Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 88 of 117
Found at i:17100600 original size:27 final size:26
Alignment explanation
Indices: 17100522--17100601 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
17100512 GTTGACTTAG
*
17100522 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17100548 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17100574 GCATTACGGAGTTCATTCCCAATCTAA
1 GCA-TACGGAGTTCATTCCCAGTCTAA
17100601 G
1 G
17100602 ATTGGACCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 27 0.55
27 22 0.45
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17101371 original size:26 final size:26
Alignment explanation
Indices: 17101342--17101394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17101332 GTTGACTTAG
17101342 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17101368 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17101394 G
1 G
17101395 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17103719 original size:900 final size:897
Alignment explanation
Indices: 17101866--17106828 Score: 6509
Period size: 900 Copynumber: 5.6 Consensus size: 897
17101856 AAAAATAGAA
** ** * * * *
17101866 ATCGAGGGTTACGGCAGCAGGATCGGTATCACGTAGAAGGGGACCCGATCGATCCACGGCTTGCG
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * * *
17101931 CATCACGCCCCTCTGGCTGGCTGAGCGACCGTACACTCGTTGCGTGGGTTTGACTTAGGCATA-A
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATACA
* * ** *
17101995 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCAGACCAGACTGAGGG
130 -GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACTGGACCGAGGG
* * * *
17102060 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGGCACCA
193 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCA
17102125 ---TC--A-C-T----GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGG
257 TCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGG
* * * *
17102179 GGGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCTCCTATCCTTC
322 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTC
* * *
17102244 ATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCTTTTGAGAGTTTACAGGTTTGCTGCCAGTA
387 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
17102309 GCCATTAAAGTGTCTAAAATGGGGACAATTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAG
452 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* **
17102374 TTTTCAGCTGCTTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
517 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG
* * * * *
17102439 CCAAAACTCGTTCCGAAAAAATTTTACAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAAA
581 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * * **
17102504 AATAGAAAAGGAGTCGTCTTGCCATGAGACTTCAGGTGAAGGCTTAAGGGAGAATTGTATGAATT
646 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
17102569 TACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
711 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
17102634 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACT-TAGTGCCCGCCCGCCCGCCCAC
776 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGTGTAGTGCCCGCCCGCCCGCCCGC
* * * * *
17102698 TTGTTTCGTTGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGACTGG
840 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * *
17102756 ATTGAGGGTTGTGGCAACAGCATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * * *
17102821 TATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATAA
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* *
17102886 AGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCTAACTGGACCGAGGATT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACTGGACCGAGGGTT
* * * **
17102951 ACGGTAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
195 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* * * * * * * *
17103016 CCAGAGCATCGTCGGAGAACCTGATCGACGGCATTGGTGTTCTGGCGATCGGAGGGGCCGGAGGG
260 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGG-GGG
* * * *
17103081 GCTGTGCGTACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCA
324 G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCA
17103146 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
388 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
17103211 CAATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
453 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
17103276 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGCC
518 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
* * **
17103341 AAAAATCCTTTCGAAAAAATTTTAAAAAAT-CTCGAACTGCAAAAAGTTTTGAAAATCATGAAAA
583 AAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAA
17103405 ATA-AAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
647 ATAGAA-AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** ** *
17103469 TACAAGTTATAAAAATTCCATTGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACC
711 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
17103534 CTATTGATACACGGCTTGCGCATCCCGTCTCTCTGGCTAGTGAAGTGCCCGCCCGTCCGCCCGCT
776 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCGCT
* * *
17103599 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCAGACCGG
841 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * *
17103656 ATCGAGGGTTGTGGCAGCAGGATCAACAGCACGCAAAGGGGGACCCGATTGATCCCTGGCTTGCA
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * *
17103721 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGAGGGTTGACTTAGGCATAC-G
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * *
17103785 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTCAA-TGGGACTGATGG
131 -AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACT-GGACCGAGGG
* * * * *
17103849 TTGCGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCC-CTTTTTTTCTTCACTGGGGCACCA
193 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCACCGGGGCACCA
* * * * * * ** *
17103913 TCGTCGGAGCATCGCCGAAGAATCGGATCGGTGGCATTGGGGTTCCGACGATCGAAGGGGTCGGG
257 TCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGG
17103978 GGTCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCC
322 GG--GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCC
* *
17104043 TCATCAAACATCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
385 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
17104107 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC
450 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTC
* *
17104172 -AGTTTTTAG-TAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTT
514 GAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTT
*
17104235 TGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAA-TTTCAAAAATCAT
577 TGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
*
17104299 GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
642 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
17104364 AATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTAC
707 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
17104429 CACCCTATCGATCCACGACTTGCGCA-CCTCGTCTCTCTGGCC---G--GCG-CAG--TGCCCGC
772 CACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGC
* *
17104485 CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCGG
836 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * * *
17104547 ACCGAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGG-CTCGGTCGATCCTCGGCTTGTG
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * *
17104611 CATCCCACCCCTCTGGCCGACTCAACGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* *
17104675 CAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAATGGACCGAGGGT
131 -AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACTGGACCGAGGGT
* * * *
17104740 TGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTGTTCACCGGGGCACCATC
194 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* * *
17104805 GTCGGAGCATCACCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
259 GTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGG
* * * *
17104870 GTGTGCGCACAAGATGTGGGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
324 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCAT
* * * **
17104935 TAAA-CTCGACAACTCACACCCCCTTGAAGAGCATTTGAGATGCTACAGGTTTGCTGCCAGTAGC
389 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
17104999 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTT
454 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
17105064 TTTTGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATC-C-TCTACCAAGTTCAGGGCC
519 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGCC
* * *
17105127 AAAACTCC-TTCTGAAAAAATTTTAAGAAATCCTGAACC-AAAAAAGTTTCGAAAATCATGAAAA
583 AAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
17105190 ATAGAAAACGAGTCGTCTAGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
647 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* **
17105255 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTGTCACCC
712 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** * * *
17105320 TATCGATCCATGGCGTGCGCATCCCGTCTCTCT-AACTGACGTAGTGCCCACCCGCCCGCCCGCT
777 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-TGTAGTGCCCGCCCGCCCGCCCGCT
* * *
17105384 TGTTTCATCGGTTCGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGG
841 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * ** *
17105440 ACCGAGGGTTGTGGCAGCA-GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCA
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * *
17105504 CATCTCGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACATAGGCATACAG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* *
17105569 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGA-TCGGACCGAGGGT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AACT-GGACCGAGGGT
* *
17105633 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGCACCATC
194 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* *
17105698 GTTGGAGCATCGCCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTT-TCGACGATCGG
259 ------G--T---CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATCGG
* **
17105762 GGGGGCCGAGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGAA
312 GGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
17105827 CGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
375 CGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
17105892 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCGA-AAAATCT
440 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCT
* * *
17105956 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAATGTACAAGGATGACGTC
504 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTC
* * * *
17106020 TACCAAGTTTGGGACCAAAAATCC-TTCCAATAAAATTTAAAAAAAT-CTCGAACCGTAAAAAGT
568 TACCAAGTTTGGG-CCAAAACTCCTTTCGAA-AAAATTTTAAAAAATCCT-GAACCGCAAAAAGT
* * *
17106083 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAACGCTTAAGG
630 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* ***
17106148 GACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
695 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
17106213 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGT---
760 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCC
* * *
17106275 -GCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGAT
825 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
17106339 TGCACCGG
890 CGGACCGG
* *** * * * * * *
17106347 ATAGAGGGTTACAGCAACAGGATCGCCAGCACGTAGAGGGGCACCCGACCGATCCCCGACTTGCG
1 ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * *
17106412 CATCCCGCCCCTTTGGCCGGCTGAGCACCCAG-ACGGTTGTTTCGTGGGTTGACTTAGGCATACG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
17106476 GAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GA-C--C---A---AGGGTT
130 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACTGGACCGAGGGTT
* * * * *
17106516 ACGGCAGCACTTGCTAGGCTTGGGCATGTGCTGGTGCTGCAATTTTCTTCACCGGGGCACCATCG
195 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* * * * *
17106581 TCGAAGCATCACCGGAGAACTTGACCGGCGACATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGG
260 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGG
*
17106645 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATC
* * *
17106710 AAACCTCGAGAACTCGCACCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
390 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17106775 ATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTAC
455 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
17106829 GCTTGTGCAT
Statistics
Matches: 3603, Mismatches: 387, Indels: 188
0.86 0.09 0.04
Matches are distributed among these distances:
867 1 0.00
868 173 0.05
869 3 0.00
870 9 0.00
871 40 0.01
872 1 0.00
874 1 0.00
876 1 0.00
882 65 0.02
885 12 0.00
886 210 0.06
887 17 0.00
888 212 0.06
889 123 0.03
890 329 0.09
891 104 0.03
892 24 0.01
893 234 0.06
894 46 0.01
895 1 0.00
896 1 0.00
897 1 0.00
898 5 0.00
899 374 0.10
900 679 0.19
901 240 0.07
904 54 0.01
905 4 0.00
906 115 0.03
907 182 0.05
908 121 0.03
909 42 0.01
910 177 0.05
911 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
ATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACTGGACCGAGGGTTA
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAA
ACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
Found at i:17103815 original size:26 final size:26
Alignment explanation
Indices: 17103778--17103830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17103768 GTTGACTTAG
17103778 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17103804 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17103830 G
1 G
17103831 ATTCAATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17104697 original size:26 final size:26
Alignment explanation
Indices: 17104668--17104720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17104658 GTTGACTTAG
*
17104668 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
*
17104694 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
17104720 G
1 G
17104721 ATCAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAATCTAA
Found at i:17105597 original size:26 final size:26
Alignment explanation
Indices: 17105561--17105611 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17105551 GTTGACATAG
17105561 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17105587 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
17105612 GGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17107084 original size:26 final size:26
Alignment explanation
Indices: 17107048--17107100 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17107038 GTTGACTTAG
*
17107048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17107074 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17107100 G
1 G
17107101 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17111035 original size:26 final size:26
Alignment explanation
Indices: 17110999--17111051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17110989 CTGGTTCGAT
*
17110999 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17111025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17111051 C
1 C
17111052 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17112516 original size:26 final size:26
Alignment explanation
Indices: 17112487--17112537 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17112477 GATCCGATCC
17112487 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
17112513 TAGATTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17112538 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17113414 original size:26 final size:26
Alignment explanation
Indices: 17113378--17113430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17113368 CCATTCTGAT
*
17113378 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17113404 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17113430 C
1 C
17113431 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17114307 original size:26 final size:26
Alignment explanation
Indices: 17114269--17114321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17114259 CCCATTGAAT
17114269 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17114295 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17114321 C
1 C
17114322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17114734 original size:900 final size:898
Alignment explanation
Indices: 17111270--17116232 Score: 6486
Period size: 900 Copynumber: 5.6 Consensus size: 898
17111260 ATGCACAAGC
* *
17111270 GTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17111335 GCAAACCTATAAAATCTCAAATGCTCTTTCAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATA
66 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
17111400 GGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
131 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
17111464 CCCCGATCG-CCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTTCGATGATGGTGCC
196 CCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * * * * *
17111528 CCGGTGAAGAAAATTGTGGCACCAGCACATGCCCAAGCCTAGCAAGTGCTGTCG-----T-A-AC
261 CCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCAGTC
* *
17111586 CC-T-TGGTC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
326 CCATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
* * * * *
17111633 AGTCAACCCACGAAACAACCGT-CTGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGG
391 AGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * *** * * *
17111697 GGATCGGTCGGGTGCCCCTCTACGTGCTGCCGATCCTGTTACTGTAACCCTCTATCCGGTGCAAT
455 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTCCGAT
* *
17111762 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA---ACGGGCGGGCGGGC
520 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGC
* * * *
17111824 ACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
585 ACTTCACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
17111889 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCT
650 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
17111954 TAAGCGTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
715 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * * *
17112019 TTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGTCGAAAACTTGGTAGACGT
780 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGT
* * * *
17112084 CATCCTTGTACATTTT-TTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGT
845 GATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
17112138 GTACAAGATTTT-TCGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
1 GTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
17112202 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
65 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** *
17112267 AGGCGTTCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCTCCCTCGG
130 AGGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGG
*
17112332 CCCCCCCGATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGCT
193 CCCCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTC---CG--G-T-----GATGCT
* ***
17112396 CCAACGATGGTGCCCCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
247 CCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * *
17112461 CCGTAACGCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATG
312 CCGCAAC-CTCAGTCCCATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* ** *
17112526 AAC-TCTGTATGCCTATGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGAGGCG
376 AACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
17112590 AGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGAT-CTGCTGCCACAACCC
440 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * * *
17112654 TCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCGAACCGATGAAACAAGC
505 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-
* * ** * *
17112718 GGGCGGGCGGGTGGGCAC-T-ACGTCAGTTAGAGAGACGGGATGCGCACGCCATGGATCGATAGG
569 GGGCGGGCGGGCGGGCACTTCAC-T-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
** *
17112781 GTGACAGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
632 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
17112846 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCTAGACGACTCGTTTTCTATTT
697 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
17112911 TTCATGATTTTCGAAACTTTTT-CGGTTCGGGATTTCTTAAAATTTTTTC-AGAAGGAGTTTTGG
762 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGG
** * *
17112974 CCCTGAACTTGGTAGA-G-GATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCAAAAAA
826 CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
17113037 CTCGAAGT
891 CTCGAAGT
*
17113045 GTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
** ** * * *
17113110 TTAAACCTGTAGCATCTCAAATGCTCTTCAAGGGGGTGTGAGTTGTCGA-GTTTAATGAGGGATA
66 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
17113174 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCCCACACCTTGTGCGCACACCCCCCGGCCC
131 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
*
17113239 CCCCGATCGTCG-GAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCC
196 CCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * *
17113303 CCGGTGAACAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
261 CCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCAGT
* *
17113368 -CCATTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTGCGTATGCC
325 CCCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
* * * * *
17113432 TAAGTCAACCCACGAAACGAGCGTGCGAGCGTTTAGCCGGCCAGAGGGGTGGGATGCACAAGCCG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
17113497 AGGATCGACCGAG-CCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
454 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTCCGA
* *
17113561 TCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACGA-------GCAGGCGGG
519 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGG
* * *
17113619 CACTGCGCCGGCCAGAGAGACGAGG-TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
584 CACTTCACTGGCCAGAGAGACG-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
17113683 GGCACATCTTCGTATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCC
648 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
17113748 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAA
713 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
17113813 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAAATTGGTAGAC
778 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGAC
* *
17113878 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCTA-CTAAAAACT-GAAAGT
843 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCG-AAGT
17113934 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
17113999 GCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGATGTTTGATGAGGGATA
66 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
17114063 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGACCCCCGAC
131 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCCCCGGC
** * * * *
17114128 CCCTTCGATCGTCGA-AACCCCAATGCCACCGATCCGGTTCTTCGGTGATGCTCCGACGATGGTG
194 CCCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
* * * *
17114192 CCCCAGTGAAGAAAAAAAG-GGCACCAGCACATGCCCGAGCCCAGTATGTGTTGCCGCAACCATC
259 CCCCGGTGAAG-AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TC
*
17114256 AGTCCCAT-TGAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
322 AGTCCCATCTG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
* * *
17114320 GCCTAAGTCAACCCTCAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
386 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * **
17114385 CCAGGGATCAATCGGGTCCCCCTTTGCGTGCTGTTGATCCTGCTGCCACAACCCTCGATCCGGTC
451 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTC
* * * *
17114450 TGATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGACGGG
516 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GGGGCGGGCGGG
* * * *
17114515 CGGGCACTTCACTAGCCAGAGAGACGGGATGCGCAAGCCGTGTATCAATAGGATGGTAGGTGGGT
580 CGGGCACTTCACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** **
17114580 TTAGGCACATCTTCATCTTTCTGCATGCCAATGGAATTTTTATAACTTGTAAATTCATACAATGG
645 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
17114645 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTT-TATTTTTCATGATTTTC
710 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT-TTCTATTTTTCATGATTTTT
* * * * *
17114709 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCC-AAACTTGAT
774 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGT
*
17114773 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGT
839 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
17114833 GTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
17114898 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTA
66 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
17114963 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTACGCGCAGCCCCTCCGGC
131 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGC
* * * * * ** * *
17115028 CCCTCCGATCG-CCAGAACACCAATGCCGTCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTG
194 CCCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
** * * *
17115092 CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAATCCTCG
259 CCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCA
* **
17115157 GT-CCAGT-TAGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTTTATAT
323 GTCCCA-TCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
* * * *
17115220 GCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGATACGCAAG
386 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
17115285 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATGCTGTTGCCACAACCCTCAATCCAGTC
451 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTC
* * * *
17115350 CAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAACAAGTGGGCGGGCGGG
516 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGG
* *
17115415 CGGGCAC-TAAGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
580 CGGGCACTTCACT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
17115479 TTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATT
644 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
17115544 CTCCCTTAAGGCTTCACCTGAAGTCTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTT
709 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
17115609 GAAACTTTTTACGATTC-AGGATTTTGTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACTTGG
774 GAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGG
* *
17115673 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTGAAAACTCGAAGT
838 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17115734 GTACAAGATTTTGTGACCATTTGAAGAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17115799 GCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTTGAGGTTTGATGAGGGATA
66 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
17115864 GGAGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCC
131 GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
*
17115929 CCCCCGATCGT-TAGAACCCCAATGCCGCCGGTCAGGTTCTCC----A-G-T-----GATGGTGC
195 CCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * * *
17115982 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG
260 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCAG
*** * * * *
17116047 TCTGGTCTGATCTTATACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCTTATGCC
324 TCCCATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
* * * * * *
17116112 TAAGTCAACCCACGCAACGAGTGTACGGTCGCTCAGCCAGCCAGAGGGGCGTGATGCGCAAGCCG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * **
17116177 TGGATCGATCGGGTCCCCTTCTACGTGATACCGATCCTGCTGCCGTAACCCTCGAT
454 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGAT
17116233 TTCTATTTTT
Statistics
Matches: 3590, Mismatches: 400, Indels: 189
0.86 0.10 0.05
Matches are distributed among these distances:
867 1 0.00
868 173 0.05
869 3 0.00
870 3 0.00
871 36 0.01
872 2 0.00
874 2 0.00
876 1 0.00
877 1 0.00
882 63 0.02
886 183 0.05
887 53 0.01
888 21 0.01
889 418 0.12
890 8 0.00
891 233 0.06
892 124 0.03
893 235 0.07
894 38 0.01
895 1 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 177 0.05
900 886 0.25
901 246 0.07
903 1 0.00
904 43 0.01
905 3 0.00
906 108 0.03
907 178 0.05
908 110 0.03
909 48 0.01
910 187 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
CCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCAGTC
CCATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGCA
CTTCACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
Found at i:17116109 original size:26 final size:26
Alignment explanation
Indices: 17116058--17116110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17116048 CTGGTCTGAT
* *
17116058 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17116084 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17116110 C
1 C
17116111 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17117530 original size:26 final size:26
Alignment explanation
Indices: 17117494--17117572 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17117484 TCGGTCCAAT
*
17117494 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17117520 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17117546 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17117572 C
1 C
17117573 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17118436 original size:26 final size:26
Alignment explanation
Indices: 17118407--17118459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17118397 CCAGTCCGAT
17118407 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
17118433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17118459 C
1 C
17118460 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17119088 original size:136 final size:136
Alignment explanation
Indices: 17118899--17119184 Score: 410
Period size: 136 Copynumber: 2.1 Consensus size: 136
17118889 GAAGGAGTTT
* ** * * * *
17118899 TGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTGGTTGGTATGCATAAAAAAATTCAGCTAA
1 TGGCACCAAACTTGGTAGACGTGATCCTTCCACTTTGGTCGGTACGAAAAAAAAAATTCAGCTAA
* * * *
17118964 AAACTCTAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAC
66 AAAATCAAACTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAA
17119029 GGCTAC
131 GGCTAC
* * *
17119035 TGGCAGCAAACTTGGTAGACGTGATCCTTCCATTTTTGTCGGTACGAAAAAAAAAATTCAGCTAA
1 TGGCACCAAACTTGGTAGACGTGATCCTTCCACTTTGGTCGGTACGAAAAAAAAAATTCAGCTAA
* * *
17119100 AAAATCAAAGTTTACAAGATTTTTTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAA
66 AAAATCAAACTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAA
17119165 GGCTAC
131 GGCTAC
*
17119171 TGGTACCAAACTTG
1 TGGCACCAAACTTG
17119185 TAAAATCTCA
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
136 131 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (136 bp):
TGGCACCAAACTTGGTAGACGTGATCCTTCCACTTTGGTCGGTACGAAAAAAAAAATTCAGCTAA
AAAATCAAACTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAA
GGCTAC
Found at i:17119482 original size:26 final size:26
Alignment explanation
Indices: 17119446--17119498 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17119436 CCATTTCGAT
17119446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17119472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17119498 C
1 C
17119499 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17121288 original size:25 final size:26
Alignment explanation
Indices: 17121238--17121288 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
17121228 GGTCCAATCT
* **
17121238 TAGATTAGGAATGGAACTCCTTATGC
1 TAGACTAGGAATGGAACTCCACATGC
17121264 TAGACTAGGAAT-GAACTCCACATGC
1 TAGACTAGGAATGGAACTCCACATGC
17121289 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGGAACTCCACATGC
Found at i:17121805 original size:899 final size:896
Alignment explanation
Indices: 17119041--17130506 Score: 14011
Period size: 899 Copynumber: 12.8 Consensus size: 896
17119031 CTACTGGCAG
** * * * * * *
17119041 CAAACTTGGTAGACGTGATCCTTCCATTTTTGTCGGTACGAAAAAAAAAATTCAGCTAAAAAATC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * * *
17119106 AAAGTTTACAAGATTTTTTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * * * *
17119171 TGGTACCAAACTTGTAAAATCTCAAAAGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * * *
17119236 GGATAAGGGGCCAACATAAGGGCCAAGTACCAGCACCAATTGCACATCATGTGCGCACACCCCCT
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* *
17119301 CGGACCCCCCGATCGTCAGAACCCCAATG-TCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGAT
260 CGG-CCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTC-CGTGAT
* * * *
17119365 GGTGCCCCGGTGAAG-AAAAATGCGGCACCAGCACATGCCCGAGCCCATCATGTGCTGCCGTAAC
322 GGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * ** *
17119429 CTTCAGTCCATTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
386 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
17119494 TATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCGCTCAACCGACCAGAGGGGCGTGATGCGC
451 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * *
17119559 AAGCCAGGTATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACTGCAATCGTCAGTCCG
516 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCG
* * * * * **
17119624 GTCTGACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAACGAGTGGGTGGGC
581 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGGACGGGC
* * *
17119689 GGGCGGGCGGGCA-TAACGTCGGCCAGAGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
643 GGGCGGGCGGGCACT-ACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * **
17119753 A-GTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATATCTTGTAAATTCA
706 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
17119817 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
771 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
17119882 GATTTTCAAAACATTTTACGGTTCGGGATTTTTTAACATTTTTTCGGAAGGAGTTTTGGTCC
836 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CC
* * *
17119944 CAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCT-AAAGCTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
17120008 GAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17120073 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCT-TGAGTTCTCAAGGTTTGATGA
