Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 86 of 117
Found at i:16824520 original size:26 final size:26
Alignment explanation
Indices: 16824484--16824536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16824474 GTTGACTTAG
* *
16824484 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16824510 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16824536 G
1 G
16824537 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16824633 original size:11 final size:11
Alignment explanation
Indices: 16824617--16824649 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16824607 GTCGGGGCAC
16824617 CATCGCCGGAG
1 CATCGCCGGAG
16824628 CATCGCCGGAG
1 CATCGCCGGAG
*
16824639 CATCGTCGGAG
1 CATCGCCGGAG
16824650 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:16825020 original size:914 final size:897
Alignment explanation
Indices: 16821812--16825259 Score: 4591
Period size: 902 Copynumber: 3.8 Consensus size: 897
16821802 GTGGGCTTAG
* ** * *
16821812 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGA-CGAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACC-GGACCGAGGGTTACGACAGCACATGCTGG
* * * *
16821876 GCTCGGGCATGTGCTGATGCCATATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCAACGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
16821940 GAACCTGAACGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
16822005 GCGATGGGTGCTGGTACTTGGCCCTTAGATT-GCCGCCTATCCCTCATCAAACCTCGAGGACTCA
195 GCAATGGGTGC-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16822069 CACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGTCAGTAAG-CATTAAAGTGTCTAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAA
*
16822133 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
* ** *
16822198 TGTGCATGCCAACAAAAATACAATGATCATGTCTACCAAGGTTGG-GACCAAAAATCCTTCCGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAG-CCAAAAATCCTTCCGAA
** * * *
16822262 AAAATTTTGAAAAATCTTGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
* * *
16822327 CTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
*
16822392 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
* * * * *
16822457 GCGCATCCCGTCTCTCT-GCTCTGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTTGTTTCGTCGGT
647 GCGCATCCCGTCTCTTTGGC-CAGCGTAGCGCCCGC-CG-CCGCCCG-CCGCTCGTTTCATCGGT
* * * * * *
16822521 TGGCTTAGGCATACGGAGTTCATTACTAGTCTAAGAT-TGAACAGGACCAACGGTTACAGCAGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCA-GACCAAGGGTTACAGCAGCA
* * * *** * *
16822585 AGATTGGCAGCACACAGAGGGGGACGCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCAG
772 AGATCGGCAGTAC-GAGAGGGGGACATGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-G
* *
16822650 GTTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCTGAGCGCC-GCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
16822714 GCATACGGAGTTCATTCTCAGCCTAAGATTGGATCGGACCGAGGGTTGCGAAAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * **
16822779 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCG-CGGGGGCACCATCGTCGGAGCATCGTTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * * *
16822843 AACCTGACCTG-CGACATTGGGG-TTCCAGCGATCTTGGGGGTCGGGTGGTGTGCGTACATGATG
131 AACCTGACC-GACGACATTGGGGTTTCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
16822906 TGCAATGGGTGCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
194 TGCAATGGGTGCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16822971 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT-AAG
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-
* * *
16823035 CTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACACTGAGTTTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
* * * * * **
16823100 TGTGGATGCCAACAAAAATACAAGGGTCATATCTACCAAGTTTGGGGCCAAAAATTCTTTTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAA
* *
16823165 AAATTTT-AAAATATCCCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGT
453 AAATTTTGAAAA-ATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
*
16823229 CTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
* *
16823294 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCAATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
* * * *
16823359 GCGCATCCCGTCTATTTGGTCGGCGTAGCGCCCG-C-CCG--C-CCACTCGTTTCATCGGTTGGC
647 GCGCATCCCGTCTCTTTGGCCAGCGTAGCGCCCGCCGCCGCCCGCCGCTCGTTTCATCGGTTGGC
** * * *
16823419 TTAGGCATACATAGTTCATTCCCAGCGTAGGATCAGACCGGACCAAGGGTTAC-GACAGCAAGAT
712 TTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTACAG-CAGCAAGAT
* * * * *
16823483 CGGCAGAATA-GAGAGGGGGACTTGATCGATCCTCGGCTTGCGAATCCCGCCCCTCTGGCCGGCT
776 CGGCAG--TACGAGAGGGGGACATGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGCT
* *
16823547 GAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
838 GAGCG-CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16823608 GCATACGGAGTTCATTCTCAGCCTAAGATCAGATCGGATCGAGGGTTACGGA-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTAC-GACAGCACATGCTGG
* * * *
16823672 GCTCGGGCATGTGCTGGTGCCGCATTGTTCTTC-ACGGGGGCACCATCGTCGAAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
16823736 GAACCTGACCGATGACATTGGGGTTTCG-GGATCTGGGGGGTCGGGGGGGTGCGCGCACATGATG
130 GAACCTGACCGACGACATTGGGGTTTCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
16823800 TGCAATGAGTGCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 TGCAATGGGTGCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16823865 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16823930 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTTT
* ** * * *
16823995 GTGGACACCAACAAAAATACAAGGGTCACATCTACTAAGTTTGGAGCCAAAAATTCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAA
* * *
16824060 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
16824125 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGC
* *
16824190 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGT
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
*
16824255 GCATCCCGTCTCTTTGGCCAGCGTTGCGCCCGCCCGCTCGCCCGCCTGCTCGTTTCATCGGTTGG
649 GCATCCCGTCTCTTTGGCCAGCGTAGCGCCCG-CCGC-CGCCCGCC-GCTCGTTTCATCGGTTGG
* * *
16824320 CTTAGGCATATGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTACAGCAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAAGAT
* ** * * *
16824385 CGGCAGTACGTATAAAGGGACATGGTTGATCCCCGGCTTTCGCATCCTGCCCCTCTGGTCGGGTG
776 CGGCAGTACG-AGAGGGGGACATGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTG
* *
16824450 AGCGCTCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
839 AGCGC-CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
16824510 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
16824575 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGCACCAT---C---G--T---CGGAG
* * * *
16824639 CATCGTCGGAGAACCTGACCGACGGCATTGGGTTTTCGACAATCGGGGGGGCCGGGGGGTGTGCG
120 CATCGCCGGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCG
*
16824704 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
185 CACATGATGTGCAATGGGTGC-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
16824769 CGAGAACTCACACCCTCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
249 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
16824834 GTGACTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGT-TCGAGTTTTTAGC
314 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCT-GAGTTTTTAGC
* * * * * * *
16824898 TGAATTTTTTTATCCATGCCAACAAAAATTCAAGGATCACGTCTACCAGGTTTGGACCCAAAACT
378 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAAT
* ** *
16824963 CCTTCCAAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAA
443 CCTTCCGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
16825028 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
508 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCC
** * * *
16825093 ATAAAAATGGCATTCATCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCA-CCTATCGA
573 ATAAAAATGGCATT-GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
* * * * * ** * *
16825157 TACACGACTTGCGCATCCCATCTCTCTGACC-GACGTAATGCCTG-C-CCG--C-CCGCTCATTT
637 TCCACGGCTTGCGCATCCCGTCTCTTTGGCCAG-CGTAGCGCCCGCCGCCGCCCGCCGCTCGTTT
* * *
16825216 CGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGAT
701 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGAT
16825260 TGGATGTTGC
Statistics
Matches: 2251, Mismatches: 242, Indels: 102
0.87 0.09 0.04
Matches are distributed among these distances:
893 6 0.00
894 774 0.34
895 17 0.01
896 3 0.00
897 1 0.00
898 5 0.00
900 4 0.00
901 39 0.02
902 834 0.37
903 5 0.00
905 1 0.00
906 47 0.02
907 2 0.00
908 2 0.00
910 3 0.00
911 1 0.00
912 1 0.00
913 77 0.03
914 393 0.17
915 36 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGCACCATCGTCGGAGCATCGCCGGAG
AACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CAATGGGTGCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAAA
TTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
ATCCCGTCTCTTTGGCCAGCGTAGCGCCCGCCGCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAAGATCGGCA
GTACGAGAGGGGGACATGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCG
CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16827025 original size:26 final size:26
Alignment explanation
Indices: 16826995--16827047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16826985 GTTGACTTAG
*
16826995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16827021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16827047 G
1 G
16827048 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16827528 original size:891 final size:889
Alignment explanation
Indices: 16825384--16830360 Score: 6393
Period size: 891 Copynumber: 5.6 Consensus size: 889
16825374 CCGACGATCG
* *
16825384 GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
16825449 ATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16825514 GTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
16825579 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
16825644 GGGCTAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* * * *
16825709 AAAAATAGAAAATGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAAGGACCACTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
16825774 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16825839 ACCCTATCAATCCACAGCTTGCGCATCCCATTTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCG--
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCC
* * ** *
16825901 -CCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGCA
520 ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** * * * * *
16825965 CTGAGGGTTGTGGCAA-CAGGATCGACAGCACACAGAGGGGTACCTGGCTGATTCTCGACTAT-C
585 CCGAGGGTTGTGG-AAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACT-TGC
* * * * * * *
16826028 GCATTCTGCCCCTCTGGCC-AGCTGAGCGCCCACACGTTCTTTTCGTTGGTTGACCTAGGCATAC
648 GCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
16826092 GAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGCA-G
712 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGG
* * * **
16826156 GTTACGTCAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCA
776 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-ACATTTTTCTTCGCCGGGGCACCA
* *
16826221 TCGTCGAAGCATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGGCGATCAGGGGAGCGAGG
840 ---TC---G--T---CGGAGAACCTGACCGACGGCATTGGGG-TCCGGCGATC---GG-G-G-GG
**
16826286 GGA
887 GCC
* * *
16826289 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
16826354 TTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
16826419 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGCCACAAAAACTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
16826484 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
16826548 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGGACCGCAAAAAGTTTAAAAAATCCTG
261 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
16826613 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTTTGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
16826678 ATTTACAAGCCATAGAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
16826743 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCTCCCGCAC
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-C
* * * *
16826808 ACCCGCTCGTTTCATCGGTTGGCTTAGGCGTGCGGAGTTCATTCCCAGTCTAACATCAGACCAGA
520 ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** *
16826873 CCGAAGGTTGTGGAAGCAAGATCGACAGCACGTAAAGGGGGACCCGATTCGATCCCTGACTTGCG
585 CCGAGGGTTGTGGAAGCAAGATCGACAGCACGTAGAGGGGGACCCG-GCCGATCCCCGACTTGCG
* * * *
16826938 CATCCCGTCCATCTGGCTGACTGAGCGCCCGCA-GCCTCGTTTCATGGGTTGACTTAGGCATACG
649 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
16827002 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
713 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
16827067 TACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGCCGGGGCACCATC
778 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGCCGGGGCACCATC
*
16827132 GTCGGAGAACCTGACCGACAGCATTGGGGTCCGGCGATCGGGGGGGCC
842 GTCGGAGAACCTGACCGACGGCATTGGGGTCCGGCGATCGGGGGGGCC
* * * * *
16827180 AGGGGGTGTGCGCACATGATGAGCGATAGGTGCTAGTAGTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
16827245 CTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16827309 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACATC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
16827374 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
16827439 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTG
261 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
16827504 AAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
16827569 ATTTACATGCCATAAAAATGTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
16827634 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG---GCCA
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCA
* * * ** *
16827692 CCCGTTCATTTCATCGATTTTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
521 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* *
16827757 CGAGGG-T-T---------AT-GACAGCACGCAGAGGGGGACCCGGCCGATCCCC-AGCTTGTGC
586 CGAGGGTTGTGGAAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGC
* * *
16827809 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTTGGCATACGGA
650 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
16827874 GTTCATTTCTAGTCTAAGCATCCGGAATTCATTCCCAGTCTCAGATCGGACCGGACCGAGGGTTG
715 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
* * * * * *
16827939 CGGCAGCACATGCTGGGCTTGGGCAGGTCCTGGTGCCGCATTTTTCTTCGGCGGGGCACCATCGC
780 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGCCGGGGCACCATCGT
* * *
16828004 CGGAGCATCGTCGGAGACCCTGACCCGCGACATTGGGGTTCCGACGATCGGGGGGGCC
844 CGGAG-AAC--C--TGA-CC-GA--CG-G-CATTGGGG-TCCGGCGATCGGGGGGGCC
* * *
16828062 GGGGGGTGTGCGCACATGATGTGCGATGGCTGGTGGTACTTGGCCCGTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
16828127 CACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCTA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16828192 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
16828257 GAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAGTACAAGGATCATGTCTACCAAGTTTA
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * * * * **
16828322 CGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAACTTTGGAAAATCGTG
261 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
16828387 AAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
16828452 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC-AAA---A-C--CC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16828510 A-CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCCTCCGGCC
456 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CCGC-CC-GCC
* * *
16828574 GGCGTAGTGCCCGCCCGCTCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGT
516 --C-----G-CCACCCGCTCG----TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** *
16828639 CTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACC
569 CTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCC
* * * * *
16828704 GATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTT
634 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
16828769 GACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
699 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
16828834 ACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTC
764 ACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTC
* * * * * * *
16828899 GTCGGGGGACCATCCCCGGAGCATCATCGAAGAACCTGATCGACGGCATTAGGGTTCCAGCTATC
828 G-CCGGGG--CA----C----CATCGTCGGAGAACCTGACCGACGGCATT-GGGGTCCGGCGATC
16828964 GGGGGGGCC
881 GGGGGGGCC
*
16828973 GGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
16829038 CCTCATGAAACCTCGAGAGCTCACAACCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTCCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
16829103 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16829168 CGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTATCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** * **
16829233 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATATCGAACCGCATAAAGTTTTGAAAATCGT
260 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* * *
16829298 GAAAAATAGAAAACGAGTCGTCTTGTCATGAAAGTTCACGTGAAGGCTT-AGGCACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
16829362 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAACCCCACCCAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
16829427 CACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGACCGACGTAGTGCTCGCCCGCCCACC
455 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * * * *
16829492 TGCCCGCTCGTTTCGTCGATTGGCTTAGGCACACGAAGTTCATTCCTAGTCTAAGATCAGACCGG
520 -ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * ** *
16829557 ACCAAGGGTT-TCGACAGTAGGATCGGCAGCACATAGAGGGGGACTTGGCCGATCCCCGGCTTGC
584 ACCGAGGGTTGTGGA-AGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGC
* * * *
16829621 GCATCTCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACG
648 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
16829686 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
713 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *** * *
16829751 TACGGCAACACATGTTGGGCTCAATCATGTGCTAGTGCAGCATTTTTCTTCGCCGGGGAACCATC
778 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA-CATTTTTCTTCGCCGGGGCACCATC
* * * * * * *
16829816 GCCGGAGAACTTGACCAATGGCATTGGGTTCCGACGATCGGGGCGGCC
842 GTCGGAGAACCTGACCGACGGCATTGGGGTCCGGCGATCGGGGGGGCC
* * * *
16829864 GGGGGGCTGTGCGCGCATAATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATC
1 GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
16829929 CCTCATCAAACCTCGAAAACTGACACCCCCTTAAAGAACATTTGAGATTTTACTGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
16829994 AGTAGCCATTAAAGTGTCTGAAATAGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
16830059 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** *
16830124 GGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACC-CTGAAAAGTTTTGAAAATCA
260 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCG
*
16830188 TGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
16830253 GAATTTGTAAGCCATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCCTAAACCCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16830318 CCACACTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCC
454 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
16830361 CCCTATCCCT
Statistics
Matches: 3569, Mismatches: 411, Indels: 197
0.85 0.10 0.05
Matches are distributed among these distances:
869 1 0.00
870 185 0.05
871 24 0.01
872 2 0.00
873 1 0.00
875 47 0.01
876 5 0.00
877 2 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 9 0.00
882 101 0.03
883 383 0.11
884 3 0.00
887 4 0.00
890 151 0.04
891 672 0.19
892 133 0.04
893 1 0.00
894 3 0.00
895 8 0.00
896 1 0.00
897 10 0.00
898 24 0.01
899 56 0.02
900 2 0.00
901 2 0.00
902 9 0.00
903 263 0.07
904 248 0.07
905 232 0.07
906 4 0.00
907 11 0.00
908 93 0.03
909 169 0.05
910 4 0.00
911 278 0.08
912 347 0.10
913 2 0.00
914 5 0.00
915 5 0.00
916 4 0.00
917 2 0.00
918 5 0.00
919 44 0.01
921 2 0.00
922 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (889 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCA
CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTGTGGAAGCAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCA
TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCACATTTTTCTTCGCCGGGGCACCATCGTCG
GAGAACCTGACCGACGGCATTGGGGTCCGGCGATCGGGGGGGCC
Found at i:16827913 original size:26 final size:26
Alignment explanation
Indices: 16827865--16827914 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16827855 GTTGACTTTG
* * *
16827865 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
16827891 GCATCCGGAATTCATTCCCAGTCT
1 GCATACGGAATTCATTCCCAGTCT
16827915 CAGATCGGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:16828806 original size:26 final size:26
Alignment explanation
Indices: 16828776--16828828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16828766 GTTGACTTAG
*
16828776 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16828802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16828828 G
1 G
16828829 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16829715 original size:26 final size:26
Alignment explanation
Indices: 16829679--16829731 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16829669 GATGACTTAG
16829679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16829705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16829731 G
1 G
16829732 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16830652 original size:438 final size:439
Alignment explanation
Indices: 16829916--16830798 Score: 1453
Period size: 438 Copynumber: 2.0 Consensus size: 439
16829906 GGCCCTCATA
*
16829916 TTGGCCCCCTATCCCTCATCAAACCTCGAAAACTGACACCCCCTTAAAGAACATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
* *
16829981 CTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACCCTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
* *
16830046 ATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
131 ATCTCGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* * * *
16830111 GTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCCTGAAAAG
196 GTCTACCAAGTTTCGGCCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAG
* *
16830176 TTTTGAAAATCATGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
261 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** * *
16830241 GGACCATTGTATGAATTTGTAAGCCATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
*
16830306 TAAACCCACCTACCACACTATCGATCCATGGCTTGCGCATCCCGTCTCT
391 TAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
16830355 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
* *
16830420 CAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
* * *
16830484 ATCTCGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAT
131 ATCTCGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* * * *
16830549 GTCTACCAAGTTTCGGCCCCAAACTACTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
196 GTCTACCAAGTTTCGGCCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAG
*
16830614 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAG
261 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
16830679 GGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* ** *
16830744 TAAACCCACTTATGACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
391 TAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
16830793 CTGGCC
1 TTGGCC
16830799 GACGTAGTGC
Statistics
Matches: 410, Mismatches: 34, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
438 307 0.75
439 103 0.25
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (439 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
ATCTCGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTCGGCCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAG
TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCT
Found at i:16831908 original size:26 final size:26
Alignment explanation
Indices: 16831878--16831930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16831868 GTTGACTTAG
*
16831878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16831904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16831930 G
1 G
16831931 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16833704 original size:26 final size:26
Alignment explanation
Indices: 16833665--16833717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16833655 GTTGACTTAG
16833665 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
* * *
16833691 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
16833717 G
1 G
16833718 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:16834093 original size:896 final size:888
Alignment explanation
Indices: 16830355--16834101 Score: 4973
Period size: 894 Copynumber: 4.2 Consensus size: 888
16830345 TCCCGTCTCT
16830355 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16830420 CAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
16830484 ATCTCGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCAC
* * * *
16830549 GTCTACCAAGTTTCGGCCCCAAACTACTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
195 GTCTACC-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * * *
16830614 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAG
259 TTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
16830679 GGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
* **
16830744 TAAACCCACTTATGACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
389 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
16830809 CCGCCCACCCGCCCGCACACTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
454 CCGCCCGCCCGCCCGC-CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** ** * * * *
16830874 AAGATTGGACCAGACTGAGGGTTGCGACAGCAGGATC-GATAGCATGCAGAGGAGGACCCGATCG
518 AAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAG-CAGCATGCAGAGGAGGACCCGACCG
* * * *
16830938 ATCCCCAGCTTGCGCATCTCG-CCCTCTAGCCGCCTGAGCGTCCGCACGCTCGTTTCGTGTGTTG
582 ATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTG
* * * **
16831002 ACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATACGGAGTTCACT-CCAATCTAAGATTGGA
647 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
16831066 TCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCACATTTTTCTTTG
712 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCGCATTTTTCTTCG
* * * * ** *
16831131 TCGGGACACCATCGCTGGAG---C--A---T--CATCGGAGAACCTGA-G--C----AGGCCGGG
777 TCGGGGCACCATCGCCGGAGAACCTGACCGTAGCATTGGGGTTCC-GACGATCGGGGGGGCC-GG
**
16831179 GGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
840 GGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
16831228 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCTCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16831293 CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
16831358 AACTTCTACACTTCCAGTTTTTAACTAAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCAC
*
16831422 TTCTACCGAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
195 GTCTACC-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * * * *
16831487 TTTCCAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGGAACTTCACGTGAAGGCTCAAG
259 TTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
16831552 GGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGTACATAGAAA-AGTGAAGATGTGC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA-TGAAGATGTGC
* *
16831616 CTAAACCCAACTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTG
388 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * *
16831681 CCCGCCCGCCCG--C-CCACTCATTTGGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
453 CCCGCCCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * *
16831743 AAGATCAGACCAGACTGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGTGGACCCGACTGA
518 AAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAGCAGCATGCAGAGGAGGACCCGACCGA
** * * * * * *
16831808 TCCCCGTTTTACGCATCCCGCACCTCTAGTCGGCTGAGTGCCCGCACGCTTGTTTCATAG-GTTG
583 TCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GTGTTG
* *
16831872 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
647 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
16831937 CCGGACCAAGGGTTG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGCACCGCATTTTTCTTCG
712 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCGCATTTTTCTTCG
* * * *
16832001 -C-CGG-AGCATCACCGGAGAACTTGACCG-ACGACATTGGGGTTCCGACGATCGGGGGGGCCGA
777 TCGGGGCACCATCGCCGGAGAACCTGACCGTA-G-CATTGGGGTTCCGACGATCGGGGGGGCCG-
**
16832062 GGGGGCATGCGCACATGATGCGC-ATTGGGTGCTGGTACTTGGCCCTTATA
839 GGGGGTGTGCGCACATGATGCGCGA-TGGGTGCTGGTACTTGGCCCTTATA
*
16832112 TTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
16832177 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
16832242 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAATACAAGGATCAC
* * *
16832307 GTCTACCAGGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG
195 GTCTACCA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* *
16832372 TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAG
259 TTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
16832437 GGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGGTTTGCC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
* * * *
16832502 TAAACCCACCTACCACCGTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGT--
389 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
16832565 --GCCCGCCCGCCCG---TTTGTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTA
454 CCGCCCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *** * *
16832625 AGATCAAACCGGACCAAGGGTTGTGGTAGCAGGAT-AGGCAGCACATAGAGGGGGACCAG-CCGA
519 AGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCA-GCAGCATGCAGAGGAGGACCCGACCGA
* * * * * *
16832688 TCCTCGGCTTGCGCATCCCGCCCCTCT-GATCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
583 TCCCCGGCTTGCGCATCCCGCCCCTCTAG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTG
* * *
16832752 ACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGA
647 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
16832817 CCAGACCGAGGGTTAC-AGCAGCACACGATGGGCTCGGGCATGTGCTGGTGTCC-CATTTTTCTT
712 CCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCAGGCATGTGCTGGT-ACCGCATTTTTCTT
* * ** * *
16832880 CGTCGGGGCACCATCGCCAGAGCATCGCCAGAGAACTTGACTGGCGGCATTGGGGTTCTGGCGAT
775 CGTCGGGGCACCAT---C---GC--CG---GAGAACCTGAC-CGTAGCATTGGGGTTCCGACGAT
* * * * * *
16832945 CGGGGGGGCTGAGGGGTGTGTGCACATGATGTGCGATGGGTGTTGGTACTTGGTCCTTATA
828 CGGGGGGGCCGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATA
*
16833006 TTGGCCCCCTATCCCTCATCAAACC-CCATGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
1 TTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
16833070 ACAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
65 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
16833135 AATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCA
130 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAATACAAGGATCA
**
16833200 CGTCTACCTAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
194 CGTCTACC-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * * * *
16833265 GTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTACCAAGAAACTTCACTTGAAGGCTTAA
258 GTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * **
16833330 GGAACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
323 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
* * * *
16833395 CTAAACCCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGTCTTTCTGGCTGACGTAGTG
388 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G
* *
16833460 CTCGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCC
451 -T-GCCCGCCCGCCCGCCCGCC-ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
*
16833525 AGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAGCAGCATATGGA-AGG-GGACC
513 AGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAGCAGC--ATGCAGAGGAGGACC
** * * * *
16833588 CGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCTCGCACGCTCGTTTTGT
576 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
16833653 GTGTTGACTTAGGCATACGGAATTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAG
641 GTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* *
16833718 ATCAGA-CAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTTCTGGTGCCGCATTT
706 ATCAGACCA-GACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCGCATTT
*
16833782 TTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGGGGG
770 TTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACC-GTAGCATTGGGGTTCCGACGATCGGGGG
*
16833847 GGCCGGGGGGTGTGCACACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATA
834 GGCCGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATA
*
16833902 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16833967 CAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16834032 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAATATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA-ATACAAGGATCAC
*
16834097 ATCTA
195 GTCTA
16834102 AGATTGGACC
Statistics
Matches: 2508, Mismatches: 284, Indels: 141
0.86 0.10 0.05
Matches are distributed among these distances:
867 10 0.00
868 1 0.00
869 111 0.04
870 124 0.05
871 27 0.01
872 2 0.00
873 375 0.15
874 48 0.02
877 2 0.00
878 9 0.00
879 2 0.00
880 125 0.05
881 137 0.05
882 3 0.00
883 5 0.00
884 208 0.08
885 255 0.10
886 3 0.00
887 1 0.00
890 1 0.00
892 2 0.00
893 2 0.00
894 452 0.18
895 45 0.02
896 268 0.11
897 2 0.00
899 2 0.00
901 2 0.00
902 13 0.01
904 1 0.00
906 87 0.03
907 179 0.07
908 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (888 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACG
TCTACCAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
TCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
GCCCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAGCAGCATGCAGAGGAGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTGACTT
AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCGCATTTTTCTTCGTCGG
GGCACCATCGCCGGAGAACCTGACCGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
TGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATA
Found at i:16834994 original size:26 final size:26
Alignment explanation
Indices: 16834951--16835003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16834941 GTTGACTTAG
*
16834951 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
*
16834977 GCATACGAAATTCTTTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16835003 G
1 G
16835004 ATCAGAGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:16835879 original size:26 final size:26
Alignment explanation
Indices: 16835843--16835895 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835833 GTTGACTTAG
16835843 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16835869 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16835895 G
1 G
16835896 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16836507 original size:901 final size:903
Alignment explanation
Indices: 16834098--16857465 Score: 23769
Period size: 901 Copynumber: 26.0 Consensus size: 903
16834088 AAGGATCACA
* * * * * **
16834098 TCTAAGATTGGACCGGACCGAGGGTTACGGCAGTACATGCTAGGCTCGGGGATGTGCTGGTGCTA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * *
16834163 CATTTTTCTTCGCCAGGGCACTATCGCCGGAGCATCACCGGAGAACTTGATCGGCGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * *
16834228 TTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGTTATGTGATGGGTGCTGGTACTTGG
131 TTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
16834293 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
16834358 AGATTTTACAGGTTTGCTGCCAGTA-CCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAAT
259 AGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
16834422 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATAC
323 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** * * * **
16834487 AGGGATCGTGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAAGTTAAAAAAATATCGAAC
388 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * ** *
16834552 CGCAACAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
453 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * **
16834617 AGGCTTAAGAGACCATTGTATGAATTCACAAGCCATAAAAATGGCGTTGGCACATAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
16834682 AGATATGCCTAAACCGACCTACC-CCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
16834746 GCGTAGTGCCCGCCCGCCCGCCCG-T---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
648 GCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * * ** *
16834807 TCCTAGTCTAAGATCTGGCCGGACTGAGGGTTGCAGCAAAAGGATCCGCAGCACGCAGAGGGGGA
713 TCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* ** * * *
16834872 CCCGGTTGATCCCCTACTTGCGCATCCCGCACCTCTGGTCGGCTGAGCGCCTGCACGCTCGTTTC
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
16834937 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAATTCTTTCCCAG
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * *
16834998 TCTAAGATCAGAGTGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * **
16835063 CATTTTTCTTCACCGGGGCACCA---T-----CA---CCGGAGAACATGACCGACAACATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16835117 TTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGC
131 TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16835182 CCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16835247 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
16835312 TCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCACGCCAACAAAAATACAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
16835377 GGATCACGTTTACCAAGTTTGGGCCCAAACCTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
390 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
** * *
16835442 TAAAAAGTTTCGCAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAG
455 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16835507 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATT-GCACACAGAAATATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
16835571 ATCTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTCGCGCATCCCGTCTCTCTGGCCGGC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
16835636 GTAGTGCCCGCCCGTCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
650 GTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * * *
16835701 CCAGTCTAAGATTGGACTAGACTGAGGGTTACAGTAGCAAGATCAGTAGCATGCAGAGGGGGACT
715 CCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC
*** * * *
16835766 CAACCGATCCCCGGCATGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGGACGCTCGTTTCGT
780 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
16835831 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
845 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16835890 TCTAAGATCGGACCGGACCGAGGGTTACGGCTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * *
16835955 CATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCGAAGATCCTGACCGACGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16836020 TTCCGACGACCGGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCC
131 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* ** *
16836085 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGGACCCCTTTAAAGAGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16836150 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTCCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
16836214 CACAAAATCTTGTACACATCGGGTTTTTAGCTAAATTTTTTTGTACATGCCAACAAAAATACAAG
326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * ** * *
16836279 CATCATGTCTACCAAGTTTGGGGAGAAAACTCCTTCCGAAAAAATTTTACAAAATCCCGAACCGA
391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* *
16836344 AAAAAGTTTCAAAAATCAG-GGAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAG
456 AAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16836408 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATT-GCACACAGAAATATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
16836472 ATCTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTCGCGCATCCCGTCTCTCTGGCCGGC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
16836537 GTAGTGCCCGCCCGTCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
650 GTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
16836602 CCAGTCTAAGATCAGA-TCGAATTGAGGGTTGCGGCAACAAGATCGGCAGCACACAGAGGGGGAA
715 CCAGTCTAAGATCAGACTAG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG-A
*** * * * * * * *
16836666 CCCCACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCAGTTGAGCACCCGCACGTTCATTTC
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
16836731 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAA
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * *
16836792 TCTAAGATCAGACAGGACCAAGGGTGGCAGCGGCACATGCTGGGCTCGAGCATGTGCTGGTGCTG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* **
16836857 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGTGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
16836922 TTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TGGC
131 TTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
16836985 CCTTATATTGGCCCCCCATGCCC-CATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTG
195 CCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16837049 AGATTTTACAGGTTTGCTGCCAGTAGCTC-TTAAAGTTTCTGAAATGGGGACACGTTTTTCAAAT
259 AGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
16837113 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTCCTTGCCAA-AAAAATAC
323 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
16837177 AAGCATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
388 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
16837242 CGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTAATGTGA
453 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
16837307 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
16837372 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
16837437 GCGTAGTGCCCGCCTGCCCG--C-C-CG--C---TCGTCGGTTGGCTTAGGCATACGGAGTTCAT
648 GCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * * * * *
16837493 TCCCAATCTAAGATCAGAC-CGGCTGAGGGTTGTAGCAGCAAGATCGGTAGCATGCAGAAGGGGA
713 TCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * *
16837557 CCCGATCGATCCTCGACTTACGTATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTC
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
16837622 ATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATT-CCAG
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * *
16837682 TCTAAGATCAGACTGGACCGAGGTTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTACTG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** *
16837747 TATTTTTCTTCGTCGGGGCACCATC-TCCGGAGCATCATCGAAGAA-CTGACCGACGGCATTGGG
66 CATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
**
16837810 GTTCCGACGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
130 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
16837875 CCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16837940 GATTTTACAGGTTTCCTGCCAGTAGCGATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATG
16838005 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * *
16838070 AGCATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTACAAAATCTCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * *
16838134 GTAAAAAGTTTTAAAAATAAG-GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAGGTGA
454 GTAAAAAGTTTCAAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * ** * *
16838198 AGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAATGGCATTTTCATGAAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * *
16838263 AGATGTACCTAAACCCACCTACCACGCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGTCG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * ** *
16838328 GCGTAGTTCCCACCCGCCGTCGTTCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
648 GCGTAGTGCCCGCCCGCC--CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * *
16838393 ATTCCCAGTATATGATCCGACCAGACCGAGGGTTGC-CTAGCAGGATCGACAGCATGCAGAGGGG
711 ATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * * * *
16838457 GACCCAGTCGATCCTCGGCTTCCGTATCCCGCCCTTCTGGCCGGTTGAGCGCCCGTACACTTGTT
776 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
16838522 TCATTGGTTGGCTTAGACATAC-GAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
841 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** ** *
16838584 TCTAAGATTGGACCAGACCGAGGGTTATGATAGCACATGCTGGGCTCGGGCATGTACTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
16838649 CATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGAACCTGGCCGGCGGCATTGTGC
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* ** * *
16838703 TTTCGGTGATCGGGGGCGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
131 TTCCGACGATCGGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
16838768 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
16838833 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
16838898 CCACAAAATCTTGTACACTTCGTGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACGA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** *
16838963 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCTTGAATCG
390 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * *
16839028 AAAAAAGTTTCAAAAATCATGAAAAATAGAGAATGAGTCGTCTTGCCATGAAACTTCATGTGAAG
455 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16839093 GCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
16839158 ATGTGCCTAAACCCACCTACCACACTATCGATCCACTGCTTGCGTATCCCGTCTCTCTGGCCGGC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
16839223 GTAGTGCCTGCCCGCCCG-CCGCTCGCTTC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
650 GTAGTGCCCGCCCGCCCGCCCGCTCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * *
16839286 CCTAGTCTAAGATCAGA-TCAGACCAAGGGTTGCGGCAGCAGGATCGGCAACACACAGAGGGGGA
714 CCCAGTCTAAGATCAGACT-AGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * *
16839350 CCTGGTCGTTCCCCGGCTTGCGCATCCCGCCCCTTTAGCCGGCTGAGCGCCCGCACGCTCGTTTC
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
16839415 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** *
16839457 TC--AGA-CGGA----ACCGAGGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTG-TG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
16839514 CATTTTTCTTGGCCGGGGCACCA---T-----CA---CCGGAGAACTTGACCGGCAGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16839568 TTCCGAC-ATCGGGGGGGCCGGAGGGGGTTGTGCGCACATAATGTGCGATGGGTGCTGGCACTTG
131 TTCCGACGATCGGGGGGGCC-G-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
16839632 GCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAAGAGCATTT
193 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
16839697 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-CATTTTTTCAAA
258 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAA
* * * *
16839761 TGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTTTGCACGCCAAAAAAAATA
322 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
16839826 CAAGGATCACGTCTACAAAGTTTGGGGCCGAAACTCCATCCAAAAAAATTTTAGAAAATCCCGAA
387 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * ** *
16839891 CAGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCAACTTGCCATGAACCTTCACGTG
452 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
16839956 AAGGCTTAAGGGACCATTATAAGAATTTACAAGCCATAAAAATGGCACTGGCACGTAGAAATATG
517 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
16840021 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATGCCGTCTCTCTTGCC
582 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
16840086 TGCGTAGTGCCCGCCCGCCCGTCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
647 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * *
16840151 TTCCCAGTCTAAGATTGGACCAGACTTAGGGTTGTGGTAGCAGGATCAGCAGCA-GCAGAGGGGG
712 TTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
** * * * * * *
16840215 ACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCCCGCACACTCATTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
16840280 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * * *
16840342 TCTAAGATCGGATCAGACCGAGGATTGTGGCAGCACTTGCTAGCCTCCGGCATGTGCTGGTGCCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
16840407 CATTTTTCTTCGTCGGGGCACCATTGCCAGAGAATCGCCGGAGAACCTGACCTG-TGGCATTGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGG
*
16840471 GTTCC-AGCGATC-GGGGGCCCGGGAGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTT
130 GTTCCGA-CGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTT
* ** *
16840533 GG-CCTGTATAATATCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCAT
192 GGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *** **
16840597 TTGAGATTTTACAAGTTTGCTGTTTGTAGCCATTAAAGTGTCTGAAATGGGGA-TTTTTTTTCAA
256 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
** * * *
16840661 ATGGTCACTGAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACGTCAACAAAAAT
321 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * **
16840726 ACATGGATCACGTC-ATCCAAGTTTGGTGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTGG
386 ACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** *
16840790 AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
450 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
16840855 TGAAGGCCTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGTATTGGGATGCAGAAATA
515 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
16840920 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCAGCCCGTCTCTCT-G
580 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * ** * * **
16840984 CCGACGTAGTGCCCGCCCGCCCGCCCGCCCAATTGTTTCGTCGATTGGCTTAGGCATACAAAGTT
645 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
16841049 CATTCCCAGTCTTAGATCAGA-TCGGAATGAGTGTTGTGATAGCAGGATCGGCAGCACGCAAAGT
710 CATTCCCAGTCTAAGATCAGACT-AGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
* * * * * *
16841113 GGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGTACGCTCG
774 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
16841178 TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAG--T---C-TA--G-G---A-T--C-G
839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** **
16841227 -----GATC--A--GG-CCAAGGGTTACGAAAGCACATGCCAGGCTCGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * **
16841282 CATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTC-GAGGAACCTGACCGGTGG-ATTGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA-GAACCTGACCGACGGCATTGGG
16841345 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG-GATGGGTGCTGGTACTTGG
130 GTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
16841409 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
16841474 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** * *
16841539 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACACCAAAAAAAAAACA
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
16841604 AGGATCACGTTTACCAAGTTTGGGGCTAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * * *
16841669 GCAAAAA-TATTTAAAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGA
454 GTAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*** *
16841733 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATAAGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
16841798 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCTG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * ** * *
16841863 GCGTAGAGCCCACCCGCCCGCTTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
648 GCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** ** * * *
16841928 TCGAAGTCTAAGATCAGACCGGA-TCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGG
713 TCCCAGTCTAAGATCAGACTAGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
16841992 AGCCGGTCGATCGCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
16842057 CATAGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAACATAGGGAG-TCATTCCCAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * *
16842118 TCTAAGATCAGACCAGATCGAGGGTTCCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * * *
16842183 TATTTTTCTTCACCGGGACTCCATCGTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * *
16842248 TTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTCGAC
131 TTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
16842313 CCTTATACTGGCCACTTATCCCTCATCAAACCTC-AGGAACTCACA-CCCC-TAAAGAGCATTTG
