Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 89 of 117
Found at i:17226558 original size:22 final size:21
Alignment explanation
Indices: 17226523--17226600 Score: 77
Period size: 21 Copynumber: 3.6 Consensus size: 21
17226513 GAAAAATGAG
* *
17226523 AAAAGAGAAAAAAATG-ATGAA
1 AAAAGA-AAAAAAAAGAAAGAA
17226544 AAAAGGAAAAAAAAAGAAAGAA
1 AAAA-GAAAAAAAAAGAAAGAA
*
17226566 AAAAGAAAAAGAAAGAAATGAGA
1 AAAAGAAAAAAAAAGAAA-GA-A
*
17226589 AAATGAAAAAAA
1 AAAAGAAAAAAA
17226601 GGAGATTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
21 25 0.52
22 12 0.25
23 11 0.23
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (21 bp):
AAAAGAAAAAAAAAGAAAGAA
Found at i:17226589 original size:17 final size:17
Alignment explanation
Indices: 17226516--17226596 Score: 64
Period size: 17 Copynumber: 4.9 Consensus size: 17
17226506 AATGGATGAA
*
17226516 AAATGAGAAAAGAGAAAA
1 AAATGAGAAAA-AGAAAG
*
17226534 AAATGATG-AAAA-AAGG
1 AAATGA-GAAAAAGAAAG
17226550 AAA--A-AAAAAGAAAG
1 AAATGAGAAAAAGAAAG
**
17226564 AAAAAAGAAAAAGAAAG
1 AAATGAGAAAAAGAAAG
*
17226581 AAATGAGAAAATGAAA
1 AAATGAGAAAAAGAAA
17226597 AAAAGGAGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
13 4 0.08
14 7 0.14
16 6 0.12
17 24 0.47
18 9 0.18
19 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (17 bp):
AAATGAGAAAAAGAAAG
Found at i:17226605 original size:17 final size:17
Alignment explanation
Indices: 17226554--17226605 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
17226544 AAAAGGAAAA
*
17226554 AAAAAGAAAGAAAA-AAG
1 AAAAAGAAA-AAAAGGAG
* *
17226571 AAAAAGAAAGAAATGAG
1 AAAAAGAAAAAAAGGAG
*
17226588 AAAATGAAAAAAAGGAG
1 AAAAAGAAAAAAAGGAG
17226605 A
1 A
17226606 TTCAAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 3 0.10
17 26 0.90
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (17 bp):
AAAAAGAAAAAAAGGAG
Found at i:17227894 original size:42 final size:41
Alignment explanation
Indices: 17227847--17228103 Score: 388
Period size: 42 Copynumber: 6.1 Consensus size: 41
17227837 ATGATTGTAA
17227847 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
17227889 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
17227930 AGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
17227972 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* * *
17228014 AGGAGCAATTTATTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
17228055 AGGAGCAATTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
17228098 AGGAGC
1 AGGAGC
17228104 TTTGGTAAAA
Statistics
Matches: 201, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
41 74 0.37
42 99 0.49
43 28 0.14
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:17227989 original size:83 final size:83
Alignment explanation
Indices: 17227847--17228103 Score: 399
Period size: 83 Copynumber: 3.1 Consensus size: 83
17227837 ATGATTGTAA
*
17227847 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
17227912 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
17227930 AGGAGCAATTTACTTTCCAAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAG
17227995 TCGTGGTGCCTCTGTTTAG
65 TCGTGGTGCCTCTGTTTAG
* * * *
17228014 AGGAGCAATTTATTTTTC-AAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAA
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAA
* * *
17228078 GTCATTGAGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
17228098 AGGAGC
1 AGGAGC
17228104 TTTGGTAAAA
Statistics
Matches: 161, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
83 91 0.57
84 69 0.43
85 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:17228010 original size:125 final size:126
Alignment explanation
Indices: 17227847--17228103 Score: 437
Period size: 125 Copynumber: 2.0 Consensus size: 126
17227837 ATGATTGTAA
17227847 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
* * *
17227912 CGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAAGTCGTAGTGCCTCTGTTTAG
66 CATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTC-AAAGTCATAGAGCCTCTGTTTAG
*
17227972 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
* *
17228037 CATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCATTGAGCCTCTGTTTAG
66 CATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCATAGAGCCTCTGTTTAG
17228098 AGGAGC
1 AGGAGC
17228104 TTTGGTAAAA
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
125 93 0.75
126 30 0.24
127 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (126 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
CATGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCTCAAAGTCATAGAGCCTCTGTTTAG
Found at i:17228116 original size:1 final size:1
Alignment explanation
Indices: 17228110--17228173 Score: 56
Period size: 1 Copynumber: 64.0 Consensus size: 1
17228100 GAGCTTTGGT
* * * * * * * *
17228110 AAAAAAAATAAAAAATAAAAAAATAAAAAACAAAAAACAAAAAAAACACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17228174 TGACAATGTT
Statistics
Matches: 47, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.05
Consensus pattern (1 bp):
A
Found at i:17228166 original size:15 final size:15
Alignment explanation
Indices: 17228111--17228164 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
17228101 AGCTTTGGTA
*
17228111 AAAAAAATAAAAAAT
1 AAAAAAATAAAAAAC
17228126 AAAAAAATAAAAAAC
1 AAAAAAATAAAAAAC
*
17228141 AAAAAACAAAAAAAAC
1 AAAAAA-ATAAAAAAC
17228157 ACAAAAAA
1 A-AAAAAA
17228165 AACAAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
15 20 0.57
16 10 0.29
17 5 0.14
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAAAATAAAAAAC
Found at i:17228411 original size:21 final size:20
Alignment explanation
Indices: 17228382--17228524 Score: 75
Period size: 21 Copynumber: 6.7 Consensus size: 20
17228372 TTTTATGATT
17228382 TTATGATTTATTATTATTATA
1 TTAT-ATTTATTATTATTATA
17228403 TGTATATTT-TTACTTATT-TA
1 T-TATATTTATTA-TTATTATA
*
17228423 TT-TATTTATTTTTCTATTAATA
1 TTATATTTA-TTAT-TATT-ATA
*
17228445 TTTATATGTATT-TTATTTATATAA
1 -TTATATTTATTATTA--T-TAT-A
17228469 TTCTATATTTATTATATATTATAA
1 -T-TATATTTATTAT-TATTAT-A
17228493 TTA-ATTTATTATTATTATTA
1 TTATATTTATTATTATTA-TA
17228513 TT-T-TTTATTATT
1 TTATATTTATTATT
17228525 TTTCTTGTAA
Statistics
Matches: 101, Mismatches: 3, Indels: 38
0.71 0.02 0.27
Matches are distributed among these distances:
18 5 0.05
19 11 0.11
20 20 0.20
21 22 0.22
22 8 0.08
23 8 0.08
24 14 0.14
25 10 0.10
26 1 0.01
27 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TTATATTTATTATTATTATA
Found at i:17228507 original size:17 final size:16
Alignment explanation
Indices: 17228480--17228523 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
17228470 TCTATATTTA
17228480 TTATATATTATAATTAAT
1 TTAT-TATTATAATT-AT
*
17228498 TTATTATTATTATTAT
1 TTATTATTATAATTAT
*
17228514 TTTTTATTAT
1 TTATTATTAT
17228524 TTTTCTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.46
17 9 0.38
18 4 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATTATTATAATTAT
Found at i:17229596 original size:17 final size:16
Alignment explanation
Indices: 17229562--17229601 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17229552 TTAGATTAGG
*
17229562 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
17229578 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
17229595 TTTATTT
1 TTTATTT
17229602 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:17229633 original size:14 final size:14
Alignment explanation
Indices: 17229588--17229645 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
17229578 TTTATCTTAA
17229588 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* *
17229600 TTTTGTTTTACTAT
1 TTTTATTTTTCTAT
17229614 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
17229629 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
17229643 TTT
1 TTT
17229646 CTTTAAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 19 0.50
15 12 0.32
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:17229642 original size:29 final size:27
Alignment explanation
Indices: 17229589--17229643 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
17229579 TTATCTTAAT
*
17229589 TTTATTTTTATTTTTGTTTTACTATTC
1 TTTATTTTTATTTTTATTTTACTATTC
17229616 TTTATTTTTCTATTTTTATTATT-CTATT
1 TTTA-TTTT-TATTTTTATT-TTACTATT
17229644 TTCTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 4 0.17
29 14 0.58
30 2 0.08
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTATTTTTATTTTTATTTTACTATTC
Found at i:17231210 original size:26 final size:26
Alignment explanation
Indices: 17231159--17231211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17231149 GTTGACTTAG
*
17231159 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
17231185 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
17231211 G
1 G
17231212 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:17231997 original size:26 final size:26
Alignment explanation
Indices: 17231960--17232012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17231950 GTTGACTTAG
* *
17231960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17231986 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17232012 G
1 G
17232013 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17233327 original size:26 final size:25
Alignment explanation
Indices: 17233290--17233341 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17233280 GTTGACTTAG
*
17233290 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCC-AGTCTAA
17233316 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
17233341 G
1 G
17233342 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:17234273 original size:161 final size:159
Alignment explanation
Indices: 17234007--17234376 Score: 465
Period size: 161 Copynumber: 2.3 Consensus size: 159
17233997 CCGCCCGTCC
* * * *
17234007 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCCGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGACCCAGACCGA
* * * * *
17234072 GGGTTGTGGTAGCAGGATCGACAGCACATAGAAGGGGACCCGACCAATCCCCGGCTTGCGCATCC
66 GGGTTGCGATAGCAGGATCGACAGCACACAGAAGGGGACCCGACCAATCCCCGACTTACGCATCC
*
17234137 CGCCCCTCTGGCCGGCTGAGCGCCCGCAA
131 CGCCCATCTGGCCGGCTGAGCGCCCGCAA
*
17234166 GCTCGTTTCGTGGGTTGACTTAGGGCATACGAAGTTTCATTCCCAATCTAAGATCAGA-CCAGAC
1 GCTCGTTTCGTGGGTTGACTTA-GGCATACGAAG-TTCATTCCCAGTCTAAGATC-GACCCAGAC
* ** * ** * **
17234230 CGAGTGTTGCGATAGCAGGATCGGTAGCACGCAG-AGAGGGACCCGGTCGATCCTTGACTTACGC
63 CGAGGGTTGCGATAGCAGGATCGACAGCACACAGAAG-GGGACCCGACCAATCCCCGACTTACGC
* *
17234294 ATCTCGCCCATCTGGCCGGCTGAGCGCCCGCAC
127 ATCCCGCCCATCTGGCCGGCTGAGCGCCCGCAA
* **
17234327 GCTCTTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
17234377 CATACGGAGT
Statistics
Matches: 181, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
159 36 0.20
160 23 0.13
161 120 0.66
162 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGACCCAGACCGA
GGGTTGCGATAGCAGGATCGACAGCACACAGAAGGGGACCCGACCAATCCCCGACTTACGCATCC
CGCCCATCTGGCCGGCTGAGCGCCCGCAA
Found at i:17235659 original size:26 final size:26
Alignment explanation
Indices: 17235629--17235681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17235619 GTTGACTTAG
17235629 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
* *
17235655 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
17235681 G
1 G
17235682 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:17238368 original size:26 final size:26
Alignment explanation
Indices: 17238332--17238384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17238322 GTTGACTTAG
* *
17238332 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17238358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17238384 G
1 G
17238385 ATCGAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17238705 original size:902 final size:902
Alignment explanation
Indices: 17235397--17248231 Score: 15508
Period size: 904 Copynumber: 14.3 Consensus size: 902
17235387 GACGGCATTG
* * ** *
17235397 GGCTTGCGCATCCCGTCTTTCTGGCC-AGTGTAGTG---G-CCGCCCGCCCGTTCGCGCGTTTCG
1 GGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
** * * * *
17235457 TC-AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-TCGAAGCTTACG
65 TCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCG
* * * * * * * *
17235520 GCAGGAGGATTGGCAGCACGTAGAGGGGGACCCGATCGTTCCCCAGCTTGCGCATCCCACCCCTA
128 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** * **
17235585 TGGTCGGTTGAGCGCCCGCATTCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAG
193 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * ** * * * *
17235650 TCTAAGCATATGGATTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTGGCAGCAGCATATG
258 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * * * * * *
17235715 CTAGGCTTGAGCATGTGTTGGTGCCGCATTTTTCTTTG-CTGGGACATCATCGCCAGAGCGTCGT
323 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGC
* **
17235779 CGGAGAACCTGACCGATGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGATGGGTATGCGC
387 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGG-T--G--TGCGC
17235844 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
446 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * *
17235909 GAGAACTCGCACCCCCTTAAAAAGCATTTGGGATTTTACAGGTTTACTGCCAGTAGCAATTAAAG
511 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
17235974 TGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTG
576 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
17236039 AATTTTTTTTTGCATGCCAAAAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
641 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** * * *
17236104 TTCTGAAAAAATTTTAAAAAATCTCA-AACCGCAAAAAGTTTCGAAAATCCTGAAAAATAAAAAA
706 TTCCAAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
17236168 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCA
770 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
17236233 TAAAAATGCCATTGGCATGCAGAAATATAAACATCTGCCTAAGCCCACCTACCACCCTATCGATC
835 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
17236298 CAC
900 CAC
* * * *
17236301 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGACCGCCCGCCCGCTCGCTCGTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * ** * *
17236366 C-AGTTGGCTTAGGCATACGGAGTTCATTCCCTGTTTAAGATCAGACTGGACTAAGGGTTGCAGC
66 CGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * ** * *
17236430 AGCAGGATCGGTAGCACACAGAGGGGGACCCGACAAATCCTCGGCTTGCGCATCCCGCCCTTCTG
130 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * ** *
17236495 GCTGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATTCCTAGTC
195 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
17236560 TAAGCATAAGGAGTTCATTCCTAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAACACATGCT
260 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* *** * * * *
17236625 AGGCTCGGGCATGTGCTGGTGCCATTTTTTTCTTCG-CATGGGCACCATCACCGGAGTATCGTCG
325 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCG
* * * *
17236689 GAGAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGTGCACATGA
389 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGA
* * *
17236754 TGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAAC
452 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
17236819 CCACACCCCCTTAAAGATCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCACTAAAGTGTCTA
517 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
17236884 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
582 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
17236949 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCTTTCTC-
647 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CA
* * * **
17237013 AAAAAATTTTAAAAACTCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
711 AAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
17237078 ATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
776 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
17237143 TGGCATTGGCACGTAGAATTATGAAGATGTGCATAAACCCACCTGCCACCCTATCGACCCAC
841 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
17237205 GGCTTGCGCATCCGGTCTCTCTGGACGACGTAGT----GCCCACCTGTCCGCCCGCTCATTTCAT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * *
17237266 CGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTA
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * * *
17237331 GCAGGATCAGTAGCACGCAAAGGGGGACCC-ACCCGATCCCCAGCTTGCGTATCCCGCCCCTTTG
131 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** *
17237395 GCCGGCTGAGCGCCCGCGCGCTCGTTCCAAGGGTTGACTTAGGCATATGGAGTTCATTCCCTAGT
195 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGT
* **
17237460 CCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTTGGCAGCACATGC
259 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
17237525 TAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGTACCAT---C---G--T---CG
324 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * *
17237579 GAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGCGGGCCGGGGGGTGGGTGTATGGACA
389 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGT--GTG--CGCACA
* ** *
17237644 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTTGAG
449 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
17237709 AACTCA-AGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
514 AACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
17237773 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAG-CTTTAGCTGAA
578 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
17237837 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGACCAAAACTCCTT
643 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
17237902 CCAAAAAAATGTTAAAAAATCCAGAACCGTAAAATGTTTC-AAAATCGTGAAAAATAGAAAACGA
708 CCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* **
17237966 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAA
773 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
17238031 AAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
838 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * *
17238096 TGCTTGCGCATCTCGTCTCTTTGGCCGACGTTGTGCCCGCCTGCCCGCCCACCCACTCGTTTCAT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
17238161 CGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGGTCAGACCAGACTGACGATTGCAGCA
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * ** **
17238226 GTAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATACTTGGCTTGCGCATCGTGCCCCTCTGG
131 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
17238291 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCT
196 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * *
17238356 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACTGAGGGTTACGGCAGCACAGGATG
261 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
** * ** ** * *
17238421 GGCTCAAGCATGTGCTGGCGCCATATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCGGA
326 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * *
17238486 GAACCTGACCGACGACATTGGGGTTCTGATGATCGGGGGGTCCGAAGGGATGTGCGCACATGATG
391 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATG
* * * *
17238551 TGCAATTGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
454 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
17238616 GCACCCCCTTAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAA
519 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17238681 ATGGGGACACTTTTTTCGAATGGTCAAAAAATCTTGTAAACTTCGATTTTTTAGCTGAATTTTTT
584 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * * * *
17238746 TTTCCGTATCGACAAAAATAGAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAA
649 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
17238811 AAATTTTAAAAAATCCCGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTC
714 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
17238876 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
779 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
17238941 CAATGGCATGCAGAAATATGAAGATGTGCCTCAACCAACCTACCACCCTATCGATCCAT
844 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
17239000 GGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCACCCGCCCGCCTGCT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG----CCCG--C-CC-GCT
* * * * *
17239065 CATTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
58 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * *
17239130 TTGCAGTAGCAGGATCAGCAGCACGTAGAGGGGGAACCCGACCCGATTCCCCGACTTGCGCATCC
123 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGA-CCGA-TCCCCGGCTTGCGCATCC
* *
17239195 CGGCCCCTCTGGCCGGCTGAGCACCCCGCAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG
185 C-GCCCCTCTGGCCGGCTGAGC-GCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *** * *
17239260 -TCATTCCTAGTCTAAGCATACAGAGTTCATTCCTAAGTCTAAGATTAATATCAGACCG-GGGTT
247 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-CAGTCTAAGA-TCGGACCGGACCGAGGGTT
* * * ** *
17239323 GCTGGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGCACCATC
310 GC--GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG--GCA-C
* * *
17239388 GTTGGAGCATCGCCGGAGCATCGTCGGAGAACCTGACCGGA-GGCATTGAGGGTTTCGATGATCG
370 -------CATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTG-GGGTTCCGACGATCG
*
17239452 GGGGGCTGGGGGGTGTGCG-ACATCGATGTGCGATGGGTGCTGGTACTTGG---------T---C
426 GGGGGCCGGGGGGTGTGCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
17239504 CCCTATCCGTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT
490 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
17239568 TGCTGCGAGTAGCCATTAAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTT
555 TGCTGCCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
17239632 GTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA-AAAATATACAAGGATCACGTCT
619 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCT
* * *
17239696 ACCAAGTTT-GGGCCAAAACGCCTTCCAAAAAAATTGT-AAAAATCCCA-AACTGCAAAAAGTTT
683 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTT
**
17239758 CAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
747 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
17239823 CTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
812 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
17239888 ACCCACCTACCACCCTATCGATCCAC
877 ACCCACCTACCACCCTATCGATCCAC
* * * * * * *
17239914 GTCTTGCGCATCCTGTCTCTCTGGCTGACGTAGT----GCTCACCCGCCCGCCTGCTCGTTTTGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * *
17239975 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAATATTAGACCAGACCGAGGGTTCCAGTA