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGTTTGATGA
* *
17120137 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTCCGTACACCCAC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CAC
** * *
17120202 CCCCCGGCCCGCCTAATCGTCGGAACCGCAATG-TCGTCGGTCAGGTTCTCCGACGATG----G-
256 CCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCCGT
* * * * * **
17120261 CA----CCCCGGCAAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCAAA
319 GATGGTGCCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
17120321 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTC
384 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
17120386 CATATGCCTAAGTCAACCCTA-GAAATGAGCGCGCGGGCGCTCAGCCCGCCAAAGGGGCGGGATA
449 CGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * *
17120450 CGCAAGCTGGGGATCGAGT-GGGTCCCCCTTTGCGTGCTACTGATCCTGCTACCGCAACCCTCGG
513 CGCAAGCCGGGGATCG-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG
* * * * * *
17120514 TCTGGTCTGATATTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATG-AAATGAGA-GG
577 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACG-GACGG
* * * ** *
17120577 GCGGACAGGCGGGCACTACGTCGTCCAGAGAGACCAGATGCGCAAGCCGTGGGTCGATAGGGTGG
641 GCGGGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
17120642 CAGGTGGGTTTATGCACATCTTCATATTTCTTCGTGCCAATGCCATTTTTATGGTTTGTAAATTC
705 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
17120707 ATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
770 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
17120772 CGATTTTCAAAACTTTTTACGGTTCGGGAGTTTTTAAAATTTTTT-GAGAAAGAGTTTTGGCC
835 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCC
* * *
17120834 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTT
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
17120899 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
17120964 TGGCAGCAAACATGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAA
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
17121029 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
17121094 GGCCCCCCGAT-GCCGAAACCCCAATGCTATCGGTCAGGTTCTCCGGCGATACTCCAGTGATGCT
261 GGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCC-GTGATGGT
* * * * *
17121158 GCCCATGCGAAGAAAAAAAGTGGCA-CAGCA-ATGCCCGAGCCTAGCATGTGTTGTCGCAACCCT
325 GCCC-GGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * * **
17121221 TGGTCCCGGTCCAATCTTAGATTAGGAATGGAACTCCTTATGC-TAGACTAGGAATGAACTCCAC
389 CGGT-CCGGTCCGATCTTAGACTGGGAAT-GAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
17121285 ATGCCTAAGTCAACCCAC-AGAACGAGCCGTGCGGGCGCTCAGCCAGCTAGAAGGGCGGGA-GCG
452 ATGCCTAAGTCAACCCACGA-AACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** * * *
17121348 CAAGCCCGGGGATTTGTCGGGTCCCCCTCTTACGTGCTACCAATCCTGCTGCTGCAA-CCTCAGT
515 CAAG-CCGGGGATCGGTCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGT
* * *
17121412 CCAGTCCTGATCTTAAAATAGGGAATG-ACTCCGGTATGCCTAAGCCAACCGACGAAAACGGACG
578 CCGGT-CTGATCTTAGACT-GGGAATGAACTCC-GTATGCCTAAGCCAACCGACGAAAACGGACG
* ** * * *
17121476 AGCGGGCGATCAGGCACTACGCCGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGAGTGG
640 GGCGGGCGGGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
17121541 TAGGTGGGCTTAGGCAGATGTTCATATTTCTGCATG-CAATGGCATTTTTATGGCTTGTAAATTC
705 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
17121605 ATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCA
770 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
17121670 AGAATTTTCGAAAGTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
835 CG-ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
17121733 CCAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAA-TCAGCTAAAAACT
1 CAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17121797 TGAAGTGTAC-AGA-TTTGTGACCATTTGAAAAAAAGTGTCCCCATATTTAGACACTTTAATGGC
65 CGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGC
* *
17121860 TACTTGGCAGCAAACATGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAAGTTCTCAAGGTTTG
128 TAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCAAGGTTTG
* *
17121925 ATGAAGGATAGGGGGCCAATAT-AGGG-CAAGTACCAAGCACCCATCGCACATCATGTGCACACA
191 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCACATCATGTGCGCACA
* * * * * *
17121988 CCCCCCCGCCCCCTGATCGTCGGAACCCCAAT-ATCGCCAGTCAGGTTCTCCGACGATGCTCCGA
255 CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCCG-
* * * * * * *
17122052 CGATGGTGCCCCGACGAAG-AAAAATGCGGCCCCAGCACATGCCTGAGCCCAGCAAGTGCTACCG
318 TGATGGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
17122116 TAACCCTCGGTCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAAC
382 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
17122181 TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCTCTCAACCGACCAGAGGGGAGGGAT
447 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
** ** * **
17122246 GCGCAAGCCGGGGATCGACCGCATCCACCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTGG
512 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG
** * *
17122311 TCCTATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAA-TGA----
577 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGACGGG
* * *
17122370 ---GCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGT
642 CGGGCGGGCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * * *
17122432 AGGTGTGTTTAGGCACATCTTCATATTTTTGCGTGCCACTACCATTTTTATGGCTTGTAAATTCA
706 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
17122497 TACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
771 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
17122562 GATTTTCAAAACTTTTTG-GAGTTCAGGATTTTTTAAAATTGTTTT-GGAAGCAGTTTTAGCC
836 GATTTTCGAAACTTTTTGCG-GTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCC
** * **
17122623 CGAAACATTTTTAGATGTGATCCTTGTATTTTTGTTCCCATGCACAAAAAAATTCAGCTAAAAAC
1 C-AAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
17122688 TCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
64 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17122753 ACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATG
129 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
17122818 AGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATACGCACACCCC
194 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
*** * ** * **
17122883 CCGG-CCCTTTATCGTC-GAACCTCAATG-TCACCGGTCAGGTTCTCCGGTGATGCTCCAACGAT
259 CCGGCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCC-GTGAT
* * *
17122945 GGTGCCCCGGTGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAC
322 GGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
17123009 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCG
386 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * *
17123074 TATGCCTAAATTAACCCACGAAACGAGTGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATACAC
451 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
** * * * * * * * * *
17123139 AAGCCGATGATCGGTTGGGCCCCCCTCTGCATGCTGTCGATCCTACTACCGTAACCCTCAGTCTG
516 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCG
* ** * * *
17123204 GTCTAATCTTAGACTGGGAATGAACTAGGCATGCCTAAGCCAACCGACGAAAGGAGCGGGCGGAC
581 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGGACGGGC
* * *
17123269 GGGCGGGCGGGCATTACGCCGGCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAG
643 GGGCGGGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17123334 GTGGGTTTAGGCAGATCTTCATATTTCT--ATGTAACAATGCCATTTTTGTGGCTTGTAAATTCA
708 GTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCA
* *
17123397 GACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
771 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
17123461 GATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGTAATTTTGGGCC
836 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCC
* * *
17123522 CAAAACTTGGCAAACTTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACT
1 C-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17123586 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTA
65 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17123651 CTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * *
17123716 GGGGTAGGGAGCCAATATAA-GGCCTAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
17123779 CAGCCCCCACGATCGTCGGAACCCCAATGC-GCCGGTTAGGTTCTCCAGCGATGCTTCGACGACG
260 CGGCCCCC-CGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGATG
* * * * * **
17123843 ATGCCCTGACGAAGAAAAATA-CGGCACCAGCACATTCCCGAGCCCAGCATGTGGTGGTGCAACC
323 GTGCCC-GGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
** * * *
17123907 CTCGGTTTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
387 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
17123972 ATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCA
452 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * ** * *
17124037 AGCCGGGGATCGCCCGAGTCCCCCTCTGCGTGCTGCCGATCCAGCTGCCACAACCCTCGGTCAGG
517 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGG
* *
17124102 TCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGC
582 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGGAC-GGGC
* * * *
17124167 GGGCGGGCGGGCACCACGTCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTA
643 GGGCGGGCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
17124232 GGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTGAT
707 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
17124297 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
772 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * *
17124362 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGTAAGGATTTTTTGCC
837 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17124422 CAAAACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACT
1 C-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17124487 CGAAGTGTACAACATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
65 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
17124552 CTGGCAGC-AACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTTTGAGTTCTCGAGGATTGATGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
17124616 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * *
17124681 CCGGCCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
259 CCGG--CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGA
* * * * * *
17124746 TGGTGCCCCGACGAAG-AAAAATGCAGCACCAGCACATGCCTGAGCCCAGTATGTGCTGCTGCAA
321 TGGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
17124810 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGAACGAACTCC
385 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
17124875 GTATGCCTAAGTCAACCCACG-AACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
450 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * *
17124939 CAAGCTGGGGATCGGCCGGGTCCCCCTTTGCATGCTGCCGAT-TTGCTGCTGTAACCCTC-GATC
515 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG-TC
* * *
17125002 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATG-AAAC-GA---GC-
579 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGACGGGCG
* * * * *
17125061 GGC---CGGGCACTACACCAGTCAGAGAGATGGGATGCGCAAGCCGGGGATCGATAAGGTGGTAG
644 GGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
17125123 GTGGGTTTAGGCACATCTTCATATTT-TCGCATGCCAATG-CATTTTTATGGCTTGCAAATTCAT
708 GTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
17125186 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
772 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * **
17125251 ATTTTATAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTCACCC
837 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCC
*
17125312 CAAACTTGGTAGACGTGATACC-TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
1 CAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
17125376 CAAAGTGTACATGATTTTGGGACCATTTGAAAAAAGCGT-CCCATTTCAG-CACTTTAATGGCTA
65 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17125439 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * **
17125504 GGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCACCAAACATCATGTGCGCACA-CCCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * *
17125568 CGACCCCCTCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCACCGGTGATG
260 CGGCCCCC-CGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCC-GTGATG
* * * * * *
17125633 GTGACCCGACGAAG-AAAAACGCAGCACCAGCACATGCCTGAGCCCAGTATGTGCTGCTGCAACC
323 GTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
** *
17125697 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATACGCTTAGACTGGGAATGAACTCCGT
387 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
17125762 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCCAGCCGACCAGAGGGGCGGGATGAGC
452 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * * * * * *
17125827 AAGCCGGAGATCGACCGAGT-CCCCTCTGCATGCTGTCGATCCTGCTACTGGAACCCTCGGTCTG
516 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCG
* * * *
17125891 GTCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAAC-GAGCAGGCGG
581 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGA-CGGGCGG
* * * * *
17125954 GCGGGTGAGCACTACGTCAGCCAGAGAGACAGGATGCGCAAGACGTGGATCGATAGGGTGGTAGG
645 GCGGGCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
17126019 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
709 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* **
17126084 AATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAAT
774 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
17126149 TTTTGAAACTTTTTGCAGTTTGGGATTTTTTACAATTTTTTTGGAAGGCGTTTTGGCCC
839 TTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CC
*
17126208 CAAACTTGGTAGACGTGATCCTTGTATATTTT-TTGGCATGCACAAAACAATTCAGCTAAAAACT
1 CAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
17126272 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
65 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17126337 CTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
*
17126402 CGGATA-GGGG--------A---CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
195 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * * *
17126455 CCAGCCCCCCCGATCATCGAAACCTCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
259 CC-GGCCCCCCGATCGTCGGAACCCCAATG-CT---GTC-GG---T-C-A-GGTTCTCCGGCGAT
* * * * *
17126520 GCTCCAATGATGGTGCCCCGGTGAAG-AAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGT
312 GCTCC-GTGATGGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * ** * * *
17126584 GCTACCGCAACCCTCGGTCTGATATGATCTTAGACTTGGAATGAACTCTGTATGCTTAGACTAGG
375 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
17126649 AATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
440 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * *
17126714 GCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACTGCAA
505 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAA
* * * * * *
17126779 CCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGGCAACCGACGAAATG
570 CCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--
*
17126844 AGCAGGCGGGCGGGTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCC
632 A--A--CGGAC----GGGCGGGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCC
* * * *
17126909 ATGGATCGATAGGGTGGTAGGTTGGTTGAGGCACATCTTCATATTTCTGCATGCCATTGCCATTT
688 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
17126974 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTAC
753 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17127039 TCGTTTTCTATTTTTCATGATTTTTGAAACTCTTTGCGGTTCGGGATTTTTTTAAAATTTTTTCG
818 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCG
17127104 GAAGGAGTTTTGGCCC
882 GAAGGAGTTTTGG-CC
* * * * * * *
17127120 CAAACTTGGCAGACGTGATCCTTCTATTTTTGTCGGTACGGAAAAAAAAATTCAGCTTAAAAA-T
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC-TAAAAACT
* * * *
17127184 CGAAGTTTACAAGATTTTTTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTA
65 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17127249 CTGGCAGCAAACTTGTAAAATCTCAAATGCTCTCTAAGGGGGGTGCGAGTTCTCAAGGTTTGATG
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
17127314 AGGGATA-GGGGCCAACATAAGGGCCAAGTACCAGCACCAATTGCACATCATGTGCGCACATCCC
194 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * *
17127378 CTCAGACCCCCCGATCATCAGAACCCCAATG-TCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTG
258 C-CCGGCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTC-CGTG
* * * * ** * * *
17127442 ATGGTGCCCCGGTGAAGAAAAATA-TGGCGCCAGCACATGCTTGAGCCCATCCTGTGCTGCCGTA
320 ATGGTG-CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* ** * *
17127506 ACCCTCAGTCCATTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTC
384 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * **
17127571 CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCACGATGC
449 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * * * *
17127636 GCAAGCCAAGTATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCTGCAATCGTCAGTC
514 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTC
* * * * * * **
17127701 CGATCTGACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAACGAGTGGGTGG
579 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGGACGG
* * * * * *
17127766 GCGGGCAGGCGGGCACAACGTCGGCCAAAGAGACGAGATGCGCAAGCAGTGGATCGATAGGGTGG
641 GCGGGCGGGCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * **
17127831 TAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATATCTTGTAAATTC
705 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
17127896 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
770 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
17127961 CGATTTT-GAAAC-ATTTACGGTTCTGGA-TTTTTAACATTTTTT-GGAAGGAGTTTTGGTCC
835 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CC
* *
17128020 CAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAGCTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
17128084 GAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
**
17128149 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCT-TGAGTTCTCAAGGTTTGACAA
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGTTTGATGA
* * *
17128213 GGGATAGGGGGCCAATATAAGGGCCAATGTACCAGCACCCATCACACATCATGTCCATACACCAC
195 GGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGC--GCA-CAC
* *
17128278 CCCCCGG-CCGCCGATCGTCGGAACCCCAATG-TCGTCGGTCAGGTTCTCCGACGATG----GT-
256 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGCTCCGTG
* * * * * **
17128336 A----CCCCGAC-AA-AGAAAATGCGGCACCAGCACATGCCCGAG-CTAGCATGTGCTGCCAAAA
320 ATGGTGCCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
17128394 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTTGGACTGGGAATGAACTC
385 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATGAACTC
* ** * * * *
17128459 CATATGCCTAAGTCAACCCTTGGAACGAGCGCGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATAC
449 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
17128524 GCAAGCTGGGGATCGGGT-GGGTCCCCCTTTGCGTGCTACTGATCCTGCTACCCGCAACCCTCAA
514 GCAAGCCGGGGATC-GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GCTGCAACCCTCAG
* * * * *
17128588 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATG-AAA-TGAGCGG
577 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGA-CGG
* * * * * *
17128651 GCGGACAGGTGGGCACTACGTCGTCCAGAGAGACCGGATGCGCAAGCCGTGGGTCGATAGGGTGG
641 GCGGGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
17128716 CAGGTGGGTTTATGCACATCTTCATAATTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
705 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
17128781 ATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
770 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
17128846 CGATTTTCAAAACTTTTTACGGTTCGGGAGTTTTTTAAAATTTTTT-GAGAAAGAGTTTTGGCCC
835 CGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCG-GAAGGAGTTTTGG-CC
* * *
17128910 CAACCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTT
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17128975 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
17129040 TGGCAGCAAACATGTAAAATCTCAAATGATCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAA
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
17129105 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
17129170 GGCCCCCCCGATCGCCGAAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATACTCCGGTGATGG
261 GG-CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCC-GTGATGG
* * * *
17129235 TGCCCATGCGAAGAAAAAAA-TGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAACCC
324 TGCCC-GGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * **
17129299 TCGGTCCGGTCCAATCTTAGATTAGGAATGAACTCCTTATGCTTAGACTAGGAATGAACTCCACA
388 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
17129364 TGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCAGCCAGAAGGGCGGGATGCGCAA
453 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* ** * * * *
17129429 GCCGAGGATTTGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCTGCAACCCTTAGTCCAGT
518 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGT
* * *
17129494 CTGATCTTAAACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AAACGAGCGAGCGGGCG
583 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAC--G-GA-CGGGCG
* *
17129558 GGCGGTCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
644 GGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
17129623 GTGGGCTTAGGCAGATGTTTATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATA
708 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
17129688 CAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAGGA
773 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17129753 TTTTCGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
838 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CC
* * *
17129813 CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
1 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17129878 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATTGCTAC
66 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
17129943 TGGCAGCAAACCTGTAAAATCCCAAATGCTTTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAG
131 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
17130008 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCATC
196 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A--CA-C
* ** ** * * * *
17130073 CCCCCGGCCCCATCGATCACCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGACGCTCTGGC
256 CCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTC-CGT
* * * * * * * * *
17130138 GATGATGTCCCAGC-AA-ACAAAAATGCGGCACCAACACATGCTCAAGCCTAGCATATGCTGCTG
319 GATGGTG-CCCGGCGAAGA-AAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * ** * *
17130201 CCACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAAC
382 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
17130266 TCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAACCGACCATAGGGGTGGGAT
447 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * * * *
17130331 GCGCAAGCTGGGGAACGATCGGGTCCCCCTCTACGTGCTGCCAATCCTCCTGCCGTAAGCTTCGG
512 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG
* * ** * *
17130396 TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AAACGCG-CGA
577 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACG-GACGG
* * * *
17130459 ACGGGCGGGCGGCCACTACACCGGCCAGAAAGACGGGATGCGCAAGCC
641 GCGGGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCC
17130507 CAATGCCGTC
Statistics
Matches: 9198, Mismatches: 1121, Indels: 487
0.85 0.10 0.05
Matches are distributed among these distances:
884 7 0.00
885 408 0.04
886 83 0.01
887 222 0.02
888 279 0.03
889 661 0.07
890 469 0.05
891 701 0.08
892 74 0.01
893 24 0.00
894 275 0.03
895 139 0.02
896 359 0.04
897 574 0.06
898 408 0.04
899 813 0.09
900 702 0.08
901 472 0.05
902 272 0.03
903 397 0.04
904 355 0.04
905 388 0.04
906 15 0.00
907 15 0.00
908 297 0.03
909 7 0.00
910 3 0.00
911 212 0.02
912 172 0.02
913 318 0.03
914 5 0.00
915 1 0.00
916 1 0.00
919 2 0.00
920 3 0.00
921 1 0.00
922 1 0.00
924 62 0.01
925 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGTGATGGTG
CCCGGCGAAGAAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGACGGGCGGGCGGGC
GGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
Found at i:17122173 original size:26 final size:26
Alignment explanation
Indices: 17122137--17122189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17122127 CTGGTCGGAT
17122137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17122163 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17122189 C
1 C
17122190 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17123055 original size:26 final size:26
Alignment explanation
Indices: 17123026--17123078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123016 CTGGTCCGAT
* *
17123026 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17123052 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17123078 C
1 C
17123079 CTAAATTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17123952 original size:26 final size:26
Alignment explanation
Indices: 17123923--17123975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123913 TTGATCCGAT
*
17123923 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17123949 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17123975 C
1 C
17123976 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17126641 original size:26 final size:26
Alignment explanation
Indices: 17126612--17126664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17126602 CTGATATGAT
*
17126612 CTTAGACTTGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
17126638 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
17126664 C
1 C
17126665 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:17127564 original size:26 final size:26
Alignment explanation
Indices: 17127525--17127577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17127515 CCATTTCGAT
* *
17127525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
17127551 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
17127577 C
1 C
17127578 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:17128446 original size:27 final size:27
Alignment explanation
Indices: 17128416--17128467 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
17128406 TCCGATCTTA
*
17128416 GACTGGGAATGAACTCCGTATGCCTTG
1 GACTGGGAATGAACTCCATATGCCTTG
17128443 GACTGGGAATGAACTCCATATGCCT
1 GACTGGGAATGAACTCCATATGCCT
17128468 AAGTCAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (27 bp):
GACTGGGAATGAACTCCATATGCCTTG
Found at i:17129366 original size:26 final size:26
Alignment explanation
Indices: 17129314--17129366 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17129304 CCGGTCCAAT
* **
17129314 CTTAGATTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCACATG
17129340 CTTAGACTAGGAATGAACTCCACATG
1 CTTAGACTAGGAATGAACTCCACATG
17129366 C
1 C
17129367 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:17130258 original size:26 final size:26
Alignment explanation
Indices: 17130222--17130274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17130212 TTGGTCCAAT
17130222 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
17130248 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17130274 C
1 C
17130275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17131530 original size:25 final size:26
Alignment explanation
Indices: 17131502--17131553 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17131492 CTGGTCCGAT
17131502 CTTAGAC-AAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
17131527 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
17131553 C
1 C
17131554 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:17131816 original size:159 final size:159
Alignment explanation
Indices: 17131527--17131903 Score: 490
Period size: 159 Copynumber: 2.4 Consensus size: 159
17131517 ACTCCGTATG
** *
17131527 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAAAGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17131592 CGGCCAGATGGGCGAGATGCGTAAGTCAGGGATCGACCGGGTCCCTCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGACCGGGTCCCTCTCTACGTGCTACCGATCC
* * *
17131657 TGCTATCGCAACACTCGGT-CTGGTCTGAT
131 TGCTACCACAACACTCGGTCCGGGTC-GAT
* *
17131686 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * **
17131751 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCC-CTTCTATGTGCTGTCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGACCGGGTCCCTC-TCTACGTGCTACCGATC
*
17131815 CTGCTACCACAACCCTCGGTCCGGGTCGAT
130 CTGCTACCACAACACTCGGTCCGGGTCGAT
* * *
17131845 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GACGGGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCG
17131904 GGCGGGCACT
Statistics
Matches: 189, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
158 2 0.01
159 182 0.96
160 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGACCGGGTCCCTCTCTACGTGCTACCGATCC
TGCTACCACAACACTCGGTCCGGGTCGAT
Found at i:17132602 original size:26 final size:25
Alignment explanation
Indices: 17132561--17132609 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
17132551 CTAGTTTGAT
*
17132561 CTTAGACTGGAATGAACTTCGTACG
1 CTTAGACTGGAATGAACTCCGTACG
17132586 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACT-GGAATGAACTCCGTA
17132610 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTACG
Found at i:17133925 original size:26 final size:26
Alignment explanation
Indices: 17133889--17133941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17133879 CTGGTCCAAT
* *
17133889 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17133915 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17133941 C
1 C
17133942 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17134455 original size:899 final size:898
Alignment explanation
Indices: 17132710--17134471 Score: 2565
Period size: 899 Copynumber: 2.0 Consensus size: 898
17132700 TGCATGTGAG
* *
17132710 TACTAGTAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGAT
1 TACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
17132775 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * ** **
17132840 CCCAGGCCGCCCGAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGTGATGCTCCGACG
131 CCCAGCCCCCCCGAATCGTCAAAACCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCTCCGACG
* * **
17132905 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGAGGCAA
196 ATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGACACAA
* * *
17132970 CCTTCGGTCTGGTCCGATCTTAGAATGGTATGAACTCCGTATGCTTAGATAGGGAATGAACTTCG
261 CCTTCGGTCTGGTCCAATCTTAGAATGGAATGAACTCCGTATGCTTAGATAGGGAATGAACTCCG
*
17133035 TATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAGCCAGCCAGAGGGGCGGATCCACA
326 TATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAGCCAGCCAAAGGGGCGGATCCACA
* * * *** **
17133100 AGCCAGGGATTGGCTGGGTCCCCTCTGCGTGTTACCGATCCTACTGTTGCAACCCTCAGTACGGT
391 AGCCAGGGATCGGCTGGGTCCCCTCTGCGTGCTACCAATCCTACTACCGCAACCCTCAGTACAAT
*
17133165 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGCGGGCGG
456 TCGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA--G-GCGGGCGG
** * *
17133230 GTGGGCGGGCACTACGTCGGTAAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
518 GCAGGCGGGCACTACGTCGGCAAGAGAGACGGGATGCGCAAGCCATGGATCGAAAGGGTGGTAGG
*
17133295 TGGGTTTAGGCACATCTTCATATTTCTACATGTCAATGCCATTTTTATGGCTTGTAAATTCATAC
583 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
17133360 AATGGTCCCTTAAGCCTTCATGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
648 AATGGTCCCTTAAGCCTTCACGGGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
17133425 TTTCAAAACTTTTAACGGTCCGGGATTTTTTAAAATGTTTTCGGAAGGAGTTTTGGTCCCAAACT
713 TTTCAAAACTTTTAACGGTCCGGCATTTATTAAAATGTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17133490 TGGTAGACATGGTCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
778 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTG
17133555 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCTTTTAATGGC
843 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCTTTTAATGGC
* *
17133611 TACTGGTAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
17133676 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * **
17133741 CCCCGACCCCCCCG-ATCGTCAAAACCCCAATGCCGTCGGTTAGGTTCTCCTACGATGCTCCGTT
131 CCCAG-CCCCCCCGAATCGTCAAAACCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCTCCGAC
* **
17133805 GATGGTGCCCCGACGAAGACAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCT-ACCAC
195 GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGA-CAC
* *
17133869 AAGCCTT-GGTCTGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACT-GGGAATGAA
259 AA-CCTTCGGTCTGGTCCAATCTTAGAAT-GGAATGAACTCCGTATGCTTAGA-TAGGGAATGAA
** * * * * *
17133932 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCT-TTCAGCCGGCCAAATGGGCAGG
321 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGG-TGCTCAGCCAGCCAAAGGGGC-GG
* * * * *
17133996 ATGCGCAAG-CTGAGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCC
384 ATCCACAAGCCAG-GGATCGGCT-GGGT-CCCCTCTGCGTGCTACCAATCCTACTACCGCAACCC
* * *
17134059 TCA-TCCAA-TCTGATCTAAGACTGGGGATGAACTCCGTATGCTTAAGCCAACCGACAAAACGA-
446 TCAGTACAATTC-GATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG
* * * * *
17134121 GCGGGTGGGCAGGCGGGCACTGCGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGAAAGG
510 GCGGGCGGGCAGGCGGGCACTACGTCGGCAAGAGAGACGGGATGCGCAAGCCATGGATCGAAAGG
* *
17134186 GTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
575 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
17134251 ATTCATACAATGGTCTCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
640 ATTCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTGCATGGCAAGACGACTCGTTTTCTATTT
** * * * * *
17134316 TTCACGATTTTTGAAACTTTTTACGGTTCGGCATTTATTAAAATTTTTTTGGAAGGATTTTTGGC
705 TTCACGATTTTCAAAACTTTTAACGGTCCGGCATTTATTAAAATGTTTTCGGAAGGAGTTTTGGC
* *
17134381 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAGAAAA-ATTCAGCTAAAAA
770 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA-AAAACATTCAGCTAAAAA
17134445 CTCAAAGTGTACAAGATTTTGTGACCA
834 CTCAAAGTGTACAAGATTTTGTGACCA
17134472 CCCCCCGGCC
Statistics
Matches: 766, Mismatches: 83, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