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTG
*
16842375 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
16842440 GTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAGTTTTTTTTTGCATGCCAACAAAAATACA
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
16842505 AGGATCACTTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAGATTTTAAAAAATCCCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
16842570 GTAAAAA-TCTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
454 GTAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
16842634 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * *
16842699 AGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATCCCATCTCTCTGGTCG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
16842764 GCGTAGTGCCCGCCCG-CC-CAC-C-CGCTAGTTTCGTCGGTTGCCTCAGGCATATGGAGTTCAT
648 GCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
16842825 TCCTAGTCTAAGATCGGA-TCGGA-TAGATGGTTGCGGTAGTAGGATCAGCAGCACGTAGAGGGG
713 TCCCAGTCTAAGATCAGACT-AGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
16842888 GACCTGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTTGTT
776 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
16842953 TCGCGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGGAGTTCATTCTC-G
841 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * * * * *
16843015 TCTAAGATCAGCCCAAACTGAGGGTTGCAGCAGCACTTGCTGGGCTCGAGCATGTGCTGTTGTCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
16843080 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGTCCGGCGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16843145 TTCCGACGATCGGGGGGGGCCGGGGGGTGTGCGCATATGATGTGTGATGGGTGCTGGTACTTGGC
131 TTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
16843210 CTTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCATTTAA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16843275 GATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
16843340 TCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
16843405 GGATCACGTCTACCAAGTTTAGGGCCAAAACTCTTTCCGAAAAGATTTTAAAAAATCCCGAACCG
390 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
16843470 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
455 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16843535 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATTGGCATGCAGAAAAATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
16843599 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGACCGAC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
16843664 GTAGTGCCCGCCCGCCCGCCCGC-CTGCTCATTTCGTCGGTTGGTTTAGGCATACGGAGTTCATT
650 GTAGTGCCCGCCCGCCCGCCCGCTC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * *
16843728 CCCAGTCTAAGATCGGA-TCAAACCAAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGA
714 CCCAGTCTAAGATCAGACT-AGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
16843792 CCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCTGCTGAGCGCCTGCACGCTCGTTTC
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* ** * *
16843857 GTGGGTTGACATAGGCATATTGAGTTCATTCCCGGTCTAAACATACGGAGTTCATTCCCAG
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
16843918 TCTAATATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * * * *
16843983 CTTTTTTCTTCACCGGGGCACCATCGTTGAAGCATCGTCGGAGAACCTGACTGGCGACATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16844048 ATCCGACGACCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
131 TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16844113 CCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
16844178 GATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTGTGAAATGGGGACACGTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16844243 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
16844308 GGATCACGTCTACCAAG-TTGGGGCGAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
390 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
*
16844372 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAG
455 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
16844437 GCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAATTATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
16844502 ATGTACCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGCCGGC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
16844567 GTAGTGCCCGCCCACCCGCCCG-T---TCGTTTCGTCGATTGGCTTACGG-ATACGGAGTTCATT
650 GTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTA-GGCATACGGAGTTCATT
* * * * *
16844627 CCTAGTCTAAGATCAGA-TCGGA-TCGAGGGTTGCGGTAGCAGGAACGGCAGCACGTAGAAGGGG
714 CCCAGTCTAAGATCAGACT-AGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
** * *
16844690 ACCCAATCGCTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
16844755 CGTGAGTTGAC-T-----TA--G-G--CA----CA--C--A--A-A---A-TTCATTCCTAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
16844791 TCTAAGATTGGACCAGACCGAGGTTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
16844856 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGT
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
16844921 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
131 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
16844986 CTTACATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAA
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
16845051 ATTTTACACGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
16845116 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAATACA
326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACA
* * *
16845181 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAACTCCCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
**
16845246 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
454 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
16845311 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--C-G---TATGAA
519 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
16845370 GATGTGCCTAAACCCACCTGCCACCCTATCGA-CTCACGGCTTGTGCAT-CCGATCTCTCTGGAC
584 GATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCATCCCG-TCTCTCTGGCC
** ** *
16845433 GATGTAGTGCCCGCCCGCCCGCCCG-T---TCGTTTAATCGGTTGGCTTAGGCATACAGAGTTCA
647 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * ** * * *
16845494 TTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGACAGCAGGATCAGTAGCACGCAAAGGGGG
712 TTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
** * * * * **
16845559 ACCCACTCGATCCCCAGCTTGCGCATCCCGCCCTTTTGGCCGGTTGAGCGCCCGCGTGCTCGTTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
16845624 CATGGGTTGACTTAGGCATATGGAGTTCATTGCCAGTCCAAGCATACGGAGTTCATTCCCAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * *
16845686 TCCAAGATCAGACCGGACCGAGGGTTATGACAGCACATGCTAGGCTCGGGCATGTACTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
*
16845751 CATTTTTC-TCTGTCGAGGCACCA---TC---G--T---CGGAGAACCTGACCGACGGCATTGGG
66 CATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* *
16845804 GTTCCGACGATCGGGCGGGCCGGGGGGGTGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
130 GTTCCGACGATCGGGGGGGCC----GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
16845869 TTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA-AGCCCCCTTAAAGAGC
190 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGC
* * *
16845933 ATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTCTTTC
254 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16845998 AAATGGTCACAAAATCTTGTACACTTCGAG-CTTTAGCTAAATTTTTTTGTGCATGCCAACAAAA
319 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
16846062 ATACAAGGATCACTTCTACTAAGTTTGGGACCAAAACTCCTTCCGAAAAGATGTTAAAAACTCCC
384 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
16846127 GAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
449 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
** **
16846192 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCACATAGAAAT
514 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * * * *
16846257 ATGGAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGACTTACGCATCCCGTCTCTCTG
579 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * *
16846322 GCCGACGTAATGCCCGCTCGCCCGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGT
644 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * * *
16846387 TCATTCCCAGTCTAAGGTCAGACCAAACTGACGATTGCTGTAGCAAGATCAGCAACACCCAGAGG
709 TCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
* ** * * *
16846452 GGGACCCGGCCGATCCCTTGCTTGCGCATCGCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCG
774 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
16846517 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
16846582 TCTAAGATCAGAACGCACTGAGGGTTGCGGCAGCACATGATGGGCTCGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *
16846647 CATTTTTC-T--T--------CA-C--CGGAGCATCGCTGGAGAACCTGACCGACGACATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * *
16846698 TTTCAACGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
131 TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
16846763 CCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCTTTAGAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
16846828 GATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
16846893 TCAAAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * * * * *
16846958 GGATCACATTTACCAAGTTTGGGTCCAAAATTCCTTTCGAAAAAATTCTAAAAGATCCCAAACCG
390 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * *
16847023 CAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAG
455 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
16847088 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAACATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
16847153 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGAC
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
16847218 GTAGTGCTCGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
650 GTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * *
16847279 CTAGTCTAAGAT-TGAACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCACCCAGAGGGGGAC
715 CCAGTCTAAGATCAG-ACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * *
16847343 CCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGATCGTTTCA
779 CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
** * *
16847408 TACGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
844 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * * * *
16847468 TCTAAGATCGAATTGGACCAAGGGTTGTGGCAGCACATGCTAGGTTCGGGCATGTGCCGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * ** * ** * ** * *
16847533 TATTTTTCTTCGTTGAGGCACCATCACCGGAGCAT--ACGGAGTTCATTTCC-A--GC-CT-AGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * * ** * * * * * *** *
16847591 ATCAGACCAGACCGAAGGTTG-C----GGT-AGCACATACTG-GGCTCCGACATGTGCTGGTGC-
131 TTCCGA-C-GATCG-GGGGGGCCGGGGGGTGTGCGCACA-TGATG-TGCGATGGGTGCTGGTACT
** * * * * *** * * * * * ** *
16847648 T-GCATTTTTCTTCGTCGGGTCA-CCATCATCGGAGTGTCACC-GGAGAACCTGATCGGCGGCAT
191 TGGCCCTTATATTGGCCCCCT-ATCCCTCATC--A----AACCTCGAGAA-CTCA-C-ACCCCCT
** ** * * ***** * * ***
16847710 T-GGGTTTCCAATGATCGGGGGGGCCGAGAGGTGTGC-GCACA-T-G--ATGTTCGGTGGGTGCT
246 TAAAG--AGC-AT--T--TGAGATTTTACAGGTTTGCTGC-CAGTAGCCAT-TAAAGT--GT-CT
* * * * ** ** * **
16847769 GGTACT-TGG-CCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
299 -GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA----CTT-
* ** * ** **
16847832 AAGAGAATTT-G-AG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGA-AATGGGGA-
345 -CGAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T-GCCAACAAA--AAT-ACAA---GGAT
* * ** * * * * * * ***** * * **
16847892 CACTTTTTTCAA--AT-GGTCACAAAA-T-CTT--G-TACACTTTGAGTTTTTAGCTGAATTGT-
394 CACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAACCGTA
*** * ** * ** ***
16847948 -TTTG-TGCATGCCAA-C---AAAAATACAAGGATCACGTCTACCAAGT-TTGGGGTGAAGACTC
457 AAAAGTTTCA--AAAATCGTGAAAAATAGAA--A--ACGAGT--C--GTCTTGCCATGAA-A---
** *** ** ** ** * ** * ***
16848006 CTTC-CGAAAAAATTTTAA-AAACTCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATATAA
508 CTTCACG-TGAAGGCTTAAGGGA--C-C--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-GGC
* * * * ** ** ***
16848069 AATGAGTCGTCTTGCCATGAAACTTCACGTAA-A-G-GCTTAAGGGA-CCATTGTATGAATTTA-
563 ATTG-G-C-AC--G-CA-GAAA--T-ATG-AAGATGTGCCTAA---ACCCA-CCTACCACCCTAT
** * * ***** * ** * ** * **
16848129 CAAGCCATAAAAATGGCATTG-GCAT-GCAAAAATATGAAGATGTGCCTA-AACCCACCTACCAC
613 C--G--AT--CCACGGC-TTGCGCATCCCGTCTCTCTG--GCCG-GCGTAGTGCCCGCCCGCC-C
* * * * * * ** * * ** **
16848191 ACAATCGATC-CACGGCTTGCGCATCCCGTCT--CTCT-GGCCGACGTAGTGCCCACCGCCCACC
667 GC--CCGCTCGCTC-G-TTTCG--T-CGGT-TGGCT-TAGGCATACGGAGT--TCA-TTCCCAGT
*** * * ** * * ** * *
16848252 CGCCCG-CCCG-CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGAATACGAAGTTCATTCGCA-GT
720 C-TAAGATCAGACTAGACTG-AGGGTT-G-CGG-TAGC--AGGA-T-CG--G--CA---GCACG-
* ** *
16848314 CTAAGATTGGATTGGATCGATGGTTGCGGCAACAGGATCGA-CAGCACACAGAGTGGGACTGAGC
768 C--AGA--GG---GG---GA------C--C--C-GG-TCGATC--C-C-CGGCTTGCG-C--A--
* * * * **
16848378 GCCCGACCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGTTTTGACTTAGGCATACGGAG
802 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
16848443 TTCATTCCTAGTTTAAGCATACGAAGTTCATTCCCAG
867 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
16848480 TCTAAGATTGGACCAGACCGAGGGTGGCAGCAGCATATGCTGGGCTCGGGCATGTGTTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * ** * * * * *
16848545 CATTTTTCTTTG-CTGGGACACCATCGCCAGAGCAT--ACGGAGTTCAT-TCC--CAGC-CT-AG
66 CATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * * * * * * * * ** *
16848602 GAT-CG--GA-C---CGGACTGAGGGTTGCGGTAGCACAT-ACTGGGCTCTGGCATGTGCTGGTG
130 GTTCCGACGATCGGGGGGGCCGGGGGGTG-TG-CGCACATGA-TGTGCGATGG---GTGCTGGTA
** * * * * *** * * * * ** **
16848659 C-T-GCATTTTTCTTCGTCGGGTCA-CCATCGTCAGAGTGTCACC-GGAGAACCTGAC-CGGCGG
189 CTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCA-A-----ACCTCGAGAA-CTCACACCCCCT
* ** ** **** * ** * ***
16848719 CATTG-GGTTTTCGATGATCGGGGGGCCGGGGGGTGTTCGCACA-T-G--ATGTTCGGTGGGTGC
246 TAAAGAGCATTT-GA-GAT----TTTAC-AGGTTTGCT-GC-CAGTAGCCAT-TAAAGT--GT-C
* * ** ** * **
16848779 TGGTACAT--GG-CCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
298 T-G-AAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA----CT
* ** * ** **
16848841 TAAAGAGAATTT-G-AG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGA-AATGGGG
344 T--CGAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T-GCCAACAAA--AAT-ACAA---GG
* * ** * * * * * * ***** * * **
16848902 A-CACTTTTTTCAA--AT-GGTCACAAAA-T-CTT--G-TACACTTTGAGTTTTTAGCTGAATTG
392 ATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAACCG
**** ** *** * ** * * * ***
16848958 T-TTTTGCATGCCAAAAAAAAT-ACAAGGATCATGTCTACCAAGT-TTGGGGCCA-G-AACTCCT
455 TAAAAAG--TTTCAAAAATCGTGA-AA-AAT-A-G-AAAACGAGTCGTCTTGCCATGAAACT--T
** ** *** *** * ** * **** *
16849018 TTCGAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACA
511 CACG-TGAAGGCTTAAGGGA-CC---ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC-
* * ** * * ** ** * *
16849083 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAA-GAATTTACAAGCCAT
563 A-TTGGCACG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TA-AACCCACCTACCA-CCCT
*** * * *** *** * ** ** * ***
16849147 AAAAATGGCACTGGCACGTAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCAATCGATC
611 ATCGAT-CCAC-GG--C-TTG-CGCATCCCG-TCT-CTCT-GGCCGGCGTA-GTGCC---CG--C
* * *
16849211 CACAGCTTGCGCATCC-CGTCTCTCGGGCCGGCGTAGTGCCCGCCCGCCCACCTGTTCGTTTCGT
661 C-C-GC--CCGC--CCGC-TCGCTCGT---------------------------------TTCGT
* * * *
16849275 CGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTA
686 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTA
* * * * *
16849340 GTAGGATCGACAGCACGTAGAGGGGGTCCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
751 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
16849405 CCGGTTGAACGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
816 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
16849470 AAGCATACGGAGTTCATTCCAAG
881 AAGCATACGGAGTTCATTCCCAG
* * ** * * * **
16849493 TCTAAGATCAGATCGGATTGATGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGATG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * *
16849558 CTTTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGACGACAATGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16849623 TTCCGATGATCGGGGGGGCCGAGTGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTAGTACTTG
131 TTCCGACGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTG
* * * * *
16849687 GCCCCTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAATAGCATTT
193 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
16849752 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATGGGGACACTTTTTTCAAAT
258 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * ** * * *
16849817 GGTCACAAAATCTTGTACGCTTCAAGTTTCTAGCAAAATATTTTTGTAC-TAGCCAAAAAAAATA
323 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATA
* * * *
16849881 CAAGGATCACGTCTACTAAGTTTGGGGCCAAAACACCTTCCGACAAAAATTGTAAAAAATCCCAA
387 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCCCGA
* ** * * **
16849946 ACCGTAAAAAGTTTCAAAAGTTATGAAAAATAGAAAATGAGTCATCTCACCATGAAACTTCACGT
451 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
16850011 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
516 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
16850076 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
581 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * * *
16850141 CGGCGTAGTGCCCGCCCGCCTG--C-CT-ATTCGTTTCGTCGGTTGACTTAAGCATATGGAGTTC
646 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
16850202 ACTCCCAGTCTAAGATCGGACCAGACCGAGTGTTGCGGTAGC---AT-----GCA-G-A-A-TGG
711 ATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
* * ** * * *
16850255 GTCCCAG-CTGATCTTCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGTATGCTCGT
776 GACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16850319 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
840 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * *
16850383 TCTAAGATCGGGCCAGATCGAGGGTTGCGGCAGCACATACTAGGCTCGGGCATGTGCTAGTGCTG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * * *
16850448 TGTTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * ** *
16850513 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCATATGATATTTGGTGGGTGCTGG-AC-TGGCC
131 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
16850576 CTTATATTGGCCTCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16850641 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATGGGGACACTTTTTCCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
16850705 CACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACTAAAATACAAG
326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* ** * * *
16850770 GATCACATCTACCAAGTTTGGGGTGAAAACGCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGT
391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* *
16850835 AAAAAGTTT-AGAAAATCATG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
456 AAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16850898 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAAATATGAA
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG-AAATATGAA
* *
16850963 GATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGG
584 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * * *
16851028 TGTAGT------------GCCCGCACGCTAGTTTCGTTGGTTGGTTTAGGAATACAGAGTTCATT
649 CGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * ** * *
16851081 ACCAGTCTAAGATCAGA-TCAGA-TCGAGGGTTACGGGAGCAAAATCGGTAGCATGCAGAGGGGG
714 CCCAGTCTAAGATCAGACT-AGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
16851144 ACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
16851209 CATAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATGCGGAGTTCATTACCAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
16851271 TCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCAAATGCTAGGCTCGGGCATGTGCTGGTGCTG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
16851336 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCTGTCCGGCGGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* ** * *
16851401 TTCCGGCGATCAAGGGGGCCGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCC
131 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
16851466 CTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16851531 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
16851596 CACAAAATCTTGTACACTTCGAGTTTTTAGTTGACTTTTTTTGTGCATGCCAACAAAGATACAAG
326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
16851661 GATCACATCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATCTCGAACCGT
391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
16851726 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
456 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
16851791 CCTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAATA
521 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
*
16851856 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCG
586 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
16851921 T-G-G--TGCCCGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
651 TAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** **
16851982 CAGTCTAAGATCAGACCTA-ACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAAAGGGACC
716 CAGTCTAAGATCAGA-CTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * *
16852046 CGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGT
780 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
16852111 GGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G
845 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** *
16852154 -----GAT-----CGGACCGAGGGTTGCACCACCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * * *
16852209 TATTTTTCTTCACCGGGGCACCATCATCGAAGCATCGCCGGAGAAGCTGACTGACGGTATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
16852274 TTCCGACGATC-GGGGGGCCTGGGGGGGCGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGG
131 TTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
16852338 CCCTTAT-TTGGCCTCCTACCCCTCATCAAACCTTGTGAACTCACACCCCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
16852402 AGATTTTATAGGTTTGCTTCCAGTAGCCATTAAATTGTCTAAAATGCGGACACTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
16852467 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * * * *
16852532 AGGATCAAGTTTTCCAAGTTTTGGGCCAAAA-TCCCTTCCAAAAAAAGTTTAAAAAATTCAGAAC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
16852596 CGTAAAAAGTTTCGAAAATCGTGAAAAATA-ACAAACGAGTCATTTTGCGATGAAACTTCACGTG
453 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
16852660 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATG
517 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
16852725 ATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC
582 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
16852790 GACGTAGTGCCCGCCCGTCCG--C-C-CGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCA
647 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
16852851 TTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGATGGCAGGATCGACAGCACGCAGAGGGGT
712 TTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * * * *
16852916 ACCCGATCGATCCCCGACTTGCGTAACTCGCCCCTCTAGCTGGCTGAGCGCTCGCACACTCATTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
16852981 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16853029 -C------C-GA----ACCGAGGGTTGTGGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
16853082 TATTTTTCCTT-GTCGGGGCACCATCGTCGGAGCATCGCCGTAGAACCTGACTGACGG-TTTAGG
66 CATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * *
16853145 GTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGATCGGTGCTGGTACTTGG
130 GTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
16853210 CCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16853275 AGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
16853340 GTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACA
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
16853405 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAACCCCGAACC
389 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * *
16853470 GTAAAAAGTTGT-GAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGA
454 GTAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
16853534 AGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
518 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * *
16853599 CGGTGTGCCTAAAACCACCTATCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCG
583 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
16853664 ACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
648 GCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
16853729 TTCCAGTCTAAGATCGGAC-AGAATCGAGGGTTGCGGTAGCAAGATCGGTAGCATGCAGAGTGGG
713 TCCCAGTCTAAGATCAGACTAGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * *
16853793 ACCCGATCAATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGAGCGTCCGTACGCTCGTTT
777 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
16853858 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
16853920 TCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
16853985 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAAACGGCAGCATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * *
16854050 TTCCGACGATC-----GG--GGGGGTTGTGCGCACATTATGTGTGATGGGTGCTGGTACTTGGCT
131 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
16854108 CTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCATAGCCCCTTAAAGAGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16854173 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * * *
16854238 CACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTGTTTTGTGCGTGTCAATAAAAATACAAG
326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
16854303 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTAAAAAATCCTGAACCAT
391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* *
16854368 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTTACGTGAAGG
456 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
16854433 CTTAAGGGACCATTGTACGAATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAAGA
521 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
16854498 TGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTTGCGCATCCCGTCTCTCTGGCCGGCG
586 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * **
16854563 TAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACCTAGTTCATTCC
651 TAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
16854628 TAGTCTAAGATCAGACCAAACTGAGGGTTGTGATAGTAGGATCGACAGCACGCAGAGGAGGG-CT
716 CAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG-GGGACC
* * * * *
16854692 CGGCCGATCACCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACACTCGTTTCGT
780 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* ** *
16854757 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTCCCAA
845 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16854816 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATATGCTGGTGCCG
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * * * *
16854881 CATTTTTCTTCACCGGGGCACCGTCGTCGGAGCATCACCGGAGAACCTGACCGACGACATT-TGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * * *
16854945 TT-CTAGCGAT--AGGGGGCTGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGC
131 TTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
16855007 CCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCTCACCCCCTTAAAGTGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
16855072 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16855137 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** ** *
16855202 GGATCATGTCTAAAAAAGTTTCTGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACC
390 GGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
** * * *
16855266 CCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTCAA
454 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * *
16855331 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAGTGGCACGTAAAAATATGCA
519 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
16855396 GATGTGCCTAAACTCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGG
584 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
16855461 CGTAGTGCTCGCCCGCCCGCCCGCT---T-GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
649 CGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * * *
16855522 CCTAGTCTAAGATTAGAC-AGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGTGGA
714 CCCAGTCTAAGATCAGACTA-GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * *
16855586 CGCGGCCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAGCGCCTGTACGCTCGTTTT
778 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
16855651 GTGGGTTGACTTAGGCATTCGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * *
16855712 TCTAAGATCCGACCAGACCGAGGGTTGCGATAGCACTTGCTGGGCTCGGGCATGTGCTACG-GCC
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCC
* * *
16855776 ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CTAGCGGCATTGG
65 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGG
* * * *
16855840 GGTTCCGGCGATCGGGGGGGCCGGGGCGGAAGTGCGCACTTGATGTACGATGGGTGCTGGTACTT
129 GGTTCCGACGATCGGGGGGGCCGGGG-GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
16855905 GGCCCTTAAATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACCCCCCCTTTAAAGAGCAT
192 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCAT
16855970 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
256 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
16856035 ATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGGCAACAAAAAT
321 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * ** *
16856100 AGAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTAAGAAAAAATTTAAAAAAATCCCGA
386 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * ** * * *
16856165 GCCGTAAAAAGTTTCAAAACTTATGAAAAATAGAGAACGAGTCGTCTTGCCACGAAACTTCACAT
451 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
16856230 GAAGGCTTAAGGG-CCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
516 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * ** * *
16856294 GAAGATGTGCCCAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCATGTTTGTCTGGC
581 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
16856359 CGGCGTAATGCCCACCCGTCCGTCCGC-CTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
646 CGGCGTAGTGCCCGCCCGCCCGCCCGCTC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * ** * * *
16856423 CATTCCCAGTCTAAGATTGGA-TCGACTGAGGGTTACGACAGCAGGATCAGTAGCATGCAGAGGG
710 CATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGG
** ** * * * * *
16856487 GGACTTGACCGATCCTCGACTTACGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGT
775 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16856552 TTC---------C-TAGG--T--TGAG----TT---AG-----GCATACGGAGTTCATTCCCAG
840 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * *
16856590 TCTAAGATTGGACCAGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGTGCATGTGTTGGTGCCA
1 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * ** *
16856655 CCTTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGAACTTGACCGGTGGTATTGGGG
66 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* ** *
16856720 TTCCGACGATCGGGGTGGCCGCAAGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
131 TTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
** *
16856785 CCTTATATTGGCCTTCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
16856849 GATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
260 GATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
16856913 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCCTGCCAA-AAAAATAC-
324 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * *
16856976 AGCGATCACGTCTACCAAGTTTGGGGCCAGAAA-TTTTTCCAAAAAAATTTTAAAAAATCTCGAA
389 AG-GATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
** * *
16857040 CCACAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTTCACGTT
452 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-T
* *
16857104 GTAGGCTTAA-GGACCATTGTATGAATTTACAAAGCCAT-AAAATGGCATTGGCATGCA-AAATA
516 GAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
16857166 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGG
580 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
16857231 CCGACGTAGTGCCCGCCCGCCTGCCCG--CG--CGTTTCATCGGTTGGTTTAGGCATAC-GAGTT
645 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
16857291 CATTCCTAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGG
710 CATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
16857356 GGACCTGGTCGATCCCCGACTTGCACATCTCGCCCCTCTGGCCAGCTGAGCGCCCGTCACGCTCG
775 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCG
* * * * *
16857421 TTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAG
839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16857466 ATTAGACCAG
Statistics
Matches: 19011, Mismatches: 2669, Indels: 1580
0.82 0.11 0.07
Matches are distributed among these distances:
863 2 0.00
864 9 0.00
865 50 0.00
866 599 0.03
867 83 0.00
868 35 0.00
869 326 0.02
870 17 0.00
871 5 0.00
872 294 0.02
873 1452 0.08
874 370 0.02
875 707 0.04
876 270 0.01
877 257 0.01
878 159 0.01
879 6 0.00
880 12 0.00
881 2 0.00
882 4 0.00
883 100 0.01
884 171 0.01
885 120 0.01
886 540 0.03
887 48 0.00
888 796 0.04
889 494 0.03
890 928 0.05
891 733 0.04
892 728 0.04
893 485 0.03
894 21 0.00
895 112 0.01
896 1342 0.07
897 405 0.02
898 133 0.01
899 659 0.03
900 654 0.03
901 1850 0.10
902 1662 0.09
903 669 0.04
904 139 0.01
905 53 0.00
907 4 0.00
908 3 0.00
909 3 0.00
910 3 0.00
913 1 0.00
914 2 0.00
917 5 0.00
918 4 0.00
919 10 0.00
920 6 0.00
921 4 0.00
922 5 0.00
923 13 0.00
924 7 0.00
925 2 0.00
926 18 0.00
927 8 0.00
928 9 0.00
929 3 0.00
930 19 0.00
931 4 0.00
932 1 0.00
934 6 0.00
935 6 0.00
936 6 0.00
937 8 0.00
938 3 0.00
939 1 0.00
940 1 0.00
941 1 0.00
943 3 0.00
944 3 0.00
945 5 0.00
946 5 0.00
947 3 0.00
948 6 0.00
949 8 0.00
950 3 0.00
951 6 0.00
952 6 0.00
953 7 0.00
954 9 0.00
955 12 0.00
956 4 0.00
957 2 0.00
958 3 0.00
959 8 0.00
960 8 0.00
961 2 0.00
962 4 0.00
963 7 0.00
965 12 0.00
966 5 0.00
967 13 0.00
968 7 0.00
969 4 0.00
970 3 0.00
971 2 0.00
972 4 0.00
973 6 0.00
974 6 0.00
975 3 0.00
976 1 0.00
977 1 0.00
979 2 0.00
980 6 0.00
981 4 0.00
982 7 0.00
983 7 0.00
984 6 0.00
985 7 0.00
986 5 0.00
987 20 0.00
988 11 0.00
989 16 0.00
990 6 0.00
991 12 0.00
992 9 0.00
993 11 0.00
995 4 0.00
996 1 0.00
997 4 0.00
998 5 0.00
1000 1 0.00
1001 2 0.00
1002 2 0.00
1003 4 0.00
1004 5 0.00
1005 4 0.00
1006 7 0.00
1007 14 0.00
1008 6 0.00
1009 14 0.00
1010 68 0.00
1011 211 0.01
1012 249 0.01
1013 178 0.01
1014 10 0.00
1015 18 0.00
1016 11 0.00
1017 8 0.00
1018 16 0.00
1019 9 0.00
1020 20 0.00
1021 16 0.00
1022 12 0.00
1023 3 0.00
1024 184 0.01
1025 111 0.01
1026 154 0.01
1027 152 0.01
1028 116 0.01
1029 111 0.01
1030 164 0.01
1031 111 0.01
1032 110 0.01
1033 81 0.00
1034 103 0.01
1035 97 0.01
1036 84 0.00
1037 57 0.00
1038 45 0.00
1039 56 0.00
1040 41 0.00
1041 64 0.00
1042 60 0.00
1043 83 0.00
1044 73 0.00
1045 57 0.00
1046 48 0.00
1047 47 0.00
1048 52 0.00
1049 39 0.00
1050 52 0.00
1051 49 0.00
1052 64 0.00
1053 112 0.01
1054 55 0.00
1055 43 0.00
1056 87 0.00
1057 115 0.01
1058 70 0.00
1059 46 0.00
1060 49 0.00
1061 34 0.00
1062 31 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC
GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
Found at i:16836781 original size:26 final size:26
Alignment explanation
Indices: 16836745--16836797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16836735 GTTGACTTAG
* *
16836745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16836771 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16836797 G
1 G
16836798 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16838579 original size:26 final size:25
Alignment explanation
Indices: 16838539--16838589 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
16838529 TTGGCTTAGA
*
16838539 CATACGAGTTGATTCCCAGTCTAAG
1 CATACGAGTTCATTCCCAGTCTAAG
16838564 CATACGGAGTTCATTCCCAGTCTAAG
1 CATAC-GAGTTCATTCCCAGTCTAAG
16838590 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (25 bp):
CATACGAGTTCATTCCCAGTCTAAG
Found at i:16840331 original size:26 final size:26
Alignment explanation
Indices: 16840295--16840347 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16840285 GTTGACTTAG
16840295 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
16840321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
16840347 G
1 G
16840348 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:16842116 original size:25 final size:26
Alignment explanation
Indices: 16842073--16842122 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16842063 TTGACTTACG
16842073 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
16842099 CATAGGGAG-TCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16842123 GATCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16845669 original size:26 final size:26
Alignment explanation
Indices: 16845639--16845691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845629 GTTGACTTAG
* *
16845639 GCATATGGAGTTCATTGCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
16845665 GCATACGGAGTTCATTCCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
16845691 G
1 G
16845692 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCCAA
Found at i:16846571 original size:26 final size:26
Alignment explanation
Indices: 16846535--16846587 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16846525 GTTGACTTAG
16846535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16846561 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16846587 G
1 G
16846588 ATCAGAACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16847452 original size:26 final size:26
Alignment explanation
Indices: 16847422--16847473 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16847412 TTGACTTAGT
*
16847422 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16847448 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16847474 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:16848470 original size:26 final size:26
Alignment explanation
Indices: 16848433--16848485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16848423 TTTGACTTAG
* * *
16848433 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16848459 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16848485 G
1 G
16848486 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16848665 original size:117 final size:117
Alignment explanation
Indices: 16848458--16848693 Score: 303
Period size: 117 Copynumber: 2.0 Consensus size: 117
16848448 TCCTAGTTTA
* * * *
16848458 AGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGCAGCAGCATATGCTGG
1 AGCATACGAAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTGGCAGCAGCACATACTGG
* *
16848523 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTG-CTGGGACACCATCGCCAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGACACCATCGCCAG
* * * * * * *
16848575 AGCATACGGAGTTCATTCCCAGCCTAGGATCGGACCGGACTGAGGGTTGCGGTAGCACATACTGG
1 AGCATACGAAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTGGCAGCAGCACATACTGG
* * * *
16848640 GCTCTGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCGTCAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCAG
16848692 AG
1 AG
16848694 TGTCACCGGA
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
117 100 0.99
118 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (117 bp):
AGCATACGAAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTGGCAGCAGCACATACTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCAG
Found at i:16849476 original size:26 final size:26
Alignment explanation
Indices: 16849446--16849498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16849436 GTTGACTTAG
*
16849446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16849472 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16849498 G
1 G
16849499 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16850373 original size:26 final size:26
Alignment explanation
Indices: 16850336--16850388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16850326 GTTGACTTAG
*
16850336 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16850362 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16850388 G
1 G
16850389 ATCGGGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16852475 original size:873 final size:873
Alignment explanation
Indices: 16848576--16857467 Score: 10502
Period size: 873 Copynumber: 10.0 Consensus size: 873
16848566 CATCGCCAGA
* * * * * *
16848576 GCATACGGAGTTCATTCCCAGCCTAGGATCGGACCGGACTGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
16848641 CTCTGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCGTCAGAGTGTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
16848706 ACCTGACCGGCGGCATTGGGTTTTCGATGATC-GGGGGGCC-GGGGGGTGTTCGCACATGATGTT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
16848769 CGGTGGGTGCTGGTACATGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16848834 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16848898 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT-
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16848962 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAGAACTCCTTTCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
16849027 ATTTTAAAAAATC-CTGAACTGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACAAGTCGTCT
456 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
16849091 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAAGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
16849156 ACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACAGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16849221 GCATCCCGTCTCTCGGGCCGGCGTAGTGCCCGCCCGCCCACCTGTTCGTTTCGTCGGTTGACTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
16849286 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGAC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
16849351 AGCACGTAGAGGGGGTCCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAACG
779 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
16849416 CCCGCATGCTCGTTTCATGGGTTGACTTAG
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
16849446 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T-C--G-----GA-C----C-GA-
* * ** * * *
16849511 TGATGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGATGCTTTTTTCTTCATCGAGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
16849576 CACCATCGTCGGAGCATCGTCGGAGAACCTGATCGACGACAATGGGGTTCCGATGATCGGGGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
16849641 CCGAGTGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTAGTACTTGGCCCCTATATTGGCCCCT
170 CCG-GGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16849705 TATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGC
233 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
16849770 TGCCAGTAGCCATTAAAGTCTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
298 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * ** * * * *
16849835 GCTTCAAGTTTCTAGCAAAATATTTTTGTAC-TAGCCAAAAAAAATACAAGGATCACGTCTACTA
363 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCA
* * * * *
16849899 AGTTTGGGGCCAAAACACCTTCCGACAAAAATTGTAAAAAATCCCAAACCGTAAAAAGTTTCAAA
427 AGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* ** * * **
16849964 AGTTATGAAAAATAGAAAATGAGTCATCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
491 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
16850029 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
556 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
16850094 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
621 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* *** * * * * *
16850159 CCTGCCTATTCGTTTCGTCGGTTGACTTAAGCATATGGAGTTCACTCCCAGTCTAAGATCGGACC
686 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * **
16850224 AGACCGAGTGTTGCGGTAGC---AT-----GCA-G-A-A-TGGGTCCCAG-CTGATCTTCGGCTT
751 A-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTT
* * *
16850276 GCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAG
814 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16850336 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A-T--C-G-----GA------C----
* * * * ** *
16850401 CGAGGGTTGCGGCAGCACATACTAGGCTCGGGCATGTGCTAGTGCTGTGTTTTTCTTCGTCGGGT
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
16850466 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * ** * *
16850531 CC-GGGGGGTGTGCGCATATGATATTTGGTGGGTGCTGG-AC-TGGCCCTTATATTGGCCTCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16850593 TGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16850658 CCAGTAGCCATTAAAGTG-CTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCATGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16850722 TTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACTAAAATACAAGGATCACATCTACCAAGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * *
16850787 TTGGGGTGAAAACGCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-AGAAAAT
430 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA-AAAAT
* *
16850851 CATG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
494 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
16850915 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAAATATGAAGATGTGCCTAAACCCAC
559 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCAC
* * *
16850980 CTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGT--------GCC
623 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * * *
16851037 CGCACGCTAGTTTCGTTGGTTGGTTTAGGAATACAGAGTTCATTACCAGTCTAAGATCAGATCAG
688 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-
* * * ** ** * * *
16851102 ATCGAGGGTTACGGGAGCAAAATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTG
752 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * *
16851167 CATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTTCATAGGTTGACTTAGGCATACAG
817 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG
* *
16851232 AGTTCATTCCCAATCTAAGCATGCGGAGTTCATTACCAGTCTAAGATCGGATCGGACCAAGGGTT
1 -G--------C-A--T----A--CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
* * * * *
16851297 GTGGCAGCAAATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCG
48 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * **
16851362 TCGGAGCGTCGCCGGAGAACCTGTCCGGCGGCATTGGGGTTCCGGCGATCAAGGGGGCC-GGGGG
113 TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
16851426 GTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
178 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
16851491 CAATCCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
243 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
16851556 CATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
308 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
16851621 TTTAGTTGACTTTTTTTGTGCATGCCAACAAAGATACAAGGATCACATCTACCAAGTTTGGGGCC
373 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
16851686 AAAAATCTTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
438 AAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
16851751 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACAATTGTATGAATTTA
503 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
16851816 CAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCT
568 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
16851881 ATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCTGCCCGCTCGCTCG
633 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG
16851946 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTAACCGAGGGTT
698 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTT
* ** *
16852011 GCGGCAGCAGGATCGATAGCACGCAGAAAGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCC
762 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* *
16852076 CTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
827 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
16852123 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCACCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
16852188 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCATCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
16852253 AGCTGACTGACGGTATTGGGGTTCCGACGATC-GGGGGGCCTGGGGGGGCGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * * * *
16852317 GGGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTCCTACCCCTCATCAAACCTTGTGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
16852381 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAATTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16852446 TGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16852511 GTGCATGCCAACAAAAATACAAGGATCAAGTTTTCCAAGTTTTGGGCCAAAA-TCCCTTCCAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAA
* * *
16852575 AAAGTTTAAAAAAT-TCAGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA-ACAAACGAGTCA
454 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA-AAACGAGTCG
* *
16852638 TTTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16852703 GGCATTGGCATGCAAAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
16852768 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCTGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ***
16852833 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGATGGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
16852898 GACAGCACGCAGAGGGGTACCCGATCGATCCCCGACTTGCGTAACTCGCCCCTCTAGCTGGCTGA
776 GACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
16852963 GCGCTCGCACACTCATTTCATGGGTTGACTTAG
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
16852996 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16853061 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTT-GTCGGGGCACCATCGTCGGAGCATCGCCGTAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
16853125 AACCTGACTGACGG-TTTAGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
16853189 GCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16853254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16853319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16853384 GTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
16853449 AATTTTAAAAAACCCCGAACCGTAAAAAGTTGT-GAAAATCGTGAAAAATAAAAAATGAGTCGTC
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
16853513 TTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
16853578 CATTGGCACGTAGAAATATGACGGTGTGCCTAAAACCACCTATCACCCTATCGATCCACAGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16853643 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
16853708 GCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGACAGAATCGAGGGTTGCGGTAGCAAGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAACCGAGGGTTGCGGCAGCAGGA
** * * * * * *
16853773 TCGGTAGCATGCAGAGTGGGACCCGATCAATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCT
774 TCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16853838 GAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
839 GAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG
* *
16853894 TATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCATATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATG
* *
16853959 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * * * * *
16854024 GGAGAACCTAAACGGCAGCATTGGGGTTCCGACGATC------G--GGGGGGTTGTGCGCACATT
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * * *
16854081 ATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16854146 CTCATAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
16854211 CAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTG
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
16854276 TTTTGTGCGTGTCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
16854341 AGAAAATTTTAAAAAATC-CTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
451 AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
16854405 CATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATCAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
16854470 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGA
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
