Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 81 of 117
Found at i:16108799 original size:13 final size:12
Alignment explanation
Indices: 16108765--16108800 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
16108755 GTGCTGGTAC
16108765 TTGGCCCTTATA
1 TTGGCCCTTATA
16108777 TTGGCCCTTATA
1 TTGGCCCTTATA
16108789 TTGGCCCCTTAT
1 TTGG-CCCTTAT
16108801 CCCTCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.42
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:16109474 original size:26 final size:26
Alignment explanation
Indices: 16109438--16109488 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109428 TGACTTACGT
16109438 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
16109464 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16109489 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16110368 original size:26 final size:26
Alignment explanation
Indices: 16110338--16110415 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
16110328 GTTGTCTTAG
16110338 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16110364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16110390 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16110416 TATCGGACCG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16112091 original size:877 final size:873
Alignment explanation
Indices: 16110390--16116044 Score: 6693
Period size: 904 Copynumber: 6.4 Consensus size: 873
16110380 CCCAGTCTAA
* * * * * *
16110390 GCATACGAAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * *
16110455 CTCGGGCATGTGTTGGTGATGCATTTTTCTTCGTCAGGGCACCATCGTCAGAGCATCGCCGTAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
*
16110520 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGATC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGACCGAGGGGGTGTGCGCACATGATGTG
* *
16110584 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAGCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16110649 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16110714 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
16110779 TGCATGCCAACAAAAATACAAGGATCGCGTCTACCATGTTTAGGGCCAAAACTCTTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * ** * * *
16110844 ATTTCAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATTGTGAAGAATAGAACACGAGTCGTCTT
455 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
16110909 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGACCAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16110974 TTGGGACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16111039 CATCCCGTCACTCT-GCTCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
650 CATCCCGTCTCTCTAGC-CGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * * * *
16111103 TTTAGGCATACGGAGCTCATTCCTAGTCTAAGATCGGACC-GAACCAAGGGTTGCAGCAGTAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAA-CGAGGGTTACGGCAGCAGGA
* * ** * * * * *
16111167 TCGACAACACGCAGAGGGGGACCCGGCCAATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACT
774 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
*
16111232 GAGCGCCCGCACGCTCGTTTCGTGGGTCGACTTAG
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16111267 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * * * ** *
16111332 CTCAAGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGTACCACCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
16111397 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGCCCGAGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGACCGAGGGGGTGTGCGCACATGATGTGC
16111462 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
16111527 CCCCCTTAAAGAGCATTTGATATTTTACAGGCTTGCTGCCAATATCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16111592 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
*
16111657 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCCTTCTGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAA
* *
16111721 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
16111786 GCCATGAAACTTCACTTGAAGGCTTAAAGGACCATTGTATG-ATCTTACAAGCCATAAAAAAGGA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT-TTACAAGCCATAAAAATGGC
*
16111850 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
16111915 GCATCCTGTGTCCCTAGCCAGCATAGTGCCCGCCCCCCCGCCCACCCGCTCATTTCATCGGTTGG
649 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * *
16111980 CTTAGGCGA-ACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATGGTAGCAAGA
710 CTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAGCAGGA
* * * * * * * * * *
16112044 TCGGTAGCACGTAGAGAGGGACTCG-GCTGATCCTTGGCCTGCGCATCCCGCCCTTCTGGTCGGC
774 TCGGCAGCACGCAGAGGGGGACCCGATC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
*
16112108 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16112144 GCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTGCCAGTCTATGATTGTACCGAAC
1 GCATACGGAGTTCATTCCCAGTCT----A-A--GA--TCA--G--A-TC----A--G-ACC--A-
* *
16112209 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * * *
16112274 CACCATTACCGGAGCATCGTCGGAGAACCTGACCGACGACATTGAGGTTTCGGCGATCGGGGGGG
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGA
* * *
16112339 CCGGGGGGGTGTGGGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16112404 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16112469 CCAGTGGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16112534 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCATA-AAAAATTCAAGGATCACGTCTACCAAG
364 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAG
* * ** * ***
16112598 TTAGGGACCAAAACTCCTTGGGAAAAAAGTTTAAAAAATCCCAAACCGTGAAAAGTTTCAAAAAA
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTC-AAAAA
* *
16112663 T-GTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
492 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
**
16112727 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
16112792 CTACCACCCTATCGATCCACGGCTTGTGCATCCCGTTTCTCTGGACGGCGTAGTGCTCATCCGCC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTG--C--CCGCC
* * * * *
16112857 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACAGAGTTCAGTCCCAGTCTAAGATTGGA
683 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*** * * * * *
16112922 --GTGAACTGAGGGTTGTAGCAGCAGGATTGACAACATGCAGAGGAGGACCCGATCGATCCTCGG
748 CCG-GAAC-GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGG
* * * *
16112985 CTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
811 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16113048 GCATACGGAGTTCATTCCCAGTCTAGCGATACGAAGTTCATTCCCAATCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T--C--T---AAG----------ATC--AGATC--A---GAC
* * * * *
16113113 CGAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
40 CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * * * * * *
16113178 TACCATCGTCGGAGCATCGCCGAAGAACCTGACTGGCGGTATTGGGGTTCCGATGATCTGGGGCC
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAC
* * * *
16113243 CGGGCGGGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGTCCCCTA
170 CGAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
16113308 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16113373 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
16113438 TTCGAGCTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** * *
16113503 TTGGGGTCAAAACTGCTT--GTAAGAAAATTTTAAAAAATCTAAAATCGTA-AAAAAATTT-AAA
429 TTGGGGCCAAAACTCCTTCCG-AA-AAAATTTTAAAAAATCCCAAA-C-CACAAAAAGTTTCAAA
* * * * *
16113564 AATCGTGAAAAATAGAAAACGAGTCGTCTTGTCTTGAAACTTCATGCGAAGGCTTAAAGGACCAT
490 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
16113629 TGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAGATATAAAGATGTGCCTAAACCC
555 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
16113694 ACCTACCACCCTATTGATCCACAGCTTGCACATCCCGTCTCTCTAGCCGGCGTA--G--AGCCCG
620 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCG
* * *
16113755 CCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
685 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
16113820 TG-ACTGAGGGTTACGACAGCAGGATAGGCAGCACACAGAGGGGGACCCGATCGATCC-CTGACA
750 GGAAC-GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTC-GGCT
* ** * * *
16113883 TGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCATGTGTTGACTTAG
813 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
16113944 GCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
16114009 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGG------CACC--A--A-CGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
16114063 ACCTGACCAGCGGCATTGGGGGTTCCGACGATCGGTGGGGCCG-GGGGATGTGCACACATGATGT
131 ACCTGACCGGCGGCATT-GGGGTTCCGACGATCGG-GGGACCGAGGGGGTGTGCGCACATGATGT
* * *
16114127 GTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16114192 CACCCCCTTAAATAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16114255 TTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTT
324 -TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
16114320 TGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAA
388 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
16114385 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCCTGAAGAATAAAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16114450 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16114515 CATTTTGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAGGGCTT
583 CA-TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16114580 GCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCTCCCGCTCATTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * ** * * ** * * *
16114645 GAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAACTGAAAATAGGGTTGCGACAGCAGGATCA
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAGCAGGATCG
* * * * *
16114710 GTAGCACGCAGAAGGGGACTCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAG
777 GCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
16114775 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16114807 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCTAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---------A-TC--AGATCAGACC--A-
* * * * *
16114872 TGAGGGTTGTGGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
16114937 CACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGATGATCAGGGGGA
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGA
* * * * *
16115002 CC-AGAGGGTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGGCCTTATATTGGGCCCCTA
169 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16115066 TCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16115131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTTTACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
16115196 TTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAGGGATTACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
16115261 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTAAACCACAAAAGGTTTCAAAAATC
429 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATC
** * *
16115326 GTGAAAAATAGAAAATTAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTA
494 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
16115391 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
16115456 ATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAATGCCCGCCCGCCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * *
16115521 TCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
689 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAA
* * * * *
16115586 CAAGGGTTA-GGACAACAGGATTGGCAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTGTGC
754 CGAGGGTTACGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGC
* * * * * *
16115650 ATCTCGCTCCTCTGGTCGACTGAGCGCCCGGACGCTTGTTTCGTGGGTTAACTTAG
818 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16115706 GCATACAGAGTTTATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC----A---GACC--A-
* * * * * *
16115771 CGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGC-GGTGCCGTATTTCTCTTCGTCGAGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * * *
16115835 CACCATCACCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTTCGATGATC-----A-
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAC
* *
16115894 -GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT
170 CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16115958 CCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16116023 CAGTAGCAATTAAAGTGTCTGA
300 CAGTAGCCATTAAAGTGTCTGA
16116045 GATTTTACAG
Statistics
Matches: 4123, Mismatches: 501, Indels: 294
0.84 0.10 0.06
Matches are distributed among these distances:
856 1 0.00
857 12 0.00
858 257 0.06
859 204 0.05
860 18 0.00
861 7 0.00
862 1 0.00
863 181 0.04
864 4 0.00
865 1 0.00
868 1 0.00
869 1 0.00
870 62 0.02
871 1 0.00
872 2 0.00
873 6 0.00
875 4 0.00
876 10 0.00
877 769 0.19
878 5 0.00
881 3 0.00
882 7 0.00
884 9 0.00
886 3 0.00
887 3 0.00
888 1 0.00
889 54 0.01
890 4 0.00
891 147 0.04
892 4 0.00
893 1 0.00
894 2 0.00
895 6 0.00
896 185 0.04
897 4 0.00
898 82 0.02
899 420 0.10
900 301 0.07
901 3 0.00
902 3 0.00
903 124 0.03
904 1165 0.28
905 19 0.00
906 3 0.00
908 5 0.00
909 8 0.00
910 2 0.00
911 2 0.00
912 1 0.00
914 3 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGACCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16112181 original size:26 final size:26
Alignment explanation
Indices: 16112145--16112194 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16112135 TTGACTTAGG
16112145 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
16112171 CATACGGAGTTCATTGCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
16112195 TGATTGTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16113557 original size:18 final size:20
Alignment explanation
Indices: 16113534--16113575 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
16113524 AGAAAATTTT
16113534 AAAAAATCT-AAAATCGT-A
1 AAAAAATCTAAAAATCGTGA
*
16113552 AAAAAATTTAAAAATCGTGA
1 AAAAAATCTAAAAATCGTGA
16113572 AAAA
1 AAAA
16113576 TAGAAAACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (20 bp):
AAAAAATCTAAAAATCGTGA
Found at i:16114438 original size:26 final size:26
Alignment explanation
Indices: 16114383--16114439 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16114373 CTCCTTCCGA
* *
16114383 AAAAATTTTAAAAAATCCTGAACCAC
1 AAAAAGTTTAAAAAATCCTGAACAAC
* * *
16114409 AAAAAGTTTCAAAAATCCTGAAGAAT
1 AAAAAGTTTAAAAAATCCTGAACAAC
16114435 AAAAA
1 AAAAA
16114440 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.14, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCCTGAACAAC
Found at i:16114843 original size:26 final size:26
Alignment explanation
Indices: 16114807--16114859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16114797 GTTGACTTAG
* *
16114807 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
16114833 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
16114859 G
1 G
16114860 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:16115735 original size:26 final size:26
Alignment explanation
Indices: 16115706--16115758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16115696 GTTAACTTAG
16115706 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
*
16115732 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
16115758 G
1 G
16115759 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:16115793 original size:899 final size:898
Alignment explanation
Indices: 16113944--16116044 Score: 3041
Period size: 899 Copynumber: 2.4 Consensus size: 898
16113934 GTTGACTTAG
**
16113944 GCATACGGAGTTCT-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTT-TATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
16114008 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTTGTCG-GG-----GCACC--A--A-CGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAG
* * * *
16114062 AACCTGAC-CAGCGGCATTGGGGGTTCCGACGATCGGTGGGGCCGGGGGATGTGCACACATGATG
130 AACCTGACTGA-CGGCATT-GGGGTTCCGATGATCAG-GGGGCC-GGGG-TGTGCGCACATGATG
* * * *
16114126 TGTGATGGGTGCTGGTACTT-GGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 TGCGATGGGTGCTAGTACTTGGGC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCT
*
16114190 CACACCCCCTTAAATAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-A
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
16114253 AATTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTT
319 AATTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTT
*
16114318 TTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGA
384 TTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAA
* *
16114383 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCCTGAAGAATAAAAAACGAGTCG
449 AAAAATTTTAAAAAATCCTAAACCACAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCG
* *
16114448 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAAT
* *
16114513 GGCATTTTGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAGGGC
579 GGCATTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
*
16114578 TTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCTCCCGCTCATTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTAGTCGGCGTAATGCCCGCCCGCCCTCCCGCTCATTTCGTCGGTTGG
* * *
16114643 CTGAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAACTGAAAATAGGGTTGCGACAGCAGGAT
709 CTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACAGAAAATAGGGTTGCGACAACAGGAT
* *
16114708 CAGTAGCACGCAGAAGGGGACTCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTG
774 CAGCAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTG
* *
16114773 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
16114833 GCATACAGAGTTAATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
*
16114898 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
*
16114963 ACCTGACTGACGGCATTGGGGTTCCGATGATCAGGGGGACCAGAGGGTGTGCGCACATGATGTAC
131 ACCTGACTGACGGCATTGGGGTTCCGATGATCAGGGGG-CC-G-GGGTGTGCGCACATGATGTGC
*
16115028 GATGGGTGCTAGTACTTGGGCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAGCTCACA
193 GATGGGTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACA
16115093 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-T
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
* * *
16115157 GGGGACACTTTTTTCAAATGTTTACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTG
323 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTG
* * * **
16115222 TGCATGCCAACAAAAATACAGGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 TACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAAA
* * * ** *
16115287 ATTTTAAAAAATCCTAAACCACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATTAGTTGTCTT
453 ATTTTAAAAAATCCTAAACCACAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTT
16115352 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
** * *
16115417 -TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
583 TTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
* *
16115481 GCATCCCGTCTCTCT-GGCTGGCGTAATGCCCGCCCGCCCGT-CCGCTCCTTTCGTCGGTTGGCT
648 GCATCCCGTCTCTCTAGTC-GGCGTAATGCCCGCCCGCCC-TCCCGCTCATTTCGTCGGTTGGCT
* ** * **
16115544 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCA-AGGGTTAG-GACAACAGGAT
711 GAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAACAGAAAATAGGGTT-GCGACAACAGGAT
** * * * ** * * *
16115607 TGGCAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCTCGCTCCTCTGGTCGACTG
774 CAGCAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTG
* ** *
16115672 AGCGCCCGGACGCTTGTTTCGTGGGTTAACTTAGGCATACAGAGTTTATTCCCAGTCTAA
839 AGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
16115732 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * **
16115797 CTCAGGCATGTGC-GGTGCCGTATTTCTCTTCGTCGAGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
*
16115861 ACCTGACTGACGGCATTGGGGTTTCGATGATCA--GGG--GGGGTGTGCGCACATGATGTGCGAT
131 ACCTGACTGACGGCATTGGGGTTCCGATGATCAGGGGGCCGGGGTGTGCGCACATGATGTGCGAT
*
16115922 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCC
196 GGGTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCC
* *
16115987 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCAATTAAAGTGTCTGA
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16116045 GATTTTACAG
Statistics
Matches: 1085, Mismatches: 105, Indels: 42
0.88 0.09 0.03
Matches are distributed among these distances:
889 87 0.08
890 2 0.00
891 142 0.13
892 1 0.00
895 4 0.00
896 3 0.00
897 1 0.00
898 85 0.08
899 444 0.41
900 312 0.29
901 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACTGACGGCATTGGGGTTCCGATGATCAGGGGGCCGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTAGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTAC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCTAAACCACAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGTCGGCGTAATGCCCGCCCGCCCTCCCGCTCATTTCGTCGGTTGGCTGAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAAACAGAAAATAGGGTTGCGACAACAGGATCAGCAGC
ACGCAGAAGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16116298 original size:26 final size:26
Alignment explanation
Indices: 16116261--16116312 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116251 GTTAACTTAG
*
16116261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16116287 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16116313 AATCGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16117189 original size:26 final size:26
Alignment explanation
Indices: 16117153--16117205 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117143 GTTGACTTAG
16117153 GCATACGGAGTTAATTCCCAGCCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
* * *
16117179 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
16117205 G
1 G
16117206 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGCCTAA
Found at i:16118092 original size:26 final size:26
Alignment explanation
Indices: 16118053--16118112 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
16118043 GTTGACTTAG
*
16118053 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGATTTCATTCCCAATCTAA
*
16118079 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGATTTCATTCCCAATCTAA
16118105 G-AT-CGGAT
1 GCATACGGAT
16118113 CAGGCCGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAATCTAA
Found at i:16118984 original size:25 final size:26
Alignment explanation
Indices: 16118955--16119006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16118945 GTTGACTTAG
*
16118955 GCATACG-AGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
16118980 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
16119006 G
1 G
16119007 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:16119549 original size:902 final size:899
Alignment explanation
Indices: 16116071--16120602 Score: 6023
Period size: 901 Copynumber: 5.1 Consensus size: 899
16116061 CCTTATATTG
* ** *
16116071 GCCCGACT-GCTCCTTTCGTCGGTTGGCTTAGGCATACTAAGTTCATTCCCAGTCTAAGATCAGA
1 GCCCG-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *** ** * * * *
16116135 CCGGACCAAGGGTTATGGCAGCAGGATCGGTATCACGAAGAGGGGGACCCGATCGATCCCCAGCT
65 CCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * * *
16116200 TGCGCATCTCTCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCAT
130 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
16116265 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAG
195 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* * * *
16116330 GGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACC
260 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-GGAGCACC
* *
16116395 A--T-----CAT--CGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGG
324 ATCTCGGAGCATCCCGGAGAACCTGACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
16116451 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
388 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
16116516 TCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAATTGAGATTTTATAGGTTTGCTACCAGTAG
453 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
16116581 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAAATCTTATACACTTCGAG
518 CCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTTGAG
* *
16116646 TTTTTAGGTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCACA-TTTGGG
582 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-AGTTTGGG
** * * * * *
16116710 AACAAAA-TTCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAGAGTTTCAAAAATCGTGAA
646 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAA
* * *
16116774 AAATAGAAAATGAGTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
16116839 TTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
16116904 CCTATCGATCCACGGCTTGCGCGTCCTGTCTCTCTGGCCAACGTTGTGCCCGCCCGCCC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCC
* * * * *
16116963 GTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
16117028 CGGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTT
66 CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * * *
16117093 ACGCATCCTACCCCTCTGGCTGACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
131 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * **
16117158 CGGAGTTAATTCCCAGCCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATTAGACCGAGG
196 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
* * * * *
16117223 GTTGA-GGCAGCACTTGCTGGGCTCGAGCATGTGCTGGTACCGTATTTTTCTAT-GCTG-GCACC
261 GTT-ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT-TCGCGGAGCACC
* * *
16117285 ATCGTCGGAGCATCGCCAGAGAACCTGACCTGCGGCATTGGGGTTCCGGTGATC-GGGGGGCTGG
324 ATC-TCGGAGCATC-CCGGAGAACCTGACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGC-CG
16117349 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
385 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
16117414 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
450 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
16117479 TAGCCATTAAAATGTCTGAAATGGGGACATTTATTTGAAATGGTCACAAAATCTTGTACACTTTG
515 TAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* * *
16117544 ACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAGAATACAAGGATCATGTCTACCAAG-TTGG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
16117608 GGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAGAGTAAAAAGTTTCGAAAATCATGA
645 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGA
*
16117673 AAAATATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
710 AAAATA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
16117738 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACC
774 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * *
16117803 ACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGAGGGCGTCA-TGCTCGCCCGTCG
839 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCTCGCCCGCCC
* * * * *
16117864 GCCCGCCCGCTCATTACGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGAC
1 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * ** * * *
16117929 CAGACCGAGGGTTGGGGCAGTAAAATCGGCAGCACACAGA-GGGGACCCAGTCGATCCCCGGCTT
66 CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * *
16117993 ACGCATCCCACCCCTCTGACCGGCTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATA
131 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
16118058 CGGAGTTCATTCCCAATCTAAGCATACGGATTTCATTCCCAGTCTAAGATCGGATCAGG-CCGAG
196 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAG
* * * * * * *
16118122 GGTTACGGCAGCACTTGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGGTACC
260 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGAGCACC
16118187 ATCGTCGGAGCATCGCCAGGAGAACCTGACCTGCGGCATTGGGGTTCCGGC-ATC-GGGGGGCCG
324 ATC-TCGGAGCATC-CC-GGAGAACCTGACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* * **
16118250 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATAATATCCCCCTATCCC
385 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
16118315 TCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTTAGATTTTATAGATTTGCTGCCAG
450 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
16118380 TAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAACTCTTGTACACTTCG
515 TAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
16118445 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
16118510 TGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGA
645 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGA
16118575 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
710 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
16118640 TTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATGTTAAGATGTGCCTAAACGCACCTACCA
775 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16118705 CCCTATCGATCCATGGCCTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCCGCCT
840 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCC
* * * *
16118765 GCCCGCTCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATTGGAC
1 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * * * * ** *
16118830 CGGACTAACGGTTGCAGCAGCAAGATCGACATCACCCAGAGGGGGACTTGGCCGATCCCCGGCTT
66 CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* *
16118895 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
131 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
16118960 C-GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGCCTAAGATCGGATCGGACCAAGG
196 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
* *
16119024 GTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCACCA
261 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CGGAGCACCA
*
16119089 TCTCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGGCCGG
325 TCT-CGGAGCATC-CCGGAGAACCTGACCG-CGGCATTGGGGTTCCGGCGATC-GGGGGGGCCGG
* *
16119154 GGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
16119219 CGTCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * * * * *
16119284 AGCCATGAAAGTATCTGAAATGGAGACATTTTTTTGAAATGGTTACAAAA-CTTATAAACTTTGA
516 AGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
16119348 GTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACCAAGTTTGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
16119413 GCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAA
646 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAA
16119478 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
16119543 TTACAAGCCATAAAAATGGCCTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
16119608 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTGC-CTGTCCGCCC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTC-GCCCGCCC
* * * * *
16119667 ACCCGC-CGCTTGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
1 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * * *
16119731 CAAACCGAGGGTTG-TGACAGCAGGATCGACAGCAGGCAGAGGGGGACCCGGACGATCCCCGGCT
66 CGGACCGAGGGTTGCAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * * *
16119795 TGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCCTTTCGTGGGTTGAC-T-----T
130 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
16119854 A--G-G--CA-T---A--C--AG---A-G--G-TCATTCCCAGTCTAAGATCGGAGCGGACCGAG
195 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* * *
16119899 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGAGGCACC
260 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGA-GCACC
* * * * *
16119964 ATCGCCGGAGCATCCATGGAGAACCTGACAGGTGGCATTGGGGTTCCGGCGATCGGGGGGGTCGG
324 ATC-TCGGAGCATCC-CGGAGAACCTGAC-CGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* * *
16120029 GGGGCTGTGCGCCCATGATGTACGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCC-ATCCC
386 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
16120093 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
450 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
16120158 TGGCCATTAAAGTGTCTAAAATAGGGGACACTTTTTTTCAAATGGTAACAAAATCTTGTACACTT
515 TAGCCATTAAAGTGTCTAAAAT-GGGGACA-TTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16120223 CT-AGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCGCATCTACCAAGTT
578 -TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
16120287 TGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCG
642 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCG
* *
16120352 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAGA-TTCACGTGAAAGCTTAAGGGACCATTGTA
707 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * * *
16120416 TGAATTTACAGGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAATCCACCT
771 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
16120481 ACCACCC-ACTCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC-AGCGTAGTG-TCCGCCCAC
836 ACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCT-CGCCCGC
16120543 CC
898 CC
* * * *
16120545 ACCTGCTCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16120603 CATACGAAGT
Statistics
Matches: 3220, Mismatches: 368, Indels: 117
0.87 0.10 0.03
Matches are distributed among these distances:
875 101 0.03
876 185 0.06
877 23 0.01
878 304 0.09
879 50 0.02
880 1 0.00
883 2 0.00
885 1 0.00
887 1 0.00
890 7 0.00
891 4 0.00
892 266 0.08
893 3 0.00
894 1 0.00
895 2 0.00
898 3 0.00
899 13 0.00
900 343 0.11
901 1224 0.38
902 486 0.15
903 200 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGAGCACCAT
CTCGGAGCATCCCGGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCC
Found at i:16120606 original size:26 final size:26
Alignment explanation
Indices: 16120576--16120628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16120566 GTTGGCTTAG
*
16120576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16120602 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16120628 G
1 G
16120629 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16121341 original size:745 final size:745
Alignment explanation
Indices: 16119867--16121347 Score: 2310
Period size: 745 Copynumber: 2.0 Consensus size: 745
16119857 CATACAGAGG
* *
16119867 TCATTCCCAGTCTAAGATCGGAGCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
1 TCATTCCCAGTCTAAGATCGGAGCGGACCGAGGCTTGCGGCAGCACATGCTGGGCTCAGGCATGT
* *
16119932 GCTGGTGCCGTATTTTTCTTCGCTGAGGCACCATCGCCGGAGCATCCATGGAGAACCTGACAGGT
66 GCTGGTGCCGTATTTTTCTTCGCTGAGGCACCATCACCGGAGCATCCA-GGAGAACCTGACAGGC
* * * *
16119997 GGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGCTGTGCGCCCATGATGTACGATGGGTGCT
130 AGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGCTGTGCACACATGATGTACGATGGGTGCT
* *
16120062 GGTACTGGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
195 GGAACTGGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* *
16120127 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAGTGTCTAAAATAGGGGACACTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGGACACTTT
* * *
16120192 TTTTCAAATGGTAACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATATTTTTGTGCATGCCAA
325 TTTTCAAATGGTAACAAAATCTTGTACACTTCAAGTTTTTAACTGAATATTTTTATGCATGCCAA
* * *
16120257 AAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAA
390 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
* * *
16120322 ATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAGA
455 ATCTCAAACCGTAAAAAGATTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAGA
* * * *
16120387 TTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAAGGCATTGGCACGTA
520 TTCACGTGAAAGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTCGCACGCA
* *
16120452 GAAATATGAAGATGTTCCTAAATCCACCTACCACCCACTCGATCCACGGCTTGCGCATCCCATCT
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCACTCGATCCACGGCTTGCGCATCCCATCT
* * * *
16120517 CTCTGGCCAGCGTAGTGTCCGCCCACCCACCTGCTCGCTCATTTCATCGGTTGGCTTAGGCATAC
650 CTCTGGCCAGCATAGTGCCCGCCCACCCACCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATAC
16120582 GGAGTTCATTCCCAGTCTAAGCATACGAAGT
715 GGAGTTCATTCCCAGTCTAAGCATACGAAGT
** *
16120613 TCATTCCCAGTCTAAGATCGGATTGGACCGAGGCTTGCGGCAGCACATGCTGGGCTCAGGCTTGT
1 TCATTCCCAGTCTAAGATCGGAGCGGACCGAGGCTTGCGGCAGCACATGCTGGGCTCAGGCATGT
* *
16120678 GCTGGTGCCGTATTTTTCTTCGTCT-AGGCACCATCACCGGAGCATCGCCA-GAGTACCTGACCG
66 GCTGGTGCCGTATTTTTCTTCG-CTGAGGCACCATCACCGGAGCAT--CCAGGAGAACCTGACAG
* * *
16120741 GCAGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
128 GCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGCTGTGCACACATGATGTACGATGGGTG
* *
16120806 CTGGAACTTGGCCC-TATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
193 CTGGAACTGGGCCCTTATATTGGCCCC-CATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
16120870 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACAC
257 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGGACAC
* *
16120934 -TTTTTTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTATGCATGC
322 TTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAAGTTTTTAACTGAATATTTTTATGCATGC
* *
16120998 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCGAAAAAATTTTA
387 CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTT-CCAAAAAAATTTTA
16121063 AAAAATCTCAAACCGTAAAAAGATTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
451 AAAAATCTCAAACCGTAAAAAGATTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
* *
16121128 AA-ACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
516 AAGA-TTCACGTGAAAGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTCGC
* *
16121192 ATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATC
580 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ACTCGATCCACGGCTTGCGCATC
* * * * * * *
16121256 CCGTCTCTCTTGTCGGCATAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCATCGGTTGGCTTAG
644 CCATCTCTCTGGCCAGCATAGTGCCCGCCCACCCACCAGCCCGCTCATTTCATCGGTTGGCTTAG
* *
16121321 GCATATGGAGTTCCTTCCCAGTCTAAG
709 GCATACGGAGTTCATTCCCAGTCTAAG
16121348 ATTGGACCGG
Statistics
Matches: 669, Mismatches: 59, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
744 107 0.16
745 287 0.43
746 270 0.40
747 2 0.00
748 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (745 bp):
TCATTCCCAGTCTAAGATCGGAGCGGACCGAGGCTTGCGGCAGCACATGCTGGGCTCAGGCATGT
GCTGGTGCCGTATTTTTCTTCGCTGAGGCACCATCACCGGAGCATCCAGGAGAACCTGACAGGCA
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGCTGTGCACACATGATGTACGATGGGTGCTG
GAACTGGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGGACACTTTT
TTTCAAATGGTAACAAAATCTTGTACACTTCAAGTTTTTAACTGAATATTTTTATGCATGCCAAA
AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
TCTCAAACCGTAAAAAGATTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAGAT
TCACGTGAAAGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTCGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCACTCGATCCACGGCTTGCGCATCCCATCTC
TCTGGCCAGCATAGTGCCCGCCCACCCACCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGAAGT
Found at i:16121516 original size:26 final size:26
Alignment explanation
Indices: 16121479--16121531 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121469 GTTGACTTAG
* *
16121479 GCATACAGAGTTCCTTCCGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16121505 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16121531 G
1 G
16121532 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16122405 original size:26 final size:26
Alignment explanation
Indices: 16122369--16122421 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16122359 GTTGACTTAG
16122369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16122395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16122421 G
1 G
16122422 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16123763 original size:902 final size:902
Alignment explanation
Indices: 16120552--16124878 Score: 5834
Period size: 901 Copynumber: 4.8 Consensus size: 902
16120542 CCCACCTGCT
* * * *
16120552 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * *
16120617 TCCCAGTCTAAGATCGGATTGGACCGAGGCTTGCGGCAGCACATGCTGGGCTCAGGCTTGTGCTG
66 TCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * * * * *
16120682 GTGCCGTATTTTTCTTCGTCTAGGCACCATCACCGGAGCATCGCCAGAGTACCTGACCGGCAGCA
131 GTGGCGCATTTTT-TTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* *
16120747 TTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGAA
195 TTGGGGTTCCGGCGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16120812 CTTGGCCC-TATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
259 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16120876 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
324 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16120941 AAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTATGCATGCCAAAAAAA
389 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
*
16121006 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCGAAAAAATTTTAAAAAAT-C
454 ATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTT-CCGAAAAAATTTTAAAAAATCC
* *
16121070 TCAAACCGTAAAAAGA-TTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
518 T-GAACCGTAAAAA-ATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16121134 CACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGA
581 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
16121199 AATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
646 AATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * **
16121264 CTTGTCGGCATAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGG
711 CTGGCCGACGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* ** * * * * **
16121329 AGTTCCTTCCCAGTCTAAGATTGGACCGGACAGGGGGTTGCGACAGCATGATCGGCAGCACGTAG
776 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAG
* * * * *
16121394 A-GGGGACCCGGTCGATCCCCGGCATGCGCATCGCGTCCCTCCGGCCGGCTGAGCGCCTGCA
841 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * *
16121455 CGCTTGCTTCATGGGTTGACTTAGGCATACAGAGTTCCTTCCGAGTCTAAGCATACGAAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
16121520 TCCCAGTCTAAGATCAGACCA-GACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
66 TCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
16121584 GGTGTCGCATTTTTCTT---C---G-----T---CGGAGCATCGTCGGAGAACCTGAACGGCGGC
130 GGTGGCGCATTTTT-TTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGC
**** *
16121635 ATTGGGGTTCCAAAAATCGGGGGTGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
194 ATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16121699 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAG
258 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
16121764 CATCTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTT
323 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * **
16121829 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGTGAAAAAA
388 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
* * *
16121894 AATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCG
453 AATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC-
* * *
16121959 C-GAACCG-AAAAAAGTTTTGTAAATCGTGGAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
517 CTGAACCGTAAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
16122022 CACATTAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
581 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
16122087 AATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
646 AATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
16122152 CTGGCCGACGTAGTGTCCGCCCGCACGCCCGGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
711 CTGGCCGACGTAGTGCCCGCCCGCCCG-CCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
* * ** * * ** *
16122217 GAGTTCATTCCTAGTCTAACATTGGACCAAATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCA
775 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACA
* * * * *
16122282 GAGGGGGGCCCGGTCGATCCCCGGCTTGCGCATCCCGACCCTCTAGCCGCCTGAGCGCCCGCA
840 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
16122345 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
16122410 TCCCAGTCTAAGATCGGACTGGACCGATGGTTGCGGCAGCACATGCTCAGCTTGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * *
16122475 G-GGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGC
131 GTGG-CGCATTTTT-TTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
16122539 ATAGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTACGATGGGTGGTGGT
194 ATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
16122604 ACTTGGCCCCTATATTGGCCCCTTATCCCTCATTAAACCTTGAGAACTCCCA-CCCCTTAAAGAG
258 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16122668 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACATTTTTTT
323 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * *
16122733 CAAATGGTCAGAAAATCTTGTACACCTGGAGTTTTTAGTTGAATTTTTGTATGCATGCCAACAAA
388 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
* * *
16122798 ATTACAAGGATCACGC-CTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAATATTTTAAAAAATC
453 AATACAAGGATCAC-CTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
*
16122862 CTGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTC
517 CTGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16122927 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
582 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
16122992 ATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCAGGGCTTGCGCAACCCGTCTCTC
647 ATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
16123057 TGGCCGACGTAGTGCCCGCCCTCCCGTTC-TCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
712 TGGCCGACGTAGTGCCCGCCCGCCCG-CCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* * * * ** *
16123121 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCAACAGCACATAG
776 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAG
* * * ** * *
16123186 AGGGGGACCCAGTCGATCCCCGGCTTGTGTATCTCGCCCCTCTGGTTGGTTGAACGCCCGCA
841 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
16123248 CGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTAAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
16123313 TCCCAGTGC-AAGATCAGACAGGACCGAGGGATGCGGCAGCACATGTTGGGCTCGGGCATGTGCT
66 TCCCAGT-CTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * *
16123377 GGTGGTGCATTTTTTGCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACTGACGACA
130 GGTGGCGCATTTTTTTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * *
16123442 ATAGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGAACATTATGTGCGATGGGTGCTGGTAC
195 TTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
16123507 TTGGCCCTTACATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
260 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
16123572 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
325 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * ** *
16123637 AATGGTCACAAAATCTTGTACACTTTC-AGTTTGTAGCTGAATTTTTTTGTAAATGCCAATAAAA
390 AATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
* * * ** *
16123701 ATACTAGGATCACCTCTACGAAGTTTAGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCC
454 ATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* ** *
16123766 GAACCGCAAAATGTTTCT-AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
519 GAACCGTAAAAAATTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16123830 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCACAAA
583 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
16123895 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCT
648 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
16123960 GGCCGACGTAGTGCCTG--CTCAC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAA
713 GGCCGACGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-A
* * *
16124020 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTGTGACAGCAGGATTGGCAGCACACAGA
777 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGA
* * * *
16124085 GGGAGACCTGGTCCATCCCCGGCTTGCGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCA
842 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
16124146 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTACGCGTACGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * **
16124211 TCCCAGTCTAACATCAGACCA-GACCGAGGGTTACGGTAGCACATGCTGGGCTCGAACATGTGCT
66 TCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
16124275 GGT-GC-CATATTTTTCCTCACCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACG
130 GGTGGCGCAT-TTTTT--TCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG
* * * * *
16124338 GCATTGGGGTTCCGACAATCGGAGGGGCTAGGGGGGGTGTGCGCACATGATGTGTGATGGGTACT
192 GCATTGGGGTTCCGGCGATCGG-GGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
16124403 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAA
255 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
16124468 GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGTACACTTT
320 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** * * *
16124533 TTTCAAATGGTCGTAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATTCCAAC
385 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
* * *
16124598 AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAACCCTTTCCAAAAAAATTTTAAAAA
450 AAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCC-TTCCGAAAAAATTTTAAAAA
* *
16124662 ATCCTGAACCGT-AAAAAGTTTCAAACATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
514 ATCCTGAACCGTAAAAAATTTTGAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
16124726 CTTCACGTGAATGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
578 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
16124791 AGAAATATGAAGATGTGCCTAAACCAACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGTG
643 AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16124856 TCTCTAGTCGGCGTAGTGCCCGC
708 TCTCTGGCCGACGTAGTGCCCGC
16124879 TTGTTTCGTC
Statistics
Matches: 3013, Mismatches: 362, Indels: 99
0.87 0.10 0.03
Matches are distributed among these distances:
886 1 0.00
887 5 0.00
888 256 0.08
889 347 0.12
890 178 0.06
892 1 0.00
893 1 0.00
896 4 0.00
897 9 0.00
898 254 0.08
899 61 0.02
900 28 0.01
901 528 0.18
902 433 0.14
903 388 0.13
904 428 0.14
905 91 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGGCGCATTTTTTTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
ACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGA
ACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGG
GACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:16125427 original size:26 final size:26
Alignment explanation
Indices: 16125397--16125449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16125387 GTTGACTTAG
16125397 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16125423 GCATACGTATTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16125449 G
1 G
16125450 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16126314 original size:26 final size:26
Alignment explanation
Indices: 16126285--16126337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16126275 GTTGACTTAG
*
16126285 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16126311 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16126337 G
1 G
16126338 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16126912 original size:900 final size:884
Alignment explanation
Indices: 16125163--16127194 Score: 2910
Period size: 900 Copynumber: 2.3 Consensus size: 884
16125153 GATCACGTCT
* * * * *
16125163 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGGCCGTTCATTTCGTTT
1 ACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTG
* *
16125228 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGATCAGACCGAGGGTTGTGGCAG
65 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAG
* * * * * *
16125292 TAGGATTGTCAGCACGTAGAGGGGGACCCGATCGATCCCCAGCTTGTGCACCCCGCCCCTCTGGC
128 CAGGATTGGCAGCACGTAGAGGGGGA-CCGATCGAT-CCCGGCTTGCGCATCTCGCCCCTCTGG-
* * **
16125357 CGACTGTGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
190 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * *
16125422 AGCATACGTATTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGCGACAGCACATGCTGG
255 AGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTAG
* * * *
16125487 GCTCGGGCATGTGCTGGTGCCGAATTTTTGTTCGTCGGGGCACCATCGTCGGTGAACTTGATCGA
320 GCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGA
*
16125552 CTGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTG
385 CGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTG
*
16125617 CTGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACTACGAGAACTCACACCCCCTTAA
450 CTGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACTACAAGAACTCACACCCCCTTAA
*
16125682 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
515 AGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
16125747 TTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAA
580 TTATCAAATCATCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAA
* * *
16125812 CAAGAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAGAAATTTTACAAA
645 CAAGAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
**
16125877 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAAC
710 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAAC
* *
16125942 TTCACGTGAAGGCTTAAGAGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
775 TTCACGTGAAGGCTTAAGAGAACATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGTA
16126007 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
840 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
16126052 ACGGCTTGCGCATCCGGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
1 ACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTG
* * * *
16126117 GTTAGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGGACCGGACCAAGGATTGTGGCAGC
65 GTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC
* ** * *
16126182 AGGATCGGCAGCACGTAGAGGGGGACCGGCCGATCCTCGGCTTACGCATCTCGTCCCTCTGGTCG
129 AGGATTGGCAGCACGTAGAGGGGGACCGATCGATCC-CGGCTTGCGCATCTCGCCCCTCTGG-CG
* * *
16126247 GCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
192 GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* *
16126312 CATGCGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGACAGCACATGCTAGG
257 CATACGGAGTTCATTCCCAATCTAAGATCAGACT-GGACCGAGGGTTACGACAGCACATGCTAGG
* *
16126376 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGA
321 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGA
* *
16126441 ACCTGACCGGA-GGCATTGGGGTTCTGGCGATCGGGGGGGCGAGGGGGGTGTGTGCGCACATGAT
375 ACCTGACC-GACGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGG-GTGTGCGCACATAAT
16126505 GTGCGATGGGTGCTGGTACTTGGCCC-CTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAA
438 GTGCGATGGGTGCT-GTACTTGGCCCTC-ATATTGGCCCCCTATCCCTCATCAAA-CTACAAGAA
*
16126568 CTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCT
500 CTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
** *
16126633 GAAATGGGGACACTTTTATCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTG
565 GAAATGGGGACACTTTTATCAAATCATCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT-
* * *
16126698 T-TTTGTGCATGCCAACAA-AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
629 TCTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCC
** * **
16126761 AAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGT
694 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
* * * *
16126826 CGA-CTTGCCATGAAACTTCACGTGCATGCTTAAGGGACCATTGTATCAATTGACAAGCCATAAA
759 C-ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGAACATTGTATCAATTGACAAGCCATAAA
16126890 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
823 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
16126952 ACGGCTTGAGCATCCTATCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTC
1 ACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTC
* * * *
16127017 GTTGGTTGGCTTAGGCATATGGAGTTCATTCCAGTATAAGATCAGACCGGACCGAGGGTTGGGGC
61 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGC
*
16127082 AGCAGGATTGGCAGCACGCAGAGGGGGACTCGATCGATCCCTGGCTTGCGCATCTCGCCCCTCTG
126 AGCAGGATTGGCAGCACGTAGAGGGGGAC-CGATCGATCCC-GGCTTGCGCATCTCGCCCCTCTG
16127147 GCAGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
189 GC-GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
16127195 CGACTACCTG
Statistics
Matches: 1014, Mismatches: 99, Indels: 45
0.88 0.09 0.04
Matches are distributed among these distances:
887 3 0.00
888 185 0.18
889 132 0.13
891 1 0.00
894 1 0.00
896 1 0.00
899 47 0.05
900 278 0.27
901 182 0.18
902 4 0.00
903 59 0.06
904 121 0.12
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (884 bp):
ACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGG
TTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAG
GATTGGCAGCACGTAGAGGGGGACCGATCGATCCCGGCTTGCGCATCTCGCCCCTCTGGCGGCTG
AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTAGGCTCGG
GCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGTAC
TTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACTACAAGAACTCACACCCCCTTAAAGAGCA
TCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCA
AATCATCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAGAA
TACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACG
TGAAGGCTTAAGAGAACATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
Found at i:16127941 original size:756 final size:758
Alignment explanation
Indices: 16126453--16127950 Score: 2281
Period size: 756 Copynumber: 2.0 Consensus size: 758
16126443 CTGACCGGAG
** * *
16126453 GCATTGGGGTTCTGGCGATCGGGGGGGCGAGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGC
1 GCATTGGGGTTCCAGCGATCGGGGGGGC-ACGGGGGTGTGTGCGCACATGATGTGCGACGGGTGC
16126518 TGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
16126583 AGAGCATCTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
16126648 TTATCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
195 TTATCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
* *
16126713 CAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAA
260 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
** ** * *
16126778 TCTTGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGACTTGCCATGAAACT
325 TCTCAAACCACAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCGACTTGCCATGAAACT
* * * *
16126843 TCACGTGCATGCTTAAGGGACCATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGTAG
390 TCACGTGAAGGCTTAAAGGACCATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGAAG
16126908 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCTATCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCTATCTC
* * * * *
16126973 TCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCATATG
520 TCTGGCCGACGTAATGCCCGCCAGCCCGACCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACG
** * *
16127038 GAGTTCATTCCAGTATAAGATCAGACCGGACCGAGGGTTGGGGCAGCAGGATTGGCAGCACGCAG
585 GAGTTCATTCCAGTATAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
* * * * * *
16127103 AGGGGGACTCGATCGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCAGGCTGAGCGCCCGCACGC
650 AGGGGGACCCGACCGATCCCAGGCTTGCGCACCTCGCCCCTCTGGCAGGCTGAGCACCCGCACAC
* ** *
16127168 TCGTTTTGTGGGTTGACTTAGGCATACCGACTACCTGACCGACA
715 TCATTTCATGGGTTGACTCAGGCATACCGACTACCTGACCGACA
16127212 GCATTGGGGTTCCAGCGATC-GGGGGGC-CGGGGG-GTGTGCGCACATGATGTGCGACGGGTGCT
1 GCATTGGGGTTCCAGCGATCGGGGGGGCACGGGGGTGTGTGCGCACATGATGTGCGACGGGTGCT
* *
16127274 TGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
16127339 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTT
131 GAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
* ** * * *
16127404 TTTCAAATGGTCACAAAATGTTGTATAGTTTGAGTTTTTAGCTTAA-TGTTTTTGTGCATGCCAA
196 TATCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTG-TTTTGTGCATGCCAA
* *
16127468 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAA
260 C-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * ** * *
16127533 ATGTCAAACCATAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
324 ATCTCAAACCACAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCGACTTGCCATGAAAC
* * *
16127598 TTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAA
389 TTCACGTGAAGGCTTAAAGGACCATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGAA
* *
16127663 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CTCGTC
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCT-ATC
* *
16127727 TCTCTGGCCGACGTAATGCCCGCCCGCCCGACCGCCCACTCATTTTGTCGGTTGGCTTAGGCATA
518 TCTCTGGCCGACGTAATGCCCGCCAGCCCGACCGCCCACTCATTTCGTCGGTTGGCTTAGGCATA
* * *
16127792 CGGAGTTCATTCCCAG-CTAAGATCGGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACG
583 CGGAGTTCATT-CCAGTATAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
*
16127856 CAGAGGGGGACCCGACCGATCCCAGGCTTGCGCAGCCT-GCCCCTCTGGCCGGCTGAGCACCCGC
647 CAGAGGGGGACCCGACCGATCCCAGGCTTGCGCA-CCTCGCCCCTCTGGCAGGCTGAGCACCCGC
**
16127920 ACACTCATTTCATTTGTTGACTCAGGCATAC
711 ACACTCATTTCATGGGTTGACTCAGGCATAC
16127951 GGAGTTCATT
Statistics
Matches: 666, Mismatches: 68, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
754 2 0.00
755 210 0.32
756 423 0.64
757 6 0.01
758 7 0.01
759 18 0.03
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (758 bp):
GCATTGGGGTTCCAGCGATCGGGGGGGCACGGGGGTGTGTGCGCACATGATGTGCGACGGGTGCT
GGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
GAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
TATCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CTCAAACCACAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCGACTTGCCATGAAACTT
CACGTGAAGGCTTAAAGGACCATTGTATCAATTGACAAGCCATAAAAATGGCATTGGCACGAAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCTATCTCT
CTGGCCGACGTAATGCCCGCCAGCCCGACCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCAGTATAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGA
GGGGGACCCGACCGATCCCAGGCTTGCGCACCTCGCCCCTCTGGCAGGCTGAGCACCCGCACACT
CATTTCATGGGTTGACTCAGGCATACCGACTACCTGACCGACA
Found at i:16128867 original size:26 final size:26
Alignment explanation
Indices: 16128827--16128879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16128817 GTTGACTTAG
*
16128827 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
* *
16128853 GCATACGGAGGTCATTCCTAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
16128879 G
1 G
16128880 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:16129778 original size:26 final size:26
Alignment explanation
Indices: 16129726--16129778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16129716 GCTGACTTAG
* *
16129726 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATATAA
*
16129752 GCATACGGAGTTCATTCCCAATATAA
1 GCATACAGAGTTCATTCCCAATATAA
16129778 G
1 G
16129779 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:16130331 original size:896 final size:893
Alignment explanation
Indices: 16127945--16138447 Score: 10462
Period size: 893 Copynumber: 11.9 Consensus size: 893
16127935 GTTGACTCAG
* * *
16127945 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16128010 CTCAGGCATGTGCTGGTGCCGCATTTCTCTTAGTCGGGGCACCATCATCGGAGCAACGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16128075 ACCTGACCAACGGCGTTGGGGTTCCGACGATCGGGGGGCCCGATTGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCG--GGGGGTGTGCGCACATGATGT
* * *
16128140 GCGATGGGTGTTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
16128205 CTCCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16128270 TGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** **
16128335 GTGCATGCCAACAAAAATACAA-GATCACGTCTAAAAAGTTTGGGGCAAAACTCCTTCTGAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCAAAAAA
** * *
16128399 ATTTCAAAAAATCGTGAACCGTAAAATGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCGTCTT
453 ATTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
16128464 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16128529 TTGGCACACAGAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
16128594 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG--CG-CCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
16128659 TTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAACCGTTGGTTGCGACAGCA
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-A--G--GGTTGCGGCAGCA
* * * * * * *
16128724 GGATCGACAGCATGCAGAGGGAGACTCGGCCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCTG
765 GGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
16128789 GCTGAGCGCTCGCACGCTCATTTCGAGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16128853 GCATACGGAGGTCATTCCTAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT-GG
* *
16128918 G-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
16128982 AACCTGACCGACCGCATTGGGGTTTCGACGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGT
*
16129047 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
16129112 CACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAATAG-CAGTTGAAGTGTCTGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAA
16129176 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16129241 GGTGCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGAA
387 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTC-CAA
* * * ** *
16129305 AAAATTTTAAAAAACCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
449 AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16129370 CTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16129435 GCCTTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTACCGATCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ***
16129500 GCGCATCCTGTCCCTCTGGCTAACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CG-CCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
16129565 TAAGCATACGGAGTTCATT-CCAATCTAAGATCGAACCAGACCGAGGGTTGTGGGAGTAGGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * **
16129629 GCAGCACAG-AGAGGGGGACTCGGTCGATCCCCGGCCTGTGCATCCTGCCCCTCTGGCCGATTGA
771 GCAGCA-TGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
16129693 GCGCTCGCACCCTCGTTTCGAGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16129752 GCATACGGAGTTCATTCCCAATATAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16129817 CTCGAGCATGTGCTGGTGCCGCCTTCTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * *
16129882 ACCTAACTGGCGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * **
16129947 ATGGGTGCTAGTACTTGCCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
16130011 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16130076 GGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
16130141 CATGCCAACAAAAATACAAGGATCAAGTCTACCAATTTTGGGGTCAAAACACCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAAT
* * *
16130206 TGTAAAAAATCACCGATACCTTAAAAAGTATTCAAAAGATCGTGAAAAATAGAAAA-AAGTTGTC
455 T-TAAAAAATC-CCGA-ACCGTAAAAAGT-TTCAAAA-ATCGTGAAAAATAGAAAACGAGTCGTC
16130270 TTG-CATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCAT-AAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16130332 -A-TGGCATGCAGAAATAT-AA-A--TG-CTAAACCC-CTTA-CACCCTATC-AT-CA--GCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
16130384 CACAT----TC-GTC--GAC-G-GT-GT-----------AC-C-CGTTTCGTCGGTTGGCTTAGG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * * * *
16130426 CATACAAAGTTCATTCCCAATCTAAGATCGGATCAGACTGAAGGTTGGGGCAGCAGGATCGGTAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * *
16130491 CATGCAGAGGGGGACCCGGTCGAACTTCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCC
775 CATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
16130556 CGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16130610 GCATACGGAGTTGATTCCC-GTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16130674 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCAAT-TGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GTCGGAG
* * * * *
16130738 AAGCTGACCGACGGCATTGGGGTTCTGGA-GATTGGGGGGCCAGGGGGTGTGCGGACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
16130802 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
16130867 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16130932 GGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTT
* * *
16130997 -TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAAGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCTTCCAAAAA
* * * *
16131061 AATTTCAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCT
452 AATTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16131126 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16131191 ATTGGCATGCAGAAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGACTTGT
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16131255 GCATCCCGTCTCTCTGGCCGACGTGGTGCCCGC-CCGTCCGCTCGTTTCGTTGGTTGGCCTAGGC
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
16131319 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAAGATCGGCAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
16131384 ATGTAG-GGGGTTA-CCGGATCGGTACCCGACTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCAC
776 ATGCAGAGGGG-GACCCGG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
16131447 CTGCACGCTCAG-TTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16131502 GCATACAGAGTTCATTCCTAGTCTAAGAACGGACCGGACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16131567 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTC-ACTGGGGCACCATCGCCGCAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
** *
16131631 AACCTGACTCG-CGATATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAAGATG
130 AACCTGAC-CGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATG
* *
16131695 TGCGATGGGTGC----A---GG----TA-CTTGGCCCCCTATCCTTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * * * *
16131748 ACACCCCCTTAAAGAGCATTTGAGATTTTATA-ATTTGTTGCCAGTAGCCACTAAAGTGTATGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16131812 ATGGGGGACAC--TTTT----T--T--C-AAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTT
322 AT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
16131866 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCAAA
* * * *
16131931 AAAATTT-CAAAATCTCGAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16131995 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16132060 CATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGACTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
16132125 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * * * *
16132189 CATACAAAGTTCATTCCCAATCTAAGATCGGATCAGACTGAAGGTTGGGGCAGCAGGATCGGTAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * * *
16132254 CATGCAGAGGGGGACCCGGTCGAACTTCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTAAGCGCC
775 CATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
16132319 CGCATGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16132373 GCATACGGAGTTGATTCCC-GTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16132437 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCAAT-TGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GTCGGAG
* * * *
16132501 AAGCTGACCGACGGCATTGGGGTTCTGGA-GATTGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
16132565 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
16132630 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTACCAGTAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16132695 GGGGGCACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16132760 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCTTCCAAAAAA
* * * *
16132825 ATTTCAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCTT
453 ATTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16132890 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16132955 TTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGACTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
16133020 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * * * * **
16133084 TACAAAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGTGGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * * * *
16133149 CGCAGAGGGGGACCTTGTCGATCCTCGGCTTGCGCATCCCGCCCCCCTGGCCGGTTGAACGCCCG
777 TGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
16133214 CACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16133266 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * **
16133331 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16133396 ACCTAACCGGCGGCATTGGGGTTCCAGA-GATCGAGGAGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * **
16133460 GTGATGGGTGCTGCTACATGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* **
16133525 CACCCCCTTAAAGAGTATTTGAGATTTTACAGCATTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16133590 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16133654 GAGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCTTCC-AAAA
* *
16133719 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATC
451 AAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16133784 TTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16133849 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * * *
16133914 CACATCCCGTCTCTATGGTTGGCGTAGTGCCCTCCCGCCAGCCTGCCCACTCGTTTTGTTGGTTA
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG-C-GCC-GCCCGCTCGTTTCGTCGGTTG
* * * *
16133979 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
16134044 TCGGCAGCATGCAAAGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGCCTCTTTGGCCGACT
768 TCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
16134109 GAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAC
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---C-C
16134174 ACGGAGTTCATTCCCACTATA
886 -C--AG-----T----CTA-A
* * * *
16134195 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGCAGCACATGCTGG
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* *** *
16134260 GCTTGGGCATGTGCTGGTGCTATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
16134325 AACCTGACCGGCGTCATTGGGGTTTCGACGATTGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCC--GGGGGGTGTGCGCACATGATG
* * * *
16134390 TGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
16134455 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA-TAAAGTGGTCTG-
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGA
* *
16134518 AATGGGGACAC-TTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
16134582 TTGTGCATGCCATACAAAAATACAAGGATTCATGTCTACCAAGTTTGGGGCAAAACTCCTTCCAA
386 TTGTGCATGCCA-ACAAAAATACAAGGA-TCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCAA
* * * * * *
16134647 AAAATTTTAAAAGATCTCGAACCG-GAAAAGTTT-AGAAAATTTGTAAAAAATAGAAAACGAGTC
449 AAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAA-TCGTGAAAAATAGAAAACGAGTC
*
16134710 GTCTTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCA-TG-A-GAA-TGACCAAGCCATAGA
512 GTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATA-A
* * * * ** *
16134770 TAAT-TCATTGGCACGCAGAAATATGATGATGTGCCTAAACCCACCGATAACCCTATCG-CCCAA
574 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-A
* * * *
16134833 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTCGTGCCTGC-CCGCCCGCTCGTTTCATCGGTTG
638 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTG
** * * *
16134897 GCTTAGTTATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACCGACGGTTGTGGCAGCAGG
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGG
* * *** * * * *
16134961 ATCGGCAGCACGTAGAGGGGGACCCTACCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGTCGAC
767 ATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16135026 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCCAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
16135088 GCATACAGAGTTC-TCTCGCAGTCTAAGATCTGACCCA-ACCGAGGGTTGCGATAGCACAAGCTG
1 GCATACGGAGTTCAT-TCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * * *
16135151 GGCTCGAGCATGTGCTGGGGCTGCATTTTTCTTCGTCGGGGCACCAGCGCCGGAGCATCGCCAGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
16135216 GAACCTGACTGACGACTTTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-TGTGCGCACATGATG
* *
16135281 TGCGATGGGTGCTGGCACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
16135346 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16135411 GTGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16135476 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCC-AAA
* * * *
16135541 AGATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTC
450 AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
16135605 TTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16135670 CATTGGCACGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