899 315 0.41
900 5 0.01
901 248 0.32
902 95 0.12
903 71 0.09
904 32 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
CCCAGCCCCCCCGAATCGTCAAAACCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGACACAA
CCTTCGGTCTGGTCCAATCTTAGAATGGAATGAACTCCGTATGCTTAGATAGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAGCCAGCCAAAGGGGCGGATCCACA
AGCCAGGGATCGGCTGGGTCCCCTCTGCGTGCTACCAATCCTACTACCGCAACCCTCAGTACAAT
TCGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGCGGGCGGGCA
GGCGGGCACTACGTCGGCAAGAGAGACGGGATGCGCAAGCCATGGATCGAAAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGGGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
CAAAACTTTTAACGGTCCGGCATTTATTAAAATGTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCTTTTAATGGC
Found at i:17134724 original size:26 final size:26
Alignment explanation
Indices: 17134695--17134747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17134685 CTGGTCCGAT
*
17134695 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17134721 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17134747 C
1 C
17134748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17135628 original size:26 final size:26
Alignment explanation
Indices: 17135598--17135650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17135588 CCGGTCTGAT
* * *
17135598 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACCGAGAATGAAATCCATATG
17135624 CTTAGACCGAGAATGAAATCCATATG
1 CTTAGACCGAGAATGAAATCCATATG
17135650 C
1 C
17135651 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAAATCCATATG
Found at i:17136538 original size:26 final size:26
Alignment explanation
Indices: 17136502--17136554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136492 CTGGTCCAAT
* *
17136502 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17136528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17136554 C
1 C
17136555 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17136987 original size:898 final size:895
Alignment explanation
Indices: 17134493--17137440 Score: 3980
Period size: 898 Copynumber: 3.3 Consensus size: 895
17134483 CCCGATATAA
* * * * *
17134493 GGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATGATGTGCGCACACTCCCCCTA-CCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCC
* * * * * * *
17134557 CCCGATCATCGGAACCCCAAAGCCACCGATCAGGTTCTCCGGTGATGCTCCGATGAAGGTTCCCC
66 CCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
** * * * *
17134622 GATTAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAGCATGTGCTGCCACAACCCTTGGTCT
131 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTCC
* * *
17134687 GGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAA
196 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
17134752 GTCAACCAACGGAATGAGCGTGCGGGCGCTCAGCCGGCCTGAGGGGCGGGATACGTAAGCCGGGG
261 GTCAACCCACGAAATGAGCGTGCGGGCTCTCAGCCGGCC--AGAGGCGGGATGCGCAAGCTGGGG
* * * * * *
17134817 ATCAGTCGGGTCCCCCTCTGCATGCTGCTAATCTTGCTGTCG-AACCCTCGGTCCAGTCCGATCT
324 ATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAACCCTC-ATCCAGTCTGATCT
* * *
17134881 TAGGCTGGGAACGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGTAGGGCGGGTG
388 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--G-GGT-GGGCGGGCG
* * * * *
17134946 GGCTCTATGCCGGCCCGTGAGACGGGATGTGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTT
449 GGCACTACG-CGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
17135011 AGGCACATCTTAATATTTTTGCATGCCAATACAATTTTTATGGCTTGTAAATTCATACAATGGTC
513 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * **
17135076 TCTTAAGCCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAA
578 CCTTAAGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAA
** * * * *
17135141 ACTTTTTATGATTCGGGC-TTTTTTAAAATTTTTTCAGAAGGCGTTTTT-GCCCCAAACTTGCTA
643 ACTTTTTCCGGTTC-GGCATTTTTTAAAATTTTTTCGGAAGG-ATTTTTGGCCCCAAACTTGGTA
* * * *
17135204 GACGTGAT-CTTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTACA
706 GACATGATCCTTT-TATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
17135268 AGATTTTGTTACGATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAG-AAA
770 AGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * * * *
17135332 CCTGTTACATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT-TGAGGTTTGATGAGAGATAGG
835 CCTATAAAATCTCTAATGCTCTTTAAGGGGG-GTGAGTTCTCAG-GGTTTGATGAGGGATAGG
* * * * *
17135394 GGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCCCCCTCGGCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-CGACCC
* * * * * * * *
17135459 CCCCGATCGTCGAAACCCTAACGCCATCAGTCAGGTTCTACGGCAATGCTCCGACGATGGTTCCC
65 CCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCC
** ** * *
17135524 CGGTGAAGAAAAATGCGAAACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGATC
130 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTC
** * * * * *
17135589 CGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACCGAGAATGAAATCCATATGCCTA
195 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17135654 CGTCAACCCACGAAATGAGCGTACGGG-TGCTCAGCCGACCAGAGGCGTGGGATGCGCAAG-TCG
260 AGTCAACCCACGAAATGAGCGTGCGGGCT-CTCAGCCGGCCAGAGGC--GGGATGCGCAAGCT-G
* * * * * * * * * *
17135717 AGGATTGGTTGGGTCCCCCCTCTGCATGCTGGCGATCCTGCTGCCACAACCTTTGACCCGGTCTG
321 GGGATCGGTCGGGT-CCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAACC-CTCATCCAGTCTG
* *
17135782 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGAGGGTGGGCGGGCG
384 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGC-
* * * *
17135847 GGCGAGCACTACGCAGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGA
448 -G-G-GCACTACGC-GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17135912 GTTTAGGCACATCTTCATATCTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
509 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
17135977 GGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTT
574 GGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTT
*
17136042 TGAAACTTTTTCCGGTTCGGCATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGG
639 TGAAACTTTTTCCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
17136107 TAGACATGATCCTTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
704 TAGACATGATCCTTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17136172 AAGATTTTGTGACCATTTGAAAAAAATGTTCCCATTTCAGACACTTTATTGGCTACTGGCAGCAA
769 AAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
17136237 ACCTATAAAATCTCTAATGCTCTTTAAGGGGGGTGAGTTCTCAGGGTTTGATGAGGGATAGG
834 ACCTATAAAATCTCTAATGCTCTTTAAGGGGGGTGAGTTCTCAGGGTTTGATGAGGGATAGG
17136299 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCC
* ** * ** *
17136364 CCCGATCGTCAAAACCCCAATGCCGTCGGTTAGGTTCTCCTACGATGCTCCGTTGATGGTGCCCC
66 CCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
* * * * *
17136429 GACGAAGACAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAAGCCTTGGTCT
131 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTCC
* *
17136494 GGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
196 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
17136559 GTCAACCCACGAAATGAGCGTGCGGGCTTTCAGCCGGCCAAATAGGCAGGATGCGCAAGCTGGGG
261 GTCAACCCACGAAATGAGCGTGCGGGCTCTCAGCCGGCC--AGAGGCGGGATGCGCAAGCTGGGG
* * * *
17136624 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCATCCAATCTGATCTA
324 ATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCATCCAGTCTGATCTT
* * ** *
17136689 AGACTGGGGATGAACTCCGTATGCTTAAGCCAACCGACAAAACGAGCGGGTGGGCAGGCGGGCAC
389 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGGCAC
* * *
17136754 TACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTAGATCGAAAGGGTGGTAGGTGGGTTTATGCA
454 TACG-CGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
17136819 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
518 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
17136884 AGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
583 AGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
17136949 TTCCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGA
648 TTCCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGA
17137014 TCCTTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
713 TCCTTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17137079 TGACCATTTGAAAAAAGTGTTCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTATAAA
778 TGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
17137144 ATCTCTAATGCTCTTTAAGGGGGGTGAGTTCTCAGGGTTTGATGAGGGATAGG
843 ATCTCTAATGCTCTTTAAGGGGGGTGAGTTCTCAGGGTTTGATGAGGGATAGG
* *
17137197 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC-TAGTGCGCACACCCCCTCG-GCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT-GTGCGCACACCCCCCCGACCC
* * *
17137260 CCCCGATCG-CTGGAACCCTAATGCCGCCGGTCAGGTTCT-C--CG--G-T--GAT--T-GTGCC
65 CCCCGATCGTC-GAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCC
* * * * * *
17137313 GCAACGAAGGAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
129 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGT
*
17137378 CCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
194 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
17137441 TTAGACTGGG
Statistics
Matches: 1808, Mismatches: 213, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
886 119 0.07
887 1 0.00
889 2 0.00
891 1 0.00
892 1 0.00
894 2 0.00
896 2 0.00
897 35 0.02
898 490 0.27
899 2 0.00
900 1 0.00
901 64 0.04
902 68 0.04
903 254 0.14
904 259 0.14
905 467 0.26
906 40 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCC
CCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTCC
GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAATGAGCGTGCGGGCTCTCAGCCGGCCAGAGGCGGGATGCGCAAGCTGGGGAT
CGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCATCCAGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGGCACTA
CGCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGT
CTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTC
CGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCC
TTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
TCTAATGCTCTTTAAGGGGGGTGAGTTCTCAGGGTTTGATGAGGGATAGG
Found at i:17137424 original size:26 final size:26
Alignment explanation
Indices: 17137388--17137466 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17137378 CCAGTCCAAT
17137388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17137414 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17137440 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17137466 C
1 C
17137467 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17138557 original size:26 final size:26
Alignment explanation
Indices: 17138528--17138580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17138518 CCGGTCTGAT
* *
17138528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGAATG
17138554 CTTACACTGGGAATGAACTCCGAATG
1 CTTACACTGGGAATGAACTCCGAATG
17138580 C
1 C
17138581 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGAATG
Found at i:17139794 original size:678 final size:682
Alignment explanation
Indices: 17138481--17139835 Score: 1974
Period size: 678 Copynumber: 2.0 Consensus size: 682
17138471 GCACCAGCAC
* ** * * * *
17138481 ATGCTCGAGCCCAGCATGTGCTACTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGAAATGAAC
* *
17138546 TCCGTATGCTTACACTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAATGAGCGTGTTAG
66 TCCGTATGCTTACACTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGTCAG
* * * * *
17138611 CGCTCAGCCTGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCT
131 CGCTCAGCCGGCCAGAGGAGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCT
** *
17138676 GCCGATCCTACTATCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCTTTATGTC
196 GCCGATCCTACTATCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* **
17138741 TAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACAGG
261 TAAGCCAACCGAC-AAAC-AGA--GCGAGCGGGCAAGCGGGCACTACACCGACCAGAGAGACAGG
* * * *
17138806 ATGCGCAAGCCGTGGATAGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGC
322 ATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACATGC
* *
17138871 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCATGTGAAGTTTCAT
387 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCAT
* * *
17138936 GGCAAGATGACTCGTTTTCTACTTTTCATGATTTTTTAAACTTTTTATGGTTCGGGATTTTTTAA
452 GGCAAGACGACTCGTTTTCTACTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAA
* * * * *
17139001 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCAT
517 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGATAGACATGATCCTTCTATTTTTGTTGCCAT
*
17139066 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTC
582 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTC
17139131 CCCATTTCAGACACTTTAATGGCTACTAGCAAAAAA
647 CCCATTTCAGACACTTTAATGGCTACTAGCAAAAAA
* *
17139167 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGTCTAGAAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGAAATGAAC
* * * *
17139232 TCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CAG
66 TCCGTATGCTTACACTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGTCA-
* * * * *
17139296 GCGCTTAGCCGGCCAGAGGAGCGGGATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCATGC
130 GCGCTCAGCCGGCCAGAGGAGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGC
* * *
17139361 TGCCGATCCTA-TTTCCGCAGCCCTCGATCTGATCCAGTCTTAGACTGGGAATGAACTCCGTATG
195 TGCCGATCCTACTAT-CGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17139425 CCTAAGCCAACTGAC-AA-A-A-CGAGTGGGCAAGCGGGCACTACGCCGGCCAGAGAGACGGGAT
259 CCTAAGCCAACCGACAAACAGAGCGAGCGGGCAAGCGGGCACTACACCGACCAGAGAGACAGGAT
* *
17139486 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACATGCCA
324 GCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACATGCCA
*
17139551 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCATGGGAAGTTTCATGG
389 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCATGG
17139616 CAAGACGACTCGTTTTCTA-TTTCTC-TCGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAA
454 CAAGACGACTCGTTTTCTACTTT-TCAT-GATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAA
** * * *
17139679 AATTTTTTCGAAAGGA-TTTTCGGTTCCAAGCTTGATAGACATGGTCCTTGT-TTCTTTGTTGCC
517 AATTTTTTCGAAAGGAGTTTT-GGCCCCAAACTTGATAGACATGATCCTTCTATT-TTTGTTGCC
* *
17139742 ATGCACAAAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTG
580 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTG
17139807 TCCCCATTTCAGACACTTTAATGGCTACT
645 TCCCCATTTCAGACACTTTAATGGCTACT
17139836 GGCAGCAAAC
Statistics
Matches: 599, Mismatches: 64, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
677 10 0.02
678 346 0.58
681 1 0.00
682 1 0.00
684 2 0.00
685 3 0.01
686 236 0.39
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (682 bp):
ATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGAAATGAAC
TCCGTATGCTTACACTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGTCAG
CGCTCAGCCGGCCAGAGGAGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCT
GCCGATCCTACTATCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACAAACAGAGCGAGCGGGCAAGCGGGCACTACACCGACCAGAGAGACAGGATGC
GCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCATGGCA
AGACGACTCGTTTTCTACTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATT
TTTTCGAAAGGAGTTTTGGCCCCAAACTTGATAGACATGATCCTTCTATTTTTGTTGCCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTAGCAAAAAA
Found at i:17140143 original size:26 final size:26
Alignment explanation
Indices: 17140114--17140166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17140104 GTGGTTCGAT
*
17140114 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17140140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17140166 C
1 C
17140167 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17141272 original size:905 final size:891
Alignment explanation
Indices: 17139167--17141953 Score: 3606
Period size: 905 Copynumber: 3.1 Consensus size: 891
17139157 TAGCAAAAAA
* *
17139167 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGTCTAGAAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAAC
*
17139232 TCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
66 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
* * * ** *
17139297 CGCTTAGCCGGCCAGAGGAGCGGGATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCATGCT
131 CGCTCAGCC-GCCAGAGGGGC-TGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCT
** * * * *
17139362 GCCGATCCTATTTCCGCAGCCCTCGATCTGATCCAGTCTTAGACTGGGAATGAACTCCGTATGCC
194 -CCGATCCTGCTGCCGCAACCCTCGATCTGGT-CAATCTTAGACTGGGAATGAACTCCGTATGCC
17139427 TAAGCCAACTGACAAAACGAGTGGGCAA---G-C--GGGCACTACGCCGGCCAGAGAGACGGGAT
257 TAAGCCAACTGACAAAAC-AG-GGGCAAGCGGCCGGGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
17139486 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACATGCCA
320 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
* * *
17139551 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCATGGGAAGTTTCATGG
385 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17139616 CAAGACGACTCGTTTTCTATTTCTCTCGATTTTTTAAACTTTTTACGGTTC-GAGATTTTTTAAA
450 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAA
* * * * * * *
17139680 ATTTTTTCGAAAGGATTTTCGGTTCCAAGCTTGATAGACATGGTCCTTGT-TTCTTTGTTGCCAT
514 ATTTTTTCGGAAGGATTTT-GGCTCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCAT
* *
17139744 GCACAAAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTC
577 GCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
17139809 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
641 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
17139874 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCC
706 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCC
* *
17139939 ATAGCACATCATGTGCCCGCTACACCCCCCGG-CCCACGATCGTCCGGAACCCCAACTGCCGCTG
770 ATCGCACATCATGTG--CG-TACACCCCCCGGCCCCCCGATCGT-CGGAACCCCAA-TGCCGC-G
* * ** ** * *
17140003 GTCAAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCAGTTGAAGAAAAATACGGCACTAGCAC
829 GTC-AGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCAC
* ** *
17140068 TAT-CCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTGTGGTTCGATCTTAGAC-AGGGAATGA
1 -ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTA-GGAATGA
* * *
17140130 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAACGAGCATGCA
64 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
*
17140194 GGCGCTTCAGCCGACCATGA-GGGCTGGGATGCCGCAAGACGGGGATCGATCGGCGTCCCCCTCT
129 GGCGC-TCAGCCG-CCA-GAGGGGCT--GATG-CGCAAGTCGGGGATCGATCGG-GTCCCCCTCT
* * * * * *
17140258 GCACCTGC-CGGATCCTGCTGCTGCAACCCCCGATCCT-GTCCCAATCTTATACTAGGAGTG-AC
187 GCA--TGCTCCGATCCTGCTGCCGCAACCCTCGAT-CTGGT--CAATCTTAGACTGGGAATGAAC
* * *
17140320 TCCGTATGCCTAAGCTAATCTGACAAAAC----G--AGCGTGCAGGCGGGCACTACGGCCCGCCA
247 TCCGTATGCCTAAGCCAA-CTGACAAAACAGGGGCAAGCG-GCCGG-GGGCACTAC-GCCGGCCA
* * *
17140379 GAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCTTAT
308 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
17140444 TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGTCTTCACGT
373 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
17140509 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
438 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
* * * *
17140574 GATTTGTTGAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
503 GATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTT
17140639 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
567 TTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17140704 AAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
631 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17140769 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCAAAATA
696 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
17140834 CCAGCACCCATCGCACATCATGTGCGTACACCCCCTCGGCCCCCCAGATCGTCAGAACCCCAATG
761 CCAGCACCCATCGCACATCATGTGCGTACACCCCC-CGGCCCCCC-GATCGTCGGAACCCCAATG
* * *
17140899 TCGTCGGTCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCG
824 CCG-CGGTCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
17140964 GCAC
888 GCAC
* * ** ** *
17140968 ATGCTCGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAAC
* *
17141033 TCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
* * *
17141098 CGCTCAGCCTGTCAGAGGGGCATGATGCGTAAGTCGGGGATCGATCGGGTCCCCTTCTGCATGCT
131 CGCTCAGCC-GCCAGAGGGGC-TGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCT
* * * * * * * *
17141163 ACTGATCTTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCC
194 -CCGATCCTGCTGCCGCAACCCTCGATCTGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCC
* *
17141228 TATGCCAACCGACAAAACAAGGGAGCAAGCGGGCCGGTGGGCACTACGCCGGCCAGAGAGACGGG
257 TAAGCCAACTGACAAAAC-AGGG-GCAAGC-GGCCGG-GGGCACTACGCCGGCCAGAGAGACGGG
*
17141293 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGC
318 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* *
17141358 CAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
383 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
17141423 GGCAAGACAACTTGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGCGGTTCAGGATTTTTTAA
448 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
* * * *
17141488 AATTTTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATGCTTGAATTTTTTTTGGCAT
513 AATTTTTTCGGAAGGA-TTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
17141553 GGACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAGGTGTC
577 GCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
**
17141617 CCCATTTCAGACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
641 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
17141682 GGTGTGAGTTCTCGAGGATTGATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
706 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
17141747 TCGCACATCATGTGCGCACACCCCCCGGCCCTCCCTATTGCCGGAACCCCAATGCCACCGGTCAG
771 TCGCACATCATGTGCGTACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCC-GCGGTCAG
* * * *
17141812 GTTCTCCGGTGATGCTCGGTGATGCTCTGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAG
834 G-T-T-C-----T--TCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
17141877 CAC
889 CAC
* * * ** *
17141880 ATGCCCGAGCCTAGTATGTGTTGCCACAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAAC
*
17141945 TTCGTATGC
66 TCCGTATGC
17141954 CTAAGCCAAC
Statistics
Matches: 1648, Mismatches: 173, Indels: 118
0.85 0.09 0.06
Matches are distributed among these distances:
896 5 0.00
897 25 0.02
898 50 0.03
899 47 0.03
900 128 0.08
901 150 0.09
902 88 0.05
903 227 0.14
904 362 0.22
905 446 0.27
906 10 0.01
910 1 0.00
912 109 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
CGCTCAGCCGCCAGAGGGGCTGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTCC
GATCCTGCTGCCGCAACCCTCGATCTGGTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACTGACAAAACAGGGGCAAGCGGCCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
CGGAAGGATTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGTACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTTCGGTGA
TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
Found at i:17146194 original size:894 final size:893
Alignment explanation
Indices: 17142835--17160552 Score: 21942
Period size: 899 Copynumber: 19.9 Consensus size: 893
17142825 AATGAATGAA
* *** ** * * *
17142835 CTCAGCCGGCCAGAAGGAATGGATGAACAAGCCAGGGATCGA-CTGGGTCCCCCTTTGTGTGCTG
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTG
* ** ** * * * * *
17142899 TCGATCCTGCTGTTGCAACCCTCTATCTGGTCCGATCTGAAACTGGGAATGAATTCTGTATGCCT
65 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
17142964 AAGCCAACCGACTAAACGAACGGGCGGGCGGGCACTACGCCGTG-CAAAAAGACGGGATGCGCAA
130 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG-GCCAGAGAGACGGGATGCGCAA
* * *
17143028 GCCGTGGATCAATAGGGTGGTAGCTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
194 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17143093 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
259 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *** *
17143158 TACTCGTTTTCTATTTTTCATGATTTACAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
324 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTT
* * * *
17143223 CGAAAGGAGTTTTGGTCCCAAACTTGGCAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
388 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
17143288 CAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
17143353 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
17143418 TTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAAGGACAAGTACCAGCATCCATCGTACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
17143483 CATGTGCGCATACCCCCTGGCCCCACCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCG
648 CATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * * *
17143548 GCGATGCTCCGGCGATGGTGCCCCGAGGAAGAAAAATGTGCCACCAGCACATGCCCAAGCCCAGT
712 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
17143613 ATGTGCTGCCGTAAACCTCAGTCTGATCCGATCTTAGACTGGGAATGAA--CC---T-C---G--
777 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
17143667 T----ATG-----C---T---TAAGTCAACCCACGGAACGAGTGTGCGGGTG
842 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * * * * *
17143704 CTCAATCGGCCAGAGGGG-GGGATGCTCGAGCTGGGGATC-AGTAGGGTCCCCCTCTGCATGTTA
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTG
* * * * * * * *
17143767 CCAATCCTGCTACCGTAACCCTTGGTCTGATCCGATCTTAGATTGGGAATGACCTCCGTATGCCT
65 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
17143832 AAGCCAACCGATGAAACGAGTGGGCGGGGGCGGACGGCCCTACGTCAGCCAGAGAGACGGGATGC
130 AAGCCAACCGACGAAACGAGCGGGC--GGGC-G--GGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
17143897 GCAAGCCGTAGATCGATAGAGTGGTAGGTGGGTTTAGGGACAT-TTCATATTTCTACGTGCCAAT
190 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
17143961 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCA
255 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
17144026 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAAGT
320 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATT
* *
17144091 TTTTCGGAAGGA-TTTTCGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCA
384 TTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
17144155 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCC
448 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
17144220 CATTTCAGACGCTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAA-GGGT
512 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17144283 TGTGAGTTCTTGAGGTTTGATG-GGAGATAGGGGGCC-ATATAAGGGCCAAGTACCAGCACGCAT
577 TGTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * * * * * *
17144346 CATAAATCA-GAGCGCACAACCCCCCTGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCA
641 CGCACATCATGTGCGCAC-ACCCCCC-G-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
** * * * * *
17144410 GGTTCTTTGGCGATGCTCCGACGATGGTTCCCCGATGAAGAAAAATGCAGCACCAGTACATGCCC
703 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* *
17144475 GAGCCCAGCATGTGCTGCCGCAACCCTCGGT-TCGATCCGATCTTAGGCTGGGAATGAACTCCGT
768 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
17144539 ATGCTTCGAATGGGAATAAACTCCGCATGCCTAAGTCAACCCACGAAATGAACGTGTGGGGAG
832 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCG
** ** * * *
17144602 CTCAGCCGGCCAGAGGGG-ATGATGCGCAAGCCGGGGATCGGCCAGGTCCCACTCTACGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * *
17144666 CGATCTTGCTGCAGTAACCCAT-GGTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCT
66 CGATCCTGCTGCCGCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
17144730 AAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGCGGGTACTACGCTGGCCAGAGAGACGGGA
130 AAGCCAACCGACGAAACGA----GCGGGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGA
*
17144795 TGCGCAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
187 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
17144860 AATGCCATTTTTATGGCTTCTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATG
252 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *** *
17144925 GCAAGATGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTATAGTTCAGGATTTTATAAA
317 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAA
* * * *
17144990 ATTTTTTTGAAAGG-GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATG
381 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
17145054 CACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGCCC
446 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
17145119 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCCCTTTAAGGGG
511 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
17145184 GTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCAT
576 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
17145248 CGCACATCATATGCGCACAACCCCCGGCCCCCCCGATCGCCGGAAGCCCAATGCCGTCGGTCAGG
641 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * *
17145313 TTCTCCGGTGATGCTCCGACGATCGTGCCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGA
705 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* ** *
17145378 GCCTAGCATGTGCTGCCGCAACCCTCAATCTGGTCCGATCTTAGAATGGGAATGAACTCC-TAAT
770 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT-AT
** *
17145442 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAACGTGCGGGCG
834 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17145502 CTCAGTCGGCCAGAGAGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * *
17145567 CGATCCTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
17145632 AGCCAACCGACGAAACGAGCGGGCAGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGC
131 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
17145697 CGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGCAATT
196 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
17145762 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
261 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
17145827 CTTGTTTTCTATTTTTCACAATTTTTGAAAATTCTTGCGGTTCAGGATTTCTTAAAATTTTTTGG
326 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCG
*
17145892 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17145957 ATTCAGCTAAAAACTCAAAGTGTACAAG-TTATTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATT-TTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17146021 GACACTTTACTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
17146086 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17146151 ATGTGCACACACCCCGCGGCCCCCCGATCG-CTGGAACCCCAATGCC-ACAGGTCAGGTTCTCC-
649 ATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* *
17146213 -----G----G-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGG
712 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *** *
17146268 ATGTGCTACC-TAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
777 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
17146332 TGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
842 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17146384 CTCAG-CGGCCAAAGGGGCGGGATGCGTAAGCCAGGGATCGGTCGAGTCCCCCTCTGCATGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * * * *
17146448 CAATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTCAGACTGGGAATGAACTCCGTATGCCAA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
17146513 AGCCAACCGACGAAACAAGCGAGCGGACGGGCACTACGCCCGCCAGAGACACGGGATGCGCAAGC
131 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*** *
17146578 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAGTGCCATT
196 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17146643 TTTATGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCGA
261 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
17146708 CTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTTG
326 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCG
* *
17146773 GATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* ** *
17146838 ATTCAGCTAAAAAATTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17146903 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
17146968 CTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGTACCCATCGCACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * * * *
17147033 TGTGCGCACACCCCCCCGACCCCCCGATCACCGAAACCCCAATGACGCCGATCAGGTTCTCCTGC
650 TGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
* *
17147098 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCAT
714 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
17147163 GTGCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
779 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * **
17147228 GGAATGAACTACGTATGCCTAAGTCAACCCATGAAAAAAGCGTGCGGGCG
844 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * *
17147278 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTAGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * *
17147343 CGATCCTGCTACCGTAACCCTTGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
66 CGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** *
17147407 AAGCCAACCAACGAAACTAGCAAGCGGGCGGGCCGGCACTACGTCATCCAGAGAGATGGGATGCG
130 AAGCCAACCGACGAAAC--G--AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* ** *
17147472 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATT
191 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
17147537 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
256 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
17147602 GACGAATCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTCT-AAATT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTT-TAAAATT
* * * *
17147666 TTTTGGGAAGGATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC
384 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17147731 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCA
449 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17147796 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTG
514 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** *
17147861 TGAGTTCTCAAGGTTTGATGAACGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATTGC
579 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
17147925 ACATCATGTGCGCACACCCCCCCGGTCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
644 ACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * *
17147990 CTTCGGTGATGCTCCAACGATGGTGTCCC-AGCGAAGAAAAATTCGGCACCAGCACATGCCCGAG