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * ** * *
17240040 GCAGGATCGACAGCATGCAGAGGGGGACTCGGTCGATCTCCGGCTTGCTCATCCCGCCCCTCTGG
131 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
17240105 TCGGCTGAGTGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
196 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * *
17240170 AAGCGTATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTG
261 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * * *
17240235 GGCTCAGGCATGTGCTGGTGCTGCGTTTTTCTTCGTCGGGTCACCATCACCGGTGCATCGTCGGA
326 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
17240300 GAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGT
391 GAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGT
** * *
17240365 TTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
455 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
17240430 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAA
520 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
17240494 TGGGGACGCTTTTTTCAAATGGTCCCAAAATCATGTACACTTTGAGTTTTTAGCTGAATTGTTTT
585 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
17240559 GTGCATGCCAACAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGGTGAAAACGCCTTCCGAAA
650 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
*
17240623 AAATTTTAAAAAATCCCA-AACCGTAAAAAGTTT-ATAAAATCGTGAAAAATAGAAAACGAGTCG
714 AAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCG
*
17240686 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAT
777 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17240751 GGCATTGGCATGC-GAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCCC
842 GGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * *
17240812 GGCTTGCGCATCCCATCTCTCT----GAC-TGGTG-TAG--TGCCCG---GCCCGCTCGTTTCAT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * *
17240866 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGA-TCGAGGGTTACAGC
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGC
** * * * * *
17240930 AGCAAAATCGGCAGCATGCAAAGGGGGACCCGGCCGATCCCCAGCTTGTGCATCCCGCCCCTCTG
130 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
17240995 GCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTC
195 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
17241060 TAAGCGTACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACT
260 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
17241125 GGGCTCAGGCATGTGCTGGTGCTGCGTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGG
325 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
*
17241190 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
390 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT
*
17241255 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACT
453 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
17241320 CAAACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
518 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
17241385 AATGGGGACACTTTCTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGTTGAATTTTT
583 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
17241450 TTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTTGGGCAAAAAATCCTTACAAA
648 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
17241515 AAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
713 AAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
17241579 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCAATAAAAAT
777 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17241644 GGCATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
842 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
17241705 GGCTTGTGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
17241770 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCTGACCGAGGGTTGTGGCA
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * ** *
17241835 GCTGGATCGGCAGCACGCAGAGGGGGACTCGGGCGATCCCCGGCTTGCGCATCCCGCCCCTTTGG
131 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
17241900 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCT
196 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** ** *
17241965 AAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAAACCGAGGGTTGCACCACCACATGCTG
261 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * * *
17242030 GGCTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCATCGTCGTCGAAGCATCGCTGGA
326 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
17242095 GAACCTAACCGGCGGCATTGGGGTTCCGACGATCGTGGGGGCTGGGGGGTGTGCGCACATGATGT
391 GAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
17242160 GCGATGGGTGCTGGTACTAGG-CCTTATATTGGCTCCCTACCCCTTATCAAACCTTGAGAACTCA
455 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17242224 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTTAAA
520 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17242289 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
585 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
17242354 GTGCATGCCAACAAAAATACAAGGATCAAGTTTGCCAAGTTTTGGGCCAAAATTACTTCCGAAAA
650 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
17242419 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
715 AATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17242484 TGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTCTGAATTTACAAGCCACAAAAATGGC
780 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17242548 ATTGTTACAT--AGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCGC
845 ATTG--GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
17242606 GGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAATGCCCGCCCGCCCGTCCGCCCGCTCCTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * ** * * *
17242670 CGGTTGGCTTAGGCATGCCTAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGTA
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * * ** * *
17242735 GTAGGATCGACAGCATGCAGAGGGGGGCCCAACCGATCATCGGCTTGTGTATCCCGCCCCTCTGG
131 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
17242800 CCGGCTAAGCGCCCGCACACTCGTTTCGTGGGTTAATTTAGGCATACGGAG-TCATTCCTAGTCT
196 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
17242864 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTA
261 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* ** * *
17242929 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGA
326 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
** * * *** * *
17242994 GAACCTGACCGGTGACATTGAGGTT-CGACGAT-AAAGGGCCGGGGGGTGTGCGTATATGATGTG
391 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17243057 CGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCTC
456 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17243122 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
521 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17243187 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
586 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * ** * *
17243251 TGCATGGGAACAAAAATACAAGGCATCACATCTAAAAATGTTTCGGGCGCTTAAAACTGCTTCCA
651 TGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAA-GTTT-GGG-GC-CAAAACTCCTTCCA
* * *
17243316 AAACAATTTTAAAAAATCCTGAACTC-CAAAAAGTTT-GAAAATCGTTGAAAAATAG-AAACGAA
711 AAAAAATTTTAAAAAATCCAGAAC-CGCAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACG-A
*
17243378 GTCGTTTCTTGCCATGAAA-TTCACGTCAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCAT
773 GTCG--TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * * * *
17243441 AAAAATGGTAGT-GCACGCAAAAATATAAAGAT-TGCCATAAAACACACCTACTACGCCTAT-GA
836 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC-T-AAACCCACCTACCAC-CCTATCGA
*
17243503 TCCTC
898 TCCAC
*
17243508 GGCTTGCGCATCCCGGTC-CT-TGGCCGACGTAGT--------GCCCG---GCCCGCTCGTTTTG
1 GGCTTGCGCATCCC-GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * ** * *
17243560 TCGGTT-GCTTAGGCATACGGAG-TCAATTCCTAGTCT-AGATCAGA-CAGACCAAGGTTTGCAG
65 TCGATTGGCTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGG
* ** **
17243621 CAGCCAGGATCGGCAGCACGCAGAGGTGGATGCGGTCGATCCCCGGCTTGCGCAT-CCGCCCCTC
129 CAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
17243685 TGAGTCTTGGTTGAAGAGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
193 TG-G-C-CGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
17243750 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTACGGTAGCA
254 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * **
17243815 CTTGCTGGGCTCAGGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCAT
319 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * ** * *
17243880 CGTCGGAGAACCTGACTGGCGATATTGGGGTTCCGACGATCAGGGGGCCCGGGGCGGGAGTGCGC
384 CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGG-GGGTGTGCGC
* ** * * *
17243945 ACTTGATGTATGATGGGTGCAGGTACTTGGCTCTTATATTGGCCCCCTGTCCCTCATCAAACCTC
446 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
17244010 GAGAACTCACACCCCCTTTCAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAA
511 GAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17244075 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCT
575 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * **
17244140 GAATTTTTTTATGCAAGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGGCCAAAA---
640 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
17244202 C-TCAAGAAAAAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAA
705 CTTCCA-AAAAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
17244265 AACGAGTCGCCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGC
768 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
17244330 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGA
833 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
17244395 TCCAC
898 TCCAC
* * * * * * * * * *
17244400 GGCTTGCGCATCCTGTCTGTCTGGAC-AGCATAATGCCCACCCGCCCACCCGCTCGCCCGTTTTG
1 GGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
** * ** * *
17244464 TC-AGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATC-GAATC-GACCAAGGGTTACA
65 TCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCG
* * * * * *
17244526 GTAGCAGGATCGGTAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTACGCATCCCACCCCTC
128 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
*
17244591 TGGCCGGCTGAGCGCCCGCATGCTCGTTTCGT-GG--G---T-----T---GAG----TT---AG
193 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * **
17244635 -----GCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGGCAGCACATG
258 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
17244695 CTGGGCTCGGGCATGTGTTGGTGCCGCCTTTTTCTTCGTAGGGGCACCATCGTCGGAGCATCGCC
323 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * *
17244760 AGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGTGGCCGTGGGAGTGTGCGCACATG
388 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGTGTGCGCACATG
* * * *
17244825 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTCGTCATCAAACCTCAAGAA
451 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
17244890 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTG-CATTAGCCATTAAAGTGTC
516 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTC
*
17244953 TGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
580 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
17245018 TTTTTATGCATGCTAACAAAAATAC-AGTGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTC
645 TTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
17245082 CAAAAAAATTTAAAAAAATCTCA-AACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGA
709 CAAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
17245146 GTCGTCTTGCCAT-AAA-TTCACGGGGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATA
773 GTCGTCTTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
17245209 AAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTAACGATCCA
837 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
17245274 T
902 C
* * * *
17245275 GGCTTGCGCATCCCATCTGTCTGGCCGGCGTAATGCCAACCCGCCCACACGCCCGCCCGCCCGCC
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G------TG--C-C-CGCCCGCCCGCCCGCC
* * * * * * *
17245340 CGCTCGTTTTGTC-AGTTGGCTTAGGCATATGGAGTTTAATCCCAGTCTAAGATCGGATCAAACT
54 CGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
** * * * * * * *
17245404 GAGGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGGGACTCGACCGATGCCCGACTTGTGCAT
118 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * *
17245469 CCCGCCCCTCTAGCCGGCTGAGAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
183 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * *
17245534 TCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACG
248 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * * * *
17245599 ACAACACATGCTAGGCTCGGGCATCTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCG
313 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * *
17245664 GAGCATCGCCAGAGAACCTGACCGACGGTATTGGGGTTCTGACAATCGGGGTGGCCGCGGGGGTG
378 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGTG
* *
17245729 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATTCCTCATCAA
441 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
17245794 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTG-CATTAGCCA
506 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCA
* **
17245857 TTAAAGTGTCTGAAATGAGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
570 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
17245922 TAGCTGAATTTTTTT-TGCATGCCAACAAAAATA-TAGTGATCACGTTTACCAAGTTTGGGGCCA
635 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCA
**
17245985 AAACTCCTTCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATTATGAAAAAT
699 AAACTCCTTCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
17246050 AGAAAACGAGTCGTCTTGGCATAAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTAC
764 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
17246115 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
829 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
17246180 TCGATCCAC
894 TCGATCCAC
* * * * * * * * *
17246189 GACTTGTGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCGCACCCGTCCGCCCGCTCGTTTTGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * *
17246254 -TAGTTGGCTTACGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGT
66 CGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* ** * * * *
17246318 AGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCGGGCTTGTGCATCCCACGCCTCTG
130 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
17246383 GCCGGCTGTGCGCCCGCACGCTCATTTCAT-GG--G---T-----T---GA---C-TT---AG--
195 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
17246425 ---GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTG-GAGTAGAACATGC
260 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-GCAGCACATGC
* * * * ** * *
17246486 TGGGCTCGGGCATGTGCTGGTGTCACAATTCTCTTCGTCACGGCACCATCGCCGAAGCATCGCCT
324 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* ** * * *
17246551 AAGAACCTGACCGACGGCATTGGGGTTTTGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATT
389 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
17246616 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTTGATAACTC
454 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * **
17246681 ACACCGCCTTAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCTGTTAAAGTGTCTGAA
519 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17246746 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGTTTTTAGTTGAATTTTTT
584 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
17246811 TATGCATACCAACCAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
649 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
17246876 AAATTTTCAAAAATCCCGAACCGCAAAAAGTGTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
714 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
17246941 TTGCCATGAAACTTAACGTGAAGGCTTAAGGGGCCATTCTATGAGTTTACAAGCCATAAAAATGG
779 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17247006 CATTGGCATGCAGAAATATGAAGATATGCCTAAACACACCTACCACCCTATCGATCCAC
844 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
17247065 GGCTTGCGCATCCTGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * *
17247130 -TAGTTGGCTTAGGCATAAGGAGTTGATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
66 CGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * * * * * * * *
17247194 AGTAGGATCAGCAACATGCAGAGGGGGACTCGATCGATCCTCAGCTTGCGCATGCCGCCCCTCTG
130 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
17247259 GCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
195 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
17247324 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAGCACATGCT
260 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** * * *
17247389 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCAGAGCATCACCGG
325 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
17247454 AGAACCTGACCGGCGGCATTGGGGTTCGGACGATC-----G--GGGGGGTGTACGCACATGATGT
390 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * * * *
17247512 GCGATGGGTGTTGGTACTCGGCCCTTATACTGGTCTCCTATCCCTCATCAAACCTAGAGAACCCT
455 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17247577 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
520 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17247642 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAATTTTTTT
585 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
17247706 GTGCATGCCAACAAATCTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
650 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
17247771 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCGTCT
715 AATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
17247835 TGCCATTAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
780 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17247900 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCAGCTACCACCCTATCAATCCAC
845 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * *
17247958 GGCTTGCGCATCCCGTCTCTCTGG-C--C--A----------GCCCGCCTACCCGTTTGTTTCGT
1 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* ** * * *
17248008 CGGTTGGCTTAGTTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CATGGGTTGTGGC
66 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCGGC
* ** * * * * * * *
17248072 AGCAAGATTAGCAACACGCAGAGAGGGACCCGATCGATCCTCGACTTGCACATCTCGCCCCTCTG
130 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
17248137 GCCGACTAATG-ACCCGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
195 GCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
17248201 CTAAGCATACGGAGTTCATTCCCAGCCTAAG
259 CTAAGCATACGGAGTTCATTCCCAGTCTAAG
17248232 CATACGGAGT
Statistics
Matches: 10391, Mismatches: 1256, Indels: 594
0.85 0.10 0.05
Matches are distributed among these distances:
872 2 0.00
873 157 0.02
874 94 0.01
875 326 0.03
876 769 0.07
877 8 0.00
878 210 0.02
879 2 0.00
881 4 0.00
882 1 0.00
883 15 0.00
884 79 0.01
885 6 0.00
886 1 0.00
887 65 0.01
888 126 0.01
889 59 0.01
890 77 0.01
891 574 0.06
892 398 0.04
893 817 0.08
894 332 0.03
895 368 0.04
896 241 0.02
897 287 0.03
898 307 0.03
899 291 0.03
900 415 0.04
901 291 0.03
902 979 0.09
903 175 0.02
904 1020 0.10
905 113 0.01
906 45 0.00
907 2 0.00
908 324 0.03
909 10 0.00
910 8 0.00
911 2 0.00
912 91 0.01
913 128 0.01
914 696 0.07
915 49 0.00
916 133 0.01
917 97 0.01
918 48 0.00
919 6 0.00
920 47 0.00
922 2 0.00
923 1 0.00
928 4 0.00
929 33 0.00
930 36 0.00
931 20 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
Found at i:17241977 original size:26 final size:26
Alignment explanation
Indices: 17241941--17241993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17241931 GTTAACTTAG
*
17241941 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17241967 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17241993 G
1 G
17241994 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17242876 original size:25 final size:26
Alignment explanation
Indices: 17242841--17242892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17242831 GTTAATTTAG
* *
17242841 GCATACGGAG-TCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17242866 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17242892 G
1 G
17242893 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17243762 original size:26 final size:26
Alignment explanation
Indices: 17243733--17243785 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17243723 GTTGACTTAG
17243733 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17243759 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17243785 G
1 G
17243786 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17245553 original size:26 final size:26
Alignment explanation
Indices: 17245523--17245575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17245513 GTTGACTTAG
* *
17245523 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17245549 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17245575 G
1 G
17245576 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17247337 original size:26 final size:26
Alignment explanation
Indices: 17247301--17247353 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17247291 GTTGACTTAG
17247301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17247327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17247353 G
1 G
17247354 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17248215 original size:26 final size:26
Alignment explanation
Indices: 17248179--17248255 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
17248169 GTTGACTTAG
*
17248179 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17248205 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17248231 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17248256 TGATTGGACC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17249033 original size:26 final size:26
Alignment explanation
Indices: 17248998--17249050 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17248988 GTTGACTTAG
17248998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17249024 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17249050 G
1 G
17249051 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17250135 original size:642 final size:643
Alignment explanation