16854535 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCG
** * * * ** *
16854600 GTTGGCTTAGGCATACCTAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGTGATAGT
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGCGGCAGC
* * * *
16854665 AGGATCGACAGCACGCAGAGGAGGG-CTCGGCCGATCACCGGCTTGTGCATCCCGCCCCTCTGGC
770 AGGATCGACAGCACGCAGAGG-GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
16854729 CGGCTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
834 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16854769 GCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATT-C----C----C------AG-----------TCTAAGATCGGATCGGAC
* * * **
16854834 CGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCACCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
16854899 CACCGTCGTCGGAGCATCACCGGAGAACCTGACCGACGACATT-TGGTT-CTAGCGAT--AGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG
* * *
16854960 G-CTGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
16855024 ATCCCTCATCAAACTTGGAGAACTCTCACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCT
234 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
16855089 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
299 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* **
16855154 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAAAAAA
364 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAA
** ** *
16855219 GTTTCTGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATC-CTGAACCCCAAAAAGTTTCCAAA
428 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAA
* *
16855282 ATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTCAAGGCTTAAGGGACCATT
492 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * * * *
16855347 GTATGAATTTACAAGCCATAAAAAAGGCAGTGGCACGTAAAAATATGCAGATGTGCCTAAACTCA
557 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
16855412 CCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCGC
622 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
16855477 CCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGA-CA
687 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
16855541 GGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGTGGACGCGGCCGATCCCCGGCTTG
752 --ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * * *
16855606 CGTATCCCACCCCTCTGGCCGGTTGAGCGCCTGTACGCTCGTTTTGTGGGTTGACTTAG
815 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16855665 GCATTCGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GAT-CG----GAC
** * * *
16855730 CGAGGGTTGCGATAGCACTTGCTGGGCTCGGGCATGTGCTACG-GCCACATTTTTCTTCGTCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGG
* * *
16855794 GCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CTAGCGGCATTGGGGTTCCGGCGATCGGGGG
104 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGG
** * * *
16855858 GGCCGGGGCGGAAGTGCGCACTTGATGTACGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCC
168 GGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16855923 CTGTCCCTCATCAAACCTCGAGAACTCACCCCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
232 CTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTT
*
16855988 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGT
296 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16856053 ACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGGCAACAAAAATAGAAGGATCACGTCTACC
361 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
16856118 AAGTTTTGGGCCAAAACTCCTT-AAGAAAAAATTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAA
426 AAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* ** * * * *
16856182 AACTTATGAAAAATAGAGAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGG-CCT
490 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
16856246 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACC
555 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** * * * *
16856311 CACCTGCCACCCTATCGATCCACGGCTTGCGCATCATGTTTGTCTGGCCGGCGTAATGCCCACCC
620 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
16856376 GTCCGTCCGCCTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
685 G--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * ** ** *
16856441 GGATCGACTGAGGGTTACGACAGCAGGATC-AGTAGCATGCAGAGGGGGACTTGACCGATCCTCG
746 AGACCAACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* * * * * * *
16856505 ACTTACGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCCTAGGTTGAGTTAG
810 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
16856569 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
16856634 CTCGTGCATGTGTTGGTGCCACCTTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * ***
16856699 ACTTGACCGGTGGTATTGGGGTTCCGACGATCGGGGTGGCCGCAAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
16856764 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16856829 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAA
16856892 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
16856957 TTGCCTGCCAA-AAAAATAC-AGCGATCACGTCTACCAAGTTTGGGGCCAGAAA-TTTTTCCAAA
390 GTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCAAA
** * *
16857019 AAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16857084 CTTGCCAT-AAACTTCACGTTGTAGGCTTAA-GGACCATTGTATGAATTTACAAAGCCAT-AAAA
518 CTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAA
*
16857146 TGGCATTGGCATGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
16857210 TTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCGCGTTTCATCGGTTGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** *
16857275 TTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
16857339 TGGCAGCACGCAGAGGGGGACCTGGTCGATCCCCGACTTGCACATCTCGCCCCTCTGGCCAGCTG
775 CGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16857404 AGCGCCCGTCACGCTCGTTTCGTCGATTGGCTTAG
840 AGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAG
* *
16857439 GCATACAGAGTTCATTCCTAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
16857468 TAGACCAGAG
Statistics
Matches: 6945, Mismatches: 836, Indels: 482
0.84 0.10 0.06
Matches are distributed among these distances:
868 24 0.00
869 107 0.02
870 89 0.01
871 4 0.00
872 76 0.01
873 1361 0.20
874 200 0.03
875 143 0.02
876 73 0.01
877 220 0.03
878 117 0.02
879 9 0.00
880 1 0.00
881 4 0.00
882 5 0.00
883 99 0.01
884 119 0.02
885 114 0.02
886 102 0.01
887 5 0.00
888 243 0.03
889 6 0.00
890 338 0.05
891 245 0.04
892 102 0.01
893 3 0.00
894 11 0.00
895 28 0.00
896 1088 0.16
897 21 0.00
898 10 0.00
899 298 0.04
900 510 0.07
901 289 0.04
902 528 0.08
903 131 0.02
904 133 0.02
905 57 0.01
906 3 0.00
907 1 0.00
908 1 0.00
910 1 0.00
912 3 0.00
913 2 0.00
914 21 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16853909 original size:26 final size:26
Alignment explanation
Indices: 16853873--16853925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16853863 GTTGACTTAG
16853873 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
16853899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
16853925 G
1 G
16853926 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:16855393 original size:900 final size:897
Alignment explanation
Indices: 16852123--16857465 Score: 6594
Period size: 896 Copynumber: 6.0 Consensus size: 897
16852113 GTTGACTTAG
* *** *
16852123 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCACCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
** ** * *
16852188 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCATCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
16852253 AGCTGACTGACGGTATTGGGGTTCCGACGATCGGGGGGCCTGGGGGGGCGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
* * * * *
16852318 GGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTCCTACCCCTCATCAAACCTTGTGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16852382 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAATTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16852447 GCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
16852512 TGCATGCCAACAAAAATACAAGGATCAAGTTTTCCAAGTTTTGGGCCAAAA-TCCCTTCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC-AAAA
* * * * * *
16852576 AAGTTTAAAAAATTCAGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA-ACAAACGAGTCATT
452 AATTTTAAAAAATCCTGAACCATAAAAAGTTTC-AAAATCGTGAAAAATAGA-AAACGAGTCGTC
*
16852640 TTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16852705 CATTGGCATGCAAAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
16852770 CGCATCCCATCTCTCTGGCCGACGTAGTGCCCG--C-CCGTCCGCCCGCTCGTTTCGTCTGTTGG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* ** ***
16852832 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGATGGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACTGAGGGTTGCGGCAGCAGGAT
* * ** * * * * * *
16852897 CGACAGCACGCAGAGGGGTACCCGATCGATCCCCGACTTGCGTAACTCGCCCCTCTAGCTGGCTG
774 CGACAGCACGCAGAGGGG-GCTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
16852962 AGCGCTCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16853022 G-AT-C-G-G---------A--C------C-GA----ACCGAGGGTTGTGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
** *
16853061 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTT-GTCGGGGCACCATCGTCGGAGCATCGCCGTAG
66 CTCGGGCATGTGCTGGTGCCACATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * * *
16853125 AACCTGACTGACG-GTTTAGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGT
130 AACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
16853189 GCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16853254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16853319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16853384 GTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * * *
16853449 AATTTTAAAAAACCCCGAACCGTAAAAAGTTGTGAAAATCGTGAAAAATAAAAAATGAGTCGTCT
452 AATTTTAAAAAATCCTGAACCATAAAAAGTT-TCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
16853514 TGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16853579 ATTGGCACGTAGAAATATGACGGTGTGCCTAAAACCACCTATCACCCTATCGATCCAC-AGCTTG
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTG
* *
16853643 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTCGTCGGTTG
* * *
16853708 GCTTAGGCATACGGAGTTCATTTCC-AGTCTAAGATCGGACAGAATCGAGGGTTGCGGTAGCAAG
709 GCTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGATCGGACAGACT-GAGGGTTGCGGCAGCAGG
** * * * ** * * *
16853772 ATCGGTAGCATGCAGAGTGGGACCCGATCAATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGC
772 ATCGACAGCACGCAGAG-GGGGCTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16853837 TGAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16853899 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
*
16853964 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
16854029 ACCTAAACGGC-AGCATTGGGGTTCCGACGATC----GG--GGGGGTTGTGCGCACATTATGTGT
131 ACCTGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
16854087 GATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCATA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16854152 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16854217 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16854282 GCGTGTCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
*
16854347 TTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCTGAACCATAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
16854412 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATCAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
16854477 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTTGCGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
16854542 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * ** *
16854607 TAGGCATACCTAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGTGATAGTAGGATCG
712 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACTGAGGGTTGCGGCAGCAGGATCG
* * *
16854672 ACAGCACGCAGAGGAGGGCTCGGCCGATCACCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAG
776 ACAGCACGCAGAGG-GGGCTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16854737 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
16854795 GCATATAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * ** * *
16854860 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACCGTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
16854925 ACCTGACCGACGACATT-TGGTT-CTAGCGAT-AGGGGGCTGGGGGGTGTGCGCATATGATGTGC
131 ACCTGACCGACGACATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
16854987 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCTCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16855052 CCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
16855117 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** **
16855182 GCATGCCAACAAAAATACAAGGATCATGTCTAAAAAAGTTTCTGGCCAAAACTCCTTCCAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** *
16855247 TTTTAAAAAATCCTGAACCCCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTT
454 TTTTAAAAAATCCTGAACCATAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
16855312 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAG
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
16855377 TGGCACGTAAAAATATGCAGATGTGCCTAAACTCACCTACTACCCTATCGATCCACGGCTTGCGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * *
16855442 ATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCG-C--CCGCCCGCTTGTTTTGTCGGTTGGCTT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
** ** *
16855504 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACAGGACCAAGGGTTACGGCAGCAGGATCGA
713 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACA-GACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
16855569 CAGCACACAGAGGTGGACGCGGCCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAGC
777 CAGCACGCAGAGG-GGGCTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
16855634 GCCTGTACGCTCGTTTTGTGGGTTGACTTAGGCATTCGGAGTTCACTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
16855691 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGATAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
16855756 CTCGGGCATGTGCTACG-GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
16855820 AACCTGA-CTAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGCGGAAGTGCGCACTTGAT
130 AACCTGACCGA-CGACATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GG-TGTGCGCACATGAT
* * *
16855884 GTACGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
16855949 CACCCCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 CACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16856014 AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * **
16856079 TTTTTGCATGGCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTAAGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCA
* * * * ** *
16856144 AAAAATTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAAAACTTATGAAAAATAGAGAACGAGTCG
449 AAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCG
* * *
16856209 TCTTGCCACGAAACTTCACATGAAGGCTTAAGGG-CCTTTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
16856273 GGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTGCCACCCTATCGATCCACGGCT
578 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
** * * * * * *
16856338 TGCGCATCATGTTTGTCTGGCCGGCGTAATGCCCACCCGTCCGTCCGCCTGTTCGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTCGTCGGT
* * * *
16856403 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GACTGAGGGTTACGACAGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACTGAGGGTTGCGGCAGCAG
* * * * * * * *
16856467 GATC-AGTAGCATGCAGAGGGGGACTTGACCGATCCTCGACTTACGCATCCCACCCCTCTGGCCG
771 GATCGA-CAGCACGCAGAGGGGG-CTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
16856531 GCTAAGCGCCCGCACGCTCGTTTC---------C-TAGG--T--TGAG----TT---AG-----
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
16856569 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * * *
16856634 CTCGTGCATGTGTTGGTGCCACCTTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** ** **
16856699 ACTTGACCGGTGGTATTGGGGTTCCGACGATCGGGGTGGCCGCAAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTG
* ** *
16856764 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16856829 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAA
16856892 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
16856957 TTGCCTGCCAA-AAAAATAC-AGCGATCACGTCTACCAAGTTTGGGGCCAGAAA-TTTTTCCAAA
388 GTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCC-AA
* *
16857019 AAAATTTTAAAAAAT-CTCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCG
450 AAAATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCG
*
16857083 TCTTGCCAT-AAACTTCACGTTGTAGGCTTAA-GGACCATTGTATGAATTTACAAAGCCAT-AAA
513 TCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAA
* *
16857145 ATGGCATTGGCATGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-A
576 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * *
16857208 GCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-T--GCCCGCGCGTTTCATCG
641 -CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCG
* * * *
16857270 GTTGGTTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGC
705 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC-AGACTGAGGGTTGCGGCAGC
* * * * * *
16857334 AGGATTGGCAGCACGCAGAGGGGGAC-CTGGTCGATCCCCGACTTGCACATCTCGCCCCTCTGGC
769 AGGATCGACAGCACGCAGAGGGGG-CTC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
16857398 CAGCTGAGCGCCCGTCACGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
832 CGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
16857463 AA
896 AA
16857465 G
1 G
16857466 ATTAGACCAG
Statistics
Matches: 3861, Mismatches: 460, Indels: 249
0.84 0.10 0.05
Matches are distributed among these distances:
867 1 0.00
868 24 0.01
869 105 0.03
870 12 0.00
871 1 0.00
872 64 0.02
873 597 0.15
874 153 0.04
875 138 0.04
876 11 0.00
877 256 0.07
878 154 0.04
879 4 0.00
880 5 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 4 0.00
886 2 0.00
888 2 0.00
890 4 0.00
891 2 0.00
892 2 0.00
894 6 0.00
895 23 0.01
896 1078 0.28
897 16 0.00
898 7 0.00
899 15 0.00
900 444 0.11
901 242 0.06
902 234 0.06
903 94 0.02
904 100 0.03
905 56 0.01
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCTGAACCATAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCTAGTCTAAGATCGGACAGACTGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGCTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16855701 original size:26 final size:26
Alignment explanation
Indices: 16855665--16855717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855655 GTTGACTTAG
*
16855665 GCATTCGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
16855691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16855717 G
1 G
16855718 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16857494 original size:160 final size:158
Alignment explanation
Indices: 16857260--16857624 Score: 432
Period size: 160 Copynumber: 2.3 Consensus size: 158
16857250 CCTGCCCGCG
* * **
16857260 CGTTTCATCGGTTGGTTTAGGCATACGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAAGGT
1 CGTTTCATCGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAAGGT
* * * * *
16857325 TGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGAC-CTGG-TCGATCCCC-GACTTGCACATCTC
66 TACGGCAGCAAGATCGGCAGCACACAGAGGGGGACTC-GGCT-GATCCCCAG-CTTGCACATCCC
16857387 GCCCCTCTGGCCA-GCTGAGCGCCCGTCACGCT
128 GCCCCTCTGG-CAGGCTGAGCGCCCG-CACGCT
* * * * *
16857419 CGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTAGACCAGAGCGAGGG
1 CGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAAGG
* * *
16857484 TTATGGCAGCAAGATCGGTAGCACACAGAGGGGGACTCGGCTGATCCCCAGCTTGCAGATCCCGC
65 TTACGGCAGCAAGATCGGCAGCACACAGAGGGGGACTCGGCTGATCCCCAGCTTGCACATCCCGC
* *
16857549 CCTTCTGGCAGGTTGAGCGCCCGCACGCT
130 CCCTCTGGCAGGCTGAGCGCCCGCACGCT
* ** *
16857578 CGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTCCTAGTCTAAG
16857625 CATACGAAGT
Statistics
Matches: 175, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
159 71 0.41
160 101 0.58
161 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CGTTTCATCGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAAGGT
TACGGCAGCAAGATCGGCAGCACACAGAGGGGGACTCGGCTGATCCCCAGCTTGCACATCCCGCC
CCTCTGGCAGGCTGAGCGCCCGCACGCT
Found at i:16857628 original size:26 final size:26
Alignment explanation
Indices: 16857598--16857650 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857588 GTTCACTTAG
* *
16857598 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
16857624 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
16857650 G
1 G
16857651 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:16859248 original size:26 final size:26
Alignment explanation
Indices: 16859212--16859262 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16859202 TGACTTAGGC
16859212 ATACGAAGTTCATTCCCAATCTAAGT
1 ATACGAAGTTCATTCCCAATCTAAGT
* *
16859238 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
16859263 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGT
Found at i:16860935 original size:26 final size:26
Alignment explanation
Indices: 16860905--16860957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16860895 GTTGACTGAG
*
16860905 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
**
16860931 GCATACGAAGTTCATTCCTGATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16860957 G
1 G
16860958 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16863593 original size:26 final size:26
Alignment explanation
Indices: 16863563--16863615 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16863553 GTTGACTTAG
16863563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16863589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16863615 G
1 G
16863616 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16867101 original size:26 final size:26
Alignment explanation
Indices: 16867062--16867114 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16867052 GTTGACTTTG
* * *
16867062 GCATACAGAGTTCATTTCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
16867088 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
16867114 G
1 G
16867115 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:16867527 original size:861 final size:864
Alignment explanation
Indices: 16862077--16871585 Score: 9545
Period size: 861 Copynumber: 10.8 Consensus size: 864
16862067 NNNNNNNNNN
* *
16862077 ATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CA-T-AACTGCCTGAAATAGGGGACAAACTTTT
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGAC--ACTTTT
* * * * *
16862139 TTCAAAATGGGTCACAAGATCTTGTAGGCATTTTGAGTTTTTTAGCACTGAATATTTTATGTCCA
63 TTC-AAAT-GGTCACAAAATCTTGTA--CACTTCGAG-TTTTTAG--CTGAAT-TTTTTTGTGCA
* * * *
16862204 TGCCAACATAAGTACAATGGATCATGTCTACCAAAGTTTGTGGGCCAAAACTCCATTTCCGAAAA
120 TGCCAACAAAAATACAA-GGATCACGTCTACC-AAGTTTG-GGGCCAAAACTCC--TTCCAAAAA
* * *
16862269 AATTTGTTAAAAATCCCGAATCGAAAAAAGTTTCAAAAATCATG-AAAAT--AAAACGAGTCGTC
180 AATTT-TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
16862331 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGG
244 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** ** *
16862396 TGTTGGCACACAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTG
309 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
16862461 CGCATCCCGTCTCTCCGGTCGAAGTAGTGCTCGCCCGCCCGCCCGCTCATTGT-GCCGGTTGGCT
374 CGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCGTTCGTT-TCGTCGATTGGCT
* * * *
16862525 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGAATCGAGGGTTGCGGTAGCAAGATT
434 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGG-T---GT-----GATC
** * *
16862589 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCT-TTGCCTGGATG
489 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTG
* *
16862652 AGCGCCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT
553 AGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *** * * * * * * * *
16862716 -CAG-A-TCGGACCGAGGGTC-ACG-TTAG-CACATG--C-TGGGCT-CGAGCATGTA-ATACAG
617 ACGGAATTCATTCCCA--GTCTAAGATCAGAC-CA-GACCGAGGGTTGCG-GCA-GCACATGCTG
* **** * * * * *
16862770 CTGCATTTTTCTTTGT-CGGGGCACCATCGCTGGAGCATCGCCAGAGAACCTGACCGGCGGCATT
676 -GGC-TCGGGC-TGGTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
16862834 AGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGTGCACATAATGTGCGATGGGTGCTGGTACTT
738 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
16862898 GGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
803 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
16862959 ATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16863024 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
16863089 ATAAAATGG-TCATGTCTACCAAGTTTGGGGCCAAAA-TGCCTTTCGAAAAAATTTTGAAAAATC
131 ATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATC
* * * ** * * * * *
16863152 TCGAACCGCAAAAAGTTTTAAAAATGGTTAAAAATAGAAAATGAGCCATCTTGGCATGAAACTTC
194 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
16863217 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
259 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * * * *
16863282 ATATAAAGATGCGTCTAAACCCACCTACCACCTTAGCGATCCACGGCTTGCACATCCCGTCTCTC
324 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
16863347 TGGCCGACGTAGTGCCCGCCCGTCTGCCCGCCTGCTCATTTCATC-AGTTGGCTTAGGCATACGG
389 TGGCCGACGTAGTGCCCG-CC--C-GCCCG--T--TCGTTTCGTCGA-TTGGCTTAGGCATACGG
* * *
16863411 AGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGGGAGCAAGATCGACAGCACGTA
445 AGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGG-T------G--TGATCGACAGCACGCA
* ** * ** * * *
16863475 GAGGGGGGACCTGGTCAATCCCTAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAACGCCCGCAT
500 GA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
16863540 GTTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
564 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATT
*
16863605 CCCAGTCTAAGATCGGACC-GACCCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTG
629 CCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGCGGCAGCACATGCTGGGCTC--G---G-GCT-
**
16863669 GTGCCTCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCA
686 G-G------------TC--CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
16863734 TTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
736 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
16863799 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
801 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16863863 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* **
16863928 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-AATTTTGTGCATGCCAACAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
16863992 CTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAAAAAATCCC
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * *
16864057 GAATCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAG
196 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** **
16864122 GTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGTGTTGGCACACAGAAAT
261 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
16864187 ATGAAGATGCGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
16864252 GTCGAAGTAGTGCCCGCCCGCCCGCTCGTTGT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCC
391 GCCGACGTAGTGCCCGCCCGCCCGTTCGTT-TCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
*** * * * ** *
16864316 CAGTCTAAGATCAGACCAAACCAAGGGTTAGGGTAGAAAGATTGGTAGCACGCAGAGGGGGAGCC
455 CAGTCTAAGATCAGACTGGATC----G--AGGGT-G--TGATCGACAGCACGCAGAGGGGGACCC
* * * *
16864381 AACCGATCCCCGGCTTACTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
511 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* **** * **** **
16864446 GGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGACTGAGGGT-TGTG-
576 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGA
* * * * * * **** *** *
16864507 GCAG-CACATG--C-TGGGCT-CGAGCATGTA-ATACTGTCGCATTTTTCTTCACCGAGGCACCA
641 TCAGAC-CA-GACCGAGGGTTGCG-GCA-GCACATGCTG-GGC-TCGGGCTGGTCCGGGGCACCA
* ** * **
16864566 TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGACGGGGCCGGG
700 TCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
16864631 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCGCCTATCCCTC
765 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16864696 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
830 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16864731 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16864796 AAATGGTCACAAAATCTTTTACACTTCGAGTTTTTGGCTAAATTTTTTTGTGCATGCCAACAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
16864861 ATACAAGGATCACGTCTACCATGTTTGGGGCC-AAACTCCTTCCGAAAAAATTTTAAAAAATCTC
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * * * * *
16864925 AAACTGGAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCATGCCATGAAACTTCAC
196 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
16864990 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
261 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
16865055 ATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTA
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
16865120 GCCGACGTAGTGCCTGCCCGTCTGCCCGCCCGCTCGTTTCGTC-AGTTGGTTTAGGCATAC-GAG
391 GCCGACGTA--G--TG-CC--C-GCCCGCCCGTTCGTTTCGTCGA-TTGGCTTAGGCATACGGAG
* * ** * * **
16865183 TTCTTTACCAGTCTAAGATTGGA-TCAGACCGAGGGTTCCGGTAGCAGGATCGGTAGCACGCAGA
447 TTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGG-T---GT-----GATCGACAGCACGCAGA
* * * * * *
16865247 GGTGGACCCGACCGATCCCTGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCTCCCGCACGCT
502 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * **
16865312 CGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACTGGA--CCG
567 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCC-
* * * ** * * **** *
16865373 CAAGT-TACGAT-AG-CACATG-CTG-GGCTTG-GGCATGTGC-TGGTGCCGCATTTTTCTTCGT
631 C-AGTCTAAGATCAGAC-CA-GACCGAGGGTTGCGGCA-GCACATGCTG-GGC-TCGGGC-TGGT
* ** **
16865431 -CGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATC
689 CCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* *
16865494 -GGGGGGCCGGGGGGGTATGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
753 GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
16865558 CCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCGCTTAAAGAGC
817 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16865606 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16865671 AAATGGTCACAAAATCTTGTACACTGT-GAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
66 AAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
16865735 AATACAAGGATGACGTCTACCAA----GGGGCCAAAAATCTTTTCAAAAAAATTTTAAAAAATCC
130 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
16865796 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGGAAACGAGTCGGCTTGCCATGAAACTTCA
195 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
16865861 CGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGTAGAAA
260 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
16865926 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTTT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
16865991 GGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCCGCTT-GTTTCGTC-AGTTGGCTTAGGCATGCAG
390 GGCCGACGTA--G--TGCCCG--C-CC-GCCCG-TTCGTTTCGTCGA-TTGGCTTAGGCATACGG
* * ** *
16866054 AGATCATTCCTAGTCTAAGATTGGA-TCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
445 AGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGG-T------G--TGATCGACAGCACGCA
** * ** *
16866118 GAGGGGGACCCGGTCGAT-CCCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGTGCCCGCACG
500 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * ***
16866182 CTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG-A-CCGGAC
565 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTC
* ** * * * ****
16866243 CGAGGGT-TGCGGT-A-ACACATG--CTA-GGCT-CAGGCATGTGC-CGATGCT--GCATTTTTC
630 CCA--GTCTAAGATCAGAC-CA-GACCGAGGGTTGC-GGCA---GCAC-ATGCTGGGC-TCGGGC
* * * * * **
16866298 TTCGT-CAGGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGTGGTTCCGGT
685 -TGGTCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
16866362 GATC-GAGGGGCCGTGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTTCTTGGCCCTTAT
749 GATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
16866426 ATTTGCCCCTTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGC
812 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16866479 ATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16866544 AAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
16866609 ATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAAAAT-CTTCCAAAAAAATTTTAAAAAATCT
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCC
*
16866673 CGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
195 CGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16866737 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGACATTGCCATGCAGAA
259 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * * *
16866802 ATATTAAGTTGCGCCTAAACCTAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
324 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * **
16866867 TGGCCGACATAGTGCCCGCCCACCCGTTCATTTCATCGATTTTCTTAGGCATACGGAGTTCATTC
389 TGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
*
16866932 CCAGTCTAAGATCAAACTGGATCGAGGGT-T-A-CGACAGCACGCAGAGGGGGACCCGACCGATC
454 CCAGTCTAAGATCAGACTGGATCGAGGGTGTGATCGACAGCACGCAGAGGGGGACCCGACCGATC
* * * *
16866994 CCCAGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACT
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
16867059 TTGGCATACAGAGTTCATTTCTAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCG
584 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCA
* * *
16867124 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAGGTCCGGGGTACCATCACCGGAGCATCG
649 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTGGTCCGGGGCACCATCGCCGGAGCATCG
* * **
16867189 TCGGAGAACCTGACCCACGACATTGGGGTTCCGAAAATCGGGGGGGCCGGGGGGTGTGCGCACAT
714 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* * * * *
16867254 GATGTGCGATGGCTGGTGGTACTTGGCCCGTATATTGGCCCCCTATCCCACATCAAACCTTGAGA
779 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16867319 ACTCACACCCCCTTAAAAAGC
844 ACTCACACCCCCTTAAAGAGC
* * *
16867340 ATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
16867405 GAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * ** **
16867470 ATACAAGGATCATGTATACCAATTTTACGGATAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* ** * * *
16867535 GAACCGTAAAAACTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCAG
196 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16867600 GTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAAT
261 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
16867665 ATGAAGATGTGCCAAAACCCACCTATCGATCCACGGCT-TGCGCATCC-CGTCTCTCCAGTCGGC
326 ATGAAGATGTGCCTAAACCCACC--T--A-CCAC-CCTAT-CG-ATCCACGGCT-T---G-C-GC
* * * * * ** *
16867728 ATAGTGCCTGCCCCTAC-GGCCGGCGTAGTGCCCGCCCGCTCACTCGTTTCGTCGGTTGGCTTAG
377 --A-T-CCCGTCTCT-CTGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGATTGGCTTAG
* * * *
16867792 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGCAGCAAGATTGGT
437 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGG-TGT-G-ATC--GA----C
* * * * * *
16867856 AGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGGCGGCTGAGTG
492 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
16867921 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
557 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
16867986 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
622 ATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC--G---
* * * **
16868051 GTGCTGGTGCCACATTTTTCTTCGTCGGGGGACCATCCCCGGAGCATCGTCGAAGAACCTGATTG
682 G-GCT-G-G------------TC--CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
16868116 ACGGCATTAGAGTTCC-AGCTATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTCCGATGGGTG
730 ACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
16868180 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACACCCTTA
794 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
16868245 AAGAGC
859 AAGAGC
***
16868251 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAAAGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * ** *
16868316 AAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAGTTTTTTTTTGCACACCAAAAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * **
16868381 AAACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATATC
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * * * * * * *
16868446 GAACTGCAAAAA-TATTTAAAAATCGTAAAAAAAAGAAAACAAGTCGTCTTGGCATGAAACTTCA
196 GAACCGTAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* ***
16868510 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAAATAGAAA
260 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
16868575 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * ** * *
16868640 GTCTGGCGTAGAGCCCGCCCGCTTGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
390 GGCCGACGTAGTGCCCG-CC-C--GCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
** * *
16868705 TTCGAAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGG
451 TTCCCAGTCTAAGATCAGACTGGATCGAGGG-TGT--------GATCGACAGCACGCAGAGGGGG
* * * *
16868770 ACCCGATCGATCGCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
507 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * *
16868835 CATAGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAACATA-GGGAGTCATTCCCAGTCT
572 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCT
* * *
16868899 AAGATCAGACCAGATCGAGGGTTTCGGTAGCACATGCTGGGCTCGAGCATGTGCTGCTGCCGTAT
637 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT----C--G-G--GCTG--G---
* * * *
16868964 TTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGA-CTAGCGACATTGGGGTT
688 ------T--CCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTT
*
16869028 CCGACGA-CCGGGGGGCCAGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
744 CCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16869092 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
806 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16869151 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTGTGAAATGGGGACACGTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16869216 AAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
16869281 ATACAAGGATCACATCTACCAAG-TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
*
16869345 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
196 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
16869410 GCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAATT
261 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
16869475 ATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACCGCTTGAGCATCCCGTCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
16869540 GTCGGCGTAGTGCCCGCCCACCCGCCCGTTCGTTTCGTCGATTGGCTTACGG-ATACGGAGTTCA
391 GCCGACGTAGTGCCCG----CCCGCCCGTTCGTTTCGTCGATTGGCTTA-GGCATACGGAGTTCA
* * * * * *
16869604 TTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGTAGCAGGAATGGCAGCACGTAGAAGGGT
451 TTCCCAGTCTAAGATCAGACTGGATCGAGGG-TGT-G-ATC--G-A---CAGCACGCAGAGGGGG
* * * *
16869669 ACCCGACCGCTCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTT
507 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * * * * *
16869734 CGTGGGTTGACTTAGGCACACAGAGTTCATTCCTAGTCTAACCATATGGAGTTCTTTCCTAGTCT
572 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCT
** ** * * *
16869799 AAGATTGGACCAGATTGAGGTTTGCGGCAGCACATGCTGGGCTTGGGCAT-GTGCTGGTGCCGCA
637 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC-TGGT-CCGG-G--GCA
** * * * *
16869863 TTTTTCTTTCGTCGGAGCATTGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGT
697 -----CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
*
16869928 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCC
757 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16869993 TATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGC
822 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
16870036 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCTTTAAAGTTTCTGCAATGGGGACACTTTTTTC
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16870101 AAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
66 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
16870166 ATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAA----ATCC---------TT------T--C
131 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* *
16870210 -AA---AAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
196 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
16870271 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
261 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
16870336 ATGAAGATGTGACTAAACCCGCCAACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
16870401 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGA-TGGCTTAGGCATATGGAGTTCATTCC
391 GCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTC-GATTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** * * * *
16870465 TAGTCCAAGATCGGACCGGACTGAGGATTGCAGCAGTACGATTGATAGCACGTAGAGGGAGACCC
455 CAGTCTAAGATC--A---GACT--GGATCG-AG-GGTGTGATCGACAGCACGCAGAGGGGGACCC
* * * * * * * *
16870530 GATCGATCCCCGACTTACGCATCCCACCCATCTGGCCGACTGAGCGCCTGCACGCTCTTTTCGTG
511 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
16870595 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CTAGTCTAAGA
576 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGA
* **
16870659 TCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
641 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC--G---G-GC---TG--G-------
* * * * *
16870724 TTTCGTCGGGGCTA-CATCACCGGAGCATCGTCAGAGAA-CT-A-CGGCGG-ATTGGGTTTCAG-
688 --TC--CGGGGC-ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * ** **
16870783 CAATCGGGGGGGTCGGGGGGGGTGTGGCGCACATGGATGCACGATGGGTGCTGGGGCTT-GCCCT
748 CGATCGGGGGGG-C-CGGGGGGTGT-GCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
16870847 TATATTGGCCCCCTATCCCTCAATGAAAACCTCAAGAAGTCACACCCCCTTAAAGTGC
809 TATATTGGCCCCCTATCCCTC-AT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
16870905 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
1 ATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16870970 CAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAA
65 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
16871035 AATACAAGGATCACGTTTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCC
130 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * * *
16871100 CGAACCGCAAAAAGTTTCAAAAATCATGAAATATAGAAAATGAGTCGTGTTGCCATGAAACTTCA
195 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*** *
16871165 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAA
260 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
16871230 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
16871295 GGCCGACGTAGTGCCCGCCTGCCCGCCCACCCGTTAGTTTTGTTGGTTGGCTTAGGCATACGGAG
390 GGCCGACGTAGTG--C-CC-GCCCG----CCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* * * * **
16871360 TTCATTCCCAGTCTAAGATCAGCCCGGACCGTGGGTTGTGGCAGCAGGATCGACAGCACATAGAG
447 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGG-TGT--------GATCGACAGCACGCAGAG
* * * *
16871425 GGGGACCCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCAAGCTC
503 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
16871490 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCGGTCTAATCTTAC-GAAGTTCATTCCC
568 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAA-TTCATTCCC
*
16871554 AGTATAAGATCAGACCAGACCGAGGGTTGCGG
632 AGTCTAAGATCAGACCAGACCGAGGGTTGCGG
16871586 TAGTAGGATC
Statistics
Matches: 7330, Mismatches: 935, Indels: 702
0.82 0.10 0.08
Matches are distributed among these distances:
856 46 0.01
857 194 0.03
858 89 0.01
859 3 0.00
860 14 0.00
861 598 0.08
862 65 0.01
863 15 0.00
864 26 0.00
865 16 0.00
866 20 0.00
867 49 0.01
868 545 0.07
869 202 0.03
870 132 0.02
871 179 0.02
872 449 0.06
873 323 0.04
874 39 0.01
875 565 0.08
876 116 0.02
877 321 0.04
878 30 0.00
879 6 0.00
880 27 0.00
881 10 0.00
882 56 0.01
883 7 0.00
884 9 0.00
885 253 0.03
886 13 0.00
887 47 0.01
888 22 0.00
889 178 0.02
890 4 0.00
891 6 0.00
892 14 0.00
893 5 0.00
894 98 0.01
895 279 0.04
896 10 0.00
897 13 0.00
898 112 0.02
899 592 0.08
900 296 0.04
901 12 0.00
902 67 0.01
903 520 0.07
904 153 0.02
905 9 0.00
906 7 0.00
907 1 0.00
909 3 0.00
910 2 0.00
911 463 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACTGGATCGAGGGTGTGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGA
CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTGGTCCGGGGCACCATCGCCGGAGCATCGTC
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGC
Found at i:16867988 original size:26 final size:26
Alignment explanation
Indices: 16867951--16868003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16867941 GTTGACTTAG
16867951 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16867977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16868003 G
1 G
16868004 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16868894 original size:25 final size:26
Alignment explanation
Indices: 16868851--16868900 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16868841 TTGACTTACG
16868851 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
16868877 CATAGGGAG-TCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16868901 GATCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16869384 original size:899 final size:896
Alignment explanation
Indices: 16867164--16871585 Score: 5547
Period size: 899 Copynumber: 4.9 Consensus size: 896
16867154 TCGGGCAGGT
* *
16867164 CCGGGGTACCATCACCGGAGCATCGTCGGAGAACCTGACCCA-CGACATTGGGGTTCCGAAAATC
1 CCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA--CAGCGACATTGGGGTTCCGACAA-C
* * * *
16867228 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGGTGGTACTTGGCCCGTATATTGGC
63 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
16867293 CCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
128 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
16867358 TTGCTGCTAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAATGGTCACAAAATCTT
193 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
16867423 GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCATGTATA
258 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* ** ** * * **
16867488 CCAATTTTACGGATAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTGG
323 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
16867553 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCAGGTGAAGGCTTAAGGGACA
388 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16867618 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCC-AAA-
453 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAAC
*
16867681 --A-C--CCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCAGTCGGCATAGTGCCTGCC
518 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-C--T-GGC--CG-G-C-G--
*
16867740 CCTACG-GCCGGCGTAGTGCCCGCCCGCTCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
572 --TA-GTGCC--C-----GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** **
16867804 CGTTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAAGATTGGTAGCACACAGAGGG
627 CATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGG
* * * *
16867869 GGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGGCGGCTGAGTGCCCGCACGCTCGT
691 GGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16867934 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
756 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
16867999 CTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCA
821 CTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCG
16868063 CATTTTTCTTCG
885 CATTTTTCTTCG
* * * * ** * * * * *
16868075 TCGGGGGACCATCCCCGGAGCATCGTCGAAGAACCTGATTGACGGCATTAGAGTTCC-AGCTATC
1 CCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAG-CGACATTGGGGTTCCGA-CAACC
*
16868139 GAGGGGGCCGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
64 G-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16868204 CCCCTATCCCTCATGAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
128 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
***
16868269 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAAAGACACTTTTTTCAAATGGTCACAAAATCTT
193 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * ** * *
16868334 GTACAGTTCGAGTTTTTAGCTGAGTTTTTTTTTGCACACCAAAAAAAAAACAAGGATCACGTTTA
258 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
** * *
16868399 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATATCGAACTGCAAAAA-TATTT
323 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTC
* * * *
16868463 AAAAATCGTAAAAAAAAGAAAACAAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGAC
387 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16868528 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAAATAGAAATATGAAGATGTGCCTAAA
452 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAA
* * * * *
16868593 CCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGTCTGGCGTAGAGCCCGC
517 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
** * **
16868658 CCGCTTGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCGAAGTCTAAGATCAG
582 CCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
16868723 ACCGGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCGCTGGC
647 ACCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
16868788 TTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTACGCA
711 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
16868853 TACGGAGTTCATTCCCAGTCTAAACATAGGGAG-TCATTCCCAGTCTAAGATCAGACCAGATCGA
776 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGA
* * * * *
16868917 GGGTTTCGGTAGCACATGCTGGGCTCGAGCATGTGCTGCTGCCGTATTTTTCTTCA
841 GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
** * *
16868973 CCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACTAGCGACATTGGGGTTCCGACGACCG
1 CCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC-AGCGACATTGGGGTTCCGACAACCG
16869038 GGGGGCCAGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
65 GGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
16869103 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
127 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
16869168 TTTGCTGCCAGTAGCCAGTAAAGTGTGTGAAATGGGGACACGTTTTTCAAATGGTCTCAAAATCT
192 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
16869233 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
257 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
16869298 ACCAAG-TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC
322 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
16869362 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGAC
387 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
16869427 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAATTATGAAGATGTACCTAAA
452 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAA
* * *
16869492 CCCACCTACCACCCTATCGATCCACCGCTTGAGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGC
517 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* ** *
16869557 CCACCCGCCCGTTCGTTTCGTCGATTGGCTTACGG-ATACGGAGTTCATTCCCAGTCTAAGATCA
582 CCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
16869621 AACCGGATCGAGGGTTGTGGTAGCAGGAAT-GGCAGCACGTAGAAGGGTACCCGACCGCTCCCCG
646 GACCGGA-CGAGGGTTGTGGCAGCAGG-ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCG
** * *
16869685 GCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
709 GCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * * * * *
16869750 CACACAGAGTTCATTCCTAGTCTAACCATATGGAGTTCTTTCCTAGTCTAAGATTGGACCAGATT
774 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC
* * *
16869815 GAGGTTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTT--
839 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * * *
16869871 TC---G-----T---CGGAGCATTGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCG
1 CCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAG-CGACATTGGGGTTCCGACAACCG
*
16869925 GGTGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCC
65 GG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
16869990 CCCTATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
16870055 TGCTGCCAGTAGGCTTTAAAGTTTCTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