707 CTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * *
17148054 CCCAGCGTGTGCTACCACAACCCTCAGAT-TGGTCCGATCTTGGAATGGGAATGAACTCTGTATG
771 CCCAGCATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17148118 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCG
835 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17148177 CTTAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGAT-TAGTCGAGTCCCCCTCTGTGTGCTG
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTG
* * * * * * * * * * * *
17148241 CTGATCCTGCTACTGTAATCCTTGATCTGATCCGATCTTGGACTAGGAATGAACTCCATATGCCT
65 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
17148306 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGCATGCGCAAG
130 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
17148371 CCGTGGATCGATAGGGTGCTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATGCGAATGCCAT
195 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17148436 TTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
260 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
17148501 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGGTTTTTAAAATCTTTTCG
325 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCG
* *
17148566 GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
17148631 ACTCAGCTAAAAACTTGAAGTGTACAAGATATTGTGACCATTTGAAAAAGGAGTCCCCATTTCAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17148696 ACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
17148761 CTCGAGCTTTGATGAGGGATAGGCGGCCAATATAAAGGCCAAGTACCAGCACCCATCACCCATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
17148826 TATGCGCACACCCCCCGACCCCCCCGATCATC-GAAGCCCCAATGCCGTCGGTCAGGTTCTCCGG
650 TGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGG
* * *
17148890 TGATGCT----C-----T-----GACAAAGAAAAATGCGGCAGCAGCACATGCTCGAGCCCAGCA
713 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
17148941 AGTACTGCCGCAACCCTCAGTTCAGGT-CGATCTTAGAC-GGGAATAAACTTCATATGCTCAGAC
778 TGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
17149004 AGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCG
842 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17149056 CTCAGCCGGCCAGAGAGGCGGGATGAGCAAGCTGGGGATCGATCAGGTCCCCCTCTACGTGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * * * *
17149121 CGATCCTACTACCACAACCATCGGTCTGGCCTGATCTTAGACTAGGAATGAACTCCGTATGCCTG
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
17149186 AGGCAACCGACGAAACTAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCAC
131 AGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
17149251 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCTAATGC
192 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17149316 CATTTTTATGGCTTGTAAA-TCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
257 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
17149380 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATCTT
322 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTT
* ** *
17149445 TTCGGAAAGAGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAA
386 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17149510 AAAAACTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATT
451 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17149575 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTG
516 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
17149640 AGTTC-CTGAGGTTTGATGAGGGATAAGTGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCA
581 AGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17149704 CATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTTGGAACCCCAATG-CATCGATCAGGTTCT
645 CATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
17149768 CCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCTCAAGCCC
709 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
17149833 AGCATGTGTTACCGAAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG-ACTCCGTATGTTTA
774 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
17149897 GACTGGGAATGAACTTCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCG
839 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** * * *
17149952 CTCAGCCGACCAGAGGGGCGGGATGTGCAAGCCGATGATCGACCGGGTCCCCCTCTGCATGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * * * ** *
17150017 CAATCCTGCTGCCGCAGCCCTTGATCCGGTCCGATCTTAGACTTCGAATGAACTCCGTACGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* **
17150082 AGCCAACCGACGAAACGAGCAGGCAAGCGGGCGGGCGGGCTCTACGCTAGCCAGAGAGACGGGAT
131 AGCCAACCGACG-AA--A-C--G--AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
17150147 GCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTCTGCTTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
17150212 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17150277 CAAGACGACTCGTTTTCTTTTTTTTACAATTTTT-AAATCTTTTTGCGGTTCGAGATTTTTTAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCG-GATTTTTTAAA
* **
17150341 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTGTG
381 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
17150405 CACAAACAAACTCAGCTAAAAACAT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
446 CACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
17150469 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
510 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
17150534 TGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
575 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* **
17150599 TCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCCTAAT-CCACCGGTCA
640 TCGCACATCATGTGCGCACACCCCCC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* *** * *
17150663 AGTTC-CTCAACGATGCTCCGACGATGGTGCCCTGACAAAGAAAAAATGCGGCACCAGCACATGC
703 GGTTCTC-CGGTGATGCTCCGACGATGGTGCCCCGACGAAG-AAAAATGCGGCACCAGCACATGC
* *
17150727 CCGAGCCCAGCATGTGCTTCCGTAACCCTCGG-C----CCGATC-----C----AAT---CT--G
766 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
17150773 -AT-CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTG
831 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
17150834 CTCAGTCGGCCAGAGGGGAGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * ** *** * * *
17150899 CGATCCTGCTGCCACAACACTCAATCCAATCTGATCTAAGATTGGGAATGAACTCCGTATACCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
17150964 AGTCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGG-TAGAGAGACGGGCTACAC
131 AGCCAACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
17151028 AAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATAC
192 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17151093 CATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
257 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
17151158 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCCAGA-TTTTTAAAATTTT
322 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGGATTTTTTAAAATTTT
* * * ** *
17151222 TTCGGAAGGGGTTTTGGCACCAAACTTGGTAGATGTGATCAATGTATTTTTGTTGGCGTGCACAA
386 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17151287 AAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
451 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *** * *
17151352 TTAGACACTTTAATGGCTGCAAACAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGCTGTG
516 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** * * *
17151417 AGTTCTCGAGGTTTGATGAGGGATAGGTGGATATTATACGGGCCAAGTACCAGCACCCACCGCAC
581 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
17151482 ATCATGTGCGTACACCCTCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CAGGTCAGGTTCT
646 ATCATGTGCGCACACCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCT
* * * * *
17151546 CCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCGGAGCCT
709 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
17151611 AGCAAGTGCTGTCGCAA-CC-C--TC--G---G----T---C------TG-A-TCCG-AT-CTTA
774 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
17151650 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
839 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
17151705 CTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG-GCTGGGTCCCTCTCTGCGTG-TG
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTG
* * * * ** *
17151768 ACTGATCCTGCTACCACAACCCTTGGTCTGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCC
65 -CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
17151833 TAAGCCAACCAACGAAATGAACGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAAATGGC
129 TAAGCCAACCGACG--A--AAC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * * *
17151898 ATGTGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
186 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
17151963 CAGTGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGCGAAGTTTCAT
251 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * * * *
17152028 GGCAAGTCGACTCATTTTTTTATTTTTCATGATTTTTAAAACTTTTTACTGTTTGGGATTTTTTA
316 GGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GGTTCGGATTTTTTA
* *
17152093 AAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
379 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * *
17152158 TGCAAAAAAAAAGTCAGCTAAAAACTCGAAGGGTACAAGTTTTTGTGACCATTTGAAAAAAGTGT
444 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
17152223 CCCCATTTCAGACACTTGAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGA
509 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
17152288 AGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCC
574 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
17152353 ATCGCACATTATGTGCGCACAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-C-TAC--
639 ATCGCACATCATGTGCGCAC-A-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGT-CGG
** * *
17152414 -CA-G---TCAAGT--T-CTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATT
700 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
*
17152471 CCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC--G---G---TT---C--GG--TG---T--
765 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
*
17152512 G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA
830 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17152574 CTCAGCCGGCTAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * *
17152639 CGATCCTGCTGCCTCAACCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17152704 AGCCAACCGACGAAACAAGCAAGTGGGCGGGCGGGCAGGCACTACGTCGGACAGAGAGACGTGAT
131 AGCCAACCGACGAAAC--G--A----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
17152769 GCGCAAGCAGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * *
17152834 ATG-CAATTTTAGGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
17152898 CAAGACGACTCATTCTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAA
* * *
17152963 CTTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTAGCATG
382 -TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
17153027 CACAAAAAAATTTAGCTAAAAACAT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
446 CACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
17153091 CCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
510 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
17153156 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
575 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
17153221 TCGCACATCATGTGCGCACACCCCCGCCGACGCCCCCGATCG-CGAGAACCACAATGCCGTCGGC
640 TCGCACATCATGTGCGCACA-CCCC-CCGGC-CCCCCGATCGTCG-GAACCCCAATGCCGTCGGT
* *
17153285 CAGGTT-TCC---G--G-T-----GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGC
701 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * **
17153338 CCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCG
766 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
17153403 TATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAATGAAACGAGCGTACGGGCG
831 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17153466 CTCAACCGGCCAAAAGGGCGGGATGCAG-AAGCTGGGGATCGA-CTGGGTCCCCCTCTGCGTGCT
1 CTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCT
** * * * * * **
17153529 ATCGATCCTGCTACCACAAACCTCGGTCCGGTCAGATCTTATTCTGGGAATGAACTCCGTATGCC
64 GCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
17153594 TTAGCCAACCGACAAAATTAGCGGGGCGGACGGGCGGGCTTACACTACGCCGGCCAGAGAGATGG
129 TAAGCCAACCGAC-GAA--A-C-GAGCGGGCGGGCGGG----CACTACGCCGGCCAGAGAGACGG
* * * *
17153659 GATGCGCAAGCCGTGGATCGATAGCGTGGTAGGTGGGTCTAGGTACATCTTCATATTTCTTCATG
185 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * * * *
17153724 ACAATGTCATTTTTATGGGTTGTAAATTCAAACAATTGTCCCTTAAGCCTTCACCTGAAGTTTCA
250 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * * *
17153789 TGGCAAGACAACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTTGTGATTCGAGATTTTGT-
315 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTA
* * * *
17153853 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATGCTTGTATTTTTTTTGGCA
379 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
17153918 TGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
444 TGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
17153983 TCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
508 TCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
17154048 GGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCAAAATACCAGCAC
572 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
17154113 CCATCGCACATCATGTGCGTACACCCCCTCGGCCCCCCAGATCGTCAGAACCCCAATGTCGTCGG
637 CCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGG
* ** * *
17154178 TCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCGGCACATG
700 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * * *
17154243 CTCGAGCCCAGCATGTGTTGCCGTAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCC
765 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
**
17154308 GTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
830 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * ** * * * * *
17154372 CTCAACCTACCAGAAGGGCATGATGCGTAAGTCGGGGATCGATCGGGTCCCCTTCTGCATGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * * *
17154437 TGATCTTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17154502 TGCCAACCGACAAAACAAGGGAGCGAGCGGGCCGGTGGGCACTACGCCGGCCAGAGAGACGGGAT
131 AGCCAACCGACGAAAC----GAGCGGGCGGG-C---GGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
17154567 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
17154632 ATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17154697 CAAGACAACTTGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGCGGTTCAGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAA
* * * * *
17154762 TTTTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATGCTTGAATTTTTTTTTGGCATG
382 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATG
* * *
17154827 GACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAGGTGTCC
446 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
**
17154891 CCATTTCAGACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
511 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
17154956 GTGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
576 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
17155021 CGCACATCATGTGCGCACACCACTCGGCCCCCGCGATCGTCGGAACCCCAATGCCGTCGATCAGG
641 CGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* *
17155086 TTCT-C-----TG----G-CGATGGTGCCCCGACGAAGAGAAATGAGGCACCAGCACATGCCCGA
705 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * ** *
17155140 GCCCAGCATGTGCTGCTGCCACCCTTGGTCCT-GTCTAATCTTAGATTGGGAATGAACTCCGTAT
770 GCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
17155204 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTG
834 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
17155264 CTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * *
17155329 CGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17155394 AGCCAACCGACGAAATGAGCGAGCGGGCGAGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGC
131 AGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * **
17155459 AAGCTGTGGATCGATAGGGTGGTTGGTGAGTTTAGGTACATCTTCATATTTCTTCATGAAAATGC
192 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17155524 CATTTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAA
257 CA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17155589 GACGACTCGTTTTTTATTTTTCTCGA-TTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATTT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTT
* * *
17155653 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATACTTGTATTCTTGTTGGCATGCACA
385 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
17155718 AAAAAATTCAGCTAAAAACTCGATGCGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCAT
450 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17155783 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGT
515 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17155848 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
580 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
17155913 TATCATGTGCGCACACCCCCCCAGCACCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTC
645 CATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
17155978 TTCGGCT-ATGCTTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAG
708 TCCGG-TGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
17156041 CCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
771 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * **
17156106 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTTTGGGCG
836 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17156164 CTCAGCCTGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTG-GATGCTA
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG-TGCTG
** * * * **
17156228 CTAATCTTGCTACTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG-CT
65 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
17156292 AAGCCAATCGACGAAACGAACGAGCGGGCGGGTGGGCACTATGACGGCCAGAGAGACGGGATGCG
130 AAGCCAACCGACG--A--AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
17156357 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATG
191 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
17156422 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCAAGTGAAGTTTCATGGCAA
256 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
17156486 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTT
* * * * *
17156551 TCTCAGTAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
385 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
17156616 AAAAGATTCAGCTAAAAACTTGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTTCCCAT
450 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17156681 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
515 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17156746 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATCGCA
580 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
17156811 CATCATGTGCGCACACCCCCTGGGCTCCCCGATCGTCGGAACCCCAATGCTATCGGTCAGGTTCA
645 CATCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * *
17156876 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCC
709 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* **
17156941 AGCATGTACTGCTACAA-CC-C--TC--G---G-TC-----C---G-AT---CT--G-AT-CTTA
774 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
17156980 GACTGGCAATGAACTACGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTG
839 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * * *
17157035 CTTAGCCAGCCAGAGGGGCGGGATGCACAATCCGAGGATC-AGCCGGGTCCCTCTCTGCGTGTTA
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTG
* * * *
17157099 CCGATCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
65 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
17157164 AAGCCAATCGACAAAACGAGCGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGAGATGTG
130 AAGCCAACCGACGAAACGAGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * ***
17157229 CAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATG
191 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * *
17157294 CCATTTCTATGGCTTGTAAATTCATATAATGGCCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
256 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** *
17157359 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTAAAATTT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATTT
*
17157424 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCAC-
385 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
17157488 AAAAAATTGAGCTAAAAACTGGAAGGGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCAT
450 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
17157553 TTCATACACTTTAATGGCTACTAGCAGCAAACCTATAAAATTTCAAATGCTCTTTAAGGAGGTGT
515 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17157618 GAGTTCTCGAGGTTTGATGAGGGACAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCA
580 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17157683 CATCATGTGCGCACACCCCCCTGGCCCCCCTGATCGCCAGAACGCTAATGCCGTCGGTCAGGTTC
645 CATCATGTGCGCACACCCCCC-GGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** ** *
17157748 TCCGACGATGCTCCGGGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
708 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
17157813 AAGCATGTGCTGTCGCATCCCTCAGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTT
773 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
17157878 AGACTGGCAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTG
838 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** *
17157934 CTCAGTCGGCCAGAGGGGCGAGATGCACAATCCAAGGATCGATCGGGTCCCCCTCTGCGTGTTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * *
17157999 CGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
66 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17158064 AGCCAACCGACAAAACGAGCGGGCGGGGGGGCGGGCAGGCACGACGCCGGCCAGAGAGACGGAAT
131 AGCCAACCGACGAAACGAGCGGGC----GGGC--G--GGCACTACGCCGGCCAGAGAGACGGGAT
* * * **
17158129 GTGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTTATATTTCTGTGTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
17158194 ATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGA
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * ** * *
17158259 CAAGACGACTCATTTTTTATTTTTCATGATCTTCAAAACTTTTTGCGGTTCGAAATTTGTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAA
17158324 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
382 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
17158389 GC-AAAACATTCAGCTCAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
447 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
17158453 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
512 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
17158518 TGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATC
577 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
** * *
17158583 GCACATCATGTGCGCACACCCCCC-GAACCCCGACTCGTCGGAACCCCAATGCCGCCGCTCAGGT
642 GCACATCATGTGCGCACACCCCCCGGCCCCCCGA-TCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
17158647 TCTCCGGTGATGCTTCCGGCGATGGTGCCTCCGATGAAGAAACATTCGGC-CCAGCACATGCCCG
706 TCTCCGGTGATGC-TCCGACGATGGTGCC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
17158711 AGCCTAGCATGTGCTACCGGCCACCCTCGAT-TCGGTCAGATCTTAGACTAGG-ATGAACTCCGT
769 AGCCCAGCATGTGCTGCC-GCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGT
*
17158774 ATGCTTAGACTGGGAATTGAACTCTTGTATGCCTAAGTCAACCCACGAAACGAGCCGTGGCGGGC
832 ATGCTTAGACTGGGAA-TGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAG-CGT-GCGGGC
17158839 G
893 G
* ** *
17158840 CTATCAG-CGGACTAGAGGGGGCGGGATGCGCAAGCCGACGCTATCGATCGGGTCCCCACTCTAC
1 C--TCAGCCGG-CCAGA-GGGGCGGGATGCGCAAGCCG--GGGATCGATCGGGTCCCC-CTCTGC
** ** * * * ** *
17158904 GTGCCACCCGATCCTGCTGTTTAGC-GCCCTCGGTTTCGATCCTGAATCTTAGACACGAAATGAA
59 GTG-CTGCCGATCCTGCTG--CCGCAACCCTCGGTCT-GGT-CTG-ATCTTAGACTGGGAATGAA
* * * * **
17158968 CTTCGTATCCCTAAGCCAACCGACGAAACGATCGGGCAGACGGGCGGACGGGCATTACATCGGCC
118 CTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AG-CGGGCGGGCGGGCACTACGCCGGCC
* *
17159033 AGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
175 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
17159098 TTTCTGCATGCTAATGCCATTTTTATGGCTTG-AAATTCATACAATGTTCCCTTAAGCCTTCACG
240 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** *
17159162 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGCGATTTTTGAAACTTTTTATGGTTTG
305 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTC
* * * * * *
17159227 GGATTTTTTAAAATTTTTTTGAAAGGTGGTTTGGCCCCAAACTTGGTAAACGCGATCCTTGTATT
369 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
17159292 TTTGTTGGCATTCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
434 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
17159357 AAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
499 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
17159422 CTCTTTAACGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGT
564 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
17159487 ACCGGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGATTGTCGGAACCCCAATGC
629 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* * *
17159552 TGTCGGTCAGGTTCTCC----A------G-CGATGGTGCCCTGACGAAGAAAAATGTGGCACCAG
694 CGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * * *
17159606 TACATGCTCGAGCCTAGCATGTGCTACTGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAAT
759 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAAT
* ***
17159670 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAATAGACGAAACGAGCGTG
823 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
17159735 CGGGCG
888 CGGGCG
* * * * *
17159741 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* *
17159806 CGATCCTGCTGCTGCAACCCTCAGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
66 CGATCCTGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
17159870 AAGCCAACCGACGAAACGAACGGGCGGACGGGCAGGCGGGCACTACGTCGACCAGAGAGACGGGA
130 AAGCCAACCGACGAAACG-A------G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *** *
17159935 TGCGCAAGCCGTGGATCGATAGGG-GGTAGGTCGGTTTAGGCACATCTTCATATTTCTATGTGTC
187 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
17159999 AAGGGCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
252 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** * * * *
17160064 CCAAGACGACTTGTTTTCTATTTTTCAGGATTTTCAAAACTTGTTGCAGTTTGATATTTTTTTAA
317 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GA-TTTTTTAA
* * * *
17160129 AACTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCCTGTATTTTTGTTGGCAT
380 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
17160194 GCATAAAAAAATTCACCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
445 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
17160259 CCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
510 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
17160324 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCA
575 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
17160389 TCACACATCATGTGCGCA-A-ACCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA-
640 TCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * *
17160451 -------GGT--T-CTCCGACGATGGTGCCCCGACAAAGAAAAATGTGACTCCAGCACATGCCCG
704 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
17160506 AGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGAC
769 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
17160553 GTGATCCTTG
Statistics
Matches: 14710, Mismatches: 1734, Indels: 789
0.85 0.10 0.05
Matches are distributed among these distances:
865 4 0.00
866 73 0.00
867 320 0.02
868 185 0.01
869 364 0.02
870 58 0.00
871 507 0.03
872 599 0.04
873 375 0.03
874 7 0.00
875 29 0.00
876 261 0.02
877 458 0.03
878 286 0.02
879 188 0.01
880 94 0.01
881 590 0.04
882 423 0.03
883 480 0.03
884 9 0.00
885 3 0.00
886 5 0.00
887 62 0.00
888 325 0.02
889 193 0.01
890 296 0.02
891 272 0.02
892 459 0.03
893 443 0.03
894 872 0.06
895 534 0.04
896 260 0.02
897 204 0.01
898 502 0.03
899 1093 0.07
900 699 0.05
901 713 0.05
902 327 0.02
903 613 0.04
904 220 0.01
905 290 0.02
906 371 0.03
907 20 0.00
908 8 0.00
909 19 0.00
911 15 0.00
912 8 0.00
913 13 0.00
914 8 0.00
915 3 0.00
916 153 0.01
917 374 0.03
918 9 0.00
919 1 0.00
920 1 0.00
921 4 0.00
923 1 0.00
924 2 0.00
925 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
Found at i:17146328 original size:26 final size:26
Alignment explanation
Indices: 17146299--17146351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17146289 CCAATCCGAT
17146299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17146325 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17146351 C
1 C
17146352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17147222 original size:26 final size:26
Alignment explanation
Indices: 17147193--17147245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17147183 CTGGTCCGAT
*
17147193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17147219 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17147245 C
1 C
17147246 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:17149903 original size:25 final size:26
Alignment explanation
Indices: 17149869--17149918 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
17149859 TGGTCTGATC
17149869 TTAGACTGGGAATG-ACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
17149894 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17149919 CGTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:17153417 original size:26 final size:26
Alignment explanation
Indices: 17153381--17153432 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17153371 CTGGTTTGAT
17153381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17153407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17153433 TCTAAGCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17155215 original size:26 final size:26
Alignment explanation
Indices: 17155179--17155231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17155169 CCTGTCTAAT
*
17155179 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17155205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17155231 C
1 C
17155232 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17156117 original size:26 final size:26
Alignment explanation
Indices: 17156079--17156131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156069 CCGATCCGAT
*
17156079 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17156105 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17156131 C
1 C
17156132 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17157879 original size:26 final size:26
Alignment explanation
Indices: 17157850--17157901 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17157840 CGGTCTGATA
* *
17157850 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGCAATGAACTCCATATGC
17157876 TTAGACTGGCAATGAACTCCATATGC
1 TTAGACTGGCAATGAACTCCATATGC
17157902 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTCCATATGC
Found at i:17159692 original size:26 final size:26
Alignment explanation
Indices: 17159656--17159708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17159646 TCGGTCTGAT
*
17159656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17159682 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17159708 C
1 C
17159709 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17160969 original size:26 final size:26
Alignment explanation
Indices: 17160933--17160985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17160923 TCAGTCTAAT
*
17160933 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17160959 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17160985 C
1 C
17160986 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17162257 original size:26 final size:26
Alignment explanation
Indices: 17162219--17162271 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17162209 CCTGTCTGAT
*
17162219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17162245 CTTAGATTAGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17162271 C
1 C
17162272 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17163082 original size:26 final size:26
Alignment explanation
Indices: 17163053--17163103 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17163043 CCGATCCGAT
*
17163053 CTTAGACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
17163079 CTTACACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
17163104 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:17164846 original size:26 final size:26
Alignment explanation
Indices: 17164808--17164860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17164798 CCAGTCCGAT
* *
17164808 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17164834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17164860 C
1 C
17164861 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17166600 original size:25 final size:26
Alignment explanation
Indices: 17166572--17166621 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
17166562 CCAGTCTGAT
*
17166572 CTTAGACAGGAA-TGAACTCTGTATG
1 CTTAGACAGGAATTGAACTCCGTATG
17166597 CTTAGACAGGAATTGAACTCCGTAT
1 CTTAGACAGGAATTGAACTCCGTAT
17166622 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGAATTGAACTCCGTATG
Found at i:17167786 original size:902 final size:897
Alignment explanation
Indices: 17165774--17168189 Score: 3584
Period size: 902 Copynumber: 2.7 Consensus size: 897
17165764 CGAGCGTGCG
* * ** *
17165774 GGATGTGCAAGCTGGGGATCGATCGGGT-CCCCTCTGCATGCTGTCGATCTTGCTGTCGCAACCC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCTTGCTGTCGCAACCC
*
17165838 TCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
66 TCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--
*
17165903 GTGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
128 -AGCGGG-GGGTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
*
17165968 GGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
191 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
*
17166033 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
256 AAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** *