16135735 CGCATCTCATCTCTCTGGCCGGCGTAGTACCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
16135799 CATACGGAGTTTATTACCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCTGGATCGGCGG
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * ** * * * *
16135864 CACGCAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCCCG-CCCT-TCGACAGCTGAGCTCG
775 CATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG--CG
** ** * * *
16135927 CCCGCAACGCTTATTTCGTAAGTAGACTTA-G-ATACGGACATCTCATTCCCA-TGCCAA
838 CCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GT-TCATTCCCAGT-CTAA
* * *** * ** * * * *
16135984 GC-TAC--AGTTCATT-TC-TTCTAAGATCGGATTGGACCAATGTCTTAACGGGAGC-CATGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTT-GCGGCAGCACATGCTG
** * * * *
16136043 GTTTCGAGCATGTGCT--T-CCGCATTTTTCTTCGTCAGAGCATTTGAACAACCATTGGTCGGCG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-G-G-----G-GC-ACCA-TCGTCGGAG
** *** * * * * * * ***
16136105 -A---TCGGAGAAATTTTGCGCCAGCA--GGAG-T--G-CAAT---GGTG-CGTGATCT-TGC-C
119 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * *** *** ** * ***** * ** *
16136154 -CTTTAT-TGCGCATATCT-CATCAAAC-T--CGATTAATCATTTGACTTAAAGAAGCTTTAATT
184 ACATGATGTGCG-ATGGGTGC-TGGTACTTGGCCCTT-AT-A-TTGGC--CCCCTATCCCTCA-T
* * ** * **** * ** * * *** * * * * *
16136213 TACAGGTT-TG--CTGC-CTGTAGCATTAAA-AGTGTCTGAAATGGGGACA-CTTT-TTTCAAAT
241 CAAACCTTGAGAACT-CAC-ACCCCCTTAAAGAGCATTTGAGAT-TTTACAGGTTTGCTGCCAGT
* * ** * * ** * *** *
16136271 GGTCACAAAATCTTGTACACTTGAAGTTTTTAGCTGA-ATTTTTTTGTGCAT-GCCAACAAAAAT
303 AGCCATTAAA--GTGT---C-TGAA----AT-GGGGACACTTTTTT-CAAATGGTC-AC-AAAAT
** * * *** * *** * * * *
16136334 ACAAGGATCACGTCGGCCATGTTTGGGGC-CAAAACTCTT-T-C---CGAA-AAAATTTTA-AAA
354 -CTTGTA-CACTTC-G--A-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA--ATACAAG
* * * ** * * ** * * ** * * ***
16136391 AATCCCGAACCGCAAAAATTT-TTG-AAAA-T-CAT---GAAAAATAGAAAACGAGTCGTCTTGC
411 GATCACG-TCTAC-CAAGTTTGGGGCAAAACTCCTTCCAAAAAAATTTAAAA--AATC-CCGAAC
* * * *** * * * * *
16136449 CAT-GAAA-CTTC----A-CGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AA-TTTAC---
471 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTG
* * ** * * * ** **
16136495 AAGCCATAA---A--A----ATGGCTTTGGC-AGGCA-AAAATATGAAG-ATGTGCCTAAACCCA
535 AAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAA-ATG--GCAT-TGGC-ACGCAGA
** ** *** * * * * * * **
16136548 CCTACCACCCTAT--C--GATCCACGGCTTGCGCATCCTGTCTCTCTGGC-CGGCGTAGTGC-CA
594 AATATGAAGATGTGCCTAAACCCAC--C-TAC-CACCCTATCGATC---CACGGC-T--TGCGCA
* * * * * * ** ** ** * ** * ** *
16136607 GCCC-ACTCGTTTTGTC-G-GTTG-GCATAGACATACG-GAGTTAATTCCAGTC--TAAGATT-G
649 TCCCGTCTC-TCTGGCCGGCGTAGTGC-CCG-C-GCCGCCCGCTCGTTTC-GTCGGTTGGCTTAG
* * *** * * *
16136664 G---AC-CAG-AC-TT-AGGGT-TACA-AT-AG-CAAGATCGA---------CAGC---A----C
709 GCATACGGAGTTCATTCCCAGTCTA-AGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
16136702 -G--T--AGAGCGGGACCCGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCA
773 AGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * *
16136762 CCCGCACGCTCGTTTTATGGGTTGACTTAGGCATAAGGAGTTCATTCTCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16136818 GCGTACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16136883 CTCGGGCATGTGCTGGTACCGCACTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * *
16136948 ACCAAACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* **
16137013 GATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
16137077 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
16137142 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
16137207 GCATGCCAACAAAAATACAAGGATCGCATCTACAAAGTTTGGGGTCAAAAATGCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTC-CAAAAAA
* * * * *
16137272 TTTTAAAAAATTCCAAACCGTACAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 ATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
16137337 CCATGAAACTTCACTTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATGAAAATGGAAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16137402 TGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16137467 ATCCCGTCTCTCTGGCCGACGTAGT----GC-TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * * * *
16137527 ACGGAGTTCATTGCTAGGCTAAGATTGAACCAGATCGAGGGTTACGGAAGAAGGATCGACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAT
* ** * * *
16137592 GCAGAGGGGGA-CCTGTCCGATCCCCAACTTGCACATCCCGCCCCTCTGGTCGGTTGAGCGCCCG
778 GCAGAGGGGGACCCGGT-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
16137656 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16137708 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16137773 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGGATGGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
16137838 ACCTGATCGGCGGCATTGGGGTTCTGGCGATCGAAGGGGCCGGGGGGGTGTGCCCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
16137903 AGATGGGTGCTGGTACTTGGCCCTTCTACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
16137968 A-CCCC--------C----------TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16138014 GGGGACACTTTATTCAAATGGTCACAAAATCCTT-TACACTTCGAGTTTTTA-CGTGAATTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGC-TGAATTTTTT
* ** * * *
16138077 TATGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTT-GGCCAAAGCTCCTTTCGAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCC-TTCCAAAA
* * *
16138141 AATTTTAAAAAATCCCGAACCGTAAAAAGATTT-GAAAATCATGAAAAAATAGAAAACGAGTCGT
451 AAATTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGT
*
16138205 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16138270 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
16138335 GCGCATCCCGTCTCTCTGGCCGATGTAGT----GC-CCGCCCG-TACGTTTCGTCGGTTGGCTTA
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCT-CGTTTCGTCGGTTGGCTTA
* * * *
16138394 GGTATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCA
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
16138448 CCAGCACATG
Statistics
Matches: 7955, Mismatches: 1221, Indels: 874
0.79 0.12 0.09
Matches are distributed among these distances:
831 12 0.00
832 11 0.00
833 2 0.00
834 33 0.00
835 68 0.01
836 18 0.00
837 39 0.00
838 39 0.00
839 31 0.00
840 6 0.00
841 22 0.00
842 5 0.00
843 7 0.00
844 11 0.00
845 7 0.00
846 9 0.00
847 20 0.00
848 26 0.00
849 21 0.00
850 8 0.00
851 5 0.00
852 3 0.00
853 3 0.00
854 22 0.00
855 17 0.00
856 49 0.01
857 246 0.03
858 392 0.05
859 22 0.00
860 29 0.00
861 23 0.00
862 15 0.00
863 19 0.00
864 28 0.00
865 23 0.00
866 27 0.00
867 23 0.00
868 58 0.01
869 34 0.00
870 255 0.03
871 320 0.04
872 350 0.04
873 140 0.02
874 9 0.00
875 8 0.00
876 4 0.00
877 9 0.00
878 8 0.00
879 22 0.00
880 102 0.01
881 51 0.01
882 40 0.01
883 86 0.01
884 14 0.00
885 13 0.00
886 10 0.00
887 13 0.00
888 8 0.00
889 41 0.01
890 268 0.03
891 361 0.05
892 466 0.06
893 658 0.08
894 178 0.02
895 342 0.04
896 655 0.08
897 99 0.01
898 53 0.01
899 279 0.04
900 22 0.00
901 2 0.00
903 5 0.00
904 187 0.02
905 47 0.01
906 9 0.00
907 217 0.03
908 165 0.02
909 215 0.03
910 11 0.00
911 2 0.00
912 3 0.00
914 2 0.00
916 1 0.00
917 3 0.00
918 164 0.02
919 4 0.00
921 1 0.00
922 3 0.00
924 1 0.00
925 4 0.00
926 90 0.01
927 6 0.00
928 17 0.00
929 92 0.01
930 211 0.03
931 160 0.02
932 16 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCAAAAAAATT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCA
GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16130613 original size:26 final size:25
Alignment explanation
Indices: 16130584--16130635 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16130574 ATTGACTTAG
16130584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
*
16130610 GCATACGGAGTTGATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
16130635 G
1 G
16130636 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:16131506 original size:26 final size:26
Alignment explanation
Indices: 16131476--16131528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16131466 GTTTACTTAG
*
16131476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16131502 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16131528 G
1 G
16131529 AACGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16132376 original size:26 final size:25
Alignment explanation
Indices: 16132347--16132398 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16132337 ATTGACTTAG
16132347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
*
16132373 GCATACGGAGTTGATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
16132398 G
1 G
16132399 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:16133276 original size:26 final size:26
Alignment explanation
Indices: 16133240--16133292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16133230 GTTGACTTAG
16133240 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
16133266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16133292 G
1 G
16133293 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16134188 original size:26 final size:26
Alignment explanation
Indices: 16134152--16134222 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
16134142 AGGCATACGA
16134152 AGTTCATTCCCAGTCTAAGCACACGG
1 AGTTCATTCCCAGTCTAAGCACACGG
* * * *
16134178 AGTTCATTCCCACTATAGGCATACGG
1 AGTTCATTCCCAGTCTAAGCACACGG
16134204 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
16134223 ATTGGATCGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCACACGG
Found at i:16137718 original size:26 final size:26
Alignment explanation
Indices: 16137682--16137734 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16137672 GTTGACTTAG
*
16137682 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16137708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16137734 G
1 G
16137735 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16140092 original size:26 final size:26
Alignment explanation
Indices: 16140056--16140108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16140046 GTTGACTTAG
16140056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16140082 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16140108 G
1 G
16140109 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16140915 original size:880 final size:880
Alignment explanation
Indices: 16139202--16141068 Score: 3006
Period size: 880 Copynumber: 2.1 Consensus size: 880
16139192 GTTGACTTAG
16139202 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16139267 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCTGATCGGCGGCATTGGGGTTCC
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCTGACCGGCGGCATTGGGGTTCC
*
16139332 GGAGATCGGGGGGGCCGGGGGGCATGTGTGCACTTGTTGTGCGATGGGTGCTGGTACTTGGCCCT
131 GGAGATCGGGGGGGCCGGGGGGCATGTGTGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCT
* *
16139397 TATATCGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACCCTCCCTTAAAGAGCATTTGAGCT
196 TATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCTCCCTTAAAGAGCATTTGAGCT
** *
16139462 TTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
261 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
** *
16139527 CAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGC
326 CAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGA
*** * *
16139592 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAATCTCGAACCGTAA
391 TCACGTCTACCAAGTTTGGAAACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
* * * *
16139657 AAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTTCCGTGAAACTTCACGTGAAGGCT
456 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
16139722 TAAGGGACCATTGTATGAATTTACAAGAAATTAAAATGGCATTGGCACCTAGAAATATGAAGATG
521 TAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCAACAAGAAATATGAAGATG
* * *
16139787 TGCCTAAACCCACCGACCAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTA
586 TACCTAAACCCACCGACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTA
* * * *
16139852 GTACCCGCCCGTCGACCCGCCCGTTCATTTCATCGGTTTGCTTAGGCATGCGGAGTTCATTCCCA
651 GTACCCACCCGTCGACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *** *
16139917 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCATGTAGAGGGGGACCCGG
716 GTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGA
* * * * *
16139982 TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAACAGAGCGCCTGCACGCTCGTTTCGTGGG
781 CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACACAGCGCCTGCACGCTCATTTCGTGGG
16140047 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
16140082 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16140147 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCTGACCGGCGGCATTGGGGTTCC
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCTGACCGGCGGCATTGGGGTTCC
16140212 GGAGATC-GGGGGGCCGGGGGGGCATGTGTGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCC
131 GGAGATCGGGGGGGCC-GGGGGGCATGTGTGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCC
16140276 TTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCTCCCTTAAAGAGCATTTGAGC
195 TTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCTCCCTTAAAGAGCATTTGAGC
16140341 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
16140406 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAG
325 ACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATAAAAG
* *
16140471 GATCACGTCTACCAAGTTTGGAAATAAAACTCCTTCCGAAAAAA-TTTAAAAAATCTTGAACCGC
389 GATCACGTCTACCAAGTTTGGAAACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC
*
16140535 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGG
454 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* ** *
16140600 CTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAAGAAGAAATATGAAGA
519 CTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCAACAAGAAATATGAAGA
* * *
16140665 TGTACCTAAACCCACCTACCACCCTATCGATCTACGGCTTACGCATCCCGTCTCTCTGGCCGACG
584 TGTACCTAAACCCACCGACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACG
* * ** *
16140730 TAGTGCCCACCTGTCCG-CCCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
649 TAGTACCCACCCGT-CGACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
16140794 CCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACC
713 CCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACC
* ** *
16140859 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTCAGCGCAC-GCACGCTCATTTCG
778 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACACAGCGC-CTGCACGCTCATTTCG
*
16140923 TGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
842 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16140962 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16141027 CTCGGGCATGTGCTGGTG-CTGTATTTTTCTTCGTTGGGGCAC
66 CTCGGGCATGTGCTGGTGTC-GTATTTTTCTTCGTCGGGGCAC
16141069 TATCGTCAGA
Statistics
Matches: 909, Mismatches: 73, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
879 9 0.01
880 845 0.93
881 55 0.06
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCTGACCGGCGGCATTGGGGTTCC
GGAGATCGGGGGGGCCGGGGGGCATGTGTGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCT
TATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCTCCCTTAAAGAGCATTTGAGCT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGA
TCACGTCTACCAAGTTTGGAAACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCAACAAGAAATATGAAGATG
TACCTAAACCCACCGACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTA
GTACCCACCCGTCGACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACACAGCGCCTGCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16140972 original size:26 final size:26
Alignment explanation
Indices: 16140936--16140988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16140926 GTTGACTTAG
* *
16140936 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16140962 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16140988 G
1 G
16140989 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16141685 original size:26 final size:26
Alignment explanation
Indices: 16141656--16141709 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16141646 TGGGTTCACT
16141656 TAGGCATACGGAGTTCACTCCCAATC
1 TAGGCATACGGAGTTCACTCCCAATC
* *
16141682 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCACTCCCAATC
16141708 TA
1 TA
16141710 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCACTCCCAATC
Found at i:16142576 original size:26 final size:26
Alignment explanation
Indices: 16142540--16142592 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16142530 GTTGTCTTAG
16142540 GCATACAAAGTTAATTCCCAATCTAA
1 GCATACAAAGTTAATTCCCAATCTAA
* * *
16142566 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTAATTCCCAATCTAA
16142592 G
1 G
16142593 ATCAGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTAATTCCCAATCTAA
Found at i:16143462 original size:26 final size:26
Alignment explanation
Indices: 16143425--16143477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16143415 GTTGACTTAG
*
16143425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16143451 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16143477 G
1 G
16143478 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16143979 original size:897 final size:893
Alignment explanation
Indices: 16141139--16145694 Score: 5517
Period size: 881 Copynumber: 5.1 Consensus size: 893
16141129 GGTCGGGGGA
* * *
16141139 GTCACAAAATCCTGTACACTTCAAGTTTTTATG-TGAATTTTTTTATGCATGCCAACAAAAATAC
1 GTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATAC
*** * * **
16141203 AAGGATCACGTCTAAGGAGTTT--GGCCAAAACTCTTTCCGAAAAAATTTTTAAAAATCTTGAAC
65 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
16141266 CGTAAAAAGATTTGAAAATCGTGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
130 CGTAAAAAGTTTTGAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
16141331 AAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATTAAAATGGCATGGGCATGCAGAAATATG
194 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAAAATATG
* *
16141396 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTTTCTGGCC
257 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * * *
16141461 GGCATAGT-----GCCAGCCTGCTTGTTTCGTCAGTTTGCTTACGCATACGAAATTCATTCCCAG
322 GGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCTAG
* * * *
16141521 TCTAAGATCGGACCGGATCGAGGGTTACGGCAACAGGATCGACAGCACGCA-ACGGGGGACCCGA
387 TCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGA-GGGGGACCCGA
* * * * * * * * * *
16141585 TCGATCCTCGGCTTACGCTTCTTGCCCTTCTGGCCGGCTAAACGCCCACATGCTCGTTTCATGGG
451 TCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
16141650 TTCACTTAGGCATACGGAGTTCACTCCCAATCTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
516 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * ** * * *
16141715 GGACCATACCGAGGGTTGTGACAGCACATGCTAGGCTCAAGCATGTGCCGGTGTCGTATTTTTCT
581 GGACCAGACCGAGGGTT-CGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * *
16141780 TCACCGGGGCACCAT--------CA---TCGGAGAACCTGACCGACGGTATTGAGGTTCCGACGA
645 TCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGA
* * * * * *
16141834 -TGGGGGGGCCAGGGGTGGTTTACGCACAAGATGTGTGATGAGG-GCTGGTACTTGGCCCTTATA
710 TTGGAGGGGCC-GGGGGGGTGTGCGCACACGATGTGCGATG-GGTGCTGGTACTTGGCCCTTATA
16141897 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
773 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* *
16141962 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
837 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
16142019 GTCACAAAATATTGTACACTTTGAGTTTCTT-GCTGAATTGTTTTT-TGCATGCCAAAAAAAATA
1 GTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATA
* * *
16142082 CAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGAAATTTTAAAAAATCCTGAA
64 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * * *
16142147 CCGCAAAAAGTTTTAAAAACCGTGAAAAATACAAAACGAGTCATCTTGCCATGAAACTTCACGTG
129 CCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
16142212 GAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATG
194 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAAAATATG
* * * * *
16142277 ATGATGTGCCTAAACCCACCTACTACTCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCC
257 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
16142342 GACGTAGT-----GCCAGCCCGCTCGTTTCGTCAGTTGGCTTTGGCATACGGAATTCATTCAC-A
322 GGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTC-CTA
** * * * *
16142401 GTCTAAGATCAAATCGGACCGAGGGTTATGGTAGCAGTATCGACAGCACGCAGCA-GGAGACCCA
386 GTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAG-AGGGGGACCCG
* * * * * * *
16142465 ACCAATCCCCGGCTCACGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCACACGCTCGTTTCATGG
450 ATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGG
* ** * *
16142530 GTTGTCTTAGGCATACAAAGTTAATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
515 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * *
16142595 CAGG-CCAGATCGAGGGTTACGACAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCGTATTTTT
580 C-GGACCAGACCGAGGGTT-CGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * ** *
16142659 CTTCGTCGGGGCACCATCACTAGAGCATCGTCGGAGAACCTGACTGACGGCATTGAGGATCCAAA
643 CTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGAC
** *
16142724 GATCAGA-GGGCCGGGGGGGTGTGCG--CAC-A--T--GA----TG-TGGTACTTGGCCTTTATA
708 GATTGGAGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
16142776 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
773 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
*
16142841 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATG
837 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
16142898 GTCGCAAAATCTTCTACACTTCGGGTTTTTACCTGAATTTTTTTGTGCATGCCAA-AAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
16142962 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAGAAATTTTAAAAAATCCCGAAC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCCCGAAC
*
16143026 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
130 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
16143091 AGGCTTAAGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
195 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-A-AAATATGA
* * *
16143155 AGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGCCG
258 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
16143220 GCGTAGTGCCCGGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAATTCATTCTT
323 GCGTAGTG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCT
* * * *
16143285 AGTCTAAGATTGGACCAGACCGAGGGCTATGGCAGCAGGATC-AGCAGCATC-CAGAGGGGGACC
385 AGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGA-CAGCA-CGCAGAGGGGGACC
* * * * * *
16143348 CGATCGATCCCCGGCTTGCTCATCCCGCCCCTTTGGCCGGTTGAGTGCCTGCACGCTCGTTTCGT
448 CGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGT
16143413 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
513 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * *
16143478 ATCGGACCAGACCGAAGGTTAC-AGCAGCACATGCTAGGCTTGGGCATGTGCAGGTGCCGCATTT
578 ATCGGACCAGACCGAGGGTT-CGA-CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * *
16143542 ATCTTCGTTGAGGCACCATCGCCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGCTCTG
641 TTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTG
16143607 ACGATTGGAGGGGCC-GGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
706 ACGATTGGAGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
16143671 TATTGGCCTCATATCCCTCATCAAACCTTGAGAACTCACAGCCCCATAAAGAGCATTTGAGATTT
771 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
*
16143736 TACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAAT-GGGACACTTTTTTCAAATG
835 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
16143794 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
16143859 AGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
16143924 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAA
131 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * **
16143989 GCCTTAAGCGACCATTGTATGAATTTACAAGACATAAAAATACCATTGGCACGCAAAAATATGAA
196 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAAAATATGAA
* *
16144054 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGG
259 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
16144119 AGTAGTGCCCACCCACCTTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
324 CGTAGTG-----CC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATT
* * * * **
16144184 CGTAGTCTAAGATTGGACCGGACTGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGAC
382 CCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGAC
* * * * *
16144249 CCGATCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCTGCTTG-GCACCCGCACGCTCGTTTC
447 CCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCC-GGTTGAGCGCCCGCACGCTCGTTTC
* * *
16144313 GTTGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C--
511 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * *
16144361 ---T-GGACC--A---AGGGTTGCGCCAGCACGTGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
576 AGATCGGACCAGACCGAGGGTT-CGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** *
16144417 TTTCTTCGTCGGGGCACCATCACTAGAGCATCATCGGAGAACCTGACCGGTGACATTGGGGTTCT
640 TTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCT
* * * ** *
16144482 GGCGATCGG-GGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
705 GACGATTGGAGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
16144546 ATATT-ACCCCCTATCCCTCATCAAACCCCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATT
770 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATT
*
16144610 TTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
834 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
16144670 GTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAAATTTTTAGTGCATGCCAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * * *
16144735 AGGATCACATTTACCAAGTTTGGGGCCAAAACTACTGCTG-AAAAATTTTACAAAATCCCGAAGC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* ** * * * *
16144799 GCAAAAAGTTTCAAAAATAATGAAAAATAGAGAACGAGCCGTCTTGCCATGGAACTTCACGTGAA
131 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
16144864 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCCTTGGCATGCAAAAATATGAA
196 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAAAATATGAA
* * * * * *
16144929 GATGTGCCTAAACCTACCGACCACCCTATCGATACACGGCTTGCACATCCCATCTCTCTAGCCGG
259 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
16144994 CGCAGTGCCAGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
324 CGTAGTG-C--CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCTA
** * * * * * * *
16145059 GTCTAAGATCAAACCGAACCGAGGCTTACGATAGCAGGATCGATAGCACACAGAGGGGGACTCGA
386 GTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
* * * *
16145124 CCGATCCCCGGCTT-CTGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCACGTTCGTTTCGTGG
451 TCGATCCCCGGCTTAC-GCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
16145188 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
515 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * * *
16145253 CGAATCAGACTGAGGGTTGTGACAGCACATGCT-GAGCTCAGGCACGTGCTGGTGCCACATTTTT
580 CGGACCAGACCGAGGGTT-CGACAGCACATGCTAG-GCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * * * ** *
16145317 CTTCGTCGAGGCACCATCGCCGGAGCATTGCCGGGGAACATGACCGGTGGAATTGGGGTT-TCGA
643 CTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCT-GA
* * * *
16145381 CGA-TCGAGGGGGCCGGGGGGGGTGTGCGTACA-TATTGTGCGATGCGTGCTGGTACTTGGCCCT
707 CGATTGGA-GGGGCC-GGGGGGGTGTGCGCACACGA-TGTGCGATGGGTGCTGGTACTTGGCCCT
*
16145444 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCGTTAAAGAGCATTTGAGAT
769 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGAT
*
16145509 TTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
833 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * *
16145570 GTCACAAAATCTTGTACACTTCCAATTTTTAGCTGAGTTTTTTTGTGCACGCCAACCAAAATAGA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
16145635 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
16145695 ACCCCTCTGG
Statistics
Matches: 3191, Mismatches: 376, Indels: 197
0.85 0.10 0.05
Matches are distributed among these distances:
870 5 0.00
871 186 0.06
872 4 0.00
873 2 0.00
874 2 0.00
875 294 0.09
876 266 0.08
877 108 0.03
878 148 0.05
879 178 0.06
880 67 0.02
881 446 0.14
882 60 0.02
883 1 0.00
884 8 0.00
885 326 0.10
886 8 0.00
887 4 0.00
888 2 0.00
889 5 0.00
890 1 0.00
891 11 0.00
892 42 0.01
893 1 0.00
894 1 0.00
896 73 0.02
897 354 0.11
898 118 0.04
899 48 0.02
900 206 0.06
901 23 0.01
902 189 0.06
903 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (893 bp):
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCTAGTCTA
AGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGAT
CCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGAG
GGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
Found at i:16144659 original size:876 final size:872
Alignment explanation
Indices: 16141686--16145694 Score: 4555
Period size: 897 Copynumber: 4.5 Consensus size: 872
16141676 CCAATCTAGG
*** * * *
16141686 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCATACCGAGGGTTGTGACAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGC
** * * * **
16141751 TCAAGCATGTGCCGGTGTCGTATTTTTCTTCACCGGGGCACCAT--------CA---TCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAA
* * * * * *
16141805 CCTGACCGACGGTATTGAGGTTCCGACGAT-GGGGGGGCCAGGGGTGGTTTACGCACAAGATGTG
131 CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATGTG
*
16141869 TGATGAGG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 CGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16141933 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16141998 TGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTCTT-GCTGAATTGTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT-TTAGCTGAATT-TTT
* *
16142062 TT-TGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
16142126 GAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAACCGTGAAAAATACAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCAT
* *
16142191 CTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
16142256 GCATTGGCATGCAAAAATATGATGATGTGCCTAAACCCACCTACTACTCTATCGATCCACAGCTT
581 CCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16142321 ACGCATCCCGTCTCTCTGGCC-GACGTAGTG-CCA------GCCCGCTCGTTTCGTCAGTTGGCT
646 ACGCATCCCATCTCTCTGGCCGGA-GTAGTGCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
16142378 TTGGCATACGGAATTCATTCACAGTCTAAGATCAAATCGGACCGAGGGTTATGGTAGCAGTATCG
710 TAGGCATACGGAATTCATTCATAGTCTAAGATCAAACCGGACCGAGGGTTATGGTAGCAGGATCG
* * * ** *
16142443 ACAGCACGCAGCA-GGAGACCCAACCAATCCCCGGCTCACGCATCCTGCCCCTCTGGCCAGC-TG
775 ACAGCACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTTG
* * *
16142506 AGCGCCCACACGCTCGTTTCATGGGTTGTCTTAGGCATA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-G---A
** * *
16142545 CAAAGTTAATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGG-CCAGATCGAG
1 C-------A-T----A-C---G-----G-AGTTCATTCCCAGTCTAAGATC-GGACTGGACCAAG
* * *
16142609 GGTTACGACAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACC
43 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * ** * * *
16142674 ATCACTAGAGCATCGTCGGAGAACCTGACTGACGGCATTGAGGATCCAAAGATC-AGAGGGCCGG
108 ATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCC-G
*
16142738 GGGGGTGTGCGCAC---A--T--GA----TG-TGGTACTTGGCCTTTATATTGGCCCCCTATCCC
172 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
16142791 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
237 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
16142856 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCGCAAAATCTTCTACACTTCG
302 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* *
16142921 GGTTTTTACCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGG
367 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
16142985 GGCCAAAACTCCTTCC-AAAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATG
432 GGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATG
16143049 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTATGA
496 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * *
16143113 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAGCCACCTACC
561 ATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16143178 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGGCCGCCCGCCC
626 ACCCTATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGAGTAGTGCCC-ACCGCCCGCCC
* * *** *
16143243 GCTCGTTTCGTCGGTTGGCTTAGGCACACGGAATTCATTCTTAGTCTAAGATTGGACCAGACCGA
690 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCATAGTCTAAGATCAAACCGGACCGA
* * * *
16143308 GGGCTATGGCAGCAGGATC-AGCAGCATC-CAGAGGGGGACCCGATCGATCCCCGGCTTGCTCAT
755 GGGTTATGGTAGCAGGATCGA-CAGCA-CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * *
16143371 CCCGCCCCTTTGGCCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGG
818 CCCGCCCCTCTGGCCGCTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGA
16143426 CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C-----T-GGACCA-A--
* * * * * * *
16143491 GAAGGTTAC-AGCAGCACATGCTAGGCTTGGGCATGTGCAGGTGCCGCATTTATCTTCGTTGAGG
42 G--GGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
16143555 CACCATCGCCGGAGAATCGTCGGAGAACCTGACCGACGGCATTGGGGCTCTGACGATTGGAGGGG
104 CACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGG
* * *
16143620 CCGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCATAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
16143685 CCCTCATCAAACCTTGAGAACTCACAGCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16143750 CAGTAGCCATTAATGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16143814 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTT
364 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
16143879 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA
429 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCA
* * * *
16143944 TGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGCCTTAAGCGACCATTGTAT
494 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
16144009 GAATTTACAAGACATAAAAATACCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
559 GAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16144074 CCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGAGTAGTGCCCACCCACCTTC
624 CCACCCTATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGAGTAGTG----CCCACC-GC
* * ***
16144139 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATTGGACCG
684 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCATAGTCTAAGATCAAACCG
* * ** * *
16144204 GACTGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGC
749 GACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * * *
16144269 GCATCTTGCCCCTCTGGCCTGCTTG-GCACCCGCACGCTCGTTTCGTTGGTTGGCTTAGA
814 GCATCCCGCCCCTCTGGCC-GCTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGA
* *
16144328 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGCCAGCACGTGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGC
* *
16144393 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTAGAGCATCATCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAA
** * * **
16144458 CCTGACCGGTGACATTGGGGTTCTGGCGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
16144523 ATGGGTGCTGGTACTTGGCCCTTATATT-ACCCCCTATCCCTCATCAAACCCCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
16144587 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
16144652 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTTAGTTGAAATTTTTAGT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGT
* * * * *
16144716 GCATGCCAACAAAAATACAAGGATCACATTTACCAAGTTTGGGGCCAAAACTACTGCTG-AAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * * *
16144780 TTTTACAAAATCCCGAAGCGCAAAAAGTTTCAAAAATAATGAAAAATAGAGAACGAGCCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
*
16144845 CCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCC-
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGCCA
* * * * * *
16144909 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCTACCGACCACCCTATCGATACACGGCTTGCA
584 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* * * *
16144974 CATCCCATCTCTCTAGCCGGCGCAGTG-CCAGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
649 CATCCCATCTCTCTGGCCGGAGTAGTGCCCA--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
16145038 GGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGCTTACGATAGCAGGATCGAT
712 GGCATACGGAATTCATTCATAGTCTAAGATCAAACCGGACCGAGGGTTATGGTAGCAGGATCGAC
* * *
16145103 AGCACACAGAGGGGGACTCGACCGATCCCCGGCTT-CTGCATCCCGCCCCTCTGGCCGATTGAGC
777 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGCTTGAGC
* *
16145167 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGG
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGA
* *
16145199 CATACGGAGTTCATTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACT
1 CATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA---C--T----G-----GA-C----C--A--
* * * * * *
16145264 GAGGGTTGTGACAGCACATGCTGAGCTCAGGCACGTGCTGGTGCCACATTTTTCTTCGTCGAGGC
41 -AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * ** * *
16145329 ACCATCGCCGGAGCATTGCCGGGGAACATGACCGGTGGAATTGGGGTT-TCGACGATCGAGGGGG
105 ACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGGGGG
* *
16145393 CCGGGGGGGGTGTGCGTACAT-ATTGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCC
169 CC--GGGGGGTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16145457 TATCCCTCATCAAACCTCGAGAACTCACACCTCGTTAAAGAGCATTTGAGATTTTAAAGGTTTGC
231 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
16145522 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
296 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * * * * *
16145587 ACTTCCAATTTTTAGCTGAGTTTTTTTGTGCACGCCAACCAAAATAGAAGGATCACGTCTACCAA
361 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
16145652 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
16145695 ACCCCTCTGG
Statistics
Matches: 2698, Mismatches: 307, Indels: 248
0.83 0.09 0.08
Matches are distributed among these distances:
859 20 0.01
860 4 0.00
861 1 0.00
862 1 0.00