194 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
16870120 TACACTTTGGGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
259 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * *
16870185 CAGGTTTGGGGCCAAAA----ATCC---------TT------T--C-AA---AAAAAAGTTTCAA
324 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
16870225 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
389 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** *
16870290 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACC
454 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACC
* * *
16870355 CGCCAACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
519 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
16870420 GCCCG----CTCGTTTCGTCGGATGGCTTAGGCATATGGAGTTCATTCCTAGTCCAAGATCGGAC
584 GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * * * *
16870481 CGGACTGAGGATTGCAGCAGTACGATTGATAGCACGTAGAGGGAGACCCGATCGATCCCCGACTT
649 CGGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
16870546 ACGCATCCCACCCATCTGGCCGACTGAGCGCCTGCACGCTCTTTTCGTGGGTTGACTTAGGCATA
713 ACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** *
16870611 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CTAGTCTAAGATCGGACTGGACCGAGG
778 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGG
* *
16870675 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCG
843 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * * *
16870729 TCGGGGCTA-CATCACCGGAGCATCGTCAGAGAA-CT-ACGGCG-GATTGGGTTTCAG-CAATCG
1 CCGGGGC-ACCATCACCGGAGCATCGTCGGAGAACCTGACAGCGACATTGGGGTTCCGACAA-CC
* ** **
16870789 GGGGGGTCGGGGGGGGTGTGGCGCACATGGATGCACGATGGGTGCTGGGGCTT-GCCCTTATATT
64 GGGGGG-C-CGGGGGGTGT-GCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
16870853 GGCCCCCTATCCCTCAATGAAAACCTCAAGAAGTCACACCCCCTTAAAGTGCATTTGAGATTTTA
125 GGCCCCCTATCCCTC-AT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16870918 CAGGTTTGCTGCCAGTAGCCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAA
188 CAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
16870983 AATCTTGTACGCTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
252 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
16871048 CGTTTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
317 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* * * *
16871113 GTTTCAAAAATCATGAAATATAGAAAATGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAA
382 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
16871178 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGC
447 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGC
* *
16871243 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
512 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * *
16871308 CCCGCCTGCCCGCCCACCCGTTAGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
577 CCCGCCCGCCCGCCCA--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
16871373 TAAGATCAGCCCGGACCGTGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGACCCGACCA
638 TAAGATCAGACCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCG
* *
16871438 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCAAGCTCGTTTCGTGGGTTG
702 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * * *
16871503 ACTTAGGCATATGGAGTTCATTCCCGGTCTAATCTTACGAAGTTCATTCCCAGTATAAGATCAGA
767 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
16871568 CCAGACCGAGGGTTGCGG
832 CCAGATCGAGGGTTGCGG
16871586 TAGTAGGATC
Statistics
Matches: 3046, Mismatches: 378, Indels: 181
0.84 0.10 0.05
Matches are distributed among these distances:
856 76 0.02
857 178 0.06
858 2 0.00
861 199 0.07
864 7 0.00
865 14 0.00
866 12 0.00
867 37 0.01
868 24 0.01
869 74 0.02
870 121 0.04
873 2 0.00
874 3 0.00
882 2 0.00
883 2 0.00
885 239 0.08
886 13 0.00
887 44 0.01
888 5 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 2 0.00
895 198 0.07
897 7 0.00
898 125 0.04
899 618 0.20
900 315 0.10
901 1 0.00
903 186 0.06
904 31 0.01
905 1 0.00
906 5 0.00
910 4 0.00
911 451 0.15
912 4 0.00
913 1 0.00
915 3 0.00
916 2 0.00
918 4 0.00
919 31 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAGCGACATTGGGGTTCCGACAACCGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
GACGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTT
GCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
Found at i:16870642 original size:26 final size:25
Alignment explanation
Indices: 16870606--16870657 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16870596 GTTGACTTAG
16870606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
16870632 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
16870657 G
1 G
16870658 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:16871687 original size:185 final size:185
Alignment explanation
Indices: 16871350--16871774 Score: 557
Period size: 185 Copynumber: 2.3 Consensus size: 185
16871340 GTTGGCTTAG
* * * *
16871350 GCATACGGAGTTCATTCCCAGTCTAAGATCAGCCCGGACCGTGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
16871415 GCACATAGAGGGGGACCCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCTC
66 GCACATAGAGAGGGACCCGACCAATCCCCGACTTACGCATCCCGCCCATCTGGCCAGCTGAGCTC
* * * *
16871480 CCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCGGTCTAA
131 CCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16871535 TCTTACGAAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* ** * * * *
16871600 GGATGTAGAGAGGGACCCGATCGATCCCCGACTTAGGCATCCCGCCTATCTGGCCAGCTGAG-TG
66 GCACATAGAGAGGGACCCGACCAATCCCCGACTTACGCATCCCGCCCATCTGGCCAGCTGAGCT-
* *
16871664 CCCACACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16871720 GCATACGGAGTTCATT-CTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
16871775 CATACTGGGC
Statistics
Matches: 203, Mismatches: 36, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
184 34 0.17
185 169 0.83
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACATAGAGAGGGACCCGACCAATCCCCGACTTACGCATCCCGCCCATCTGGCCAGCTGAGCTC
CCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16871724 original size:26 final size:25
Alignment explanation
Indices: 16871694--16871745 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16871684 GTTGACTTAG
16871694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
16871720 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
16871745 G
1 G
16871746 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:16873001 original size:26 final size:26
Alignment explanation
Indices: 16872972--16873024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16872962 GTTGACTTAG
16872972 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16872998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16873024 G
1 G
16873025 ATTCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16874680 original size:899 final size:900
Alignment explanation
Indices: 16872792--16890125 Score: 14005
Period size: 899 Copynumber: 19.2 Consensus size: 900
16872782 CGTCCATCCT
* * * * *
16872792 CTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCATACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* ** * * * ** * *
16872857 GGTTACGGCAGCAGGATTGGCAGCACGTAGAGGGGGACTCGACTGTCCCCAGCTTGCACATCCCG
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGACAATCCCCGGCTTGCGCATCCCG
* * * * * *
16872922 CCCCTATGGCCAGTTGAGCGCCCGCATGCTCGTTCCATGGGTTGACTTAGGCATACGAAGTTCAT
131 CCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
16872987 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTC-GACCAGACCGAGGGTGGCAGCA
196 TCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCGAGGGTTGTGGCA
* * * * ** * *
16873051 GCATATGCTGGGCCCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTTGGGACACCATCGCCAGAG
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* ** * ** * * *
16873116 CGTCGTTGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGATGGGT
325 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGT
* *
16873181 ATGCGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
390 A---GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * *
16873246 AAACTCTAGAACTCACACCCCCTTAAAAAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCAA
452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
16873311 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCGTTTT
517 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
16873376 TAGCTGAATTTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCA
582 TAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
16873441 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCGAAAATCCTGAAAAAT
646 AAACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
16873506 AAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
711 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
16873571 AAGCCATAAAAATGCCATTGGCATGCAGAAATATGAACATCTGCCTAAGCCCACCTACCACCCTA
776 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
16873636 TCGATCCACGGCTTGCGCATCTCGTCTC-CTTGGCCGGCATAGTGCCTGACCGCCCGTCCG
841 TCGATCCACGGCTTGCGCATCTCGTCTCTC-TGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * * * ** *
16873696 CTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTTATTCCCTGTCTAAGAT-TAGACTGGACTGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* * * *
16873760 GGATTGC-AGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGACAAATCCCCGGATTGTGCATC
65 GGGTTACGA-CAGCAGGATCAGTAGCACGCAGAGGGGGACCCGAC-AATCCCCGGCTTGCGCATC
* * * * **
16873824 CTGCCCCTCTGGCTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTT
128 CCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
16873889 CATTCCTAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGCTGTGA
193 CATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * * * * *
16873954 CAACACATGCTAGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCCGGGCACCATCGTCGG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * *
16874019 AGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGT
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
*
16874083 GT-TCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
388 GTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16874147 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACACGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16874212 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
16874277 AGCTGAATTTTTTTGTGCATGCCACAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * **
16874342 ACTCTTTCTGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG
648 ACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
*
16874407 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
713 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
16874472 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATC
778 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
16874537 GA-CTCACGGCTTGCTCATCTGGTCTCTTTGGACGATGTAGTGCCCGCCCGCCCGCCCG
843 GATC-CACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * *
16874595 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCGAACCAGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * *
16874660 GGTTACGACAGCAGGATCAGTAGCACGCAAAGGGGGACCC-ACTCGATCCCCAGCTTGCGCATCA
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA--CAATCCCCGGCTTGCGCATCC
* * * ** *
16874724 TGCCCCTTTGGCCGGTTGAGTGCCCGCGTGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
16874789 ATTGCCAGTCCAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCGAGGGTTGTGGC
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
*
16874854 AGCACATGC-GAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TCTGTCGGGGCACCAT---C-
259 AGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATCGCCG
*
16874913 --G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGGGGTG
322 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT-
* *
16874971 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
386 -GTGT-AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16875036 GCAAACCTTGAGAACTCA-AGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
449 TCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
16875100 GCCATTAAAGTGTCTAAAATGGGGATACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
513 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * **
16875165 -CTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACTAAGTTTGGAA
578 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
16875229 CCAAAACTCCTTCCGAAAAAATGTTAAAAACTCCCGAACCGTAAAATGTTTCAAAAATCAAGAAA
643 CCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
16875294 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
708 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * *
16875359 TACAAGATATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACC
773 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * *
16875424 CTATCGGTCCATGACTTATGCATCTCGTGTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACT
838 CTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C-
16875489 CG
899 CG
* * * *
16875491 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGGTC-AGACC-GAACTG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACCG
* * * * * * * * * *
16875554 ACGATTGCTG-TAGCAGGATCAGCAACACCCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCAT
64 AGGGTTAC-GACAGCAGGATCAGTAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCAT
* *
16875618 CGCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
127 CCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
16875683 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGAAC-GCACTGAGGGTTGC
192 TCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGT
* * * * * *
16875747 GGCAGCACATGATGGGCACGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCATCACC
256 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * * **
16875812 GGAGCATCGCCGGAGAACCTGATCGACGACATTGGGGTTTCGACGATCGGGGGTTCCGGGGGGGT
321 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* * *
16875877 GTG-CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATC
386 GTGTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
16875941 AAACCTCAACAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
451 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
16876006 TTTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCAAAAAATCTTGTAAACTTTGAGTTT
516 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16876071 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGTCCA
581 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
16876136 AAATTCCTTTCGAAAAAATTCTAAAAGA-TCCCAAACCG-CAAAAGTTTCAAAAATTGTGAAAAA
646 AAACTCCTTCCGAAAAAATTTTAAAA-ACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
16876199 TAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
16876264 CAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
775 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
16876329 ATCGATCCATGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCACCCGCCCGCCCG
840 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* *
16876390 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGAACCAGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* *
16876455 GGTTACGGCAGCAGGATC-GATAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCC
66 GGTTACGACAGCAGGATCAG-TAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCATCC
* * * * ** *
16876519 CGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCATACGTTGACTTAGTCATACGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
16876584 ATTCCTAGTCTAAGCATACA-GAGTTCATT-CCAATCTAAGATCGAATCGGACCAAGGGTTGTGG
194 ATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * *
16876647 CAGCACATGCTGGGTTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* ** * * * * * * ** * * *
16876712 AGCAT--ACGGAGTTCAT-TCC--CAGC-CT-AGGAT-CG--GA-C---CAGACC-GAGGGTTGC
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG-
* * * * ** * * * * *** *
16876762 GGTAGCACAT-ACTGGGC-TTCGGCATGTGCTGGTGC-T-GCATTTTTCTTCGTCGGGTCA-CCA
387 TGTAGCACATGA-TGTGCGAT-GG---GTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCC
* * * ** * ** ***
16876822 TCATCGGAGTGTCACC-GGAGAACCTAACCGACGGCATT---G-GGTTTTCGATGATCGGGGGGG
446 TCATC--A----AACCTCGAGAA-CTCA-C-ACCCCCTTAAAGAGCATTT-GA-GAT-----TTT
* * *** * * * *
16876882 CCGGGAGGTGTGC-GCACA-T-G--ATGTTCGGTGGGTGCTGGTACT-TGG-CCCTTATATTGGC
495 AC---AGGTTTGCTGC-CAGTAGCCAT-TAAAGT--GT-CT-GAAATGGGGACACTT-T-TT---
** ** * ** * ** * *
16876940 CTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTT-G-AGATTTTATAG
546 -TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA----CTT--CGAGTTTTTAGCTGAATTT-T--
**** * * ** * *
16877003 GTTTGCTGCCAGTAGCCATTAAAGTGTTGA-AATGGGGA-CACTTTTTTCAA--AT-GGTCACAA
594 -TTTG-TG-CA-T-GCCA--AAAAAAAT-ACAA---GGATCACGTCTACCAAGTTTGGGGC-CAA
* * * * * **** * * ** ***** **
16877063 AA-T-CTT--G--TACACTTT---GAGT-TTTTAGC-TGAATTGTTTTGTGCATGCCAACAAAAA
647 AACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAAT--CATGAAAAA
* * * *** ** *** ***
16877117 TACAAGGATC-ACGTCTACCAAGTTTGGGGTGAAGACTCCTTC-CGAAAAAATTTTAAAAAATCT
710 TAGAA--AACGA-GTC-ATC----TTGCCATGAA-A---CTTCACG-TGAAGGCTTAAGGGA-C-
** ** * ** *** * * *
16877180 CGAACCGTAAAAAGTTTAAAAAATCATGAAAAATATAAAATGAGTCGTCTTGCCATGAAACT-TC
760 C--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-GGCATTG-G-C-AC--G-CA-GAAA-TATG
* * * ** * * *** * * *
16877244 AAGTAAAG-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
811 AAG--ATGTGCCTAA---ACC--------CACCTACCA-CCCTATCGAT-CCA-CGGCTTGC-G-
* * * * ** * * *** *** *
16877308 AATATGAAGATGTGC-CTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
858 CATCT--CG-TCT-CTCT-GGCCGACGTAGTGCCCGCCCG--CC-C-GC--CCG
* *** * ** * **** *** * *** * ***
16877361 CATCCCGTCTC-TCTGACCGGCGTAGTGCCCGACCGCCCACCCGCCCACTCGCCCGCTCGTTTCA
1 C-T--CGTTTCGTC-GGTTGGCTTAG-G-CATACGGAGTTCATTCCCAGTC-TAAGATCGAACCA
* * * * * * * * * * ***
16877425 -TCGGTTGGCTTAGGGATA-C-GGAGTTCATTCGCA-GTCTAAGATTGGATTGGA-TCGATGGT-
59 GACCG-AGGGTTA-CGACAGCAGGA--TCAGTAGCACG-C--AGA--GG--GGGACCCGACAATC
** ** * * * * * ** *
16877484 TGCGGC-AACAGGAT-CGGCAGCACACAGAGTGGGACTGAGCGCCTGACCCTCTAGCCGACTGAG
113 CCCGGCTTGC-GCATCCCGC--CCCTCTG-GCCGG-TTGA--G-C-G-----C---CCG-C--A-
** * *
16877547 CGCCCGCAAGCTCGTTTCGTGTTTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG
157 ------C--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAG
* * ** *
16877612 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGCAGCAGCATATGCTGGGCTCGGGC
214 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * * * ** * *
16877677 ATGTGTTGGTGCCGCATTTTTCTTTGCTGGGACACCATCGCCAGAGCAT--ACGGAGTTCAT-TC
279 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * * * * * ** * * * *
16877739 C--CAGC-CT-CGGAT-CG--GA-C---CGGACC-AAGGGTTGCGGTAGCACAT-ACTGGGC-TT
344 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG-TGTAGCACATGA-TGTGCGAT
* ** * * * * * *** *
16877790 CGGCATGTGCTGGTGC-T-GCGTTTTTCTTCGTCGGGTCACC-AT-CGTCGGAGTGTCACC-GGA
407 -GG---GTGCTGGTACTTGGCCCTTAT-AT--T--GGCCCCCTATCCCTC--A-TCAAACCTCGA
* ** *** ** * *** ** *** * ***
16877850 GAACCTGAC-CGGCGGGATTG-G-GTTTCCGATGATCGGAGGGGGGGGCCGGGGGGTGTACGCAC
460 GAA-CTCACACCCCCTTAAAGAGCATTT--GA-GATTTTACAGGTTTG-C--TGCCAGTA-GC-C
** * * * * ** ** *
16877912 AGGATGTTCAGTGGGTGCTGGTACT-TGG-CCCTTATATTGGCCTCCTATCCCTCATCAAACCTC
516 ---AT-TAAAGT--GT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATC
** * ** *
16877975 GAGAACTCACACCCCCTTAAAGAGAATTT-G-AG-ATTTTACAGGTTTGCTGCCAGTAGCCATTA
564 TTG---T-ACA----CTT--CGAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T-GCCA--A
**** * * ** * * * * *
16878037 AATTGTTGA-AATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA-T-CTT--G--TACACTTT
608 AAAAAAT-ACAA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTT
* * **** * * ** **** ** * * *
16878091 ---GAGT-TTTTAGC-TGAATTGTTT-TTGCATGCCAACAAAAATATGAGGATC-ATGTCTACCA
668 AAAAACTCCCAAACCGTAAAAAGTTTCAAAAAT--CATGAAAAATA-GA-AAACGA-GTC-ATC-
** ** *** *** ** ** *
16878149 AGTTTGGGGCCA-G-AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
726 ---TT---GCCATGAAACT--TCACG-TGAAGGCTTAAGGGA--CC--ATTGTATGAA-TTT-AC
** * * * * ** *
16878212 AAATCGTAAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT-TAAAGGACC
776 AAGCCAT-AAAAAT-G---GC-A-TTGGCACG-CA-GAAA--T-A--TGAA-GATGT----G-CC
* *** ** * *** * * * ** * * * *
16878276 ATTATATGAATTTA-CAGGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC-CTAA
821 --TAAACCCACCTACCA--CCCTATCGAT-CCA-CGGCTTGC--GCATCT--CG-TCT-CTCT-G
* * * *** *
16878339 ACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG
873 GCCGACGTA-GTGCC---CG--CC-C-GC---C-C-GCCCG
* * * * ** * ** ** * * * * *
16878380 TCTC-TCTGGCCGACGTAGTGC-CCGCCAGCCCGCCTGTTCGTT-TCA-TC---GGTTG-ACTTA
1 -CTCGTTTCGTCG--GTTG-GCTTAGGCA-TACG-GAGTTCATTCCCAGTCTAAGATCGAAC-CA
* ** * * * *
16878437 GGCATATGGAGTTCATTC-CCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCGA
59 GACCGA-GG-GTT-A--CGACAG-C-AGGATCAG--TAG--C-A-C------GCAG-A-G---G-
* * * ** *
16878501 CAGACGCAGAGGGGGTCCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCA
99 --G--G--GA------CCCGA-CAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCG
* *
16878566 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
151 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGA
* * * ** * **
16878631 GTTCATTCCCAGTCTAAGATCAGATCGGATTGATGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
216 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAT
* ** ** * * *
16878696 GTTGCTAGTGATGC-TTTTTCTTCATCGAGGCCACCA-CGTCGGGACGCATCGTCGGAGAACCTG
281 G-TGCTGGTGCCGCATTTTTCTTCGCCG-GGGCACCATCG-CCGGA-GCATCGCCGGAGAACCTG
* * * * * *
16878759 A-TGACGACCAATGGGGTTCCGATGATCGGGGAGG-CGAGGGGGGTGTG-CGCACATG-TGTGC-
342 ACCGACG-GCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGTAGCACATGATGTGCG
* * *
16878819 AGTGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAGCCTCGAAAACTCACA
405 A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
16878884 --CCCTTAAATAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTCTCTGAAATG
469 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * ** *
16878947 GGGACACTTTTTTC-AATGGTCA-AAAATCTTGTTACGCTT-AAGTTTTTTAGCAAAATATTTTT
534 GGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAG-TTTTTAGCTGAATTTTTTT
* * *
16879009 ATGC-TAGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGACA
597 GTGCAT-GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-A
* * * * *
16879073 AAAATTGTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAGTTATGAAAAATAGAAAACGAGTCGT
660 AAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
**
16879138 CTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
725 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
16879203 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACATCTT
790 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16879268 GCGCATCCCGTCTCTCTGGCTGACGTAGTGCTCACCCGCCCGCCCG
855 GCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* ** * * *
16879314 CTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAATATC-AGACCGGACCAA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* ** * * * * * *
16879378 GGGTTCCGGTAGCAGGATCGGCAGCACGCAGAAGGGGACTCGACCGATCCCCGGCTTACGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCC
* * * *
16879443 CGCCCTTCTGGCCGGCTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
16879508 ATTCCCAGTCTAAGCATACA-AAGTTCATTCCCAGTCTAAGATCGGGCCAGATCAAGGGTTGCGG
194 ATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * ** ** *
16879572 CAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGTGTTTTTCTTCGCCGGATCACCATCGTCGG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * * *
16879637 AGTATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTTCGACAATCGGGGGGGCC-GGGGGGTGT
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* ** * * *
16879701 G-CGCACATGATGTTTGGTGGGTGCTGG-ACTTGGCCCTTATATTGGCCTCCTATGCCTCATCAA
388 GTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16879764 ACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * *
16879829 TAAAGTG-CTAAAATGGGGACACTTTTTCCAAATGGTCACAAAATCATGTACACTTTGATTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
** * **
16879893 AGCTGAATTTTTTTGTGCATGCCAACTAAAATACAAGGATCACATCTACCAAGTTTGGGGTGAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
16879958 ACGCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATA
648 ACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCA-AAAATCATGAAAAATA
* *
16880022 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
712 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
16880087 AGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTAT
777 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
16880152 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGT--------GCCCGCCCG
842 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * * * * *
16880203 CTCGTTTCGTTGGTTGGTTTAGGCATACAGAGTTCATTCCTAGTCTAAGATC-AGATCGGATCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
** ** * * * * * *
16880267 GGGTTACGGGAGCAAAATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCATCC
* * * *
16880332 CGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * * *
16880397 ATTCCCAATCTAAGCATGCGGAGTTCATTACCAGTCTAAGTTCGGATCGGACCGAGGGTTGTGGC
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* * * ** * *
16880462 AGCAAATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCAGA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * * * *
16880527 GCGTCGCCGGAGAACCTGTCCGGCGGCATTGGGGTTCCGGCGATTGAGGGGGCC--GGGGG-GTG
324 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
16880589 TACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
389 TA-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
16880654 TCCTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16880719 TAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
16880784 CGTTGACTTTTTTTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * **
16880849 AATCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAG
648 ACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
*
16880913 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAA
713 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
16880978 GCCATAAAAATGGCATTGGAATGCAGAAATATGAATATGTGTCTAAACCCACCTACCACCCTATC
778 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
16881043 GATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCCCG
843 GATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* *
16881101 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCTGACCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* ** * * ** * * *
16881165 GGGTTGCGGTAGCAGGATCGGCAGCACATAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCATCC
** * * * *
16881230 TACCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
16881295 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTG-GAC
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTG-G
* * ** * * *
16881359 CACCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCACCGGGGCACCATCGTCGA
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * *
16881424 AGCATCACCGGAGAAGCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCTGGGGGGGCG
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTG
* ** *
16881488 TG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTTCTACCCCTCATCA
387 TGTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
16881551 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCA
452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
16881616 TTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
517 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
16881681 TAGTTGAATTCTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
582 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
16881746 AACTCCTTTCGAAAAAATTTTAAAAAAC-CCCGAACCGTAAAAAGTTGT-GAAAATCGTGAAAAA
647 AACTCCTTCCGAAAAAATTTT-AAAAACTCCCAAACCGTAAAAAGTT-TCAAAAATCATGAAAAA
* * * **
16881809 TAAAAAATGAGTCGTCTTGCCATGAAACTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
16881874 CAAGCCATAAAAATGGCATTGGCATGCAGAAAGATGATGATGTGCCTAAACCCACCTACCACCCT
775 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
16881939 ATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGTCCGTCCG
840 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* *
16882000 CTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCTGACCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* ** * * ** * * *
16882064 GGGTTGCGGTAGCAGGATCGGCAGCACATAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCATCC
** * * * *
16882129 TACCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * ***
16882194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTGCACC
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* * ** * * *
16882259 ACCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCACCGGGGCACCATCGTCGAA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * *
16882324 GCATCACCGGAGAAGCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCTGGGGGGGCGT
324 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGT
* ** *
16882388 G-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTTCTACCCCTCATCAA
388 GTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16882451 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
16882516 TAAATTGTCTAAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
16882581 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTTTACCAAGTTTTGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * * *
16882646 A-TCCCTTCCAAAAAAAGTTTAAAAAATCCGAAACCGTAAAAGGTTTCGAAAATCGTGAAAAATA
648 ACT-CCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
16882710 -ACAAACGAGTCATTTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
712 GA-AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
16882774 AAGCCATAAAAATGGCATTGGCATGCAGAAAGATGATGATGTGCCTAAACCCACCTACCACCCTA
776 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
16882839 TCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGTCCGTCCG
841 TCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * *
16882899 CTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-ATATCGGACTGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* * * * * * * * * *
16882963 GGGTTGCGACAGTAGGATCGGCAGCACGCAGAGGGGTACCCGACCGATCCTCGGCTTACGCAACT
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCC
* * * * * * *
16883028 CGCCCCTCTAGCTGGCTGAGCGCTCGCACACTCATTTCATGGGTTGAC-T-----TA--G-G--C
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
16883082 A-T---A--C---G----A--AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGT
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* *
16883132 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTT-GTCGGGGCACCATCGTCGG
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGCCGGGGCACCATCGCCGG
* * * * * * * *
16883196 AGCATCGTCGTAGAACCTGACTGACGG-TTTAGGGTTCTGACAATCGGGGGGGCCGGGTGGGTGT
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* *
16883260 GT-GCACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCA
388 GTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16883324 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16883389 TAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
16883454 AGTTGAATTCTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
16883519 ACTCCTTTCGAAAAAATTTTAAAAAAC-CCCGAACCGTAAAAAGTTGT-GAAAATCGTGAAAAAT
648 ACTCCTTCCGAAAAAATTTT-AAAAACTCCCAAACCGTAAAAAGTT-TCAAAAATCATGAAAAAT
* * * **
16883582 AAAAAATGAGTCGTCTTGCCATGAAACTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
711 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * * *
16883647 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGACGGTGTGCCTAAAACCAGCTATCACCCTA
776 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
***
16883712 TCGATCCACGGCTT----A----G------T-GCC--C-----GCCCGCCCGTTAGCCCG
841 TCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * *
16883750 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGA
* ** * * * * *
16883814 GGGTTGCGGTAGCAAGATCGGTAGCATGCAGAGTGGGACCCGATCAATCCCCGGCTTGTGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCC
* * * *
16883879 CGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
16883944 ATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGC
194 ATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* * * * * *
16884009 AGCACATGCTGGGCTTGGGCATTTTCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * * * *
16884074 GCATCGTCGGAGAACCTAACCGGCGGTATTGGGGTTCTGACGATC------G--GGGGGGTTGTG
324 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* * * *
16884131 -CGCACATTATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAA
389 TAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
16884195 CCTCAAGAACTCATAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
454 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
16884260 AAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
519 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * ** ** * **
16884325 GCTGAATTGTTTTG-G--GGCC---AAAACT-C---CTTC-CG---AGAAAATTT----TAAAAA
584 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
16884372 ATCCTGAACC-ATAAAAAGTTTCAAAAA-T-------GGT-GAAA-----AA-------------
649 CTCCT--TCCGA-AAAAA-TTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
16884409 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
16884474 CAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCAT
775 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
16884539 ATCGATCCGCGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCG
840 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCG
** * * **
16884604 CTCGTTTCGTCGGTTGGCTTAGGCATACCTAGTTCATTCCTAGTCTAAGATC-AGACCAAATTGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* * ** ** * * * * * * *
16884668 GGGTTGCGATAATAGGATCAACAGCACGTAGAGGGGGGCCCGGTCGATCACCGACTTGTGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCC-GACAATCCCCGGCTTGCGCATCC
* * * ** * *
16884733 CGCCCCTCTGGTCGGCTAAGCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATATGGAGCTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
16884798 ATTCCTAGTCTAAGCATACA-GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGG
194 ATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * * * *
16884862 CAGCACATGCTAGACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * *
16884927 AGCATCACCGGAGAACCTGACCGACGACATTAGGGTT-CGAGCGAT--AGGGGG-CTGGGGGGTG
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTG
* *
16884988 TG-CGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
387 TGTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
16885052 AACCTTGAGAACTCTCACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCA
452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
16885117 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTT
517 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* ** **
16885182 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAAGTTTCTGGCCA
582 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCA
* ** ** * *
16885247 AAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTCGAAAATCGTGAAAAAT
646 AAACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
16885311 AGAAAACGAGTCGTCTTTCCATGAAACTTAACGTCAAGGCTTAAGGGACCATTGTATGAATTTAC
711 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * * *
16885376 AAGCCATAAAAAAGGCAGTGGCATGTAAAAATATGAAGATGTGCCTAAACTCACCTACTACCCTA
776 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
16885441 TCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCTG
841 TCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCG-CC--C-GCCCGCCCG
* * *
16885505 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATA--AGACCA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-ACCAGACCG
* ** * * * * * * *
16885568 AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGTGGACGCGGCCGATCCCCGGCTTGCGTATC
64 AGGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGAC-CCGACAATCCCCGGCTTGCGCATC
* * * *
16885633 CCGCCCCTCTGGCCGGTTGAGCGCCTGTACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTT
128 CCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
16885698 CACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGG
193 CATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * * * * * *
16885763 TAGCACTTGCTGGGCTCGGGCATGTGCT-ATGGCCACATTTTTCTTCGTCGAGGCACCATCGTCG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCGCCGGGGCACCATCGCCG
** * * * **
16885827 GAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGCGGAA
322 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGT
* * * * *
16885891 GTG-CGCACTTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTGTCCCTCATC
386 GTGTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
16885955 AAACCTCGAGAACTCACCCCCCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAG
451 AAACCTCGAGAACTCA-CACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
16886020 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGT
514 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
16886085 TTTTAGCTGAATTTTGTTT-TGCATGGCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGG
579 TTTTAGCTGAATTTT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * *
16886149 CCAAAACTCCATAAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAA
643 CCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
* * * *
16886214 AATAGAGAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
708 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
16886279 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTGCCACC
773 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
16886344 CTATCGATCCACGGCTTGCGCATGCT-GTTTGTCTGGCCGACGTAATGCCCACCCGCCCGTCCGC
838 CTATCGATCCACGGCTTGCGCAT-CTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C
16886408 CTG
899 C-G
* * * * * ** *
16886411 CTCGTTTCCTCGATTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGA-TTGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * * * *
16886475 GGTTACGACAGCAGGATCAGTAGCACACAGAGGGGGACTCGACCGATCCTCGACTTACGCATCCC
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCCC
* * * *
16886540 ACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTC---------C-TAGG--T--TGAG----
130 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** *
16886587 TT---AG-----GGATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGGCA
195 TTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCA
* * * * * *
16886644 GCACATGCTGGGCTCGTGCATGTGTTGGTGCCACCTTTTTCTTCACCGGGGCACCATCGTCGGAG
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * * * **
16886709 CATCGCCAGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGTGGCCACGGGGGTGTG-
325 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGT
* *
16886773 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAAC
390 AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
16886838 CTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATT
455 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATT
16886901 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
519 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
16886966 GCTGAATTTTTTT-TGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGGTTGGGGCTAAA
584 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAA
** * * * * ** * **
16887029 ACTTTTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAG
648 ACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
16887094 AAAACGAGTCATCCTGCCATAAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAA
713 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
**
16887159 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
778 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * *
16887224 GATCCACGGCTTGCGAATCCCGTCTGTCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCA
843 GATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCG
* * * *
16887286 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* ** * *
16887351 GGTTACGGCAGCAGGATTGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCC
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCCC
* *
16887416 GCCCCTCTGGCCGGCTGAGC-CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
130 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* **
16887480 TTCCCAGTCTAAG-AT--CG-G---A---CC-G-----GAT----------CGAGGGTTACGGCA
195 TTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCA
* * * * *
16887519 GCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAAA
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * * * ** *
16887584 TATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCAAGGTGGCC-GGGGGGTGTG-
325 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGT
* *
16887647 CGCACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
390 AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
16887712 CTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTA
455 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
** *
16887777 AAGTGTCTGAAATGGGGACGGTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
520 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
16887842 CTGAATTTTTTTATGCATGCCAACAAAAGTAC-AGCGATCACGTCTACCAAGTTTGGGGCCAAAA
585 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAA
* * ** * * *
16887906 CTCCTTCCAAAAAAATTTTGAAAAA-T-CCAGAGCCACAAAAAGTTTCAAAATTTATGAAAAAAA
649 CTCCTTCCGAAAAAATTTT-AAAAACTCCCA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
16887969 GAAAACAAGTCGTCTTGCCATAAAACTTCACGTGTAGGCTTAAGGAACCATTGTATGAATTTACA
712 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
16888034 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
777 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
16888099 CG--CCGAC-G--T----A----G------T-GCC--C--A---CTCACCCGCCCGCCCG
842 CGATCC-ACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * *
16888132 CTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTGATTCCCAGTCTAAGATC-AGACCGGACCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* * * ** ** * **
16888196 GGGTTACGGCAGAAAGATTGGTAGCACATAGAAGGGGACCTAACCAATCCCCGGCTTGCGCATCC
65 GGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCC
* * *
16888261 CACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
129 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * **
16888326 ATTCCCAGTCTAAGCATGCA-GAGTTCATTCCCAGTCTAAGATCGGGCCGGACTGAGGGTTGCAG
194 ATTCCCAGTCTAAGCAT-AAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG
* * * *** * * * * *
16888390 TAGAACATGCTAGGCTCGGGCATGTGCTGGTGTTACAATTCTCTTCGTCAGGGCACCATCGCCGA
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * * *
16888455 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCAGGGAGGCCGAGGGGGTAT
323 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * * *
16888520 G-CGCACATGATGTGTGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAT
388 GTAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
16888584 ACCTCGATAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
16888649 TAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * ** *
16888714 AGCTGAATTTTTTTATGCATACCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAA
583 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
16888779 ACTCCTTCCGAAAAAGTTTTCAAAAA-TCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATA
648 ACTCCTTCCGAAAAAATTTT-AAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
16888842 GAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTCTATGAGTTTACA
712 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
16888907 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
777 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * *
16888972 CGATCCACGGCTTGCGAATCCCGTCTGTCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCA
842 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCG
* * * *
16889035 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * *
16889100 GGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCC
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCCC
* *
16889165 GCCCCTCTGGCCGGCTGAGC-CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
130 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * **
16889229 TTCCCAGTCTAAG--TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATA
195 TTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCA
* * * * * *
16889292 GCACATGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGAGCACCATCGTCGGAG
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * * * * * * *
16889357 CATCACCGGAGAACCTGATCGGCGACATTGGGGTTCCGACGATC-GAGGGGTCAGGAGGGTGTG-
325 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGT
* * *
16889420 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCTCCTATCCCTCATCAAAC
390 AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* ** * *
16889485 CTCGAGAACCCTTACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTA
455 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
16889550 AAGTGTCTTAAATGGGGACAC-TTTTTCAAATGGTC-CTAAAATCTTGTACACATCGAGTTTTTA
520 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTA
* * *
16889613 GCTGACTTTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
584 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
16889678 CTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGA
649 CTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
16889743 AAA-GAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTAGAAG
714 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * *
16889807 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCAGCTACCACCCTATCA
779 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
16889872 ATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--C-----G---GCCCGCCCGCCCG
844 ATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * ** * * * *
16889918 TTTGTTTTGTCGGTTGGCTTAGTTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
** ** * * * * *
16889983 GGTTGTGGTAGCAAGATCAGCAACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCC
66 GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGA-CAATCCCCGGCTTGCGCATCCC
* * * * * *
16890048 ACCCCTCTGGTCGGCTGATG-ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTC
130 GCCCCTCTGGCCGGTTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16890112 ATTCCCAGTCTAAG
194 ATTCCCAGTCTAAG
16890126 ATTGGACCGA
Statistics
Matches: 13700, Mismatches: 2004, Indels: 1472
0.80 0.12 0.09
Matches are distributed among these distances:
828 131 0.01
832 1 0.00
836 1 0.00
841 1 0.00
842 1 0.00
843 3 0.00
845 1 0.00
846 145 0.01
847 58 0.00
848 2 0.00
850 11 0.00
851 162 0.01
852 9 0.00
853 4 0.00
854 324 0.02
855 5 0.00
856 7 0.00
857 7 0.00
858 6 0.00
859 206 0.02
860 4 0.00
862 5 0.00
863 5 0.00
864 6 0.00
865 5 0.00
866 2 0.00
867 2 0.00
868 1 0.00
869 4 0.00
870 204 0.01
871 1 0.00
872 63 0.00
873 741 0.05
874 400 0.03
875 573 0.04
876 425 0.03
877 132 0.01
878 24 0.00
879 227 0.02
880 10 0.00
881 1 0.00
882 1 0.00
883 148 0.01
884 64 0.00
885 20 0.00
886 17 0.00
887 9 0.00
888 64 0.00
889 359 0.03
890 321 0.02
891 137 0.01
892 296 0.02
893 185 0.01
894 8 0.00
895 10 0.00
896 346 0.03
897 304 0.02
898 1071 0.08
899 2346 0.17
900 352 0.03
901 479 0.03
902 72 0.01
903 507 0.04
904 269 0.02
905 344 0.03
906 397 0.03
907 57 0.00
908 3 0.00
909 1 0.00
911 1 0.00
912 3 0.00
916 20 0.00
917 7 0.00
918 15 0.00
919 1 0.00
920 13 0.00
921 3 0.00
922 3 0.00
923 1 0.00
924 8 0.00
925 14 0.00
926 13 0.00
927 4 0.00
928 9 0.00
929 20 0.00
930 9 0.00
931 8 0.00
932 8 0.00
933 12 0.00
934 14 0.00
935 11 0.00
936 9 0.00
937 3 0.00
938 1 0.00
939 3 0.00
940 1 0.00
941 2 0.00
942 1 0.00
943 3 0.00
944 7 0.00
945 6 0.00
946 3 0.00
947 6 0.00
948 7 0.00
949 1 0.00
951 2 0.00
953 4 0.00
954 2 0.00
955 6 0.00
956 11 0.00
957 8 0.00
958 4 0.00
959 7 0.00
960 1 0.00
961 2 0.00
962 2 0.00
963 6 0.00
964 4 0.00
965 13 0.00
966 1 0.00
967 2 0.00
968 5 0.00
969 3 0.00
970 5 0.00
971 4 0.00
972 2 0.00
973 2 0.00
974 12 0.00
975 2 0.00
976 21 0.00
977 17 0.00
978 12 0.00
979 6 0.00
980 10 0.00
981 17 0.00
982 9 0.00
983 24 0.00
984 16 0.00
985 10 0.00
986 5 0.00
987 3 0.00
988 3 0.00
989 3 0.00
990 6 0.00
991 4 0.00
992 6 0.00
993 10 0.00
994 14 0.00
995 7 0.00
996 4 0.00
997 3 0.00
998 1 0.00
999 1 0.00
1000 3 0.00
1001 7 0.00
1002 1 0.00
1003 3 0.00
1004 4 0.00
1005 4 0.00
1006 5 0.00
1007 1 0.00
1008 60 0.00
1009 201 0.01
1010 6 0.00
1011 8 0.00
1012 165 0.01
1013 204 0.01
1014 10 0.00
1015 6 0.00
1016 9 0.00
1017 137 0.01
1018 25 0.00
1019 16 0.00
1020 4 0.00
1021 13 0.00
1022 8 0.00
1023 6 0.00
1024 202 0.01
1025 130 0.01
1026 176 0.01
1027 181 0.01
1028 129 0.01
1029 125 0.01
1030 178 0.01
1031 119 0.01
1032 119 0.01
1033 85 0.01
1034 108 0.01
1035 99 0.01
1036 86 0.01
1037 57 0.00
1038 46 0.00
1039 59 0.00
1040 41 0.00
1041 71 0.01
1042 65 0.00
1043 92 0.01
1044 80 0.01
1045 60 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
GGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGACCCGACAATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGC
ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGTA
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
Found at i:16874812 original size:26 final size:26
Alignment explanation
Indices: 16874776--16874828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874766 GTTGACTTAG
* *
16874776 GCATATGGAGTTCATTGCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
16874802 GCATACGGAGTTCATTCCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
16874828 G
1 G
16874829 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCCAA
Found at i:16875708 original size:26 final size:26
Alignment explanation
Indices: 16875672--16875724 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16875662 GTTGACTTAG
16875672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16875698 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16875724 G
1 G
16875725 ATCAGAACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16876602 original size:26 final size:25
Alignment explanation
Indices: 16876572--16876622 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
16876562 TTGACTTAGT
* *
16876572 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCC-AATCTAAG
16876598 CATACAGAGTTCATTCCAATCTAAG
1 CATACAGAGTTCATTCCAATCTAAG
16876623 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (25 bp):
CATACAGAGTTCATTCCAATCTAAG
Found at i:16876802 original size:117 final size:116
Alignment explanation
Indices: 16876596--16876830 Score: 303
Period size: 117 Copynumber: 2.0 Consensus size: 116
16876586 TCCTAGTCTA
* * * * *
16876596 AGCATACAGAGTTCATTCCAATCTAAGATCGAATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 AGCATACAGAGTTCATTCCAACCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCACATACTGGG
16876661 TTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGG
66 TTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGG
* * * * * *
16876712 AGCATACGGAGTTCATTCCCAGCCTAGGATCGGACCAGACCGAGGGTTGCGGTAGCACATACTGG
1 AGCATACAGAGTTCATT-CCAACCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCACATACTGG
* * *
16876777 GCTTC-GGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGTCACCATCATCGG
65 G-TTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGCCGGGGCACCATCACCGG
16876829 AG
1 AG
16876831 TGTCACCGGA
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
116 17 0.17
117 82 0.80
118 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (116 bp):
AGCATACAGAGTTCATTCCAACCTAAGATCGAACCAGACCAAGGGTTGCGGCAGCACATACTGGG
TTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGG
Found at i:16877615 original size:26 final size:26
Alignment explanation
Indices: 16877579--16877631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16877569 TTTGACTTAG
*
16877579 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16877605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16877631 G
1 G
16877632 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16877814 original size:117 final size:117
Alignment explanation
Indices: 16877604--16877817 Score: 286
Period size: 117 Copynumber: 1.8 Consensus size: 117
16877594 TCCCAGTTTA
* * * * *
16877604 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGCAGCAGCATATGCTGG
1 AGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCAAGGGTGGCAGCAGCACATACTGG
*
16877669 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCTGGGACACCATCGCCAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGACACCATCGCCAG
** * * * *
16877721 AGCATACGGAGTTCATTCCCAGCCTCGGATCGGACCGGACCAAGGGTTGCGGTAGCACATACTGG
1 AGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCAAGGGTGGCAGCAGCACATACTGG
* *
16877786 GCTTC-GGCATGTGCTGGTGCTGCGTTTTTCTT
66 GC-TCGGGCATGTGCTGGTGCCGCATTTTTCTT
16877818 CGTCGGGTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
117 80 0.98
118 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (117 bp):
AGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCAAGGGTGGCAGCAGCACATACTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGACACCATCGCCAG
Found at i:16878625 original size:26 final size:26
Alignment explanation
Indices: 16878596--16878648 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16878586 GTTGACTTAG
16878596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16878622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16878648 G
1 G
16878649 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16879797 original size:898 final size:897
Alignment explanation
Indices: 16877721--16890125 Score: 15131
Period size: 899 Copynumber: 14.0 Consensus size: 897
16877711 CCATCGCCAG
* ** * * *
16877721 AGCATACGGAGTTCATTCCCAGCCTCGGATCGGACCGGACCAAGGGTTGCGGTAGCACATACTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * **
16877786 GCTTC-GGCATGTGCTGGTGCTGCGTTTTTCTTCGTCGGGTCACCATCGTCGGAGTGTCACCGGA
66 GC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * *
16877850 GAACCTGACCGGCGGGATTGGGTTTCCGATGATCGGAGGGGGGGGCCGGGGGGTGTACGCACAGG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC----GGGGGGGCCGGGGGGTGTGCGCACATG
* *
16877915 ATGTTC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGA
191 ATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
16877979 ACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGT-
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
16878043 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** * *
16878108 GTTTT-TGCATGCCAACAAAAATATGAGGATCATGTCTACCAAGTTTGGGGCCAGAACTCCTTTC
385 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTC
* * *
16878172 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGT
449 CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGT
* * *
16878237 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAGGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16878302 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
16878367 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCTGTTCGTTTCATCGGTTG
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * ** * *
16878432 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
* * * * * * *
16878497 TCGACAG-ACGCAGAGGGGGTCCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACT
773 TCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16878561 GAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *
16878621 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGATGGTTGCAGCAGCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * **
16878686 GCTCGGGCATGTTGCTAGTGATGC-TTTTTCTTCATCGAGGCCACCA-CGTCGGGACGCATCGTC
66 GCTCGGGCATG-TGCTGGTGCCGCATTTTTCTTCACCG-GGGCACCATCGTC-GGA-GCATCACC
* * * * * * *
16878749 GGAGAACCTGA-TGACGACCAATGGGGTTCCGATGATCGGGGAGGCGAGGGGGGTGTGCGCACAT
127 GGAGAACCTGACCGGCG-GCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACAT
* * *
16878813 G-TGTGC-AGTGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAGCCTCGAA
190 GATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
16878876 AACTCACA--CCCTTAAATAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTCT
254 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * **
16878939 CTGAAATGGGGACACTTTTTTC-AATGGTCA-AAAATCTTGTTACGCTT-AAGTTTTTTAGCAAA
319 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAG-TTTTTAGCTGA
* * * * *
16879001 ATATTTTTATGC-TAGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACC
382 ATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * **
16879065 TTCCGACAAAAATTGTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAGTTATGAAAAATAGAAAA
446 TTCC-A-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAA
**
16879130 CGAGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
508 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
16879195 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
573 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * * *
16879260 CACATCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCTCACCCGCCCGCCCGCTCGTTTTGTC
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTC
** * * *
16879325 GGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAATATCAGACCGGACCAAGGGTTCCGGTAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * *
16879390 CAGGATCGGCAGCACGCAGAAGGGGACTCGACCGATCCCCGGCTTACGCATCCCGCCCTTCTGGC
768 CAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
16879455 CGGCTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
833 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
16879520 AGCATACAAAGTTCATTCCCAGTCTAAGATCGGGCCAGATCAAGGGTTGCGGCAGCACATACTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * ** * **
16879585 GCTCGGGCATGTGCTGGTGCTGTGTTTTTCTTCGCCGGATCACCATCGTCGGAGTATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
16879650 AACCTGACCGGCAGCATTGGGGTTTCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
16879715 TGGTGGGTGCTGG-ACTTGGCCCTTATATTGGCCTCCTATGCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16879779 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16879843 GGGGACACTTTTTCCAAATGGTCACAAAATCATGTACACTTTGATTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
16879908 TGCATGCCAACTAAAATACAAGGATCACATCTACCAAGTTTGGGGTGAAAACGCCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * *
16879973 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
16880038 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16880103 TTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
16880168 CATCCCGTCTCTCTGGCCGATGTAGT--------GCCCGCCCGCTCGTTTCGTTGGTTGGTTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * **
16880225 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACGGGAGCAAAATCGGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * *
16880290 GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
16880355 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
16880409 AGCATGCGGAGTTCATTACCAGTCTAAGTTCGGATCGGACCGAGGGTTGTGGCAGCAAATGCTAG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
16880474 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCGTCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
16880539 AACCTGTCCGGCGGCATTGGGGTTCCGGCGATTGAGGGGGCCGGGGGGTGTACGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
16880604 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCAA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16880669 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16880734 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGTTGACTTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16880799 TGCATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
16880864 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
16880929 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16880994 TGGAATGCAGAAATATGAATATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16881059 ATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*
16881124 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGTAGCAGGATCGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
** * ** *
16881189 CACATAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCACC
780 CACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
16881254 CGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
845 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16881307 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTG-GACCACCACATGCTG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-GCAGCACATGCTG
* ** *
16881371 GGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
* * *
16881436 GAAGCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCTGGGGGGGCGTGCGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGAT
** * *
16881500 GTGCGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTTCTACCCCTCATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16881564 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16881629 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTCTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
16881694 TTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAA
* * * *
16881759 AAAATTTTAAAAAACCCCGAACCGTAAAAAGTTGTGAAAATCGTGAAAAATAAAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTT-TCAAAATCGTGAAAAATAGAAAACGAGTCGT
**
16881824 CTTGCCATGAAACTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16881889 GCATTGGCATGCAGAAAGATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
16881954 GCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGTCCGTCCGCTTGTTTCGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
*
16882019 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGTAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
** * **
16882084 GCAGCACATAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
776 GCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16882149 CACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** *
16882206 AGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTGCACCACCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
16882271 GCTCGGGCATGTGCTGGTGTCATATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
16882336 AAGCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCTGGGGGGGCGTGCGCACATGATG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
** * *
16882400 TGCGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCTTCTACCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16882464 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAATTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16882529 ATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16882594 TGTGCATGCCAAAAAAAATACAAGGATCAAGTTTACCAAGTTTTGGGCCAAAA-TCCCTTCCAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC-AA
* *
16882658 AAAAGTTTAAAAAAT-CCGAAACCGTAAAAGGTTTCGAAAATCGTGAAAAATA-ACAAACGAGTC
452 AAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGA-AAACGAGTC
* * *
16882721 ATTTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
16882786 TGGCATTGGCATGCAGAAAGATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
16882851 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGTCCGTCCGCTTGTTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** *
16882916 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACTGAGGGTTGCGACAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * * * *
16882981 CGGCAGCACGCAG-AGGGGTACCCGACCGATCCTCGGCTTACGCAACTCGCCCCTCTAGCTGGCT
774 CGGCAGCACGCAGAAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16883045 GAGCGCTCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T-
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
16883102 --C-TA---AG---A-T--C-G-----GATC--A---GACCGAGGGTTGTGGTAGCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** ** *
16883144 GCTCGGGCATGTGCTGGTGCCGCATTTTTCCTT-GTCGGGGCACCATCGTCGGAGCATCGTCGTA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * * * *
16883208 GAACCTGACTGACGG-TTTAGGGTTCTGACAATCGGGGGGGCCGGGTGGGTGTGTGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATG
* *
16883272 TGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16883337 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAATGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16883402 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTCTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16883467 TGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
* * * *
16883532 AAATTTTAAAAAACCCCGAACCGTAAAAAGTTGTGAAAATCGTGAAAAATAAAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTT-TCAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
16883597 TTGCCATGAAACTTTGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
16883662 CATTGGCATGTAGAAATATGACGGTGTGCCTAAAACCAGCTATCACCCTATCGATCCACGGCTT-
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16883726 AG--TGCCCG-C-C-C--GCC--CGT--T----A-------GCCCGCTCGTTTCATCGGTTGGCT
647 CGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
16883769 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGTAGCAAGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * * *
16883834 GTAGCATGCAG-AGTGGGACCCGATCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
776 GCAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
16883898 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
16883956 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** **
16884021 GCTTGGGCATTTTCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
16884086 AACCTAACCGGCGGTATTGGGGTTCTGACGATC-----GG--GGGGGTTGTGCGCACATTATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
16884144 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAT
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16884209 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16884274 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** ** * ** * *
16884339 -G---GGC--CAAAACT-C---CTTC-CG---AGAAAATTT----TAAAAAATCCTGAACCATAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT--TCCA-AA
* * *** *** ** * **
16884386 AAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTC---ATCTTG--CCAT-G--AA--A-----
453 AAATTTTAAAAAATCCCGAACCGTA-AAAA-GTTTCAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16884436 ------------CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
16884489 GCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCATATCGATCCGCGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16884554 GCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG--C--CCGCCCGCTCGTTTCGTCGGTT
** * ** ** * **
16884619 GGCTTAGGCATACCTAGTTCATTCCTAGTCTAAGATCAGACCAAATTGAGGGTTGCGATAATAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
** * * * ** * * * *
16884684 ATCAACAGCACGTAGAGGGGGGCCCGGTCGATCACCGACTTGTGCATCCCGCCCCTCTGGTCGGC
772 ATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* ** * * *
16884749 TAAGCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATATGGAGCTCATTCCTAGTCTA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
16884810 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTAG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
16884875 ACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * *
16884940 AACCTGACCGACGACATTAGGGTT-CGAGCGAT--AGGGGGCTGGGGGGTGTGCGCATATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
16885002 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCT
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16885067 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16885132 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** **
16885197 GTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAAGTTTCTGGCCAAAACTCCTTCCAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* **
16885262 AATTTTAAAAAATCCTGAACCCCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
16885327 TTCCATGAAACTTAACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
16885392 AGTGGCATGTAAAAATATGAAGATGTGCCTAAACTCACCTACTACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16885457 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCTGCCCGCCTGCTCGTTTTGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACC--C-GCCCGCCCGCTCGTTTCGTCGGTTGG
* *** *
16885522 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATAAGACCAAGGGTTGCGGTAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * *
16885587 CGGCAGCACGCAG-AGGTGGACGCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTT
774 CGGCAGCACGCAGAAGG-GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16885651 GAGCGCCTGTACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCACTCCCAGTCTA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
16885711 AGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGTAGCACTTGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
16885776 GCTCGGGCATGTGCT-ATGGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGA
66 GCTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
* * * *
16885840 GAACCTGACTGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGCGGAAGTGCGCACTTGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GG-TGTGCGCACATGAT
* * *
16885904 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTGTCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16885969 CACCCCCCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
258 CA-CACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16886034 GAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * **
16886099 TGTTT-TGCATGGCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCATAA
386 T-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTC
* ** *
16886163 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAGAACGAGT
449 CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGT
* *
16886228 CGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16886293 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTGCCACCCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
16886358 CTTGCGCATGCTGTTTGTCTGGCCGACGTAATGCCCACCCGCCCGTCCGCCTGCTCGTTTCCTCG
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG--C-CC-GCTCGTTTCGTCG
* * ** ** * * **
16886423 ATTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGA-TTGACTGAGGGTTACGACAGC
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * * * * * * * *
16886487 AGGATCAGTAGCACACAGAGGGGGACTCGACCGATCCTCGACTTACGCATCCCACCCCTCTGGCC
769 AGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
16886552 GGCTAAGCGCCCGCACGCTCGTTTC---------C-TAGG--T--TGAG----TT---AG----
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* **
16886591 -GGATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGGCAGCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
16886655 GCTCGTGCATGTGTTGGTGCCACCTTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
16886720 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGTGGCCACGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
16886785 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16886850 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CAGTAGCCATTAAAGTGTCTGAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAA
16886913 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
16886978 T-TGCATGCCAACAAAAATAC-AGCGATCACGTCTACCAAGGTTGGGGCTAAAACTTTTTCCAAA
389 TGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
* ** * *
16887041 AAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGT
* * * *
16887106 CCTGCCATAAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
***
16887171 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16887236 GCGAATCCCGTCTGTCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCACTCGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG--C-CC-GCCCGCTCGTTTCGTCGGTT
* * * * * *
16887301 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * *
16887366 ATTGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
772 ATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
16887431 TGAGC-CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
16887491 AG-AT-C-G-G---A---CC-G-----GAT----------CGAGGGTTACGGCAGCACATGCTAG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
16887530 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAAATATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* ** *
16887595 AACCTGACCGGCGGTATTGGGGTTCCGACGATCAAGGTGGCCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
16887660 CGATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16887725 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
16887790 GGGGACGGTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16887855 TGCATGCCAACAAAAGTAC-AGCGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
391 TGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * ** ** * *
16887919 AATTTTGAAAAATCCAGAGCCACAAAAAGTTTCAAAATTTATGAAAAAAAGAAAACAAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGTCT
* * *
16887984 TGCCATAAAACTTCACGTGTAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16888049 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG--CCGAC-G--T-
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTG
* *
16888108 ---A----G------T-GCC--C--A---CTCACCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
16888152 AGGCATACAGAGTTGATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGAAAGATTGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGG
* ** ** * * *
16888217 TAGCACATAGAAGGGGACCTAACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGC
777 CAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
16888282 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
16888338 AGCATGCAGAGTTCATTCCCAGTCTAAGATCGGGCCGGACTGAGGGTTGCAGTAGAACATGCTAG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
*** * * ** * * * *
16888403 GCTCGGGCATGTGCTGGTGTTACAATTCTCTTCGTCAGGGCACCATCGCCGAAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * *
16888468 AACCTGACCGACGGCATTGGGGTTTCGGCGATCAGGGAGGCCGAGGGGGTATGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * * *
16888533 GTGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCGATAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16888598 CACCGCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16888663 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16888728 ATGCATACCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * *
16888793 AGTTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
16888858 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTCTATGAGTTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
16888923 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
16888988 AATCCCGTCTGTCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCACTCGTTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
16889053 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC
* * *
16889118 GGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
16889183 GC-CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** *
16889240 AG--TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTTG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
16889303 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGAGCACCATCGTCGGAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * *
16889368 AACCTGATCGGCGACATTGGGGTTCCGACGATCGAGGGGTCAGGAGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * **
16889433 CGATGGGTGCTGGTACTTGGCCCTTATACTGGCCTCCTATCCCTCATCAAACCTCGAGAACCCTT
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16889498 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16889563 GGGGACAC-TTTTTCAAATGGTC-CTAAAATCTTGTACACATCGAGTTTTTAGCTGACTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16889626 GTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* ** *
16889691 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
16889755 TGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTAGAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16889820 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCAGCTACCACCCTATCAATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
16889885 GCATCCCGTCTCTCTGG-C--C---G-G----CCCGCCCGCCCGTTTGTTTTGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * * * *
16889939 GTTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTGTGGTAGCAAGATCAGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * *
16890004 AACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGATG-
778 AGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GC
* * *
16890068 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
16890124 AG
1 AG
16890126 ATTGGACCGA
Statistics
Matches: 10040, Mismatches: 1163, Indels: 620
0.85 0.10 0.05
Matches are distributed among these distances:
828 107 0.01
829 1 0.00
830 4 0.00
831 2 0.00
832 1 0.00
833 1 0.00
835 3 0.00
837 3 0.00
839 1 0.00
845 1 0.00
846 135 0.01
847 60 0.01
848 3 0.00
849 1 0.00
850 10 0.00
851 176 0.02
852 15 0.00
853 6 0.00
854 334 0.03
855 7 0.00
856 8 0.00
857 9 0.00
858 2 0.00
859 204 0.02
860 5 0.00
862 1 0.00
863 7 0.00
864 10 0.00
865 6 0.00
866 7 0.00
867 1 0.00
868 2 0.00
869 4 0.00
870 203 0.02
871 9 0.00
872 64 0.01
873 718 0.07
874 409 0.04
875 587 0.06
876 433 0.04
877 107 0.01
878 29 0.00
879 217 0.02
880 11 0.00
881 4 0.00
882 2 0.00
883 133 0.01
884 61 0.01
885 9 0.00
886 1 0.00
887 7 0.00
889 365 0.04
890 314 0.03
891 122 0.01
892 3 0.00
893 5 0.00
894 3 0.00
895 16 0.00
896 150 0.01
897 363 0.04
898 1346 0.13
899 1681 0.17
900 222 0.02
901 471 0.05
902 108 0.01
903 138 0.01
904 75 0.01
905 114 0.01
906 400 0.04
907 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
Found at i:16881312 original size:26 final size:26
Alignment explanation
Indices: 16881282--16881334 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16881272 GTTGACTTAG
16881282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16881308 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16881334 G
1 G
16881335 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16882211 original size:26 final size:26
Alignment explanation
Indices: 16882181--16882233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16882171 GTTGACTTAG
16882181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16882207 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16882233 G
1 G
16882234 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16883961 original size:26 final size:26
Alignment explanation
Indices: 16883931--16883983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16883921 GTTGACTTAG
16883931 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
16883957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
16883983 G
1 G
16883984 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:16885715 original size:26 final size:26
Alignment explanation
Indices: 16885686--16885738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16885676 GTTAACTTAG
16885686 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
16885712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16885738 G
1 G
16885739 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16889271 original size:24 final size:24
Alignment explanation
Indices: 16889218--16889265 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
16889208 GACTTAGGCA
16889218 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16889242 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16889266 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (24 bp):
TACGGAGTTCATTCCCAGTCTAAG
Found at i:16890896 original size:26 final size:26
Alignment explanation
Indices: 16890866--16890918 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16890856 GTTGACTTAG
* *
16890866 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
**
16890892 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
16890918 G
1 G
16890919 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:16892239 original size:891 final size:888
Alignment explanation
Indices: 16890298--16897141 Score: 8725
Period size: 892 Copynumber: 7.7 Consensus size: 888
16890288 CCCCCTATCC
*
16890298 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16890363 TTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
16890428 CAAAAGTCCTTCTGAAAAAATTTTAAAGAATCCCGAACCGTAAAATGTTTCGAAAATCATGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* * *
16890493 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16890558 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACGTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
16890623 TATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCAGCTTAGTGCCTGTCCGCCCGCCCGCTC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
*
16890688 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGT
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGT
** ** * * * *
16890753 TATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTTGGTCGATCCCTGGCTTACGCATCCCGCC
455 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCC
* * ** * *
16890818 CCTTTGGCTGGATGAGCGCCCATACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
520 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * * ** * *
16890883 CTAGTCTAAGCATATGGAGCTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTCGCGGTAGCA
585 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTTGCGGCAGCA
* ** * * *
16890948 CACGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC-C-CCGTAGA
649 CATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCGCATCGGAGA
* * ** * *
16891011 ACCTGACCGGTGGCATTGGGGTTACG-CTGATCGGGGGGATCGGGTGGGTGTGCGCACATGATAT
714 ACCTGACCGGCGGCATTGGGGTTCCGAC-GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
16891075 GCGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
778 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCA
* *
16891140 CACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAG
842 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
16891187 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16891252 TTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
16891317 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTTGAAAATCATGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* * * *
16891382 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAACTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
16891447 ACAAGCCAT-AAAATGGCATTGGCACATAGAAGTATGAAGATGTGCCTAAGCCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * ** * *
16891511 TATTGATCCACGACTTGCGTAACCCGTCTCTCTGGATGACGTAGTGCCCGCCCGCCCACCTGACC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCC
* ** * * *
16891576 GCTCGTTTCATCGGTTGGCTTACTCATA-GTGAGTTCATTCCCAGTCTAAGATCAGACTGGATCA
387 GCTCGTTTCGTCGGTTGGCTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CG
* * *
16891640 AGGGTTACGGCAGCAGGATCGGTATCACGCAGAGGGGGACCCGATCGATCCCCAGG-TTGCACAT
450 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GGCTTGCACAT
* * * *
16891704 CCTGCCCCTCTGGCTGGCTGTGCGACCGCACGCTCGTTGCGTGGGTTGACTTAGGCATACGGAGT
514 CCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
16891769 TCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCA
579 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCAGACCGAGGGTTGCG
* **
16891834 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCTGGGGCACCATCGC-T
643 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCGCAT
* *
16891898 -GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACAT
708 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
*
16891961 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGA
773 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGA
16892026 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
837 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
16892078 CCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16892143 TTTTAGCTGAATTTTTTTATGCATACCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
16892208 CAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* * * * * *
16892273 ATAGAAAACAAGTCGTCTTGCCGTGAAACTTAATGTGAAGGCTTAAGGGACCATTCTATGAGTTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
16892338 ACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16892403 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATTGCCCGCCAGCCCTCCCGCCC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G----CCCGCCC
* * * *
16892468 GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTGGACTGGA
383 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * **
16892533 CTAAGGGTTGCGGCAGCAGCATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGT
448 C-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCAC
* * * * * *
16892598 ATCTCGCCCTTCTGG-TCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGA
512 ATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
16892662 AGTTCATTTCCAGTCTAAGCATGCGGAGTTCATTCCCAGTATAAGATCTAACCAGACCAAGGGTT
576 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTT
* * *
16892727 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCGCATTTTTCTTC-GTCGAGGCACCAT
640 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACT-GGGGCACCAT
* * * *
16892790 CGCCGGAGCATCGTCAGAGAACCTGATCGGTGGCATTGGTGTTTCGACGATCGGGGGGGCCGGAG
703 ---C---GCATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-G
* * * *
16892855 GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTAACCTT
758 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
*
16892920 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
822 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
16892985 AG
887 AG
* *
16892987 CAACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16893052 TTTTAGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCAACCAAGTTT-GGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
16893116 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTCAAAAATCGTGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* * *
16893181 ATAGAGAACGCGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
16893246 ACAAGGCATAAAAATTGCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
16893311 TATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGCCCGCTC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* * * *
16893376 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCAGACCGGATCGAGGCT
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGT
* * * * * *
16893441 TGCGGCAGCAGGATCGACAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCC
455 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCC
* * *
16893506 CCTCTGG-TCGGCTGAGCTCCCGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGAAGTTCATT
520 CCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
16893570 TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCGGACCGATGGTTGCGGCAAC
584 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TTGACCAGACCGAGGGTTGCGGCAGC
* * * *
16893635 ACATACT-GACTCAGGCATGTGCTGGTG-T-CACTTTTT-TCTC-CGTCGAGGCACCATCGTCGG
648 ACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA-TTTTTCT-TCAC-T-GGGGCACCA---TC--
* * * * ** **
16893695 AGCATCACCGCAGAATCGGACCGGCAGCATTGGGGTTCCGGTGATCGAAGGGGCCGGGGGGGTGT
704 -GCAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
16893760 GCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCACCTATCCCTCATCAAA
765 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAA
* * * *
16893824 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTACCAGTAG
829 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
16893884 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
16893949 TTTTAG-TAGAATGTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTTGGG
66 TTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
16894013 CCAAAACTCCTTTCGAAAAAATTTCAAAAAATCCCGAACCGC----A------AAAATCATGAAA
130 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAA
*
16894068 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * ** *
16894133 TCCAAGCAATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACC
260 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
16894198 CTATCGATCCACGGCTTGCGCA-CCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
325 CTATCGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-
* * *
16894262 CTGCTAGTTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACAGGACT
388 CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-
* * * *
16894327 GAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGG-CTC-AGTCGATCCCCGGCTTGCACA
449 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCACA
* ** *
16894390 TCCCGCCCCTCTGGCTGGCTGAACGCTTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
513 TCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
16894455 TTCATTCCCAGTCTAAG-AT-C--AG---------A--CT-GGATT-----G---G-GGGTTGCG
578 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAGACCGAGGGTTGCG
** * * *
16894495 GTGGCACGTGCTGGGCTCGGG-ACTGTGCTGGTGCTGCATTTTTGTTCACCGGGGCACCATCGTC
643 GCAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCG-C
* *
16894559 GGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGT
706 -----AT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* *
16894623 GTGCTCACGA-GATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
763 GTGCGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
* **
16894687 AAA-CTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATGCTACAGGTTTGCTGCCAGTAG
826 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
16894749 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
16894814 TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT--CGTCTACCAAGTTCAGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
16894877 CAAAACTCCATCCGAAAAAATTTTAAGAAATCCCGAACCG-AAAAAGTTTCGAAAATCATGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* *
16894941 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
16895006 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTGCCACCC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** *
16895071 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTT
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* * *
16895136 GTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGT
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGT
* * * * *
16895201 TGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCAAATCCCGCC
455 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCC
** * *
16895266 CCTCTGGCCAGCTGAGCGCCCAGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATT
520 CCTCTGGCTGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
16895331 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTTAG-AGCAG
584 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTT-GCGGCAG
* *
16895395 CACATGCTGGGCTTGGGCATATGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGC
647 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT--------CA-C-T-G--GG-GC
* * * *
16895460 ATCATCGGAGCATCGCCAGAGAACCTGATCGGCGGCATTGGGGTTTCGACGATCGGGGAGGCCGG
698 ACCATC---GCATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
16895525 GGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCC
757 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* *
16895590 TAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
821 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
16895655 TAG
886 TAG
* *
16895658 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
16895723 TTTTGGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*** * * *
16895788 CAAAAATCCTTGTAAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTTGAAAATCATGAAAA
131 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* *
16895853 ATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
16895918 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTAACTACCACCC
261 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16895983 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCC
326 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCC
* * *
16896048 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCGGACAGA
387 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GA
* * * * * * *
16896113 GGGTTCCAGCAACAGGATCGGCAGCACGCAGAGGGGCACCCAACCGATCCCCGGCTTGCACATCT
451 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCC
** * * * *
16896178 CGCCCCTCTGGCCAGCTGAACGCTCGCACGGTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTC
516 CGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
16896243 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCAAGGGTTGTGAC
581 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTTGCGGC
* * * * * *
16896308 AGCACTTGCTAGGCTTGGGCATGTGGTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAA
645 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCA---TC---
* * * * * *
16896373 GCATCGCCGGAGAACTTGACCGGTGGCATTGAGGTTCTGGCGATC-GAGGGGCCGGGGGGGTGTG
704 GCAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* *
16896437 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCTCTCATCAAAC
766 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAAC
16896502 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
830 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
16896561 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
16896626 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT-GGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
16896690 CTAAAAATCCTACC-AAAAAATTTTTAAAAAATCCCAAACCGCAAAATGTTTTAAAAATCGTGAA
131 C-AAAAATCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAA
* *
16896754 AAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAAT
194 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
16896819 TTACTAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
259 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
16896884 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGC
324 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
* * * * **
16896949 TTGTTTCATTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAACCGGACCGAGG
389 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGG
** * * * * * * * * *
16897014 GTTGCGGTGGCAAGATTGGCAGCACGCAGAAGGGGACCCAACCAATCCTCGGCTTGCGCATCCAG
453 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCG
* ** * *
16897079 CTCCTCTGGCCAGCTGAGCCCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTC
518 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16897142 TGGGCCAAAA
Statistics
Matches: 5217, Mismatches: 574, Indels: 318
0.85 0.09 0.05
Matches are distributed among these distances:
860 1 0.00
861 1 0.00
863 54 0.01
865 208 0.04
866 99 0.02
867 10 0.00
868 92 0.02
869 44 0.01
870 52 0.01
871 4 0.00
872 188 0.04
873 3 0.00
874 4 0.00
875 2 0.00
876 2 0.00
878 1 0.00
883 1 0.00
885 2 0.00
886 4 0.00
887 5 0.00
888 275 0.05
889 251 0.05
890 5 0.00
891 460 0.09
892 482 0.09
893 5 0.00
894 1 0.00
895 9 0.00
896 315 0.06
897 207 0.04
898 88 0.02
899 251 0.05
900 249 0.05
901 7 0.00
902 18 0.00
903 465 0.09
904 44 0.01
905 3 0.00
906 2 0.00
907 88 0.02
908 289 0.06
909 399 0.08
910 9 0.00
911 49 0.01
912 188 0.04
913 1 0.00
914 1 0.00
915 133 0.03
916 146 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCC
CTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGACCAGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCGCATCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
Found at i:16893591 original size:26 final size:26
Alignment explanation
Indices: 16893554--16893606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16893544 GTTGACTTAG
*
16893554 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16893580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16893606 G
1 G
16893607 ATTTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16895345 original size:26 final size:26
Alignment explanation
Indices: 16895315--16895365 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895305 GTTGACATAG
16895315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16895341 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16895366 GGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16896259 original size:26 final size:26
Alignment explanation
Indices: 16896230--16896282 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16896220 GTTGACTTAG
16896230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16896256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16896282 G
1 G
16896283 ATCTGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16896672 original size:903 final size:895
Alignment explanation
Indices: 16890298--16897141 Score: 8378
Period size: 903 Copynumber: 7.6 Consensus size: 895
16890288 CCCCCTATCC
*
16890298 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16890363 TTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* ** * * *
16890428 CAAAAGTCCTTCTGAAAAAATTTTAAAGAATCCCGAACCGTAAAATGTTTCGAAAATCATGAAAA
130 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAA
* * *
16890493 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
16890558 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACGTACCACCC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
16890623 TATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCAGCTTAGTGCCTGTCCGCCCGCCCGCTC
324 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT
* * * *
16890688 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGT
389 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
** * ***** * *
16890753 TATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTTGGTCGATCC-CTGGCTTACGCATCCCGC
454 TGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCCAACCGATCCTC-GGCTTGCACAT-CCGC
* ** * ** * *
16890817 CCCTTTGGCTGGATGAGCGCCCATACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
516 CCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * ** ** * * **
16890882 CCTAGTCTAAGCATATGGAGCTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTCGCGGTAGC
581 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGACAGC
* * **
16890947 ACACGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---T-----C-
646 ACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCA
* * * *
16891003 -C-CCGTAGAACCTGACCGGTGGCATTGGGGTTAC-G-CTGATCGGGGGGATCGGGTGGGTGTGC
711 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CTGAC-GATCGGGGGG-CCGGGGGGGTGTGC
* * * *
16891064 GCACATGATATGCGATTGGTGCTAGTACTTGGCCCTTATATTGGC-CCTCTATCCCTCATCAAAC
773 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCC-CTATCCCTCATCAAAC
* * *
16891128 CTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAG
837 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
16891187 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16891252 TTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* * *
16891317 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTTGAAAATCATGAAAA
130 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAA
* * * *
16891382 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAACTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*** * *
16891447 ACAAGCCAT-AAAATGGCATTGGCACATAGAAGTATGAAGATGTGCCTAAGCCCACCTACCACCC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * ** * *
16891511 TATTGATCCACGACTTGCGTAACCCGTCTCTCTGGATGACGTAGTGCCCGCCCGCCCACCTGACC
324 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCC
* ** * *
16891576 GCTCGTTTCATCGGTTGGCTTACTCATA-GTGAGTTCATTCCCAGTCTAAGATC-AGACTGGATC
385 GCTTGTTTCATCGGTTGGCTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACC
* * * * * * * *
16891639 AAGGGTTACGGCAGCAGGATCGGTATCACGCAGAGGGGGACCCGATCGATCCCCAGG-TTGCACA
448 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCCAACCGATCCTC-GGCTTGCACA
** * * *
16891703 TCCTGCCCCTCTGGCTGGCTGTGCGACCGCACGCTCGTTGCGTGGGTTGACTTAGGCATACGGAG
511 TCC-GCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * ** * *
16891768 TTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGC
575 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-
* ** *
16891833 A-ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCTGGGGCACCA---T
639 AGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGT
* * *
16891894 C---GC-T----GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGG
704 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGG
*
16891950 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CTCCTATCCCTCAT
768 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTC-CCTATCCCTCAT
*
16892014 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
832 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
16892078 CCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16892143 TTTTAGCTGAATTTTTTTATGCATACCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* * * **
16892208 CAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
130 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAA
* * * * * *
16892273 ATAGAAAACAAGTCGTCTTGCCGTGAAACTTAATGTGAAGGCTTAAGGGACCATTCTATGAGTTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16892338 ACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
16892403 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATTGCCCGCCAGCCCTCCCGCCC
324 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G----CCCGCCC
* * * * * * *
16892468 GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTGGACTGGA
381 GCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA
** * * * * * * * **
16892533 CTAAGGGTTGCGGCAGCAGCATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGT
446 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCCAACCGATCCTCGGCTTGCAC
* * * * * * *
16892598 ATCTCGCCCTTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGAA
510 ATC-CGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
16892663 GTTCATTTCCAGTCTAAGCATGCGGAGTTCATTCCCAGTATAAGATCTA-ACCAGACCAAGGGTT
574 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTT
* ** * ** *
16892727 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCGCATTTTTCTTCGTCGAGGCACCATC
638 GAGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCT-GCATTTTTCTTCACCGGGGCACCATC
* * * * * *
16892791 GCCGGAGCATCGTCAGAGAACCTGATCGGTGGCATTGGTGTT-TCGACGATCGGGGGGGCCGGAG
702 GTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATC-GGGGGGCCGG-G
* * * * * *
16892855 GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTAACCTT
764 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
*
16892920 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
829 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
16892985 AG
894 AG
* *
16892987 CAACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16893052 TTTTAGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCAACCAAGTTTGGGCC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
* * * ** *
16893117 AAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTCAAAAATCGTGAAAAA
131 AAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAAA
* * *
16893182 TAGAGAACGCGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
195 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
16893247 CAAGGCATAAAAATTGCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCT
260 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
16893312 ATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGCCCGCTCG
325 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTG
* * * * *
16893377 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATC-AGACCGGATCGAGGCT
390 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGT
* * * * * * * *
16893441 TGCGGCAGCAGGATCGACAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCC
454 TGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCCAACCGATCCTCGGCTTGCACAT-CCGCC
* * * * * *
16893506 CCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGAAGTTCATTT
517 CCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
** * * * * *
16893571 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCGGACCGATGGTTGCGGCAACA
582 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGACAGCA
* * ** * *
16893636 CATACT-GACTCAGGCATGTGCTGGTG-T-CACTTTT-TTCTCCGTCGAGGCACCATCGTCGGAG
647 CATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCG--G-GGCACCATCGTCGGAG
* * * * * * ** *
16893697 CATCACCGCAGAATCGGACCGGCAGCATTGGGGTTCCGGTGATCGAAGGGGCCGGGGGGGTGTGC
709 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCG-GGGGGCCGGGGGGGTGTGC
*
16893762 GCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGC-CACCTATCCCTCATCAAAC
773 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTC-CCTATCCCTCATCAAAC
* * * *
16893825 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTACCAGTAG
837 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
16893884 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16893949 TTTTAG-TAGAATGTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTTGGG
66 TTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGG
* * * * *
16894013 CCAAAACTCCTTTCGAAAAAATTTCAAAAAATCCCGAACCG---CA------AAAATCATGAAAA
129 CCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTGAAAATCATGAAAA
*
16894069 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *** *
16894134 CCAAGCAATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
16894199 TATCGATCCACGGCTTGCGCA-CCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
324 TATCGATCCACGACTTGCGCATCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C