Indices: 17248878--17250161 Score: 1858
Period size: 643 Copynumber: 2.0 Consensus size: 643
17248868 CAGACCGGAC
* * * ** * *
17248878 CGAGGGTTATGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTTGGCCGATCCCCGACTTACGCA
1 CGAGGGTTACGGCAGCAGGATCAGTAGCACGCAGAAGGGGACCCGACCGATCCACGACTTACGCA
* * * * * *
17248943 TCCTGCCCCTCTGGCCGGCTGAGCGCCCATACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAG
66 TCCCGCCCCTCTGGCCGGCTGAGCGACCATACGCTAGTTGCATGGGTTAACTTAGGCATAAGGAG
* * * *
17249008 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGC
131 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATAGGACCGAACTGAGGGTTGC
** *
17249073 GGTGGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCCCT
196 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCATATTTTTCTTCGTCGGGGCACCATCCCT
* * * *
17249138 GTAGAACCTGATCGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGCACACATGA
261 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGCACACATGA
* * * * *
17249203 TATGTGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCGTCATCAAACCTCGAGAAC
326 TATGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAAC
* * * *
17249268 TCACACCCCCTTAAAGAGCAATTCAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTG
391 TCACACCCCCTTAAAGAGCAATTCAGAGTTTACAGGTTTGCTACCAATAGCCATTAAAGTCTATA
* * *
17249333 AAATGGGGACATTTTTTTCAAATGGTAACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTC
456 AAATGGGGACAATTTCTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTC
* * *
17249398 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
521 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTAA
**
17249463 AAAAATTTAAAAAAATCCCAAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAT
586 AAAAATTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAT
* * * * * *
17249521 CGAGGGTTGCGGCAGCAGGATCAGTATCACGTAGAAGGGGACCCGATCGATCCACGGCTTGCGCA
1 CGAGGGTTACGGCAGCAGGATCAGTAGCACGCAGAAGGGGACCCGACCGATCCACGACTTACGCA
* * * * *
17249586 TCCCGCCCCTCTGGCTGGTTGAGCGACCGTACGGTCGTTGCATGGGTTAACTTAGGCATAAGGAG
66 TCCCGCCCCTCTGGCCGGCTGAGCGACCATACGCTAGTTGCATGGGTTAACTTAGGCATAAGGAG
* *
17249651 TTCATTGCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATAGGACCGGACTGAGGGTTGC
131 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATAGGACCGAACTGAGGGTTGC
* * *
17249716 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGTATTTTTCTTCGTTGGGGCACCATCGCT
196 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCATATTTTTCTTCGTCGGGGCACCATCCCT
*
17249781 GGAGAACCTGACCGGCGGCATTGGGGTT-CGGACGATCGGGGGGGCCG-GTGGGGTGTGCGCACA
261 GGAGAACCTGACCGGCGGCATTGGGGTTCCGG-CGATCGGGGGGGCCGAG-GGGG-GTGCACACA
* *
17249844 TGATGTGCGATGGGTGCCGGTACTT-GCCCTTATATTGG-CCTCTATCCCTCATCAAACCTCAAG
323 TGATATGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAG
* * * *
17249907 AACTCACGCCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTACCAGTAGCCATTAAAGTCT
388 AACTCACACCCCCTTAAAGAGCAATTCAGAGTTTACAGGTTTGCTACCAATAGCCATTAAAGTCT
* *
17249972 ATAAAATGGGGACAATTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
453 ATAAAATGGGGACAATTTCTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
17250037 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTC
518 TTCTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTC
* * **
17250102 TAAAAAAATTTTACAAAATCCTGAA-TCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
583 TAAAAAAATTTAAAAAAATCCCAAACT-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
17250162 AGGAGTCGTC
Statistics
Matches: 566, Mismatches: 71, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
641 1 0.00
642 257 0.45
643 280 0.49
644 28 0.05
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (643 bp):
CGAGGGTTACGGCAGCAGGATCAGTAGCACGCAGAAGGGGACCCGACCGATCCACGACTTACGCA
TCCCGCCCCTCTGGCCGGCTGAGCGACCATACGCTAGTTGCATGGGTTAACTTAGGCATAAGGAG
TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATAGGACCGAACTGAGGGTTGC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCATATTTTTCTTCGTCGGGGCACCATCCCT
GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGCACACATGA
TATGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCAATTCAGAGTTTACAGGTTTGCTACCAATAGCCATTAAAGTCTATA
AAATGGGGACAATTTCTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTC
TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTAA
AAAAATTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAT
Found at i:17251465 original size:26 final size:26
Alignment explanation
Indices: 17251428--17251480 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17251418 GTTGACTTAG
17251428 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17251454 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17251480 G
1 G
17251481 ATTTAATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17252358 original size:26 final size:26
Alignment explanation
Indices: 17252321--17252373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17252311 GTTGACTTAG
*
17252321 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
*
17252347 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
17252373 G
1 G
17252374 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAATCTAA
Found at i:17253078 original size:893 final size:900
Alignment explanation
Indices: 17249521--17254511 Score: 6655
Period size: 896 Copynumber: 5.6 Consensus size: 900
17249511 AAATAGAAAT
* * * * * * *
17249521 CGAGGGTTG-CGGCAGCAGGATCAGTATCACGTAGAAGGGGACCCGATCGATCCACGGCTTGCGC
1 CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * * * * * *
17249585 ATCCCGCCCCTCTGGCTGGTTGAGCGACCGTACGGTCGTTGCATGGGTTAACTTAGGCATAAGGA
66 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* * * * *
17249650 GTTCATTGCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGAT-AGGACCGGACTGAGGGTT
131 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTGGACCGAGGGTT
* * * ***
17249714 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGTATTTTTCTTCGTTGGGGCACCA---
195 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* *
17249776 TC---GC-T----GGAGAACCTGACCGGCGGCATTGGGGTTCGGACGATCGGGGGGGCCGGTGGG
260 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGTTTCTGACGATCGGGGGGGCCGG-GGG
* *
17249833 GTGTGCGCACATGATGTGCGATGGGTGCCGGTACTT-GCCCTTATATTGG-CCTCTATCCCTCAT
324 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
17249896 CAAACCTCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTACCAGTAGC
389 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * *
17249961 CATTAAAGTCTATAAAATGGGGACAATTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
454 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
17250026 TTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
519 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
* * * *
17250091 AAAACTCATTCTAAAAAAATTTTACAAAATC-CTGAATCGTAAAAAGTTTCAAAAATCATGAAAA
584 AAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * **
17250155 ATAGAAAAGGAGTCGTCTTGCCATGAGACTTCAGGTGAAGGCTTAAGGGATAATTGTATGAATTT
648 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17250220 ACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
713 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
17250285 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCC
778 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCC
* * *
17250350 GCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGAC
839 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * *
17250412 TGAGGGTTG-TGGCAACAGCATCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGT
1 CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * **
17250476 ATCCTGCCCCTCTGGTCGACTGAGCTCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATAAA
66 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* *
17250541 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTA-ACTGGACCGAGGATT
131 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTT
** * * **
17250605 ACGGTGGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
195 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* ** * * * *
17250670 CCGGAGCATCGTCGGAGAACCTGATCGACTGCATT-GGTGTTCTGACGATCGGAGGGGCCGGAGG
260 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGT-TTCTGACGATCGGGGGGGCCGG-GG
* * *
17250734 GGCTGTGCGTACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTC
323 GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
17250799 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
387 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
17250864 GCAATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATTTTGTACACTTCGAG
452 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
17250929 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTA-GG
517 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG
* * * * ** *
17250993 CCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAA
582 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
17251058 AATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATT
647 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
17251123 TACAAGGCATAAAAATTGCATTGGCATGCAGAAAGATAAAGATGTGCCTAAACCCACCTACCACC
712 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
17251188 CTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCAATGTAGT----GCCCGCCCGCCCGCT
777 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* * * * * *
17251249 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTTTAAGATCAGACCGGAT
842 TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
17251308 CGAGGGTTGCA--GCAGTAGGATCAACAGCACGCAAAGGGGGACCC-AACTGATCCCTGGCTTGC
1 CGAGGGTTG-ATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGC
* *
17251370 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGAGGGTTGACTTAGGCATACG
64 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
17251435 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTA-A-TGGGACTGATG
129 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACT-GGACCGAGG
* * * * * * *
17251498 GTTGCGGCAACACATACTGTGCTTGGGCATGTGCTGGTGCTGCTTTTTTCTTCACCGGGGCACCA
192 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA
* * * * * **
17251563 TCGTCGGAGCATCGCCGGAGAACCGGACCGGTGGCATTGGGGTTCCGACGATCGAAGGGGCCGGG
257 TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGTTTCTGACGATCGGGGGGGCC-GG
*
17251628 GGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCC
321 GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17251693 TCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
385 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
17251758 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
450 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
17251823 AGTTTTTAG-TAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAATTTTT
515 AGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTA
* * *
17251887 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATG
579 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
*
17251952 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
644 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17252017 ATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACC
709 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
17252082 ACCCTATCGATCCACGACTTGCGCA-CCTCGTCTCTCTGGCCGGCGCAGT--------GCCCGCC
774 ACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * *
17252138 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGAC
838 CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
17252201 CGAGGGTTGATGGCAGCAGGATTGGCAGCATGCAGAGGGGG-CTCGATCGATCCTCGGCTTGTGC
1 CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
17252265 ATCCCGCCCCTCTGGCCGGCTAAACGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGCA
66 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* *
17252330 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTG
131 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTA
* *
17252395 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTGTTCACCGGGGCACCATCGT
196 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
* * * *
17252460 TGGAGCATCACC-GAGAACTTGACTGACGGCATTGGGATTTC-GACGATCGGGGGGGCCGGGGGG
261 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG-TTTCTGACGATCGGGGGGGCCGGGGGG
* * *
17252523 TGTGCGCACAAGATGTGGGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * **
17252588 AAA-CTCGACAACTCACACCCCCTTGAAGAGCATTTGAGATGCTACAGGTTTGCTGCCAGTAGCC
390 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17252652 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTT
455 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
17252717 TTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATC-C-TCTACCAAGTTCAGGGCCA
520 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
* * *
17252780 AAACTCCTTCCGAAAAAATTTTAAGAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAAT
585 AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
17252844 AGAAAACGACTCGTCTAGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
650 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ***
17252909 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTGTGACCCTA
715 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
17252974 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCTCGCCCGCCCGCTTGT
780 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGT
* * *
17253039 TTCATCGGTTCGTTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGAC
845 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * *
17253094 CGAGGGTTG-TGGCAGTA-GATCGGCAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCAC
1 CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * ** * *
17253157 ATCTCGCCTCTCTGGCCGGCTGAAAGCTCGCACGCTCGTTTCGTGGGTTGACATAGGCATAC-AG
66 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-
* * *
17253221 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCGGA-TCGGACCGAAGGT
130 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGT
* * *
17253285 TACGACAGCACATGCTGGGCTCCGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATC
194 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
17253350 G-CTGGAGCATCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTTC-GACGATCG
259 GTC-GGAGCAT---C--A-C--CG---GAGAACCTGACCGGCGGCATT-GGGTTTCTGACGATCG
*
17253413 GGGGGGCCGAGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGA
311 GGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
***
17253478 ATGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
374 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
17253543 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCT
439 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
17253608 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAATGTACAAGGATGACGTC
504 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTC
* *
17253672 TACCAAGTTT-GGAACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
568 TACCAAGTTTAGG-GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
** *
17253736 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGG
632 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
17253801 ACCATTGTATGATTTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTA
697 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
17253866 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCC
762 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
17253931 GCCCGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
827 GCCCGCCCGCCCG--C-TT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17253996 GATTGCACCGGAT
888 GATCGGACCGGAC
* ** * * * * *
17254009 AGAGGGTT-ACAGTAGCAGGATCGGTAGCACGTAGAGGGGCACCCGATCGATCCCCGGCTTGTGC
1 CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
17254073 ATCCCGCCCCTCTGGCCAGCTGAGCGCCCGGACGGTCGTTTCGTGGGTTGACTTAGGCATATGGA
66 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* * * *
17254138 GTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-AGACCGGACCAAGGGTTA
131 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTA
* * *
17254202 CGGCAGCACTTGCTGGGCTTGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGT
196 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
* * * * *
17254267 CGAAGCATCACCGGAGAACTTGACCGGCGGCA-TGGGGTTCTGGCGATC-GGGGGGCTGGGGGGT
261 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGTTTCTGACGATCGGGGGGGCCGGGGGGT
**
17254330 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCA
326 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
17254395 AACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
391 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17254460 TTAAAGTG-CTAAAATGGGGACACTTTTTTGAAATGGTCACCAAATCTTGTAC
456 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
17254512 GCTTGTGCAT
Statistics
Matches: 3606, Mismatches: 413, Indels: 154
0.86 0.10 0.04
Matches are distributed among these distances:
886 181 0.05
887 51 0.01
888 1 0.00
889 157 0.04
890 67 0.02
891 234 0.06
892 242 0.07
893 302 0.08
894 68 0.02
895 4 0.00
896 565 0.16
897 227 0.06
898 2 0.00
899 40 0.01
900 137 0.04
901 5 0.00
902 57 0.02
903 39 0.01
904 284 0.08
905 193 0.05
906 67 0.02
907 155 0.04
908 3 0.00
909 49 0.01
910 198 0.05
912 2 0.00
913 2 0.00
914 32 0.01
915 107 0.03
916 135 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CGAGGGTTGATGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTA
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGTTTCTGACGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAA
AACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
Found at i:17253249 original size:26 final size:26
Alignment explanation
Indices: 17253213--17253263 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17253203 GTTGACATAG
17253213 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17253239 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
17253264 CGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17254770 original size:26 final size:26
Alignment explanation
Indices: 17254731--17254783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254721 GTTGACTTAG
*
17254731 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
17254757 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
17254783 G
1 G
17254784 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:17259644 original size:26 final size:26
Alignment explanation
Indices: 17259615--17259667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17259605 GTTGACTTAG
*
17259615 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
*
17259641 GCATACGGAGTTCATTCTAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
17259667 G
1 G
17259668 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:17260847 original size:894 final size:894
Alignment explanation
Indices: 17259104--17262980 Score: 5127
Period size: 894 Copynumber: 4.3 Consensus size: 894
17259094 GCATTTGAGA
* * * * * *
17259104 TTTTAGCTGAATTCTTTTCTGCTTGCCAACAAAAATACAAGGATCACATCTACAAAATTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
17259169 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
17259234 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
130 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * * *
17259299 ACAAGCCATAAAAAAGGCATTAGCACACAAAAATATGAAGATGTTCCCAAACCCACCTACCACCC
195 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
17259364 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCTGCCC
260 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC--CAC-CC-G-CC
* * * * * *
17259429 GCCCGCTCATTTCGTCGGCTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAA
316 G--TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * * * **
17259494 TCTAGGGTTG-TGACAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGCCAATCTTCGGCTTGCG
379 CCAAGGGTTGCAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCG
** * * * **
17259558 CATC-CTTTCCCTCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCTTCAGTTGACTTAGGCATACG
443 CATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
* * ** * *
17259622 GAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCTAAATCTAAGATCGGACTGGACCGAGGGT
507 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
17259687 TGTGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTCTGT-GTCGGGGCACCC
572 TGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCT-TCGTCGGGGCACCA
** * * * * * *
17259750 TCACCGGAGCATCGCCGGAGAACTTAACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGAG
635 TCGTCGGAGCATCGCC-GAGAACCTGACCCGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG
* * *
17259815 GGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTC
699 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
17259880 ATCAAACCTCGAGAACTCACTCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
764 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
17259945 GGCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
829 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
17260009 T
894 T
*
17260010 TTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
17260075 CAAAACTCCTTCCAAAAATATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAA
66 CAAAACTCCTTCCAAAAA-ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * *
17260140 ATAGAAAATGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATAT
130 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17260205 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
195 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
17260270 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCACCCG-CGTGCTCGTT
260 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCGTGCTCGTT
* * * * * *
17260334 TCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCAAGGGTTGT
325 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC
* * * * *
17260399 GGCAGCAGGATCGACAGCATGCAAAGGGGGACCCAACTGATCCCCGGCTTGCGCATCTCGCCCCT
390 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCTCGCCCCT
* * *
17260464 CTGGCCGGCTGAGCGCCCGCACATTCGTTTCATGGGTTGACTTAGGTATACGGTGTTTC-TTCCC
455 CTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAG-TTCATTCCC
* * * * *
17260528 AGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGATGGTTGCGGCAGCACA
519 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACA
* * * *
17260593 TGCTGGGCTCGAGTATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATCG
584 TGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* *
17260658 CCAGAGAACCTGACCCGCGGCATTGGAGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACAT
649 CC-GAGAACCTGACCCGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* * * *
17260723 GATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTTGAGA
713 GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
17260788 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTC
778 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** * * *
17260853 TGGTATGGGGACACCTTTTT-AAATTGTCACAAAATCTTGTACACTTTGAGT
843 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17260904 TTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCTAGTTTGGGCC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
17260968 CAAAACACCTTCCAAAAAAATTTGAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCTTGAAAA
66 CAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * *
17261033 ATAGAAAAAGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGTCCATTGTATGAATTT
130 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17261098 ACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
195 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * *
17261163 TATCGATCCATGGCTTGCGCATCTGGTCTCTCTGACCGGCGTAGTGCCCACCCGCCCGCCTGTCC
260 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCA----CCCGCC-GT--
* *
17261228 ACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGA
318 ----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * *
17261293 CTAAGGGCTGCAGTAGTAGGATCGACAGCACGTAGAGAGGGAACCAGCCGATCCCCGGCTTGCGC
379 CCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGC
* * * ** ** * *
17261358 ATCCCGCCCCTCTAGCCGGCTGAGTGCCCATACACTCGTTTTGTGGGTTGACTTAGGCATACAGT
444 ATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
17261423 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTA
509 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
17261488 CGACAGCACATGCTGGGCTCGCGCATTTGCCGGTGCCACATTTTTCTTCGTCGGGGTACCA---T
574 CGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT
* * * *
17261550 C---GC-T-G--GAGAACCTGACCAGCGGCATTGGGGTTTTGATGATCGGGGGGGTCGGGGGGAT
639 CGGAGCATCGCCGAGAACCTGACCCGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGG-T
* * *
17261608 GTGCGCTCATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCA
703 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
17261673 AACCTCGAGAACTCACACTCCCC-TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
768 AACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
17261737 ATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGT
832 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17261800 TTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCATGCCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
17261865 CAAAACTCCTTTCGAAAAAATTTTAAACAATCTCGAACCGGAAAAAGTTTCGAAGATCGTGAAAA
66 CAAAACTCC-TTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
17261930 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
130 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17261995 ACAAGCCATAAAAATGGCATTGGCACGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCC
195 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
17262060 TATCGATCCACGGCTTGAGTATCCCGTCTCTCTGGCC-AGGGTGGTG----CCCGCC-CGCTCGT
260 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGCCGTGCTCGT
* * * *
17262119 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT-AGGATCGGATCGAGGGTT
324 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCAAGGGTT
* * * * * * *
17262182 GCAGTAGCAGGATC-AGCAGCACACAGAGGGGGACTCGGTCGATCTCCGGCTTGTGCATCTCGCC
388 GCAGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCTCGCC
* * *
17262246 CCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
452 CCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
17262311 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCA
517 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA
* * * *
17262376 CATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATTGGGGCACCATCG-CTGGAGCA
582 CATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCA
* * **
17262440 TCGCCGAAGAACCTGA-CCGACGGAATTGGGGTTTCGATGATCGGGGGGGCTAGGGGGTGTGCGC
646 TCGCCG-AGAACCTGACCCG-CGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* * *
17262504 ACATGATGTATGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
709 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * *
17262569 GAGAACTCACGCCCCCTTAAAGAGCATCTAAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAG
774 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
17262634 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGT
839 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
17262689 TTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
17262754 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCC-TTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
17262819 ATAGAAAACGAGTCGTCTTACCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
130 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
17262884 ACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
195 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
17262949 TATCGATCCACGGCTTGCGCATCCCGTCTCTC
260 TATCGATCCACGGCTTGCGCATCCCGTCTCTC
17262981 CGGCTAAGCG
Statistics
Matches: 2628, Mismatches: 300, Indels: 103
0.87 0.10 0.03
Matches are distributed among these distances:
879 2 0.00
880 237 0.09
881 37 0.01
882 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 302 0.11
890 157 0.06
891 41 0.02
893 258 0.10
894 551 0.21
895 160 0.06
896 52 0.02
897 256 0.10
898 6 0.00
899 6 0.00
900 2 0.00
902 5 0.00
904 3 0.00
905 272 0.10
906 276 0.11
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (894 bp):
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCGTGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCA
GCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCTCGCCCCTC
TGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
GAGAACCTGACCCGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
Found at i:17261445 original size:26 final size:26
Alignment explanation
Indices: 17261414--17261466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17261404 GTTGACTTAG
*
17261414 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17261440 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17261466 G
1 G
17261467 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17262324 original size:26 final size:26
Alignment explanation
Indices: 17262294--17262346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17262284 GTTGACTTAG
*
17262294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17262320 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17262346 G
1 G
17262347 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17263059 original size:26 final size:26
Alignment explanation
Indices: 17263021--17263073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263011 GTTGACTTAG
* *
17263021 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17263047 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17263073 G
1 G
17263074 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17263642 original size:713 final size:714
Alignment explanation
Indices: 17262263--17263693 Score: 2237
Period size: 713 Copynumber: 2.0 Consensus size: 714
17262253 CCGACTGAGT
*
17262263 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
1 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
*
17262328 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
66 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGCGCA
* *
17262393 TGTGCTGGTGCCACATTTTTCTTCATTGGGGCACCATCGCTGGAGCATCGCCGAAGAACCTGACC
131 TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGC----GCA----CGAAGAACCTAACC
*
17262458 GACGGAATTGGGGTTTCGATGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTATGATGGGTG
188 GAC-GAATTGGGG--TC-A-GATCGGGGGGGCGAGGGGGTGTGCGCACATGATGTATGATGGGTG
* *
17262523 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTA
248 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
17262588 AAGAGCATCTAAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACT
313 AAGAGCATCTAAGATTTTACAAGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
17262653 TTTTTCAAATGGTCACAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAA
378 TTTTTCAAATGGTCACAAACCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAA
*
17262718 CAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
443 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * * *
17262783 ATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCGTGAAAC
508 ATATCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGACTTACCATGAAAC
*
17262848 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTA
573 TTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTA
17262913 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
638 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
17262978 CTCCGGCTAAGC
703 CTCCGGCTAAGC
* *
17262990 GCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACAG
1 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * * *
17263055 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGGGGCAGCACATGCTGGGCTCGCGCA
66 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGCGCA
* * *
17263120 TTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC-CA-G-AGAACCTAACCAGTA-GCA
131 TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCGCACGAAGAACCTAACC-G-ACGAA
* *
17263181 TTGGGG-C-GATCGGGGGGGTCGAGGGGGATGTGCGCTCATGATGTATGATGGGTGCTGGTACTT
194 TTGGGGTCAGATCGGGGGGG-CGAGGGGG-TGTGCGCACATGATGTATGATGGGTGCTGGCACTT
*
17263244 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATC
* *
17263309 TGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
322 TAAGATTTTACAAGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
17263374 TGGTCACAAAACCTTGTATACTTTGAGTTTTTAGCTGAAT-TGTTTTGTGCATGTCAACAAAAAT
387 TGGTCAC-AAACCTTGTACACTTCGAGTTTTTAGCTGAATGT-TTTTGTGCAAGCCAACAAAAAT
*
17263438 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAACAATATCGA
450 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATATCGA
* * * * *
17263503 ACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGAGTTGCCATGAAACTTCACGG
515 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGACTTACCATGAAACTTCACGG
* * *
17263568 GCATGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGCCATGTAGAAATAT
580 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATAT
17263633 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
645 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
17263694 TGGCCGGCGT
Statistics
Matches: 653, Mismatches: 45, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
710 11 0.02
711 7 0.01
712 164 0.25
713 290 0.44
716 18 0.03
717 2 0.00
718 1 0.00
722 2 0.00
727 158 0.24
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (714 bp):
GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGCGCA
TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCGCACGAAGAACCTAACCGACGAATT
GGGGTCAGATCGGGGGGGCGAGGGGGTGTGCGCACATGATGTATGATGGGTGCTGGCACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTAAG
ATTTTACAAGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAACCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGG
ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATATCGAACCGCA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGACTTACCATGAAACTTCACGGGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGGCTAAGC
Found at i:17263940 original size:26 final size:26
Alignment explanation
Indices: 17263904--17263956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263894 GTTGACTTAG
*
17263904 GCATAAGGAGTTGATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
17263930 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
17263956 G
1 G
17263957 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:17264844 original size:26 final size:26
Alignment explanation
Indices: 17264808--17264860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17264798 GTTGACTTAG
*
17264808 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17264834 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17264860 G
1 G
17264861 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17265078 original size:904 final size:903
Alignment explanation
Indices: 17262951--17279152 Score: 20649
Period size: 904 Copynumber: 18.2 Consensus size: 903
17262941 TACCACCCTA
* * * * **
17262951 TCGATCCACGGCTTGCGCATCCCG--TCTCT--CCGGCTAAGCGCCCGCACGCTCATTTTATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17263012 TTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
17263077 GGACTGGATCGAGGGTTGGGGCAGCACATGCTGGGCTCGCGCATTTGCTGGTGCCACATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
17263142 TCGTCGGGGCACCATCG-C----CA------GAGAACCTAACC-A-GTAGCATT-GGG----G-C
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG--GCATTGGGGTTCCGAC
* * * **
17263188 GATCGGGGGGGTCGAGGGGGATGTGCGCTCATGATGTATGATGGGTGCTGGTACTTGGCCCTTAT
259 GATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
17263253 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
323 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
17263318 ACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
388 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
17263383 AACCTTGTATACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGTCAACAAAAATACAAGGATCA
453 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
17263448 TGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAACAATATCGAACCGTAAAAA
518 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * ** * * *
17263513 GTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGAGTTGCCATGAAACTTCACGGGCATGCTTAA
583 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
17263578 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGC
648 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
*
17263643 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
713 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
17263708 CCCGCCCG-CC-CAC-CCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTGT
778 CCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
17263769 AAGATCGGACCAGACCGATGGTTGCGGCAGCAGGATCAGCAGCACACAGAGAGGGACCCGG
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * *
17263830 TCGATCCCCAGCTTGCGCATCCTGCCCCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17263895 TTGACTTAGGCATAAGGAGTTGATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17263960 AGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTGT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
17264025 TCGCCGGGGCATCATTGTTGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
17264090 TCGGGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCTACGGGTGCTGGTACTTGGCCCTTATAT
261 TCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
17264155 TGGCCCCCTATCCCTCATCAAACCAT-AAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTA
325 TGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
17264219 CAGGTTTCCTCCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
17264284 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCAC
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17264349 ATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAGTTTTAAAAAATCTCGAACCACAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
17264414 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
17264479 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
17264544 TGAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
17264609 ACGCCCGCCCGCCCGTTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTGT
779 CCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * *
17264673 AAGATTGGACCGGACTGAGGGTTGTGCCAGCAGGATCGGCAGCACACAGAGGGGAACCTGG
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * * *
17264734 TCGATCCCCAGCTTGTGCATCCCGCCCCTCCGGCTGGCTGAGTGCCTGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17264799 TTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * **
17264864 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
17264929 TCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
17264994 TCGGGGGGGCCGGCGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
261 TCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
17265059 TGGCCCCCTATCCCTCATCAAACCACAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
325 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
17265124 AGGTTTCCTTCCAGTTGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
390 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
17265189 TCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACG
455 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* ** * *
17265254 TCTACGAAGTTTGGGGCCAAAAAGCCTTCCGAAAAAATTTTAAAAACTC-CTGAACCGTAAAAAG
520 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
** * *
17265318 TTTTGAAGATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
17265383 GGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
17265448 TAAACCCACCTACCACCCTATCGATCCATGGCTTGAGCATCCCGTCTCTCT-GCCGGCGTAGT--
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* *
17265510 ------GCCCG--C-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATT-CCAGTCTA
779 CCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
17265565 AGAT-AGGATCAGATTGAGGGTTACGGTAGCAAGATCGGCAGCACACAGAGGGGGACTCGG
844 AGATCA-GACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * *
17265625 TCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCACGCTCGCTCGTTTCGTAGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
17265690 TTCACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * *
17265755 GGACCGGATTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATATGCTGGTGCCGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * ***
17265820 TCGTCGGGGCACCATCG-CTGGAGCATCGCCGAAGAACCTGATCGACGGAATTGGGGTTTCGGTA
196 TCGCCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
17265884 ATTGGGGGGGGCC-AGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
260 A-TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
17265948 TTGGCCCCCTATCCCTCATCAAACCACAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
324 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
17266013 CAGGTTTCCTTCCAGTTGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
17266078 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCAC
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17266143 ATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAGTTTTAAAAAATCTCGAACCACAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
17266208 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17266273 GGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGTTGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
17266338 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * ** *
17266403 CCGCCCGCCCACCCGCCCGCTCATTTCGTCATTTGGCTTAGGCATATGGAGTTCATTCCCAGTCT
779 CCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * ** * ** * * *
17266468 AAGATTGGATCAAACCGAGGGTTGCGGCAGCAGGATCAACAGTACGCAGAGGGGGACCCGA
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * *
17266529 TCGATCCCCGGCTGGCACATCCCACCCATCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17266594 TTGACTTAGGCATA-TGAGTTTA-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * * * *
17266657 AGACCGGATCGAGGGTTACACCAGCACTTGCTGGGCCCGGGGATGTGTTGGTGCCACATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * ** * * * *
17266722 TCATCGGGGCACCATCGCCGAAGCATTACTGGAGAACCTGACAGGCGCCATTGGGGTTCC-ACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
17266786 T---------CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGATGGTACTTGGCCCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17266842 GGCCCCCTATCCCTCATCAAA-CTGTGAGAACTCACA-CCCCTTAAAAGTGCATTTGAGATTTTA
326 GGCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTA
* * * * *
17266905 CAGGTTTGCTGCCAATAGCCATTGAAGTATCTGAAATGGGGACACGTTTTTCAAGTGGTCACAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
17266970 ATCTTGTACACTCCGAGTTTTTGGCTGAATTTGTTTT-TGCATGCCAAAAAAAATACAAGGATGA
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * *
17267034 TGTCTACCAAGTTTGGGGCTAAAACTCCATCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAA
518 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
** * * * *
17267099 GTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAAGTTCACGTGAAGGCTTAA
583 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
17267164 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
648 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
17267229 CTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGACGTAGT-
713 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* **
17267293 -------GCCCG--C-CCGCACGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATT-CCAGTCT
778 CCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * ***
17267347 AAGATC-GAACCAGATTGAGGGTTGTGGTAGCAGGATCGGTAGCATGTAGAGGGGGACCCGG
843 AAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * *
17267408 TCAATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGGGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
17267473 TTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCGGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17267538 GGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
17267603 TCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * * *
17267668 T-TGGGGGGCC-GGGGGGTGTGTGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATCTT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
** * * * * *
17267731 GGCATCCTATCCCTCACCAAACCTCGAGAACTCAAATCCCCTTAAAAAGCATTTGAGATTTTATA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * ** * *
17267796 GGTTTGCAGCCAGTAGACATTAAAGTGTCACAAATGGGGACACTTTCTTCAAATGATCACAAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
17267861 CTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAAATACAAGGATCATG
456 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACG
** * * * **
17267926 TCTAAAAAGTTTTGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATC-CTGAACCATAAAAAG
520 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
* * ** *
17267990 TTTCAAAAATCATGAAAAATAGAAAATGAGTTATCTTGCCATGAATCTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