17166098 TTTTCATGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGCAGTTTGG
321 TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGCAGTTTTG
* *
17166163 GCCCGAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAA
386 GCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
17166228 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGG
451 ACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
17166293 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
516 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
17166358 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
581 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
*
17166423 CCCACCGGCCCCCCAATCTTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGC
646 CCCACCGCCCCCCCAATCTTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * * * *
17166488 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGTCGCA
711 GATGGTACCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACA
* * * * * *
17166553 ACTCTTGGTCCAGTCTGATCTTAGACAGGAATGAACTCTGTATGCTTAGACAGGAATTGAACTCC
776 ACCCTCGGTCCAATCCGATCTTAGACAGGAATGAACTCTGTACGCTTAGACAGGAAATGAACTCC
*
17166618 GTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGCG
841 GTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGCA
* * ** * * *
17166675 GGATGCGAAAGCCGAGGATCGGCCGGGTCTTCCTCTACGTGCTGTCGATCCTACTGTCGCAACCC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCTTGCTGTCGCAACCC
* * * * *
17166740 TCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTCTGCCTAAACCAACCGACGAAACGAGC
66 TCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC
* * *
17166805 GTGCAGGCGAGTGGGCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
131 G-G--GG-G-GTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
*
17166870 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGT
191 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
* * * *
17166935 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTCTCATGGCGAGACAACTCGTTTTCTAT
256 AAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * *
17167000 TTTTCATGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCAGAAGCAATTTTG
321 TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGCAGTTTTG
*
17167065 GCCCCAAACTTCGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
386 GCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
17167130 ACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGG
451 ACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
17167195 TTCCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
516 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
17167260 TGAGAGA-AGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
581 TGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
17167324 CCCC-CCAGCCCCCCCGATCATT-GGAAGCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
645 CCCCACC-GCCCCCCCAATC-TTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCC
* *
17167387 GGCGATGGTACCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
708 GGCGATGGTACCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCC
* *
17167452 ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGAAATGAA
773 ACAACCCTCGGTCCAATCCGATCTTAGAC-AGGAATGAACTCTGTACGCTTAGACAGGAAATGAA
* * * *
17167517 CTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAA-CCGGCCAGAGGGGCA
837 CTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-AAGCCGGCCAGA-GGGCA
* * *
17167579 GGATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCTACATGCTATCGATCTTGCTGCCGCAACCC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCTTGCTGTCGCAACCC
** * * *
17167644 TCGGTCTGGTTTGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCATCCGATGAAACAAGC
66 TCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC
* * * *
17167709 GGGTGGGCGGGCGTGCACTACGTCGGCCAGAGTGACAGGATGCACAAGCCGTGGATTCGATAGGG
131 GGG-GGGTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA-TCGATAGGG
* *
17167774 TGGTAGGGTGGGTTTTGGGCAGCAGTCTCATCATATTTCTCTACCCGTGCCAATGCCATTTTTAT
194 TGGTA-GGTGGG-TTTAGGCA-CA-TCT--TCATATTTCTGT----GTGCCAATGCCATTTTTAT
* * *
17167839 GGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACAGTTAAGTTTCATGGCAAGACGATTCG
249 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-AGTGAAGTTTCATGGCAAGACGACTCG
* ** **
17167904 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTTGGGA-TTTTTAAAATTCATTCGGAAG
313 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
17167968 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
378 CAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
17168033 AGCTAAAAACTCGAAGTGTAGAAGATTTTGTTACCATTTGAAAAAAAGTGTCCTCATTTCAGAAA
443 AGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACA
17168098 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
507 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
17168163 GAGGTTTGATGAGGGATAGGGGGCCAA
572 GAGGTTTGATGAGGGATAGGGGGCCAA
17168190 AGAGACGGGA
Statistics
Matches: 1354, Mismatches: 134, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
898 3 0.00
899 1 0.00
900 43 0.03
901 43 0.03
902 706 0.52
903 90 0.07
904 119 0.09
905 3 0.00
907 11 0.01
911 169 0.12
912 165 0.12
913 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (897 bp):
GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCTTGCTGTCGCAACCC
TCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC
GGGGGGTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCCC
AAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAC
CGCCCCCCCAATCTTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGG
TACCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCT
CGGTCCAATCCGATCTTAGACAGGAATGAACTCTGTACGCTTAGACAGGAAATGAACTCCGTATA
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGCA
Found at i:17168844 original size:26 final size:26
Alignment explanation
Indices: 17168815--17168867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168805 CTGGTCCGAT
*
17168815 CTTAGACAGGGAATGAATTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17168841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17168867 C
1 C
17168868 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17169748 original size:26 final size:26
Alignment explanation
Indices: 17169719--17169771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17169709 CCGGTCCGAT
17169719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17169745 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17169771 C
1 C
17169772 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17169995 original size:24 final size:24
Alignment explanation
Indices: 17169961--17170012 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
17169951 AGTGAGCGGG
*
17169961 CGGGCAATACGTCGACCGGAGGGA
1 CGGGCAATACGTCGACCGGAGAGA
* **
17169985 CGGGCACTACGTCGGTCGGAGAGA
1 CGGGCAATACGTCGACCGGAGAGA
17170009 CGGG
1 CGGG
17170013 ATGCGCAAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.44, T:0.10
Consensus pattern (24 bp):
CGGGCAATACGTCGACCGGAGAGA
Found at i:17174779 original size:877 final size:876
Alignment explanation
Indices: 17168184--17176420 Score: 9678
Period size: 869 Copynumber: 9.3 Consensus size: 876
17168174 AGGGATAGGG
* * **
17168184 GGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATACCGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * **
17168249 CATATTTCTGCGTGCCAATACCATTTTTATGGCCTACAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17168314 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATG-ATTTTCAAAACTTTTTGGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTT-AAAACTTTTTGTG
* * * *
17168378 GTTTGGGAGTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
195 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* **
17168443 GTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
* * *
17168508 ATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTC
325 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
17168573 AAATGTTCTTTAAGGTGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGC
390 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * * *
17168638 CAAGTACCAGCACCCATCAAACATTATGCGCGCACAGCCCCCCCGGCCCCCCTGATCATCGGAAC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCC-GATCGTCGGAAC
* * * * * *
17168703 CCCAATGCC-ACTGGTCAAG-T-T----C--T--CCGGCGATGGTGCCCTGGCTAAGAAAAATGC
518 CCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCCCGGCGATGGTGCCCCGACGAAGAAAAATGA
* * *
17168757 GGCACTAGCACATGCTCGAGCCCAGTC-TATGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
582 GGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAA-CC-C--T-T-G---G---TT---
*
17168821 CAGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAA
631 C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * * * *
17168886 CGAGCGTGCGGGCACTCAGTCAGCCAGAGGGGTGAGATGCGAAAGCCAGGGATTGGCCAGGTCCC
685 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * * * * * * *
17168951 CCTCTACGTACTGCTGATCCTACTACTGAAACCCTTGGTCCGAT-TCAATCTTAGACTAGGAATG
750 CCTCTACGTGCTACCGATCTTGCTACCGCAACCCTCGGTCTGATCT-GATCTTAGACTGGGAATG
* * * * * * * *
17169015 AACTTCGTGTGCCTAAACCAACCGACGAAACGAGCGGGCAGGTGGGCGGGCGAGCACTACGCC
814 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
* * * *
17169078 GGTCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCCT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17169143 CATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT-GCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * **
17169207 CACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-ATTTTCAAAACTTTATGCA
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTT-AAAACTTTTTGTG
* * *
17169271 GTTCGGGAATTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGATAGACGTGATCCTT
195 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
17169336 GTATTTTTGTTGGCATGCACAAAAAAAATTCAGTTAAAAATTCGAAGTGTACAAGATTTTGTGAC
260 GTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
* * *
17169401 CGTTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
17169466 CAAATGCTCTGTAAGGGGTTCTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17169531 -CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCCGGCCGCCCCAATCGCCGGAA
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCC-CCCCGATCGTCGGAA
* * * * * * *
17169595 CCCTAATGCCGTCGATCAGGTTCTTCGGCGATGCTCTGACGATGGTCCCCCGACGAAGAAAAATG
517 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATG
* * * *
17169660 TGGCACCAGCACATGTCCGAGCCTAGCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGA
581 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T---G---G---TT---
*
17169725 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
631 C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
17169790 TGAGCGTACGTGCGCTCAGTCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGCCCC
685 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * * *
17169855 CCTCTATGTGCAATCGATCTTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
750 CCTCTACGTGCTACCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGA
* * *
17169920 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGAGCGGGCGGGCAATACGTCGACCGGAGGGA
815 ACTCCGTATGCCTAAGCCAACCGACGAAAC----GAGCAGGC-GG------G-CG---GGCGGG-
17169985 CGGGCACTACGTC
864 CGGGCACTACGTC
* *
17169998 GGTCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
17170063 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17170128 CACGTGAAGTTTCATAGCAAGACGAC-CTGTTTTCTATTTTTCACG-ATTTTCCAAACTTTTTAT
131 CACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGAATTTT-AAAACTTTTTGT
* * ** * *
17170191 GGTTCGAGATTTTTTAAAATTTTTTCGTAAGGAGTTTTATCCGCAAACTTGGTAGACATGATCCT
194 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
17170256 TGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGA-TTTGTGAT
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
* * * * *
17170320 CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGATACTAGCAGCAAACTTATAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
17170385 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17170450 CCAAGTACCACCAGCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAAC
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAAC
* *
17170515 CCCAATGCCG-CGGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATG
518 CCCAATGCCGTC-GGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATG
* * * *
17170579 TGGCACCAGCACCTGCCCAAGCCCAACATGTGCTGCCGCAACCCTCGATCCGGTTGGATCTTAGA
581 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA----C---CC--TTGG---TT---
* * * *
17170644 CTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTCTGCCAAAGTCAACCCATGAAA
631 C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
17170709 CGAGCGTACGGGCGCTCAGTCGACCAAAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCC
685 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * ** *
17170774 CCTCT-C---C-A-TG--C-TG-T--CGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGA
750 CCTCTACGTGCTACCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGA
* * * ** * * * * *
17170827 ACTCCGTATGCCTAAG--AA--AATG-AATGA--A-ATGAGCGGGTGGGCGGGCATTATGCC
815 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
* * * *
17170881 AGCCAGAGAGACGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGTTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*** *
17170946 CATATTTCTGTATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * **
17171011 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAATGATTTTTAAAACTTTTTAAGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
*
17171076 TTCGGGATTTTTTAAAATTTTTTTGGAA-GATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
196 TTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * * *
17171140 GTACTTTTGTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGAGACA
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
* * * *
17171205 AATTGAAAAATGTGTCCCTA-TTCTAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCT
325 ATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * **
17171269 CAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGAAAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * *
17171334 CCAGGAACCAGCACCCATGGCACATCATGTGCACACACCCCCCACGGCCCCTCGATTGTCGGAAC
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGTCGGAAC
* ** * * *
17171399 CCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGACGATGCTGCCTCGACGAAGAAAAATGC
518 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATG-
* * * * * * * * *
17171464 A-GCACCGGCACATGCCTGAGCCTAGCATGTGTTGCTGCAACCCTCGG-TCTGGTCTGATCTGAG
581 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTC-GATCCGATCTTAG
* * *
17171527 ACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGTGTGCGGGCGCTCAGCCGGCC
645 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
17171592 AGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
710 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTA
* * * ** * *
17171657 CCGCAATCCTCGGTCCGGTCCAATCTTAGACTAGGAATGATCTCCGTATGCCTAAGCCAACCGAC
775 CCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
17171722 GAAACTAGCTGGCAGGCGGGCGGGCGGGCACTACGTC
840 GAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
** * * * *
17171759 GGCCAGAGAGACAAGATGCGTAAGCCATGGATCGATAGGGTGGTAGTTGGGTTTAGGTACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
17171824 CATATTTCCACGTGCCAATGCCATTTTTATTGCTTTTAGATTCATACAATGCTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * * * * * *
17171889 CACGTTAAGTTTCATGGCAAGCCGACTCATTTTTTATTTTTCATGATTTTTGAAGCTTTTTGCGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
* * * *
17171954 TTCCGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
17172019 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAATCTCATAGGGTACAAGATTTTATGAACA
261 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
*
17172084 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
326 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
17172149 AATGCTCTTTAAGGGGGTGTGAGTTCTTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGT
391 AATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17172213 CAAGTACCAGCACCCATCGTACATCATTTGCGCATA-CCCCCCGGCCCCCCCAATCGTCGGAACC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACC
*
17172277 CCAATGGCGTCGGTCAGGTTCTCC-A--A-------CGATGGTGCCCCGACGAAGAAAAAT-ACG
519 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCCCGGCGATGGTGCCCCGACGAAGAAAAATGA-G
* * * * * * *
17172331 GTACCAGCACATGCTCGAGCCCAACATGTGCTACCGTAA-CC-TGCGGTCCAGTCCGATCTTAGA
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG-GTTCGA-TCCGATCTTAGA
* * *
17172394 CTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAGACGAGCGTGCGGGCGCTCAACCGGCCA
646 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * * **
17172459 GAGGGACGGGATGCGAAAGTCGGGGATCAGCCGAGTCCACCTCTGCGTGCTACCGATCTTGCTGT
711 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTAC
* * * *
17172524 CGCAACCCTCGGTCTAAT-TCGATCTTAGACTGGCAAAGAACT-CGTATGCCTAAGCCAATCGAC
776 CGCAACCCTCGGTCTGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
17172587 GAAACGAACGGGCGGGCAGACGGGCAGGCACTACGTC
840 GAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
**
17172624 GGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
17172689 CATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
17172754 CACGTGAAGTTTCATGGCAAGAGGACTCATTTTCTATTTTTCATG-ATTTTCAAAACTTTTTATC
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTT-AAAACTTTTTGTG
* *
17172818 GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTT
195 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
17172882 GTATTTTTGTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
17172947 ATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
325 ATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17173012 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGCCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
17173076 CCAAGTATCGGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCGCTGATCG-CTGGAA
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTC-GGAA
* ** * * * *
17173139 CCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTTCGACGATGCTGCCCCGGCGAAGAAAAA--
517 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATG
** * * * * ** * * *
17173202 AAACAACAGTATTACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCCGATTCAATCTT
581 AGGCACCAG---CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGATCCGATCTT
* * * * *
17173267 AGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCATGAAATGAGCGTGTGGGAGCTCAGCCGG
643 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * * * * *
17173332 CCAGAGGGGTAGGATGAGCAAGCCGAGGATCAGTTGGGTCCCCCTCTGCGTGCTACCAATATTGC
708 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGC
* * **
17173397 TACCGTAACCCTCGGT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
773 TACCGCAACCCTCGGTCT-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
17173461 GAC---AC-A--A--CGAGCGGGCAGGCGGGCACTACTTC
837 GACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
** * *
17173493 AACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
** **
17173558 CATATTTCTGTGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
17173623 CACCTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTTGAAACTTTTT-TCG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGT-G
* * * * *
17173687 GCTCGGGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAGACATGATCCTT
195 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
17173752 GTATTTTTGTTGGCATGCAC-AAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
*
17173816 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTC
325 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
17173881 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGC
390 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
17173946 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCTCCCCCGATCATCGAAACC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACC
* *
17174011 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCCCTGGCGATGTTGCCCCGACGAAGAAAAATGAA
519 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCCC-GGCGATGGTGCCCCGACGAAGAAAAATGAG
*
17174076 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGATCCGATCTTAGACT
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGATCCGATCTTAGACT
* * *
17174141 GGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGA
648 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * ** * *
17174206 GGGGCGGGATGCCCAAGCTGGGGATCGACCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTCCCG
713 GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTACCG
*
17174271 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
778 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
17174336 ACGAGCAGGCGGGCGGGCGGGTGGGCACTACGTC
843 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
* * *
17174370 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGCTAAGGTGGTAGGTGGGTTTAGGCGCATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17174435 TATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
17174500 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
* *
17174565 TTCGGGATTTTTCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
17174630 TATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
261 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
*
17174695 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCA
326 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
17174760 AATGCTCTTTAA-GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
391 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** * *
17174824 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTTGGCCCCCCGATTGTCGGAACCAC
456 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
** * *
17174888 AATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGC
521 AATGCCGTCGGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATGAGGC
** ** * * * *
17174953 AGTATTACCATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGAATG
585 ACCAGCA-CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGATCCGATCTTAGACTG
* * * * *
17175018 GGAATGAACTTCGTATGCCTAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAG
649 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * * *
17175083 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCTTGCTACTGT
714 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTACCGC
* * * * * * *
17175148 AACGCTTGATTCGGTTC-AATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCG--G--
779 AACCCTCG-GTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17175208 -C-A-CA-ACGAGCGGGCGGGCGGGCACTACTTC
843 ACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
* *
17175238 GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCA-GAACATCT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCT
* * ** * *
17175302 TCATATTTCTATGTGCGAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCTT
65 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17175367 TCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TC
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGT-
* * * *
17175431 GGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGACCCCAAACTTGGTAGACATGATCCT
194 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17175496 TGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGC
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
17175561 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
17175626 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
17175691 CCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCTGACCCCCCCGATCGTCGGAAC
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAAC
* * * *
17175755 CCCAATGTCGTCGGTTAAGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGA
518 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-CCGGCGATGGTGCCCCGACGAAGAAAAATGA
* *
17175820 GGCACCAGCACATGCCCTAGCCCAACATGTGCTGCCGCAACCCTTGGTTCGGTCCGATCTTAGAC
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----TT--G---G---TT---C
* *
17175885 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
632 -------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * **
17175950 GAACGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCC
686 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* ** * * *
17176015 CTCTACATGCTGTCGATCTTGCTCCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAA
751 CTCTACGTGCTACCGATCTTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAA
* ** * * *
17176080 CTCCGTATGCCTAAGCCAACTGATAAAATGAGCAGACGGGCGGGCGGGCGGGCACTACGCC
816 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGTC
* * *
17176141 GGCCAAAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
17176206 CATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
17176271 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
*
17176336 TTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
196 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
17176401 TATTTTTGTTGGCATGCACA
261 TATTTTTGTTGGCATGCACA
17176421 TCATGTGCGC
Statistics
Matches: 6356, Mismatches: 810, Indels: 345
0.85 0.11 0.05
Matches are distributed among these distances:
858 99 0.02
859 3 0.00
860 3 0.00
862 3 0.00
863 7 0.00
864 218 0.03
865 317 0.05
866 212 0.03
867 4 0.00
868 467 0.07
869 679 0.11
870 251 0.04
871 6 0.00
872 11 0.00
873 8 0.00
874 7 0.00
875 106 0.02
876 393 0.06
877 430 0.07
878 567 0.09
879 6 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 287 0.05
884 265 0.04
885 8 0.00
887 2 0.00
888 1 0.00
891 1 0.00
892 1 0.00
893 217 0.03
894 275 0.04
895 164 0.03
898 2 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 7 0.00
903 285 0.04
904 253 0.04
905 3 0.00
907 52 0.01
908 8 0.00
909 2 0.00
910 2 0.00
911 1 0.00
913 1 0.00
914 1 0.00
915 2 0.00
916 1 0.00
918 4 0.00
919 369 0.06
920 191 0.03
921 140 0.02
922 1 0.00
923 1 0.00
925 1 0.00
926 2 0.00
928 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTAAAACTTTTTGTGG
TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
AATGCCGTCGGTCAGGTTCTCCGACGATGCCCGGCGATGGTGCCCCGACGAAGAAAAATGAGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTACCGCAA
CCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCAGGCGGGCGGGCGGGCGGGCACTACGTC
Found at i:17175468 original size:25 final size:26
Alignment explanation
Indices: 17175412--17175470 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
17175402 TATTTTTCAC
* *
17175412 GATTTTTGAAACTTTTTTCGGTTTGG
1 GATTTTTGAAAATTTTTTCGGTATGG
*
17175438 GATTTTTTAAAATTTTTTCGG-AT-G
1 GATTTTTGAAAATTTTTTCGGTATGG
*
17175462 GAGTTTTGA
1 GATTTTTGA
17175471 CCCCAAACTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 8 0.29
25 1 0.04
26 19 0.68
ACGTcount: A:0.20, C:0.05, G:0.22, T:0.53
Consensus pattern (26 bp):
GATTTTTGAAAATTTTTTCGGTATGG
Found at i:17175907 original size:26 final size:26
Alignment explanation
Indices: 17175878--17175930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17175868 TCGGTCCGAT
17175878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17175904 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17175930 C
1 C
17175931 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17178366 original size:26 final size:26
Alignment explanation
Indices: 17178330--17178382 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17178320 CTGATCCGAT
17178330 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17178356 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17178382 C
1 C
17178383 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17178736 original size:900 final size:897
Alignment explanation
Indices: 17176584--17180334 Score: 4833
Period size: 898 Copynumber: 4.2 Consensus size: 897
17176574 CCAGTCCGAT
* * * * *
17176584 CTTAGACTGGAAATGAACTCCGTAGGCCTAAGTCAACCCACGGAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * **** * * * *
17176649 CAGCCAGAGAGGCAGGATGCGCAAGCCAGGGATCGGTTGGGTCCCCTTCTGCGTGCTGCTGATCT
66 TGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAGTCCCCCTCTACGTGCTGC-GATCC
** * * *
17176714 TGCTGTCGCAACTCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 TGCTACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17176778 ACCGACAAAACGAGCGGGC-GG--GC--G--GGCACTATGTTGGCTAGAGAGACAGGATGCGCAA
194 ACTGACGAAACGAGCGGGCGGGCAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
* *
17176836 GCCATGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGCGCCAATGC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT--GCCAATGC
* *
17176899 CATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
17176964 ACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTGAAATTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGA-TTTTTTAAAATTT
* ** *
17177029 TTTCAGATGGAGTTTTGTTCCCAAA-CTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCAC
451 TTTC-GAAGGAGTTTTGGCCCCAAACCTT--TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17177093 AAAAAAATTCAGCTAAAAACT-GCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
513 AAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCC
* * *
17177157 ATTTTAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17177222 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCA
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
17177287 CACATCATGTGCGCACACCCGCCCCGGCCCCCCGATCGTCGGAACCCCAACGCTGCCGGTCAAGT
707 CACATCATGTGCGCA-AACC-CCCCGACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * * * *
17177352 TCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACTCCAGCACATGGCTGAG
770 TCTCCGGCGATGCTCCGGCGATGGT-CCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
17177417 CCCAGCATGTGCTGCTGCAA-CC-----CT-A---GGTC-----C---G-AT---C--CG-AT-
834 CCCAGCATGTGCTGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTATG
*
17177455 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17177520 TGGCCAGAGGGGCGGGATGCGCAAGCCAGTGATCAA-CGGGATCCCCCTCTACGTGCTGCCGATC
66 TGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAG-TCCCCCTCTACGTGCTG-CGATC
** * * * * *
17177584 CTATTGCCGGAACCCTCAG-TCTGTTCC-AGTCTTAGACAGGGAATGAACTCCGTATACCTAAGC
129 CTGCTACCGCAACCCTCAGTTC-GGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
17177647 CAACTGACGAAACGAACGGGCGGGCAGGCGGGTAGGGACCACGTCGGCCAGAGAGAGGGGATGTG
192 CAACTGACGAAACGAGCGGGCGGGCA-GCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTG
* * *
17177712 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAGTG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
17177777 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
17177842 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
386 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAA-TT
*
17177907 TTTTCAGAAGGAGTTTTGGCCCCAAACGTATTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
450 TTTTC-GAAGGAGTTTTGGCCCCAAACCT-TTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
17177972 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGT-CCGA
513 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCA
* **
17178036 TTTCAGACACTTTAATAGCTACTGGAAGCAAAGTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
578 TTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** * *
17178101 TGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCAATCGC
643 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * * * * * * * *
17178166 ACATCATGTGCGCATGCCCCCCG-CCCCTCGGTCACCGAAACCCCAATACCACCGATTAGGTTCT
708 ACATCATGTGCGCAAACCCCCCGACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17178230 CCGGCGATGCTCCGACGATTGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
773 CCGGCGATGCTCCGGCGATGGT-CCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
*
17178295 AGCATGTGCTGCCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATG
837 AGCATGTGCTGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTATG
** *
17178356 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17178421 TGGCTAGAGGGGCGGGATGCACAAGTCAGGGATCAACCGGGTCCCCCTCTACGTGCTGTCGATCC
66 TGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAGTCCCCCTCTACGTGCTG-CGATCC
* * *
17178486 TGCTACCGCAACCCTCAG-TCTGATCCGATCTTAGACTGGCAAAGAACT-CGTATGCCTAAGCCA
130 TGCTACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17178549 ACCGACGAAACGAGCGGGCGGGCAGACGGGCAGGCATTACGTCAGCCAGAGAGACGGGATGTGCA
194 ACTGACGAAACGAGCGGGCGGGCAG-CGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTGCA
*
17178614 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
17178679 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
17178744 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTAAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
* *
17178809 TCGAAAGGAG-TTTGGCCCCAAA-CTTGGTAGTCGTGATCCTTATATTTTTGTTGGCATGCACAA
453 TCG-AAGGAGTTTTGGCCCCAAACCTT--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17178872 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTACCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATT
*
17178937 TCAGAGACTTTAATGGCTACTGGCAA-CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
580 TCAGACACTTTAATGGCTACTGG-AAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17179000 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
17179065 CATCATGTGCGCACACCCCCCGACCCCGCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT
709 CATCATGTGCGCAAACCCCCCGACCCC-CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
17179130 CCGGTGATGCTCCGGCGATGGTACCTCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
773 CCGGCGATGCTCCGGCGATGGTCCCT-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * *
17179195 AGCAAGTGCTACCGCAACCCTCAGTCTAATCTGATCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * * * *
17179256 CTTAGCCTGGGAATGAACTCCATATGGCTAAGTCAACCAATGAAACAAGCGTGTGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
17179321 CGGCCAGAGGGGCGGGATGCGGAAGTCAGGGATCGACCGAGTCCCCTTCTGCATGCTGCAGATCC
66 TGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAGTCCCCCTCTACGTGCTGC-GATCC
* *
17179386 TGCTACCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17179451 CTGACCAAACGAGCGGGC-GG--GTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
195 CTGACGAAACGAGCGGGCGGGCAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAG
* * * *