* * * * * *
16894263 TGCTAGTTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACAGGACTG
387 T--T-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCG
* * * * * * ** *
16894328 AGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGGCTCAGTCGATCCCCGGCTTGCACATCC
449 AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGACCCAACCGATCCTCGGCTTGCACAT-C
** * ** *
16894393 CGCCCCTCTGGCTGGCTGAACGCTTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
513 CGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * **
16894458 ATTCCCAGTCTAAG-AT-C--AG---------A--CT--G----GAT-TG---G-GGGTTGCGGT
578 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGAC
* * * *
16894497 GGCACGTGCTGGGCTCGGG-ACTGTGCTGGTGCTGCATTTTTGTTCACCGGGGCACCATCGTCGG
643 AGCACATGCTGGGCTTGGGCA-TGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGG
* * * * *
16894561 AGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGT
707 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGT
* * *
16894625 GCTCACGA-GATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
771 GCACAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAA
* **
16894689 A-CTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATGCTACAGGTTTGCTGCCAGTAG
835 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
16894749 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16894814 TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT--CGTCTACCAAGTTCAGGGC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGC
* * * * *
16894877 CAAAACTCCATCCGAAAAAATTTTAAGAAATCCCGAACCGAAAAAGTTTCGAAAATCATGAAAAA
130 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTGAAAATCATGAAAAA
* *
16894942 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTA
195 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
16895007 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTGCCACCCT
260 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
**
16895072 ATCGATCCAC-AGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTT
325 ATCGATCCACGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT
* * *
16895136 GTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGT
389 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
* * * * *
16895201 TGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCAAATCCCGCC
454 TGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCCAACCGATCCTCGGCTTGCACAT-CCGCC
* *
16895266 CCTCTGGCCAGCTGAGCGCCCAGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATT
517 CCTCTGGCCAGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
16895331 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCGAGGGTT-AGAGCAG
581 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGA-CAG
*
16895395 CACATGCTGGGCTTGGGCATATGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGC
645 CACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCAT---C---G-
* *
16895460 ATCATCGGAGCATCGCCAGAGAACCTGATCGGCGGCATTGGGGTT-TCGACGATCGGGGAGGCCG
703 ----TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATCGGGG-GGCCG
*
16895524 GGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGG-TCCCCTATC
762 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCT-CCCTATC
* *
16895588 CCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
826 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
16895653 AGTAG
891 AGTAG
* *
16895658 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16895723 TTTTGGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-C
** *
16895788 CAAAAATCCTTGTAAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTTGAAAATCATGAAAA
130 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAA
* *
16895853 ATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16895918 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTAACTACCACCC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
16895983 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCC
324 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCC
* * * * * *
16896048 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCGGACAGA
385 GCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGA
* * * * *
16896113 GGGTTCCAGCAACAGGATCGGCAGCACGCAGAGGGGCACCCAACCGATCCCCGGCTTGCACATCT
450 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG-ACCCAACCGATCCTCGGCTTGCACATC-
* * * *
16896178 CGCCCCTCTGGCCAGCTGAACGCTCGCACGGTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTC
513 CGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
16896243 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCAAGGGTTGTGAC
578 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGAC
* * * * *
16896308 AGCACTTGCTAGGCTTGGGCATGTGGTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAA
643 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGA
* * * * *
16896373 GCATCGCCGGAGAACTTGACCGGTGGCATTGAGGTTCTGGCGATCGAGGGGCCGGGGGGGTGTGC
708 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGC
* * *
16896438 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCTCTCATCAAACC
773 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACC
16896503 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
838 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
16896561 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
1 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
16896626 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGCC
66 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
* * * * * *
16896691 TAAAAATCCTACCAAAAAATTTTTAAAAAATCCCAAACCGCAAAATGTTTTAAAAATCGTGAAAA
131 -AAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTGAAAATCATGAAAA
* *
16896756 ATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTT
194 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16896821 ACTAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
259 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
16896886 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTT
324 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT
* * *
16896951 GTTTCATTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAACCGGACCGAGGGT
389 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
* * * * * *
16897016 TGCGGTGGCAAGATTGGCAGCACGCAGAAGGGGACCCAACCAATCCTCGGCTTGCGCATCCAGCT
454 TGCGGTAGCAGGATCGGCAGCACGCAG-AGGGGACCCAACCGATCCTCGGCTTGCACATCC-GCC
* *
16897081 CCTCTGGCCAGCTGAGCCCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTC
517 CCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16897142 TGGGCCAAAA
Statistics
Matches: 5217, Mismatches: 588, Indels: 290
0.86 0.10 0.05
Matches are distributed among these distances:
862 2 0.00
863 50 0.01
865 208 0.04
866 107 0.02
867 4 0.00
868 90 0.02
869 54 0.01
870 53 0.01
871 4 0.00
872 187 0.04
873 3 0.00
874 3 0.00
876 2 0.00
878 1 0.00
883 1 0.00
885 2 0.00
887 6 0.00
888 275 0.05
889 251 0.05
890 3 0.00
891 469 0.09
892 462 0.09
893 10 0.00
894 2 0.00
895 7 0.00
896 330 0.06
897 207 0.04
898 85 0.02
899 248 0.05
900 251 0.05
901 1 0.00
902 5 0.00
903 472 0.09
904 46 0.01
905 3 0.00
906 5 0.00
907 86 0.02
908 288 0.06
909 399 0.08
910 4 0.00
911 47 0.01
912 188 0.04
913 1 0.00
915 151 0.03
916 144 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
AAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTGAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGT
TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
CGGTAGCAGGATCGGCAGCACGCAGAGGGGACCCAACCGATCCTCGGCTTGCACATCCGCCCCTC
TGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGACAGCACATG
CTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCACACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
Found at i:16898352 original size:26 final size:26
Alignment explanation
Indices: 16898316--16898368 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16898306 GTTGGCTTAG
16898316 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16898342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16898368 G
1 G
16898369 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16900151 original size:26 final size:26
Alignment explanation
Indices: 16900122--16900174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900112 GTTGACTTAG
*
16900122 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16900148 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16900174 G
1 G
16900175 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16900562 original size:903 final size:902
Alignment explanation
Indices: 16898239--16903352 Score: 5513
Period size: 903 Copynumber: 5.7 Consensus size: 902
16898229 ACCACCCTAT
* * * * *
16898239 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTG-GTGCCCGCTCGCCTGCTTGTTTCG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACG-CT-C--GTTTCG
* * * *
16898303 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
61 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * * * *
16898368 GATCGGACCAGACCGAAGGTTGCGACAGCACATGCTGGGCTCGGGCATG-TGCTGGTGTCGCATT
126 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTTGCTGGTGCCGCATT
* * * *
16898432 TTTTTTCATCGGGGCACCATCACCGAAGCGTCACCGGAGAACCTGACCAGCGGCATTGAGGTTCC
191 TTTCTTCATCGGGGCACCATCACCGAAGCATCACC-GAGAACCTGACCGGCGGCATTGGGGTTCC
* * * * * *
16898497 GGAGATTGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
255 -GACAATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
* * *
16898562 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCG-CGCCTCCTTACAGAGCATTTGAGAT
318 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-GACACCCCCTTAAAGAGCATTTGAGAT
* * *
16898626 TTTACAGGTTTG-TCGCCAGTAGCAATTATAGTGTCTGAAATGGGGACACATTTTTCAAATGGTC
382 TTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * ** *
16898690 ACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGCACATGCCAA-AAACAATTCAAG
446 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAG
* * * * ** *
16898754 GATCACGTCTACCAACTTTGGGGCTAAAAATTCTTCCGAAAAAATTTTAAAAAATCTTGAACCGC
510 GATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCAC
* *
16898819 AAAAAGTTTTAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
575 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
16898884 CTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAATA
640 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * *
16898949 TGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGAATCCCGTCTCTCTGGCCGGCA
705 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * *
16899014 TAGTGCCAGCCCGCCCACCCGCCCGCTTGTTGCATCGGTTGGCTTAGGCATACGAAGTTGATTCC
770 TAGTGCCCGCCCGCCCACCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * **
16899079 CAGTCTAAGA-TAGGATCAAACTGAGGGTTGGGGCAGCAGGATCGGCAAAACGCAGA-GGGGACC
835 CAGTCTAAGATTA-GACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
16899142 CGAC
899 CGAC
* * * * * *
16899146 CAATCCCCGGCATGCGCATCCTGCCCCTCAGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
16899211 TGACTTAGCCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
* * * * ** * *
16899276 GACCAGACCAAGGGTTACGGTAGCATGTGCTGGGCTCGGGCATG-TGCTGGTGCCGTATTTTTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTTGCTGGTGCCGCATTTTTCT
* * * * * * *
16899340 TCA-CTGGGGCACCATCACCGGAGCATCGTCGGAGAACTTGACCGTCGTCATTGGGGTTCCGACG
196 TCATC-GGGGCACCATCACCGAAGCATC-ACCGAGAACCTGACCGGCGGCATTGGGGTTCCGACA
** * * *
16899404 ATCGGGGGGGCCGGGGGGTGCACGCACATGATGTGAGATGGGTGCTAGTAGTTGGCCCTTACATT
259 ATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
* * * * *
16899469 GGCCCCCTATCCCTCATCAAATCTCGAGAAGTTACACCCTCTTAAAGAGCGTTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
16899534 GGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
16899599 CTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * *
16899664 CTACCCAGTTTTGGGCCAAAACTTCTTCCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTT
*
16899729 TCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16899794 ACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGGCTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * * *
16899859 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTTTCTGGCCAGCTTAGTGCCC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * **
16899924 GCCCGTCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTG
778 GCCCGCCCACCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
16899989 GATTAGACCGAACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGATACCCGAT
843 GATTAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
** * * * *
16900049 CGATCCCCCACTTACGCATCTCTCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
16900114 TGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
* * *
16900179 GACTGGACCGAGGGTTGCAGCAGCACATTCTGGGCTCGGGCAAGTTGCTGGTGCCGCATTTTTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTTGCTGGTGCCGCATTTTTCT
* * * *
16900244 TCATCGGGGCACCATCACCGAAGCATCGCCAGAGAACCTAACCGACGGCATTGGGGTTCCGGCAA
196 TCATCGGGGCACCATCACCGAAGCATCACC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACAA
* * *
16900309 T-GGGAGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTAGTACTTGTCCCTTATATTG
260 TCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
* * *
16900373 GCACCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATGTTATAG
324 GCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16900438 GTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
16900503 TTGTACATTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * *
16900568 TACCCAGTTTTGGGCCAAAACTTCTTCCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
*
16900633 CAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
16900698 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* *
16900763 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGT----G
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
16900824 CCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACAGAGTTCATTCCCAGTGTAAG
779 CCCGCCCACCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * ** * * *
16900885 ATCAGACCGGA-TAGAGGGTTGTGACAATAGGATCAACAGCATGCAAAGGGGGACCCGAC
844 ATTAGACCGAACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* ** * * * ** * *
16900944 TGATCTTCGG-TTGCGCATCACACCCCTTTACCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * ** ** * *
16901008 TGACTT-----T-C-GAGTCTAAGATCGGA-TCGGATCA-A-GG-GTTGCGA----CAG-CACAA
66 TGACTTAGGCATACGGAGT-TCA-TTCCCAGTCTAAGCATATGGAGTT-C-ATTCCCAGTC-TAA
* * * * * * ** * *** ***
16901057 GCT-GGGCTCAGG--C-ATGTGCTG-GTGCCGTATTTTTCTTCAC-CGGGGCACCAT-C--GT--
126 GATCGGAC-C-GGACCGA-GGGTTGCG-GCAGCA-CATGCTGGGCTC-GGGCAAGTTGCTGGTGC
* * * * * * * * ** * ** * * *
16901111 CGGA----GCATCGTCGGAGAACC-TGACCGACGGCAT--TGGGGTTCCGACGATCGGGGGGGTC
185 CGCATTTTTCTTCATCGGGGCACCATCACCGA-AGCATCACCGAGAACC--TGA-C-CGGCGG-C
** * ** * ** * * ** ** **
16901169 AGGGCGGTGGTGTGCG-CACAT-GATGTG-CGATGGCTGCTG-GTAC-T--TG-GCCCT-TATAT
244 A--TTGG-GGT-TCCGACA-ATCGGGGGGCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGC
* ** * ** * * * * * ** *
16901225 TGGCCCCCTATCCCTCATCAAACCTTGAGACCTCAC-A-CCC-CCTTAAA----GGGCATTTGAG
303 TAG-TACTTGGCCCT--T-ATA--TTG-G-CC-CCCTATCCCTCATCAAACCTCGAG-AACTGAC
16901283 A-----T-----------------TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
358 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16901326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTT
423 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTT
* * *
16901391 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCTG-A
486 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTC-TTCCGAA
* * * **
16901454 AAAATTTTAAAAAATCCCGAGCCATAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGT
550 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
16901519 CTTGCCATGAAAATTCATGTGAAGGCTTAAGGGACTATTGTATGAATTTAGAAGCCATAAAAATG
615 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16901584 GCACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTAAT-GATCCACAGCT
680 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCT
** ** *
16901648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTTGCTAGCCCGCCCGCCCGCTCGTTCCGTCGGT
744 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTCCGTCGGT
* * * * *
16901713 TGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATTAGACCCAACCGAGGGTTGTGGCCGCAG
809 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCGGCAGCAG
* *
16901778 GATTGACAGCACGCAGAGGGGGACCTGAC
874 GATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * *
16901807 CGAACCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGAGCGCCAGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
16901872 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTTGGAGTTCATTCCCAGTCTAAGAGCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
* * *
16901937 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC-ATTTGCTGGTGCCACATTTTTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTTGCTGGTGCCGCATTTTTCT
** *** * * * * *
16902001 TCGCCGGGGCACCATTGTCGGACCATTATCGAAGAACCTGACCGGCGACATTGGGGTTCCGACAA
196 TCATCGGGGCACCATCACCGAAGCATCACCG-AGAACCTGACCGGCGGCATTGGGGTTCCGACAA
* * * *
16902066 TCGGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGG
260 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
* * * * * * *
16902131 CCCCCTATCCCTCACCGAATCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTATAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
16902196 TTTACCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16902261 TGTACACTTCGAGTTTTTAGCTGAATTATTTTGTCCATGCCAAAAAAAATACAAGGAACATGTCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * *
16902326 ACCAAGTTTGGGGACAAAA-TACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
520 ACCAAGTTTGGGGCCAAAACT-TCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
** * * * *
16902390 TGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
16902455 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
*
16902520 ACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-
* *
16902585 CCAGCCCGCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCTA-T
776 CC-GCCCGCCCACCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGT
* * * * * *
16902649 CTAAGATCAGACC-AGACCGAGGGTTACGGCCGCAGGATCGACAGCACGTAGAGGGGGACCCGAT
839 CTAAGATTAGACCGA-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
*
16902713 CGATCCCCGGCTTGCG-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACATCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGG
* * *
16902777 TTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
** * * * *
16902842 GGATAGGAACGAGGGTTGTGGCAACACATGCTGGGGTCGGGC-A-TATGCTGGTGCCGCATTTTT
130 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGT-TGCTGGTGCCGCATTTTT
* * * ** * * *
16902905 ATCCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCGA-TGGGATTCCGG
194 CTTCATCGGGGCACCATCACCGAAGCATCACCG-AGAACCTGACCGGCGGC-ATTGGGGTTCCGA
* * * **
16902969 CGATCGGGGGGCCGAGGGGGTGTGCACGCATGATGTGCGATGGGCACTAGTACTTGGCCCTTATA
257 CAATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
* * *
16903034 TTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
16903099 TAGGTTTGCTGCTAGTAGCCA-CAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16903163 ATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
451 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
*** * * * *
16903228 GTCTACCAAGTTTGTTCCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
516 GTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAG
* * * *
16903293 TTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAAGTAAAGGC
581 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
16903353 ATACAGAGTT
Statistics
Matches: 3514, Mismatches: 544, Indels: 299
0.81 0.12 0.07
Matches are distributed among these distances:
854 92 0.03
855 207 0.06
856 61 0.02
859 3 0.00
863 102 0.03
864 50 0.01
869 4 0.00
870 8 0.00
871 10 0.00
872 3 0.00
873 13 0.00
874 29 0.01
875 24 0.01
876 25 0.01
877 16 0.00
878 28 0.01
879 30 0.01
880 15 0.00
881 11 0.00
882 23 0.01
883 41 0.01
884 11 0.00
885 5 0.00
886 7 0.00
887 6 0.00
888 8 0.00
889 4 0.00
894 52 0.01
895 100 0.03
899 5 0.00
901 58 0.02
902 757 0.22
903 909 0.26
904 74 0.02
905 34 0.01
906 528 0.15
907 161 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTTGCTGGTGCCGCATTTTTCT
TCATCGGGGCACCATCACCGAAGCATCACCGAGAACCTGACCGGCGGCATTGGGGTTCCGACAAT
CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
CCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCACCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
TAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
Found at i:16902822 original size:26 final size:26
Alignment explanation
Indices: 16902786--16902838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16902776 GTTGACTTAG
* *
16902786 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16902812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16902838 G
1 G
16902839 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16902942 original size:906 final size:902
Alignment explanation
Indices: 16901017--16903352 Score: 3378
Period size: 906 Copynumber: 2.6 Consensus size: 902
16901007 TTGACTTTCG
* * * * * *
16901017 AGTCTAAGATCGGATCGGATCAAGGGTTGCGACAGCACAAGCTGGGCTCAGGCATGTGCTGGTGC
1 AGTCTAAGATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGC
* * * * *
16901082 CGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
66 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGGCATTGG
** * *
16901147 GGTTCCGACGATCGGGGGGGTCAGGGCGGTGGTGTGCGCACATGATGTGCGATGGCTGCTGGTAC
131 GGTTCCGACGATC--GGGGG-CCCGG-GG-GGTGTGTGCACATGATGTGCGATGGGTGCTGGTAC
** * *
16901212 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCACACCCCCTTAAAGGGCA
191 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
16901277 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
256 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
16901342 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTTTATGCATGCCAACAAA
321 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTTTGTGCATGCCAACAAA
* * *
16901407 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCTG-AAAAATTTTAAAAAATC
384 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTTCCGAAAAAATTTTAAAAAATC
* ** * *
16901470 CCGAGCCATAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTC
448 CCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16901535 ATGTGAAGGCTTAAGGGACTATTGTATGAATTTAGAAGCCATAAAAATGGCACTGGCACGTAGAA
513 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACATAGAA
* *
16901600 ATATGAAGATGTGCCTAAACCCACTTACCACCCTAATGATCCACAGCTTGCGCATCCCGTCTCTC
578 ATATGAAGATGTGCCTAAACCCACCTACCACCATAATGATCCACAGCTTGCGCATCCCGTCTCTC
** * *
16901665 TGGCCGGCGTAGTGCTTGCTAGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCTTAGGCATACGGA
643 TGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGA
* * ** *
16901730 GTTCATTGCCAGTCTAAGATTAGACCCAACCGAGGGTTGTGGCCGCAGGATTGACAGCACGCAGA
708 GTTCATTCCCAGTCTAAGATCAGACCCAACCGAGGGTTACGGCCGCAGGATCGACAGCACGCAGA
* * * *
16901795 GGGGGACCTGACCGAACCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGAGCGCCAGCACGCT
773 GGGGGACCCGACCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCT
**
16901860 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTTGGAGTTCATTCCC
838 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
16901925 AGTCTAAGAGCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATTTGCTGGTGC
1 AGTCTAAGATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGC
* * * * *
16901990 CACATTTTTCTTCGCCGGGGCACCATTGTCGGACCATTATCGAAGAACCTGACCGGCGACATTGG
66 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGGCATTGG
*
16902055 GGTTCCGACAATCGGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
131 GGTTCCGACGATCGGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
16902120 CTTTATATTGGCCCCCTATCCCTCACCGAATCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGA
196 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
16902185 GATTTTATAGGTTTACCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
261 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
16902250 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTCCATGCCAAAAAAAATACAA
326 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
16902315 GGAACATGTCTACCAAGTTTGGGGACAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
391 GGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
16902380 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAG
456 CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAG
* *
16902445 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAG
521 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAG
*
16902510 ATGTGCCTAAACCCACCTACCACCAT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
586 ATGTGCCTAAACCCACCTACCACCATAAT-GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGG
16902574 CGTAGTGCCCGCCAGCCCGCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTT
650 CGTAGTGCCCGCCA----GCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTT
*
16902639 CATTCCCTA-TCTAAGATCAGA-CCAGACCGAGGGTTACGGCCGCAGGATCGACAGCACGTAGAG
711 CATTCCC-AGTCTAAGATCAGACCCA-ACCGAGGGTTACGGCCGCAGGATCGACAGCACGCAGAG
* * * *
16902702 GGGGACCCGATCGATCCCCGGCTTGCG-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACATCT
774 GGGGACCCGACCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCAC-GCT
* * *
16902766 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCC
838 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
16902831 AGTCTAAGATCGGATAGGAACGAGGGTTGTGGCAACACATGCTGGGGTCGGGCATATGCTGGTGC
1 AGTCTAAGATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGC
* * * *
16902896 CGCATTTTTATCCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCGA-TG
66 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGGC-ATTG
* * * * ** *
16902960 GGATTCCGGCGATCGGGGGGCCGAGGGG-GTGTGCACGCATGATGTGCGATGGGCACTAGTACTT
130 GGGTTCCGACGATCGGGGGCCCGGGGGGTGTGTGCA--CATGATGTGCGATGGGTGCTGGTACTT
*
16903024 GGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
193 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * *
16903089 TGAGATTTTATAGGTTTGCTGCTAGTAGCCA-CAAAGTGTCTGAAATGAGGACACTTTTTTCAAA
258 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
16903153 TGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
323 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*** *
16903218 CAAGGATCATGTCTACCAAGTTTGTTCCCAAAA-ATCCTTTCGAAAAAATTTTAAAAAATCCCGA
388 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAATA-CCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
16903282 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAAGT
452 ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGT
*
16903347 AAAGGC
517 GAAGGC
16903353 ATACAGAGTT
Statistics
Matches: 1273, Mismatches: 141, Indels: 30
0.88 0.10 0.02
Matches are distributed among these distances:
900 1 0.00
901 59 0.05
902 211 0.17
903 190 0.15
904 2 0.00
905 44 0.03
906 530 0.42
907 113 0.09
908 123 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (902 bp):
AGTCTAAGATCGGATCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGC
CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGGCATTGG
GGTTCCGACGATCGGGGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCATGTCTACCAAGTTTGGGGCCAAAATACCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCATAATGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCCAACCGAGGGTTACGGCCGCAGGATCGACAGCACGCAGAGGGGGACC
CGACCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
Found at i:16903856 original size:567 final size:565
Alignment explanation
Indices: 16902784--16903919 Score: 1729
Period size: 567 Copynumber: 2.0 Consensus size: 565
16902774 GGGTTGACTT
** * * *
16902784 AGGCATATGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGG
1 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATCGGATAGG
* * *
16902849 AACGAGGGTTGTGGCAACACATGCTGGGGTCGGGCATATGCTGGTGCCGCATTTTTATCCGTCGG
66 AACGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATATGCTGGTGCCGCATTTTTATCCGTCGG
* * *
16902914 GGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCGATGGGATTCCGGCGATCGGGGG
131 GGCACCATCGTCGAAGCATCACCGAAGAACCTGACCGACGGCGATGGGATTCCGACGATCGGGGG
* **
16902979 GCCGAGGGGGTGTGCACGCATGATGTGCGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCAT
196 GCCGAGGGGGTGTGCACACATGATGCACGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCAT
*
16903044 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
261 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
16903109 GCTAGTAGCCACAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
326 GCTAGTAGCCACAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
16903174 TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
391 TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * *
16903239 TTGTTCCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
456 TTGGGCCCAAAAATCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
*
16903304 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAAGTAA
521 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTAA
* * *
16903349 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTGCCAGTCTAAGATTGTACTA-
1 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATCGGA-TAG
* * * * * *
16903413 GACCGAGGGTTGCGGCAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
65 GAACGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATATGCTGGTGCCGCATTTTTATCCGTCG
** * * *
16903478 GGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGGC-ATTGGGGTTTCGACGATCGGG
130 GGGCACCATCGTCGAAGCATCACCGAAGAACCTGACCGACGGCGA-TGGGATTCCGACGATC-GG
* ** **
16903542 GGGGCCGGGGGGGTGTGTGCACATGATGCACGATGGGTGCT-GATACTTGGCCCTTATATTGGCC
193 GGGGCCGAGGGGGTGTGCACACATGATGCACGATGGGCACTAG-TACTTGGCCCTTATATTGGCC
* *
16903606 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
257 CCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
16903671 TGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATTGTCACAAAATCTTG
322 TGCTGCTAGTAGCCA-CAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
16903736 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
386 TACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* **
16903801 CAAGTTTGGGGCCAAAAATCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGA
451 CAAGTTTGGGCCCAAAAATCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
* * *
16903866 AAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
516 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTAA
16903916 AGGC
1 AGGC
16903920 TTAAGGGACC
Statistics
Matches: 513, Mismatches: 53, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
564 1 0.00
565 161 0.31
566 135 0.26
567 216 0.42
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (565 bp):
AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATCGGATAGG
AACGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATATGCTGGTGCCGCATTTTTATCCGTCGG
GGCACCATCGTCGAAGCATCACCGAAGAACCTGACCGACGGCGATGGGATTCCGACGATCGGGGG
GCCGAGGGGGTGTGCACACATGATGCACGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCAT
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCTAGTAGCCACAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGCCCAAAAATCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTAA
Found at i:16904288 original size:26 final size:26
Alignment explanation
Indices: 16904251--16904303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16904241 GTTGACTTAG
16904251 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16904277 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16904303 G
1 G
16904304 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16905086 original size:900 final size:899
Alignment explanation
Indices: 16903349--16909155 Score: 7920
Period size: 903 Copynumber: 6.5 Consensus size: 899
16903339 CTTCAAGTAA
* * * * **
16903349 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTGCCAGTCTAAGATTGTACTAG
1 AGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* *
16903414 ACCGAGGGTTGCGGCAGCACATGCTT-GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
65 ACCGAGGGTTGCGGCAGCACATG-TTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* *
16903478 GGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGG
129 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* ** *
16903543 GGGCCGGGGGGGTGTGTGCACATGATGCACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCC
194 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
16903608 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
16903673 CTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATTGTCACAAAATCTTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
16903738 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
389 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * **
16903803 AGTTTGGGGCCAAAAATCCTTGCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAA
**
16903868 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
519 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
16903933 GTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
584 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
16903998 CCTACCACCCTACCGATGCACGACTTGTGCATCCCGTCTCTCTGCCCGGCATAGTTG-CCGCCCG
649 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAG-TGCCCGCCCG
*
16904062 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACT
713 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * * ** *
16904127 AGACTGAGGGCTACGATAGCAGGATTGGCAGCACATAGAAGGGGACCCGATCGATCCCCGACTTG
778 AGACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTG
*
16904192 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
843 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
16904249 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGG
1 AGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* ** * * *
16904314 ACGGAGGGTTGCGATAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCCGG
65 ACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* ** * * *
16904379 GGCACCCTCACCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGG
130 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* ** *
16904444 GACCGGGGGGGTGTGCGCACATGATGTGTTATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC
195 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * * *
16904509 TATCCCTCATCAATCCTTGAGAACTCACACCCACTTAAGGAGCATTTGAGATTTTATAGGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16904574 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
16904639 ACTTTGAGTTTTTAGCTGAATTTATTTGTGCACGCCAACAAAATTACAGGGATCATGTCAACCAA
390 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
16904704 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAGAAAGTTTCAAAAA
455 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAA
*
16904769 TCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTG
520 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
16904834 TATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
585 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
16904899 CTACCACCCTATCGATGCACGACTTGTGCATCCCGTCTCTCTGCCCGGCATAGTTG-CCGCCCGC
650 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAG-TGCCCGCCCGC
*
16904963 CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACTA
714 CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
* * *
16905028 GACCGAGGGTTGCAGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTAC
779 GACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGC
* * *
16905093 GCATCCCGCCCCTCTGGCCGGCAGACCGCCCGCACGCTCGTTTCGTGGGTTAACTT
844 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * **
16905149 AGGCATACGAAGTTCATTCTCAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAGATTGG
1 AGGCATACG-AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* * *
16905214 ACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCAGG
65 ACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * ** * * *
16905279 GTCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTC-GCATTAGGGTTTCGACGATCGGGG
130 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGG
* * * *
16905343 GGGCC-GGGGGGTGTGCGCACATGTTGTGAGGTGGGTGCTGGTACTTGGCCCTTATATTGGGCCC
194 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16905407 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
16905472 CTGCAAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * *
16905537 CACTTTGAGTTTTTAGCTGAATTTGTTTGTGCACGCCAACAAAATTACAGGGATCATGTCAACCA
389 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
16905602 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAGAAAGTTTCAAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAA
*
16905667 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATT
519 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
16905732 GTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
584 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
16905797 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCCCGC
649 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG--C-C
* * ** * *
16905862 ACGCCCGCCCGTTCGTTTCTTTGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATC-G
711 -CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
16905926 AACTGGACTGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGG
775 -ACTAGACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGA
** * *
16905991 CTTGCGCATCCCGCCGTTCTGGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTT
839 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
16906052 AGGCATACGAAGTTCATTCCTAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
1 AGGCATACG-AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* * ** * * *
16906117 ACCGATGGTTGCGGCAGCACATGCTGGTTTCGGGCATGTGTTGGTGCCGCATTTCTCTTCGTCGG
65 ACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* *
16906182 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG
130 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
*
16906247 GGCC-GGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
195 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
16906311 TATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
16906376 TACCAGTAGCCATTAAAGTATCTTAAATGGGGACACTTTTTT-AAATGGTCACAAAATCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
16906440 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTACC-
390 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCA
* * * * * * *
16906504 TGATTTGGGACCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCGAA
454 AG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAA
* *
16906569 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGAGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
16906634 TGGATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
16906699 ACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC--
* * * *
16906764 CATGCCCGCCCGCTCCTTTCTTCAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAACATC-
711 C--GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
16906828 GAACTAGACTGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
774 G-ACTAGACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* ** * *
16906893 GCTTGCGCATCCCGCCGTTCTGGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTT
838 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
16906955 AGGCATACGAAGTTCATTCCTAGTGTAAGCATACGGAGTTCATTCCCAGACTAAGATCGGATCGG
1 AGGCATACG-AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * *
16907020 ACTGATGGTTGCGGCAGCACATGGTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
65 ACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * * * * *
16907085 GGCACCATCGCCGAAGCATCGCCAGAGAACTTGACCGACGGCATTGGGCTTCCGGCGATCGGGGG
130 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
16907150 GGCC-AGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCC
195 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16907214 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16907279 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAAATCTTGTA
325 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTA
* * * *
16907344 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAA-AAAAAAATAGGGATCACGTCTACCA
389 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * **
16907408 AGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAA
* * *
16907473 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATT
519 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
16907538 GTATGAATTTGA-AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
584 GTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
16907602 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG----CCCG
* * * * **
16907667 CCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATTG
709 CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * * *
16907732 GAC-CGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCGGAGGGGGACCCAACCAATCCCC-
774 GACTAG-ACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * * * *
16907795 AGCTTTCG-ATCCCGCCCCTCTGGCTGGCTGAGCGCCTGAACACTCGTTTCGTGGTTTGAC-T
838 A-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
16907856 -----TA-G-G--------CA---T----ATA-G-AGTTCATTCCCAGTCTAAGATCAGACCGGA
1 AGGCATACGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * *
16907897 CTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG-TCGGTGCTGCATTTTTCTTCACCGA
66 CCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGG
*
16907961 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG
130 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
** * * *
16908026 ATCAGGGGTGGGGTGTGCGTACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCC
195 GGC-CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16908091 CCTATCCCTCATCAAACCTTGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
16908156 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
**
16908221 ACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
388 ACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * **
16908286 CAAGTTTGCGGCCAAAACTCTTTTCC--AAAAATTTTAAAAAATCTCGAGCCACAAAAAGTTTTG
452 CAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCA
**
16908349 AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
516 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
16908414 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATTTGAAGATGTGCATAAAC
581 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * ** * **
16908479 CCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTTTTTCTGGCCGGTGTAGTGCCTGAT
646 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
* * * * *
16908544 CGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCAGA
711 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * ** * ** * * *
16908609 CCGGATCAAGGGTTACGCCAGTAGGATTAACAGCACGCAGAGGGTGACCCGACCGATCCCCGGCT
776 CTAGACCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
*
16908674 TGCACATCCCG-CCC-CT------CT--------G---GC-C---TCGTGGGTTGACTT
841 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
16908710 AGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGG
1 AGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* * ** * *
16908775 ACCGAAGGTTGTGATAGCACATGTTGGGCTCGGGCAAGTGCTGGTGCCACATTTTT-TT-GCATC
65 ACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC--C
* * * ** *
16908838 GGGGCACCATCGTCGGAGCATCGTCGAAGAACCT-AGCCGGCAGCATTGGGGTTCCGGTGATCGA
128 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCGG
*
16908902 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCC
192 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
16908967 CCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTC
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
16909032 TGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
16909097 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGACAACAAAAATACAAGGATCAC
387 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
16909156 ATCTTTCTGG
Statistics
Matches: 4427, Mismatches: 413, Indels: 158
0.89 0.08 0.03
Matches are distributed among these distances:
853 11 0.00
854 1 0.00
856 1 0.00
857 1 0.00
859 2 0.00
860 1 0.00
861 1 0.00
862 1 0.00
868 2 0.00
870 1 0.00
873 1 0.00
874 2 0.00
875 115 0.03
876 180 0.04
877 203 0.05
878 43 0.01
879 523 0.12
880 39 0.01
881 4 0.00
882 1 0.00
885 1 0.00
893 1 0.00
895 1 0.00
896 2 0.00
898 2 0.00
899 485 0.11
900 1000 0.23
901 6 0.00
902 106 0.02
903 1624 0.37
904 11 0.00
905 49 0.01
907 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
AGGCATACGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
CCGAGGGTTGCGGTAGAAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
Found at i:16905187 original size:26 final size:26
Alignment explanation
Indices: 16905151--16905203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905141 GTTAACTTAG
* *
16905151 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
16905177 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
16905203 G
1 G
16905204 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:16906083 original size:26 final size:26
Alignment explanation
Indices: 16906054--16906106 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16906044 GTTGACTTAG
* *
16906054 GCATACGAAGTTCATTCCTAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16906080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16906106 G
1 G
16906107 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16907009 original size:26 final size:26
Alignment explanation
Indices: 16906957--16907009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16906947 GTTGACTTAG
* **
16906957 GCATACGAAGTTCATTCCTAGTGTAA
1 GCATACGAAGTTCATTCCCAGACTAA
*
16906983 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
16907009 G
1 G
16907010 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:16908748 original size:26 final size:26
Alignment explanation
Indices: 16908712--16908764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16908702 GTTGACTTAG
*
16908712 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16908738 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16908764 G
1 G
16908765 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16909404 original size:26 final size:26
Alignment explanation
Indices: 16909374--16909426 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16909364 GCTGACTTAG
16909374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16909400 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16909426 G
1 G
16909427 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16911734 original size:901 final size:892
Alignment explanation
Indices: 16909165--16911876 Score: 3596
Period size: 905 Copynumber: 3.0 Consensus size: 892
16909155 CATCTTTCTG
* * * * *** *
16909165 GCCGGCGTAGTGCCCGCCCGCCCGCACGCTCATTTTGTCA-GTTGGCTTAGGCGTACGGAGTTCA
1 GCCGGCGTAATGCCCGCCCACCCGCCCGCTCGTTACAT-AGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** * *
16909229 TTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGTAGGATCGACAGCTCATAAAAGGGG
65 TTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGAGGGGG
* * *
16909294 ACCCGGCCAATCCCCGACTTGCGCATCCCT-CCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTT
128 ACCCGACCAATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
16909358 TCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
192 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
* * * * ** * *
16909423 TAAGATCGGACCGGACCGAAGGTTATGACAGCACATGCTGGTTTCGAGCATGTGCTGGTG-GCAC
257 TAAGATCAGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTG-GC
* * * *
16909487 ATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTAACGACATTGGGGT
320 ATTTTTCTTC-ACCGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-AGCGGCATTGGGGT
* *
16909552 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCC
383 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCC
* * *
16909617 TTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
448 TTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
16909682 TTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAATTGGTC
513 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA-TGGTC
* **
16909747 ACAAAATCTTGTACATTTCGAGTTTTTAGCTGAACGTTTTTGTGCATGCCAAAAAAAATACAAGG
577 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* *
16909812 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTGAAAAATCCCGAA-C-TC
642 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCCGAACCGT-
**
16909875 TAAAAGGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
705 TAAAA-GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
16909940 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGTACGCAGAAATATGAAT
769 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
16910005 ATGTACCTAAACCCACCAACCACCCTATC-ATCCACGGCTTGCGCATCCCGTCTCTTTG
834 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATA
* * * * * *
16910063 GCCGGCCTAGTGCCCGCCCACCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGCGTTCAT
1 GCCGGCGTAATGCCCGCCCACCCGCCCGCTCGTTACATAGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
16910128 TCCCAATCTAAGATCGGTCCGAACCGAGGCTTGTGGTAGCAGGATTGGCAGCATGCAGAGGGGGA
66 TCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGCAGGA-TCGCAGCACGCAGAGGGGGA
* * * *
16910193 CCCGACCAATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTC
129 CCCGACCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
16910258 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAGTCTA
194 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
* * * * * *
16910323 AGATCAGACTGGACCGAGGGTTGCGGCACCCCATGCTAGGCTTGGG-ATGTGCTGGTGTCGCATT
259 AGATCAGAC-GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTGGCATT
* * * * * *
16910387 TTTCTTCTCCGGGGCACCATC-ACAGGAGCAACGCCGGAGAACCTAACAAGAGGCATTGGGGATC
323 TTTCTTCACC-GGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC-AGCGGCATTGGGGTTC
* * * *
16910451 CGACGATCAGGGGGGTCGGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGTACT
385 CGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC---TA----GTACT
16910516 TGGCCCTTATATTGGCCCCCTAT-CGATCATCAAACCTCGAGAACTCACA-CCCCTGTAAAGAGC
442 TGGCCCTTATATTGGCCCCCTATCCG-TCATCAAACCTCGAGAACTCACACCCCCT-TAAAGAGC
*
16910579 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTC
505 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16910644 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAGAAA
570 -AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAA
* * ** * *
16910708 AATACAAGGATCATGTCTACCAACTTTGGTTCCAAAACTTCTTTCGAAAAAATTGTAAAAAATCC
633 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAATCC
* ** *
16910773 CGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
697 CGAACCGTTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16910838 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAA
762 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
16910903 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CATGGCTTGCGCATCCCGTCTCTCT
827 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT
16910967 A
892 A
* * *
16910968 GCCGGCGTAATGGCCGCCTGCACGCCCGCCCGCTCGTTACGTAGGTTGGCTTAGGCATACGGAGC
1 GCCGGCGTAATGCCCGCC--CA--CCCGCCCGCTCGTTACATAGGTTGGCTTAGGCATACGGAGT
* * *
16911033 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGAGG
62 TCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCAGGATC-GCAGCACGCAGAGG
* * * * *
16911098 GGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCGTCTGGCCGACTGAGCGCCCGCACGCTCG
125 GGGACCCGACCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
16911163 TTTCGTGGGTTGACTTAGGCAGAGGGAGTTCATTCCCAGTCTAAGTATATGGAGTTCATTCCCAG
190 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
* * * * *
16911228 TCTAAGATAAGATCGGATCGAGGGTTACGGTAGCACATACTGGGCTCGGGCTTGTGCTGGTGTGG
255 TCTAAGATCAGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTGG
*
16911293 CATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGTCGGCATTGGGG
319 CATTTTTCTTCACCG-GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACAG-CGGCATTGGGG
* * * *
16911358 TTCTGGCGATCGGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCC
382 TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCC
16911423 CTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTTGAG
447 CTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
16911487 ATTTTACAGGTATACTGCCAGTAGCTAATAAATTGTCTGAAATGGGGACACTTTTTTCTAATGGT
512 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AATGGT
* * * *
16911552 TACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAGG
576 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * **
16911617 GATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTTGAACCGT
641 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-AAAAAATCCCGAACCGT
* * *
16911682 TAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTTACGTGAAGG
705 TAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
16911747 CTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATATGAAGA
770 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
16911812 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCGGTCTCTATA
835 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATA
16911870 GCCGGCG
1 GCCGGCG
16911877 CAGTTCTCAC
Statistics
Matches: 1576, Mismatches: 198, Indels: 76
0.85 0.11 0.04
Matches are distributed among these distances:
896 3 0.00
897 77 0.05
898 282 0.18
899 2 0.00
900 1 0.00
901 331 0.21
902 84 0.05
903 7 0.00
904 12 0.01
905 410 0.26
906 10 0.01
907 2 0.00
908 1 0.00
909 278 0.18
910 75 0.05
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GCCGGCGTAATGCCCGCCCACCCGCCCGCTCGTTACATAGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGATCGCAGCACGCAGAGGGGGACC
CGACCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
ATCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTGGCATTTTT
CTTCACCGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACAGCGGCATTGGGGTTCCGACGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
GCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCGTTAAAAGTTTTA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATA
Found at i:16912081 original size:189 final size:185
Alignment explanation
Indices: 16911732--16912105 Score: 597
Period size: 189 Copynumber: 2.0 Consensus size: 185
16911722 CTTGCTATGA
* *
16911732 AACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAC
1 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGCCAC
**
16911797 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCGG
66 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCA
* *
16911862 TCTCTATAGCCGGCGCAGTTCTCACCCGCCCGCCCGCCCATTTGTTTCGTCGGTTGGCT
131 TCTCTATAGCCGGCGCAGTGCTCACCCGCCCGCCCG----TTTGTTTCGTCAGTTGGCT
16911921 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGCCAC
1 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGCCAC
* *
16911986 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
66 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCA
** *
16912051 TCTCTATTA-CCGTTGCAGTGCTCGCCCGCCCGCCCGTTTGTTTCGTCAGTTGGCT
131 TCTCTA-TAGCCGGCGCAGTGCTCACCCGCCCGCCCGTTTGTTTCGTCAGTTGGCT
16912106 TAGGCATACG
Statistics
Matches: 173, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
185 18 0.10
189 153 0.88
190 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (185 bp):
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGCCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCA
TCTCTATAGCCGGCGCAGTGCTCACCCGCCCGCCCGTTTGTTTCGTCAGTTGGCT
Found at i:16914096 original size:26 final size:26
Alignment explanation
Indices: 16914062--16914112 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914052 TGACTTAGGC
*
16914062 ATACGGAGTTCATTCCCAATCTAAGT
1 ATACAGAGTTCATTCCCAATCTAAGT
*
16914088 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
16914113 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGT
Found at i:16915752 original size:26 final size:26
Alignment explanation
Indices: 16915722--16915774 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16915712 GTTGACTTAG
*
16915722 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
*
16915748 GCATACAGAGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16915774 G
1 G
16915775 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16916761 original size:26 final size:26
Alignment explanation
Indices: 16916730--16916782 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16916720 GTTGACTTAG
*
16916730 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
*
16916756 GCATACAGAGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16916782 G
1 G
16916783 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16917808 original size:159 final size:159
Alignment explanation
Indices: 16917443--16917811 Score: 377
Period size: 159 Copynumber: 2.3 Consensus size: 159
16917433 CCCGCCCGCC
* * * * * *
16917443 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCG
1 CGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCG
* * * * * * * *
16917508 AGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGAGGCCTAGTCGATCCCCGACTTGCGCATC
66 AGGGGTATGGCAGCAGGATCGACAGCACGCAGAGGGAGCCCGAGCCGATCCCAGACTTACGCATC
* * * *
16917573 CCGCCCCTTTGGCCAGTTGAGCGCCTACA
131 CCGCCCCTCTGGCCAGCTGAGCACCCACA
* * * * * *
16917602 CGCTCGTTTTGTGGGTCGATTTAGGCATACAGAGTTCACTCCCAGTCTAAGATTGGACCAAACCG
1 CGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCG
* * *
16917667 AGGGGTATGGTAGCAGGATCGACAGTACGCAGAGGG-GTACCCGA-CCGATCCTCAG-TTTACGC
66 AGGGGTATGGCAGCAGGATCGACAGCACGCAGAGGGAG--CCCGAGCCGATCC-CAGACTTACGC
* *
16917729 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
128 ATCCCGCCCCTCTGGCCAGCTGAGCACCCACA
* * * *
16917761 CGTTCATTTCGTGGGTTC-ACTTAGGCATACGGAATTAATTCCAAGTCTAAG
1 CGCTCATTTCGTGGG-TCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16917812 CATACGGAGT
Statistics
Matches: 170, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 1 0.01
159 162 0.95
160 7 0.04
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
CGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCG
AGGGGTATGGCAGCAGGATCGACAGCACGCAGAGGGAGCCCGAGCCGATCCCAGACTTACGCATC
CCGCCCCTCTGGCCAGCTGAGCACCCACA
Found at i:16917827 original size:26 final size:26
Alignment explanation
Indices: 16917785--16917837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16917775 GTTCACTTAG
16917785 GCATACGGAATTAATTCCAAGTCTAA
1 GCATACGGAATTAATTCCAAGTCTAA
* * *
16917811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTAATTCCAAGTCTAA
16917837 G
1 G
16917838 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTAATTCCAAGTCTAA
Found at i:16919112 original size:14 final size:14
Alignment explanation
Indices: 16919093--16919121 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16919083 AATACAAGGA
16919093 TCACGTCTACCAAG
1 TCACGTCTACCAAG
16919107 TCACGTCTACCAAG
1 TCACGTCTACCAAG
16919121 T
1 T
16919122 TTGGGGCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (14 bp):
TCACGTCTACCAAG
Found at i:16920525 original size:894 final size:892
Alignment explanation
Indices: 16918679--16923559 Score: 5564
Period size: 904 Copynumber: 5.5 Consensus size: 892
16918669 GTCGATTTAG
* * * * * * *
16918679 GCATATGGAGTTCACTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * * *
16918744 CTTGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCATCCGAGA
66 C-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16918809 ACCTGACCAGTC-GCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCACACATA-ATG
130 ACCTGACCAG-CAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACA-AGATG
* * *
16918872 TGCGATGGCTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGG-GGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
16918937 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCCGTAGCCATTAAAGTGTCCGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16919002 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
16919067 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCACGTCTACCAAGTTTGGGGCCAA
387 TGTGCATGCCAAAAAAAATACAA-G-----G-------A-TCACGTCTACCAAGTTTGGGGCCAA
* * *
16919132 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
438 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA
*
16919197 GAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
503 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
16919262 AGCCATAAAAATGGCCTGGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTAT
568 AGCCATAAAAATGGCATGGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
16919327 CGATCCATGGCTTGCGCATCCCATCTCTCTGGCCAGCGTAGTG-CCA-GCCCGCTCGTTTCGTGG
633 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACGCCCGCTCGTTTCGTCG
* * * *
16919390 GTTCGCTTAGGCATACGAAATTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGTTACGGTAGC
698 GTTGGCTTAGGCATACGGAATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGC
* *
16919455 AGGATCGACAGCACGCA-ACAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
763 AGGATCGACAGCACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * ** * *
16919519 CTGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTCACTTAGGCATATGGAGTTCACTCCCAATCTA
827 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
16919584 A
892 A
* * * *
16919585 GCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
**
16919650 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** *
16919715 ACCTGACCAGCATCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGCGGTATGCGCACAAGATGT
130 ACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACAAGATGT
*
16919780 GCGATGAGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCG
194 GCGATG-GGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
16919845 CACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16919910 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
16919975 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
16920040 AATTTTGAAAAATCCCGAACTC-TAAAAGGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCCCGAAC-CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
16920104 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
16920169 CATTGGCACATAGAAATATGAAGTTGTGCCTAAACCCACCAACTACCCTATCGATCCACGGGCTT
582 CATGGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTT
* * *
16920234 GCGCATCCCGTCTCTCTGACCGGCGTAGTG-CCA-GCCCGATCATTTCGTCGGTTGGCTTAGGCA
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *
16920297 TACGGAATTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGGTAGCAGGATCGACAGCA
711 TACGGAATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCA
* *
16920362 CGCAGCA-GGGGACCCGACCGATCCCCGGCTTGTGCA-CGCCGCCCCTTTGGCCAGCTGAGCGCC
776 CGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CCGCCCCTCTGGCCAGCTGAGCGCC
* * *
16920425 CACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
16920479 GCATATGGAGTTCATTCCAAGCCTAAGATCGGGCTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
16920544 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC--C--TG-
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
16920603 ACC-GA-C-G--GCATAGGGGTTCCGGA-GATCGGGGGCGGGCC-GGGGGGTGTGCGCAC---A-
130 ACCTGACCAGCAGCATTGGGGTTCC-GACGATC-GGGG-GGGCCGGGGGGGTGTGCGCACAAGAT
* *
16920657 -T--GAT---G-TGGTACTTGGCCTTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 GTGCGATGGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
16920715 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
16920780 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTCTACACTTCGGGTTTTTACCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
16920845 TGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* *
16920908 GAAATTTTAAAAAATCCCGAACCGTAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCG
452 -AAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
16920973 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16921038 GGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATGGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
16921103 TGCACATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCCGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------G-CC-CACGCCCGCTCGTTTCGTCGGT
* * * *** *
16921168 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTCGTGGCAGCAG
700 TGGCTTAGGCATACGGAATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAG
* * * * * * **
16921233 GATTGGCAGCACGTAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGG
765 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG
* * *
16921298 TTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
16921361 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * **
16921426 CTCGGCATGTGCAGGTGCCTCATTTTTCTTCGTCAAGGCACCATCGTCGGAGCATCGTCGGAGAA
66 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * * * * *
16921491 CTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGATGGAGGTGTGCACATACGATGTG
131 CCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACAAGATGTG
** *
16921556 CGATGGGTGCTGGTACTTGGCGTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
16921621 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16921686 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
16921751 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
16921816 ATTTTGAAAAATCCCGAACTC-TAAAAGGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAAC-CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
**
16921880 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATACC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16921945 ATGGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
583 ATGGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
16922010 GCATCCTGTCTCTCTGGCCGGAGTAGTGCCTACCCACCTTTCGGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCA-----C-GCCCGCTCGTTTCGTCGGTTGG
* * * * * *
16922075 CTTAGGTATACGGAGTTCATTCGTAGTCTAAGATCAGATCGGACCTAGGGTTGCGGTAGCAGGAT
703 CTTAGGCATACGGAATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGAT
* * * * *
16922140 TGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCAGCTT
768 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGC-T
* * * *
16922205 G-GCACCCGCACGCTCGTTTCGTTGGTTGGCTTAGACATACAGAGTTCATTCCCAGTCTAA
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * * *
16922265 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTCGCTGCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
16922330 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
16922395 ACCTGACCAACGGCATTGGGGTTCCAACGATCGGGGGGGCCAGGGGGGTGTGTGCACATGATGTG
130 ACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAAGATGTG
*
16922460 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCAC
195 CGATGGG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
16922525 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * **
16922590 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCACAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** ** *
16922655 TGCATGCCAACAAAAACACAAAGATCACGTCTACCAAGTTTGGGGCTTATGGGACTATTGTTCTT
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CA----AAAATCCTTC-C
* **** * * ** *** *
16922720 G-AAAAA---TAGAAAA---CG-A--GTCATCTTGCTATGAAACTTCACGTGAAGGCT---TAA-
448 GAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAG-TTTTAAAAATCA--TGAAAAATAGAAAAC
* * * * * * ** * * *** *
16922771 GGGAC-TATTG-TATG-AA-TTTAC---AA-GC--CA--GAAAAATG---GCATTGGTAAG-CAG
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *** * * * *
16922820 AAATATGAAG-ATGTG--C-C-----TA--AA-A-CCACCTACCACCCTATCGATCCACGGCT-T
574 AAAAATG--GCATGGGCACGCAGAAATATGAAGATGTGCCTA-AACCC-ACCTA-CCAC-CCTAT
* * * ** * * **
16922871 GCGCATCC-CGTCTCT-CTG--GCCAG-CGT-AGTGCCCGCCCG-CCTG-CC-CGCCCGCTCGTT
633 -CG-ATCCACGGCT-TGC-GCATCCCGTC-TCTCTGGCCG-GCGTAGTGCCCACGCCCGCTCGTT
* * * *
16922927 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTAGAT-TAAGATCGGACCGGATCGAGGGTT
692 TCGTCGGTTGGCTTAGGCATACGGAATTCATT-CCTAG-TCTAAGATCAGACCGGACCGAGGGTT
* * * * * * * *
16922991 ACGGCAGTAGGATC-AGCAGCACGCAGAGGGGGACTCGGCCGTTACCCGGCTTACGCATCCCACC
755 ACGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * * *
16923055 CCTCTGGCC-GACTGAGCGCTCGTAAGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATT
819 CCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
16923119 CCCAGTCTAA
883 CCCAGTCTAA
* * * * **
16923129 GCATACGGAGTTCGTTTCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
*
16923194 CTCGGTCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CTGGAG
66 CTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * * * * * *
16923258 AACCTGACCGGCTGCATTGGGGTTCTGGCGATCGGGTGGGCCGGGGGGG-GCATGCACACATGAT
129 AACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG--TGCGCACAAGAT
* * * ** * *
16923322 GTGTGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCTATATCCTTCATCAAACCTCGAGAACT
192 GTGCGAT-GGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
16923387 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAATGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
16923452 AATGGGGGCACTTTTTTCAAATGGTCACAAAATCTGGTACACGTCGAGTTTTTAGCTGAATTTTA
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
16923517 TTATGCATGCCAACAAAAGTACAGGGATCACGTCTACC-AGTTT
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
16923560 AAGATCAGAC
Statistics
Matches: 3458, Mismatches: 413, Indels: 250
0.84 0.10 0.06
Matches are distributed among these distances:
863 48 0.01
864 291 0.08
865 214 0.06
866 2 0.00
869 4 0.00
870 102 0.03
871 336 0.10
872 1 0.00
873 4 0.00
874 4 0.00
875 13 0.00
876 13 0.00
877 11 0.00
878 8 0.00
880 2 0.00
881 46 0.01
882 242 0.07
883 25 0.01
884 17 0.00
885 17 0.00
886 2 0.00
887 4 0.00
888 10 0.00
889 2 0.00
890 7 0.00
891 7 0.00
892 29 0.01
893 215 0.06
894 325 0.09
895 1 0.00
896 6 0.00
897 3 0.00
898 5 0.00
899 9 0.00
900 4 0.00
901 5 0.00
902 8 0.00
903 4 0.00
904 856 0.25
905 167 0.05
906 160 0.05
907 216 0.06
908 1 0.00
909 11 0.00
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAAGATGTGC
GATGGGGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATG
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AATTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16921371 original size:26 final size:26
Alignment explanation
Indices: 16921335--16921387 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16921325 GTTGACTTAG
16921335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16921361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16921387 G
1 G
16921388 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16922276 original size:26 final size:26
Alignment explanation
Indices: 16922240--16922291 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922230 TTGGCTTAGA
16922240 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
16922266 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16922292 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:16923135 original size:26 final size:26
Alignment explanation
Indices: 16923105--16923155 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16923095 TGACTTAGGA
16923105 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
16923131 ATACGGAGTTCGTTTCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16923156 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16923732 original size:26 final size:26
Alignment explanation
Indices: 16923695--16923747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16923685 GTTGACTTAG
*
16923695 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16923721 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16923747 G
1 G
16923748 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16924093 original size:592 final size:593
Alignment explanation
Indices: 16922966--16924152 Score: 1657
Period size: 592 Copynumber: 2.0 Consensus size: 593
16922956 ATTCCCTAGA
* * *
16922966 TTAAGATCGGACCGGATCGAGGGTTACGGCAGTAGGATCAGCAGCACGCAGAGGGGGACTCGGCC
1 TTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCC
* * * *
16923031 GTTACCCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCTCGTAAGCTCGTTTCATGGGTT
66 GATACCCGGCTTACGCATACCACCCCTCTGGCCGACTGAGCGCCCGCAAGCTCGTTTCATGGGTT
* ** * * *
16923096 GACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTTCCAGTCTAAGATCGG
131 GACTTAGGAATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA
* * * **
16923161 ATCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGTCATGTGCTGGTGCCGTATTTTTCTTC
196 ATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * * * * * * *
16923226 GTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTGGGGTTCTGGCGATC
261 GCCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCTGCATTGGGGTTCCGACGATC
* * * * * *
16923291 GGGTGGGCCGGGGGGGGCATGCACACATGATGTGTGATCGGTGCTAGTACTTGGCCCTTATATTG
326 GGGGGGGCCGAGAGGGGCATCCACACATGATGTGCGATCGGTGCTAGTACTTGGCCCTTATACTG
* * * *
16923356 GCCCTATATCCTTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
391 GCCCCATATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16923421 GTTTGCTGCCAGTAACCATTAAAATGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATC
456 GTTTGCTGCCAGTAACCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
16923486 TGGTACACGTCGAGTTTTTAGCTGAAT-TTTATTATGCATGCCAACAAAAGTACAGGGATCACGT
521 TGGTACACGTCGAGTTTTTAGCTAAATGTTT-TTATGCATGCCAACAAAAATACAAGGATCACGT
16923550 CTACC-AGT
585 CTACCAAGT
* * *
16923558 TTAAGATCAGACCGGA-CTGAGGGTTATGGTAGCAGGATC-GACAGCACGTAGAGGGGGACCCGG
1 TTAAGATCAGACCGGATC-GAGGGTTACGGCAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGG
* * * * * * *
16923621 TCGAT-CCTTGGCTTGCGCATACCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
64 CCGATACC-CGGCTTACGCATACCACCCCTCTGGCCGACTGAGCGCCCGCAAGCTCGTTTCATGG
*
16923685 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAT
128 GTTGACTTAGGAATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAT
*
16923750 CGAATCGGACCAATGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
193 CGAATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * *
16923815 TTTGCCGAGGCACCATGGCCGGAGCATCACCGGAGAGCCTGACCAG-TGGCATTGGGGTTCCGAC
258 TTCGCCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCT-GCATTGGGGTTCCGAC
** * * * * *
16923879 GATCGGGGGGGCCGAGAGGGGTGTCCGCACATGATGTGCGTTGGGTGCTGGTACTTGGTCCTTAT
322 GATCGGGGGGGCCGAGAGGGGCATCCACACATGATGTGCGATCGGTGCTAGTACTTGGCCCTTAT
* *
16923944 ACTGGCCCCCTATCCCTCATCAAACATCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTT
387 ACTGGCCCCATATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
16924009 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAA
452 ACAGGTTTGCTGCCAGTAACCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
16924074 AATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCA
517 AATCTGGTACACGTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAACAAAAATACAAGGATCA
16924139 CGTCTACCAAGT
582 CGTCTACCAAGT
16924151 TT
1 TT
16924153 GGTTCCAAAA
Statistics
Matches: 519, Mismatches: 70, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
591 5 0.01
592 506 0.97
593 8 0.02
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (593 bp):
TTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCC
GATACCCGGCTTACGCATACCACCCCTCTGGCCGACTGAGCGCCCGCAAGCTCGTTTCATGGGTT
GACTTAGGAATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA
ATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
GCCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCTGCATTGGGGTTCCGACGATC
GGGGGGGCCGAGAGGGGCATCCACACATGATGTGCGATCGGTGCTAGTACTTGGCCCTTATACTG
GCCCCATATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAACCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TGGTACACGTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGT
Found at i:16924637 original size:26 final size:26
Alignment explanation
Indices: 16924600--16924652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924590 GTTGACATAG
*
16924600 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16924626 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16924652 G
1 G
16924653 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16927064 original size:26 final size:26
Alignment explanation
Indices: 16927028--16927104 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
16927018 GTTGACTTAG
*
16927028 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16927054 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16927080 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16927105 TGATCGGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16928170 original size:889 final size:888
Alignment explanation
Indices: 16927054--16930168 Score: 4231
Period size: 889 Copynumber: 3.5 Consensus size: 888
16927044 CCCATTCTAA
* * * * * *
16927054 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTATGATCGGGCCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * *
16927119 CGAGGGTT--GCTAGCACATGGTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * *
16927182 CACCATCGCCGGAGCATCGCCAAAGAACCTGACC-AGCGACATTGGGGTTTCGACGATCGGGGGG
131 CACCATCGCCGGAGCATCACCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
16927246 CCCGGGGGGTGTGCGCATATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTAGCCTCCTA
195 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
16927311 TCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
*
16927376 CCAGTAG-CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16927440 TTCAAGTTTTTAGCTGACTTCTTTTT-TGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAG
390 TTCGAGTTTTTAGCTGAATT-TTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAG
* *
16927504 TTTGGGGCCAAAACTTCTTTCGAAAAAATTTGAAAAAATCTCGAACCGCAAAAAGTTTCAAATAT
454 TTTGGGGCCAAAAC-TCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA-AT
* *
16927569 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
517 CGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
16927634 ATGAATTTACAAGCCATAAAAATGTCATTGACACGTAGAACTATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGTCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* *
16927699 TACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCCC
647 TACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCC
* * * * *
16927764 ACCCGCCCCCTTGTTTCATCGATTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGAC
712 ACCCG--CCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
16927829 CGGACCGAGGGTTAC-GGCT-GCA-CATAAAGGGGGACCCGAGCAATCCCAAGCTTGCGCATCCC
775 C-GACAGAGGGTTACGGGCTCGCAGCATAGAGGGGGACCCGACCGATCCC-AGCTTGCGCATCCC
*
16927891 ATCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
838 ATCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16927942 GCATACGGAGTTCATTCCTAGTGC-AAGCATACGGAGTTCATTGCCA-TCTAAGATTGGACCAGA
1 GCATACGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * *
16928005 CCGAGGGTTGCGGTAGCATATGCTAGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTGCCGGG
65 CCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * * *
16928070 GCACCATCGTCGGAGCATCACCGGAGAACTTCACCGGCGGCATTGGGGTTCCAACGATCGGGGGG
130 GCACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * *
16928135 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTA
195 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16928200 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
* * *
16928265 CTAGTAGCCATTAAGGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
16928330 ATCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGT
* * *
16928395 TTGGGGGCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCG
455 TTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAATCG
16928460 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
519 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
16928525 GAATTTTCAAGCCATAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
584 GAATTTACAAGCCAT-AAAAATGTCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
16928590 ACCACCCTATCGATCCACGGCTTGTGCAT-CTCGTCTTTCTGGCCAGCT-TAGTGCCCGCCCGTC
648 ACCACCCTATCGATCCATGGCTTGCGCATCCT-GTCTCTCTGGCC-GGTGTAGTGCCCGCCCGTC
*
16928653 CACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
711 CACCCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
16928718 CCAGACAGAGGGTTGCGGTAGCAAGATTGGCAGCATGTAGAGGGTGACCCAACCGATCCCCAGCT
774 CC-GACAGAGGGTTACGG--GC-----TCGCAGCA--TAGAGGGGGACCCGACCGAT-CCCAGCT
* * * * * **
16928783 TGCACATCTCACCCCTTTAGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
828 TGCGCATCCCATCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16928844 GCATACGGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACC-GAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
* * * *
16928908 CCGAGGATTACGATAGCACATACTGGGCTCG-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGG
65 CCGAGGGTTACGGTAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * * * * *
16928972 GGCACCATCACCGGAGGATCGCTGGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGG
129 GGCACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGG
* * *
16929037 GGTCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
193 GGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16929102 TATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
*
16929167 TG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* ** * * *
16929231 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTGAACAAAAATAAAAGGATCATGTCTACCAG
388 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAA
* *
16929296 GTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAA
453 GTTTGGGGCCAAAACTCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAA
* *
16929361 TCGTGAAAAATAGAAAATGAGTCATCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTG
516 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
16929426 TATGAATTTACAAGCCATAAAAATGGT-ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
581 TATGAATTTACAAGCCATAAAAAT-GTCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
*
16929490 CCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGT
645 CCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGT
* * *
16929555 CCA------CTCGTTTCGTCGGTTGGCTTAGGCTTACGAAGTTCATTCCCAGTCTAAGATCGGAC
710 CCACCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
16929614 CGAGCTGAGGGTTACGGTAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTT
775 CGA-CAGAGGGTTAC----G--GGCTCG-CAGCAT--AGAGGGGGACCCGACCGATCC-CAGCTT
* * * * * * *
16929679 TCGCATCCCGTCCCTCAGGCCGGCTAAGCGCTCGTACGCTTGTTTCGTGGGTTGACTTAG
829 GCGCATCCCATCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * **
16929739 GCATACGAAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
16929804 CAAGGGTTACGGCAGCACATGCTGGTCTCGAGCATGTTCTGGTGCCGCATTTTACTTCACCGGGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * * *
16929869 CACCATCGTCGGAGCATCACCGAAGAACCTGACCGATGGAATTGGGGTTTCCGGCGATCGAGGGC
131 CACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGG-TTCCGACGATCGGGGGG
* *
16929934 CCCGGGGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
195 CCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** *
16929999 ATCCCTCATCAAACCTCGAGAACAAACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
* *
16930064 GCCAGTAGCCATGAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
16930129 CTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
389 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
16930169 GTTTGGGGCC
Statistics
Matches: 1958, Mismatches: 220, Indels: 89
0.86 0.10 0.04
Matches are distributed among these distances:
887 21 0.01
888 42 0.02
889 352 0.18
890 289 0.15
891 3 0.00
893 3 0.00
894 6 0.00
895 286 0.15
896 130 0.07
897 95 0.05
898 1 0.00
899 5 0.00
900 2 0.00
901 1 0.00
902 116 0.06
903 352 0.18
904 254 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
CACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCGTG
AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGTCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCACCC
GCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACAG
AGGGTTACGGGCTCGCAGCATAGAGGGGGACCCGACCGATCCCAGCTTGCGCATCCCATCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16928896 original size:26 final size:26
Alignment explanation
Indices: 16928844--16928896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16928834 GTTGACTTAG
* * *
16928844 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16928870 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16928896 G
1 G
16928897 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16929240 original size:903 final size:898
Alignment explanation
Indices: 16927054--16930168 Score: 4296
Period size: 903 Copynumber: 3.5 Consensus size: 898
16927044 CCCATTCTAA
* * * * * * *
16927054 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTATGATCGGGCCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGAC
* * * * *
16927119 CGAGGGTT--GCTAGCACATGGTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * *
16927182 CACCATCGCCGGAGCATCGCCAAAGAACCTGACC-AGCGACATTGGGGTTTCGACGATC-GGGGG
131 CACCATCGCCGGAGCATCACCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
16927245 GCCCGGGGGGTGTGCGCATATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTAGCCTCCT
195 GCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16927310 ATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTT
260 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
*
16927375 GCCAGTAG-CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
325 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
16927439 CTTCAAGTTTTTAGCTGACTTCTTTTT-TGCATTCCAAAAAAAATACAAGGATCACGTCTACCAA
390 CTTCGAGTTTTTAGCTGAATT-TTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAA
* * * *
16927503 GTTTGGGGCCAAAACTTCTTTCGAAAAAATTTGAAAAAATCTCGAACCGCAAAAAGTTTCAAATA
454 GTTTGGGGCCAAAAC-TCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAA
* *
16927568 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
16927633 TATGAATTTACAAGCCATAAAAATGTCATTGACACGTAGAACTATGAAGATGTGCCTAAACCCAC
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16927698 CTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCC
648 CTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGCT-TAGTGCCCGCCCGTC
* * * * *
16927763 CACCCGCCCCCTTGTTTCATCGATTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGA
712 CACCCG--CCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
16927828 CCGGACCGAGGGTTAC-G--GC----T-GCA-CA--TAAAGGGGGACCCGAGCAATCCCAAGCTT
775 CC-GACAGAGGGTTACGGTAGCAGATTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAGCTT
* * *
16927882 GCGCATCCCATCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
839 GCGCATCCCATCCCTTTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16927942 GCATACGGAGTTCATTCCTAGTGC-AAGCATACGGAGTTCATTGCC-ATCTAAGATTGGACCAGA
1 GCATACGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGA
* * * * * *
16928005 CCGAGGGTTGCGGTAGCATATGCTAGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTTGCCGGG
65 CCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * * *
16928070 GCACCATCGTCGGAGCATCACCGGAGAACTTCACCGGCGGCATTGGGGTTCCAACGATCGGGGGG
130 GCACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
16928135 G-CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACT
195 GCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16928199 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
260 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
* * *
16928264 GCTAGTAGCCATTAAGGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
325 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
16928329 CATCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAG
390 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAG
* * *
16928394 TTTGGGGGCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
455 TTTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATC
16928459 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
520 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16928524 TGAATTTTCAAGCCATAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
585 TGAATTTACAAGCCAT-AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
16928589 TACCACCCTATCGATCCACGGCTTGTGCAT-CTCGTCTTTCTGGCCAGCTTAGTGCCCGCCCGTC
649 TACCACCCTATCGATCCATGGCTTGCGCATCCT-GTCTCTCTGGCC-GCTTAGTGCCCGCCCGTC
*
16928653 CACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
712 CACCCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
16928718 CCAGACAGAGGGTTGCGGTAGCAAGATTGGCAGCATGTAGAGGGTGACCCAACCGATCCCCAGCT
775 CC-GACAGAGGGTTACGGTAGC-AGATTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAGCT
* * * **
16928783 TGCACATCTCACCCCTTTAGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
838 TGCGCATCCCATCCCTTTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16928844 GCATACGGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACC-GAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAG-A
* * * *
16928908 CCGAGGATTACGATAGCACATACTGGGCTCG-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGG
65 CCGAGGGTTACGGTAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * * * * *
16928972 GGCACCATCACCGGAGGATCGCTGGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGG
129 GGCACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
16929037 GGTCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
194 GGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16929102 TATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
259 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
*
16929167 TG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTAC
324 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* ** * * *
16929231 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTGAACAAAAATAAAAGGATCATGTCTACCAG
389 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAA
*
16929296 GTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAA
454 GTTTGGGGCCAAAACTCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAA
* *
16929361 TCGTGAAAAATAGAAAATGAGTCATCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
16929426 TATGAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
*
16929491 CTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTC
648 CTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCC-GCTTAGTGCCCGCCCGTC
* * *
16929556 CA------CTCGTTTCGTCGGTTGGCTTAGGCTTACGAAGTTCATTCCCAGTCTAAGATCGGACC
712 CACCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
16929615 GAGCTGAGGGTTACGGTAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTT
777 GA-CAGAGGGTTACGGTAGCA-GATTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAGCTTG
* * * * * *
16929680 CGCATCCCGTCCC-TCAGGCCGGCTAAGCGCTCGTACGCTTGTTTCGTGGGTTGACTTAG
840 CGCATCCCATCCCTTTA-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
16929739 GCATACGAAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGAC
* * * * * *
16929804 CAAGGGTTACGGCAGCACATGCTGGTCTCGAGCATGTTCTGGTGCCGCATTTTACTTCACCGGGG
66 CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * *
16929869 CACCATCGTCGGAGCATCACCGAAGAACCTGACCGATGGAATTGGGGTTTCCGGCGATC-GAGGG
131 CACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGG-TTCCGACGATCGGGGGG
* * *
16929933 CCCCGGGGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
195 GCCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** *
16929998 TATCCCTCATCAAACCTCGAGAACAAACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
259 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
* *
16930063 TGCCAGTAGCCATGAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
324 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
16930128 ACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
389 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
16930169 GTTTGGGGCC
Statistics
Matches: 1966, Mismatches: 223, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
887 21 0.01
888 41 0.02
889 351 0.18
890 289 0.15
891 3 0.00
893 2 0.00
894 5 0.00
895 298 0.15
896 130 0.07
897 95 0.05
898 1 0.00
899 3 0.00
900 2 0.00
902 117 0.06
903 361 0.18
904 247 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGAC
CGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
CACCATCGCCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCG
TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGCTTAGTGCCCGCCCGTCCACC
CGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACA
GAGGGTTACGGTAGCAGATTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATC
CCATCCCTTTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16929771 original size:26 final size:26
Alignment explanation
Indices: 16929742--16929791 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16929732 GACTTAGGCA
16929742 TACGAAGTTCATTCCCAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
*
16929768 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16929792 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:16930416 original size:26 final size:26
Alignment explanation
Indices: 16930377--16930433 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
16930367 GTGGGTCAAC
16930377 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
*
16930403 CTAAGCATATGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
16930429 CTAAG
1 CTAAG
16930434 ATCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:16931185 original size:26 final size:26
Alignment explanation
Indices: 16931156--16931207 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931146 TTGACTTAGA
*
16931156 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCACTCCCAGTCTAAG
*
16931182 CATACGGAGTTCACTCCCAGTCTAAG
1 CATACAGAGTTCACTCCCAGTCTAAG
16931208 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCACTCCCAGTCTAAG
Found at i:16931682 original size:774 final size:774
Alignment explanation
Indices: 16930194--16931700 Score: 2112
Period size: 774 Copynumber: 1.9 Consensus size: 774
16930184 TTCGACGTAG
* * * *
16930194 TGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACTGG
1 TGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTAG
* * * *
16930259 ACCGAGGGTTACGGTAACAAGATCGATAGCACGTAGAGGAGGACCCGGCCAATCCCCGGCTTGCG
66 ACCAAGGGTTACGGTAACAAGATCGATAGCACGCAGAGGAGGACCCGACCAATCCCCAGCTTGCG
* * * ** *
16930324 CATCGCACCCCTCTGGCCGGCTGAGCTCCTGTCTGCTCATTTCGTGGGTCAACCTAAGCATACGG
131 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGTCTGCTCATTTCAAGGGTCAACCTAAGCATACAG
* * *
16930389 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
196 AGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* *
16930454 GCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAAGCACCATCA
261 GCGACAGCACATGCTAGGCTCGAGCATGTGCTGGAGCCGCATTTTTCTTCGTCAAAGCACCATCA
* * *
16930519 CCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTGCGACGATCGGGGGGTCGAGGGGT
326 CCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTGCGACGATCAGGGGGCCGAGGGGT
* *
16930584 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
391 GTGCCCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * ** *
16930649 AACCACGAGAACTTGCGCCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
456 AACCACGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
16930714 TTAAAGTGTTTGAAATGGGGACACTTATTTCAAATGGGCACAAAGTCTTGTACACTTCGAGTTTT
521 TTAAAGTGTCTGAAATGGGGACACTTATTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTT
* *
16930779 TAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAA
586 TAGCTAAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * * ** *
16930844 AACTCCTTCCGAAAAATTTTTTAAAAATCCCAAACCGTAAAAATTTTTGAAAATCGTGAAAAATA
651 AAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATA
*
16930909 GAAAATGAGTCGTCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTTCCACCTGTCCACT
716 GAAAACGAGTCGTCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTTCCACCTGTCCACT
* * * *
16930968 TGCCCGCTCGTTTCATCGATTGGCTTAGGCATACATAGTTCATTCCCAGTCTAAGATCTGA-TCA
1 TGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACT-A
** ** * * * * *
16931032 GACCAAGGGTTGTGGTAGTAGGATCGGTAGCATGCAGAGGGGGACCCGACCAATCCCCAGCTTGT
65 GACCAAGGGTTACGGTAACAAGATCGATAGCACGCAGAGGAGGACCCGACCAATCCCCAGCTTGC
* * * ** * ** *
16931097 GCATCCCGCCTCTTTGGTTGGCTGAGCGCCCG-CATGCTCGTTTCAAGGGTTGA-CTTAGACATA
130 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTC-TGCTCATTTCAAGGGTCAACCTAAG-CATA
16931160 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGG
193 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGG
***
16931225 GTTGC-AGCAGCACATGCTAGGCTC-AGGCATGTGCTGGAGCCGCATTTTTCTTC-TCTGGGGCA
258 GTTGCGA-CAGCACATGCTAGGCTCGA-GCATGTGCTGGAGCCGCATTTTTCTTCGTC-AAAGCA
*** * * * **
16931287 CCATCGTTGGAGCATCGCCGGAGAACCTGACTGGCGACATTGGTGTT-CAGGTGAT-AGGGGGCC
320 CCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTGC-GACGATCAGGGGGCC
*
16931350 AGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATC
384 -GAGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATC
*
16931415 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCC
448 CCTCATCAAACCACGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCC
* *
16931480 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
513 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTATTTCAAATGGGCACAAAATCTTGTACACTT
* * *
16931545 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
578 CGAGTTTTTAGCTAAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
*
16931610 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCAT
643 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCAT
*
16931675 GAAAAATAGAAAACGAGTTGTCTTGC
708 GAAAAATAGAAAACGAGTCGTCTTGC
16931701 AATGAAACTT
Statistics
Matches: 639, Mismatches: 86, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
773 17 0.03
774 622 0.97
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (774 bp):
TGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTAG
ACCAAGGGTTACGGTAACAAGATCGATAGCACGCAGAGGAGGACCCGACCAATCCCCAGCTTGCG
CATCCCACCCCTCTGGCCGGCTGAGCGCCCGTCTGCTCATTTCAAGGGTCAACCTAAGCATACAG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGACAGCACATGCTAGGCTCGAGCATGTGCTGGAGCCGCATTTTTCTTCGTCAAAGCACCATCA
CCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTGCGACGATCAGGGGGCCGAGGGGT
GTGCCCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCACGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTATTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTT
TAGCTAAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTTCCACCTGTCCACT
Found at i:16932085 original size:26 final size:26
Alignment explanation
Indices: 16932056--16932107 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16932046 TTGACTTATT
** *
16932056 CATACGGTTTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
16932082 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
16932108 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:16933757 original size:863 final size:872
Alignment explanation
Indices: 16932081--16935810 Score: 4288
Period size: 902 Copynumber: 4.2 Consensus size: 872
16932071 CCCAGTCTAA
* * * *
16932081 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * *
16932146 GCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCA-CC-CACCCTCTGGTCGGCTGAGC-C
66 GCACGCAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCGC-CCCTCTGGCCGGCTGAGCGC
* * ** *
16932208 CTTGCACGCTTGTTTCATGGGTTGACTTATTCATACGGTGTTCATTCCCAGTCTAAG-A-T-C--
129 C-TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTACTCCAG
* * * * * * **
16932268 AGATCAGACCGA-GGTTGCAGCAACACATGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCT
193 AGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * *
16932332 TCG-CTGGGGCACCATCGCCAGGGCATCGCCGAAGAACCTGACC-GGCGGTATTGGGATTCCGAC
258 TCGTCTGGGGCACCAT---C---G--TCG--G-AGAACCTGACCTGACGGCATTGGGATTCCAAC
*
16932395 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATAT
312 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
16932460 TGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
377 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
16932525 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACAAA
442 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAA
**
16932589 ATCTTGTACACTTCGAGTTTTTTCCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
506 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * ** * * * * * *
16932654 ATCTACCACGTTT-GGTTCAAAAACTCTTTTCAAAAAAATTTTAAAAAATCTCGAATCGTAAAAA
571 GTCTACCAAGTTTGGGGCCAAAATC-CATTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
* *
16932718 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
635 GTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * * *
16932783 GGGACCATTGTAGGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATACGAAGACGTGC
700 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * *
16932848 CTAAACCCACCTACCACCCTATCGATCCAC-GATTTACGCATCCCGTCTCTCTGGTCGGCGCAGC
765 CTAAACCCACCTACCACCCTATCGATCCACGGACTTACGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * *
16932912 GACCGCCCACCCACCCGCCCGCTCATTTTGTCGGTTGGCTTCG
830 GCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
16932955 GCATACGAAGTTTATTCCCAGTCTAAGATCGGA-CTGAACCGAGGGTTGTGGTAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTGTGGCAGCAGGATCGGC
* *
16933019 AGCACGCAGAGGGGGACCCGACCGATTCCCGACTTGCGCATGCCGCCCCTCTGCCCGACTGAGCG
65 AGCACGCAGAGGGGGACCCGACCGA-TCCCGACTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCG
* *
16933084 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-T-C-G
128 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTACTCCAG
*
16933145 -GATCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
193 AGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
*
16933209 TCGTC-GGGGCACCATCGTCGGAGAACCTGA-CTGACGGCATTGGGGTTCCAACGATC-GGGGGG
258 TCGTCTGGGGCACCATCGTCGGAGAACCTGACCTGACGGCATTGGGATTCCAACGATCGGGGGGG
* * *** *
16933271 CCAGGGGGTGTGCGCAAATGATGCATGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTAC
323 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16933335 CCCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGC
388 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16933398 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACT
453 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
16933463 TCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTT
518 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * *
16933528 TGGGAACAAAATTCCATTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
583 TGGGGCCAAAA-TCCATTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* * *
16933593 GAGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGAGACAATTGTA
647 GAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
16933658 TGACTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCAACT
712 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * * *
16933723 ACCACCCCATCGATCCACAG-CTTGCACATCCCGTCTCTTTGGCCGACGTTGTGCCCCCCCGCTC
777 ACCACCCTATCGATCCACGGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
**
16933787 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
842 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
16933818 GGATATGGAATTCATTCCCAGTCTAAGACCGGATCGAACCAAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
16933883 GCACGCAGAAGGGGACCCGGCCGATCCTCGGCTTACGTATCCCACCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGC
* * * *
16933948 CTACACGTTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
129 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--T----A-
* *
16934013 TTCATTCCCAGTCTAAGATCGGATCAGCCCGAGCGTTGA-GGCAGCACTTGCTGGGCTCGGGCAT
187 --C--T-CCAG----AGATCGG---A--CCGAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCAT
* *
16934077 TTGCTGGTGCCATATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
237 GTGCTGGTGCCACATTTTTCTTCGTCTGGGG---CA----C----CATCGTCGGAGAACCTGACC
* ** * *
16934141 TG-CGGCATT-GGAGTTTCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGACGG
291 TGACGGCATTGGGA-TTCCAACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * *
16934203 ATGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCC
354 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
16934268 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGGGGAC
419 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
16934333 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATG
484 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16934398 CCAA-AAAGAATACAAGGATCATGTCTACGAAG-TTGGGGCCAAAACTCC-TTCCGAAAAAATTT
549 CCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCATTCCAAAAAAATTT
* * *
16934460 TAAAAAATCCCAAACAGTAAAAAGTCTCAAAAATC-ATGAAAAATAGAAAACTAGTCGTCTTGCC
612 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGAGTCGTCTTGCC
* *
16934524 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTATAAGCCATAAAAATGGCATTG
676 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
16934589 GCACGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCTATCCACGG-CTTGCGCA
741 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGACTTACGCA
* * * *
16934653 TCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCACCTGCCCGCTCGTTTCATCGGTTGGCTT
806 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTT
16934718 AG
871 AG
* *
16934720 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * * *
16934785 GCATGCAGAGGGGGACCTGGCCAACCCCCAGCTTGCGCATACCGCCTCTCT-GCTTGGCTGAGCG
66 GCACGCAGAGGGGGACCCGACCGATCCCGA-CTTGCGCAT-CCGCCCCTCTGGC-CGGCTGAGCG
* * *