865 1 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 1 0.00
870 8 0.00
871 185 0.07
872 5 0.00
873 4 0.00
874 2 0.00
875 289 0.11
876 271 0.10
877 108 0.04
878 153 0.06
879 176 0.07
880 6 0.00
881 96 0.04
882 4 0.00
883 1 0.00
884 7 0.00
885 262 0.10
886 7 0.00
887 3 0.00
888 3 0.00
889 3 0.00
890 1 0.00
891 9 0.00
892 46 0.02
894 1 0.00
896 71 0.03
897 364 0.13
898 115 0.04
899 48 0.02
900 201 0.07
901 25 0.01
902 189 0.07
903 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATT
GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
TCCCATCTCTCTGGCCGGAGTAGTGCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAATTCATTCATAGTCTAAGATCAAACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGA
Found at i:16145234 original size:26 final size:26
Alignment explanation
Indices: 16145198--16145250 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16145188 GTTGACTTAG
*
16145198 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16145224 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16145250 G
1 G
16145251 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16145798 original size:26 final size:26
Alignment explanation
Indices: 16145753--16145824 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
16145743 TAGGCATACA
**
16145753 GAGTTCATTCTTAGTCTAAGCACACG
1 GAGTTCATTCCCAGTCTAAGCACACG
* *
16145779 GAGTTCATTCCCAGTATAAGCATACG
1 GAGTTCATTCCCAGTCTAAGCACACG
16145805 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
16145825 ATTAGATCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCACACG
Found at i:16147763 original size:26 final size:26
Alignment explanation
Indices: 16147726--16147778 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16147716 GTTGACTTAG
*
16147726 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16147752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16147778 G
1 G
16147779 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16148097 original size:883 final size:884
Alignment explanation
Indices: 16145798--16149358 Score: 4616
Period size: 884 Copynumber: 4.0 Consensus size: 884
16145788 CCCAGTATAA
** * * * * * * *
16145798 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAAGGGTGCA--GCAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGT-TATGGTAGCAGGATCAA
* *
16145861 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCCGCTGAGC
64 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCCGCTGAGC
* * * *
16145926 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGATGGAGTTCATTCCCAGTCTAAGCATACGA
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* **
16145991 AGTTCATTCCCAGTCTAAGATCAGAGT-GGACCGACGATTGCGGCAGCACATGCTGGGCTC-GAT
194 AGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
16146054 ATTGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCGCCGGAGAACCTGACC--CATGGCA
258 A-TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCA--GCA
* * * * * * *
16146117 TTGGGGTTCCGTCGGTC-GGGGGACCAGGGGGTGTGCACACATGATGTGCGATGGGTGTTTGTAC
320 TTAGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * ** *
16146181 TTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAA-TGCATGCCCCCTTAAAGAGT
385 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-CACACCCCCTTAAAGAGC
* * *
16146245 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAATGTTTGAAATGGGGACACTTTTTTC
449 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16146310 AAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
514 AAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * * *
16146375 ATACAAGGATCCCAT-GACCAACTTTAGGGCCGAAACTTCTTCCGAAAAAATTTTAACAAATCCC
579 ATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * *
16146439 GAACCGTAAAAGGTTTTGAAAATCGTG-AAAATA-AAAATGAGTCGTTCTTGCACACGGAACTTC
644 GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG-TCTTGC-CATGAAACTTC
* * * *
16146502 ACGTGAA-GGTTAA-GCACCATTATATGAATTTACAAG-CATTAAAAATGGCATTGGCACGTAAA
707 ACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGACA-TAAAAATGGCATTGGCATGCAAA
* * * * * *
16146564 AATATGAAGATCTGCCTAAAGCCACCTACCACCCTATTGATCAACGACTTGCGCATCCCGTCTCT
771 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
16146629 CTGGTCGACGTAATGCCCGCCCGCCCGTCCACCCGGTACTTTCATCGGTTGGCTTAG
836 CTGGCCGGCGTAGTGCCCGCCCGCCCG----CTC-G---TTTCATCGGTTGGCTTAG
* * * ***
16146686 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGATCGAGGGTTATGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATCAACA
* * * * * *
16146751 ACACGTAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCAG
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCCGCTGAGC-G
* * * *
16146816 -CCGCACACTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATTCGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * * * *
16146880 GTTCATTTCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCAGTAGCACATTCTAGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
16146945 GTGCTGGTGCCGTATTTTTCTTCGTC--GG-AGCATCACCGGAGAACCTAACCGGCGGCATTAGG
260 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTAGG
* * *
16147007 GTTCCCACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGG
325 GTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
16147072 CCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
389 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
16147137 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATG
454 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * * *
16147202 GTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAAATATTTAGTGCGTACCAACAAAAATACA
519 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
16147267 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCTG-AAAAATTTTAAAAAATCCCGAACC
584 AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
16147331 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAA
649 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
16147396 GGGTTAAGGGACCATTGTATCAATTTAAAAGATATAAAAATGGCATTGGCATGCAAAAATATGAA
714 GGGTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAA
* * *
16147461 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTTGCCGG
779 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
16147526 CGTAGTGCCCACCCGCTCGCTCGTTTCATCGGTTGGCTTAG
844 CGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * **
16147567 GCATACGGAGTTCATTCCCAGTCTAACATTGGACCAGACCGAGGGTTATGGTAATAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATCAACA
* * * *
16147632 GCACGCAGAGAGGGACCCGACTGATCCCCGGCTTGCGCATCCAGCCCCTCTAG-CCGACTGAGCG
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCCG-CTGAGCG
* * *
16147696 CCCGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
16147761 GTTCATTCCCAGTCTAAGATCGGATCGGATCAACGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
16147826 GTGCTGGTGTCGCATTTTTTTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGCAGCATTAAG
260 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTAGG
* * * ** *
16147891 GTTCTGGCGGTCGGGGGGGTAAGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGC
325 GTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16147956 CCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
390 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
16148021 AATTTTACAGGTTTGTTGCCAGTAGCCATTGAAGTGTCTGAATTGGGGACAGTTTTTTCAAATGG
455 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
16148086 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTGTGCGTGCCAAAAAAAATACAA
520 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * **
16148151 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCG
585 GGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
16148216 TAAAAAGTTTTGAAAATCGTGAAAAATATAAAACGAGTCCTCTTGCCATGAAACTTCACCTGAAG
650 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
16148281 GGTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGGAGGCAGAAATATGAAG
715 GGTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAAG
* * * *
16148346 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTATCTGGCCGGT
780 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
16148411 GTAGTGCCCGCCCGCCCGCTTGTTTCGA-CGGTTGGCTTAG
845 GTAGTGCCCGCCCGCCCGCTCGTTTC-ATCGGTTGGCTTAG
** * * * *
16148451 GCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCCAGGGTTACGGTAGCAGGAT-AAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATCAA-C
* * **
16148515 AGCACGCAGAGGGGGACCCGACCGATCCCTGACTCGCGCATCCTA-CCCCTCTGGCCCGCTGAGC
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCC-AGCCCCTCTGGCCCGCTGAGC
* * * * *
16148579 GCCCGTACGCTCGTTTTGTGGGTTGACTAAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
16148644 AGTACATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGACAGCACATTCTGGGCTCGGGC
194 AGTTCATTCCCAGTCTAAGATCAGATC-GGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * * *
16148708 ATGTACCGGTGCTGCATTTTTCTTCATCGGGTCACCATCACCGGAGAACCTGACCGACGGCATTG
258 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTA
* * * ** * *
16148773 GGGTTCTGACGATCGAGGGGGCCAGGGGGTGTGCGTACATGATGTTTGGTGGGTGTTGGTACTTG
323 GGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
16148838 GCCCTTATATTGGCCTCCTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
388 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
16148903 GAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATGGGGACACTTTTTTCAAAT
453 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
16148967 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATCCCAACAAAAATAC
518 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
16149032 AAGGATCACGTCTTCCATGTTTACGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCCGAAC
583 AAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
** *
16149097 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGA
648 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
16149162 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAAAAATATGA
713 AGGGTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGA
* ***
16149227 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGATA
778 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
16149292 GCGTAGTGCCCGCTTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
843 GCGTA------G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
*
16149342 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
16149359 TGAAAACTCC
Statistics
Matches: 2340, Mismatches: 297, Indels: 69
0.86 0.11 0.03
Matches are distributed among these distances:
880 3 0.00
881 257 0.11
883 583 0.25
884 695 0.30
885 42 0.02
886 10 0.00
887 287 0.12
888 278 0.12
889 134 0.06
890 2 0.00
891 49 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATCAACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCAGCCCCTCTGGCCCGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGCAGCATTAGGG
TTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
GTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAAGA
TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:16148640 original size:26 final size:26
Alignment explanation
Indices: 16148605--16148662 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
16148595 TGTGGGTTGA
* *
16148605 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACGGAGTACATTCCCAGT
*
16148632 CTAAGCATATGGAGTACATTCCCAGT
1 CTAAGCATACGGAGTACATTCCCAGT
16148658 CTAAG
1 CTAAG
16148663 ATCAGACTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTACATTCCCAGT
Found at i:16149832 original size:26 final size:26
Alignment explanation
Indices: 16149796--16149848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16149786 TTTGACTTAG
* *
16149796 GCATATGGAGTTCATTCTCAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16149822 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16149848 G
1 G
16149849 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16151987 original size:366 final size:364
Alignment explanation
Indices: 16151314--16151990 Score: 1081
Period size: 366 Copynumber: 1.9 Consensus size: 364
16151304 AGCATCACCG
* * *
16151314 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTG
1 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGAGGGGCCCGGGGGTGTG
*
16151379 CGCACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
66 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
16151444 CTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTA
131 CTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
* *
16151509 AAGTGTCTGAAATGGGGACACTTTTTTCACATGGCAACCAAATCTTATAGACTTCGAGTTTTTAG
196 AAGTGTCTGAAATGGGGACACTTTTTTCACATGGCAACAAAATCTTATACACTTCGAGTTTTTAG
*
16151574 CTGAAATTTTTTGTGCATGCCACAAAAATTACAAGGATCACGTCTACCAAGCACATACTAGGCTC
261 CTGAAATTTTTTGTGCACGCCACAAAAATTACAAGGATCACGTCTACCAAGCACATACTAGGCTC
16151639 AGGGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTCA
326 AGGGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTCA
* * *
16151678 GAGCATCGTCGGAGAACTTGACCGACGGCATTGGAGTTCCGACGATCGAGGGGCCCGGGGGGGTG
1 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGAGGGGCCC--GGGGGTG
** *
16151743 TGCGCACATGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
64 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16151808 ACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
129 ACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCAT
* * *
16151873 TAAAGTGTCTGAAATGGGGACACTTTTTTCGA-ATGATC-ACAAAATCTTGTACACTTTGAGTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTC-ACATG-GCAACAAAATCTTATACACTTCGAGTTT
* *
16151936 TTAGCTGAATTTTTTTGTGCACGCCAACAAAAA-TACAAGGATCATGTCTACCAAG
257 TTAGCTGAAATTTTTTGTGCACGCC-ACAAAAATTACAAGGATCACGTCTACCAAG
16151991 TTTGGGGTGA
Statistics
Matches: 285, Mismatches: 23, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
364 50 0.18
366 226 0.79
367 9 0.03
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (364 bp):
GAGCATCGCCAGAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGAGGGGCCCGGGGGTGTG
CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCACATGGCAACAAAATCTTATACACTTCGAGTTTTTAG
CTGAAATTTTTTGTGCACGCCACAAAAATTACAAGGATCACGTCTACCAAGCACATACTAGGCTC
AGGGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTCA
Found at i:16152485 original size:26 final size:26
Alignment explanation
Indices: 16152450--16152502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16152440 TTGACTTAAG
16152450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16152476 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16152502 G
1 G
16152503 AATGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16153353 original size:26 final size:26
Alignment explanation
Indices: 16153323--16153375 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16153313 ATTAACTTAG
16153323 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCACTT-CCAGTCTAA
* *
16153349 GCATATGGAGTTCACTTTCAGTCTAA
1 GCATACGGAGTTCACTTCCAGTCTAA
16153375 G
1 G
16153376 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCACTTCCAGTCTAA
Found at i:16154220 original size:26 final size:26
Alignment explanation
Indices: 16154184--16154236 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16154174 CTTGACTTAG
*
16154184 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16154210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16154236 G
1 G
16154237 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16156836 original size:26 final size:26
Alignment explanation
Indices: 16156800--16156852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16156790 GTTGACTTAG
*
16156800 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16156826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16156852 G
1 G
16156853 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16158587 original size:26 final size:26
Alignment explanation
Indices: 16158558--16158610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16158548 GTAGACTTAG
*
16158558 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16158584 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16158610 G
1 G
16158611 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16159479 original size:26 final size:26
Alignment explanation
Indices: 16159443--16159495 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16159433 GTTGACTTAG
16159443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16159469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16159495 G
1 G
16159496 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16161027 original size:903 final size:890
Alignment explanation
Indices: 16157691--16162842 Score: 6740
Period size: 902 Copynumber: 5.8 Consensus size: 890
16157681 GTTGACTTAG
* * * * * *
16157691 GCATACGGAGTTCATTCCTAGCCTAAGATCCGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
16157756 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGCCACCATCACCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGC-AGAGA
* * *
16157821 ACCTGACCGACGGCATTGGGGTTCAGGCGATCGGTGGGGCCGGGGGGTGTTGTGCGCACATGATG
130 ACCTGACCGACAGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG-G-TGTGCGCACATGATG
* * *
16157886 TGCGATGGG-G--GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGACCTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16157948 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16158013 ACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * * *
16158078 TGTGCACGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGAGGCCAAAAGTCCTTTCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAA
* * ** *
16158143 AAATTTTAAAAAATCCTGAACTGCAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * **
16158207 TTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATCAATTTACAAGATATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16158272 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
16158337 TGCATCCCGTCCCTCTTGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGGC
646 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * **
16158402 ATACAGAGTT-TTTCCCAGTCTAACATTGGACCAGACTGAGGGTTACGGCAATAGGATTGACAGC
711 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGATTG-CAGC
* * *
16158466 ACGCAGAGGGGGACCCAACTGATCCCCGGCTTGCGCATCCCACCC-CTATGGCCGGCTGAGCGCC
775 ACGCAGAGGGGGACCCATC-GATCCCCGGCTTGCGCATCCCGCCCTCTA--GCCGACTGAGCGCC
* * * *
16158530 CGCACGCTCGTTCCGTTGGTAGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16158584 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
16158649 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCAT---C---G--T--CAGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCAGAGAA
* * * *
16158704 CTTGACCGACAGTATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGTACATGATGTGC
131 CCTGACCGACAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
16158768 GATGGGTGCTGGTACTTAGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16158833 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16158898 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * * * * * *
16158963 GCGTGCCAACAAAAATATAAGGATCACATCTACTAAGTTTGGGGCCAAAACTCCATCTGAAAAAT
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAA-
* * ** * ** * *
16159028 TTTTTAAAAAGTCCTAAACCACAAAAAGTTTTGAAAATCGTGAAAAATATAAAACGAGTCCTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16159093 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16159158 TTGGCAGGCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
16159223 CACCCCATCTGTCTGGTCGGTGTACTACCCGCCCGCCCGCTTGTTTCGA-CTGTTGGCTTAGGCA
648 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC-ATCGGTTGGCTTAGGCA
** * * *
16159287 TACAGAGTTCATTCTTAGTCTAAGATCCGACCGGACCCAGGGTTACAACAGCAGG-TTCGACAGC
712 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGATT-G-CAGC
** * * *
16159351 ACGCAGAGGGGGACCCGGGCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGACTAAGCGCCC
775 ACGCAGAGGGGGACCC-ATCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGACTGAGCGCCC
16159416 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
16159469 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * * * *
16159534 CTCGGGCATGTGCTGGTGCTGCGCTTTTCTTCACCGGGTCACCATCGTCGAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CAGAGA
* * * * * *
16159599 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGCGGGTGTGCGCACATGATGTTC
130 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
** * * **
16159664 GGGGGGGTGTTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTAAGAACTCAC
195 -GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16159729 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16159794 GGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * * * *
16159859 GCATTCAAACAAAAATACAGGGATCACGTCTACCAAGTTTG-GGAACAAAACTCCTTCTGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGG-CCAAAACTCCTTCCGAAAAA
* * *
16159923 ATTTTAAAAATTCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16159988 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16160053 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
16160118 CATCCCGTCTCTCTGG-CTGGCGTAGTGCCCGCCCACCCGTTCCCCCGCTCATTTCATCGGTTGG
648 CATCCCGTCTCTCTGGTC-GGCGTAGTGCCCG----CCCG----CCCGCTCGTTTCATCGGTTGG
* * ** * *
16160182 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATTGAGGGTTACGGTAGCAGGAT
704 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGAT
* * * * * * *
16160247 CTGCAGCATGTAGAGGGGGACTCGATCGATCCCTGGCTTGCGCATCCTGCCCTCTAACCGATTGA
769 -TGCAGCACGCAGAGGGGGAC-CCATCGATCCCCGGCTTGCGCATCCCGCCCTCTAGCCGACTGA
* * * * *
16160312 GTGCCCGTACGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
16160371 GCATACGAAGTTCATTCCCAGTCCAAGGTCGAACCGGACCAAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
16160436 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGTAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCAG-AGA
* * **
16160501 ACCTGACC-AGCAGCATTGGGCTTCTGACGAT-GGCGGGAGCCGGGGGGGTGTGTACACATGATG
130 ACCTGACCGA-CAGCATTGGGGTTCCGACGATCGG-GGG-GCCGGGGGGGTGTGCGCACATGATG
* *
16160564 TACGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16160629 ACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTTGTCTGA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGTCTGA
* * *
16160693 AATGGGGACACTTTTTTCAAATGGTCACAAAATGTTATACACTTCGAGTTTTTAACTGAATTGTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* * ** * *
16160758 TTGTGCAAGCCAACAAAAATACAGGGATCGTGTCCACCAAGTTTGCGGCCAAAATTCCTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAA
* *
16160823 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16160888 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16160953 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16161018 GCACATCCCGTCTCTTTGG-CTGGCGTAGT----GCTCGCTCGCTCGTTTCATCGGTTGGCTTAA
645 GCGCATCCCGTCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * ** * *
16161078 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTGGATAGAGGGTTGCAGCAGTAGGATTGGCA
709 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGATT-GCA
* * *
16161142 GCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCCTCTGGCCGACTGAGCG
773 GCACGCAGAGGGGGACCCA-TCGATCCCCGGCTTGCGCATCC--CGCCCTCTAGCCGACTGAGCG
* * * * *
16161207 CCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAC
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16161263 GCATACCGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * * *
16161328 CTCGGGAAGTGTGCTGGTGCCGCATTTTTCTCCGTCGAGGTACCATCGCCAGAGCATCGCCGGAG
66 CTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CAGAG
* * * * *
16161393 AACCTGATCGACGGCATTGGGGTTCCGACGATCAGAGGGGCCGGGGGGTTGTGCGCACAGGATGT
129 AACCTGACCGACAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
16161458 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAATCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16161523 CACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16161588 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
* * *
16161653 GTGCATGCCAAAAAAAATTACAAGGATCACGTCTACCAAGTTTACGACCAAAACTCCTTCCGAAA
387 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAA
* * *
16161718 AAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTT
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
16161783 TTGCCATGAAACATCACGTGAAGGCCTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16161848 CATTGGTA-GCCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 CATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
16161912 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCT
645 GCGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * ** * * * *
16161977 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTGCAGCATCAGGATTG
706 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGATT-
* * * * * * *
16162042 GCAGCACACAGAGGGGTACCCAACCGATCCCCGACTTACGCATCACAC-CCCTCTAGCTGGCTGA
770 GCAGCACGCAGAGGGGGACCC-ATCGATCCCCGGCTTGCGCATC-C-CGCCCTCTAGCCGACTGA
* * * * *
16162106 GTGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16162165 GCGTACGGAGTTCATTCCAAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCT-GG
* *
16162230 G-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CAGAG
* *
16162294 AACCTGACCGAC-GACATTAGGGTTCCGACGAT--------C-GGGGGGTGTGCACACATGATGT
129 AACCTGACCGACAG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
16162349 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGGACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
16162414 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAACGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16162479 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTG
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* * * *
16162544 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAA
*
16162609 ATTTTAAAAAATCTCGAACCG-AAAAAGTTT-AACAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA-AAATCGTGAAAAATAGAAAACGAGTCGTCT
** * *
16162672 TGCCACAAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16162737 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16162802 ACATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGTCCGC
647 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGC
16162843 GCGCCCGTTG
Statistics
Matches: 3745, Mismatches: 439, Indels: 159
0.86 0.10 0.04
Matches are distributed among these distances:
879 23 0.01
880 2 0.00
881 5 0.00
882 264 0.07
883 25 0.01
884 228 0.06
885 236 0.06
886 4 0.00
887 5 0.00
888 180 0.05
889 66 0.02
890 108 0.03
891 224 0.06
892 125 0.03
893 380 0.10
894 257 0.07
895 216 0.06
896 115 0.03
897 175 0.05
899 5 0.00
900 1 0.00
901 85 0.02
902 527 0.14
903 481 0.13
904 7 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCAGAGAA
CCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGATTGCAGCACGCAG
AGGGGGACCCATCGATCCCCGGCTTGCGCATCCCGCCCTCTAGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16161273 original size:26 final size:26
Alignment explanation
Indices: 16161237--16161287 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161227 GTTGACTTAG
*
16161237 GCATACGGAGTTCATT-TCTAGTCTAC
1 GCATACCGAGTTCATTCTC-AGTCTAC
16161263 GCATACCGAGTTCATTCTCAGTCTA
1 GCATACCGAGTTCATTCTCAGTCTA
16161288 AGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACCGAGTTCATTCTCAGTCTAC
Found at i:16164723 original size:900 final size:886
Alignment explanation
Indices: 16162854--16165220 Score: 2928
Period size: 900 Copynumber: 2.6 Consensus size: 886
16162844 CGCCCGTTGG
* * * ** *
16162854 TTTCGTCGGTTGGCTTAGGCATACGAAGTTTGTTCCCAGTCTAAGCATACG-GTATTCATTGCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAG--TTCATTCCCA
* * *
16162918 GTCTAAGATCGAACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
64 GTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
16162983 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC-AGACCGACGGCGATTG
129 GCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCATCGGAGAACCTA-ATCGACGGC-ATTG
** * * * *
16163047 GTTCTATTTTTTTATGCGATC-GAGGGCCGCTGGGGGTGCGTGCTCACATGATGTACG--GGGTG
192 G------GGTTCTA--CGATCAGAGGGCCG--GGGGGT-TGTGCACACATGATGTGCGATGGGTG
* * *
16163109 CT-G-AC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAACCTCGGAGAACTCACA-CCCATTG
246 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTC-GAGAACTCACACCCCCTTA
* *
16163170 AAGAACATTTGAGA-TTTACAGGTTTGC-GCC-GTAGCCATT-AAGCGGTACTGAAAT-GGGACA
310 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGT-CTGAAATGGGGACA
* *
16163230 C-TTTTTCAAATGCGTCACCAAAATGTTGTACACTTTCTCAGAGTTTTTAGCTGAATTTTTTTGA
373 CTTTTTTCAAATG-GTCA-CAAAATCTTGTACAC--T-TC-GAGTTTTTAGCTGAAATTTTTTG-
* *
16163294 TGGATGCCACAGAAAAATACAAGGATACATGTC-ACACAAGTTTGCGGCCAAAAAAATTCCTTCC
431 TGCATGCCA-ACAAAAATACAAGGAT-CATGTCTAC-CAAGTTTGCGGCC---AAAATT-CTTCC
* *
16163358 GAAAAAAAAAATTTTAAAAAATCCCGAACCGTTAAAACAAGTTTCAGAAAATTGTAAAAAATAGA
489 G----AAAAAATTTTAAAAAATCCCGAACCG---AAA-AAGTTTC-GAAAATCGTGAAAAATAGA
* * *
16163423 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
545 AAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAG
* *
16163488 CCATGAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCG
610 CCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * *
16163553 ATCTGCGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGATCGCTCGTTTCATCGGTTG
675 ATCCACGGCTTGCACATCCCATCTCTCTGGCCGACGTAGTGCCCGATCGCTCGTTTCATCGGTTG
* *** * **
16163618 GCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATAGAGGGTTGTGGCAGCAGGA
740 GCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCAACAGAGGGTTAAGGCAGCAGGA
* ** * * * * * * *
16163683 TTGGCCGCATGCAGAGGGGGAATCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACT
805 TTGGCAGCACACAGAGGGGGAACCAACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCAGACT
*
16163748 GAGCGCCCGCACGCTCG
870 GAGCGCCCGCACGCTCA
* * *
16163765 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTTTACGCATACCGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCCCAG
* *
16163830 TCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
65 TCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* **
16163895 CATTTTTCTTCGTCGGGGTACCATCGCCGGAGCATCGCCGGAGAACCTAATCGACGGCATTGGGG
130 CATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCATCGGAGAACCTAATCGACGGCATTGGGG
* *
16163960 TTCTGACGATCAGAGGGGCCGGGGGGTTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGC
195 TTCT-ACGATCAGA-GGGCCGGGGGGTTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
16164025 CCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAATAGCATTTGA
258 CCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16164090 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGG
322 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16164155 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA-AAAAATTACA
387 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAA-TACA
* * *
16164219 AGGATCATGTCTACCAAGTTTACGGCCAAAACTCTTTCCGAAGAAATTTTAAAAAATCCCGAACC
451 AGGATCATGTCTACCAAGTTTGCGGCCAAAATTC-TTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
16164284 GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGATTCAT-TTCGCCATGAAACATCACGTGA
515 G-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTT-GCCATGAAACATCACGTGA
*
16164348 AGGCTTAAGGGACCATTGTATGAACTTACAATCCATAAAAATGGCATTGGCAGGTAGAAATAT-A
578 AGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGA
*
16164412 AGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCC
643 A-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCC
* *
16164477 GACGTAGTGCCCGCCCGTCCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
707 GACGTAGTGCCCG---AT-CG-CT-C--GTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCC
* *
16164542 CAGTCTAAGATCAGACCCAACCA-AGGGTTAAGGCAGCAGGATTGGCAGCACACAGAGGGGTACC
764 CAGTCTAAGATCAGACCCAA-CAGAGGGTTAAGGCAGCAGGATTGGCAGCACACAGAGGGGGAAC
* * *
16164606 CAACCGATCCCTGGCTTACGCATCAC-ACCCCTTTAGCTAG-CTGAGCGCTCGCACGCTCA
828 CAACCGATCCCCGGCTTACGCATC-CTACCCCTCTAGC-AGACTGAGCGCCCGCACGCTCA
* *
16164665 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAG
* * * * *
16164730 TCTAAGATCAAACCGGACTGAGGGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
65 TCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
16164795 TATTTTTCTTCGTC-GGGTCACCATCATCGGAGCATCATCGGAGAACCTGATCGACGGAATTAGG
130 CATTTTTCTTCGTCGGGGT-ACCATCGTCGGAGCATCATCGGAGAACCTAATCGACGGCATTGGG
* * *
16164859 GTTC--CGA--AGA---TCGAGGGG-TGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCC
194 GTTCTACGATCAGAGGGCCGGGGGGTTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
16164916 CTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCACTTAAAGAGCATTTGAG
259 CTTATATTGGCCCCCTATCCCTCATCAAAC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16164981 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGT
323 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
16165046 CACAAAATCTTATACACTTCGAGTTTTTAGCTG-AATATTTTGTGCATGCCAACAAAAATACAAG
388 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAG
* *
16165110 GATCATGTCTACCAAGTTTGGGGCCAAAATTGCTTCCGAAAAAATTTTAAAAAATCTCGAACCGA
453 GATCATGTCTACCAAGTTTGCGGCCAAAATT-CTTCCGAAAAAATTTTAAAAAATCCCGAACCGA
** *
16165175 AAAA-TTTTAAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
517 AAAAGTTTCGA-AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
16165221 CGAAGTTCAT
Statistics
Matches: 1287, Mismatches: 127, Indels: 107
0.85 0.08 0.07
Matches are distributed among these distances:
887 4 0.00
888 34 0.03
889 84 0.07
890 195 0.15
891 10 0.01
892 172 0.13
893 7 0.01
894 3 0.00
895 4 0.00
896 27 0.02
897 5 0.00
898 1 0.00
899 7 0.01
900 310 0.24
901 3 0.00
902 15 0.01
903 34 0.03
904 24 0.02
905 16 0.01
906 24 0.02
907 45 0.03
908 21 0.02
909 13 0.01
910 27 0.02
911 184 0.14
912 17 0.01
913 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGT
CTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCATCGGAGAACCTAATCGACGGCATTGGGGT
TCTACGATCAGAGGGCCGGGGGGTTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGAT
CATGTCTACCAAGTTTGCGGCCAAAATTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAA
GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAA
GGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGACGTAGTG
CCCGATCGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
CAACAGAGGGTTAAGGCAGCAGGATTGGCAGCACACAGAGGGGGAACCAACCGATCCCCGGCTTA
CGCATCCTACCCCTCTAGCAGACTGAGCGCCCGCACGCTCA
Found at i:16167735 original size:742 final size:740
Alignment explanation
Indices: 16166308--16168363 Score: 3216
Period size: 742 Copynumber: 2.8 Consensus size: 740
16166298 TCCGACGATC
* *
16166308 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
16166373 CTCATCAAACTTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16166438 GTAGCCATTAAAATGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * *
16166503 GAGTTTTTAGCTG-AATATTTTCTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG
* * ** * *
16166567 GGGCCAAAAGTGCTTTTGAAAAAATTTTAAAAAATCTCGAACCGAAAAAGTTTAAGAAACCGTGA
261 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAGTTTGA-AAATCGTGA
* *
16166632 AAAATAGAAAACTAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16166697 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16166762 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTAGTCGACGTATTGCCCGCCCGCCCGCCCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCGCGCCCG
* * *
16166827 TTGGTTTCATCGGTTGGCTTAGGCATACAGAGTTTGTTCCCAGTCTAAGCATACAGTATTCATTG
520 TTGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAGCATACAGTATTCATTC
** *
16166892 CCAGTCTAAGATCGAACCAGATTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
585 CCAGTCTAAGATCGAACCAGAGCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
* * *
16166957 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
650 GCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT
*
16167022 GGGGTTCCTGCGATCGAGGGGGACGT
715 GGGGTTCCTGCGATCGAGGGGCACGT
*
16167048 GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
16167113 CGCATCAAACCTCAAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16167178 TTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
*
16167243 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTG
196 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG
** ** * *
16167308 GATCCAAAACCCCTGCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGATTTGAAAATCGTG
261 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-AAAAAG-TTTGAAAATCGTG
* * *
16167373 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
16167438 ATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
16167503 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCGCGCCC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCGCGCCC
*
16167568 GTTGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAGCATACGGTATTCATT
519 GTTGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAGCATACAGTATTCATT
* * *
16167633 CCCAGTCTAAGATCGGACTAGAGCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
584 CCCAGTCTAAGATCGAACCAGAGCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
* *
16167698 TGTCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGTGGCAT
649 TGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
*
16167763 TGGGGTTCCTGCGATCGAGGGGCCCGT
714 TGGGGTTCCTGCGATCGAGGGGCACGT
*
16167790 GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
16167855 CTCATCAAACCTCGAGAACCCACACCCCTATAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
66 CTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
16167920 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * * *
16167985 GAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATAAAAGGATCA-TGTCCACCAACTTT
196 GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTT
* * * * *
16168049 GGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCGAAAATCAT
260 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-GAAAAAGTTT-GAAAATCGT
* *
16168114 GAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCATGTCAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
16168179 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACTCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
16168244 CACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCG--CG-C