17179513 TCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17179578 TTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGGAAGATG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
17179643 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTC
** * * *
17179708 GGAAGGAGTTTTGG-CTAAAACCTTGGTAGACTTGATCCTTGTATTTTTTTTGGCATGCATAAAA
455 -GAAGGAGTTTTGGCCCCAAACCTT--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17179772 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTC
*
17179837 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG--CTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17179900 TTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
17179965 TATGTGCGCACACCCCCCCGACCGCCCCAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTTC
712 CATGTGCGCA-AACCCCCCGACC-CCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
17180030 GACGATGCTCCGGCGATGGTTCCCTGGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAG
775 GGCGATGCTCCGGCGATGG-TCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17180095 CATGTGCTGTCGTAACCCTTGGTCCAATCCGATCTTAGACTAGGAATGAACTTTGTATG
839 CATGTGCTGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * * *
17180154 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGCGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * ** * * *
17180219 CT-GCCAGAGGGGCGGGATACACAAGCCAGGGATCGACCGAGTCCCTCTCCGCGTGCTACCATCT
65 CTGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAGTCCCCCTCTACGTGCTGCGATCC
* *
17180283 TGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGT
130 TGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
17180335 GTGCTTAGAC
Statistics
Matches: 2532, Mismatches: 281, Indels: 108
0.87 0.10 0.04
Matches are distributed among these distances:
870 4 0.00
871 174 0.07
872 4 0.00
875 104 0.04
876 7 0.00
877 3 0.00
878 144 0.06
879 305 0.12
880 2 0.00
881 5 0.00
882 1 0.00
885 3 0.00
890 1 0.00
893 1 0.00
894 2 0.00
896 7 0.00
897 363 0.14
898 583 0.23
899 85 0.03
900 541 0.21
901 188 0.07
902 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAACCGAGTCCCCCTCTACGTGCTGCGATCCT
GCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
TGACGAAACGAGCGGGCGGGCAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
AAGGAGTTTTGGCCCCAAACCTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGAC
ACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCAAACCCCCCGACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGGCGATGGTCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:17179266 original size:26 final size:26
Alignment explanation
Indices: 17179230--17179281 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17179220 CTAATCTGAT
*
17179230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17179256 CTTAGCCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17179282 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17180178 original size:26 final size:26
Alignment explanation
Indices: 17180128--17180180 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17180118 CCAATCCGAT
**
17180128 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17180154 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17180180 C
1 C
17180181 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17180437 original size:184 final size:184
Alignment explanation
Indices: 17180122--17180640 Score: 680
Period size: 184 Copynumber: 2.8 Consensus size: 184
17180112 CTTGGTCCAA
** *
17180122 TCCGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
17180187 CAACCCACGAAATGAGTGCGCGGGTGCTCAGCCTGCCAGAGGGGCGGGATACACAAGCCAGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
* * * * *
17180252 CGACCGAGTCCCTCTCCGCGTGCT-ACCATCTTGCTACCGCAACCCTCGGTTCGG
131 CGACCGGGTCCC-CTCTGCGTGCTGACCATCCTGCTACCGCAACCCTCGATCCGG
*
17180306 TCCGATCTTAGACTAGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * *
17180371 CAACCCGTGAAACGAACGTACGGGCGCTTAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
* *** * * *
17180436 CGACCGGGTCCCCTCTGCGTTCTGTTGATCCTGTTGCCGCAACCCTTGATCCGG
131 CGACCGGGTCCCCTCTGCGTGCTGACCATCCTGCTACCGCAACCCTCGATCCGG
* * * *
17180490 TCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTGGGAATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17180555 CAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
17180620 CGACCGGGTCCCCCTCTGCGT
131 CGACCGGGT-CCCCTCTGCGT
17180641 ACTGCCGATC
Statistics
Matches: 289, Mismatches: 44, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
183 9 0.03
184 269 0.93
185 11 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (184 bp):
TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
CGACCGGGTCCCCTCTGCGTGCTGACCATCCTGCTACCGCAACCCTCGATCCGG
Found at i:17180532 original size:26 final size:26
Alignment explanation
Indices: 17180496--17180548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17180486 CCGGTCTGAT
*
17180496 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17180522 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17180548 C
1 C
17180549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17180684 original size:184 final size:182
Alignment explanation
Indices: 17180124--17180699 Score: 647
Period size: 184 Copynumber: 3.1 Consensus size: 182
17180114 TGGTCCAATC
* *
17180124 CGATCTTAGACTAGGAATGAACT-TTGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGTC
1 CGATCTTAGACTAGGAATGAACTCCT-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
17180188 AACCCACGAAATGAGTGCGCGGGTGCTCAGCCTGCCAGAGGGGCGGGATACACAAGCCAGGGATC
65 AACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCACAAGCGA-GGATC
* * * * * * * * * * *
17180253 GACCGAGTCCCTCTCCGCGTGCTACC-ATCTTGCTACCGCAACCCTCGGTTCGGTC
128 GACCGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGCCGCAACCTTCAG-TCAGTT
* *
17180308 CGATCTTAGACTAGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * * * *
17180373 ACCCGTGAAACGAACGTACGGGCGCTTAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCG
66 ACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCACAAG-CGAGGATCG
* ** * * * *
17180438 ACCGGGT-CCCCTCTGCGTTCTGTTGATCCTGTTGCCGCAACCCTTGA-TCCGGT
129 ACCGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGCCGCAA-CCTTCAGTCAGTT
* *
17180491 CTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTGGGAATGAACTCCGTATGCCTAAGTC
1 C-GATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
17180556 AACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATC
65 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATGCACAAGC-GAGGATC
* * *
17180621 GACCGGGTCCCCCTCTGCGTACTGCCGATCCTACTGCTGCAACCTTCAGTCAATT
128 GACCGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGCCGCAACCTTCAGTCAGTT
* *
17180676 CAATCTTAGACTGGGAATGAACTC
1 CGATCTTAGACTAGGAATGAACTC
17180700 TGTATGCCTA
Statistics
Matches: 326, Mismatches: 57, Indels: 18
0.81 0.14 0.04
Matches are distributed among these distances:
183 17 0.05
184 274 0.84
185 35 0.11
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (182 bp):
CGATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATGCACAAGCGAGGATCGAC
CGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGCCGCAACCTTCAGTCAGTT
Found at i:17181415 original size:27 final size:26
Alignment explanation
Indices: 17181384--17181438 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 26
17181374 TCCGGTCTGA
*
17181384 GCTTAGACTGGGAATGAACTTCTGTAT
1 GCTTAGACTGGGAATGAAATT-TGTAT
17181411 GCTTAGACTGGGAATGAAATTTGTAT
1 GCTTAGACTGGGAATGAAATTTGTAT
17181437 GC
1 GC
17181439 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAAATTTGTAT
Found at i:17182322 original size:26 final size:26
Alignment explanation
Indices: 17182293--17182342 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17182283 GTCTGATCTT
*
17182293 AGACTGGTAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
17182319 AGACTGGGAATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
17182343 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:17182480 original size:903 final size:897
Alignment explanation
Indices: 17180470--17184326 Score: 5031
Period size: 903 Copynumber: 4.3 Consensus size: 897
17180460 TTGATCCTGT
* * *
17180470 TGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGTCTGGGAA
1 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
17180535 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC
66 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
17180600 GGGATGCACAAGCTGAGGATCGACCGGGTCCCCCTCTGCGTACTGCCGATCCTACTGCTGCAACC
131 GGGATGCACAAGCT-AGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACC
* *** * *
17180665 TTC-AGTCAATTC-AATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGA
195 CTCGA-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
17180728 -A------CGGGCAGGCACTACACCGGCCAGAGAGATGGCATGCGCAAGCCATGGATCGATAGGG
259 GAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
17180786 TGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
324 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
17180851 TTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
389 TTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
17180916 TCACGATATTCAAAACTTTTTGCGGTTCGGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTGGCT
454 TCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17180981 GCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCAACTAAAAAC
519 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAAC
* * * *
17181045 TCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTTAGACACTTTAATGGCT
583 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17181110 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
648 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
17181175 AGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACGCATCACACATCA--TGTGCGCACCCC
713 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC
* * * ** * * * * *
17181238 CCCTGGCCCCCACGATCGCCAAAACCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGCAA
778 CCCAGTCCCCC-CGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATACTCCGGCGA
* *
17181303 TGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGC
842 TGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
* *
17181359 TGCCGCAACCCTCGATCCGGTCTGAGCTTAGACTGGGAATGAACTTCTGTATGCTTAGACTGGGA
1 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGA
* * * * * *
17181424 ATGAAATTTGTATGCCTAAGTCAACCGATGAAATGAGCGTGCGGACGCTCAGCCGGCCAGAGGGG
65 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
** * ** * * * *
17181489 CGGGATGCGTAAGCTGGGGATCGGTCTGGTCCCCCTATGCGTGCTGCTGATCTTGCTACCGCAAC
130 CGGGATGCACAAGCT-AGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAAC
* * *
17181554 CCTCGAT-TCGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAT
194 CCTCGATCT-GGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
** *
17181617 GAGCAGGCGGGCGGGTGTGCGGGCACTACGGGGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATC
257 GAG-AGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
17181682 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTATGGC
317 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* *
17181747 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCATGTTTCATGGCAAGACGACTTGTTTT
382 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
17181812 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
447 CTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
17181877 TTTGGCCCCAAACTTGTTAAACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCT
512 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
17181942 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
577 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
17182007 ATGGCTATTGGCAGCAAACCTGAAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
642 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
17182072 TTCATGAGGGATAGGAGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGTGC
707 TTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
*
17182137 ACACCCCCCCAGTCCCCCCGATCGTTGGAACCACAATGCCGCCGGTCAGGTTCTCCGGTGATACT
771 ACACCCCCCCAGTCCCCCCGATCGTCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGGTGATACT
** *
17182202 TTGGCGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGC
835 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
* * * *
17182264 TGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCTCAGACTGGGAA
1 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
17182329 TGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGC
66 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** * **
17182394 AGGATGCACAAGCTAGGGTCGACCGGGTCCCCCTCTGTGTGCTGTTGATCCTGCTGCCATAACCC
131 GGGATGCACAAGCTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCC
* * *
17182459 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--TG-
196 TCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA
* *
17182521 GGCGAGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
261 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
17182586 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATT
326 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17182651 CATACAATGGTCCCTTAAGGCTTCACGTCAAGTTTCATGGCTAGACGACTCGTTTT-TAATTTTT
391 CATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTT
* * * *
17182715 CACGATTTTAAAAACTTTTTGGGGTTCGAGATTTTATAAAATTTTTTC-GAAGGAGTTTTGGCCT
455 CACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
17182779 TAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
520 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
17182844 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
585 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17182909 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
650 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
17182974 GGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC
715 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
* *** * **
17183037 CA---------A---T--G---CC-A-----CCGATCAGGTTCTCCTCCGATGCTCCAACGATGG
780 CAGTCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATACTCCGGCGATGG
** * *
17183079 TGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
845 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
* * * * *
17183132 TGCCGTAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGAA
1 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
17183197 TTAAC-TCTGTATGCTTAAGTCAACCCAC-AAACGAGCGTGCGGGCGTTTAGCCTGCCAAAGGGG
66 TGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
** * * * * *
17183260 CGGGATGCGTAAGCCGAGGATCGACCGGGTCCCCCTTTGCATGCTACCGATCCTGCTATCGCAAC
130 CGGGATGCACAAG-CTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAAC
* * * * * ** *
17183325 CCTCGATCTGATCCAATCTTAGACTAGGAATGAACTCCGTA-CCCGTAAGCCAACTGTTGAAACA
194 CCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACGAAACG
* * *
17183389 AGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCG
258 AG-AGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
17183454 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
318 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
17183519 TCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
383 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
17183584 TATTTTTCAGGATTTTTTAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
448 TATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
17183649 TTGGCCCCAAACTTGGTAGACGT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
513 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * *
17183713 AAAACTCGAAGTGTACAAGTTTTTGTGGCCATTTGAAAAAAGCGTCCCCATTTCGGACACTTTAA
578 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
17183778 TGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTT
643 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
17183843 TGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
708 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
** *
17183908 ACCCCCCC-G-CCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCC
773 ACCCCCCCAGTCCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGTGATACTCC
* * * * * *
17183971 GGCGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGTAGATGCTTGAGCCCAGCATGTAC
837 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
* * *
17184032 TGCCGCAA-CCTACGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
1 TGCCGCAACCCT-CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
17184096 ATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAGCTGGCCAGAGGG
65 ATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * * * ** *
17184160 GCGGAATGCGA-TAGCCGAGAAT-TAGCCAGGTACCCCTCTACGTGCTGTCGATCCTATTACCAC
129 GCGGGATGC-ACAAG-CTAGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * * *
17184223 AACCCTC-AGTGC-AGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAACCCAACCGATGA
191 AACCCTCGA-T-CTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
17184286 AACGAGTGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAG
254 AACGAG-AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
17184327 TTTGATGAAG
Statistics
Matches: 2597, Mismatches: 299, Indels: 136
0.86 0.10 0.04
Matches are distributed among these distances:
867 72 0.03
868 214 0.08
870 1 0.00
872 4 0.00
873 1 0.00
874 2 0.00
876 448 0.17
877 31 0.01
878 5 0.00
879 1 0.00
882 1 0.00
885 1 0.00
888 1 0.00
889 42 0.02
890 131 0.05
891 55 0.02
893 51 0.02
894 208 0.08
895 213 0.08
896 1 0.00
897 27 0.01
899 11 0.00
900 153 0.06
901 131 0.05
902 4 0.00
903 500 0.19
904 135 0.05
905 95 0.04
906 58 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GGGATGCACAAGCTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCC
TCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCC
AGTCCCCCCGATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATACTCCGGCGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
Found at i:17183187 original size:26 final size:26
Alignment explanation
Indices: 17183158--17183213 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17183148 CCGATCCGAT
17183158 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* * *
17183184 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17183210 CTTA
1 CTTA
17183214 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17184582 original size:26 final size:26
Alignment explanation
Indices: 17184546--17184598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184536 CTAGTCTGAT
17184546 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17184572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17184598 C
1 C
17184599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17184759 original size:488 final size:482
Alignment explanation
Indices: 17183840--17184810 Score: 1283
Period size: 488 Copynumber: 2.0 Consensus size: 482
17183830 GGTTCTCGAG
*
17183840 GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
1 GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTG
* * * *
17183905 CACACCCCCCCGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTC
66 CACACCCCCCCGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGCTTCTCCAGCGATGCTC
* * * * **
17183970 CGGCGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGTAGATGCTTGAGCCCAGCATGTACTGC
131 CGACGATAGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTACTGC
*
17184035 CGCAACCTACGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
196 CGCAACCTACGATCTAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
* * *
17184100 ACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAGCTGGCCAGAGGGGCGGA
261 ACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAACCGGCCAGAGGGGCGGA
* * * *
17184165 ATGCGATAGCCGAGAATTAGCCAGGTACCCCTCTACGTGCTGTCGATCCTATTACCACAACCCTC
326 ATGAGATAGCCGAGAATCAGCCAGGTACCCCTCTACGTGCTGTCGATCCTACTACCACAACCCCC
**
17184230 AGTGCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAACCCAACCGATGAAACGAGTGG
391 AGTGCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAACCCAACCGACAAAACGA----
17184295 GCGGGCGAGCGGGCACTACGCCGGCCAGAGA
452 GCGGGCGAGCGGGCACTACGCCGGCCAGAGA
* *
17184326 GTTTGATGAAGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGTG
1 GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTG
* * *
17184391 CACACCCCCCTGTCCACCCCGATCGTCGGAACCCCAATGCCACCGGTTAGCTTCTCTAGCGATGC
66 CACACCCCCCCG-CC-CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGCTTCTCCAGCGATGC
* *** **
17184456 TCCGACGATGGTGCCCCGACAAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGTT
129 TCCGACGATAGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTACT
* *
17184521 GCTGCAACCCT-C-AGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
194 GCCGCAA-CCTACGA-TCTAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
17184584 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAACCGGCCAGAGGGG
257 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAACCGGCCAGAGGGG
** * * * * * * * **
17184649 C-GAGATGAGCA-AGTTGGGGATCGGTCGGGT-CTCCCTCTGCGTG-TCGTCGATCCTGCTGTCA
322 CGGA-ATGAG-ATAGCCGAGAATCAGCCAGGTAC-CCCTCTACGTGCT-GTCGATCCTACTACCA
* * * * * *
17184710 CAACCCCC-GAT-CTGGTTCAATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACA
383 CAACCCCCAG-TGC-AGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAACCCAACCGACA
* *
17184773 AAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGA
446 AAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGA
17184810 G
1 G
17184811 ACGGGATGAG
Statistics
Matches: 422, Mismatches: 53, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
484 30 0.07
486 73 0.17
487 9 0.02
488 306 0.73
489 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (482 bp):
GTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTG
CACACCCCCCCGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGCTTCTCCAGCGATGCTC
CGACGATAGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTACTGC
CGCAACCTACGATCTAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAACCGGCCAGAGGGGCGGA
ATGAGATAGCCGAGAATCAGCCAGGTACCCCTCTACGTGCTGTCGATCCTACTACCACAACCCCC
AGTGCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAACCCAACCGACAAAACGAGCGG
GCGAGCGGGCACTACGCCGGCCAGAGA
Found at i:17185469 original size:26 final size:26
Alignment explanation
Indices: 17185440--17185495 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17185430 CCGGTCTGAT
*
17185440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17185466 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17185492 CTTA
1 CTTA
17185496 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17186372 original size:26 final size:26
Alignment explanation
Indices: 17186336--17186388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17186326 CTAGTCTGAT
17186336 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17186362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17186388 C
1 C
17186389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17187263 original size:26 final size:26
Alignment explanation
Indices: 17187227--17187282 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17187217 CCAGTCTGAT
*
17187227 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17187253 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17187279 CTTA
1 CTTA
17187283 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17189042 original size:26 final size:26
Alignment explanation
Indices: 17188991--17189046 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17188981 CCGGTCTGAT
*
17188991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17189017 CTTAGACTGGGAATGAATTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17189043 CTTA
1 CTTA
17189047 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17190787 original size:26 final size:26
Alignment explanation
Indices: 17190758--17190813 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17190748 CCGGTCTAAT
*
17190758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17190784 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17190810 CTTA
1 CTTA
17190814 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17192553 original size:26 final size:26
Alignment explanation
Indices: 17192524--17192579 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17192514 CCGGTCTGAT
*
17192524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17192550 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17192576 CTTA
1 CTTA
17192580 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17193450 original size:26 final size:26
Alignment explanation
Indices: 17193421--17193473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17193411 CCAGTCTGAT
17193421 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17193447 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17193473 C
1 C
17193474 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17193610 original size:897 final size:897
Alignment explanation
Indices: 17184326--17197032 Score: 16521
Period size: 867 Copynumber: 14.3 Consensus size: 897
17184316 CGGCCAGAGA
* * ** *
17184326 GTTTGATGAAGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGTG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * ** * * *
17184391 CACACCCCCCTGTCCACCCCGATCGTCGGAACCCCAATGCCACCGGTTAGCTTCT-CTAGCGATG
66 CACACCCCCCAG-CC-CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATG
* * * * *
17184455 CTCCGACGATGGTGCCCCGACAAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGT
128 CTCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** *
17184520 TGCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
193 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
17184585 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAACCGGCCAGAGGGGC
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * * * * * * **
17184650 GAGATGAGCAAGTTGGGGATCGGTCGGGTCTCCCTCTGCGTG-TCGTCGATCCTGCTGTCACAAC
323 GGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCT-GCCGATCCTGCTGCCGTAAC
** * *
17184714 CCCCGATCTGGTTCAATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACAAAACGA
387 CCTTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
17184779 GCGG--GCG-GGCGGGCACTACGCCGGTCAGAGAGACGGGATGAG-AAGCCATGCATCGATAGGG
452 GCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
***
17184840 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
517 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
17184905 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGGCTCGTTTTCTATTTT
582 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
17184970 TCACGAGTTTT-GAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAAGATTTTTGTC
647 TCACGA-TTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * **
17185034 CCCAAACTTGGTAGCCGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAACGCAGCTAAAAAC
711 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
17185099 TCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGACT
776 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17185164 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAG
841 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17185221 GTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
17185286 CACACCCCCCAGGCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-CTCGACGATGC
66 CACACCCCCCA-GCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGACGATGC
** ** * *
17185350 TCCGACGATGGTGCATCGGTAAAGAAAAATTTGGCACCAGCACATGCCCGAGCCTAGCATGTGCT
129 TCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
17185415 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
194 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
17185480 GAACTTCATATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCTACCGGCCAGAGGGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* ** * * * *
17185545 GGATGCGCAAG-CTGGGGATCGGCCGGGTCCCCCTCTATATGCTACCGATCTTGCTGTCGTAGCC
324 GGATGAGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACC
** * * ** *
17185609 CTCAATCTGATCCGTTCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
388 CTTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * *
17185674 CGGGCGGGCGGCGAGCACTACGTCGACCGGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT
453 CGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
17185739 GGTAGGTTGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAAAT
518 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
17185804 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
583 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** *
17185869 CAAGATTTTTTAAACTTTTTGAGGTTCGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCC
648 CACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCC
17185933 CCAAACTTGGTAGACGT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
712 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * * *
17185997 TGAAGTGTACAAGTTTTTGTGGCCATTTGAAAAAAGCGTCCCCATTTCGGACACTTTAATGGCTA
777 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17186062 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAG
842 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
17186118 GTTTGATGAAGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
17186183 CACACCCCCCCGCCCCCCGATCGTCGGAACCCC-ATGCCATCGGTTCAGGTTCTCCGATGATGCT
66 CACACCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGTCGG-TCAGGTTCTCCGACGATGCT
* * * * ** * * * *
17186247 TCGACGATAGTGCCCCGACGAAGAAAAATGCAAGCCCCAGCAGATG-TCGAGCCAAGCATGTGCT
130 CCGACGATGGTGCGCCGGCGAAGAAAAATG-TGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** *
17186311 GCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
194 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * **
17186376 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCGCTCAACCGATCAGAGGGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * *
17186441 GGATGAGCAAGTCAGGGATCGGCCAGGTCCCCCTCTACATGTTGCCGATCCTGCTGCCGCAACCC
324 GGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCC
* * *
17186506 TCGATCTGGTTCAATCTTAGACTGGAAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGA--
389 TTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * **
17186569 --ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAG-AAGCCGTGCATCGATAGAAT
454 GGACGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
17186631 GGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
518 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
17186696 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTT
583 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
17186761 CACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCC
648 CACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
17186826 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-AGCTAAAAACTC
713 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17186890 GAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGAAACTTTAATGGCTAC
778 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
17186955 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGATCTCGAG
843 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
17187010 GTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
17187074 CACACCCCCCAGGCCCCACGATCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
66 CACACCCCCCA-GCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
** * *
17187138 CCGACGATGGTGCATCGGCAAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
130 CCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
17187203 CCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
195 CCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
17187268 AACTTCATATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCTAACCGACCAGAGGGGCG
260 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AACCGGCCAGAGGGGCG
* * * *
17187333 GGATGCGCAAG-CTGGGGATCGGCCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTG-CGTAGCC
324 GGATGAGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACC
* * * *
17187396 C-TCAGTCTGATTCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAACGACGAAACGA
388 CTTGA-TCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
17187460 GCGGACGGGC-GCGGGCACTAGGTCGGCCAGAGAGACGGGATGCGTAAGCCGTAGATCGATAGGG
452 GCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
17187524 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
517 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
17187589 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
582 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
17187654 TCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTAGC
647 TCACGATTTTCAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
17187718 CCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-CTAAAAAAATTCAGCTACAAA
711 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAA
*
17187782 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
775 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * ** *
17187847 TACTGCCAGCAAACCTAT-AAATCTCAAATGCTCTTTAAGGACGTGTGATTTCTCGAG
840 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17187904 GTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACACCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
17187969 TACACCCCCCTCGGCCCCCCAGATCGCCAGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATG
66 CACA-CCCCC-CAGCCCCCCA-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * *
17188034 CTCCGACGATGGTGTGCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
128 CTCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
17188099 TGTCGTAA-CC-C--T-CGGTC----C----A----G--T----T-C-AAT-CTTAGACTGGGAA
193 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
17188138 TGAACTCAGTATGACAAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGC
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * * * * * * *
17188203 AGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGTTGCTGATCCTACTGTCGCAACC
323 GGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACC
** *
17188268 CTCAATCTGGTTCAATCTT-GACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGA-
388 CTTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* ** * * *
17188331 --G-CGGGCGG-GTGGCACTACACCGATCAGAGAGATGGGATG-GGAAGCCGTGCATCGATAGGG
453 CGGACGGGCGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
17188391 TGGTAGGTGGGCTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