17268055 GGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCATC-CAGAAATATGAAGATGTGC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGC
* * * *
17268119 CTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGATGCAGTG
713 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * *
17268184 CTCGCCCGCCCTCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
778 CCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** * * *
17268249 TAAGATCAGATCGAACTGAGGGTTACGACAGCAGGATCGATAACACTCAGAGGGGGACCCAG
842 TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * *
17268311 TCGATCACCGGCTTCCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCACACGCTCGTTTTGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
17268376 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
17268441 GGACCGGATCAAGGATTACGGCAGCACATGCTGGGCTTGGGCATGTGTTGCTGCTGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
17268506 TCGTCGGGTCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGA-G
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC-CGACG
*** * *
17268570 ATTAAGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
260 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
17268635 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTTAGATTTTAC
325 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
17268700 AAGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAA
390 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
17268765 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
455 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * ** * * * *
17268830 ATCTAACAAGTCTGGGGCCAAAACTCCTTCTAAAAAAATTTGAAAAAAACCCGAACCGCAAAGAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* * * * *
17268895 TTTTAAAAATTGTAAAAAATAGAAAATGGGTCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
17268959 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
17269024 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGACTCTTTGGCCGACGT-GT--
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
**
17269086 -----CGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTA
779 CCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * * *
17269143 AGATCAGACCGGACCAAGGGTTACGGCAGCAAGATCGACGGCACGCAGAGGGAGAGCCGG
844 AGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * *
17269203 -CTGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
1 TC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
17269267 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG-CTAGGAT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
17269331 CGGACCGGATCGAGGTTTACGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
130 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
*** * * * *
17269396 TTCGTTAGGGCACCATCGCCGGAGCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
195 TTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
17269461 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGAACTTGGCCCTTATAT
260 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
17269526 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCCCTTAAAGAGCATTTGAGATTTTA
325 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTA
*
17269591 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
17269656 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAGTACAAGGATCAT
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * * *
17269721 GTCTACCATGTTTGGGGCTAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCTAACCGCAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
** *
17269786 TTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
17269851 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
*
17269916 TAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* *
17269981 TCGCCCGTCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
779 CCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * ** * *
17270043 AGATCA-AACGAAACCGAGGTTTGTGGCTGCAGGATTGGCAGCATGCAGAGGGTGACCCGA
844 AGATCAGACCG-GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * * * *
17270103 CCAATCCCTGACTTGTGCATCCCGCCCCTCTGGCCGTCTGAGCGCCCGCACGCTCATTTCGT--G
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17270166 --GA--T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCTAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * *
17270207 GGACCGGACTAAGGGTTGCTGCGGCACATGCTGGGCTCGGCCATGTTCTGGTGCCGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
17270272 TC-CCTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGATGGCATTGGGGTTCCGACG
196 TCGCC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
17270336 ATCGGCGGGGCCGGGTGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
260 ATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
17270401 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
324 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
17270466 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17270531 ATCTTGTACACTTTGAGTTTTTAGCTGAA------T-T---T-----------T-CAA--AT---
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * * *
17270569 GTCTACGAAGTGTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
17270634 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
17270699 GGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAGGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
*
17270764 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
*
17270829 CCGCCCGCCCG--CG-C-C-C---TCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTA
779 CCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
17270886 AGATCAGACTGAACTGAGGGTT------GC-GG-T----AGCACAAAGAGGGGGATCCGA
844 AGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * *
17270934 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
17270999 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17271064 GGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
17271129 TCGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
17271194 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
17271258 GGCCCCCTATCCCTCCTCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17271323 GGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAAACTTTTTTCAAATGGTCACAAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * * *
17271388 CCTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGAACGCAAAAAAAAATGCAAGGATCACGT
456 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
17271453 CTACCAAGTTTGGGGCCAAAACTCGTTCCGAAATAATTTTAAAAAATCTCGAACCGCAAAAAGTT
521 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
*
17271518 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
586 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** * *
17271583 ACCATTGTTTAAATTTACAAGAGATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTA
651 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
*
17271648 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCC
716 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
*
17271713 GCCCGCCCG--CG-C-C-C---TCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAG
781 GCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
17271770 ATCAGACTGAACTGAGGGTT------GC-GG-T----AGCACAAAGAGGGGGATCCGA
846 ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * *
17271816 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
17271881 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17271946 AGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
17272011 TCGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
17272076 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
17272140 GGCCCCCTATCCCTCCTCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17272205 GGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAAACTTTTTTCAAATGGTCACAAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * ** * *
17272270 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAACGTAAAAAAAAATGCAAGGATCACGT
456 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
17272335 CTTCCAAGTTTGGGGCCAAAACTCGTTCCGAAATAATTTTAAAAAATCTCGAACCGCAAAAAGTT
521 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
*
17272400 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
586 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** * *
17272465 ACCATTGTTTAAATTTACAAGAGATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTA
651 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * **
17272530 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGTGTAGTGCCC
716 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * *
17272595 ACCCTCCCACCCGCTCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
781 GCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
17272660 GATC-GAACCAGATTGAGGGTTGCGGTAGCAGGATCGATAGTACACAGAGAGGGACCCGA
845 GATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * *** * **
17272719 CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGATTGGCTCAATGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17272784 TTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17272849 GGTCTGGACCGAGGGCTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * ** * * * *
17272914 TCGTCGGGGCACTATCACCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * **
17272979 T-TGGGGGGCCGGGGGGGTGTGCGCACAGGATGTATGATGGGTGCTGGTACTTGGCCCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
**
17273043 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17273108 GGTTTGCTGCCAGTAGCAATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
17273173 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGG---A--T
456 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * * *
17273233 CTACCAAGTTTGGGGCTAAAACTCCTT-CGAAAAAAATTAAAAAAAATCCCAAACCGTAAAAAGT
521 CTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* * * * *
17273297 TTCAAAAATCGTGAAAAATGGAAAACGAGGCGCCTTGCCATGTAACTTCACATGAAGGCTTAAGG
585 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
17273362 GACCATTGTATTAATTTACAAGCCATACAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
650 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * *
17273427 AAACCCACCTACCA-CCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTTCC
715 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * *
17273491 CGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGG-TTAGGCATACAGAGTTCATTGCTAGTCTA
780 CGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
17273555 AGATTAGATCGGACTGAAGGTTGCGGCAGCAGGATGGGCAGCATGA-AGAGGGGGACCCGG
844 AGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA-CACAGAGGGGGACCCGG
** ** * *
17273615 TCGAAACCCGGCTTGCGCATCCCGTTCTTCTGGCCGGCTGAGGGGCCCGCACGCTCGTTTCGTGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGG
* *
17273680 GTTGACGTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
17273745 TGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA--TTTC
130 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * ** *
17273808 -T-----------CTTCGTCGGAGCATCGTCGAAGAACCTGACCGGTGGCATTTGGGTTCC-AGC
195 TTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
* * *
17273860 GATC-GGGGGG-CTGGGGGGTGTGCGCACATGATGTGCAATTGGTGCTGGTACTTGGCCCTTATA
259 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
17273923 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTA
324 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * **
17273988 CAGTTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGGAAA
389 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
17274053 ATCTAGTGCACCTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
454 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17274118 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAATTTTAAAAAATCTCAAACTGTAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
17274182 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAGG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ** **
17274247 GGACCATTGTATGAATTTACAAGCCAAAAAAATATCATTGGCACATAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
17274312 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * * * *
17274377 CTGCCTGCCCACCCGCCCGCTCCTTTCGTCGATTAGCTTAGCCAT-CGGAGTTCATTCCCAGTCT
779 CCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * ** *
17274441 AAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAAGGGGACCCGGG
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC-GG
* * * * * * * * * *
17274503 T-GATCCCCGGCTTGCACATCCTGTCCCTCTAGCTGGTTGAGCGACTGCACGCTCGTTTCATGCG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17274567 TTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGCTCATTCCTAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
17274632 AGACCAGATCGAGGGTTGCGGCTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
17274697 TCGTCGGGGCACTATCGTCGGAGCATCACCGGAGAACCTGACCTG-CGGCATTGGGGTTCCGACA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACG
** *
17274761 ATCGGGGGGGCCGAAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
260 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* ** *
17274826 TGGCCCCCTATCCCCCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTAC
325 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * * *
17274891 AGGTTTGATGCCAGTAGCCATTAAAGCGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAGA
390 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
17274956 TCTTGTACACTT-GAAGTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGAATCAC
455 TCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17275020 GTCTACCAAGTTTGGGGTCAAAACTCCTACCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG
519 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* ** *
17275085 TTTCAGAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17275150 GGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
17275215 TAAGCCCACCTACCACACTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
17275280 CCGCCCGCCCG--C-CCGATCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
779 CCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
17275342 AGATTGGATCGGACCGAGGGTTGCTGCAGCATGATCGGCAGCACGCAGAGGGGGACCCAG
844 AGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * *
17275402 TCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAAGCTTGTTTC----G
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
17275463 TTG--TT-----T---GA---C-TT---AG-----GCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * **
17275506 GAACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * ** *
17275571 T-----------CA-C--CGAAGCATCGTCGGAGAACCTGACCGACCACATTGGGGTTTCGACGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
17275622 ACGGGGGGGCC-GGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17275686 GGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * *
17275751 GGTTTGCTGCTAGTAGCCATGAAAGTGTTTGAAATGGGGACACGTTTTTCAAATGGTCACGAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
17275816 CTTGTAC-CTTTCGACTTTTTAGATGAATTTTTTTATGCATGCCATCAAAAATACAAGGATCACG
456 CTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
17275880 TCTA--ATAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAG
520 TCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*** * *
17275943 TTTTGGAAATCATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
17276008 GGACTATTGTATGAATTTACAAGCCATAAAAACGGTATTGGCACACAGAAATATGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * **
17276073 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGTGTAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
** * * *
17276138 TTGCCCGCTCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCCTGTCT
779 CCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * *** *
17276203 AAGATCAGATCTGACTGAGGGTTGTGGCAGCAAAATCGGTAGCATGTAGAGGGGGATCCC-A
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA-CCCGG
* * * * **
17276264 CCGAACCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTTCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17276329 TTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * *
17276394 GGACTAGATCGCGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * ** * * * *
17276459 TCGTCGGGGCACCATCGTTGGAGCATCGCCAGAGAACCTGACCGGTGGCATTTGGCTTACGGCGA
196 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
17276524 TCAGGGGGGCC-GGGGGGTGTGCGTACATGATGTCCGATGGGTGCTGGTACTTGGCTCTTATATT
261 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
17276588 AGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAAATTTTACA
326 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
17276653 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
391 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
17276718 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGT
456 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * * *
17276783 CTA--ATAGTTTATGGCCAAAAATCCTTCCAAAAAAATTATAAAAAATCTCGAACCGCAAAAAGT
521 CTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* * *
17276846 TTCAAAAATCGTGGAAAATACAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
585 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
17276911 GACAATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCT
650 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * *
17276976 AAACCCACTTACCTCCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
715 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* *
17277041 CGCCCGCCTGCCCGCACGCTCGTTTCGTCGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTA
780 CGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *** * *
17277106 AGATCAGACCGGACCGACGGTTGCGATAGCAGAATCGGCAGCATGTAGAGGGGCACCCGA
844 AGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * * * *
17277166 CCGGTCCCCGGCTTACGCATCCCGCCTCTCTGGCCGACTGAGTGCCCGTACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17277231 TTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCTAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
17277296 AGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
17277361 TC-CTCGGGGCACCGTCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCG
196 TCGC-CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
17277425 ATCGGGGGGGCCGAGAGGGGGGTGTCCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTA
260 ATCGGGGGGGCC--G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
17277490 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCCTTAAAGAGAATTTGAGATTT
322 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
17277555 TACAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCGCA
387 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
17277620 AAATCTTGTACACTACAAGTTTTTAGCTGAATTTTATTGTGCATGCCTACAAAAATACAAGGATC
452 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** *
17277685 ACGTCTACCAAGTTTGGTACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
517 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* ** * * * *
17277750 TGTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCATGTGAAGGCTTA
582 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * *
17277815 AGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTG
647 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *
17277880 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCTCATCCCGTCTCTCTGGTCGGCGTAGT
712 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* ** * * * *
17277945 GCCCGCCCACCCATCCGCCCGCTCGTTTCGTCTGTTTGCTTAGGCATACAGAGTTCATTCCTAGT
777 GCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * ** * * * *
17278010 CTATGATCCA-ACC-GAATCAAGGGTTACGACAGCAGGATTGATAGTA-AGTAGAGGGGTACCTG
841 CTAAGAT-CAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACA-CAGAGGGGGACCCG
17278072 G
903 G
* * * * * *
17278073 -CTGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCTCACACTCGTTTCGTGG
1 TC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
17278137 CTTCACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
17278202 CGGATCGGACCGTGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTACCGCATTTTTC
130 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * * *
17278267 TTCACCGAGGTACCATCTTCGAAGCATCACCGAAGAACCTCACTGACGGCATTGGGGTTCCGACG
195 TTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
17278332 ATTGGGGGGGCCAGGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
260 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
17278397 TGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTC
325 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
17278462 AGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCCCAAAA
390 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
17278527 TCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACG
455 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** * * **
17278592 TCTACCAAGTTTGGGGTAAAAACACCTTCCGAAAAAATTTTAAAAAATC-CTAAACCATAAAAAG
520 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
*
17278656 GTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
584 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * ** * *
17278721 GGTCCATTGTATGAATTTACAGGTAATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGCC
649 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
17278786 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGC
714 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * * *
17278851 CCGCCCGCCCGCCCACTCGCTCATTTCGTCGATTGGCTTAGGCATATGAAGTTCATTCTCAGTCT
779 CCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * ** * **
17278916 AAGATCGGACCACATTGAGGGTTGCAGCAATAGGATCGGTAGCACACAGAGGGGGACCCAA
843 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * * **
17278977 CCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGTACATTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17279042 TTGACTTAGGAATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
17279107 GGACCGGACCAAGGGTGGCAGCAGCACATGTTGGGCTCGGGCATGT
131 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
17279153 TTGGGGCCAA
Statistics
Matches: 13492, Mismatches: 1533, Indels: 571
0.87 0.10 0.04
Matches are distributed among these distances:
831 70 0.01
833 1 0.00
835 3 0.00
836 2 0.00
837 3 0.00
842 1 0.00
843 55 0.00
844 2 0.00
845 2 0.00
846 1 0.00
847 1 0.00
848 253 0.02
849 2 0.00
851 2 0.00
852 2 0.00
853 3 0.00
854 1 0.00
855 197 0.01
856 2 0.00
857 151 0.01
858 237 0.02
859 224 0.02
860 50 0.00
861 2 0.00
862 140 0.01
863 4 0.00
865 1 0.00
866 4 0.00
868 3 0.00
869 1 0.00
873 1 0.00
874 102 0.01
875 245 0.02
876 84 0.01
877 3 0.00
878 1 0.00
879 148 0.01
880 42 0.00
881 146 0.01