* * * **
16168309 TGCCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAG
515 -GCCCGTTGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAG
16168364 ATCGGACTGG
Statistics
Matches: 1202, Mismatches: 104, Indels: 14
0.91 0.08 0.01
Matches are distributed among these distances:
740 195 0.16
741 85 0.07
742 866 0.72
743 4 0.00
744 2 0.00
745 1 0.00
746 49 0.04
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (740 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
GAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG
GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAGTTTGAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCGCGCCCGT
TGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAGCATACAGTATTCATTCC
CAGTCTAAGATCGAACCAGAGCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
CCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
GGGTTCCTGCGATCGAGGGGCACGT
Found at i:16168532 original size:26 final size:26
Alignment explanation
Indices: 16168496--16168548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16168486 GTTGACTTAG
*
16168496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16168522 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16168548 G
1 G
16168549 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16170041 original size:901 final size:904
Alignment explanation
Indices: 16167572--16173899 Score: 8089
Period size: 903 Copynumber: 7.1 Consensus size: 904
16167562 GCGCCCGTTG
* * **
16167572 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTTGTTCCCAGTCTAAGCATACGGTA-TTCATTCCC
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCC
* * * *
16167636 AGTCTAAGATCGGACTAGAGCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGT
65 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
*
16167701 CGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGG
130 CGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* *
16167766 GGTTCCTG-CGATCGAGGGGCCCGTGGGGG-GTGTGCGCACAAGATGTGCGATGGGTGCTGGTAC
195 GGTTCC-GACGATCGAGGGGGCCG-GGGGGTG-GTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16167829 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACA-CCCCTATAAAGAGC
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-TAAAGAGC
* *
16167893 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTC
321 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16167958 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAA
386 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
16168023 ATAAAAGGATCATGTCCACCAACTTTGGGG-CAAAAAATCCTTCCAAAAAAATTTTAAAAAATCT
451 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATA-CCTTCCGAAAAAATTTTAAAAAATCC
* * * *
16168087 TGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCA
515 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
16168152 TGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
580 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
16168217 TATGAAGATGTACCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCT
645 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
16168282 GGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAG
710 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * *
16168347 TTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGTAGCAGGATCGGTAGCATGCAGAG
775 TTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* ** * * ** *
16168412 GAGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGATTGAGTGCCCGCACGCTC
840 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
*
16168477 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * ** * *
16168542 GTCTAAGATCAGACCAGACTGAGGGTTACGGTGGCACATACTGGGCTCGGCCATGTGCTGGTGCC
66 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
16168607 ACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCTTTGGG
131 GCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * *
16168672 GTTCCGGCGATCGAGGGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
196 GTTCCGACGATCGAGGGGGCCGGGGGGTG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** * *
16168737 GCCCTTATATTGGCCCCCTATCTGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGCGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
16168802 GAGATTTTACAGGTTTGCTGCCAGTA-TCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
16168866 GGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA-AAAAATAC
390 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** ** *
16168930 AAGGATCACT-TTTACCAAGTTTGGATCCAAAACCCCTGCCGAAAAAATTTTAAAAAATCCCGAA
455 AAGGATCA-TGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * *
16168994 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACATG
519 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
***
16169059 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * *
16169124 AAGATGTGCCTAAACCCACCTATCACCCTATCGATCTACTGCTTGCGTATCCCGTCTCTCTAGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** *
16169189 GGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTAATCAGTTGGCTTAGGCATACGGAGTTCA
714 GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
16169254 TTCCCAGTTTAAGATCAGACCAGACCAAGAGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
779 TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * *
16169319 ATCCGACCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTC
844 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
* * * * *
16169380 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCGAATCTAAGCGTACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
16169445 GTGTAAGATTGGACCAGACCGAGGGTTGGGGCAGCACATTCT-AGCTTCGGGCATGTGCTGGTGC
66 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGC
** * * * * * * *
16169509 CGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCAGAGAAGCTGGCCGACGACATTGG
130 CGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* *
16169574 GGTTTCGACGATTGAGGGGGCCGGGGGGTGGT-CGCACATGATGTGCGATGGGTGCTGGTACTTG
195 GGTTCCGACGATCGAGGGGGCCGGGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
16169638 GCCCTTATATTGGCCCCCTATACTTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
16169703 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-GAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
16169767 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAATTAC
390 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
16169832 AAGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCAAAA
455 AAGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
16169897 CG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGA
520 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
16169961 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAACAGAAATATGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* **
16170026 AGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
16170091 GCGTAGTGCCCGCCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTTAT
715 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * **
16170156 TCTCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGTAGCAGGATTGGCAGCACATAGAGGGGGA
780 TCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * * *
16170221 CTCGATCTATCTCCGGGTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTC
845 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
*
16170281 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTGCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG----C-------A-T---A
* * *
16170346 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAACACAT
51 --C---G-----G-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
** * * **
16170411 GCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCAGGGCACCATCACCGGAGCATCAT
105 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGC
* * *
16170476 CGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT-GTGTGCACAT
170 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGGTGCGCACAT
* *
16170540 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGA
235 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16170605 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
300 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
16170670 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAGT
365 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-T
16170734 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CCTT
429 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTT
* * * *
16170798 ACGAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAACA
493 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACG
* * * * *
16170862 AGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAACCCCTA
557 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
16170927 AAAATGGCATTGGCATGCAGAAATATAAAGATGTACCTAAACCCACCAACCACCCTATCAATCCA
622 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * **
16170992 CGGCCTACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTTGCCCGCCCGCTCGTTTCG
687 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * *** *
16171057 TTGGTTGGCTTAGACATACGAAGTTCATTCCTAGTCTCAGATC-GAATTGAATCGAA-GGTTGCG
752 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A-CCAAGGGTTGCG
* * * ** * * *
16171120 GCAGCAGGTTCGACAGCACATAGAGGGCGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTC
815 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
16171185 TGGCTGGCTGAGTGCTTGTACGATC
880 TGGCCGGCTGAGTGCCTGCACGCTC
* * * *
16171210 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGGATACGGAGTCCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
16171275 GTCTAAGATCGGACCGGACCGAGGCTTACGGTAGCACATGCTGGGCTCGGACATGTGCTGGTGCC
66 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
16171340 GTATTTTTCTATC-CCGGGGCATCATCACCGGAGCATTGCCGGAGAACCTGATCGGCGGCATTGG
131 GCATTTTTCT-TCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * * * *
16171404 GGTTCCGACGATCGGGGGGGCGGGGGAGGT-GTGCACACACGATATGCGATGGGTGCTAGTACTT
195 GGTTCCGACGATCGAGGGGGCCGGGG-GGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16171468 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
16171533 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
324 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
16171598 TGGTCA-AAAAGTCTTCTACACTTTGAGTTTTTAGCTGAATTGTTTTTGTGCATGCCAACAAAAA
389 TGGTCACAAAA-TCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAA
* * ** *
16171662 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTGAAAAAAATCTC
452 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTTCCGAAAAAATTTTAAAAAATCCC
* * *
16171726 GAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCAC
516 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* **
16171791 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTTATAAAAATGGCATTGGCATGCAGAAAT
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
16171856 ATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTA
646 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
16171921 GCCAGCGTAGT--------G--C-CCC-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
711 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * ** *
16171974 TCATTCCTAGTCTAAAATTGGACCAGACCAAGGGTTGCAATAGCAGGATCGCCAATACGCGGAGG
776 TCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
* * * *
16172039 GGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGGCAGCTGAGTGCCTGCACGCTC
841 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
* * *
16172103 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *** * *
16172168 GTCTAAGATCAGATTGGATCGAGGTTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
66 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
16172233 GCATTTTAAT-TTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCAGCGGCCTTG
131 GCATTTT--TCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
16172297 GGGTTCCGGCGATCG-GGGTGCCGGGCGGGT-GTGCGCACATGATGTGTGATGGGTGCTGGTACT
194 GGGTTCCGACGATCGAGGGGGCCGGG-GGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** * **
16172360 TCACCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGA-AACTCACACTTCCTTAAAGAGCAT
258 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
16172424 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAGGTGTCTGAAAT-GGGACACTTTTTTCAA
323 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* **
16172488 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAACAAAAAT
388 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** *
16172553 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGA
453 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
16172618 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGCAAACGAGTCGTCTTGCCATGAAACTTCACGT
518 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
**
16172683 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
**
16172748 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTGGC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * ** * *
16172813 AGGCGTAGTGCCCGCGTGCCCGCCCGCCCGCTCGTTTCATCATTTGGCTTAGGCATATGGAGTTT
713 CGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
16172878 ATTCCCAATCTAAGATCAGATCTGACCAAGGGTTGCGGTAGTAGGATCGGGAGCACGCAGAGGGG
778 ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
** * *
16172943 GACCCGACCGATCCCCATCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCTGCAGGCTC
843 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
* * *
16173005 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATAC-GAGTTCTTTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
16173069 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGATGCC
66 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
16173134 GCATTTTTCTTCGTCGGGGCACCATTACCGTAGCATCGCCGGAGAACCTGAACGGCGGCATTGGG
131 GCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
16173199 GTTCTGGA-GATTGA-GGGGCCGGGGGGT-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
196 GTTC-CGACGATCGAGGGGGCCGGGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* **
16173261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTTCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
16173326 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTTAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* ** *
16173390 GCTCACAAAATCTTGTACA-TTTCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATA
390 GGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
** * **
16173454 CAAGGATCATAACTACC-A---T---G-----A-A-C-T--GCAAAAA-GGT------T------
454 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
16173489 ---CAAAAA---TC------C-TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
519 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
16173541 AAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
*
16173606 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
16173671 GGTGTAGT--------GCCCGCCCGCCTGTTCATTTCGTCGATTGGCTTTGGCATACGGAGTTCA
714 GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * *
16173728 TTCCCAGTCTAAGATCGG-CTCGGACCGAGGGTTGCGACAGCAGGATCGACATCACGCAGAGGGG
779 TTCCCAGTCTAAGATCGGAC-CAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
* * ** *
16173792 GACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCTGAACGCTC
843 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
* * *
16173854 ATTTCGTGGGTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAAG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16173900 ATCGAACCGG
Statistics
Matches: 4758, Mismatches: 588, Indels: 210
0.86 0.11 0.04
Matches are distributed among these distances:
849 188 0.04
857 170 0.04
858 1 0.00
864 2 0.00
867 6 0.00
876 1 0.00
882 1 0.00
883 6 0.00
885 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
890 268 0.06
891 49 0.01
892 72 0.02
893 325 0.07
894 63 0.01
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 76 0.02
900 223 0.05
901 634 0.13
902 284 0.06
903 724 0.15
904 290 0.06
905 569 0.12
906 6 0.00
909 1 0.00
912 1 0.00
913 1 0.00
914 1 0.00
916 1 0.00
917 1 0.00
918 2 0.00
921 1 0.00
926 3 0.00
927 292 0.06
928 129 0.03
929 358 0.08
930 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCGAGGGGGCCGGGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTC
Found at i:16170336 original size:26 final size:26
Alignment explanation
Indices: 16170300--16170378 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16170290 GTTGACTTAG
*
16170300 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16170326 GCATACGGAGTTTATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16170352 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16170378 G
1 G
16170379 ATCGGACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16171260 original size:26 final size:26
Alignment explanation
Indices: 16171231--16171281 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171221 TGACTTAGGC
*
16171231 ATACGGAGTTCATTCCCAATCTAAGG
1 ATACGGAGTCCATTCCCAATCTAAGG
*
16171257 ATACGGAGTCCATTCCCAGTCTAAG
1 ATACGGAGTCCATTCCCAATCTAAG
16171282 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTCCATTCCCAATCTAAGG
Found at i:16172152 original size:26 final size:26
Alignment explanation
Indices: 16172122--16172174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172112 GTTGACTTAG
*
16172122 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
16172148 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16172174 G
1 G
16172175 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16173066 original size:25 final size:26
Alignment explanation
Indices: 16173024--16173075 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16173014 GTTGACTTAG
*
16173024 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16173050 GCATAC-GAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16173075 G
1 G
16173076 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16174690 original size:26 final size:26
Alignment explanation
Indices: 16174660--16174712 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16174650 GTTGACTTAG
16174660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16174686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16174712 G
1 G
16174713 ATTGGATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16175510 original size:26 final size:26
Alignment explanation
Indices: 16175462--16175512 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16175452 GTTGACTTAG
*
16175462 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
16175488 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
16175513 TGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16175988 original size:778 final size:770
Alignment explanation
Indices: 16174227--16176564 Score: 2819
Period size: 770 Copynumber: 3.0 Consensus size: 770
16174217 CAAGTTTGGG
* **
16174227 GCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCATGA
1 GCCAAAACCCCTTTC-GAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGA
* * *
16174291 AAAATAGAAAACGAGTCATCTTGCCATTAAAACTTCATGCGAAGGCTTAAGGGACCATTGTATGA
65 AAAATAGAAAACGAGTCATCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
16174356 ATTTACAAGCCCTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
129 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
16174421 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA---------GTC-CCCGC
194 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGC
** * * *
16174476 CTACTCGTT-CT-GTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA
259 CCGCTCGTTATTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** ** *
16174539 -TCGAGGGTTGCAGTAGCAGGATGGGTAGCACACAG-AGGTGGACCCGACCGATCCCCGGCTTGT
323 CT-GAGGGTTGCGGAAGCAGGATGGACAGCACACAGAAGG-GGACCCGGTCGATCCCCGGCTTAT
* * * * * *
16174602 GAATCTCGCCCCTCTGGCCGATTGAGCGCCCATACACTCATTGCATGGGTTGACTTAGGCATACG
386 GCATCTCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
16174667 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGG-CTGAGGG
451 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACT-GGACTGAGGG
* *
16174731 TTGCTGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTCTTGCCCA-GGCACCA
514 TTG-TGTAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCTGCATTTTTCTTG-CCAGGGCACCA
* * * *
16174794 TCGTCGGAACATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGG
576 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
* * *
16174859 GGGTGTACGCACATGATGTGCGATGGGTGATGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTC
641 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* **** * *** ***
16174924 ATCAAACCTCGCAG-ACTCACTTCGGGTTTTTAGCTGATTGTTTTTGTGCATGCCAAGAAAAATA
706 ATCAAACCTCG-AGAACTCAC-AC--CCCCTTA----A-AG-----G-GCAT-TTGAG-ATTTTA
** * *
16174988 CAAGGATCACGTCTACCAAGTTTGG
754 C-AGG-T-TTG-CTGCC-AG--T-A
* * * * *
16175013 GCCCAAAACTCGTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAATTTTCAAAAATCCTGA
1 G-CCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGA
* *
16175078 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAA
65 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
16175143 TTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
16175208 CCCTATCGATCCATGGCTTACGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTGCGCCCG
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGT-CGCCCG
* * *
16175273 CCCGCCCGCTTATTCCGTCGATTGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
258 CCCGCTCG-TTATT-CGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** *
16175338 GGACTGAGGTTTGCGGCAGTAGGATGGACAGCATGCAGAAGGGGACCCGGTCAATCCCCGGCTTA
320 GGACTGAGGGTTGCGGAAGCAGGATGGACAGCACACAGAAGGGGACCCGGTCGATCCCCGGCTTA
16175403 TGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC
385 TGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC
** * *
16175468 GGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGACTGGAAC-GAAG
450 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGG-ACTGAGG
*
16175532 GTTGTAGTAGCACATGCTGGGCTCGAGCAGGTGCTGGTGCTGCATTTTTCTCTGCCAGGGCACCA
513 GTTGT-GTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCT-TGCCAGGGCACCA
** * * *
16175597 TCGTCGGAGCATCGTTAGAGTACCTGACCGATGGCATTGGGGTTCCGACGATCGGGCGGGCCGAG
576 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGG
* * * * * *
16175662 AGGGTGTGCACGCATGGTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT-TCCCT
640 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
16175726 TATCAAAACTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGT
705 CATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGT
16175791 A
770 A
* *
16175792 GCCAGAACCCCTTTCGAAAAAATTTTAAAAAATCTCGAA-TAGCAAAAAGTTTCAAAAATCGTGA
1 GCCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTCGAACT-GCAAAAAGTTTCAAAAATCATGA
* * *
16175856 AAAATAGAAAACGAGTCATCTTGCCATGAAACATGACGTGAAGGCTTAAGGGACCATTGAATGAA
65 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
16175921 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCA
130 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
**
16175986 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCC-T-GCCCGCC
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCC
* * * *
16176049 CGCTCGTTTCATT-G--GTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAATATCAGACTGAA
260 CGCTCG-TT-ATTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
** * * * *
16176111 CCAAGGGTTGCGGAAGCAAGAT-CAGCAGCACACAGAGGGGGACCCGGGT-GATCCCCGGCTTAC
323 CTGAGGGTTGCGGAAGCAGGATGGA-CAGCACACAGAAGGGGACCC-GGTCGATCCCCGGCTTAT
* * * *
16176174 GCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
386 GCATCTCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * **
16176239 GAGTTTATTCCCACTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGT
451 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGACTGAGGGT
* * * *
16176304 TGCGGTAACACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATC
515 TG-TGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTT-GCCAGGGCACCATC
* * * *
16176369 -ACGAAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
578 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
16176433 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
643 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
16176498 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTA
708 CAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
16176561 GCCA
1 GCCA
16176565 TTAAAGTGTC
Statistics
Matches: 1347, Mismatches: 166, Indels: 95
0.84 0.10 0.06
Matches are distributed among these distances:
768 60 0.04
769 121 0.09
770 255 0.19
771 4 0.00
773 1 0.00
774 14 0.01
775 3 0.00
776 1 0.00
777 3 0.00
778 224 0.17
779 1 0.00
780 1 0.00
782 2 0.00
783 4 0.00
784 1 0.00
785 1 0.00
786 143 0.11
787 82 0.06
788 5 0.00
789 4 0.00
790 1 0.00
795 1 0.00
796 3 0.00
797 1 0.00
798 9 0.01
799 2 0.00
800 4 0.00
801 5 0.00
802 250 0.19
803 85 0.06
804 56 0.04
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (770 bp):
GCCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCCC
GCTCGTTATTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
AGGGTTGCGGAAGCAGGATGGACAGCACACAGAAGGGGACCCGGTCGATCCCCGGCTTATGCATC
TCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACTGAGGGTTGTGTA
GCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTGCCAGGGCACCATCGTCGGAGC
ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
Found at i:16176262 original size:26 final size:26
Alignment explanation
Indices: 16176233--16176283 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176223 TTGACTTAGG
*
16176233 CATACGGAGTTTATTCCCACTCTAAC
1 CATACGGAGTTCATTCCCACTCTAAC
*
16176259 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCACTCTAA
16176284 GATCGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCACTCTAAC
Found at i:16177405 original size:26 final size:26
Alignment explanation
Indices: 16177369--16177421 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16177359 GTTGACTTAG
**
16177369 GCATACAGAGTTCATTCGTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16177395 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16177421 G
1 G
16177422 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16177507 original size:260 final size:260
Alignment explanation
Indices: 16177046--16177516 Score: 633
Period size: 260 Copynumber: 1.8 Consensus size: 260
16177036 CAATCCCCAT
* ** * *
16177046 CTTGCGCATCTCGCCCCTCTGGCCGGCTAAGCACCTGCACGCTCGTTTCGTGGGTTGATTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGC
* * *
16177111 ATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATTCATAGTCTAAGATCGCATCAGACCG
66 ATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATTCACAGTCTAAGATCGCACCAAACCG
* * * * * * * *
16177176 AGGGTTGCTATAGCACATGCTGATCTCGGGCATGTGCTGGTGCCGCATTTTTCTCCGTCGATGCA
131 AGGGTTGCGATAGCACATACTGAGCTCGAGCATCTGCTAGTGCCGCATTTTTCTCCATCGAGGCA
*
16177241 CCATCGTCGGATCATCGTGGCAACAGGATTGGCAACACATAGAGGGGGACCCGATCGATTGCCGG
196 CCATCGTCGGAGCATCGTGGCAACAGGATTGGCAACACATAGAGGGGGACCCGATCGATTGCCGG
* * *
16177306 CTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGC
** * * * *
16177371 ATACAGAGTTCATTCGTAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAG-ACCAAACC
66 ATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATTCACAGTCTAAGATC-GCACCAAACC
* * *
16177435 GAGGGTTGCGGTAGCACATACTGGGCTCGAGCATCTGCTAGTGCCGTATTTTTC-CTCATC-AGG
130 GAGGGTTGCGATAGCACATACTGAGCTCGAGCATCTGCTAGTGCCGCATTTTTCTC-CATCGA-G
16177498 GCACCATCGTCGGAGCATC
193 GCACCATCGTCGGAGCATC
16177517 ACCGGAGAAC
Statistics
Matches: 179, Mismatches: 29, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
259 2 0.01
260 176 0.98
261 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (260 bp):
CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATTCACAGTCTAAGATCGCACCAAACCG
AGGGTTGCGATAGCACATACTGAGCTCGAGCATCTGCTAGTGCCGCATTTTTCTCCATCGAGGCA
CCATCGTCGGAGCATCGTGGCAACAGGATTGGCAACACATAGAGGGGGACCCGATCGATTGCCGG
Found at i:16179012 original size:26 final size:26
Alignment explanation
Indices: 16178976--16179028 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16178966 GTTGACTCAG
16178976 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16179002 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16179028 G
1 G
16179029 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16181329 original size:26 final size:26
Alignment explanation
Indices: 16181300--16181352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181290 GTTAACTTAG
*
16181300 GCATACGGA-TTTCATTCCCAGTCTAA
1 GCATACAGAGTTT-ATTCCCAGTCTAA
16181326 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
16181352 G
1 G
16181353 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:16182720 original size:877 final size:885
Alignment explanation
Indices: 16180968--16184020 Score: 4276
Period size: 907 Copynumber: 3.4 Consensus size: 885
16180958 ACAAAAATAC
* * *
16180968 AAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
* * * * *
16181033 GCCTAAACCCACCTACCACCCTATCGATCAACGGCTTTCGCATGCCGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGG-CG-CG-AC
* * * * * * *
16181098 TGCCCGCACGCCCG-CCGTCCGCTCGTTTCGTTC-ATTGGCTTAGGTATACAGAGTTCATTCCCA
128 CGCCTGC-C-ACCGTCCG--CGCTCATTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * ** * * *
16181161 GTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACACGGATGGGGACCCGA
188 GTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGA
* * * * * *
16181226 CCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCTAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
253 CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCTCCCGCACGCTCGTTTCATGGG
* * * *
16181291 TTAACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACAGAGTTTATTCCCAGTCTAAGATT
318 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT
*
16181356 GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
383 GGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
** ** * * * * * * * *
16181421 TCGTCGGGGCACCATCGTCGGAGAACCTGACCGACAGCATTAGGGTTCCGGTGTTCGAGGGGGCC
447 TCACCGGGGCACCATCACCGCAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCC
* *
16181486 GGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACGT-GCCCTTATATTGGCCCCCTATC
512 GGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
16181550 CCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTAGATATTTTACAGTTTTGCTGCT
577 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
16181615 AGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
642 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16181680 CAAGCTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
707 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** * * *
16181745 GGGGCTAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
772 TTGGCCAAAACTCCTTTC-GAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
16181809 TGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTT
836 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
16181859 AAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
1 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
* * *
16181924 GCCTAAATCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGC-C-A-C-C
66 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCGCGACCGC
* * *
16181985 C-G-C-CCGTCCG-G-TCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
131 CTGCCACCGTCCGCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * *
16182045 TCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGACTCGGCCGATCCC
196 TCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
* * * * * *
16182110 CGACTTGTGCATCCCGCCCCTCTGGTTGGTTGAG-TAACCGCACGCTCGTTTCGTGGGTTGACTT
261 CGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCT-CCCGCACGCTCGTTTCATGGGTTGACTT
* * *
16182174 AGGCATAC-AGAGTTCATTCCCAGTCTGAGCAAAC-GAAGTTCATTCCCAGTCTAAGATTGAACC
325 AGGCATACGA-AGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATTGGACC
* *
16182237 AGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGTATTTTTCTTCACC
388 AGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACC
* *
16182302 GGGGCACCATCACCGTAGAACCTGACCGGTGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGT
452 GGGGCACCATCACCGCAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGG-
*
16182367 GG-TGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
516 GGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
16182431 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
581 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
16182496 GCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGA
646 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GA
*
16182560 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTTG
710 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTTG
16182625 GCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
775 GCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
16182690 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
840 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
16182736 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACAAAGAAATATGAAGATGT
1 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
*
16182801 GCCTAAACCCACCTACCACCCTATCGATCCACTACTTGCGCATCCCGTCTCTCTGGCTGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC--GCG-A-
16182866 TGCCCGCCTGCCCATCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
127 ---CCGCCTG-CCA-CCGTCCG--CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
*
16182931 CTAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACC
185 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACC
* *
16182996 CGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCAT
250 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCTCCCGCACGCTCGTTTCAT
16183061 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
315 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * *
16183126 ATCGGA-CTGTACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTT
380 ATTGGACCAG-ACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
** *
16183190 TTCTTCACCAAGGCACCATCGCCGGAGCATCGCCGCAGAACCTGACCAGCGGCATTGGGGTT-TC
443 TTCTTCACCGGGGCACCAT--------CA---CCGCAGAACCTGACCGGCGGCATTGGGGTTCT-
* * *
16183254 GACGATCGGGGGGGTCGGGGGGATGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
496 GATGATCGGGGGGGCCGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
16183319 ATATTGGCCCCCTATCTCTCATCAAA-CTCAAGAACTCACACCCCCTTAAAGGGCATTTGAGATT
561 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
16183383 TTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGACACCTTTTTCAAATGGTCAC
626 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
16183448 AAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
691 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
*
16183513 CACATCTACCAAGTTTTTGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCGAACCGCAAA
756 CACGTCTACCAAGTTTTTGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCGAACCGCAAA
16183578 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
821 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
16183643 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
1 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
* *
16183708 GCCTAAACCCACCTACCACCCTATCGATCCACTACTTGCGCATCCCATCTCTCTGGCAGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC--GCG-A-
* *
16183773 TGCCCGCCTGCCCATCCGCCCGCCCGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTC
127 ---CCGCCTG-CCA-CCGTCCG--CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
16183838 CTAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGCACTCAGAGGAGGACC
185 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACC
*
16183903 CGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCTCCCGCACGCTCGTTTCAT
250 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCTCCCGCACGCTCGTTTCAT
*
16183968 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGCGTTCAT
315 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
16184021 GGTGATCGGG
Statistics
Matches: 1963, Mismatches: 151, Indels: 80
0.89 0.07 0.04
Matches are distributed among these distances:
875 3 0.00
876 348 0.18
877 423 0.22
878 3 0.00
879 3 0.00
880 4 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 114 0.06
893 7 0.00
896 4 0.00
897 272 0.14
898 3 0.00
905 2 0.00
907 653 0.33
908 112 0.06
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (885 bp):
AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCGCGACCGC
CTGCCACCGTCCGCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
CGGCTTGCGCATCCCACCCCTCTGGTTGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGA
CCGAGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG
CACCATCACCGCAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGATG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAA
ACTCCTTTCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
Found at i:16183103 original size:26 final size:26
Alignment explanation
Indices: 16183073--16183125 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16183063 GTTGACTTAG
16183073 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16183099 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16183125 G
1 G
16183126 ATCGGACTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16184724 original size:26 final size:26
Alignment explanation
Indices: 16184687--16184739 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184677 GTTGACTTAG
16184687 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16184713 GCATAC-GAAGTTCGTTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16184739 G
1 G
16184740 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16185540 original size:26 final size:26
Alignment explanation
Indices: 16185511--16185615 Score: 147
Period size: 26 Copynumber: 4.0 Consensus size: 26
16185501 GTTGACTTAG
*
16185511 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16185537 GCATACGGAGTTCATTTCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
16185563 GCGTATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16185589 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16185615 G
