statistics
Matches: 703, Mismatches: 75, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
379 1 0.00
380 359 0.51
381 2 0.00
384 339 0.48
385 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (380 bp):
AGTTCATTCCCAGTCTAAGCAGAAATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
AATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
TTGGCCGGCATAATGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
TGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCATGCAG
AGGGGGACCTGGCTGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCTGCACGC
TCGTTTCGTGTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:16107284 original size:30 final size:26
Alignment explanation
Indices: 16107220--16107274 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
16107210 ATTGTCTTAG
*
16107220 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
16107246 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
16107272 GCA
1 GCA
16107275 GAAATATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:16107630 original size:26 final size:26
Alignment explanation
Indices: 16107600--16107673 Score: 148
Period size: 26 Copynumber: 2.8 Consensus size: 26
16107590 GTTGTCTTAG
16107600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16107626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16107652 GCATACGGAGTTCATTCCCAGT
1 GCATACGGAGTTCATTCCCAGT
16107674 ATAAAATCGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.