882 1352 0.10
883 212 0.02
884 6 0.00
885 1 0.00
886 296 0.02
887 194 0.01
888 110 0.01
889 188 0.01
890 726 0.05
891 729 0.05
892 910 0.07
893 7 0.00
894 21 0.00
895 13 0.00
896 112 0.01
897 215 0.02
898 192 0.01
899 37 0.00
900 791 0.06
901 19 0.00
902 1279 0.09
903 1023 0.08
904 1772 0.13
905 296 0.02
906 248 0.02
907 546 0.04
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
GCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
Found at i:17267519 original size:26 final size:26
Alignment explanation
Indices: 17267482--17267534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17267472 GTTGACTGAG
*
17267482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17267508 GCATACGAAGTTCATTCTCGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17267534 G
1 G
17267535 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17268421 original size:26 final size:26
Alignment explanation
Indices: 17268385--17268437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17268375 GTTGACTTAG
*
17268385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17268411 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17268437 G
1 G
17268438 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17271038 original size:26 final size:26
Alignment explanation
Indices: 17271008--17271060 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17270998 GTTGACTTAG
17271008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17271034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17271060 G
1 G
17271061 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17271920 original size:26 final size:26
Alignment explanation
Indices: 17271890--17271942 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17271880 GTTGACTTAG
17271890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17271916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17271942 G
1 G
17271943 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17272822 original size:26 final size:26
Alignment explanation
Indices: 17272793--17272845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272783 GTTGACTTAG
*
17272793 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17272819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17272845 G
1 G
17272846 ATCGGTCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17273156 original size:903 final size:903
Alignment explanation
Indices: 17270569--17279152 Score: 11155
Period size: 882 Copynumber: 9.6 Consensus size: 903
17270559 ATTTTCAAAT
* * * * * *
17270569 GTCTACGAAGTGTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
17270634 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
17270699 GGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAGGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
*
17270764 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGC
196 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
*
17270829 CCGCCCGCCCG--CG--C-C-C---TCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCT
261 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
17270885 AAGATCAGACTGAACTGAGGGTT----------G--CGGTAGCACAAAGAGGGGGATCCGACCGA
326 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCGA
* *
17270938 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCATGGGTTGA
391 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
17271003 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
456 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
17271068 TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGC
521 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
*
17271133 CAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
586 CGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
17271198 GGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
651 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
17271263 CCTATCCCTCCTCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
716 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
17271328 GCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCCTGT
781 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
17271393 TCACTTCGAGTTTTTAGCTGAATTTTTTTGTGAACGCAAAAAAAAATGCAAGGATCAC
846 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
17271451 GTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAATAATTTTAAAAAATCTCGAACCGCAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
17271516 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * **
17271581 GGACCATTGTTTAAATTTACAAGAGATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
*
17271646 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGC
196 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
*
17271711 CCGCCCGCCCG--CG--C-C-C---TCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCT
261 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
17271767 AAGATCAGACTGAACTGAGGGTT----------G--CGGTAGCACAAAGAGGGGGATCCGACCGA
326 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCGA
* *
17271820 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCATGGGTTGA
391 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
17271885 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
456 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
17271950 TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGC
521 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
*
17272015 CAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
586 CGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
17272080 GGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCC
651 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
17272145 CCTATCCCTCCTCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
716 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
17272210 GCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCCTGT
781 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * ** * *
17272275 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAACGTAAAAAAAAATGCAAGGATCAC
846 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
17272333 GTCTTCCAAGTTTGGGGCCAAAACTCGTTCCGAAATAATTTTAAAAAATCTCGAACCGCAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
17272398 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * **
17272463 GGACCATTGTTTAAATTTACAAGAGATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
* * **
17272528 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGTGTAGTGC
196 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * * *
17272593 CCACCCTCCCACCCGCTCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
261 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
17272658 AAGATC-GAACCAGATTGAGGGTTGCGGTAGCAGGATCGATAGTACACAGAGAGGGACCCGACCG
326 AAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCG
* *** * **
17272722 ATCCCCAGCTTGCGCATCCCGCCCCTCTGATTGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTG
390 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
17272787 ACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGT
455 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
17272852 CTGGACCGAGGGCTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
520 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * * * *
17272917 TCGGGGCACTATCACCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGAT-T
585 TCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* **
17272981 GGGGGGCCGGGGGGGTGTGCGCACAGGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGC
650 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
**
17273046 CCCCTATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGT
714 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
17273111 TTGCTGCCAGTAGCAATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
779 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
17273176 GTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGG---A-
844 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * * *
17273232 -TCTACCAAGTTTGGGGCTAAAACTCCTT-CGAAAAAAATTAAAAAAAATCCCAAACCGTAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * * * *
17273295 GTTTCAAAAATCGTGAAAAATGGAAAACGAGGCGCCTTGCCATGTAACTTCACATGAAGGCTTAA
65 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
17273360 GGGACCATTGTATTAATTTACAAGCCATACAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
130 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGC
* * * *
17273425 CTAAACCCACCTACCA-CCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTT
195 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
17273489 CCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGG-TTAGGCATACAGAGTTCATTGCTAGTC
260 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * **
17273553 TAAGATTAGATCGGACTGAAGGTTGCGGCAGCAGGATGGGCAGCATGA-AGAGGGGGACCCGGTC
325 TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCA-CATAGAGGGGGACCCGACC
** ** * *
17273617 GAAACCCGGCTTGCGCATCCCGTTCTTCTGGCCGGCTGAGGGGCCCGCACGCTCGTTTCGTGGGT
389 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGT
* * *
17273682 TGACGTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
453 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
17273747 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTT
518 GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
17273812 CGTC--GG-AGCAT---C---G--T---CGAAGAACCTGACCGGTGGCATTTGGGTTCC-AGCGA
583 CGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGA
* * *
17273862 TC-GGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATTGGTGCTGGTACTTGGCCCTTATATTG
647 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
17273926 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAG
712 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * **
17273991 TTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGGAAAATC
777 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
17274056 TAGTGCACCTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
842 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17274118 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAATTTTAAAAAATCTCAAACTGTAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
17274182 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAGG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ** *
17274247 GGACCATTGTATGAATTTACAAGCCAAAAAAATATCATTGGCA-CATAGAAATATGAAGATGTGC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGC
* *
17274311 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTG
195 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * * * *
17274376 CCTGCCTGCCCACCCGCCCGCTCCTTTCGTCGATTAGCTTAGCCAT-CGGAGTTCATTCCCAGTC
260 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * ***
17274440 TAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAAGGGGACCCGGGTG
325 TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCG
* * * * * * * * * *
17274505 ATCCCCGGCTTGCACATCCTGTCCCTCTAGCTGGTTGAGCGACTGCACGCTCGTTTCATGCGTTG
390 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
17274570 ACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGCTCATTCCTAGTCTAAGATCAGA
455 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * * *
17274635 CCAGATCGAGGGTTGCGGCTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCG
520 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** * *
17274700 TCGGGGCACTATCGTCGGAGCATCACCGGAGAACCTGACCTGCGGCATTGGGGTTCCGACAATCG
585 TCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
17274765 GGGGGGCCGAAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
650 GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* ** *
17274830 CCCCTATCCCCCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTACAGGT
714 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
17274895 TTGATGCCAGTAGCCATTAAAGCGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAGATCTT
779 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
17274960 GTACACTT-GAAGTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGAATCAC
844 GTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17275020 GTCTACCAAGTTTGGGGTCAAAACTCCTACCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* ** *
17275085 TTTCAGAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
17275150 GGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
* * *
17275215 TAAGCCCACCTACCACACTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGT--
196 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
17275278 --GCCCGCCCGCCCGCCCGATCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
261 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * ** *
17275341 AAGATTGGATCGGACCGAGGGTTGCTGCAGCATGATCGGCAGCACGCAGAGGGGGACCC-AGTCG
326 AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGA-CCG
* * * *
17275405 ATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAAGCTTGTTTC----GTTG
390 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
17275466 --TT-----T---GA---C-TT---AG-----GCATACAGAGTTCATTCCCAGTCTAAGATCGAA
455 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
17275509 CTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG--TCATATTT-TTC-
520 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** * ** * *
17275570 T----------TCACCGAAGCATCGTCGGAGAACCTGACCGACCACATTGGGGTTTCGACGAACG
585 TCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
*
17275625 GGGGGGCCGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
650 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17275690 CCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
715 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * *
17275755 TGCTGCTAGTAGCCATGAAAGTGTTTGAAATGGGGACACGTTTTTCAAATGGTCACGAAATCTTG
780 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
17275820 TAC-CTTTCGACTTTTTAGATGAATTTTTTTATGCATGCCATCAAAAATACAAGGATCAC
845 TACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
17275879 GTCTA--ATAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAA
1 GTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
*** * *
17275942 GTTTTGGAAATCATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAA
65 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
17276007 GGGACTATTGTATGAATTTACAAGCCATAAAAACGGTATTGGCA-CACAGAAATATGAAGATGTG
130 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTG
* * **
17276071 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGTGTAGT
194 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
** * * * *
17276136 GCTTGCCCGCTCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCCTGT
259 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** **
17276201 CTAAGATCAGATCTGACTGAGGGTTGTGGCAGCAAAATCGGTAGCATGTAGAGGGGGATCCC-AC
324 CTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGA-CCCGAC
* * * **
17276265 CGAACCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCTTCCGCACGCTCGTTTCGTGGGT
388 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
17276330 TGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
453 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
17276395 GACTAGATCGCGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
518 GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
*** * * * * * * *
17276460 CGTCGGGGCACCATCGTTGGAGCATCGCCAGAGAACCTGACCGGTGGCATTTGGCTTACGGCGAT
583 CGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * *
17276525 CAGGGGGGCCGGGGGGTGTGCGTACATGATGTCCGATGGGTGCTGGTACTTGGCTCTTATATTAG
648 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
17276590 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAAATTTTACAGG
713 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
17276655 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
778 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
17276720 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
843 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * * *
17276781 GTCTA--ATAGTTTATGGCCAAAAATCCTTCCAAAAAAATTATAAAAAATCTCGAACCGCAAAAA
1 GTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * *
17276844 GTTTCAAAAATCGTGGAAAATACAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
65 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
17276909 GGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGC
130 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGC
* * *
17276974 CTAAACCCACTTACCTCCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
195 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * *
17277039 CCCGCCCGCCTGCCCGCACGCTCGTTTCGTCGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTC
260 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * * ** *
17277104 TAAGATCAGACCGGACCGACGGTTGCGATAGCAGAATCGGCAGCATGTAGAGGGGCACCCGACCG
325 TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCG
* * * * * *
17277169 GTCCCCGGCTTACGCATCCCGCCTCTCTGGCCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTG
390 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
17277234 ACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGA
455 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
17277299 CCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTTCC
520 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
17277364 TCGGGGCACCGTCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCG
585 TCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
17277429 GGGGGGCCGAGAGGGGGGTGTCCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATT
650 GGGGGGCC----GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
17277494 GGCCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCCTTAAAGAGAATTTGAGATTTTACA
711 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
17277559 GGTTTACTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAAT
776 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
17277624 CTTGTACACTACAAGTTTTTAGCTGAATTTTATTGTGCATGCCTACAAAAATACAAGGATCAC
841 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * *
17277687 GTCTACCAAGTTTGGTACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAATG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
** * * * *
17277752 TTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAG
66 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17277817 GGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
* * * *
17277882 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCTCATCCCGTCTCTCTGGTCGGCGTAGTGC
196 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* ** * * * *
17277947 CCGCCCACCCATCCGCCCGCTCGTTTCGTCTGTTTGCTTAGGCATACAGAGTTCATTCCTAGTCT
261 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * * * *
17278012 ATGATCCA-ACC-GAATCAAGGGTTACGACAGCAGGATTGATAGTA-AGTAGAGGGGTACCTGGC
326 AAGAT-CAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGTAGCACA-TAGAGGGGGACCCGAC
* * * * * * * *
17278074 TGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCTCACACTCGTTTCGTGGCT
388 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
17278139 TCACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
453 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
17278204 GA-TCGGACCGTGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTACCGCATTTTTCT
518 GACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * ** * * * * *
17278268 TCACCGAGGTACCATCTTCGAAGCATCACCGAAGAACCTCACTGACGGCATTGGGGTTCCGACGA
582 TCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
17278333 TTGGGGGGGCCAGGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
647 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17278398 GGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCA
711 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
17278463 GGTTTGCTTCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCCCAAAAT
776 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
17278528 CTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
841 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * * **
17278591 GTCTACCAAGTTTGGGGTAAAAACACCTTCCGAAAAAATTTTAAAAAATC-CTAAACCATAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAA
*
17278655 GGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
65 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * ** * *
17278720 GGGTCCATTGTATGAATTTACAGGTAATAAAAATGGCATTGGCATGCAGAAATACGAAGATGTGC
130 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGC
* *
17278785 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTG
195 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * * * *
17278850 CCCGCCCGCCCGCCCACTCGCTCATTTCGTCGATTGGCTTAGGCATATGAAGTTCATTCTCAGTC
260 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * ** * * *
17278915 TAAGATCGGACCACATTGAGGGTTGCAGCAATAGGATCGGTAGCACACAGAGGGGGACCCAACCA
325 TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCG
* * **
17278980 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGTACATTCGTTTCGTGGGTTG
390 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
17279045 ACTTAGGAATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGA
455 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
17279110 CCGGACCAAGGGTGGCAGCAGCACATGTTGGGCTCGGGCATGT
520 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
17279153 TTGGGGCCAA
Statistics
Matches: 6781, Mismatches: 793, Indels: 234
0.87 0.10 0.03
Matches are distributed among these distances:
857 1 0.00
858 224 0.03
859 223 0.03
860 52 0.01
862 151 0.02
863 4 0.00
866 4 0.00
868 2 0.00
870 1 0.00
871 3 0.00
872 6 0.00
873 1 0.00
874 72 0.01
876 2 0.00
879 3 0.00
880 2 0.00
882 1343 0.20
883 41 0.01
884 2 0.00
885 1 0.00
886 304 0.04
887 196 0.03
888 89 0.01
889 4 0.00
890 7 0.00
891 59 0.01
892 2 0.00
894 5 0.00
895 3 0.00
896 104 0.02
897 226 0.03
898 184 0.03
899 35 0.01
900 145 0.02
901 14 0.00
902 1104 0.16
903 680 0.10
904 697 0.10
905 3 0.00
906 232 0.03
907 547 0.08
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
Found at i:17273726 original size:26 final size:26
Alignment explanation
Indices: 17273690--17273742 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17273680 GTTGACGTAG
17273690 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
17273716 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17273742 G
1 G
17273743 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17274606 original size:26 final size:26
Alignment explanation
Indices: 17274576--17274628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17274566 GTTGACTTAG