1 G
16185616 ATCGGACCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16186853 original size:26 final size:25
Alignment explanation
Indices: 16186823--16186874 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16186813 GTTGACTTAG
* * *
16186823 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTACATTCC-AATCTAA
16186849 GCATACGGAGTACATTCCAATCTAA
1 GCATACGGAGTACATTCCAATCTAA
16186874 G
1 G
16186875 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTACATTCCAATCTAA
Found at i:16187656 original size:900 final size:894
Alignment explanation
Indices: 16185689--16187749 Score: 2806
Period size: 900 Copynumber: 2.3 Consensus size: 894
16185679 TTTCTTCGTA
* * * **
16185689 GATCCAAGGCTTGCGCATCCCGTGTCTCTGGCCGGTGTAGTGCCCGCCCGTCCACCAACTCGTTT
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCAACTCGTTT
* * * * *
16185754 CATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAACG-TCAGACCAGACCGATGGTTGT
66 CGTCG-TTGGCTTA-GCATACGGAGTTCATTCCTAGTCTAA-GATCAGACCAGACCGAGGGTTGC
* * * * *
16185818 GG-CAGCAGGGTCGGCAGCACGCAGAGGGGGACCCACTGATCCCCTGCTTATGCATCCCTCCCCT
128 GGTCAGCAGGATCGGCAGCACGCAGAGGGGGACCGACCGATCCCCAGCTTATGCATCCCACCCCT
* * *
16185882 CTGGCCGCCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
193 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAA
* * * * *
16185947 GTCTAAGCATACGGAGTTCATTCCCAAAAGATCGGACTGGACCGAGGGTTCCGACAGCACATGCT
258 GTCTAAGCATACGGAGTACATTCCCAAAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCT
* *
16186012 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCTG
323 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCACCACCGG
* * ** * *
16186077 AGAACCTGATCGGTGGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGCGGGGTGTGCGCACATCA
388 AGAACCTAACCGACGGCATTGGGGTTCCGACAATCGGGGGTGCCGGGCGGGGTGTGCGCACATCA
*** * **
16186142 CGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCTAACCTTGAGAAC
453 CGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
* *
16186207 TCACACCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
518 TCACACCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGA
* **
16186272 AATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
583 AATGGGGAAACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
* * *
16186337 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTATGACCAAAACTCCTTCCGAAA
648 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCCTTCCAAAA
* ** *
16186402 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATTGTGAAAAATAGAAAATGAGTCGTC
713 AAATTTTAAAAAATCCTAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAATGAGTCGTC
*
16186467 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGG
778 TTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGG
* *
16186532 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCAACCACCCTATC
843 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATC
* * *
16186584 GATCCACGACTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTT
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCAACTCGTTT
** ** * * *
16186649 CGTCGGTTGGCTTAAAAGTGTGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGATTGCG
66 CGTC-GTTGGCTTAGCA-TACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * ** * * *
16186714 GT-AGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCAACTTGTGCATCCCACCCAT
129 GTCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGACCGATCCCCAGCTTATGCATCCCACCCCT
* * * *
16186778 CTGGCCGGCTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCTA
193 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAA
*
16186843 GTCTAAGCATACGGAGTACATT-CCAATCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACAT
258 GTCTAAGCATACGGAGTACATTCCCAA---AAGATCAGACCGGACCAAGGGTTACGACAGCACAT
* * ** * *
16186907 GCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCACCAC
320 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCACCAC
* *
16186972 CGGAGAACCTAACCGACGGTATTGGGGTTCCGACAATTGGGGG-GCCGGG-GGGGTGTGCGCACA
385 CGGAGAACCTAACCGACGGCATTGGGGTTCCGACAATCGGGGGTGCCGGGCGGGGTGTGCGCACA
* * * * *
16187035 TGATGCACGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTCCAG
450 TCACGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAG
* * * **
16187100 AACTCGCACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGT
515 AACTCACA-CCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAATAGCCATTAAAGTGT
* *
16187165 CAGGAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAT
579 CAGAAATGGGGAAACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAT
* * **
16187230 TGTTTTGTGCATGGCAACAAAATATACAAGGATCACGTTTACCAAGTTT-GGGGCAAGAACTCCT
644 T-TTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTAGGACCAA-AACTCCT
* *
16187294 TCCAAAAAAATTTTAAAAATTCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATG
706 TCCAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAATG
** *
16187359 AGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGATTATTGTATGAATTTACAAGCCATA
771 AGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTAAGAATTTACAAGCCAT-
* *
16187424 AAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
835 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATC
* **
16187484 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGTCCGTCCACCTGCTCGTTT
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCAACTCGTTT
* * *
16187549 CGTCAGTTGGCCTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGTCCAGACCGAGGGTTACG
66 CGTC-GTTGGCTTA-GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * *
16187614 GTCA-CAGGATCAGCAGCAGGTAGAAGGGGACTCGACCGATCCCCAGCTTATGCATCCCGCCCCT
129 GTCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CGACCGATCCCCAGCTTATGCATCCCACCCCT
** * * * * *
16187678 CTGGCTAGCTAAGCACCCGCACGTTCATTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCAA
193 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAA
16187743 GTCTAAG
258 GTCTAAG
16187750 ATCGAAACGG
Statistics
Matches: 1008, Mismatches: 142, Indels: 27
0.86 0.12 0.02
Matches are distributed among these distances:
894 2 0.00
895 134 0.13
896 181 0.18
897 117 0.12
898 144 0.14
899 151 0.15
900 277 0.27
901 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (894 bp):
GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCAACTCGTTT
CGTCGTTGGCTTAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGT
CAGCAGGATCGGCAGCACGCAGAGGGGGACCGACCGATCCCCAGCTTATGCATCCCACCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTC
TAAGCATACGGAGTACATTCCCAAAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCACCACCGGAGA
ACCTAACCGACGGCATTGGGGTTCCGACAATCGGGGGTGCCGGGCGGGGTGTGCGCACATCACGC
ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCA
CACCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCAGAAAT
GGGGAAACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCTAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATC
Found at i:16189059 original size:26 final size:26
Alignment explanation
Indices: 16189023--16189101 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16189013 GTTGACTTAG
* *
16189023 GCATGCGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16189049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16189075 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16189101 G
1 G
16189102 ATTGGATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16189763 original size:4 final size:4
Alignment explanation
Indices: 16189754--16189784 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
16189744 ACGTAGTGCT
*
16189754 CGCC CGCC CGCC CGCC CGCC CACC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGC
16189785 TCGTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.74, G:0.23, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:16190001 original size:26 final size:26
Alignment explanation
Indices: 16189965--16190065 Score: 193
Period size: 26 Copynumber: 3.9 Consensus size: 26
16189955 GTTGACTTAG
16189965 GCATACGGAGTTCATTCCTAGTCCAA
1 GCATACGGAGTTCATTCCTAGTCCAA
*
16189991 GCATACAGAGTTCATTCCTAGTCCAA
1 GCATACGGAGTTCATTCCTAGTCCAA
16190017 GCATACGGAGTTCATTCCTAGTCCAA
1 GCATACGGAGTTCATTCCTAGTCCAA
16190043 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCCTAGTC
16190066 TAAGATCGGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCCAA
Found at i:16190667 original size:961 final size:948
Alignment explanation
Indices: 16189030--16190931 Score: 2710
Period size: 961 Copynumber: 2.0 Consensus size: 948
16189020 TAGGCATGCG
* *
16189030 GAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATAAGAAGTTCATTCCCA
1 GAGTCCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCCAAGCATAAGAAGTTCATTCCCA
* * *
16189095 GTCTAAGATTGGATCGGACCGAGGGTTGTAGCAGCACATGCTGAGCTCGGGCATGTCCTGGTGTC
66 GTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCACATGCTGAGCTCAGGCATGTCCTGGTGTC
* * * *
16189160 GCTTTTTTCTTCGCACGGGCACCATCACCGGAGTATCACCGGAGAACCTGACCGGCGGCACTGGG
131 GCATTTTTCTTCGCACGGG---C-GCACC---G-ATCACCGGAGAACCTGACCGACAGCACTGGG
* * *
16189225 GTTTCGGCGATCGGGAGGCCCGGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACCTGG
188 GTTACGACGATCGGGAGGCCCGGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACCTAG
* * *
16189290 ATCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAGAGCATTTGA
253 ACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTAAAGAGCATTTGA
* *
16189355 GATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATAGGGACACTTTTCTTCAAATG
318 GATTTTACAGGTTTACTGCCAACAGCCATTAAAGTGTCTGAAATAGGGACACTTTTCTTCAAATG
*
16189420 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
383 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACA
* *
16189485 AGGATCACGTCTACCAAGTTTTGGGCCAAAACGCCTTCCGAAAGAAATTTAAAAACTCCCGAACC
448 AGGATCACGTCTACCAAGTTTTGGGCCAAAACGCCTTCCGAAAGAAATTTAAAAAATCCCAAACC
* ** * *
16189550 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCGAAGAAACTTCACGTGAA
513 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTGAA
* *
16189615 GCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
578 GCCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAA
* * * *
16189680 GATGTGCCTAAACCCACCTGCCACCCTATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
643 GATGTACCTAAACCCACCTACCACCCTATCAACCCACGACTTGCGCATCCCGTCTCTCTGGCCGA
* *
16189745 CGTAGTGCTCGCCCGCCCGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT
708 CGTA--G-T-----GCCCGCCCGCCCGCCCA----CCCGCTCATTTCATCAGTCGGCTTAGGCAT
* *
16189810 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
761 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGATTGCGGCAGCAGGATCGGTAGCAC
* **
16189875 ACAAAGGGGGACCCGCCCGATCCCTGACTTGCGCATC-CAAG-CCCTCTGGCCGGTTGAGCGCCC
826 ACAAAGGGGGACCCGCCCGATCCCCGACTTGCGCATCGC--GCCCCTCTGGCCGACTGAGCGCCC
* *
16189938 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCCAAGCATACA
889 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCTAGTCCAAGCATACA
* * * * * *
16189998 GAGTTCATTCCTAGTCCAAGCATACGGAGTTCATTCCTAGTCCAAGCATACGGAGTTCATTCCTA
1 GAGTCCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCCAAGCATAAGAAGTTCATTCCCA
* *
16190063 GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCT-AGGCTCAGGCATGTGCTGGTG-
66 GTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCACATGCTGA-GCTCAGGCATGTCCTGGTGT
* **
16190126 CTGCATTTTTCTTTGC-CGGG-GCACC-ATCACCGGAGAACCTGACCGACAGCTTTGGGGTTACG
130 C-GCATTTTTCTTCGCACGGGCGCACCGATCACCGGAGAACCTGACCGACAGCACTGGGGTTACG
* * * * * * *
16190188 ACGATC-GGACGGGCTGGGGGGGTGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTAGC
194 ACGATCGGGA-GGCCCGGAGGGGT--GTGT--GCACATGATGTGCGATGGGTGCTAGTACCTAGA
16190252 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
254 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC-TAAAGAGCATTTGA
* * *
16190317 GATTTTACAGGTTTACTGCTAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATG
318 GATTTTACAGGTTTACTGCCAACAGCCATTAAAGTGTCTGAAATAGGGACACTTTTCTTCAAATG
16190381 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACA
383 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACA
* * *
16190446 AGGATCACTTCTACCAAG-TTTGGGACCAAAACTCCTTCTGAAA-AAATTTTAAAAAATCCCAAA
448 AGGATCACGTCTACCAAGTTTTGGG-CCAAAACGCCTTCCGAAAGAAA-TTTAAAAAATCCCAAA
* *
16190509 CCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTG
511 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTG
* *
16190574 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCTATAAAAATGGCATTGGCAGGCAGAAATATG
576 AAGCCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATG
*
16190639 AAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCC
641 AAGATGTACCTAAACCCACCTACCACCCTATCAACCCACGACTTGCGCATCCCGTCTCTCTGGCC
*
16190704 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCAGTCGGCTTAGGCATACAGAGTTCA
706 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCAGTCGGCTTAGGCATACAGAGTTCA
* * * * * * *
16190769 TTCCCAGTCTAAGGTCAGACCGGACTGACGATTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGT
771 TTCCCAGTCTAAGATCAGACCAGACCGACGATTGCGGCAGCAGGATCGGTAGCACACAAAGGGGG
* * * *
16190834 ACCCGGCCGATCCCCGGCTTGTGCATCGCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTT
836 ACCCGCCCGATCCCCGACTTGCGCATCGCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTT
16190899 CGTGGGTTGACTTAGGCATACGGAGTGCATTCC
901 CGTGGGTTGACTTAGGCATACGGAGTGCATTCC
16190932 CAGTGTAAGA
Statistics
Matches: 841, Mismatches: 81, Indels: 43
0.87 0.08 0.04
Matches are distributed among these distances:
948 1 0.00
949 178 0.21
950 1 0.00
953 17 0.02
956 3 0.00
957 47 0.06
958 1 0.00
959 5 0.01
960 9 0.01
961 379 0.45
962 69 0.08
967 6 0.01
968 125 0.15
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (948 bp):
GAGTCCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCCAAGCATAAGAAGTTCATTCCCA
GTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCACATGCTGAGCTCAGGCATGTCCTGGTGTC
GCATTTTTCTTCGCACGGGCGCACCGATCACCGGAGAACCTGACCGACAGCACTGGGGTTACGAC
GATCGGGAGGCCCGGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACCTAGACCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTAAAGAGCATTTGAGATTTTAC
AGGTTTACTGCCAACAGCCATTAAAGTGTCTGAAATAGGGACACTTTTCTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCAC
GTCTACCAAGTTTTGGGCCAAAACGCCTTCCGAAAGAAATTTAAAAAATCCCAAACCGCAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTGAAGCCTTAAG
GGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTACC
TAAACCCACCTACCACCCTATCAACCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCACCCGCTCATTTCATCAGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGACGATTGCGGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGCCCGA
TCCCCGACTTGCGCATCGCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
CTTAGGCATACGGAGTGCATTCCTAGTCCAAGCATACA
Found at i:16191823 original size:26 final size:26
Alignment explanation
Indices: 16191786--16191838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16191776 GTTGACTTAG
*
16191786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
16191812 GCATACGAAGTTCATTCCTAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16191838 G
1 G
16191839 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16192888 original size:413 final size:412
Alignment explanation
Indices: 16192093--16192920 Score: 1320
Period size: 413 Copynumber: 2.0 Consensus size: 412
16192083 TTTTACAGGT
*
16192093 TTGCTGCCAGTAGCCATTAAAGTGTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1 TTGCTGCCAGTAGCCATTAAAGTGTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTG
* * * *
16192158 TACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTAC
66 TACACTTTGAGTTTTTAGCTAAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * * * * * *
16192223 CAAGTTTGGGGTGAAGACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTAAA
131 CAAGTTTGGGGCCAAAACGCCATCCAAAAAAATTGTAAAAAATCCCGAACCACAAAAAGTTTAAA
* * *
16192288 AAATTGTGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
196 AAATTGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACATCAAGGCTTAAGGGACCA
16192353 TTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACC
261 TTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACC
* *
16192418 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
326 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
16192483 ACCCGCCCGCTCATTTCGTCGG
391 ACCCGCCCGCTCATTTCGTCGG
16192505 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTT
*
16192570 GTACACTTCT-AGTTTTTAGCTAAATTTTTTTATGC-TAGCCAACAAAAATACAAGGATCACGTC
65 GTACACTT-TGAGTTTTTAGCTAAATTGTTTTATGCAT-GCCAACAAAAATACAAGGATCACGTC
*
16192633 TACCAAGTTTGGGGCCAAAACGCCATCCGAAAAAATTGTAAAAAATCCCGAACCACAAAAAGTTT
128 TACCAAGTTTGGGGCCAAAACGCCATCCAAAAAAATTGTAAAAAATCCCGAACCACAAAAAGTTT
* * * *
16192698 CAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTGACATCAAGGCTTAAGGGA
193 AAAAAATTGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACATCAAGGCTTAAGGGA
16192763 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCC-TGCAGAAATATGAAGATGTGCCTA
258 CCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCCATGCAGAAATATGAAGATGTGCCTA
* * *
16192827 AACCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCTC
322 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
16192892 GCCCGCCTGCCCGCTCGTTTTGTCGG
387 GCCCACCCGCCCGCTCATTTCGTCGG
16192918 TTG
1 TTG
16192921 GCTTAGGCAT
Statistics
Matches: 381, Mismatches: 31, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
412 25 0.07
413 352 0.92
414 4 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (412 bp):
TTGCTGCCAGTAGCCATTAAAGTGTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTG
TACACTTTGAGTTTTTAGCTAAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACGCCATCCAAAAAAATTGTAAAAAATCCCGAACCACAAAAAGTTTAAA
AAATTGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACATCAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
ACCCGCCCGCTCATTTCGTCGG
Found at i:16193122 original size:26 final size:26
Alignment explanation
Indices: 16193086--16193138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16193076 GTTGACTTAG
16193086 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16193112 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16193138 G
1 G
16193139 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16194022 original size:26 final size:26
Alignment explanation
Indices: 16193987--16194036 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16193977 GACTTAGGCG
16193987 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* * *
16194013 TACGGTGTTCATTCTCGGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16194037 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:16194924 original size:26 final size:26
Alignment explanation
Indices: 16194887--16194939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16194877 GTCGACTTAG
16194887 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16194913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16194939 G
1 G
16194940 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16195294 original size:902 final size:903
Alignment explanation
Indices: 16192505--16200654 Score: 10406
Period size: 903 Copynumber: 9.1 Consensus size: 903
16192495 ATTTCGTCGG
* *
16192505 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16192570 GTACACTTCTAGTTTTTAGCTAAATTTTTTTATGC-TAGCCAACAAAAATACAAGGATCACGTCT
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCT
* * * * **
16192634 ACCAAGTTTGGGGCCAAAACGCCATCCGAAAAAATTGTAAAAAATCCCGAACCACAAAAAGTTTC
130 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* * * * *
16192699 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTGACATCAAGGCTTAAGGGAC
195 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16192764 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CTGCAGAAATATGAAGATGTGCCTAA
260 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GTAGAAATATGAAGATGTGCCTAA
* *
16192828 ACCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCTGACGTAGT----G
324 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * *
16192889 CTCGCCCGCCTGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
389 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * ** * * * * *
16192954 ATCGGACCGAAACGATGGTTGAC-ATAGCAAGATTGATAGCATC-CAGAGGGGGACCTGGCCGAT
454 ATCAGACC-AGCCGAGGGTTG-CGGCAGCAGGATCGGTAGCA-CGCAGAGGGGGACCCGGTCGAT
* * *
16193017 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
516 CCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
16193082 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
581 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
16193147 AGACCAAGGGTTACGGCAGCACATACTGGGCTCCGGCATGTGCTAGTGCTACGTTTTTCTTCGTC
646 AGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
* *
16193212 GGGTCACCATCATCGGAGCATCGCCGGAGAACGTGACCGGCGGCATTGGGGTTCCGACGATCGGG
711 GGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * * *
16193277 GGGGCC-GAGGGGTGTG-GCACATGATGTTC-AGTGGGTGCTGGTAGTTTGCCCTTATATTGGCC
776 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
16193339 TCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
840 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
16193403 TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16193468 GTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * *
16193533 CCAAGTTTGGGACCAAAAAACCTTCCGAAAAAATGTTAAAAAATCCCGAACCGTAAAAAGTTTCA
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* *
16193598 AAAATCGTGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
16193663 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
16193728 CCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGT----GCC
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * *
16193789 CGTCCACCCGCCCGCT-ATATTCGTCAGTTGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGA
391 CGCCCGCCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * *
16193853 TC-GAACCGGACTGAGGGTTGCCACAGTAGGATCAGCAGCACGCAGAGGGGGACCCGGTCGATCC
455 TCAG-ACCAG-CCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCC
* * *
16193917 TCGGCTTGCGCATCCCACCCCTCTGGCCAGG-TGAGCGCCCGTACGCTCGTTTCATGGGTTGACT
518 TCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
16193981 TAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTCTCGGTCTAAGATCAGACCG
582 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * *
16194046 GACCGAGGGTTTTCGGTAGCA-ATTGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGT
647 GACCGAGGG-TTACGGCAGCACA-TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
* * * *
16194110 CGGGGCACCATCGTCGGAACATCGCCGAAGAACCT-AGCCGTCGGCATTGGGGTTCCGACGATCG
710 CGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATCG
*
16194174 GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
774 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
16194239 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
839 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
16194304 TTGTTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTTAATTGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16194369 GTACACTTCGAGTTTTAAGCTGAATTTTTTTATGCATGCCAACAATAATACAAGGATCACGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * *
16194434 TGAAGTTTGGGGCCAAAACTCCTTCCGAAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTCG
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* * *
16194499 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
16194564 ATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* ** * *
16194629 CCACCTAACACCCTATCGATCCACGGCCCGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
16194694 C-CCCGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCTTTCCCAGTCTAAGAT
391 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
16194758 CAGACCAGCCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCG
456 CAGACCAGCCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCTCG
* * * *
16194823 GCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTCGACTTAGG
521 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
16194888 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
586 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * *
16194953 GACGGTTGCGACAGCACATGCTGGGCAT-GGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGG
651 GAGGGTTACGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * *
16195017 CACCATCA-CTGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGG
715 CACCATCATC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
*
16195081 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCC
778 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** *
16195145 TATTGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
843 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
16195206 TTGCTGCCCGTAGCCATTAAAGTGTTTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCAT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
**
16195271 GTACACTTTTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * ** * * * *
16195336 CTAGGTTTAGGGTGAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTAAACTGTAAAAAGTTTCA
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* *
16195401 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16195466 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GATAGAAATATGAAGATGTGCCTAAG
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAA
* * * *
16195530 CCCACCTACCACCCTATCGATCCACGGCTTCCGTATCCCGTCTCTCTGACCGGCGTAGTGCCCGC
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * *
16195595 CCACCCACCCTCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGA
390 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * * * * * * * *
16195660 TCAGACTGGATGAAGGGTTGTGGTAGCAGGATTGGTAGCACGCAAAGAGGGACCCAGCCAAT-CT
455 TCAGACCAGCCG-AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCT
* * * * *
16195724 CCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTAACTT
519 -CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
16195789 AGGCATACGGAGTTCATTTCCAGTCTAAGCA-ACAGATTTCATTCCAAGTCTAAGATCGAACCAG
583 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * **
16195853 ACCGAGGGTTACGGTAGCACATGCTGGGCTCGGG-ATGTGCTGGTGCCGCATTCTTCTTCACCGG
648 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * *
16195917 GGCA-CATCATCGGAGCATCGTCAGAGAACCTGACGGGCGGCATTGGGATTCCGACGATCGAGGG
713 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* *
16195981 GGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT-G-----GGCCCTTATATTGGCCCCC
778 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
**
16196040 TATCCCTCATCAAACCTTTAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTACAGGT
843 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGT
* * *
16196101 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAGATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * ** *
16196166 GTACACTTCGATTTTTTAGCTGAATTTTTTTATGCACACCAACAAAAATACAAGGATCATGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * ** * *
16196231 CCAAGTCTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCCAACCGCAAAATGTTTCA
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* * * *
16196296 AAAATCATGAAAAATAGAAAACAAGTAGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16196361 ATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACGTAGAAATATGAAGATGTGCCTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
16196426 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGGAGTGCCCGCC
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
** * *
16196491 CATCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
391 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** ** *
16196556 CAGACCGGATCGAGGGTTGCAGCAGCAGGATTGACAGCACATAGAAGGGGACCCGGTCGATCCTC
456 CAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCTC
* * *
16196621 GGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAGTTAG
520 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16196686 GCATACGAAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GATC-G----GAC
585 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
16196725 CGAGGGCTATGGCAGCACATGCTTGACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGAG
650 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGG
* * * * ** * * * *
16196789 GCACCATCGTCGGAGCATCGCTGGAGAACCTAACCGGCAGTTTTGAGGTTGCGGCGATCGGGTGG
714 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
16196854 GCCGGGGGGGCGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCAT
779 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
16196919 ATCCTTCATCAAACCTCTAGAACTCACACCGCTTTAAAGAGCATTTGAGATTTTACAGGT
844 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16196979 TTGCTGCCAGTAACTATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
16197044 GTACACGTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
66 GTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * *
16197108 ACCAAGTTTGGGGCCAAAACAACTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTT
130 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* *
16197173 GAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
195 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
16197238 CATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGATGGTGTGCCTAAA
260 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* **
16197303 ACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTAC
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * *
16197368 CCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTTAAGCAGACGGAGTTCATTCCCAGTCTAAGA
390 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** *
16197433 TC-GAACCAAATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCC
455 TCAG-ACC-AGCCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCC
* * * * * * * *
16197497 CCTGCTTGTGCATCTCGCCCCTCTGGCCAGTTGAGCGCCCGTAGGCTCGTTTCGTGGGTTGACTT
518 TCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
16197562 AGGCATATGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGG
583 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* *
16197627 ACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGG
648 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * *
16197692 GGCACCATCGTCAGAGCATCGTCGGAGAACC--ACCGGCGGCATTAGGGTTCCGGCGATCGGGGG
713 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* *
16197755 GGCCGGAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCC
778 GGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16197820 CTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGT
842 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16197882 TTCCTGCCAGTAGCCATTAAAGTGTCTGATATGGGGACACTTATTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16197947 TTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
16198012 CCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTT
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTC
*
16198076 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
195 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* ** * * * *
16198141 CATTGTATTAATTTACAAGCCATAAAAATCACATTGGCATGCAGAAATATGATGGTGTGCCTAAA
260 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * * * *
16198206 ACCACCAACCACCGTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGC
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-
* * * *
16198271 CCATCCGCCCGCCCTCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCA
389 -C--CCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
16198336 ATCTAAGATTAGACCAAACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGG
447 GTCTAAGATCAGACC-AGCCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGG
* * * ** * * *
16198401 TCGATCCCCGACTTGCGCATCTCGTTCCTCTGGCCGACTGAGCGCCCGTACGCTCATTTCGTGGG
511 TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
16198466 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G----A-AT-
576 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** *
16198514 ---------TGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCT
641 GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * *
16198570 TCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACC--ACCGACAGCATTGGGGTTCCGACGA
706 TCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* ** * * *
16198633 TC-GGGGGGTCGAAAGGGGTGTACGCACATGATGTGCGATGGGCGCTGGTACTTGGCTCTTATAT
771 TCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
16198697 TGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
835 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
16198762 AGGT
900 AGGT
* * *
16198766 TTGCTGCCAGTAGCAATTAAAGTGTCTGATATGGGGACACTTATTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16198831 GTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * * *
16198896 CGAAGTTTGGGGCAAAAACTCCGTCCGAAAAAATTCTAAAAAATCCCGAACCTTAAAAAGTTTTA
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* *
16198961 AAAATCGTTAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
16199026 ATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCGTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * ** * * * * * * * *
16199091 TCTCCTACCACTTTATTGATCGACGGCTTGCACAT-CCGTCTTTTTGGCCGGCTTAGTGCCCGCT
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* *
16199155 CGCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
391 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * *
16199220 CAGACCAGATCAAGGGTTGCTACAGCAGGATCGGTAGCACGTAGAGAGGGACTCGGTCGATCC-C
456 CAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCTC
* * *
16199284 AGGCTTGCGCATCCCGCCCTTCTGGCCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGAC-T-
520 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
** *
16199347 ----TA--G-G--CA-T---A--C---G-A-A---A-TTCATTCCCAGTCTAAGATTAGACCGGA
584 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * ** **
16199388 CCGAGGGTTACTGTAGGACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGG
649 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
16199453 G---CATCATC---G--T---CGGAGAACCTGA-CGGCGGCATTGGGGTTCCGACGATCGGGGGG
714 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
*
16199506 GCC-GGGGGGTGTGCGCACATGATGT-CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
779 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16199569 ATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
844 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
16199629 TTGCTGTCAGTAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16199694 GTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * * * *
16199758 CCAAGTTTGGTTCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTCAAACTGCAAAAAGTTTT
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTC
* * *
16199822 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGTGAC
195 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
16199887 CAATGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
260 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * *
16199952 CCCACCTACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCAC
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * *
16200017 CCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCTGTCTAAGA
390 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** *
16200082 TTAAACCAGACCGAGGGTTACGGTAGCAGGATC-G-A-CA-G-A-A-GGGGACCCGACCGATTCT
455 TCAGACCAG-CCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCT
* * * * * * *
16200140 CGGCTTGCACATCCCACCCCTTTGGCCGGCTGAACGCCCGTATGCTCGATTT-ATGGGTTGACTT
519 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTT
* * * *
16200204 AGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCGGATCGG
583 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
** * * * ***
16200269 ACCGAGGGTTGTGGCAGCACATGCTGCGCTCGAGCATGTGCTGGTGCCTCATTTTTCTTTACCGG
648 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * ** * * * *
16200334 GGCACCATCATCGGAGCATCGTCAGAGAACCTGACGGGCAACATTTGGGTTTCGATGATCGGTGG
713 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * * *
16200399 GACCGAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATACTGGCCCC
778 GGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16200464 TTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
842 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
16200526 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
16200591 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCT
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
16200655 CTCTGGCCGG
Statistics
Matches: 6360, Mismatches: 725, Indels: 334
0.86 0.10 0.05
Matches are distributed among these distances:
855 2 0.00
856 60 0.01
857 6 0.00
858 2 0.00
859 3 0.00
860 4 0.00
861 2 0.00
862 223 0.04
863 300 0.05
864 32 0.01
865 26 0.00
866 9 0.00
867 4 0.00
868 1 0.00
869 3 0.00
870 31 0.00
871 30 0.00
872 88 0.01
873 2 0.00
874 3 0.00
875 211 0.03
876 1 0.00
877 1 0.00
878 604 0.09
879 11 0.00
880 2 0.00
881 2 0.00
882 80 0.01
883 26 0.00
884 452 0.07
885 119 0.02
887 3 0.00
888 1 0.00
890 4 0.00
891 1 0.00
893 13 0.00
894 33 0.01
895 600 0.09
896 26 0.00
897 199 0.03
898 595 0.09
899 112 0.02
900 20 0.00
901 531 0.08
902 627 0.10
903 771 0.12
904 273 0.04
905 7 0.00
907 7 0.00
909 1 0.00
910 2 0.00
911 193 0.03
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGCCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCTCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
ACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
Found at i:16201769 original size:26 final size:26
Alignment explanation
Indices: 16201738--16201790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201728 GTTGACTTAG
*
16201738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16201764 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16201790 G
1 G
16201791 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16203527 original size:26 final size:26
Alignment explanation
Indices: 16203497--16203549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16203487 GTTGACTTAG
16203497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16203523 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16203549 G
1 G