16934849 CCTGCATGCTCGTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACAGA
128 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-A
* * *
16934914 GTTCACTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCCA-CACATGCTGGGCTCAGGCA
184 G-T-ACTCC-AG----AGATC-G----GACCGAGGGTTAC-GGCAGCACATGCTGGGCTCGGGCA
* * *
16934978 TGTGCTGGAGCCGCATTTTTCTTC-TCTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
236 TGTGCTGGTGCCACATTTTTCTTCGTCTGGGGCACCATCGTCGGAG-A--ACC--TG-ACCTGAC
*
16935042 TGGCGACATTGGGATT-CAGGA-GATCGGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGAT
295 --G-G-CATTGGGATTCCA--ACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGAT
* *
16935105 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCC
352 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
16935170 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
417 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
16935235 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCA
482 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
**
16935300 TGCCAATTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT--ATTTCCAAAAAAAT
547 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCA-TTCCAAAAAAAT
* * * *
16935363 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGC
610 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGC
*
16935428 CATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGCAT
675 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGCAT
** * * * *
16935493 TCACATGCAGAAATATGAAAATGTGCCT-AACCCACCT-CC-CCTTATCGATCCACGGCCTTACG
739 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGACTTACG
* * * * *
16935555 CA-CCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCGACCGCTCGCTCGTTTCCGTCGGTT
804 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCAC--CCGCCCGCTCGTTT-CGTCGGTT
16935619 GGCTTAG
866 GGCTTAG
* * * * * *
16935626 GCATACGGAGTTCATT-CCAGTCCTAAGGTC--AACCAGACCGAGGGTTGCGGCAGCAGGATTGA
1 GCATACGGAGTTCATTCCCAGT-CTAAGATCGGATCGA-ACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * *
16935688 AAGCACGTAGAGGGGGACCCGACCGTTCACC-AGCTTACGCATCCTGCCCCTCTGGCTGGCCGAG
64 CAGCACGCAGAGGGGGACCCGACCGATC-CCGA-CTTGCGCATCC-GCCCCTCTGGCCGGCTGAG
* ** ** **
16935752 CCCCCACACGCTCGTTTCGTGGGTTGACTTATTCATACGGTTTTCATTCCCAGTCTAAG
126 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16935811 CATACGGAGT
Statistics
Matches: 2456, Mismatches: 285, Indels: 208
0.83 0.10 0.07
Matches are distributed among these distances:
862 127 0.05
863 432 0.18
864 47 0.02
865 44 0.02
866 29 0.01
867 1 0.00
869 3 0.00
870 1 0.00
871 1 0.00
873 1 0.00
874 88 0.04
875 4 0.00
876 79 0.03
877 60 0.02
878 2 0.00
879 1 0.00
884 6 0.00
887 1 0.00
889 59 0.02
890 1 0.00
891 11 0.00
892 3 0.00
894 3 0.00
895 1 0.00
896 4 0.00
897 6 0.00
898 1 0.00
899 5 0.00
900 43 0.02
901 47 0.02
902 509 0.21
903 110 0.04
904 374 0.15
905 271 0.11
906 73 0.03
907 3 0.00
908 1 0.00
910 2 0.00
911 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCGACTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTACTCCAGAGA
TCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
TCTGGGGCACCATCGTCGGAGAACCTGACCTGACGGCATTGGGATTCCAACGATCGGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAATCCATTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGAGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCC
GCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:16934013 original size:26 final size:26
Alignment explanation
Indices: 16933977--16934029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933967 GTTTACTTAG
*
16933977 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16934003 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16934029 G
1 G
16934030 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16934910 original size:26 final size:26
Alignment explanation
Indices: 16934880--16934931 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16934870 TTGACTTAGA
* *
16934880 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCACTCCCAGTCTAAG
*
16934906 CATACAGAGTTCACTCCTAGTCTAAG
1 CATACAGAGTTCACTCCCAGTCTAAG
16934932 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCACTCCCAGTCTAAG
Found at i:16935952 original size:184 final size:184
Alignment explanation
Indices: 16935661--16935994 Score: 474
Period size: 184 Copynumber: 1.8 Consensus size: 184
16935651 AGGTCAACCA
* * *
16935661 GACCGAGGGTTGCGGCAGCAGGATTGAAAGCACGTAGAGGGGGACCCGACCGTTCACCAGCTTAC
1 GACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGTAGAGGGGGACCCGACCGATCACCAGCTTAC
* * *
16935726 GCATCCTGCCCCTCTGGCTGGCCGAGCCCCCACACGCTCGTTTCGTGGGTTGACTTATTCATACG
66 -CATCCCGCCCCTCTGGCCGGCCGAGCCCCCACACGCTCGTTTCATGGGTTGACTTATTCATACG
*
16935791 GTTTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAACTAAGACAAGACCG
130 GTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAACTAAGACAAGACCG
* * ** *
16935846 GACCGAGGGTTGTGGCAGCAAGATCGATAGCACGTAGAGGGGGACCCGGTCGATC-CCTGGCTTT
1 GACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGTAGAGGGGGACCCGACCGATCACC-AGC-TT
* ****
16935910 A-CATCCCGCCCCTCTGGCCGGCTGAGCCCTTGGACGCTCGTTTCATGGGTTGACTTATTCATAC
64 ACCATCCCGCCCCTCTGGCCGGCCGAGCCCCCACACGCTCGTTTCATGGGTTGACTTATTCATAC
16935974 GGTGTTCATTCCCAGTCTAAG
129 GGTGTTCATTCCCAGTCTAAG
16935995 ATCAGACTGG
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
184 77 0.59
185 50 0.38
186 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (184 bp):
GACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGTAGAGGGGGACCCGACCGATCACCAGCTTAC
CATCCCGCCCCTCTGGCCGGCCGAGCCCCCACACGCTCGTTTCATGGGTTGACTTATTCATACGG
TGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAACTAAGACAAGACCG
Found at i:16936875 original size:26 final size:26
Alignment explanation
Indices: 16936846--16936898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936836 GTTGACTTAG
16936846 GCATACGGAGATCAGTCCCAGTCTAA
1 GCATACGGAGATCAGTCCCAGTCTAA
* * *
16936872 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCAGTCCCAGTCTAA
16936898 G
1 G
16936899 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCAGTCCCAGTCTAA
Found at i:16937215 original size:26 final size:26
Alignment explanation
Indices: 16937179--16937257 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
16937169 GTTGACTTAG
*
16937179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16937205 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16937231 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16937257 G
1 G
16937258 ATCGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16937574 original size:26 final size:26
Alignment explanation
Indices: 16937545--16937597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16937535 GTTGACTTAG
* *
16937545 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
16937571 GCATATGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16937597 G
1 G
16937598 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:16939123 original size:895 final size:890
Alignment explanation
Indices: 16937376--16943333 Score: 7227
Period size: 895 Copynumber: 6.7 Consensus size: 890
16937366 TCGGGCATGT
* * ** * *
16937376 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACGGACTGAGGGTTACGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
* * * * * ***
16937441 AGGATTGACACCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCTTTCCCTCTGGCC
66 AGGATCGACAGCACACAGAGGGGGACCCGGCTGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
16937506 GGCTAAGCGCCTGGACGATCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAA
130 GGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16937571 GCATATGGAGTTCATTCCCAGACTAAGATCAGACCAGACGGAGGGTTGCGGTAGCACATGCTGGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT----TAGCACATGCTGGG
* * * *
16937636 CTCGGGCATGTGCTGGAGGCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
255 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
16937701 ACCTGACCAGTGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGAGGGGGTGAGCGCACAAGATG
320 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC--GAGGGGGTGTGCGCACATGATG
* * *
16937766 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGTACTC
382 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * *
16937831 ACATTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTGTTTGAA
447 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16937896 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
512 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16937961 TTGCATGCCAAGAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
577 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
16938026 AATATTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTCAAAAATAGAAAACGAGTCGTCT
642 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
16938091 TGCCATGAAACTTCACATGAAGGCTTATGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
707 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16938156 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGC
772 ATTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16938221 ACATCCCGTCTTTCTGGCCGATGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCG
835 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCG
* ** * * * *
16938277 ATTTTCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTGTGACAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
* ** * * *
16938342 AGGATCGACAGCACACAGAGGGCGACAAGGCTGATCCTCAGCTTACGCATCCCACCCCTCTGGCC
66 AGGATCGACAGCACACAGAGGGGGACCCGGCTGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
16938407 GGCTGAGCGTCCGCACGTTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCAAGTCTAA
130 GGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16938472 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGG-TT-GCACATGCTGGGCTCG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTAGCACATGCTGGGCTCG
* * * *
16938535 GGCATGTGCTGCTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCAGAGAACCT
259 GGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCT
* * *
16938600 GATCGGTGACATTGGGGTTCCGGCGATCGGAGGGGCCGACGGGGGTGTGCGCACATGATGTGCGA
324 GACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGA-GGGGGTGTGCGCACATGATGTGCGA
16938665 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
387 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
16938730 CTCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGG
452 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
16938795 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTTTTG
517 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT-TTTTTTG
* * *
16938860 CATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTTCTTCCGAAAAAAT
580 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
16938924 TTCAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
645 TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
16938989 CATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATT
710 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
16939054 GGCTCATAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCAAGGCTTGCGCA
775 GG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
16939119 TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCG-TCGGCTCGCTCGTTTCGTGG
838 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTC-CGCTCGTTTCGTCG
16939172 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGG-T-TG-CAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
*
16939234 AACAGGATCGACAGCACACAGAGGGGGACCTGG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
66 ---AGGATCGACAGCACACAGAGGGGGACCCGGCT-GAT-CCCGGCTTGCGCATCCCGCCCCTCT
* * * *
16939298 AGCTGGCTGAGCAGCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
126 GGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
16939363 CTCAGCATACGGAGTTCATTCCCAGTCTAAG--CTG---GG-CTC-A--G--T----CATG-T--
190 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CGAGGGTTTAGCACATGCTGG
** * *
16939410 GCT--GG--TGT-C--GT-----ATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCA-CTAGA
254 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATC-GGA
* * * *
16939462 GAACCTGACCGACGGCATT-GGGTTCTGGCGATCGGGGGGGCC-ACGGGGTGTGCACACATGATG
318 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATG
* * *
16939525 TGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTC
382 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16939590 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTCAA
447 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16939655 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATTTTTT
512 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * *
16939720 TTTGCATGCCAACAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCCG-A
576 TTTGCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
16939783 AAAATTTTAAAAAATCTTGAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
640 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
16939848 CTTGCCATGAAACTTCACGA-GAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
705 CTTGCCATGAAACTTCAC-ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
16939912 GGAATTGGTAAGTAGAAATATGAATATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCT
769 GGCATTGG-CA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
16939977 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-T----T-GTTTCGTCG
832 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCG
* * * * **
16940028 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGG-T-TG-C---
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
*
16940087 --G---G-CAGCACACAGAGGGGGACCCGG-TCGATCCTCGACTTGCGCATCCCGCCCCTCTGGC
66 AGGATCGACAGCACACAGAGGGGGACCCGGCT-GATCC-CGGCTTGCGCATCCCGCCCCTCTGGC
* ** * * *
16940145 CGGCTGAGAGACCGCACGCTCACTTCATGGGTTCACTTAGGCATACGGAGTTTATTCCCAGTCTA
129 CGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16940210 AGCATACGAAGTTCTTTCCCAGTCTGAGATCAGACCGGACTGAGGGTTTCGACAGCACATGCTAG
193 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTT----AGCACATGCTGG
* * *** * * *
16940275 GCTTGGGCATGTCCTGGTGTTGCATTTTTCTTCGTCAGGGCACCATCGCCAGGA-CATCATCGGA
254 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCATCGGA
** * * ** * * *
16940339 GAACCTGACCGGCAACATTGGGGTTCAGGTGATCGGGGGGAATGGGGGGGTGTGCACACATGAGG
318 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCGAGGGGGTGTGCGCACATGATG
* * *
16940404 TGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTC
382 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16940469 ACACCCCCTAAAATAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAA
447 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16940534 ATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
512 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
16940599 TGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCC-AA
576 TTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAA
* * ** *
16940662 AAAAGTTTTAAAAAAT-CTCGATCCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTG
640 AAAA-TTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
16940726 GTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
703 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16940791 TGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGC
768 TGGCATTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
16940856 TTGTGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCACCCGCCCGCTCGTTTCATCG
831 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCG
* * * * * **
16940916 GTTGGCTTAGGCCTACGGAGTTCATTGCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
* * * * * *
16940981 AGGATCGACAGCATACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCGCTCTGGCT
66 AGGATCGACAGCACACAGAGGGGGACCCGGCTGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
16941046 GGCTGAGCGCCCACACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 GGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16941111 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGTGGCAGCACATGCTGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT-T---AGCACATGCTGG
* *
16941175 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCGTCGTCGGAGCATCATCGGAG
254 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * *** *
16941240 AACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGTTACTAGGGGGTGTGCGCACATGATGTG
319 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
*
16941305 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT-GAAGAACTCA
384 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCA
** * * *
16941369 TGCCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCCGTTAAAGTGTCTGAAA
448 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16941434 TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAACTTTTTT
513 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * * * * * *
16941499 GTGCACGCCAAAAAAAATACAGGGATCATGTCTGCCAAGTTTGGGTCCAAAACTCCTTTCGAAGA
577 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
16941564 AATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTC
642 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-
* * *
16941628 CTTGCCATGAAACTTCACGTGAACGGCTTAAGGGACCCATTGTATGAATTAACAAACC-TAAAGA
705 CTTGCCATGAAACTTCACATGAA-GGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAA-A
*
16941692 ATGGCA-TGGCACGTAGAAAATAT-AAGATGTGCCCTAAACCCACCTACCACCC-ATCGAGTGCA
767 ATGGCATTGGCA--TAG-AAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGA-TCCA
* * * *
16941754 CGGCTTTGCGCATCCTGTC-CTCTGGCCCGGCGTCGTGCCCG-CCGCCCG-CC-CTCGTGTCGTC
827 CGGC-TTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTC
16941815 G
890 G
* * * *
16941816 ATTGGCTTAGGCATACGGAGTTCATTCCTA-TATGAAGATCAGATCCGGA-TCGAGGGTTG-CAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGAT-CGGACT-GAGGGTTGTGA-
* * * * * * * * *
16941878 CTGTATGAACGACAACACGCAGAGGGGAACCCTGTTCGAATCCCTGACTTGC-CA-CCCTGCCGC
62 CAGTAGGATCGACAGCACACAGAGGGGGACCCGGCT-G-ATCCC-GGCTTGCGCATCCC-GCC-C
** *
16941941 CTCT-GCCAACTGACCGCTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAG-TCATTC
122 CTCTGGCCGGCTGA--GCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * **
16942003 CCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCTGTAGCA
185 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T--T-TAGCA
16942068 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCAT
246 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCAT
* * **
16942133 CA-CTGGAGAACCTAACCGACGGCATTGGGGTTCCAACGATCGGGGGGCCG-GGGGGTGTGCGCA
311 CATC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCA
* * * *
16942196 CATGATGTGCAATGGGTGCTGGTACTTTGCCCTTATATCGGCCCCTTATCCCTCATCAAACCTCG
375 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
16942261 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGT
440 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
16942326 GTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
505 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * **
16942391 ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAACGA
570 A-TTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTC
* * * *
16942456 TTTCTGAAAAAATTTTCAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAA
632 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * *
16942521 CGAGCCGTCTTGCCATGAAACTTAACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCA
697 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
16942586 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATC
762 TAAAAATGGCATTGG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
16942651 CAAGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----GCTCGCCCGTCCTCTCGTTTCGTC
825 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTC
16942712 G
890 G
* * * *
16942713 GTTGGCTTTGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTAT-AGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGA-CAG
* * * * * *
16942777 CAGGATCGATAGCACGCAAAGGGGGACCCAG-TCGATCCCTGGCTTGCGCATCCTGCCCCTCTGG
65 TAGGATCGACAGCACACAGAGGGGGACCCGGCT-GATCCC-GGCTTGCGCATCCCGCCCCTCTGG
* * * * *
16942841 CCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
128 CCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** *
16942906 AAGCATGCGAAGTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTG
192 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT----TAGCACATGCTG
* * * * * ***
16942971 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACCATCGTCGGAGCATCACCATT
253 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGA
* * *
16943036 GAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGGGGGCCG-GAGGGGTGT-CGCACATGAT
318 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAG-GGGGTGTGCGCACATGAT
* * ** *
16943099 GTGCGATGGGTGCTGGTACTTGGGCCTTATAATGGCGTCCTATCCCTCATTAAACCTCGAGAACT
381 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16943164 CACA-CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTGA
446 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16943228 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
511 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
16943293 TGTGCATCCCAATAAAAATACAAGCATCACGTATACCAAGT
576 TTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
16943334 CTTGCCATGA
Statistics
Matches: 4410, Mismatches: 490, Indels: 320
0.84 0.09 0.06
Matches are distributed among these distances:
843 3 0.00
844 128 0.03
845 1 0.00
846 2 0.00
848 1 0.00
849 2 0.00
850 2 0.00
852 1 0.00
854 1 0.00
856 61 0.01
857 1 0.00
862 4 0.00
863 7 0.00
864 258 0.06
865 213 0.05
866 1 0.00
867 22 0.00
868 51 0.01
869 3 0.00
870 1 0.00
872 2 0.00
873 1 0.00
875 1 0.00
876 3 0.00
877 52 0.01
878 22 0.00
879 255 0.06
880 210 0.05
882 2 0.00
883 4 0.00
886 1 0.00
887 2 0.00
888 55 0.01
889 3 0.00
890 4 0.00
892 4 0.00
893 9 0.00
894 252 0.06
895 594 0.13
896 353 0.08
897 131 0.03
898 31 0.01
899 376 0.09
900 590 0.13
901 451 0.10
902 163 0.04
903 71 0.02
904 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGT
AGGATCGACAGCACACAGAGGGGGACCCGGCTGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCG
Found at i:16939377 original size:26 final size:26
Alignment explanation
Indices: 16939341--16939390 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16939331 GTTGACTTAG
*
16939341 GCATATGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
16939367 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16939391 AAGCTGGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:16940222 original size:26 final size:26
Alignment explanation
Indices: 16940185--16940234 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16940175 GTTCACTTAG
*
16940185 GCATACGGAGTT-TATTCCCAGTCTAA
1 GCATACGAAGTTCT-TTCCCAGTCTAA
16940211 GCATACGAAGTTCTTTCCCAGTCT
1 GCATACGAAGTTCTTTCCCAGTCT
16940235 GAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCTTTCCCAGTCTAA
Found at i:16941115 original size:26 final size:26
Alignment explanation
Indices: 16941085--16941137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941075 GTTGACTTAG
16941085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16941111 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16941137 G
1 G
16941138 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16942028 original size:26 final size:24
Alignment explanation
Indices: 16941988--16942038 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
16941978 GTTGACTTAG
*
16941988 GCATACGAGTCATTCCCTGTCTAA
1 GCATACGAGTCATTCCCAGTCTAA
16942012 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAG-TCATTCCCAGTCTAA
16942038 G
1 G
16942039 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 6 0.25
25 3 0.12
26 15 0.62
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
GCATACGAGTCATTCCCAGTCTAA
Found at i:16942349 original size:900 final size:891
Alignment explanation
Indices: 16939393--16943333 Score: 4988
Period size: 900 Copynumber: 4.4 Consensus size: 891
16939383 CCCAGTCTAA
* * * * *
16939393 GCTGGGCTCAGTCATGTGCTGGTGTCGTATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCAC
1 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* * ** *
16939458 TAGAGAACCTGACCGACGGCATT-GGGTTCTGGCGATCGGGGGGGCCACGGGGTGTGCACACATG
66 TGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATG
* *
16939522 ATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAA
130 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAA
* *
16939587 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
195 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
16939652 CAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATTT
260 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * * **
16939717 TTTTTTGCATGCCAACAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCC
324 TTTTGTGCACGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC
* * * *
16939781 G-AAAAATTTTAAAAAATCTTGAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
388 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGC
*
16939845 CGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTAA-AAGCCATAAA
453 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTAACAAGCCATAAA
* * * * * *
16939909 AATGGAATTGGTAAGTAGAAATATGAATATGTGCCTAAACCCACCTACCACACTATCGATCCACG
517 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
16939974 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCTTGTTTCGTCGGTTGGCT
582 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * **
16940035 TAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCG--GC---A--G-
647 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGCTGCAGGATCGA
16940092 C-ACA--CAGAGGGGGACCCGGTCGAT-CCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
712 CAACACGCAGAGGGGGACCC-GTCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** * *
16940153 AGACCGCACGCTCACTTCATGGGTTCACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACG
775 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
16940218 AAGTTCTTTCCCAGTCTGAGATCAGACCGGACTGAGGGTTTCGACAGCACAT
840 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACAT
* * * * * *
16940270 GCTAGGCTTGGGCATGTCCTGGTGTTGCATTTTTCTTCGTCAGGGCACCATCGCCAGGA-CATCA
1 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCA
* ** * * ** *
16940334 -TCGGAGAACCTGACCGGCAACATTGGGGTTCAGGTGATCGGGGGGAATGGGGGGGTGTGCACAC
65 CT-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG--CCGGGGGGTGTGCGCAC
* * *
16940398 ATGAGGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGA
127 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGA
* * *
16940463 GAACTCACACCCCCTAAAATAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTG
192 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16940528 TCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
257 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
16940593 TTGTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATGCC-
322 TT-TTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCT
* * * **
16940656 TTCCAAAAAAGTTTTAAAAAATCTCGATCCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
385 TTCGAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
** * *
16940721 GAGTGGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
449 GAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCAT
* * *
16940786 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCC
514 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
16940851 ACGGCTTGTGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCACCCGCCCGCTCGTTTCATCG
579 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCG
* * * * *
16940916 GTTGGCTTAGGCCTACGGAGTTCATTGCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGT
640 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGCT-GC
* ** * * * * * *
16940981 AGGATCGACAGCATACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCGCTCTGGCT
704 AGGATCGACAACACGCAGAGGGGGACCCG-TCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCC
* *
16941046 GGCTGAGCGCCCACACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
768 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16941111 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGTGGCAGCACAT
833 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACAT
* * *
16941170 GCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCGTCGTCGGAGCATCA-
1 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* * * * ** **
16941234 TCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGTTACTAGGGGGTGTGCGCACAT
66 T-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGGGGTGTGCGCACAT
*
16941299 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT-GAAG
129 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCG-AG
** * * *
16941363 AACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCCGTTAAAGTGT
193 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16941428 CTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAC
258 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * * *
16941493 TTTTTTGTGCACGCCAAAAAAAATACAGGGATCATGTCTGCCAAGTTTGGGTCCAAAACTCCTTT
322 TTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT
* *
16941558 CGAAGAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
387 CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
16941623 CCGTCCTTGCCATGAAACTTCACGTGAACGGCTTAAGGGACCCATTGTATGAATTAACAAACC-T
452 CCGT-CTTGCCATGAAACTTCACGTGAA-GGCTTAAGGGA-CCATTGTATGAATTAACAAGCCAT
*
16941687 AAAGAATGGCA-TGGCACGTAGAAAATAT-AAGATGTGCCCTAAACCCACCTACCACCC-ATCGA
514 AAA-AATGGCATTGGCACGCAG-AAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGA
* * * * *
16941749 GTGCACGGCTTTGCGCATCCTGTC-CTCTGGCCCGGCGTCGTGCCCG-CCGCCCGCCCTCGTGTC
576 -TCCACGGC-TTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCG--CTCGTTTC
* * *
16941812 GTCGATTGGCTTAGGCATACGGAGTTCATTCCTA-TATGAAGATCAGATCCGGA-TCGAGGGTTG
636 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGA-CCGGACT-GAGGGTTG
* * * *
16941875 CAGCTGTATGAACGACAACACGCAGAGGGGAACCCTGTTCGAATCCCTGACTTGC-CA-CCCTGC
698 C-GCTGCAGGATCGACAACACGCAGAGGGGGACCC-G-TCG-ATCCCTGACTTGCGCATCCC-GC
** * *
16941938 CGCCTCT-GCCAACTGACCGCTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAG-TCA
758 C-CCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * ***
16942000 TTCCCTGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCTG-
821 TTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GA
*
16942063 TAGCACAT
884 CAGCACAT
* * *
16942071 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCAC
1 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* **
16942136 TGGAGAACCTAACCGACGGCATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
66 TGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
16942201 TGTGCAATGGGTGCTGGTACTTTGCCCTTATATCGGCCCCTTATCCCTCATCAAACCTCGAGAAC
131 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAAC
* *
16942266 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTG
196 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16942331 AAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
261 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * * *
16942396 TTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAACGATTTCT
325 TTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC-CTTTC-
* *
16942461 GAAAAAATTTTCAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAG
388 GAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
16942525 CCGTCTTGCCATGAAACTTAACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
452 CCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAA
* * *
16942590 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCAAG
517 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
16942655 GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGCCCGTCCTCTCGTTTCGTCGGTTGGCT
582 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** *
16942720 TTGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATAGCAGCAGGATCG
647 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-GCGCTGCAGGATCG
* * * * *
16942785 ATAGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
711 ACAACACGCAGAGGGGGACCC-GTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
16942850 CGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATGCG
775 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16942915 AAGTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACAT
840 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACAT
* * *
16942967 GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACCATCGTCGGAGCATCAC
1 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
**** * *
16943032 CATTGAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGGGGGCCGGAGGGGTGT-CGCACAT
66 TGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGG-GGGGTGTGCGCACAT
* * * *
16943096 GATGTGCGATGGGTGCTGGTACTTGGGCCTTATAATGGCGTCC-TATCCCTCATTAAACCTCGAG
129 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCGTATCCCTCATCAAACCTCGAG
* * *
16943160 AACTCACA-CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGC
193 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
16943224 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
258 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
16943289 TTTTTGTGCATC-CCAATAAAAATACAAGCATCACGTATACCAAGT
323 TTTTTGTGCA-CGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
16943334 CTTGCCATGA
Statistics
Matches: 2661, Mismatches: 315, Indels: 158
0.85 0.10 0.05
Matches are distributed among these distances:
876 1 0.00
877 73 0.03
878 23 0.01
879 249 0.09
880 200 0.08
884 1 0.00
888 70 0.03
891 1 0.00
894 50 0.02
895 61 0.02
896 303 0.11
897 128 0.05
898 46 0.02
899 373 0.14
900 594 0.22
901 265 0.10
902 152 0.06
903 71 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
TGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAA
AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGCTGCAGGATCGACAAC
ACGCAGAGGGGGACCCGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACAT
Found at i:16943727 original size:26 final size:26
Alignment explanation
Indices: 16943691--16943743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943681 GTTGACTTAG
*
16943691 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16943717 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16943743 G
1 G
16943744 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16944080 original size:809 final size:806
Alignment explanation
Indices: 16942527--16944142 Score: 2322
Period size: 809 Copynumber: 2.0 Consensus size: 806
16942517 AAAACGAGCC
*
16942527 GTCTTGCCATGAAACTTAACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16942592 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCAAGGC
66 TGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCAACCTACCACCCTATCGATACAAGGC
* * * * * * *
16942657 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGCCCGTCCTCTCGTTTCGTCGGTTGGCTTT
131 TTGCGCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTA
* * * *
16942722 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATAGCAGCAGGATCGAT
196 GGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACGGAGGGTTACAGCAGCAGGATCGAT
* * *
16942787 AGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
261 AGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCG
* * ** * *
16942852 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATGCGAA
326 CCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGAA
*
16942917 GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCAT
391 GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTAGGCTCGAGCAT
** * * ** * **
16942982 GTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACCATCGTCGGAGCATCACCATTGAACCTGACCG
456 GTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCAGAGAACCTGACCG
* * * *
16943047 ACAGCATTGGGGTTTCGGCGATCGGGGGGGCCGGAGGGGTGTCGCACATGATGTGCGATGGGTGC
521 ACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGTCGCACATGATGTGCGATGGGCGC
* ** *
16943112 TGGTACTTGGGCCTTATAATGGCGTCCTATCCCTCATTAAACCTCGAGAACTCACACCCCTTAAA
586 TGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
* *
16943177 GTGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTGAAATGGGGACACTTT
651 GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTAAAATGGGGACACTTT
*
16943242 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATCCCAAT
716 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAC
16943306 AAAAATACAAGCATCACGTATACCAA
781 AAAAATACAAGCATCACGTATACCAA
* * *
16943332 GTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAA
1 GTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
16943397 TGGCATTGGCAGACAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATTGATACACGGC
66 TGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCAACCTACCACCCTATCGATACAAGGC
*
16943462 TTGCGCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCACTCGTTTTGTCAGTTGG
131 TTGCGCATCCCGTCACTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCACTCGTTTCGTCAGTTGG
* * *
16943527 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACGGAGGGTTACGGTAGCAGGAT
192 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACGGAGGGTTACAGCAGCAGGAT
* * ** * * *
16943592 TGGTAGCACGCAGCGGGGGACCCGGTCGATCCTTGGCTTGCACATCCCGCCTCTCTGGCCAGCTG
257 CGATAGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGCTG
* *
16943657 AGCGCCCACACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTCTAAGCAT
322 AGCGCCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCT-AGTCTAAGCAT
* * * ** *** * ** *
16943721 ATGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGTGGCAGCACATGCTAGGCTCG
386 ACGAAGTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTAGGCTCG
* * *
16943786 GGCATGTGCTGGTGCCAAATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCATCAGAGAACCT
451 AGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCAGAGAACCT
* * *
16943851 GACCGGCGGCATTGGGGTTCCGACAATC-GGGGGGCCGG-GGGGTGTGTGCACATGATGTGCGAT
516 GACCGACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGT-CGCACATGATGTGCGAT
* *
16943914 TGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
580 GGGCGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
* * *
16943979 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCTATTAAAGTGTCTAAAATGGGG
644 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTAAAATGGGG
*
16944044 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
709 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
16944109 TGCCAACAAAAATACAAGGATCACGTCTACCAA
774 TCCCAACAAAAATACAAGCATCACGTATACCAA
16944142 G
1 G
16944143 CATGGGGCCA
Statistics
Matches: 712, Mismatches: 91, Indels: 11
0.87 0.11 0.01
Matches are distributed among these distances:
805 150 0.21
807 8 0.01
808 84 0.12
809 429 0.60
810 41 0.06
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (806 bp):
GTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACACAGAAATATGAAGAAGTGCCTAAACCAACCTACCACCCTATCGATACAAGGC
TTGCGCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTA
GGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACGGAGGGTTACAGCAGCAGGATCGAT
AGCACGCAAAGGGGGACCCAGTCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCG
CCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGAA
GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCTAGGCTCGAGCAT
GTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCAGAGAACCTGACCG
ACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGTGTCGCACATGATGTGCGATGGGCGC
TGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAC
AAAAATACAAGCATCACGTATACCAA
Found at i:16946008 original size:888 final size:892
Alignment explanation
Indices: 16943336--16948004 Score: 5859
Period size: 888 Copynumber: 5.2 Consensus size: 892
16943326 TACCAAGTCT
* *
16943336 TGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
1 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16943401 ATTGGCA-GACAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATTGATACACGGCTTG
66 ATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
16943465 CGCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCACTCGTTTTGTCAGTTGGCTT
130 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-CC-CTCGTTTCATCGGTTGGCTT
* * * * * *
16943530 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACGGAGGGTTACGGTAGCAGGATTGG
193 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGG
* * * * * ** * *
16943595 TAGCACGCAGCGGGGGACCCGGTCGATCCTTGGCTTGCACATCCCGCCTCTCTGGCCAGCTGAGC
258 TAGCACACAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCAGCTGAGC
* * * *
16943660 GCCCACACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGG
323 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
16943725 AGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
388 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
** * * *
16943790 TGTGCTGGTGCCAAATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCATCAGAGAACCTGACC
453 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAT--T--G-GAACCTGACC
* * * * * *
16943855 GGCGGCATTGGGGTTCCGACAATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATTGGCG
513 GACGGCATT-GGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
16943919 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
577 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
16943984 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCTATTAAAGTGTCTAAAATGGGGACACT
642 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
16944049 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
707 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
**
16944114 ACAAAAATACAAGGATCACGTCTACCAAGCATGGGGCCAAAAATCCTT-TCG-AAAAAATTTTAA
772 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAAATTTTAA
* * * * * *
16944177 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
836 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCA
*
16944234 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
16944299 ATTGCCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTGC
66 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16944364 GTATCCCGACTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
131 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-CC-CTCGTTTCATCGGTTGGCTTA
* * * *
16944429 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC-GAACTGAGGGTTGCGGTAGCAGGATCAG
194 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGATAGTAGGATCGG
* * * * * * * * * * *
16944493 CAGCACGCAGCGGAGGACCCGACCAATCCTCGGCTTGCGCAACCCGCCCCTCTGGCCGGCTGAGC
258 TAGCACACAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCAGCTGAGC
* * * *
16944558 GCCTGCACACTCATTTCGTGCGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAG-AT-C-G
323 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
16944620 -G---------A--C---G---GGA-T----CGAGGGTTGCGGCAGCACATGCTGGGGTCATGCA
388 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
* ** * * *
16944662 TGTGCTGGTGTCGCATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGTCGTTGAACTTGATC
453 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAT--T-G--GAACCTGACC
* * *
16944727 GACGGCATTGGGGTTCCGACGATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGTGATGGGTG
513 GACGGCATT-GGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
16944791 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
577 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * **
16944856 AAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACTTT
642 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * ** * * *
16944921 TTTTTCAAATTGTCATAATTTCTTGTACACTTCGAGTTTTTAGATGAATTGTTTTGTGCACGCCA
707 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
16944986 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTT-TCGAAAAAAATTTTAA
772 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAAATTTTAA
* * * *
16945050 AAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGATAAATAGAAAACGAGTCATCT
836 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCA
*
16945107 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16945172 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCGACCTACTACCTTATCGATCCACGGCTTGC
66 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16945237 GCATCCCGTCTCTCTGGCCGG-AGTAGTACCCGCCCGCCCGTCCACTCATTTCGTCGGTAGGCTT
131 GCATCCCGTCTCTCTGGCCGGCA-TAGTGCCCGCCCGCCCG-CC-CTCGTTTCATCGGTTGGCTT
* * *
16945301 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTCCGACAGTAGGATCGA
193 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGG
* * * * * * *
16945366 CAGCACCCAGCGGGGGACCCGATCGTTCCTCGACTTGTGCATCCCACCCTTCTGGCCGGTTGAGC
258 TAGCACACAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCAGCTGAGC
* * * * *
16945431 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAATCTAAGCATATTG
323 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CG
* * *
16945496 G-GTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCTGCACATGCTGGGCTTAGGC
387 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * **
16945560 ATGTGCTGGTGCCACATTTTTCTTTGCCGGGTTACCATCG-C-G-G-A-T-GAACCTGACCGACG
452 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATTGGAACCTGACCGACG
* * * * * * *
16945619 GTATTGGGGTTTCGACGATCGGCGGGCC-GGGGGGTGGGCGCACATGATGTACAATTGGTGCTAG
517 GCATT-GGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
16945683 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
581 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
16945748 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTT
646 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
16945813 TCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAA
711 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
16945878 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAGAAAT
776 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTTAAAAAAT
* * * * *
16945942 CCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
841 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCA
*
16945994 TGCCATGAAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16946059 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTT
65 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16946124 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCTCATCGGCCCGCTCGTTTTATCGGTTG
130 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC-C--C-G-CC-CTCGTTTCATCGGTTG
* ** * * *
16946189 GCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGA-TCAAGGGTTGCGGTAGCAGG
189 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGATAGTAGG
* * ** * ** * * *
16946253 ATTGGTAGCACACAGAGGGGGACCTGGCCAATCCTCGGTTTGCGCATCCCGCCCCTCTGGCCTGC
253 ATCGGTAGCACACAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCAGC
* * * * * *
16946318 TAAGTGCCCGCATGCTCATTCCGTGGTTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
318 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
16946383 TACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGGCCGAGGGTTGCGGCAGCACGTGCTGGGCT
383 TACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
16946447 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
447 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAT--T--G-GAAC
* * *
16946512 CTAACCGGCGGCATTGGGTTTCCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGCG
507 CTGACCGACGGCATTGGGTTT-CGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
16946577 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACAC
570 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
16946642 CCCCATAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
635 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
16946707 GGACACTTTTTTCAAATAGTTACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGAG
700 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
16946772 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC-GAAAAAAA
765 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAA
* * * *
16946836 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACAATTCGTCA
830 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCA
** *
16946899 TGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGC
1 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16946964 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
66 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
16947029 GCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCCG--CTCGTTTCATCGGTTGGCTTAGG
131 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCTCGTTTCATCGGTTGGCTTAGG
* * * * *
16947092 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGCCAGAGGGTTGTGATAGTAGGATCGGTAG
196 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGGTAG
* * * *
16947157 CACGCAGAGGGGGACCCGATCGATCCCCAACTTCGT--ATCTCACCCCTCTGGCCAGCTGAGCGC
261 CACACAGAGGGGGACCCGATCGATCCTCGACTT-GTGCATCCCACCCCTCTGGCCAGCTGAGCGC
* * * * *
16947220 CCTCACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAG
325 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
16947285 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGGCT-AGAGCAT
390 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCAT
* * * ** * *
16947349 GTGCTGGTGGCGTATTTTT-TTCGTCGGGGCACCATCATCGAAGCATCATCGGAGAACTTGACC-
454 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAT--T--G-GAACCTGACCG
* *
16947412 AGCGGCATTAGG-TTCTGACGATCGGGGGGCCTGGGGGGGTGTGCGCACATGATGTGCGATGCGT
514 A-CGGCATTGGGTTTC-GACGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
16947476 ACCGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
576 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
16947540 AAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
641 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
16947605 TTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTTAATTTTTTTGTGCAAGCC
706 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
16947670 AA-AAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCAAAAATCCTTC-AAAAAAAATTTTAA
771 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTTAA
* * * * * *
16947733 AAAAACCTGAACCGTAAAAAGTTAT-GAAAATCGTGAAAAATAGAAAACAAGCCGTCA
836 AAAATCCCGAACCGTAAAAAGTT-TCAAAAATCATGAAAAATAGAAAACAAGTCATCA
*
16947790 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-ATTGAATTTACAAGCCAAAAAAATGG
1 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGG
* * * * *
16947854 CAGTGGCCCGTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTG
65 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * ** * * *
16947919 CGCATCTCACCCCTCTGGCCGGC-T-GAG--CGCCCTCATG--CTCGTTTCGTTGGTTGACTTAG
130 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCTCGTTTCATCGGTTGGCTTAG
*
16947978 GCATACGGAGTTCGTTCCCAGTCTAAG
195 GCATACGGAGTTCATTCCCAGTCTAAG
16948005 CATACGGAAT
Statistics
Matches: 3310, Mismatches: 393, Indels: 147
0.86 0.10 0.04
Matches are distributed among these distances:
871 2 0.00
872 363 0.11
873 398 0.12
874 3 0.00
876 1 0.00
877 5 0.00
880 1 0.00
883 1 0.00
885 1 0.00
886 1 0.00
887 122 0.04
888 436 0.13
889 5 0.00
890 2 0.00
891 247 0.07
892 400 0.12
893 94 0.03
894 51 0.02
895 153 0.05
896 101 0.03
897 5 0.00
898 339 0.10
899 66 0.02
900 1 0.00
901 1 0.00
902 6 0.00
903 25 0.01
904 158 0.05
905 322 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCTCGTTTCATCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCGGTAG
CACACAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCAGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGT
GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATTGGAACCTGACCGACGGCAT
TGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCA
Found at i:16946383 original size:26 final size:26
Alignment explanation
Indices: 16946354--16946406 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946344 TTTGACTTAG
*
16946354 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16946380 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16946406 G
1 G
16946407 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16947278 original size:26 final size:26
Alignment explanation
Indices: 16947249--16947301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16947239 GTTGACTTAG
*
16947249 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16947275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16947301 G
1 G
16947302 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16948009 original size:26 final size:26
Alignment explanation
Indices: 16947978--16948030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16947968 GTTGACTTAG
* *
16947978 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16948004 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16948030 G
1 G
16948031 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Done.