517 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
17188456 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
582 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * * *
17188521 TCATGATTTTTGAAACTTTTTGCAGG-TCGAGATTTTTTAAAATTTTTTCGGAAAGATTTTTGTC
647 TCACGATTTTCAAAACTTTTTGC-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
17188585 CCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAACC
711 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17188650 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGAAACTTTAATGGCT
776 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17188715 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGATCTTGAA
841 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17188772 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTTCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
17188837 CACACCCCCCAG-GCCCCATGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
66 CACACCCCCCAGCCCCCCA--ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* ** * *
17188901 TCCGACGATGGTGCGTCGGTAAAGAAAAATTTGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
129 TCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
17188966 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
194 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
17189031 GAATTTCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAACCGGCCAGAGGGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * * * * * *
17189096 GGATGCGCAAG-CTAGGGATCGACCGGGTCCCCCTATGTATGCTGTCGATCCTGCTACTGTAGCC
324 GGATGAGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACC
* * * * * * *
17189160 C-TCAGTC-CGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAAACGACGAAACG
388 CTTGA-TCTGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
17189223 AGCGGACGGGCGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGG
451 AGCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
17189288 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
516 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
17189353 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTT
581 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
17189418 TTCACGATTTTCAAAACTTTTTGCGGTTCCG-GATTTTTTAAAATTTTTTCGGAAGAAGTTTTGG
646 TTCACGATTTTCAAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
17189482 CCCCAACCATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAA
710 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
17189547 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
775 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * ** *
17189612 TACTGCCAGCAAACCTAT-AAATCTCAAATGCTCTTTAAGGACGTGTGATTTCTCGAG
840 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17189669 GTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACACCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
17189734 CACACCCCCCCCGACCCCCCAGATCGTCGGAACCTCAATGCCGTCGGTCAGGATCTCCGACGATG
66 CACA-CCCCCCAG-CCCCCCA-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * *
17189799 CTCCGACGATGGTGTGCCGGTGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
128 CTCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * *
17189864 TGCCATAA-CC-C--T-CGGTC----C----A----G--T----T-C-AAT-CTTAGATTGGGAA
193 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
17189903 TGAACTCCGTATGCC-AGAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGG
258 TGAACTCCGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * * * *
17189967 CGGGATGAGCAAGTCGGGGATCAGCCGGGTCCCCCTCTACATGTTGTCGATCCTACTGCCGTAAC
322 CGGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAAC
* *
17190032 CCTCGATCTGGTTCAATCTT-GACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGA
387 CCTTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* ** * * *
17190096 ---G-CGGGCGG-GTGGCACTACACCGATCAGAGAGATGGGATG-GGAAGCCGTGCATCGATAGG
452 GCGGACGGGCGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
17190155 GTGGTAGGTGGGCTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
516 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
17190220 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTT
581 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * *
17190285 TTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAAGATTTTTGTC
646 TTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
17190350 CCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
711 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17190415 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGAAACTTTAATGGCT
776 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17190480 ACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGATCTCGAA
841 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17190537 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
17190602 CACACCCCCCAGGCCCCCATGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGC
66 CACACCCCCCAGCCCCCCA--ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * * * * *
17190667 TACGACGATGGTACGTCGGCAAAGAAAAATTTGGCACCAGCACATGCTCAAGCCCAGCATGTGCT
129 TCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
17190732 GCCGCAAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
194 GCCGC-AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
17190797 TGAACTTCATATGCTTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAATCGGCCAGAGGGGC
258 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * * * * * *
17190862 GGGATGTGCAAG-CTGGGGATCGGCTGGGTCCCCCTATGTATGCTGCCGATCCTGCTACCATAGC
323 GGGATGAGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAAC
* * * * * *
17190926 CC-TCAGTCT-GATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAAACGACGAAAC
387 CCTTGA-TCTGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
17190989 GAGCGGACGGGCGGCGGGCACTACGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAG
450 GAGCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
17191054 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
515 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
17191119 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATT
580 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
*
17191184 TTTCACGATTTTCAAAACTTTTTGCGGTTCCG-GATTTTTTAAAATTTTTTCGGAAGAAGTTTTG
645 TTTCACGATTTTCAAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * * *
17191248 GCCCCAAACAAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCAAAAA
709 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
17191313 ACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGG
774 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * ** *
17191378 CTACTGCCAGCAAACCTAT-AAATCTCAAATGCTCTTTAAGGACGTGTGATTTCTCGAG
839 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
17191436 GTTTGATGAGGGATTGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACACCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
17191501 CACACCCCCCCCGACCCCCCAGATCGTCGGAACCTCAATGCCGTCGGTCAGGATCTCCGACGATG
66 CACA-CCCCCCAG-CCCCCCA-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * *
17191566 CTCCGACGATGGTGTGCCGGTGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
128 CTCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
17191631 TGCCGTAA-CC-C--T-CGGTC----C----A----G--T----T-C-AAT-CTTAGATTGGGAA
193 TGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
17191670 TGAACTCCGTATGCC-AGAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGACCAGAGGGG
258 TGAACTCCGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * * * *
17191734 CGGGATGAGCAAGTCGGGGATCAGCCGGGTCCCCCTCTACATGTTGTCGATCCTACTGCCGTAAC
322 CGGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAAC
* *
17191799 CCTCGATCTGGTTCAATCTT-GACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGA
387 CCTTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
17191863 GCGG--GCG-GGC-GGTACTACGCCGGTCAGAGAGATGGGATG-GGAAGCCGTGCATCGATAGGG
452 GCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
17191923 TGGTAGGTGGGCTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
517 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
17191988 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
582 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * * * * **
17192053 TCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTTAAATTTTTTCGGAAAGATTTTTATCC
647 TCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17192118 CCAAGCATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAAC
712 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAAC
* *
17192183 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGAAACTTTAATGGCT
776 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17192248 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGATCTCGAA
841 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17192305 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** *
17192370 CACACCCCCCAG-GCCCCATGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGC
66 CACACCCCCCAGCCCCCCA--ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * * *
17192434 TCCGACGATTGTGCGTCGGCAAAGAAAAATTTGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
129 TCCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
17192499 GCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
194 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
17192564 GAACTTCATATGCTTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCAGAGGGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * * * * *
17192629 GGATGCGCAAGTTGGGGATCGACCGGGTCCCCCTATGTATGCTGTCGATCCTGCTACCGTAGCCC
324 GGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCC
* * * * * *
17192694 -TCAGTCT-GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAACAACGAAACGA
389 TTGA-TCTGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
17192757 GCGGACGGGCGGCGGGCACTAGGCCGGCCAGAGAGATGAGATGCGCAAGCCGTGGATCGATAGGG
452 GCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
17192822 TCGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGTCAATGCCATTTTTATGGCTTGTAAA
517 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
17192886 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTT
582 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
17192951 TCACGATTTTCAAAACCTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTCGGAACGAGTTTTGGC
647 TCACGATTTTCAAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
17193015 CCCAAACTTGGTAGACGTGCTCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
711 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
17193080 TTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
776 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17193145 ACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTTGAG
841 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
17193202 GTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * **
17193267 CACACCCCCCCAACCCCCCAATAATCGAAACTTCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
66 CACA-CCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * *
17193332 CCGGCGATGGTGCACCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTACTG
130 CCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
17193397 CTGCAACCCT-TGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAAT
195 CCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
17193461 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCCAGAGGGGTG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* ** ** *
17193526 GGATGAGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTATTGCCGATCCTGCTGCCGCAACCC
324 GGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCC
* * * * *
17193591 TTGATCTGGTTCAATCTTAGTCTAGGAATGATCTCCGTATGCCTAAGCCAACCGATGAAACAAGC
389 TTGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* *
17193656 GGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGAG-AAGCCGTGGATCGATA
454 GGACGGGC-GGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
17193720 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
514 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
17193785 AAATTGATACAATGGTCCCTTAAGCCTTCACGTGGAGTCTCATGGCAAGATGACTCGTTTTCATG
579 AAATTCATACAATGGTCCCTTAAGCCTTCAC-----G-----T-----GA--A---G-TTTCATG
* * * ** ** * *
17193850 GCAAGACGACACATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTAAAA
623 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAA
** * * * *
17193915 ACATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATGTTTATTGGAATG
688 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
17193980 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
753 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
17194045 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
818 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
17194110 GTGTGAGTTCTTGAG
883 GTGTGAGTTCTCGAG
*
17194125 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
17194190 CACACCCCCCAGCACACTCGATCGTCGGAACCCCAATGCCGTCGGTGAGGTTCTCCAACGATGCT
66 CACACCCCCCAGC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * *
17194255 CCGACGATGGTGC-CACGGCGAAGAAAAATATGGCACCGGCACATGCCTGAGCCCAGCATGTGCT
130 CCGACGATGGTGCGC-CGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** * *
17194319 GTCGCAACCCTCAGTCCATTTTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAAT
194 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** * *
17194384 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCGGCCGACCAGAGTGGCG
259 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
** * * * * * * * * * * *** *
17194449 AAATGCGTAATTCGAGGATCGACCGAGTTCCCCTCTGCGTGCTACCCATCCTGCTATTGCAA-CC
324 GGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCC
* * * * * *
17194513 TTCGATCCGATCCAATCTTAGACTGCGAATGAACTCCGTATACCTAAGCCAACCGATGAAACAAG
389 TT-GATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC---
* * * * * * * *
17194578 TGGGCAGACGGGCGAGCGGGCACTACACCGACCAGAGATACAGGATGCGTAAGCGGTGGATCGAT
450 -GAGCGGACGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
17194643 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT-T-TCTTG
513 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
17194706 TAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTA
578 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
17194771 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTT
643 TTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
17194836 GGCCCCAAAATTGGTAAACGTGATCCTTGTATTTTTTTTAGCATGCACAAAAAAATTCAGCTAAA
708 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
** * * *
17194901 AACTTAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATT
773 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
17194966 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTTGAG
838 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
17195026 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AGTTACCAGCACCAATCGCATATCATGTGT
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATCATGTGC
* * * * **
17195090 GCACACCCCCC-G-GCCGC---C-T--GAACCCCGATGTCACCGGTCAGG---T-------T-CT
65 GCACACCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* ** * * * * *
17195136 CCGACGATGGTGCCCCAACGAAGAAAAATGCGACATCAGCACATGCCCGAGCCCAGTATGTGCTA
130 CCGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * *
17195201 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGGACTTCGTATGCTTGGACTGGGAATG
195 CCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
17195266 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
260 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
* * * * * * * *
17195331 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCATAACCCT
325 GATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCCT
* * * *
17195396 CT-ATCTGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGC
390 -TGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* ** *
17195460 GGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGATAGGATGCGCAAGCTGTGGATCGATA
454 GGACGGGC-GGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
17195525 GGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGCAT-CACAATGCCATTTTTATGGCTTG
514 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC-CAATGCCATTTTTATGGCTTG
* * *
17195589 TAAATTCATACAATGGT-CCTCTAAGCCTTAATGTGATGTTTCATGGCAAGACGACTCGTTTTCT
578 TAAATTCATACAATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
17195653 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-GGAAGGAGTT
642 ATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTT
* * * *
17195717 TTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTA
706 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
17195782 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
771 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
17195847 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
836 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
17195909 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
17195974 CAGACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGG---T-------T-CTC
66 CACACCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* ** * * *
17196028 CGACGATGGTGCCCCAACGAAGAAAAATGTGGCACTAGCACATGCTCGAGCCCAGCATGGGCTGC
131 CGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
17196093 TGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGA
196 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
17196158 ACTCTGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGG
261 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
* * ** * * * *
17196223 AT-ACGAAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTACCGATCCTGCCGCCGCAACCCT
326 ATGA-GCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCCT
** * * * * *
17196287 TTTTCTGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGATGAAACGAGCG
390 TGATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
17196352 GGCGGGTGGGCGTGCGGGCACTAAGCCAGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAG
455 GAC----GGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
17196417 GGTGATAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GCTTGTA
515 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
17196481 AATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
580 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * * *
17196546 TTTCACTATTTTTTAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTCTGG
645 TTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
17196611 CCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAA
710 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * * *
17196676 CTCAAAGTGTAAAAGATTTTGTGACTATTTGAAAAAAATGACCCCATTTTAGACACTTTAATGGC
775 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17196741 TACTGGTAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
840 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
17196799 GGTTGATGAGGGATAGGGGGCCGATATAAGGGCTAAGTACCAGCACTCTTCGCACATCATGTGCG
1 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * *
17196864 CACACCCGCCGGCCCCCCCGATCGTCGGGACCCCGAT---GTC-GTC-GG----AC-A-GATTCT
66 CACACCCCCCAG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * *
17196918 CCGATGATGGTGC-CTCGACGAAGAAAAATGTGAC-CCGGCACATGCCCGAGCCTAGCATGTGCT
130 CCGACGATGGTGCGC-CGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
17196981 GCTGCAACCCTCGGTCTGGTC-CAGTCTTAGACTGGGAATGAACTCCCTATGC
194 GCCGCAACCCTCAGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGC
17197033 CTAAGCCAAC
Statistics
Matches: 10375, Mismatches: 1171, Indels: 537
0.86 0.10 0.04
Matches are distributed among these distances:
865 5 0.00
866 121 0.01
867 1127 0.11
868 386 0.04
869 104 0.01
870 4 0.00
871 107 0.01
872 166 0.02
873 262 0.03
874 15 0.00
875 4 0.00
876 3 0.00
877 12 0.00
878 1 0.00
879 2 0.00
880 4 0.00
881 360 0.03
882 11 0.00
883 359 0.03
884 14 0.00
885 6 0.00
886 5 0.00
887 4 0.00
888 4 0.00
889 15 0.00
890 444 0.04
891 733 0.07
892 607 0.06
893 278 0.03
894 833 0.08
895 245 0.02
896 320 0.03
897 924 0.09
898 872 0.08
899 298 0.03
900 449 0.04
901 383 0.04
902 90 0.01
905 1 0.00
907 3 0.00
912 2 0.00
917 3 0.00
919 1 0.00
922 49 0.00
923 656 0.06
924 72 0.01
926 1 0.00
927 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCGCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
ATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGTAACCCTT
GATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
ACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
Found at i:17193866 original size:21 final size:21
Alignment explanation
Indices: 17193824--17193867 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
17193814 ACGTGGAGTC
* * *
17193824 TCATGGCAAGATGACTCGTTT
1 TCATGGCAAGACGACACATTT
17193845 TCATGGCAAGACGACACATTT
1 TCATGGCAAGACGACACATTT
17193866 TC
1 TC
17193868 TATTTTTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (21 bp):
TCATGGCAAGACGACACATTT
Found at i:17194384 original size:26 final size:26
Alignment explanation
Indices: 17194344--17194396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17194334 CCATTTTGAT
17194344 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17194370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17194396 C
1 C
17194397 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17196152 original size:26 final size:26
Alignment explanation
Indices: 17196116--17196168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17196106 CCGGTTTGAT
17196116 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
17196142 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17196168 C
1 C
17196169 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17197628 original size:26 final size:26
Alignment explanation
Indices: 17197599--17197650 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17197589 CGATCCGATT
*
17197599 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
*
17197625 TTAGACTAGGATTGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
17197651 CTAACTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:17197977 original size:245 final size:246
Alignment explanation
Indices: 17197501--17197996 Score: 688
Period size: 245 Copynumber: 2.0 Consensus size: 246
17197491 AGGTTCTCCA
** **
17197501 GCGATGCTCCGATGATGGTGCGTCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGC
1 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCAAGCCCAGC
* * *
17197566 ATGTGCTGCCGCAACCCTCGATCCGATCCGATTTTAGACTGGGAATGAACTCCGTATGCTTAGAC
66 ATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * *
17197631 TAGGATTGAACTCCGTATGCCTAACTCAAACCATGAAACAAGCGTGTGGGCGCTCAGCCGGCCAG
131 TAGGAATGAACTCCGTATGCCTAACTCAAACCACGAAACAAGCATGCGGGCGCTCAACCGGCCAG
* *
17197696 AGGGGTGGGATGCGCAAGCCGGGGCTTGACCGGGTCCCCCTCTACGTGCTG
196 AGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
* * * * *
17197747 GCGATGCTCCGGTGTTGGTGCCCCGATGAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAGC
1 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCAAGCCCAGC
* * * * *
17197811 ATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTGGAC
66 ATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * *
17197876 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCGGCCAG
131 TAGGAATGAACTCCGTATGCCTAACTCAAACCACGAAACAAGCATGCGGGCGCTCAACCGGCCAG
* ** *
17197941 AGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
196 AGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
*
17197992 TCGAT
1 GCGAT
17197997 CCTGCTACCG
Statistics
Matches: 217, Mismatches: 33, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
245 192 0.88
246 25 0.12
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (246 bp):
GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCAAGCCCAGC
ATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
TAGGAATGAACTCCGTATGCCTAACTCAAACCACGAAACAAGCATGCGGGCGCTCAACCGGCCAG
AGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
Found at i:17198773 original size:26 final size:26
Alignment explanation
Indices: 17198735--17198787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198725 CCAGTCCAAT
*
17198735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17198761 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17198787 C
1 C
17198788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17200529 original size:26 final size:26
Alignment explanation
Indices: 17200493--17200545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17200483 CCAGTTTGAT
* * *
17200493 CTTAGACTGGGAATGCACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17200519 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17200545 C
1 C
17200546 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17201425 original size:26 final size:26
Alignment explanation
Indices: 17201395--17201452 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
17201385 CCGATCTGAT
*
17201395 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17201421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17201447 CCTAGA
1 CTTAGA
17201453 TCAACCCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17201595 original size:902 final size:898
Alignment explanation
Indices: 17197748--17210620 Score: 14969
Period size: 899 Copynumber: 14.4 Consensus size: 898
17197738 TACGTGCTGG
** * * *
17197748 CGATGCTCCGGTGTTGGTGCCCCGATGAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
17197812 TGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTGGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
17197877 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
17197942 GGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCG
196 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* ** ** *
17198007 TAACCCTCTATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
261 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * *
17198072 ACGA--------GC-GGGCGGGCACTACATCGGCCAGAGAAACGGGTTGCGCAAGCCATGGATCG
326 ACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
17198128 ATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCGA-GCCAATGCCATTTTTACGCC
391 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGC
* * **
17198192 TTGTAAATTCACACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGTTAAGACGACTCGTTTT
455 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
17198257 TTATTTTTCATGATTTTTGAAACATTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
520 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
17198322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCT
585 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCT
*
17198387 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
17198452 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
17198517 TTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAAATCATGTGCGCA
779 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
17198582 CACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA
844 CACCCCCC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* *
17198639 CGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
17198704 CGTGCTGCCGTAACCCTCGGTCC-AGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAG
66 TGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
17198768 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCTTACGGGCGCTTAGACGGCCAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * *
17198833 AGGCGCGGGATGCGTAAGCCGGGGATC-AGTCGGGTCCCACTTTGCGTGCTGCCGATCATGCTGC
195 AGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
** * *** * *
17198897 CATAA-CCTTGGTTATGTCC-AGTCTTAGACTGGGAATGAACTCCCTATGCCTAA-CCAACCGAT
259 CGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
17198959 GAAACGAGCGGAAGGGCGGGC-GGGCGGGCACTACGCCGGCTAGAGAGATGGGATGCGCAAGCCA
323 GAAACGAGC----GGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
17199023 CGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
384 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
17199088 TATGGCTTGTAAATTCATACAATGCTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACC
449 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
17199153 CGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
514 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
17199218 AGGAGTTTTTGCCCC-AACTGGGTAGACGTGATCCTTGTATTTTTG-TGCCTTGCACAAAACATT
579 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAT
* *
17199281 TCAGCT-AAAAGTCAAAGTGTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
643 TCAGCTAAAAACTCGAAGTG-TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
17199345 CACTTTAATGGCTACTGG-ATGCAAACCTGTAAAATCTTAAATGCTCTTTAAGTGGGTGTGAGTT
707 CACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17199409 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGAGCACCCACCGCACCA
771 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CC-AGCACCCATCGCA-CA
* * *
17199474 TCAAGGTTGTGCACACCCCCCGCGCCCCCCGATCGTCCGAGAA-CCCAATG-CG-CTAGTCAGGT
833 TC-ATG-TGCGCACACCCCCCG-GCCCCCCGATCGT-CG-GAACCCCAATGCCGTC-GGTCAGGT
*
17199536 TCT---T
892 TCTCCGA
* ** *
17199540 CGTTGCTCCGGGGATGGTGCCCCGGCGAAGAAAAAT-----A-CAGCACA-G--C-A----A--A
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
17199589 --TGC--CCG-AAACC-CAG-CAGGT-C-ATCTTAGACT--GAATG-TCT-TGTAT-CTTA-ACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
17199639 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGTTCAGCCGGCC-GA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* *
17199703 GGGGCGGGATGCGCAAGTC---GATCTATCGGGGT-CCCCTGCT-CGTG-TG-CGAT--TG-TGC
196 GGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTGC
* * * * * * *
17199758 TGTAACCCT-TGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGATG
259 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
17199822 AAACGA----GCGGG-TGGGTGGTCACCACGCCGGCCAGAGAGACGGGATGTGTAAGCCGTGGAT
324 AAACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
17199882 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCATTTTTATGG
389 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
17199947 CTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
454 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
17200012 TCTATTTTTCACGGTTTTCAAAACTTTTTACTGTTCGGGATTTTTTAAAATATTTTCGGAAGGAG
519 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
17200077 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATCAGCT
584 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCT
17200142 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
17200207 ATGGCTACTGGCAGCAAACGTGTAAAATCTTAAATGCTCTTTAAGAGAGTGTGAGTTCTTGAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
17200272 TTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
779 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
17200337 CACCCCCTCCCCGGCCCCCCCGATCG-CAAGAACCCCAATGCCGTTGGTTAGGTTCTCCGG
844 CA---CC-CCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * ** *
17200397 TGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** ** * *
17200462 TGTGCTGTCGCAACCCTCTATCC-AGTTTGATCTTAGACTGGGAATGCACTCTGTATGCTTAGAC
66 TGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * *
17200526 TGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGTGCTTAGTCGGCCAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
17200591 AGGGGTGGGATGCGCAAGCCGGGGATC-AGTCGGGGCCCCGTCCGCATGCTGCCGATCCTACTAC
195 AGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * * * *
17200655 CACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
259 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
17200720 AAATGAACGGGCGGACGGATGGTCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
324 AAACGAGCGGGCGGGCGG--GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
17200785 GATTGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
386 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
17200849 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
451 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * * *
17200914 TTTTTTATTTTTCACGATTTTCAAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
516 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* ** * * * *
17200979 GAGTTTTGGCCCTAAACTTCATAGACGTTATCCTTGTATTTTTTTTGGAATGCATAAAAAAGTTC
581 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTC
*
17201044 AGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
645 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
17201109 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTAG
710 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * * * *
17201174 AGGTGTGATGGGGGATAGGGGCCCAATATAAGGGCCAGGTACTAGCAGCCATCGCACATCTTGTG
775 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
17201239 CGTACACCCCCTGGCTCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
840 CGCACACCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* *
17201299 CGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
17201364 TGTGCTACCGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
17201429 GGGAATGAACTCCGTATGCCT-AGATCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAGGCCAG
131 GGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * * * *
17201493 AGGCACGGGATGCACAAACCGGGCATCGATCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCT
195 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * * *
17201558 GCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGATGA
260 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * * * *
17201623 AACGA----ATGAGC-GGGCGGGCACCACGCCGACCAGAGAGAAGGGATGCGCAAGCCGTGGATC
325 AACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
17201683 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTCTGGC
390 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
17201748 TTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
455 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
17201813 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTGAAATTTTTTCGGAAGGGGT
520 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* ** * * *
17201878 TTTGGTCCCAAACTTCTTAGATGTGATCCTTGTATTTTTGTTGGCTTCCACAAAAACATTCAGCT
585 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCT
* * *
17201943 AAAAACTTGAAGGGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
17202008 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
17202073 TTGATGAGGGATAAGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACACCACGTGCGCA
779 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * **
17202138 TACCCCCCCGACCCCCCCGATCG-CTGGAACCCCAGTGCCGTCGGTCAAGTTCTCTGGCCCCC
844 CA-CCCCCCG-GCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTC-AGGT-TCT---CCGA
* * * ***** * ** **
17202200 CGAT-CGT-CGAAACCCCAAT-GT-CGCCGATC-AGGTTCTCTGGCGATGCTCTGGCGATGGTGC
1 CGATGC-TCCG--A---CGATGGTGCCCCGA-CGAAGAAAAAT-GCG--GCACCAGC-A-CATG-
** * ** * * *
17202260 CCCAGTGAAGAAAAATACAGCACCAGCACATGCC-CAAGCCTAGCATGTGGTGCCGTAACCCTCA
53 CCC---G-AG-----CCCAGCA--TGTGC-TGCCGCAA-CC---C-T-CGGT-CCG--ATCC-GA
** * * * * *
17202324 GTCCGGTCCGGTCAT-AGACTGGGAATGAACTTCGTATGCTTCGACTGGGAATGAACTTCGTATG
96 -T-C--T-TAGAC-TGGGA---A---TGAACTCCGTATGCTTAGACTGGGAATGAA---C---T-
* * * * *
17202388 CTTCGACTGGGAATGAACTCTGTATGCCTGAGTCAACCCACAAAATGAACGTACGGCCGCTCAGC
142 C--CG--T----ATG--C-C--TA------AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** ** * *
17202453 CAGCTGGAGGGATGGGATTTGC-A-------A--G-TCGGGTCCCCCTCTTCGTGCTGCTGATCC
188 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
17202507 TGCTGCCGCAACCCTCATTCCGGTCCAATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAA
253 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17202572 CCGACGAAAAGAGCGGGCGGG-TGGGTGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCC
318 CCGACGAAACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
17202636 TTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTT
383 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* **
17202701 TTATGGCTTGAAAATTCATATTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
448 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
17202766 TCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGG
513 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
17202831 AAGGAG-TTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTAGGCAAGCATAAAAAAA
578 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAA
* * *
17202895 TTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGA
642 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
17202960 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGCTGTGAGTTC
707 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17203025 TCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
772 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
17203090 ATGCGCATACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGTCGCCGGTCAGGTTCT-C--
837 GTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* *
17203150 CG--G-T-----GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * **
17203207 TGTGCTATCGCAACCCTCGGTGCGGTCCTATCTTAGACTGGGAATGAACTCTATATGCTTAGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
17203272 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * * * * * ** *
17203337 GGGGCGGGATGCATAAGACAGGGATCGACCGGGTACCCCTCTACGTGCTGTCGATCCTATTGCCT
196 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * * *
17203402 CAACCTTCGGTCCAGTCTGATCTTAGACT-AGAATGAACTCCGTATGCCTAATCCAACCGACGAA
261 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17203466 ACGAGCGGTCGATCGGGC-AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGT
326 ACGAGCGG--G--CGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
17203530 ATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
387 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
17203595 GGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGT
452 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * * * *
17203660 TTTCTATTTTTCACGATTTTCAAAAATTTTTACGGTTTGAGATTTTTTTAAATTTTTTCGGAAGG
517 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
17203725 TA-TTTTGGCCCCAAACTTGGTACACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTC
582 -AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTC
*
17203789 AGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
645 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * * *
17203854 TTTAATTGCTACTGACAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGTTGTGAGTTTTTG
710 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
17203919 AGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAATACCAGCACCCATCGTACAACATGTG
775 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
17203984 CGCACA---------CCCCC---C-TCGG----CC-A-------GG--A---TCTCCGA
840 CGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* ** * * *
17204013 CGATACTTTGGCGATGGTGTCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * * *
17204078 TGTGCTATCGCAACCCTCGATCTGGTCCGGTCTTAGACTGGGAATGAACTCCATATGCTTAGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
17204143 GGGAATGAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGTGTGTTCAGCCGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * *
17204208 GGGGCGGGATGCGTAAGCCGGGGATCG-GCTGGGTCCCCAACTGCGTGCTACCGATCCTGCTGTC
196 GGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * * * *
17204272 GCAACCCTTGGT-GGGTCTGATCTTATACTAGGAATGAACTACGTATGCCTAAGCCAACTGACGA
260 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
17204336 AACAAGCGGGCGGGCGAGCAGGCGGCCGGGCATTATGCCGGCCAGAGAGATGGGATGCGCAAGCC
325 AACGAGCGGGC--G-G-GC-GG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
17204401 GTGGATCGATAGGGTGGCAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
383 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
17204466 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
448 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
17204531 TCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTGTTAAAATTTTTTCGG
513 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * ** *
17204596 AAGGGGTTTTGGCCCCAAACTTGGTAGAAGAGATCCTTGTATTTTTGTTGGTGTGCGCAAAAAAA
578 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
* * *
17204661 TTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGA
642 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** * *
17204726 CACTTTCCTGGCTACTGGTAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTC
707 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17204791 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
772 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * *
17204856 GTGCACACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCAGTCAGGTTCTTCGA
837 GTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * *
17204919 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
17204984 TGTGCTGCCGCAACCCTTGGTCCAATCCGATCTTAGACTAGGAATGAACTCTGTACGCTTAGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
17205049 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGTGCTCCGCCGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * **
17205114 AGGACGGGATGCGCAAGCCGGGGATCGATCGGGTCCTCCTCTATC-TGCTGCCGATCCTACTATC
196 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTGCC
** * * * * *
17205178 GCAACCCTCATTTCTGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
260 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
17205243 AACGAGCGGGCAGGC-GGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
325 AACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * * * **
17205307 TATAGCGTGTTAGGTGGCTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGTT
390 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
17205372 TTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGCAAGACGACTCGTTTT
455 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * **
17205437 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTCGTTAAAATTTTTTCGGAAGGAGT
520 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
17205502 TTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCGTGCACAAAACAATTCAGC-
585 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCT
*
17205566 AAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTT
649 AA-AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17205631 ATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTCAAGGGGGTGTGAGTTCTCAAG
713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAG
* * *
17205695 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGTGTG
777 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
17205760 CACAACCCCCCGGCCCCTCGATCGTCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGG
842 CAC-ACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * ** *
17205818 CGATGCTCCGGCGATGCTCTGGCGATGGTCCCCCGGCAAAGAAAAATGCTACACCAGCACATGCT
1 CGATGCT-C--CGA--------CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
17205883 CGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCAT
55 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
17205948 ATGCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTCCGGGCGCTC
120 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * * * * * * **
17206013 AACCGACCAGAGGGGCGAAATGCGTAAGCTGAGGTTCGATTGGGTCCCCCGCTACGCACTGCCGA
185 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* ** * * * * * *
17206078 TCCTGCTACCGTTACCCTCAGTCTGATCCAATCTTAGATTAGGAATGAACTCCGTATGCCTAAGC
250 TCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
17206143 CAACCGATGAAACGAGCGGGTGGGC-GGGCAGGCAGTAAGTCGGCCAAAGAGACGAGATGCGCAA
315 CAACCGACGAAACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
17206207 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATTCTACATGCCAGGGCC
380 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCATGCCAATGCC
* *
17206272 ATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGA
444 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
17206336 CGACTCATTTTCTGTTTTTCACGATTTTTGAAACTTTTTGTAGTTCAGGATTTTTTAAAATTTTT
509 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * * *
17206401 TTGGAAAGAGTTTTGGCCCAAAACTTGGTAGACGAGATCCTTGTATTTTTCTTGGCATGCACAAA
574 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--A
*
17206466 AAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCAT
637 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCAT
* * *
17206531 TTCAGACACTTTAATGGGTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGGGT
701 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
17206596 GAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTATCAGC-CCGCATCGC
766 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGC
* * * * * *
17206659 AAATCATGTCCGCATACCCCCCGACCACCCTGATCGTCGGAACCCCAATACCGTCGGTCAGGTTC
830 ACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
17206724 TCCGA
894 TCCGA
* ** * *
17206729 TGATGCTCCGGTGATGGTTCCCCGAACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA-C
1 CGATGCTCCGACGATGGTGCCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** * * * * *
17206793 AAGTGCTATCACAACCCTCGGTTCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGAC
65 ATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
17206858 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* ** * * * * * *
17206923 AGGGGCGGGATGCGTAAGCTTGGGATTGGTCAGGTCCCTCTCTGTGTGCTGCCAATCCTGCTGCC
195 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
** * * *
17206988 GCAACCCTCGGTTTGGTCCGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAATCGACGA
260 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
17207053 AACGAGCGGGTGGGC-GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGTAAGCTGTGGATC
325 AACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
17207117 GATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACAAG-CAATTGCCATTTTTATGG
390 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGG
*
17207181 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTT
454 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
17207246 TCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGAG
519 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * * *
17207311 TTTTGGCCCCAAAGTTGGTAGATGTGATCCTTTTATTTTTATTGACATGCACAAAAAAAATTCAA
584 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAATTCAG
*
17207376 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
647 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17207441 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAG
712 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
17207506 GTTTGATGAGGGATAAGGGGCGAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
777 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
17207571 CACACCGCCCC-GCCCCCCAATCGCCGGAACCCCAATGCCGCCGGCCAGGTTCTCCGG
842 CACACC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
17207628 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAATTGTGGCACCAGCACATGCCCAAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * ** *
17207693 TGTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGCAAATGAACTCCGTATACTTAGACT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
17207758 GGGAATGAACTCCGTATGCCTATGTCAACCCGCAAAACGAGCGTGCGAGCGGTCAGCTGACCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * *
17207823 GGGGCGGGATGGGCAAGCCGAGGATTGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGCCG
196 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * *
17207888 CAACCCTTGGTCCGGTCCGGTCTTAGACTGGGAATGAACT-CATATGCCTAAGCCAACCGACGAA
261 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
17207952 ACGA-C---CGGG-TGGACGGGCACTACGCCGGCCAGAAAGATGGGATGCGCAAGTCGTGGATCG
326 ACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * **
17208012 ATAGGCTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
391 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
17208077 TGTAAATTCATACAATGCTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGACGACTCATTTTC
456 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * * * *
17208142 TATTTTTCAGGATTTTCAAAAATTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
521 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
17208207 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTATTTTGGCATGCACAAAAAAATTCAGCT
586 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCAC-AAAAAATTCAGCT
17208272 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
17208337 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
17208402 TTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACATTATGTACGCA
779 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
17208467 CACCCCCCCGACCCCCTCGATCGCCGAAAACCCAATGCTGTCGGTTAGGTTCTCCGA
844 CA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* ** ** * * *
17208524 CGATGCTCCGGCGATGGTGCCCCGGGGCTGAAAAATACGGCACCAACACATGCTCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
17208589 AGTGCTACCGTAACCCTCGGTCCGGTCCGATCGTAGATTGGGAATGAACTCTGTATGCTTAGATT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
17208654 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGCCGCTCAGCCGGCCAG
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * **
17208719 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGGCCCCTTCTACGCGGTGCCAATCCTGCTATC
195 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* *
17208784 GCAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
260 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
17208849 AACAAGCGGGCGGGC-GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
325 AACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
***
17208913 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
390 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
17208978 CTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTT
455 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
17209043 TTATTTTTCAGGATTTTTGAAACTTTTTGCGCTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGT
520 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
17209108 TTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGCT
585 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCT
* * * * *
17209173 AAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTTAGACACTTTA
649 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
17209238 ATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCCAGGT
714 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* ** *
17209303 TTGATGAGGGACAGGGGGCCAATATAAGCACCAAGTACCAACACCCATCGCACATCATGTGCGCA
779 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * ** *
17209368 CACCCCCCCGCCCCCCGATCGTCGAAACCTCAATGTTGTCGGTCAGGTTCTCCAA
844 CACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * *
17209423 CGATGCTTCAACGATGGTGCCCCGGA-GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAAC
1 CGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
17209487 ATGTGCTGCCGCAACCCTCAGTCCGGTCCGGTCCGATCATAGACTGGGAATGAACCCCGTATGCT
65 ATGTGCTGCCGCAA-CC-C--T-CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
17209552 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGTGCTCAGCCG
125 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * *
17209617 GCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGACCGGGT--CGC-C--C-T-CTG-C-A---TG
190 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
17209670 CTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
255 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
17209735 GACAAAATGAGCGGGCAAGCGG-GCGGGCGGGCACTACGTCGGCCAAAGAAACGGGATGCGCAAG
320 GACGAAACGAGCGGGC--G-GGCG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
17209799 CCGCGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
381 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
17209864 TCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
446 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
17209929 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTC
511 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * ** *
17209994 -AAAGTAGTTTTACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAA
576 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
17210058 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
640 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
**
17210123 GACACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGTGTGAGT
705 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17210186 TCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
770 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17210251 ATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
835 ATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
17210316 CGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
17210381 TGTGCTGCCGCAACCCTCGGTCC-A---G-TC-----C-------G-A-T-C---T-C--AGATT
66 TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
17210420 GGGAATGAACACCATATGCCTAAGTCAACCCACGAAATGAGCATACGGGCACTCAGCCGACCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * *
17210485 GGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTG
196 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * * * * * * *
17210550 CATCCCTCGGTCCGGTTCGATGTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAA
261 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
17210615 ACGAGC
326 ACGAGC
17210621 ATTCGGGCGC
Statistics
Matches: 10278, Mismatches: 1348, Indels: 729
0.83 0.11 0.06
Matches are distributed among these distances:
850 7 0.00
851 2 0.00
852 8 0.00
853 21 0.00
854 263 0.03
855 182 0.02
856 25 0.00
857 32 0.00
860 3 0.00
861 44 0.00
862 114 0.01
863 10 0.00
864 8 0.00
865 6 0.00
866 16 0.00
867 9 0.00
868 2 0.00
869 23 0.00
870 73 0.01
871 269 0.03
872 5 0.00
873 5 0.00
874 72 0.01
875 445 0.04
876 59 0.01
877 7 0.00
878 8 0.00
879 3 0.00
880 6 0.00
881 8 0.00
882 12 0.00
883 5 0.00
884 8 0.00
885 9 0.00
886 45 0.00
887 60 0.01
888 63 0.01
889 23 0.00
890 243 0.02
891 375 0.04
892 297 0.03
893 121 0.01
894 670 0.07
895 658 0.06
896 210 0.02
897 130 0.01
898 154 0.01
899 989 0.10
900 769 0.07
901 319 0.03
902 851 0.08
903 77 0.01
904 111 0.01
905 257 0.03
906 467 0.05
907 60 0.01
908 8 0.00
909 5 0.00
910 515 0.05
911 157 0.02
912 104 0.01
913 6 0.00
914 2 0.00
916 2 0.00
917 3 0.00
918 6 0.00
919 1 0.00
920 4 0.00
921 5 0.00
922 4 0.00
923 5 0.00
924 1 0.00
925 6 0.00
926 4 0.00
927 3 0.00
929 2 0.00
930 3 0.00
931 2 0.00
932 1 0.00
934 4 0.00
935 6 0.00
936 2 0.00
937 4 0.00
938 2 0.00
939 5 0.00
940 8 0.00
941 27 0.00
944 1 0.00
947 2 0.00
948 1 0.00
950 4 0.00
952 2 0.00
956 97 0.01
957 4 0.00
958 36 0.00
959 233 0.02
960 229 0.02
961 1 0.00
966 1 0.00
967 40 0.00
968 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
Found at i:17202214 original size:45 final size:45
Alignment explanation
Indices: 17202150--17202240 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
17202140 CCCCCCCGAC
* * * *
17202150 CCCCCCGATCGCTGGAACCCCAGTGCCGTCGGTCAAGTTCTCTGG
1 CCCCCCGATCGCTGAAACCCCAATGCCGCCGATCAAGTTCTCTGG
* *
17202195 CCCCCCGATCG-TCGAAACCCCAATGTCGCCGATCAGGTTCTCTGG
1 CCCCCCGATCGCT-GAAACCCCAATGCCGCCGATCAAGTTCTCTGG
17202240 C
1 C
17202241 GATGCTCTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.15, C:0.41, G:0.24, T:0.20
Consensus pattern (45 bp):
CCCCCCGATCGCTGAAACCCCAATGCCGCCGATCAAGTTCTCTGG
Found at i:17202376 original size:26 final size:26
Alignment explanation
Indices: 17202340--17202414 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
17202330 TCCGGTCATA
17202340 GACTGGGAATGAACTTCGTATGCTTC
1 GACTGGGAATGAACTTCGTATGCTTC
17202366 GACTGGGAATGAACTTCGTATGCTTC
1 GACTGGGAATGAACTTCGTATGCTTC
17202392 GACTGGGAATGAAC-TCTGTATGC
1 GACTGGGAATGAACTTC-GTATGC
17202415 CTGAGTCAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 2 0.04
26 46 0.96
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (26 bp):
GACTGGGAATGAACTTCGTATGCTTC
Found at i:17203289 original size:26 final size:26
Alignment explanation
Indices: 17203238--17203290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17203228 GCGGTCCTAT
*
17203238 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17203264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17203290 C
1 C
17203291 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17205828 original size:11 final size:11
Alignment explanation
Indices: 17205812--17205844 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17205802 CGGTCAAGTT
17205812 CTCCGGCGATG
1 CTCCGGCGATG
17205823 CTCCGGCGATG
1 CTCCGGCGATG
*
17205834 CTCTGGCGATG
1 CTCCGGCGATG
17205845 GTCCCCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.33, G:0.36, T:0.21
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:17206861 original size:26 final size:26
Alignment explanation
Indices: 17206825--17206877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17206815 TCGGTCTGAT
*
17206825 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17206851 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17206877 C
1 C
17206878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17207764 original size:26 final size:26
Alignment explanation
Indices: 17207724--17207774 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17207714 CTGGTCCAAT
17207724 CTTAGACTGCAAATGAACTCCGTATA
1 CTTAGACTGCAAATGAACTCCGTATA
**
17207750 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGCAAATGAACTCCGTAT
17207775 GCCTATGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGCAAATGAACTCCGTATA
Found at i:17208658 original size:26 final size:26
Alignment explanation
Indices: 17208622--17208672 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17208612 GGTCCGATCG
17208622 TAGATTGGGAATGAACTCTGTATGCT
1 TAGATTGGGAATGAACTCTGTATGCT
17208648 TAGATTGGGAATGAACTCTGTATGC
1 TAGATTGGGAATGAACTCTGTATGC
17208673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCTGTATGCT
Found at i:17209562 original size:26 final size:26
Alignment explanation
Indices: 17209526--17209576 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17209516 GGTCCGATCA
17209526 TAGACTGGGAATGAACCCCGTATGCT
1 TAGACTGGGAATGAACCCCGTATGCT
* *
17209552 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACCCCGTATGC
17209577 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACCCCGTATGCT
Found at i:17210683 original size:159 final size:159
Alignment explanation
Indices: 17210388--17210779 Score: 509
Period size: 159 Copynumber: 2.5 Consensus size: 159
17210378 GCATGTGCTG
* * ** * *
17210388 CCGCAACCCTCGGTCCAGTCCGATCTCAGATTGGGAATGAACACCATATGCCTAAGTCAACCCAC
1 CCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
*
17210453 GAAATGAGCATACGGGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
66 GAAACGAGCATACGGGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
* *
17210518 TCCCCCTCTGCGTGCTGTCGATCCTGCTA
131 TCCCCCTCTGCATGCTGTCGATCCTACTA
* * * *
17210547 CTGCATCCCTCGGTCCGGTTCGATGTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
1 CCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
* * * * ** * * * *
17210612 GAAACGAGCATTCGGGCGCTTAGCCGGA-CGGAGGGGTGGGATGCGTAAGTCGGGGATTGGTCGG
66 GAAACGAGCATACGGGCACTCAGCC-GACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
17210676 GTCCCCCTCTGCATGCTGTCGATCCTACTA
130 GTCCCCCTCTGCATGCTGTCGATCCTACTA
* * * *
17210706 CCGCAACCCTCGGTCTGGTCCAATCTTAGACTT-GGAATGAACTTCGTATGCCTAAGCCAACCGA
1 CCGCAACCCTCGGTCCGGTCCGATCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
17210770 TGAAACGAGC
65 TGAAACGAGC
17210780 GGGCGGGTTG
Statistics
Matches: 200, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
159 196 0.98
160 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
GAAACGAGCATACGGGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
TCCCCCTCTGCATGCTGTCGATCCTACTA
Found at i:17211490 original size:26 final size:26
Alignment explanation
Indices: 17211439--17211491 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17211429 CTGGTCCAAT
**
17211439 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
17211465 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
17211491 C
1 C
17211492 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:17212390 original size:26 final size:26
Alignment explanation
Indices: 17212342--17212392 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212332 CATCCAATCC
* **
17212342 TAGACTGGGAATGGACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17212368 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17212393 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17213286 original size:26 final size:26
Alignment explanation
Indices: 17213230--17213287 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
17213220 TCGGTGTGGT
*
17213230 CCTAT-CTTAGTCTAGGAATGAACTC
1 CCTATGCTTAGACTAGGAATGAACTC
**
17213255 TGTATGCTTAGACTAGGAATGAACTC
1 CCTATGCTTAGACTAGGAATGAACTC
17213281 CCTATGC
1 CCTATGC
17213288 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
CCTATGCTTAGACTAGGAATGAACTC
Found at i:17214163 original size:26 final size:26
Alignment explanation
Indices: 17214127--17214177 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17214117 CATCCGATCC
* *
17214127 TAGACTGGGAATGGACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17214153 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17214178 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17215059 original size:26 final size:26
Alignment explanation
Indices: 17215030--17215082 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17215020 CTGGTCCGAT
*
17215030 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17215056 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17215082 C
1 C
17215083 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17215978 original size:26 final size:25
Alignment explanation
Indices: 17215934--17216012 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
17215924 CTGGTTCGAT
*
17215934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCTGTATG
*
17215960 CTTAGACTGGTAATAAACTCTGTATG
1 CTTAGACTGG-AATGAACTCTGTATG
*
17215986 GTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACT-GGAATGAACTCTGTATG
17216012 C
1 C
17216013 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.04
26 42 0.91
27 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:17217771 original size:26 final size:26
Alignment explanation
Indices: 17217735--17217787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217725 ATCCAATCTG
17217735 AGACTGCGAATGAACTCCGTATGCTT
1 AGACTGCGAATGAACTCCGTATGCTT
*
17217761 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGCGAATGAACTCCGTATGCTT
17217787 A
1 A
17217788 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
AGACTGCGAATGAACTCCGTATGCTT
Found at i:17219498 original size:26 final size:26
Alignment explanation
Indices: 17219469--17219529 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
17219459 TAACCCTCGG
17219469 TCCGTATGCTTAGACTGGGAAAGAAC
1 TCCGTATGCTTAGACTGGGAAAGAAC
*
17219495 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAAAGAAC
17219521 TCCGTATGC
1 TCCGTATGC
17219530 CTAAGCCAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAAAGAAC
Found at i:17220251 original size:26 final size:26
Alignment explanation
Indices: 17220222--17220274 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17220212 CTAGTCCGAT
17220222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17220248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17220274 C
1 C
17220275 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17221182 original size:4 final size:4
Alignment explanation
Indices: 17221129--17221291 Score: 62
Period size: 4 Copynumber: 41.8 Consensus size: 4
17221119 TCTTTTGTGT
* * *
17221129 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
* * *
17221176 TTTA TTTA TTTA TTTA TTTA TTT- TTCTA TTAA TGTT- TATA TGTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA -TTTA
* * * * *
17221225 TTTA TATA GTTC TGTA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA
*
17221272 -TTA -TTA TTTT TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTT
17221292 TTCTTGTAAT
Statistics
Matches: 120, Mismatches: 23, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
3 29 0.24
4 74 0.62
5 16 0.13
6 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:17221260 original size:17 final size:17
Alignment explanation
Indices: 17221240--17221272 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
17221230 ATAGTTCTGT
17221240 ATTTA-TTATATATTATA
1 ATTTATTTAT-TATTATA
17221257 ATTTATTTATTATTAT
1 ATTTATTTATTATTAT
17221273 TATTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATTTATTATTATA
Found at i:17222349 original size:17 final size:16
Alignment explanation
Indices: 17222315--17222354 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17222305 TTAGATTAGG
*
17222315 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
17222331 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
17222348 TTTATTT
1 TTTATTT
17222355 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:17222361 original size:17 final size:17
Alignment explanation
Indices: 17222341--17222388 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
17222331 TTTATCTTAA
17222341 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
17222357 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
17222375 TTTCTATTTTTATT
1 TTT-TATTTTTATT
17222389 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:17222388 original size:14 final size:14
Alignment explanation
Indices: 17222341--17222398 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
17222331 TTTATCTTAA
17222341 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
17222353 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
17222367 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
17222382 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
17222396 TTT
1 TTT
17222399 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:17222403 original size:17 final size:17
Alignment explanation
Indices: 17222364--17222403 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
17222354 TTTGTTTTAC
*
17222364 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
17222381 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
17222395 TTTTCTTTA
1 TTTTCTTTA
17222404 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:17222480 original size:59 final size:59
Alignment explanation
Indices: 17222406--17222638 Score: 373
Period size: 58 Copynumber: 3.9 Consensus size: 59
17222396 TTTCTTTAAA
*
17222406 TAAAAATCAAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
***
17222467 TAAAAATAAATTTTC--AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
17222525 TAAAAATAAA-TTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
17222583 TAAAAATAAATTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAATAAATTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTT
17222639 TCCGTACACA
Statistics
Matches: 160, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
57 15 0.09
58 74 0.46
59 64 0.40
61 7 0.04
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17226547 original size:21 final size:20
Alignment explanation
Indices: 17226514--17226556 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
17226504 ACAATGGATG
*
17226514 AAAAATGA-GAAAAGA-GAA
1 AAAAATGATGAAAAAAGGAA
17226532 AAAAATGATGAAAAAAGGAA
1 AAAAATGATGAAAAAAGGAA
17226552 AAAAA
1 AAAAA
17226557 AAGAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.36
19 6 0.27
20 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (20 bp):
AAAAATGATGAAAAAAGGAA
Found at i:17226556 original size:11 final size:10
Alignment explanation
Indices: 17226523--17226583 Score: 59
Period size: 11 Copynumber: 5.8 Consensus size: 10
17226513 GAAAAATGAG
17226523 AAAAGAGAAAA
1 AAAAGA-AAAA
* *
17226534 AAATGATGAAA
1 AAAAGA-AAAA
*
17226545 AAAGGAAAAA
1 AAAAGAAAAA
17226555 AAAAGAAAGAA
1 AAAAGAAA-AA
17226566 AAAAGAAAAA
1 AAAAGAAAAA
*
17226576 GAAAGAAA
1 AAAAGAAA
17226584 TGAGAAAATG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
10 19 0.45
11 23 0.55
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:17226557 original size:21 final size:19
Alignment explanation
Indices: 17226514--17226575 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 19
17226504 ACAATGGATG
*
17226514 AAAAATGAGAAAAGAG-AA
1 AAAAATGAGAAAAAAGAAA
17226532 AAAAATGATGAAAAAAGGAAA
1 AAAAATGA-GAAAAAA-GAAA
*
17226553 AAAAAAGAAAGAAAAAAGAAA
1 AAAAATG--AGAAAAAAGAAA
17226574 AA
1 AA
17226576 GAAAGAAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 8 0.22
19 6 0.16
20 1 0.03
21 14 0.38
22 7 0.19
23 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (19 bp):
AAAAATGAGAAAAAAGAAA
Done.