16203550 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16204423 original size:26 final size:26
Alignment explanation
Indices: 16204393--16204445 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16204383 GTTGACTTAG
*
16204393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16204419 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16204445 G
1 G
16204446 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16204442 original size:896 final size:894
Alignment explanation
Indices: 16202627--16207530 Score: 6632
Period size: 888 Copynumber: 5.5 Consensus size: 894
16202617 GTTGACTTAG
* * * *
16202627 GCATAGGGAGTTCATTCCCAGTCTAA-ATCGGACCGGACCGAGGGTTGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
16202691 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCGGGGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCGCGA-AGCATCGTCGGAGA
*
16202756 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16202820 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16202885 -CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16202949 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16203014 GCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCATCCGAAAAA
389 GCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
16203078 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
16203143 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16203208 TTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16203273 CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
16203338 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* **** * * * * * * *
16203403 GGAGGTGGAAGGGGAGCCGACCGATCCCAGGCTTGCGCTTCCTGCCCCTTTGGCCAGCTGAGCGC
775 GCACACAGAGGGGGACCCGATCGATCCCAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
*
16203468 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16203523 GCATACGGGGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** *
16203588 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAACACCATCGACGAAGCATCACCGAAGAA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCACCATCG-CGAAGCATCGTCGGAGAA
* ** *
16203653 CCTAACCGTTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGTGC
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGC
* *
16203718 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACTTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
16203783 -CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAACCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16203847 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * * *
16203912 TGCACGCCAAAAAAAAAT-CAAGGATTACATCTACCAAGTTTGGGGGCCAAAACTCCTTCCAAAA
388 TGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAA
* * * * *
16203976 AAATCTTAAAAAATCCTGAACCGCAAAAATTTTTGAAAATCATGAAAAATGGAAAACAAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
16204041 TTGCGATGAAACTTCGCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAGGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16204106 CATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTG
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16204171 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
16204236 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATTGGCAAC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
16204301 ATACAGAGGGGGACCCGGTCAATCCCTGACTTGCGCATCCTGCGCATCTGGCCGGCTGAGCGCCC
777 ACACAGAGGGGGACCCGATCGATCCCAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
16204366 GGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16204419 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
16204484 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATC-GCGAAGCATCGTCGGAGA
* * * * * * *
16204549 ACCTCACCAGCGTCATTGGGGATCCGGCGATCGGGGGGGCAGGGGGGTGTGCGCATATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16204614 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAATTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16204679 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16204744 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGC
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
16204809 GCATGCC-AAAAAAAATTCAAGGATCACGTCTACCAACTTTCGGGCCAAAACTCTTTCTGAAAAA
389 GCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * ** *
16204873 ATTTAAAAAAATATCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16204938 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGGATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16205003 TTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCA
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
16205068 CATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
16205129 ACGGAATTCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGCGGCAGCACGATAGGCAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * *
16205194 GCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCTG
779 ACAGAGGGGGACCCGATCGATCC-CAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
*
16205258 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** **
16205310 GCATATGGAGTTCTTTCCCAGTCTAAGATCAGA-TCGGATAGAGGGTTATGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
16205374 GCTCGGGCATGTGCTAGTACCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGAAA
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACC-GGGCACCATCGCGA-AGCATCGTCGGAG
* * * * *
16205439 AACCTGACTGTCGGCATTGGGGTTCCGATGATCGGGGGGGGCGGGGAGGGTGCGCGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGG-GGGTGTGCGCACATGATG
* * * * *
16205504 TGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCTCCTATCCCTTATCAAACCTCGAGAACTA
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16205569 AAACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16205634 ATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16205699 TATGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAA
386 TGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
16205763 AAAATTTTAAAAAATCCCGAACTG-AAAAAGGTTTGAAAATCACGAAAAATAGAAAAAGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
16205827 TTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTGCAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
16205892 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACAT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16205957 GCGCATCCCATCTCTCTGGCCGACGTA--G--T----GCCCGCTCGTTTCATCGGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
16206014 CATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGACTGAGAGTTACGGCAGTAGGATCGACAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** *
16206079 CACATAGAGGGATACCTGATCGATCTCCAG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
776 CACACAGAGGGGGACCCGATCGATC-CCAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
16206143 CCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGCTCATTCCCTA-TCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAA
* *
16206198 GCATACAGAGTTCATTGCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** **
16206263 ATCGAGCAAGTGTTGGCGCTACATTTTTCTTCATTGGGGCACCATCGCTGAAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCA-CCGGGCACCATCGC-GAAGCATCGTCGGAGA
*
16206328 ACATGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
16206393 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16206458 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTTAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16206523 GGGGACACTTTTTTCAAATGGTCAAAAAATCTGGTACATTTCGAGTTTTTAGCTTAATTTTTTAT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-T
* * * * *
16206588 G-GCATG-CGAACAAAAATACAGGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAA
387 GTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*** * * *
16206651 AAATTTTAAAAAATCCCGAACTATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGCCATC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
16206716 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16206781 CATTGGCACGTAAAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATTCAGGGCTTG
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16206846 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCGGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTT
* * * * *
16206911 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATC-GAACCGAGGGTTACGGCAGCAAGATCG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
16206975 ACAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGC-CATCCCGCCCCTCTGGCCGGCTAAG
772 GCAGCACACAGAGGGGGACCCGATCGATCCCAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * **
16207039 TGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTGAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** ** * *
16207097 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATTAAGGGTTATGACAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
16207161 GCTCAAACATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACC-GGGCACCATCG-CGAAGCATCGTCGGAG
* ** * *
16207226 AACCTGACCGACGGCATTGGGGTTTTGACGATCGGGGGGGTCGGGGTGGGTGGTGTGCGCATATG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C--CG-GGG-GGTGTGCGCACATG
* *
16207291 ATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
188 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
16207356 CTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAATAGCCATTAAAGTGT-T
253 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16207420 CGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
318 -GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
16207485 TTTTTGTGCATGCC-AACAAAAATAAAAGGATCACGGCCACCAAGTT
382 TTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTT
16207531 CCAAGGATTA
Statistics
Matches: 3518, Mismatches: 437, Indels: 99
0.87 0.11 0.02
Matches are distributed among these distances:
886 1 0.00
887 278 0.08
888 490 0.14
889 5 0.00
890 3 0.00
891 320 0.09
892 189 0.05
893 271 0.08
895 223 0.06
896 460 0.13
897 254 0.07
898 197 0.06
899 246 0.07
900 347 0.10
901 1 0.00
902 6 0.00
903 226 0.06
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCACCATCGCGAAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACAC
AGAGGGGGACCCGATCGATCCCAGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16205320 original size:26 final size:26
Alignment explanation
Indices: 16205284--16205336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16205274 GTTGACTTAG
16205284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16205310 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16205336 G
1 G
16205337 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16207107 original size:26 final size:26
Alignment explanation
Indices: 16207071--16207123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16207061 GTTGACTTAG
**
16207071 GCATACGGAGTTCATTCTGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16207097 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16207123 G
1 G
16207124 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16207681 original size:26 final size:26
Alignment explanation
Indices: 16207652--16207704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16207642 GTTTACTTAG
* * *
16207652 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16207678 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16207704 G
1 G
16207705 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16208058 original size:580 final size:580
Alignment explanation
Indices: 16206958--16208110 Score: 1580
Period size: 580 Copynumber: 2.0 Consensus size: 580
16206948 GAACCGAGGG
* * * *
16206958 TTACGGCAGCAAGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCCATCCCGCC
1 TTACGGCAGCAAGATCGACAACACACAGAGGGGGACCCGATCAATCCCCGACATGCCATCCCGCC
* *
16207023 CCTCTGGCCGGCTAAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
66 CCTCTGGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
** ** * * **
16207088 TGAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATTAAGGGTTATGACAGCA
131 CCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTATGACAGCA
* * * *
16207153 CAAGCTGGGCTCAAACATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT
196 CAAGCTGGGCACAAACATGTGCTGGTGCCACATTTTTCTTCACCGGGGAACCATCGCCGGAGCAT
** * * *
16207218 CGTCGGAGAACCTGACCGACGGCATTGGGGTTTTGACGATCGGGGGGGTCGGGGTGGGTGGTGTG
261 CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCGCCGGGGTGGGTGGTGTA
* *
16207283 CGCATATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
326 CGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAAC
* * * * *
16207348 CTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAATAGCCATTA
391 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCACTA
* * *
16207413 AAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
456 AAGTGTTCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAG
* *
16207478 CTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGGCCACCAAGTTCCAAGGA
521 CTGAATTGTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGGCCACCAAGTTCCAAGGA
* * * **
16207538 TTACGGCAGCAGGATCGACAACATACAGAGTGGGACCCGATCAATCCTTGACATGCGCATCCCGC
1 TTACGGCAGCAAGATCGACAACACACAGAGGGGGACCCGATCAATCCCCGACATGC-CATCCCGC
* * * ** * *
16207603 CCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTTACTTAGGCATACGGAGTTTATT
65 CCCTCTGGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* *
16207668 CCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGG-T-TGCAGCA
130 CCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTATG-A-CA
* * * * **
16207731 GCACATGCTGGG-ACGAGCATGTGCTGGTGCCACATTTTTGTTCGTCGGGGAACCATCGCCGGAG
193 GCACAAGCTGGGCACAAACATGTGCTGGTGCCACATTTTTCTTCACCGGGGAACCATCGCCGGAG
* * ** *
16207795 CATCGTCGGAGTACCTGACCGACGGTATTGGGGTTCCGGTGATTGGGGGCGCCGAGGG-GGG-GG
258 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCGCCG-GGGTGGGTGG
* * *
16207858 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATGTTGGCCCCCTACCCCTCATC
322 TGTACGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATC
* * *
16207923 AAACCTCGAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGC
387 AAACCTCAAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGC
*
16207988 CACTAAAGTG-TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACTCTTCGAGT
451 CACTAAAGTGTTC-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGT
* * *
16208052 TTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
515 TTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGGCCACCAAGTT
16208111 TGGGGCTAAA
Statistics
Matches: 497, Mismatches: 70, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
579 89 0.18
580 283 0.57
581 125 0.25
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (580 bp):
TTACGGCAGCAAGATCGACAACACACAGAGGGGGACCCGATCAATCCCCGACATGCCATCCCGCC
CCTCTGGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTATGACAGCA
CAAGCTGGGCACAAACATGTGCTGGTGCCACATTTTTCTTCACCGGGGAACCATCGCCGGAGCAT
CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCGCCGGGGTGGGTGGTGTA
CGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCACTA
AAGTGTTCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAG
CTGAATTGTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGGCCACCAAGTTCCAAGGA
Found at i:16208572 original size:26 final size:26
Alignment explanation
Indices: 16208543--16208595 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16208533 GTTGACTTAG
16208543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16208569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16208595 G
1 G
16208596 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16209284 original size:885 final size:887
Alignment explanation
Indices: 16207595--16212889 Score: 6759
Period size: 885 Copynumber: 5.9 Consensus size: 887
16207585 TTGACATGCG
* ** * * *
16207595 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTTACTTAGGCATACGG
1 CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
16207660 AGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* * * * * *
16207725 GCAGCAGCACATGCTGGG-ACGAGCATGTGCTGGTGCCACATTTTTGTTCGTCGGGGAACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * ** ** *
16207789 CCGGAGCATCGTCGGAGTACCTGACCGACGGTATTGGGGTTCCGGTGATTGGGGGCGCCGAGGGG
196 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGG-G-C---TGG
* * * *
16207854 GGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATGTTGGCCCCCTACCCCT
256 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
16207919 CATCAAACCTCGAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAG
321 CATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
16207984 TAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACTCTTCG
385 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
16208049 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
450 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
16208114 GGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGA
515 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
16208179 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGACTTAAGGGACTATTGTATGAA
580 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
16208244 TTTACTAGCCTTAAAAATGGCAATGGCGCGCAGAAATATGAAGATGTTCCTAAACCCACCTACCA
645 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
16208309 CCCTATCGATCTATGGCTTGCGCATACAGTCTCTCTGGCC-AGCGTAGAGCCCGCACGCCCGCCC
710 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGA-CGTAGAGCCCGCCCGCCCGCCC
** * * * * *
16208373 ATTTGTTTCGTCGGA-TCGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTG
774 GCTCGTTTCGTC-GATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* *
16208437 AGGGTTACGATAGCGTTCAGAGGGGGACCCGA-CAGATCCCCGGCTTGCA
838 AGGGTTACGGTAGCGTACAGAGGGGGACCCGACCAGATCCCCGGCTTGCA
* * * *
16208486 CATCCCGCCCCTCTGGCCGAATGAGCGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGG
1 CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ***
16208551 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATAAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* ** * * *
16208616 ACGATAGCACATGCTGGGCTCGGGCATGTGCTCGTGCCGCATATTTCTTCGTCGGGGCACCATTG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* *
16208681 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCAACGATCAAGGGGGCTGGGGGG
196 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCTGGGGGG
16208746 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
260 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
16208811 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCC
325 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
16208876 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
390 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * **
16208941 TTAGTTGAA-TTTTTT-TGCATGCCAAAAAAAATACAAGGATCACCTCTATTAAGTTTGGGGCCA
455 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
16209004 AAACTCCTTCCGAAAAAATTTGAAAAAATTCGGAACAGCAAAAAGTTTCAAAAATCATGAAAAAT
520 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* *
16209069 CGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
585 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
16209134 AAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTA
650 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
16209199 TCGATCCACGGCTTGTGCATCCCGTCTCTTTGACCGACGTA-ATGCCTGCCCGCCCGTCCGCTCG
715 TCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGA-GCCCGCCCGCCCGCCCGCTCG
* * * **
16209263 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-GAACCAAGGGT
779 TTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGT
** * *
16209327 TACGGT-GCAGGATCGACAGCACACAGAGGTGGA-TTGAGCCA-ATCCCTGGCTTGCG
843 TACGGTAGC--G-T--ACAG-----AG-GG-GGACCCGA-CCAGATCCCCGGCTTGCA
* * * * *
16209382 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACATAGGCAAATGG
1 CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
16209447 AGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTATGATCGGATCAGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
** * * ** ** *
16209512 GCGGCAGCGTATGCTGGACTCGGGCATGTGCTCGTGCCATATTTTTCTTCACCGAGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** * * *
16209577 TC---G-A-------AGAACCTGACCTG-CAGCATTGGGGTTTTGGCGATCGGGGGGGTCGGGAG
196 TCGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATC-AGGGGG-CTGG-G
16209630 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
257 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16209695 ATCAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
322 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
16209760 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTCTACACTTCGAG
387 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
16209825 TTTTTAGTTGAATTTTTTTATGCATGCCAAAAAAAA-AGAAGGATCACGTCTACCAAGTTTGGGG
452 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * **
16209889 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCATGAAA
517 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
16209954 AATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATT
582 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * ** *
16210019 TACAAGCCTTAAAAATGACATTGGCATGTGGAAATATGAAGATGTGCCAAAACCCACCTACCACC
647 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** * * * * **
16210084 CTATCGATCCACGGCTTGTGCATCCCGTCTCTCTTGTTGGCGT--TG--TGCCCACCCGCCCATT
712 CTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCT
* * * * * * * **
16210145 CATTTCGTCGGTTGGCTTACGAATTC-GAAGTTCACTCCCAGTTTAAGATCAGACCAGACCAAGG
777 CGTTTCGTCGATTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * **
16210209 GTTATGGTAGCAGGATCAGTAGCACACAGAGTGGGACCCGATC-GATCCTCGGCTTGGG
841 GTTACGGT---A-G--C-GT-----ACAGAGGGGGACCCGACCAGATCCCCGGCTTGCA
** * * * * *
16210267 CATCTTGCCCCTCTAGTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGG
1 CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * * *
16210332 AGTTCATTCCCAGTCTAAGCATGTAGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* * ** ** * *
16210397 GCGGCAGCACATGCTAGGCTCAGGCATGTATTGGTGTTGTATTTTTCTTTGTCGGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* *
16210462 TCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCTCG-CGATCGAGGGGGCCGGGGG
196 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC-CGACGATC-AGGGGGCTGGGGG
* * **
16210526 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCGATCAT
259 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
16210591 CAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGC
324 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * *
16210656 TATTAAAATGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTT
389 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** * *
16210721 TTTAGCTGAATTTTTTTGGGGGTGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
454 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * ** *
16210786 TAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTTAAAAGTTTCAAAAATCGTGAAAAA
519 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
16210851 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
584 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
16210916 CAAGCCATAAAAATGGCGATTGGCACACAGAAATATGAAGATGTGCC-AAACCCACCTAGCCACC
649 CAAGCCATAAAAATGGC-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACC
* *
16210980 CTATCGATCCATGGCTTGTAGGCATCCTCGT-TCTCTGGCCGGCGTAGAGCCCGCCCGCCCGCCC
712 CTATCGATCCACGGCTTGT--GCATCC-CGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCC
* * * * **
16211044 GCTTGTTTCGTC-AGTTGGCCTTAGGCATACAGCGTTCACTCCCCAGTCGAAGATTGGACCAGAC
774 GCTCGTTTCGTCGA-TTGG-CTTAGGCATACAGAGTTCA-TTCCCAGTCTAAGATCAGACCAGAC
* * * * *
16211108 TGATGGTTACGGACAGGCCATGCAGA-GGGGACCCCGACCGGATCCCCGGCTTGCA
836 TGAGGGTTACGG-TA-G-CGTACAGAGGGGGA-CCCGACCAGATCCCCGGCTTGCA
* * *
16211163 CATCCCGGCCCCCTCTATCCCAGTGAGCGCCCAG-ACGCTCGTTTCCGTGGG-TGACTTAGGCAT
1 CATCCC-G-CCCCTCTAGCCGACTGAGCGCCC-GCACGCTCGTTT-CGTGGGTTGACTTAGGCAT
**
16211226 ACGGAGTTTCATTCCCAGTCTAGAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGGATTGGACC
62 ACGGAG-TTCATTCCCAGTCTA-AGCATACAGAGTTCATTCCCAGTCTAAGATC-GGATCAGACC
*
16211290 TGAGGGTTACCGGCAG-ACATGCTGGGCTCGTGG-ATTGTGGCTGGTGCCCGCA-TTTTCTTTCG
124 -GAGGGTT-GCGGCAGCACATGCTGGGCTCG-GGCA-TGT-GCTGGTG-CCGCATTTTTC-TTCG
* *
16211352 TCGGGGGCACCATCATCGGAGCATTGTTCGGAGAACCTGACCGACGGCATT-GGGTTCCGACGAT
182 TC-GGGGCACCATCGTCGGAGCATCG-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
16211416 CAGGGGG-TCGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
245 CAGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16211480 CCCCTATCCCTCATCAAGCCTTGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGT
310 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16211544 TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAACGATCACAAAATCTT
375 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** ** *
16211608 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCATCAAAAATACAAAAATCACATCTA
440 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
16211673 CCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCG
505 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
16211738 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
570 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16211803 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCAAAAC
635 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * *
16211868 CCACCTAGCACCCTATCGATCCATGGCTTGAGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCGCC
700 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCC
* * * * **
16211933 CG-CCACCCGCTTGTTTCGTC-AGTTGGCTTAGGCATACAGCGTTCACTCCCAGTCTAAGATTGG
765 CGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * *
16211996 ACCAGACTGAGGGTTATGGCAGCATACAGAGGGGGACCCGACC-GATCCCCGGCTTGCA
829 ACCAGACTGAGGGTTACGGTAGCGTACAGAGGGGGACCCGACCAGATCCCCGGCTTGCA
* *
16212054 CATCCCGCCCCTCTATCC-AGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 CATCCCGCCCCTCTAGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* **
16212118 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGT
65 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT
16212183 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
130 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
16212248 ATCGGAGCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGG
195 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCT-GGGGG
* *
16212313 GTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
259 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
16212378 CAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGC
324 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
16212443 CATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTT
389 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** ** * *
16212507 TTTAGCTGAATTTTTTTGTGCATACCATCAAAAATACAAAAATCACATCTTCCAAGTTTGGGGCC
454 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
16212572 AAAAAC-CCTTCCGAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
519 -AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
16212636 ATAGAAAACAAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
583 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
16212701 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCT
648 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16212766 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATTCGCTC
713 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCG-CC---CGCCC
* * * * * * *
16212831 GCTCATTTCATCGGTTGGGTTACGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCA
774 GCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
16212890 TACCAAGGGT
Statistics
Matches: 3883, Mismatches: 414, Indels: 215
0.86 0.09 0.05
Matches are distributed among these distances:
881 24 0.01
882 43 0.01
883 13 0.00
884 183 0.05
885 945 0.24
886 42 0.01
887 328 0.08
888 380 0.10
889 70 0.02
890 51 0.01
891 152 0.04
892 100 0.03
893 11 0.00
894 220 0.06
895 222 0.06
896 304 0.08
897 30 0.01
898 92 0.02
899 47 0.01
900 63 0.02
901 260 0.07
902 96 0.02
903 109 0.03
904 43 0.01
905 32 0.01
906 23 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCTGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTCGTT
TCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
GGTAGCGTACAGAGGGGGACCCGACCAGATCCCCGGCTTGCA
Found at i:16211265 original size:26 final size:28
Alignment explanation
Indices: 16211222--16211273 Score: 90
Period size: 26 Copynumber: 1.9 Consensus size: 28
16211212 GGTGACTTAG
16211222 GCATACGGAGTTTCATTCCCAGTCTAGA
1 GCATACGGAGTTTCATTCCCAGTCTAGA
16211250 GCATAC-GAG-TTCATTCCCAGTCTA
1 GCATACGGAGTTTCATTCCCAGTCTA
16211274 AGATCGGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 15 0.62
27 3 0.12
28 6 0.25
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (28 bp):
GCATACGGAGTTTCATTCCCAGTCTAGA
Found at i:16212147 original size:26 final size:26
Alignment explanation
Indices: 16212111--16212163 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16212101 GTTGACTTAG
16212111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16212137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16212163 G
1 G
16212164 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16212986 original size:24 final size:23
Alignment explanation
Indices: 16212959--16213011 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
16212949 TCTTGCGCAT
*
16212959 CCCGCCTTTCTGGCCGGCTGAGCG
1 CCCGCC-TTCTGGCCGACTGAGCG
*
16212983 CCCGTACTTCTGGCCGACTGAGCG
1 CCCG-CCTTCTGGCCGACTGAGCG
16213007 CCCGC
1 CCCGC
16213012 ACGCTTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.08, C:0.43, G:0.30, T:0.19
Consensus pattern (23 bp):
CCCGCCTTCTGGCCGACTGAGCG
Found at i:16213722 original size:26 final size:26
Alignment explanation
Indices: 16213693--16213745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16213683 GTTGACTTAG
16213693 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
* * *
16213719 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
16213745 G
1 G
16213746 ATCATACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:16214376 original size:665 final size:670
Alignment explanation
Indices: 16213413--16214745 Score: 1732
Period size: 665 Copynumber: 2.0 Consensus size: 670
16213403 GCACGGAGAC
* * *
16213413 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCACTT
1 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTGCATCCCATCACTC
* * * * *
16213478 TGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTAGTTTCATCTGTTGTCTTAGGCATATAGA
66 TGGCCGGCATAGT---CGCCCGCCCGTCCACCCGCTAGTTTCATCGGTTGGCTTAGGCATACAGA
* * * ** *
16213543 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATTGGCAGTATGCAGA
128 GTTCATTCCCAGTCTAAGATCAGAACAGACCAAGGGTTGCAGCAGCAGAATCAGCAGCATGCAGA
* * ** ***
16213608 GGGGGACCCGACCGATCCCCGGCTTGAGTATCCTGCCCCTCTGGCCGGTTGAGTGCCAGCATGCT
193 GGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCAAGTTGACCACCAGCATGCT
** *
16213673 CATTTTGTAGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGCATATGGAGTTCATTCCC
258 CATTTCATAGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGCATACGGAGTTCATTCCC
* * ** * * **
16213738 AGTCTAAGATCATACC-GAACCGAGGGTTACGGCGGCACATGCTGGGCTCGGGCATGTGCTGGTG
323 AGTCTAACATCAGACCAG-ACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCATGTGCTGGCA
* * * *
16213802 TCGCATTTTT-TTCGCCAGGGCA-C-CGT-CATCG-GG-GAACCTGACCGGTGGCATTGGGGTTC
387 CCGCATTTTTCTTCACCAGGGCACCACGTAAATCGAGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * ** * *
16213861 CGACGATCGGGGGGGTCAGG-GGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTGCTTGGCCCT
452 CGACGATC-AGGGGGCCAGGTGGGTGTGCGCACAAGACGTGCGATGGGTGCTAGTACTTGGCCCT
* *
16213925 TATAGTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGAT
516 TACAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG--CATTTGAGAT
* *
16213990 TTTACAGGTTTGCTACCAGCAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCA
579 TTTACAGGTTTGCTACCAGCAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCA
16214055 CAAAATCTTGTACACTGGCATGTAGAA
644 CAAAATCTTGTACACTGGCATGTAGAA
* * * * * *
16214082 ATATAAAGATGTGCCTAAACTCACTTACCACCCTATCGCTACACGGTTTGTGCATCCCGTCTCTC
1 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTGCATCCCATCACTC
* * *
16214147 TGGCCGTCATAGT-GCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
66 TGGCCGGCATAGTCGCCCGCCCGTCCACCCGCTAGTTTCATCGGTTGGCTTAGGCATACAGAGTT
** **
16214211 CATTCCCAGTCTAAGATC-GAATTGAACTGAGGGTTGCAGCAGCAGAATCAGCAGCATGCAGAGG
131 CATTCCCAGTCTAAGATCAGAACAG-ACCAAGGGTTGCAGCAGCAGAATCAGCAGCATGCAGAGG
* ** * * *
16214275 GGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAAGTTGACCACCCGCATGCTCG
195 GGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCAAGTTGACCACCAGCATGCTCA
* * * * *
16214340 TTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCAG
260 TTTCATAGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG
* **
16214405 TCTAACATCGGACCAGACCGAGGGTTGTAACAGCACATGCTGGGCTCGAGCATGTGCTGGCACCG
325 TCTAACATCAGACCAGACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCATGTGCTGGCACCG
* *
16214470 CATTTTTCTTCATCGGGGCACCATCGTAGGAAAATCGTAGGAGAACCTGACCGGCGGCATTGGGG
390 CATTTTTCTTCACCAGGGCACCA-CGT----AAATCG-AGGAGAACCTGACCGGCGGCATTGGGG
* * * *
16214535 TTTCGGCGATCAGGGGGCCGGGTGGGTGTGGGCACAAGACGTGCGATGGGTGCTAGTACTTGGCC
449 TTCCGACGATCAGGGGGCCAGGTGGGTGTGCGCACAAGACGTGCGATGGGTGCTAGTACTTGGCC
*
16214600 CTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCATTTGAGAT
514 CTTACAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCATTTGAGAT
*
16214665 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCA
579 TTTACAGGTTTGCTACCAGCAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCA
16214730 CAAAATCTTGTACACT
644 CAAAATCTTGTACACT
16214746 TCTAGTTTTT
Statistics
Matches: 567, Mismatches: 82, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
664 3 0.01
665 262 0.46
666 10 0.02
667 1 0.00
669 70 0.12
674 4 0.01
675 88 0.16
676 10 0.02
677 119 0.21
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (670 bp):
ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTGCATCCCATCACTC
TGGCCGGCATAGTCGCCCGCCCGTCCACCCGCTAGTTTCATCGGTTGGCTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCAGAACAGACCAAGGGTTGCAGCAGCAGAATCAGCAGCATGCAGAGGG
GGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCAAGTTGACCACCAGCATGCTCAT
TTCATAGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGT
CTAACATCAGACCAGACCGAGGGTTACAACAGCACATGCTGGGCTCGAGCATGTGCTGGCACCGC
ATTTTTCTTCACCAGGGCACCACGTAAATCGAGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCAGGGGGCCAGGTGGGTGTGCGCACAAGACGTGCGATGGGTGCTAGTACTTGGCCCTTACAG
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCATTTGAGATTTTACAG
GTTTGCTACCAGCAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTGGCATGTAGAA
Found at i:16214392 original size:26 final size:26
Alignment explanation
Indices: 16214358--16214416 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16214348 GTTGTCTTAG
16214358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16214384 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16214410 -CAT-CGGA
1 GCATACGGA
16214417 CCAGACCGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16215290 original size:26 final size:26
Alignment explanation
Indices: 16215253--16215305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16215243 GTTGACTTGG
*
16215253 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16215279 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16215305 G
1 G
16215306 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16217050 original size:26 final size:26
Alignment explanation
Indices: 16217013--16217065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217003 GTTGACTTAG
*
16217013 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16217039 GCATAC-GAAGTTCACTCCCAGTCTAA
1 GCATACAG-AGTTCACTCCCAGTCTAA
16217065 G
1 G
16217066 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16217943 original size:26 final size:26
Alignment explanation
Indices: 16217906--16217958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217896 GTTGACTTAG
*
16217906 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16217932 GCATAC-GAAGTTCACTCCCAGTCTAA
1 GCATACAG-AGTTCACTCCCAGTCTAA
16217958 G
1 G
16217959 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16219121 original size:903 final size:897
Alignment explanation
Indices: 16214070--16221395 Score: 9010
Period size: 893 Copynumber: 8.2 Consensus size: 897
16214060 TCTTGTACAC
* * * * * * * *
16214070 TGGCATGTAGAAATATAAAGATGTGCCTAAACTCACTTACCACCCTATCGCTACACGGTTTGTGC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
16214135 ATCCCGTCTCTCTGGCCGTCATAGTGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* *** * *
16214200 CATACAGAGTTCATTCCCAGTCTAAGATC-GAATTGAACTGAGGGTTGCAGCAGCAGAATCAGCA
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * *
16214264 GCATGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAAGTTGACCAC
195 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* * *
16214329 CCGCATGCTCGTTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
260 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *** * *
16214394 TTCCTTCCCAGTCTAACATCGGACCAGACCGAGGGTTGTAACAGCACATGCTGGGCTCGAGCATG
325 TTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACTGGGC-AG-GCATG
** * ** ** *** *
16214459 TGCTGGCACCGCATTTTTCTTCATCGGGGCACCATCGTAGGAAAATCGTAGGAGAACCTGACCGG
388 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * * * ** * *
16214524 CGGCATTGGGGTTTCGGCGATCAGGGGGCCGGGTGGGTGTGGGCACAAGACGTGCGATGGGTGCT
453 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACACGATGTGCGATGGGTGCT
* *
16214589 AGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA
518 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
16214653 -AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTT
583 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
16214717 TTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
648 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
16214782 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTATAAAA
713 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * *
16214847 TCTTTAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
778 TCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
16214912 TCACGT-AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
843 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16214966 TGGCAGACAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
16215031 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGCTCATTTCTTCTGTTGGCTTAGG
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
** * * * * *
16215096 CATACGGAGTTCATTCCCAGTCTAACTTCAGAACGGA-TAGAGGGTTGC-GACAGTAGGATCCGT
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAG-CAGCAGGATCGGC
* * * * *
16215159 AGCACGCAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGAGCA
194 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
* * * * * * *
16215223 CTCGCACGCTCGATTCATGGGTTGACTTGGGCATACGAAGTTGATTCCCAGTCTAAGCATACAGA
259 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
16215288 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCAGGCAT
324 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACTGGG--CAGGCAT
* * ** * *
16215353 GTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCG
387 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG
* * * * * * *
16215418 GCGACATTGGGGTTCCGACGATCGAGGGGCCCGGGGGGGTGTGCATAGATGATGTGCGGTGGGTG
452 ACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCACACACGATGTGCGATGGGTG
16215483 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
516 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
16215548 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
581 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16215613 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTGTTTTGTGCATGCCA
646 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * * *
16215678 AAAAAAATACAAGGATCGTGTCTGCCAAGTTTAGGGCCTAAACTCCTTCTGAAAAAATTTAAAAA
711 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * *
16215743 AATCTCGAACCGTAAAATGTTTCTAAAATCATGAAAAATAGAAAATGAATCATCTTGCCATGAAA
776 AATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
16215808 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
841 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
16215865 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * **
16215930 ATCCCTTCTCTCTGGGCGGCGTAGTGCCCACCCATCCG----CTCGTTTCGTCGGTTGGCTTAGG
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
16215991 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAG
* * * *
16216056 CACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCTGCTGAGCGCC
196 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
* * * *
16216121 CGTACGCTAGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCA-TCTAAG-AT-C--AG-
261 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
16216180 --------AG--T-AGAT-----C-G----AGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGT
326 TCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACT-GG-GCAGGCATGT
* * * * *
16216224 GCTGGTGCCGTATTTTTCTTCG-CTGAGACACCAT---C---G-AT----GGAGAACCTGACTGG
389 GCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* ** ** *
16216277 CAGCATTGGGGTTCCGGTGATCAAGGGGCCGGCGGGGGTGTGCACA-A-GATGTGCGTTGGGTGC
453 CGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGGTGTGCACACACGATGTGCGATGGGTGC
*
16216340 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAA
517 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
16216405 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTT
582 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
16216470 TTTTCAAATGGTCACAAAATCTTGTACACTTC-ATGTTTTTAGCTGAAAGTTTTTGTGCATGCCA
647 TTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** ** * *
16216534 AAAAAAACCCAAGGATCACGTCTACCGGGTTTTGGGCCAAAACTCCTTCCGAAAAATTTTTAAAA
711 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
16216599 AATCTCGAACCGCAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGGGTCATCTTGCCTTGAAA
776 AATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
16216664 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCAT
841 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16216721 TGACATGTAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCGATCGATCCACGGCTTGCGC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
16216786 ATCCCGTCTTTCTGGCCGGCGTAGTGCCCGACGGCCCGTCCGCCCGTACGTTTCATCGATTGGCT
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-CAC-T-CGTTTCGTCGGTTGGCT
* * * ** * * *
16216851 TAGGCATACGGAGATCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTGTGGCTGCACGCTCG
127 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCG
* * * * * * * ** *
16216916 ACAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTACGTATCCCACCCCTCTGATCGGCTGAG
192 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * *
16216981 CGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
257 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16217046 AAGTTCACTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTTGCGGCAGCACATACTAGGCTCAGG
322 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCGGCAGCACATACT-GG-GCAGG
* * * *
16217110 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCTGAGGATCACCGAAGAACCTGT
384 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * *
16217175 CCGACGGGATTGGGGTTCCGACGATCGGGGGGCGGGGGGGCGTGTGCACAC-CTGATGTGTGATG
449 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTGTGCACACAC-GATGTGCGATG
*
16217239 GGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
512 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
16217304 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCTAGTAGCCATTAAAGTGTCTAAAATGGGGA
577 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
** *
16217369 TGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCAT
642 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
16217434 GCCAGCGAAAATACAAGGAACACGTCTA-CATGTTTGGGGCCAAAAC-ACTATCCGAAAAAATTT
707 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTT
* * *
16217497 TAAAAAATC-CTAAACCGCAAGAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
771 TAAAAAATCTC-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
16217561 ATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
835 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
16217624 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCAATCCACGGCTTGCGT
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
16217689 AT-CC-TGTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCA----TTTCGCCGGTTGGCTTAGG
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * *** * *** *
16217748 CATACGGAGATCATTCCCAGTCTAAGAT-TGAATTGGATTGATCATTGCAGCAGCAGGATCGCCA
131 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCAGCAGCAGGATCGGCA
* * * * * *
16217812 GCACACAGATGGGGACCCGATCGGTCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
195 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* * *
16217877 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
260 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
16217942 TTCACTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTTGCGGCAGCACATACTAGGCTCAGGCAT
325 TTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCGGCAGCACATACT-GG-GCAGGCAT
* * * *
16218006 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCTGAGGATCACCGAAGAACCTGTCCG
387 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG
* * *
16218071 ACGGGATTGGGGTTCCGACGATCGGGGGGCGGGGGGGCGTGTGCACAC-CTGATGTGTGATGGGT
452 ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTGTGCACACAC-GATGTGCGATGGGT
*
16218135 GTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
515 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
16218200 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
580 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
16218265 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTGGCTGAATTTTTTT-TGCATGCC
645 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
16218329 AACAAAAATTCAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
710 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * * *
16218394 AAATC-CGAAACCACAGAATGTTTCAAAAATCATAAAAAATATAAAACGAGTTGTCTTGCCATGA
775 AAATCTCG-AACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
16218458 AACTTCATGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
839 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
16218516 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
16218581 ATCCCGTCTCTTTAGTCGGCGTAGTGACCGCCCGTCCGCCCGCCCGCCCACTCGTTTCGTCGGTT
66 ATCCCGTCTCTCTGGCCGGCGTAGT----G--C--CCGCCCGCCCGCCCACTCGTTTCGTCGGTT
* * **
16218646 GGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTGCAGTAATAGG
123 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGG
* * * * * * *
16218711 ATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGCTCATCTCGCCCCTATGGCCAGC
188 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC
* * * * *
16218776 TGAACGCCCGCACACTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCA
253 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
16218841 CACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAAATGCTGGGC-G
318 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACTGGGCAG
* ** *
16218905 GCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGTGCCATCGTCGGAGCATCACCGGAGAACCTG
383 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* *
16218970 AACGGCGGCATTGGGGTTCCGGA-GATCGAGGGGGCCGGGGGGGTGTGCACACACGATGTGCGAT
448 ACCGACGGCATTGGGGTTCC-GACGATCG-GGGGGCCGGGGGGGTGTGCACACACGATGTGCGAT
*
16219034 GGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
511 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
16219099 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCGGTAGCAATTAAAGTGTCTGAAATGGGG
576 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
16219164 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGCA
641 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
16219229 TGCCAACAAAAATA-AATGGATCACGTCTACCAAGTTTGGGACAAAAAATCCTTCCGAAAAAAAT
706 TGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
16219293 TTAAAAAAT-TCTGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGC
770 TTAAAAAATCTC-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
16219357 CATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
834 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16219421 TGGCATGTAGAAATATAAAGATGTGCCTAAACTCACCTACCACCCTATCG-CCGCACGGCTTGCG
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCG
* * * *
16219485 CATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
65 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* *** * * *
16219550 GCATACGGAGTTCATTCCCAGTCTAACATC-GAATTGAACTGAAGGTTACAGCAGCAGGATTGGC
130 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCAGCAGCAGGATCGGC
* * * * * *
16219614 AGCATGCAGAGGGGGACCCGATCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGTTGACCA
194 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
* * *
16219679 CCCAATCAATCCCCTCTTGCGCATCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCACTCCCAG
259 CCC--GC-A----------CGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * ** *
16219744 TCTAAGCATACGGAGTTCCTTCCCAGTCTAACATCGGACCAGACC-GGGGTTGCAACAGCACATG
310 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATA
* * * * * * * * ** **
16219808 CTGGGCTCGGGAATGTGCTGGTGCCGTAATTTTCTTCATCGGGACACCATCGTCGAAAAATCGTC
375 CTGGG--CAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACC
* * *
16219873 GGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGGC-CACATG
438 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGT-GCACACACG
*
16219937 ATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
502 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
16220002 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTTT
567 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
** *
16220067 GAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTT
632 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
16220132 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
697 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
16220197 AAAAAAATTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
762 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
*
16220262 GTCTTGCCATGAAACTTCACGT-AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
827 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
16220326 TGGCAT
892 TGGCAT
* * * *
16220332 TGGCACACT-GAAATATGAAGATGTGCCTAAATCAACCTACCAGCCTATCGATCCACGGCTTGCG
1 TGGCATA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
16220396 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCATTTCTTCAGTTGGCTTAG
65 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* ** * * *
16220461 GCATACAGAGTTCATTCCCAGTCTAACTTCAGACCGGA-TAGAGGGTTGC-GACAGTAGGATCAG
130 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAG-CAGCAGGATCGG
* * *
16220524 CAGCACGCAGA-GAGGACCC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAG
193 CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
* * *
16220587 CGCTCGCACGCTCGATTT-GTGGGTTGACTTGGGCATACGGAGTTGATTCCCAGTCTAAGCATAC
257 CGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * * *
16220651 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACTGTAGCACATCCTGGGCTCGGG
321 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACTGGG--CAGG
* *
16220716 CATGTGCTGTTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G-----CCGGAGAACCTGA
384 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * * * *
16220770 CCGACGACATTGGGGTTCCGATGATCGGGGGGCC-GGGGGGTGTG-AGCAGATGATGTGCGGTGG
449 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCA-CACACGATGTGCGATGG
16220833 GTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
513 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
16220897 TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
578 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
16220962 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATG
643 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** * * *
16221027 CCAAAAAAAATACAAGGATCGTGTCTGCCGAGTTTGGGGCCTAAAA-TCCTTCCAAAAAAATTTT
708 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTT
* * * * * * * *
16221091 ATAAAATCTCAAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAGAATGAGTCATCTTGCCAT
772 AAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
16221156 CAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
837 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * ** * *
16221217 TGGCATGCAAAAATATGAAGATGTACCTAAACCTGCCTACCACCCTATCGATCCACGGCCTGCAC
1 TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * *
16221282 ATCCCTTCTCTCTGGCCGG-G--GTG-GTGCCCGCCCACCCACTCGTTTCATCGGTTGGCTTAGG
66 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * ** * *
16221343 CATACGGAGTTAATTCCCAGTCGAAGATTGGACTAGACTGAGGGTTGCTGCAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAG
16221396 TATGCATACG
Statistics
Matches: 5623, Mismatches: 670, Indels: 289
0.85 0.10 0.04
Matches are distributed among these distances:
855 1 0.00
856 453 0.08
857 8 0.00
858 44 0.01
862 3 0.00
863 2 0.00
864 163 0.03
865 6 0.00
866 3 0.00
867 1 0.00
868 1 0.00
869 57 0.01
870 2 0.00
873 1 0.00
874 1 0.00
878 2 0.00
879 4 0.00
880 2 0.00
881 74 0.01
882 7 0.00
884 297 0.05
885 153 0.03
886 45 0.01
887 1 0.00
891 64 0.01
892 136 0.02
893 654 0.12
894 19 0.00
895 320 0.06
896 430 0.08
897 212 0.04
898 243 0.04
899 141 0.03
900 3 0.00
901 32 0.01
902 63 0.01
903 481 0.09
904 357 0.06
905 127 0.02
906 218 0.04
907 4 0.00
908 1 0.00
909 1 0.00
910 69 0.01
911 289 0.05
912 349 0.06
913 79 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATACTGGGCAGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACACGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
Found at i:16219759 original size:26 final size:26
Alignment explanation
Indices: 16219723--16219781 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
16219713 GTTGCCTTAG
16219723 GCATACGGAGTTCAC-TCCCAGTCTAA
1 GCATACGGAGTTC-CTTCCCAGTCTAA
16219749 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCCTTCCCAGTCTAA
16219775 -CAT-CGGA
1 GCATACGGA
16219782 CCAGACCGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 24 0.75
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCCTTCCCAGTCTAA
Found at i:16220655 original size:26 final size:26
Alignment explanation
Indices: 16220619--16220671 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220609 GTTGACTTGG
* *
16220619 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16220645 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16220671 G
1 G
16220672 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16221917 original size:26 final size:26
Alignment explanation
Indices: 16221881--16221933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16221871 GTTGACTTAG
* *
16221881 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16221907 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16221933 G
1 G
16221934 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16223136 original size:870 final size:871
Alignment explanation
Indices: 16221438--16225471 Score: 4106
Period size: 902 Copynumber: 4.6 Consensus size: 871
16221428 AGACTGGACC
** *
16221438 ACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAAT-CTCGAACCTTAAAGAGTT
1 ACCAAGTTTGGGG-CAAAACTCCTTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTT
** * * *
16221501 TTGAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCAT-AAACTTCACGTGAAGGCTTAAGGG
64 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGG
16221565 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
129 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
16221630 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTG--C
194 AACCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * *** * *
16221693 -CT--GCCCGC-TCGTTTCATCGGTTTTATTAGGGATACGGAGTTCATTCCCAGTCTAAGACCAG
259 GCTCGGCCCACTTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * ** * *** ** *
16221754 ATCAGACCGAGGGTTGCGGTAGTACGATCGGTAGGATGCAGAGGGGGACCCGGCCGATCCCCAAC
324 ACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGAC
* * * * *
16221819 TTGCGTATCCCGCCCCTCTGGCCAGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCA
389 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCA
*
16221884 TACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACAGA
454 TACGGAGTTCATTCCCAGTCTAAG-AT-C--AG----------A-C------CGGA-C---C-GA
* *
16221949 GGGTTACGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGGGGCA
493 GGGTTACGGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCA
* * ** *
16222013 CCATCGTCGGAGCATC-CCTGGAGAACTTGACCTG-CAGCATTGGGGTTCCGGTGATCGGGGGGG
557 CCATCGTCGGAGCATCACC-GGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGTG
* *
16222076 CCGGGGGGTGTGCGCACATGATGTGTGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
620 CCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16222140 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGC
685 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16222205 CAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACT
750 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
16222270 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCT
815 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * *
16222327 ACCAAGTTTGGGGCAAAAC-CCTTTCCGAAAAAATTTTAAAAAATCTTGGACCGTAAAAAGTTTC
1 ACCAAGTTTGGGGCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
*
16222391 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGACTTAAGGGAC
66 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGAC
16222456 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
131 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
** * *
16222521 CCCACCTACCACCCTAACGATCCACAATTTGCGTATCCCATCTCTCTGGCCGGCGTAGTGCCCG-
196 CCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
*
16222585 TCGGCCCA-TTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
261 TCGGCCCACTTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * **
16222649 CAGACCGAGGGTTGCGACAGCATGATCGGTAGCACATAGAGGGGGACCCGACCAAACCTTGACTT
326 CAGACCGAGGGTTGCGACAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGACTT
*
16222714 GCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACT-CTCATTTCGTGGGTTGACTTAGGCAT
391 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA-TGCTCATTTCGTGGGTTGACTTAGGCAT
* *
16222778 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCGAGGGTTACGGTAGCACATGCTGGGCTCG
455 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTCG
* * * * * **
16222843 AGAATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCTTTGCCGGAGCATCGTCGGAGAACCT
520 AGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * *
16222908 GACCAACGGCATTGGGGTTTCGACAATCGGGGGTGCCGGGGGGGGTGTACGCACATGATGTGCGA
585 GACCGACGGCATTGGGGTTCCGACGATCGGGGGTGCC--GGGGGGTGTTCGCACATGATGTGCGA
* * *
16222973 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTAATACC
648 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
16223038 CTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGG
713 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
16223103 GACACTTTTTTCAAATGGTCA-AAATATCTTGTACACTTCGACTTTTTAG-TCAAATTTTTTTGT
778 GACACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGT
* *
16223166 GCATGCCAACAAAAATACAAAGATCACGTCT
841 GCATGCCAAAAAAAATACAAGGATCACGTCT
* * *
16223197 ACCAAGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCTGAATCACAAAAAGTTT
1 ACCAAGTTTGGGG-CAAAACTCCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * * *
16223261 CAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGA
65 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGA
* *
16223326 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGCGCCTAA
130 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
** * *
16223391 ACCCATTTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG
195 ACCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
16223456 CCCGCCCGCCTACTTTTTTTCGTCGGTTGGCTTATGCATACGGAGTTTATTCCCAGTCTAAGATC
260 CTCG---GCCCACTTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
16223521 AAACCGGACTGAGGGTTGC-AGTAGTAGGATCGACAGCATGCA-A-AAGGGGACCCGGTCGATCC
322 AGACCAGACCGAGGGTTGCGA-CAGCAGGATCGACAGCA--CATAGAGGGGGACCCGATCGATCC
* * * ** * * * * * *
16223583 TCGGCTTGCGTATCCCGCCTTTTTGGCCGACGGAGCACCCGCACGCTCCTTTCGTGGGTTGACTT
384 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGAC--
* * *
16223648 AGGTAGATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAG
447 ---T---T--AG----------------GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
16223713 ACCGAGGGTTACGGCAGCACATGCTATGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGG
488 ACCGAGGGTTACGGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * *
16223778 GGTACCATCGTCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATTGGGGG
553 GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * * *
16223843 TGCTGGGGGGGTGTTCGCACATGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCT
618 TGC-CGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16223908 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
682 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16223973 TGCCAGTAGGCATTAAAGTGTCTAAAATGGGGAACACTTTTTTTCAAATGGTCACCAAAATCTTG
747 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGG-ACAC-TTTTTTCAAATGGTCA-CAAAATCTTG
* *
16224038 TTACCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAACAAATACCAGGGATCACGTC
809 -TA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA-CAAGGATCACGTC
16224103 T
871 T
* ** ** * * *** * * * * *
16224104 ACCAAGTTTGGGCCAACGCT-C-GGCCGAAAGAATGTT-CGCAAGCCCGAACCGCATAGAGTGTC
1 ACCAAGTTTGGGGCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
*
16224166 ----AT-GTG-AAAAT----AAC-AGTCGTCTTGCCATG--AC--CACAGTG-A-A-TT----G-
66 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-GTGAAGACTTAAGGGA
* * ** * *
16224208 CCATTCTTATG-A-TTA-AATCCAT-AAAATGGCCCTGGCA-GTAGAAAAATGAA-ATG-GCCTA
130 CCATT-GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * **
16224266 AGCCCACCTACCA-CCT-ATGAT-CAC-G-CTGCGCATCCCGTCT-TCTGGCCGATGTAGTACCG
194 AACCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---G
* * *
16224325 ACCCGACTGTCGGCCCGC-TCGTTTT-GTCAGTAGGCTTAGGCATACGGAGTTCATTCCCAATCT
256 -CCCG-C--TCGGCCCACTTC-TTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * ** * *
16224388 AAGACCAGACTGGACTGAGGGTTACGGCAGCAGGATCGACAGCATGTAGAGGGGGACTCGGTCGA
316 AAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGA
* * * * * * * * *
16224453 CCCCCGGCTTACGCATCCCGGCCCTCTGACCAGCTGATCGCCCGCATGCTCGTTTCGTGGGTTAA
381 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGA
*
16224518 CTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTTATTCCCAGTCTAAGATCAGAC
446 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G----GA-
* * *
16224583 CAGATCGAGGGTTGCGGTAGCACATGCTGGGCTC-AGGCATGTGCTGGTGTCGCATTTTTCTTCA
489 C----CGAGGGTTACGGTAGCACATGCTAGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * *
16224647 TCGGGACACCATCGTCGGAGCATCACCAGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCG
549 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
*
16224712 AGGGG-GCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGC
614 -GGGGTGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16224776 CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCTCTTAAAGAGCATTTGAGATTTTACAGGT
678 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16224841 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTT
743 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16224906 GAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
808 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
*** * * * *
16224970 ACCAAGTTTGTTACCAAAACTCC-TTCTGAAAAAATTTTCAAAAATCAC-GAGCCGAAAAAAGTT
1 ACCAAGTTTG-GGGCAAAACTCCTTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTT
* *
16225033 TCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
64 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGG
* * ** ** *
16225098 ACCACTGTATGAAATTACAAGCCATAAAAATGGCATTACCACACAGAAATATGAAGATATGCCTA
129 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * * *
16225163 AACCCACTTACGACCCTATCGAACCACGGCTTGCGCATCTCGTCTCTCT-GCCGGCGTAGTGCCC
194 AACCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* ** * * * * * *
16225227 GCTCACCCGCCCACCCGTTCAATTCATCGGTTGGCTCAGCCATACGAAGTTAATTCCCAGTCTAA
259 GCT---CGGCCCA--C-TTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
16225292 GAT-TGAACCAGACCGAGGGTTGCGGCAACAGGATTGGCAGCACGCAGAGGGGGACCCGATCGAT
318 GATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGAT
* *
16225356 CCCCGACTTGCGCATCCCGCCCCT-TTGCATGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGA
382 CCCCGACTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGA
* * **
16225420 CTTTGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGAATGAGGGTT
446 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
16225472 GTGGCAGCAA
Statistics
Matches: 2621, Mismatches: 368, Indels: 325
0.79 0.11 0.10
Matches are distributed among these distances:
847 26 0.01
848 2 0.00
849 1 0.00
851 1 0.00
854 1 0.00
858 1 0.00
861 1 0.00
863 1 0.00
865 1 0.00
866 23 0.01
867 160 0.06
868 18 0.01
869 55 0.02
870 244 0.09
871 236 0.09
872 159 0.06
873 248 0.09
874 21 0.01
875 14 0.01
876 161 0.06
877 6 0.00
878 13 0.00
879 17 0.01
880 21 0.01
881 6 0.00
882 8 0.00
883 8 0.00
884 5 0.00
885 1 0.00
886 4 0.00
887 4 0.00
888 76 0.03
889 161 0.06
890 8 0.00
891 11 0.00
892 5 0.00
893 199 0.08
894 14 0.01
895 12 0.00
896 2 0.00
897 16 0.01
898 19 0.01
899 6 0.00
900 7 0.00
901 156 0.06
902 335 0.13
903 19 0.01
904 22 0.01
905 15 0.01
906 46 0.02
907 25 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
ACCAAGTTTGGGGCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTAACGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
TCGGCCCACTTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGACAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGACTT
GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTCGA
GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTTCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCT
Found at i:16225523 original size:159 final size:159
Alignment explanation
Indices: 16225267--16225610 Score: 440
Period size: 159 Copynumber: 2.2 Consensus size: 159
16225257 TTGGCTCAGC
* * * * * *
16225267 CATACGAAGTTAATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGCAACAGGATTGGCAG
1 CATACAAAGTTCATTCCCAGTCTAAGATAGAACCAGAACGAGGGTTGCGGCAACAAGATCGGCAG
* * *
16225332 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCT-TTGCATGGCTGAGCGC
66 CACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGC
* *
16225396 CCGCATGCTCATTTCGTGGGTTGACTTTGG
130 CCGCACGCTCATTTCGTGGGTTGACTTAGG
** * * * * *
16225426 CATACGGAGTTCGTTCCCAGTCTAAGATCAG-ACCGGAATGAGGGTTGTGGCAGCAAGATCGGCA
1 CATACAAAGTTCATTCCCAGTCTAAGAT-AGAACCAGAACGAGGGTTGCGGCAACAAGATCGGCA
* *
16225490 GCACGCAGAGAGGGACCTGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGC
65 GCACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
16225555 CTGCACGCTCGTTTCGTTGGTTGACTTAGG
130 CCGCACGCTCATTTCGTGGGTTGACTTAGG
*
16225585 CATACAAAGTTCATTCCCAATCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
16225611 CATACAGAGT
Statistics
Matches: 158, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
159 154 0.97
160 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
CATACAAAGTTCATTCCCAGTCTAAGATAGAACCAGAACGAGGGTTGCGGCAACAAGATCGGCAG
CACGCAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAGG
Found at i:16225621 original size:26 final size:26
Alignment explanation
Indices: 16225584--16225636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16225574 GTTGACTTAG
16225584 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
* *
16225610 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
16225636 G
1 G
16225637 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:16227105 original size:26 final size:26
Alignment explanation
Indices: 16227075--16227127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227065 GTTGACTCAG
* *
16227075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
16227101 GCATACAGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
16227127 G
1 G
16227128 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:16227782 original size:26 final size:26
Alignment explanation
Indices: 16227752--16227804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227742 GTTGACTTAG
*
16227752 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16227778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16227804 G
1 G
16227805 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16228658 original size:26 final size:26
Alignment explanation
Indices: 16228622--16228674 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16228612 ATTGACTTAG
16228622 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16228648 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16228674 G
1 G
16228675 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16229061 original size:869 final size:875
Alignment explanation
Indices: 16227178--16229176 Score: 2588
Period size: 869 Copynumber: 2.3 Consensus size: 875
16227168 CGGCATTTTT
* * * *
16227178 CTGCTAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
16227243 CACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
66 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
16227308 AGTTTGGG-GACAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
131 AGTTTGGGCGA-AAAACTTCC-T-CGAAAAAATATTAAAAAATCTCGAACCACAAAAAGTTTCAA
* *
16227371 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCA
193 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
16227436 TTGTATGAATTTACAAGCCATATAAATGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACC
258 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACC
* * * *
16227501 CACCTACCAACCTATCAATCCACGGCTTGCGCATCCCGTTCCTCTGGCCGGCGTAGTGCTCGCCC
323 CACCTACCAACCTATCAATCCACGGCTTGCGCATCCCATTCCTCTCGCCGGCATAGTGCCCGCCC
*
16227566 GCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAA
388 GCCCGCTCGTTTCATCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT--------A
* * * * * *
16227631 CTGAGGGTTACGACAGTAGGATAGACATCACGTAGAGGGGGACCGGACCGATCCTTGGCTTGCGC
445 -T---GG-T--GA-AGT---ACAGA-ATCACGTAGAGAGGGACCCGACCGATCCTCGACTTCCGC
** * * * *
16227696 ATTGCGCCCCTTTGGCCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGA
498 ATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAGA
* * *
16227761 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
563 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTG
** *
16227826 CGGTGGCACATGCTAGGCTCGGGCATATGCTGAAGCCACATTTTTCTTTGTCGGGGCACCATCGC
628 CGGCAGCACAAGCTAGGCTCGGGCATATGCTGAAGCCACATTTTTCTTTGTCGGGGCACCATCGC
* *
16227891 AGGAGCAACACCGGAGAACCTTACCTGCGGCATTGAGGTTCCGACGATCGGGGTGGCCGGGGGGG
693 AGGAGCAACACCGGAGAACCTGACCTGCGGCATTGAGGTTCCGACGATCAGGGTGGCCGGGGGGG
* *
16227956 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
758 TGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
16228021 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
823 AAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTA
* * *
16228074 CTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATGTTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
16228139 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTGTACCA
66 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * ** **
16228204 AGTTTGGGCCAAAAACTTCCCTCGAAAAAATGTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAA
131 AGTTTGGGCGAAAAACTT-CCTCGAAAAAATATTAAAAAATCTCGAACCACAAAAAGTTTCAAAA
* *
16228269 ATCATAAAAAATAGAAAATGAGTCGTCTT-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
195 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
16228333 GTATGAATTTACAAGCTATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTA
260 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCCA
**
16228398 CCTACC-ACCTTATTGATCCACGGCTTGCGCATCCCA-TCTCTCTCGCCGGCATAGTGCCCGCCC
325 CCTACCAACC-TATCAATCCACGGCTTGCGCATCCCATTC-CTCTCGCCGGCATAGT----G--C
* *
16228461 GCCGACCCGCCCGCTCGTTTCATCGGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-
382 -CCG-CCCGCCCGCTCGTTTCATCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATA
*
16228524 T-G-G-A-T-CAG-A-C-CG-A-A-AGGGACCCGATCGATCCTCGACTTCCGCATCCCACCCCTC
445 TGGTGAAGTACAGAATCACGTAGAGAGGGACCCGACCGATCCTCGACTTCCGCATCCCACCCCTC
* * * **
16228578 TGGCCGGTTGAGCGCCCGTACGCTCGTTTTGTGGATTGACTTAGGCATACAGAGTTCATTCCCAG
510 TGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCAG
* *
16228643 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTGCGGCAGCACAAG
575 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACAAG
* * ** * * * **
16228708 CTGGGCTCGGGCATGTGCTGGTGGCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTC
640 CTAGGCTCGGGCATATGCTGAAGCCACATTTTTCTTTGTCGGGGCACCATCGCAGGAGCAACACC
* * *
16228773 GGAGAACCTGACC-GACGGCATTGTGGGTTCTGACGATCAGGG-GGTC-GGGGGGTGTGCACAAA
705 GGAGAACCTGACCTG-CGGCATTG-AGGTTCCGACGATCAGGGTGGCCGGGGGGGTGTGCACAAA
*
16228835 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAG
768 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16228900 AACTCACACCCTCTTAAAGAGCAATTGAGATTTTACAGGTTTA
833 AACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTA
* * *
16228943 TTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTG
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
16229008 CACTTCGAGTTTTTAGCTGACTTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTAGCA
66 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** *
16229073 AGTTTGGGGTCGAAAGTCATT--TTGAAAAAATATTAAAAAATCTCGAACCACAAAAAGTTTCAA
131 AGTTT-GGG-CGAAAAAC-TTCCTCGAAAAAATATTAAAAAATCTCGAACCACAAAAAGTTTCAA
*
16229136 AAATCGA-GAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
193 AAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
16229177 CGGACAGCTC
Statistics
Matches: 970, Mismatches: 113, Indels: 66
0.84 0.10 0.06
Matches are distributed among these distances:
869 298 0.31
870 237 0.24
871 21 0.02
872 3 0.00
873 2 0.00
874 1 0.00
875 1 0.00
877 2 0.00
881 1 0.00
882 1 0.00
884 1 0.00
888 1 0.00
892 1 0.00
894 5 0.01
895 138 0.14
896 193 0.20
897 3 0.00
898 2 0.00
899 1 0.00
901 1 0.00
902 34 0.04
903 23 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (875 bp):
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGCGAAAAACTTCCTCGAAAAAATATTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCCAC
CTACCAACCTATCAATCCACGGCTTGCGCATCCCATTCCTCTCGCCGGCATAGTGCCCGCCCGCC
CGCTCGTTTCATCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATATGGTGAAGTAC
AGAATCACGTAGAGAGGGACCCGACCGATCCTCGACTTCCGCATCCCACCCCTCTGGCCGGCTGA
GCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACAAGCTAGGCTCGGG
CATATGCTGAAGCCACATTTTTCTTTGTCGGGGCACCATCGCAGGAGCAACACCGGAGAACCTGA
CCTGCGGCATTGAGGTTCCGACGATCAGGGTGGCCGGGGGGGTGTGCACAAATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCAATTGAGATTTTACAGGTTTA
Found at i:16229409 original size:26 final size:26
Alignment explanation
Indices: 16229373--16229425 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16229363 GTTGACTTAG
16229373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16229399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16229425 G
1 G
16229426 ATCGGAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16230297 original size:26 final size:26
Alignment explanation
Indices: 16230259--16230311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16230249 GTTGACTTAG
*
16230259 GCATACGAGGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16230285 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16230311 G
1 G
16230312 ATGGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.