*
17274576 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGCTCATTCCCAGTATAA
* *
17274602 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTATAA
17274628 G
1 G
17274629 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTATAA
Found at i:17276374 original size:26 final size:26
Alignment explanation
Indices: 17276338--17276390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17276328 GTTGACTTAG
17276338 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
17276364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17276390 G
1 G
17276391 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17277269 original size:26 final size:26
Alignment explanation
Indices: 17277240--17277292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17277230 GTTGACTTAG
*
17277240 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
* *
17277266 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
17277292 G
1 G
17277293 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:17278183 original size:26 final size:26
Alignment explanation
Indices: 17278147--17278199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17278137 CTTCACTTAG
17278147 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
17278173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17278199 G
1 G
17278200 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17279093 original size:26 final size:26
Alignment explanation
Indices: 17279053--17279103 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17279043 TGACTTAGGA
*
17279053 ATACGGAGTTAATTCCCAGTCTAAGC
1 ATACGGAGTTAATTCCCAATCTAAGC
*
17279079 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTAATTCCCAATCTAAG
17279104 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAATCTAAGC
Found at i:17279643 original size:26 final size:26
Alignment explanation
Indices: 17279607--17279657 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17279597 TGACTTAGGC
17279607 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
17279633 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17279658 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:17282666 original size:873 final size:870
Alignment explanation
Indices: 17279633--17283782 Score: 5316
Period size: 883 Copynumber: 4.7 Consensus size: 870
17279623 CAGTCTAAGT
* *
17279633 ATACGGAGTTCATTCCCAGTCTAAG-AT-CG-GACCGGACCAAGGGTTGCGACAGCACGTGCTGG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
** * * * *
17279695 GCTCGACCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGCCAGAGCATCGTCGAAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCGTCGGAG
* * *
17279760 AACCTGACCGGCGACATTGGGGTTCTGACAATCGGGGGGGCCAGGAGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GAGGGGGTGTGCGCACATGAT
*
17279825 GTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACT
* * * * * *
17279890 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATGAAAGTGTTTAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGA
* * * *** *
17279955 AATGAGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACATTTTTTGTTTTTAGCTGAAATTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * * *
17280020 TTGTACACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCAAA
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
17280085 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAATCGTGAAAAATAGAAAACGAGTCATC
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
17280150 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17280215 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGTCTTG
581 CATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17280280 CGCATCCCGTCTCTCTGGTCGGCGTAGAGCCCGCCCACCCG-CTCGTTTCGTCAGTTGGCTTAGG
646 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * * *
17280344 CAGACGTAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGACAGCAAGATCGACAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * *
17280409 CATGCAGAGGGGGACCAGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
776 CACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
17280474 TGCACAC--TCGTTTCGTGGGTTGACTTAGGC
841 --CACACGTTCATTTCGTGGGTTGACTTAGGC
* * *
17280504 ATACGGAGTTCATTACCAGCCTAAGCATATGAAGTGACCGGACCGAGGGTTGCGACAGCACATGC
1 ATACGGAGTTCATTCCCAGTCTAAGCATACG-A--GACCGGACCGAGGGTTGCGACAGCACATGC
* * * *
17280569 TGGGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCG
63 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACGGAGCATCGTCG
* * * *
17280634 GAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGCCTGGGGGGTGGGCTGTGCGCAC
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC---GAGG-GGG-TGTGCGCAC
* * *
17280699 ATGATATGCAATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGA
187 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGA
* *
17280764 AAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG
* *
17280829 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
17280894 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-T
381 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * * * *
17280958 TCCAAAGAAATTTTAAAAAATCTTGAACCACAAAAAATGTTGAAAATCATGAAAAATAGAAAACA
446 TCGAAA-AAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTAAAAATCATGAAAAATAGAAAACG
* *
17281023 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATA
509 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATA
*
17281088 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
574 AAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
17281153 CGGCTTGCACATCCCGTCTCTCTAGCCGGGGTAGTGCCCGCCCACCC-ACTCGTTTCGTCGGTTG
639 CGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCTCGTTTCGTCGGTTG
* * *
17281217 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCAAAGGTTGGGGCAGTAGG
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGGCAGCAGG
* * * *
17281281 ATCGACAGCACG-TAGAAGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGA
768 ATCGACAGCACGCT-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
17281345 CTGAGTGCCCGTACGTTCATTTCGTGGGTTGACTTAGGC
832 CTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGC
* **
17281384 AGACGGAGTTCATTCCCAAACTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACTGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A--CC--G-----GA-C---C--GA--G
* * * * * *
17281449 ATAGTTGCGGCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGG--
45 --GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * **
17281512 ----CAC----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGTTGATCGGGGGGCCG-
108 CCATCACGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGA
* * *
17281568 GGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCC
173 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
17281633 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-TCCA
237 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT-CA
*
17281697 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTC
301 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
17281762 GAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACTAAGTTTT
366 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTT
** *
17281827 TTGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAATCATG
430 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAATCATG
* *
17281892 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACAATTGTATGA
495 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
*
17281957 ATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACTCACCTACC
560 ATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * *
17282022 ACCGTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCT
625 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCC-
* * * ** *
17282087 GTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTC-GATCTAAGATCAGACTGGACCG
689 --TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCA
* * ** * * * * *
17282151 AGGGTTACGGCAACACCATCGGCAGCACACTGAGGGGGACCCGATCGATCCCCGGCTAGCACATC
751 AGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
*
17282216 CCGCCCCTCTGGCCGGCTGAGCACCCACACGTTCATTTCGTGGGTTGACTTAGGC
816 CCGCCCCTCTGGCCGGCTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGC
* *
17282271 ATACGGAGTTCATTCCCAGTCTAAG-AT-CG-GACCGGACCGAGGGTTGTGACAGCACATGTTGG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACGAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * ** *
17282333 GCTCAGACATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACTATCACAGGAGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC-GGAGCATCGTCGGAG
* *
17282398 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCGCATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* *
17282463 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTCGAGAACTAAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
* * *
17282528 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCTTTAAAGTGTCTGCAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
17282593 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17282658 TGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
17282723 ATTTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17282788 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17282853 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
583 TTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * *
17282918 CATCCTGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCTGCCTACCTGCCTGCTCGTTTTGTCGGT
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCA-----C--CC-ACCCG-C--CTCGTTTCGTCGGT
*
17282983 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAG
* *
17283048 GATC-AGCAGCACGCAT-AGGGGGATCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
767 GATCGA-CAGCACGC-TGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
17283111 GGCTGAGCGCCCAGACGCTCGTTTTGTGGGTTAACTTAGGC
830 GGCTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGC
* *
17283152 ATACGGAGTTGATTCCTAGTCTAAGCATACGGAGTTCATTCCTAAACTAAGATCAGACCGGATTG
1 ATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A---C----C---G----GACC-GA--G
*
17283217 AGAGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCA
45 -G-GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** ** * **
17283282 CCATCGTTGGAGCATCACCGGAGAACCTGACTGGCCACATTGGGGTTCCGACGATCGGGGGGCCG
108 CCATC-ACGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
* *
17283347 GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCC
172 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCC
* * *
17283412 CTCA-CAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
236 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
* * *
17283476 GTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTT
301 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
17283541 GAGTTTTTTGCTGAATTTTTTTGTGCTTTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
366 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
17283606 GAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATCAT
431 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTT-AAAAATCAT
* *
17283671 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATG
494 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATG
* **
17283736 AATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
559 AATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGAT
17283783 CCCCAGCCTA
Statistics
Matches: 2859, Mismatches: 311, Indels: 182
0.85 0.09 0.05
Matches are distributed among these distances:
861 51 0.02
863 1 0.00
865 2 0.00
867 4 0.00
870 1 0.00
871 25 0.01
872 106 0.04
873 414 0.14
874 1 0.00
876 8 0.00
877 119 0.04
878 16 0.01
879 269 0.09
880 365 0.13
881 184 0.06
882 6 0.00
883 418 0.15
884 51 0.02
885 11 0.00
886 4 0.00
887 172 0.06
888 3 0.00
889 46 0.02
890 2 0.00
891 2 0.00
893 1 0.00
894 2 0.00
895 1 0.00
896 2 0.00
898 2 0.00
900 53 0.02
902 4 0.00
903 2 0.00
905 1 0.00
906 215 0.08
907 293 0.10
908 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (870 bp):
ATACGGAGTTCATTCCCAGTCTAAGCATACGAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
TGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
GTTCATTTCGTGGGTTGACTTAGGC
Found at i:17283201 original size:26 final size:26
Alignment explanation
Indices: 17283150--17283202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17283140 GTTAACTTAG
* **
17283150 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAAACTAA
17283176 GCATACGGAGTTCATTCCTAAACTAA
1 GCATACGGAGTTCATTCCTAAACTAA
17283202 G
1 G
17283203 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAAACTAA
Found at i:17283880 original size:26 final size:26
Alignment explanation
Indices: 17283851--17283903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17283841 GTTCACTTAG
*
17283851 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGCTCATTCTC-AGTCTAA
*
17283877 GCATACGGAGCTCATTCTCAGTCTAA
1 GCATACAGAGCTCATTCTCAGTCTAA
17283903 G
1 G
17283904 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCTCAGTCTAA
Found at i:17284472 original size:690 final size:698
Alignment explanation
Indices: 17283091--17284472 Score: 2011
Period size: 690 Copynumber: 2.0 Consensus size: 698
17283081 CCCCGGCTTG
* * **
17283091 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCAGACGCTCGTTTTGTGGGTTAACTTAGGCATAC
1 CGCATCCCGACCCTCTGGCCGGCTGAGCGCCCAGACGCCCGTTCCGTGGGTTAACTTAGGCATAC
* * * **
17283156 GGAGTTGATTCCTAGTCTAAGCATACGGAGTTCATTCCTAAACTAAGATCAGACCGGATTGAGAG
66 AGAGTTCATTCCTAGTCTAAGCATACGGAGCTCATTCCTAAACTAAGATCAGACCGGACCGAGAG
*
17283221 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT
131 TTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT
* *
17283286 CGTTGGAGCATCACCGGAGAACCTGACTGGCCACATTGGGGTTCCGACGATCGGGGGGCCGGGGG
196 CGTCGGAGCA-CACC-GAGAACCTGACTGG-C-CATTGGGGTTCAGACGATCGGGGGGCCGGGGG
* **
17283351 GGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCA
257 GGTATGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCAATCA
17283416 CAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAC
322 CAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAC
* * *
17283481 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTT
387 AATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTT
* * * * *
17283546 TTTTGCTGAATTTTTTTGTGCTTTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCC
452 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCC
** *
17283611 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATCATGAAAA
517 AAAACTCCAACCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATCATGAAAA
17283676 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAATTT
582 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAATTT
* ** *
17283741 ACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGATCCCCAGCCTA
647 ACAAGCAATAAAAATGCCATTGGCACACAAAAATATGAAGATCCCCAGCCTA
*
17283793 CGCATCCC-ACCCTCTGGCCGGCTGAGCGCCC-GCACGCCCGTTCCGTGGGTTCACTTAGGCATA
1 CGCATCCCGACCCTCTGGCCGGCTGAGCGCCCAG-ACGCCCGTTCCGTGGGTTAACTTAGGCATA
** *
17283856 CAGAGTTCATTCCTAGTCTAAGCATACGGAGCTCATT-CTCAGTCTAAGATC-GAACTGGACCGA
65 CAGAGTTCATTCCTAGTCTAAGCATACGGAGCTCATTCCT-AAACTAAGATCAG-ACCGGACCGA
* * *
17283919 GGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCTTTTTTCTTCGTCGGGGCAC
128 GAGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
* *
17283984 CATCGTCGGA-CA-ACC-TG-ACC-GAC-GG-CA-TGGGGTTTCAG-TGATCGGGGGGCCGGGGA
193 CATCGTCGGAGCACACCGAGAACCTGACTGGCCATTGGGG-TTCAGACGATCGGGGGGCCGGGG-
* * * * *
17284040 GGGTATGTGCACATTATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATC
256 GGGTATGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCAATC
* * *
17284105 ATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
321 A-CAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
17284170 GCAATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
385 ACAATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAG
*
17284235 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
450 TTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGA
* * *
17284300 GCCAAAACTCCAACCAAAAAAATTTT-AAAAATCTCGAACCGC-AAGAAGTTTCGAAAATCATGA
514 GCCAAAACTCCAACCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATCATGA
* * * * * *
17284363 AATATATAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
579 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAA
* *
17284428 TTTACAAGCCATAAAAATGCCTTTGGCACACAAAAATATGAAGAT
644 TTTACAAGCAATAAAAATGCCATTGGCACACAAAAATATGAAGAT
17284473 GTGCCTAAAC
Statistics
Matches: 612, Mismatches: 61, Indels: 26
0.88 0.09 0.04
Matches are distributed among these distances:
689 21 0.03
690 181 0.30
691 159 0.26
692 57 0.09
693 2 0.00
694 3 0.00
695 3 0.00
696 1 0.00
698 3 0.00
700 6 0.01
701 168 0.27
702 8 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (698 bp):
CGCATCCCGACCCTCTGGCCGGCTGAGCGCCCAGACGCCCGTTCCGTGGGTTAACTTAGGCATAC
AGAGTTCATTCCTAGTCTAAGCATACGGAGCTCATTCCTAAACTAAGATCAGACCGGACCGAGAG
TTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT
CGTCGGAGCACACCGAGAACCTGACTGGCCATTGGGGTTCAGACGATCGGGGGGCCGGGGGGGTA
TGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCAATCACAAA
CCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATT
AAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAA
CTCCAACCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAAGTTTCAAAAATCATGAAAAATAA
AAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAATTTACAA
GCAATAAAAATGCCATTGGCACACAAAAATATGAAGATCCCCAGCCTA
Found at i:17285467 original size:26 final size:26
Alignment explanation
Indices: 17285430--17285479 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17285420 GTTCACTTAG
17285430 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17285456 GCATACGGAGTTCATTCCCAATCT
1 GCATACGAAGTTCATTCCCAATCT
17285480 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17286140 original size:685 final size:690
Alignment explanation
Indices: 17284682--17286538 Score: 3161
Period size: 685 Copynumber: 2.7 Consensus size: 690
17284672 CCGGCTTGTG
* * * * * * *
17284682 CATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
* * ** * * * * *
17284747 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGATCGAGGTTT
66 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
* * * * * * *
17284812 GCGACAGCACATACTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
131 GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
* * * * * * * * *
17284877 TCGGAGAACTTGACCGGCGGCATTAGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACAT
196 TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCCGGGGGGTGTGCGCACAT
* * * * **
17284942 GATGC-GCAATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAG
261 GAT-CTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAG
* *
17285006 AACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
325 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
17285071 CTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT
390 CTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
17285136 TGTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCAACTAAGTTTGGGCCCAAAACTCCTTC
455 T-TTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCAACTAAGTTTGGGCCCAAAACTCCTTC
17285201 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAATGAG
519 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAATGAG
*
17285266 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
584 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
17285331 AATGGCATTGGAATGCAGAAATATGAAGATCCTTGGCTTGCA
649 AATGGCATTGGAATGCAGAAATATGAAGATCCTTGGCTTGCA
17285373 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
1 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
17285438 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
66 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
17285503 GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
131 GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
17285568 TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCCGGGGGGGTGTGCGCACA
196 TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCC-GGGGGGTGTGCGCACA
17285633 TGATCTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCA-CAAACCTCAAG
260 TGATCTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAG
*
17285697 AACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
325 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
17285762 CTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
390 CTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
17285827 TTTTTGTGCTTGCC-AAAAAAATACAAGGATCACGTCAACTAAGTTTGGG-CCAAAACTCCTTCC
455 TTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCAACTAAGTTTGGGCCCAAAACTCCTTCC
*
17285890 -AAAAAA-TTTAAAAAATCCCGAATCGCAAAAAG-TTTTAAAATCATGAAAAATAGAAAATGAGT
520 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAATGAGT
17285952 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
585 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
17286017 ATGGCATTGGAATGCAGAAATATGAAGATCCTTGGCTTGCA
650 ATGGCATTGGAATGCAGAAATATGAAGATCCTTGGCTTGCA
17286058 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
1 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
17286123 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
66 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
17286188 GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
131 GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
17286253 TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCCGGGGGGTGTGCGCACAT
196 TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCCGGGGGGTGTGCGCACAT
17286318 GATCTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGA
261 GATCTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGA
*
17286383 ACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
17286448 CGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATT
391 TGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
17286513 TGTTTATGCATGCCAAAAAAAATACA
456 T-TTTGTGCTTGCCAAAAAAAATACA
17286539 GCACGCAGAG
Statistics
Matches: 1108, Mismatches: 53, Indels: 14
0.94 0.05 0.01
Matches are distributed among these distances:
684 69 0.06
685 514 0.46
686 35 0.03
687 17 0.02
688 14 0.01
689 35 0.03
690 13 0.01
691 348 0.31
692 63 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (690 bp):
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTTGGTTCACTTAGGCATACGA
AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTGAGATCGGACCAGACCAAGGGTT
GCGCCAGCACATGCTGGGCTTGAGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
TCGGAGAACCTGACTGGCGACATTGGGGTTTCGGCGATCAGGGGAGCCGGGGGGTGTGCGCACAT
GATCTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCAACTAAGTTTGGGCCCAAAACTCCTTCCA
AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAATGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGAATGCAGAAATATGAAGATCCTTGGCTTGCA
Found at i:17286152 original size:26 final size:26
Alignment explanation
Indices: 17286115--17286164 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17286105 GTTCACTTAG
17286115 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17286141 GCATACGGAGTTCATTCCCAATCT
1 GCATACGAAGTTCATTCCCAATCT
17286165 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17287813 original size:26 final size:26
Alignment explanation
Indices: 17287773--17287823 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17287763 TGACTTAGGA
*
17287773 ATACGGAGTTAATTCCCAGTCTAAGC
1 ATACGGAGTTAATTCCCAATCTAAGC
*
17287799 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTAATTCCCAATCTAAG
17287824 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAATCTAAGC
Found at i:17288795 original size:159 final size:158
Alignment explanation
Indices: 17288504--17288842 Score: 405
Period size: 159 Copynumber: 2.1 Consensus size: 158
17288494 TCATTTCGTC
* * * *
17288504 GGTTGGCTTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACGACA
1 GGTTGACTTAGGCATACAG-AGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGACA
* ** * *
17288568 GCAGGAATGGCAGCACGCAGAAAGGGACCCGGCCAATCCCCGACTTGTGCATCCCGGCCCTCTGG
65 GCAGGAATGGCAGCACCCAGAAAGGGACCCGGCCAATCCCCGACTTGCACATCCCGCCCCTCTAG
** * *
17288633 CCGACTGAGCGCT-CGTGTTCTCGTTTTGTG
130 CCGACTGAGCGCTCCACG-T-TCATTTTATG
* * * * * *
17288663 GGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAGGATCAGATCGGACCGAGGGTTGCGATAG
1 GGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGACAG
** * *
17288728 CAGG-ATCGGCAGCACCCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTAG
66 CAGGAAT-GGCAGCACCCAGAAAGGGACCCGGCCAATCCCCGACTTGCACATCCCGCCCCTCTAG
17288792 CCGACTGAGCGCTCCCACGTTCATTTTATG
130 CCGACTGAGCGCT-CCACGTTCATTTTATG
17288822 GGTTGACTTAGGCATACAGAG
1 GGTTGACTTAGGCATACAGAG
17288843 GGTTACGGAA
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
158 2 0.01
159 147 0.96
160 2 0.01
161 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGACAG
CAGGAATGGCAGCACCCAGAAAGGGACCCGGCCAATCCCCGACTTGCACATCCCGCCCCTCTAGC
CGACTGAGCGCTCCACGTTCATTTTATG
Found at i:17289713 original size:26 final size:26
Alignment explanation
Indices: 17289676--17289728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289666 GTTGACTTAG
*
17289676 GCATACAGAGTTCATTCCTAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
17289702 GCATAC-GCAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGCCTAA
17289728 G
1 G
17289729 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:17291475 original size:26 final size:26
Alignment explanation
Indices: 17291439--17291491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17291429 GTTGACTTAG
*
17291439 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17291465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17291491 G
1 G
17291492 ACCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17291559 original size:40 final size:40
Alignment explanation
Indices: 17291504--17291583 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
17291494 CGGACTGGAC
17291504 CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCT
1 CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCT
17291544 CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCT
1 CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCT
17291584 GGTGCCATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.15, C:0.25, G:0.40, T:0.20
Consensus pattern (40 bp):
CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCT
Found at i:17294488 original size:26 final size:26
Alignment explanation
Indices: 17294458--17294510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294448 GTTGACTTAG
17294458 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17294484 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17294510 G
1 G
17294511 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17294695 original size:899 final size:893
Alignment explanation
Indices: 17291783--17295169 Score: 4181
Period size: 899 Copynumber: 3.8 Consensus size: 893
17291773 TAAAGAGCAT
* * * * * *
17291783 TTGACTTGGGCAGACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
1 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* *
17291848 AGA-CTGGACCAACAGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TGACATTTTT
66 AGATCTGGACCAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTT
* *
17291911 CTTCGTCGGGGCACCATCG-C----C-T-----GAGAACCTGACCGGTGGCATTGGGGTTCC-GT
129 CTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA
* * * * * *
17291964 CGGTTGGTGGGCC-GGGGGGTATGCA-CACATGATGTGCAACGGGTGCTGGTACTTGGCCCTTAT
194 CGATCGGGGGGCCGGGGGGGTGTG-AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17292027 ATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * * * * *
17292092 ACAGGTTTGTTGCCAGTAGCCATTAAAATGTCTGAAATGTGGACAATTTCTTCAAATGGTCCCAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
17292157 AATCTTGTACACTTCGAGCTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGTATCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * * * *
17292222 CATCTACCAACTTTGGGGCCAAAAGTCCATCCAAAAAAATTTTAAAAAGTCCCAAACCGTAAAAA
452 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
*
17292287 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
517 GTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
17292352 GGGACCATTGTATAAATTTTCAAGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGC
581 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
*
17292417 CTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCC-AGCGTAGT
646 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT-GCCGA-CGTAGT
* *
17292481 GCCCGCCCGCCCACCCGCTCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
709 GACCGCCCG-CCACCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * * * * * * * * * *
17292546 CTAAGATTTGATCGGACCGAGGGTTTCGGCAACAAGATTGACAGTACGCAGAGGAGGACCCGGCT
769 CTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATTGGCAGCACGCAAAGGGGGACCC-GCC
* * ** * * * * * *
17292611 GATCACTGGCTTGCGCATTTCGCCCCTCAGGCCGGTTGAGCGCCAGGACACTTGTTTCGTTGG
833 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCAGCACGCTCGTTTC-ATGG
17292674 TTGACTTAGGCATAC-GAAGTTCATTCCCAG--T---C---CA-AG---------AG-C---G--
1 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * **
17292714 --GATC-GGACCACAGGTTGAGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCATATTTTT
65 CAGATCTGGACCA-AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
17292776 CTTCATCGGGGCACCGTCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTC-GA
129 CTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA
* *
17292840 CGATCGGAGGGGCCGGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
194 CGATCGG-GGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
17292905 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
17292970 ACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17293035 AATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGACAACAAAAATACAAGGATCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* **
17293100 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTGAACCGCAAAAA
452 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
** * *
17293164 GATTGGAAAATCGTGAAAAA-AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAA
517 G-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
17293228 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
581 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * *
17293293 CTAAACCCACCTACCACCCTATCGATTCAAGGCTTACGCATCCCGTCTCTTTGGCCGACGCAGTG
646 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT-GCCGACGTAGTG
* * *
17293358 CCAGCCCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
710 --A--CCGCCCGCC-ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
17293423 TAAGATCGGACCAGATCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGCCG
770 TAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATTGGCAGCACGCAAAGGGGGACCC-GCCG
* ** * * * **
17293488 GTCCCCAACTTGCGCATCCCGCCCCACTGGCCGACTGAGTGCCTGCACGCTCGTTTTGTGGG
834 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCAGCACGCTCGTTTCAT-GG
* * * *
17293550 TTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAATATC
1 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* ** * *
17293615 AG-GCTGGACCGCGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGTCGCATTTTTC
66 AGATCTGGACC-AAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * * **
17293679 TTCGCCGGGTCACCATCACCGAACCATCATCGGAGAACCTGACCCGCAGCATTGGGGTT-CAAAC
130 TTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAC
** * * * * * * **
17293743 GGCCGAGGTGGCCGGGGGGGTGCGCGCCCATGATGTCCGATGGGTGTTGGTACTTTTCCCTTATA
195 GATCG-GGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17293808 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGATATTTCA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
17293873 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17293938 ATCTTGTACACTTCGATTTTTTAGCTGAATTTGTTTGTGCATGCCAAAAAAAATACAAGGATCAC
389 ATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
17294003 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTAAACCACAAAATG
453 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
* * *
17294068 TTTCAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGG
518 TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
17294133 GACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
583 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * **
17294198 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTAATCGACGTAGTGAC
648 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT-GCCGACGTAGTGAC
* * *
17294263 CGCCCGTCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGAT
712 CGCCCG-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
17294328 CAGACCAAACCTAGGGTTGCAGCAACAGGATTGGTAGCACGCATAGGGGGACCCGATCGATCCCC
776 CAGACCAGACCGAGGGTTGCAGCAACAGGATTGGCAGCACGCAAAGGGGGACCCG-CCGATCCCC
* * * *
17294393 GGCTTGTGCATCCCGCCCCTTTGGCCAGCTAAGCGCCCGCACGCTCGTTTCATGAG
840 GGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCAGCACGCTCGTTTCATG-G
*
17294449 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
17294514 AGATC-GGACCAATGGTTGTGACCGTAAATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTATC
66 AGATCTGGACCAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
17294578 TTTGTTGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGA-
130 TTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAC
*
17294642 GATCGAGGGGGCCAGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATA
195 GATCG-GGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
17294706 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
17294771 CAGGTTTGCT-CCTGGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
324 CAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
*
17294835 AATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATA-AATGGATC
388 AATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAA-GGATC
* * *
17294899 ACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
451 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAA
* * * *
17294964 GGTTTGGAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTA
516 AGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
17295029 AGGGATCATTGTATGAATTTA-AGAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAGGT
580 AGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * * *
17295093 GCCTAAACCCACCTACCACCCTATC-ACTCCACAGCTTGCGCATCCCATCTCTCTGGCTGGCGTA
644 GCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTACGCATCCCGTCTCTCT-GCCGACGTA
17295157 GTG-CTCGCCCGCC
707 GTGAC-CGCCCGCC
17295170 CGCCCGTATT
Statistics
Matches: 2156, Mismatches: 264, Indels: 145
0.84 0.10 0.06
Matches are distributed among these distances:
865 68 0.03
866 3 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
875 2 0.00
876 348 0.16
877 34 0.02
878 272 0.13
879 2 0.00
880 15 0.01
881 1 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 1 0.00
889 1 0.00
890 1 0.00
891 25 0.01
894 2 0.00
895 1 0.00
897 4 0.00
898 254 0.12
899 530 0.25
900 6 0.00
901 5 0.00
902 398 0.18
903 171 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (893 bp):
TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
AGATCTGGACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGACG
ATCGGGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGCCGACGTAGTGACCGCC
CGCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCAGCAACAGGATTGGCAGCACGCAAAGGGGGACCCGCCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGCTGAGCGCCAGCACGCTCGTTTCATGG
Found at i:17295990 original size:26 final size:26
Alignment explanation
Indices: 17295960--17296010 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17295950 TGACTTAGGT
*
17295960 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGCCTAAGC
17295986 ATACGAAGTTCATTCCCAGCCTAAG
1 ATACGAAGTTCATTCCCAGCCTAAG
17296011 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGCCTAAGC
Found at i:17296886 original size:26 final size:26
Alignment explanation
Indices: 17296856--17296908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17296846 GTTGACTTAG
*
17296856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17296882 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17296908 G
1 G
17296909 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17297105 original size:898 final size:895
Alignment explanation
Indices: 17295177--17297516 Score: 3337
Period size: 898 Copynumber: 2.6 Consensus size: 895
17295167 GCCCGCCCGT
* * * * *
17295177 ATTTTTCTTCATCG-GGTCACCATCACCGGACCATCG-CTGGAGAACCTGACCCG-TGGCATTGG
1 ATTTATCTTCGTCGAGG-CACCATCGCCGGAGCATCGTC-GGAGAACCTGA-CCGACGGCATTGG
* * * *
17295239 GGTTCCGACGGTCGAGGTGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGG
63 GGTTCCGACGATCG-GGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
17295304 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
127 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
17295369 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
192 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
17295434 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACA
257 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACA
* *
17295499 AGGATCACGTTTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACC
322 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * *
17295564 ATAAAATGTTTCAAAAATCATGAAAAATAGACAACGAGTCGTCTTGCCATGAAACTTGACGTGAA
387 A-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
17295629 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
451 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * *
17295694 GATGTGCCTAAACCCACCTACCACCCTATCGTTTCACGGCTTAC-CATCCCGTCTCTCTGGCCGG
516 GATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
17295758 CATAGTGCCCGCCCAT-C-CT--CTCATTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCA
580 CATAGTGACCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * * *
17295819 GTCTAAGATCAGATCAGACCGAAGGTTCCGGTAGCAGGCTCGGTAGCATGCAGAGGGGGACTCGG
645 GTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGA
* * * **** *
17295884 TCGATCCCCGACTTGCGCATCTTGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
710 CCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * *
17295949 TTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGCCTAAGATC
775 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATC
* * ** * ** * *
17296014 GGACCGGACAGAGGGTTACGGTAACACATGCTGGGCTCAAGCATGTGCTGGTGCCGC
839 AGACCGGACCGAGGGTTGTGATCGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
* * * * * * * *
17296071 ATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGGATTCGGGT
1 ATTTATCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* * * *
17296136 TTCGACGATCGGGGGGGCGAGGGGGTCTGCA-TACATGATGT-CTGATGGGTGCTGGTACTTGGC
66 TCCGACGATCGGGGGGCCG-GGGGGTGTG-AGCACATGATGTGC-GATGGGTGCTGGTACTTGGC
*
17296199 CCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
128 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
17296264 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
193 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
17296329 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAA
258 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAA
* *
17296394 -GATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCA
323 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
* * *
17296458 TAAAATGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCTATGAAACTTCACGTGAAG
388 -AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17296523 GCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGTAGAAATATGAAG
452 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
*
17296588 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGC
517 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
17296653 ATAATGACCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAT
581 ATAGTGACCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * *
17296718 TCTAAGATCAGACCAAACTGAGGGTTGCAGCAATAGGATCGGTAGCACGCAGAGGGGGACCCGAT
646 TCTAAGATCAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGAC
* * * *
17296783 CGATCCCCGGTTTGTGCATCCCACCCCTCTGGCCAGCTAAGCGCCTGCACGCTCGTTTCATGAGT
711 CGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGT
*
17296848 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
776 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCA
* * * *
17296913 GATCAGACCGAGGGTTGTGATCGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCAC
840 GACCGGACCGAGGGTTGTGATCGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
* *
17296969 ATTTATCTTTGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
1 ATTTATCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* *
17297034 TCCGGA-GATTGAGGGGGCCGGGGTGGTGTGAGAACATGATGTGCGATGGGTGCTGGTACTT-GC
66 TCC-GACGATCG-GGGGGCCGGGG-GGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
17297097 CTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
128 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
17297162 GATTTTACAGGTTTGCT-CCTGGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
193 GATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * ** *
17297226 TTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAA-TTGTTTTGTTTATTCCAACAAAAATA-
257 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTG-TTTGTGCATGCCAACAAAAATAC
*
17297289 AATGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
321 AA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * ** * *
17297354 TCACAAAAAGTTTGGAAAATTGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTG
385 CCA-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
17297419 AAGGCTTAAGGGACCACTGTATGAATTTA-AGAGCCATAAAAATGGCATTGGCACGTAGAAATAT
449 AAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
17297483 GAAGAGGTGTCTAAACCCACCTACCACCCTATCG
513 GAAGATGTGCCTAAACCCACCTACCACCCTATCG
17297517 CTCGTTTCAT
Statistics
Matches: 1302, Mismatches: 122, Indels: 39
0.89 0.08 0.03
Matches are distributed among these distances:
893 231 0.18
894 320 0.25
895 4 0.00
896 2 0.00
897 7 0.01
898 492 0.38
899 245 0.19
900 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (895 bp):
ATTTATCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
TCCGACGATCGGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAA
AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
GACCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATC
CCCGGCTTGTGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACCGAGGGTTGTGATCGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
Found at i:17298621 original size:26 final size:26
Alignment explanation
Indices: 17298592--17298644 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17298582 GTTGACTTAT
17298592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17298618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17298644 G
1 G
17298645 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17301271 original size:26 final size:26
Alignment explanation
Indices: 17301235--17301287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17301225 GTTGACTTAG
* *
17301235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
17301261 GCATACAGAGTTCACTCCCAGTTTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
17301287 G
1 G
17301288 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17308463 original size:26 final size:26
Alignment explanation
Indices: 17308433--17308485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17308423 GTTGACCTAG
*
17308433 GCATACGGAGTTC-ATTCCCAGTCTAA
1 GCATACAGAGTTCAATT-CCAGTCTAA
17308459 GCATACAGAGTTCAATTCCAGTCTAA
1 GCATACAGAGTTCAATTCCAGTCTAA
17308485 G
1 G
17308486 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATTCCAGTCTAA
Found at i:17310169 original size:26 final size:26
Alignment explanation
Indices: 17310133--17310184 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17310123 TTGACTTAGT
*
17310133 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGCCTAAG
17310159 CATACGGAGTTCATTCCCAGCCTAAG
1 CATACGGAGTTCATTCCCAGCCTAAG
17310185 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGCCTAAG
Found at i:17312863 original size:26 final size:26
Alignment explanation
Indices: 17312825--17312877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17312815 GTTGACTTAG
17312825 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
17312851 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17312877 G
1 G
17312878 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17312917 original size:899 final size:898
Alignment explanation
Indices: 17309683--17313159 Score: 4952
Period size: 900 Copynumber: 3.9 Consensus size: 898
17309673 TTGTACACTT
* * *
17309683 CAAGTTT-AGGCC-AAAATGCCTTCCAAAAAAATTTTCAAAAATCACGAACCACAAAAAGTTTCA
1 CAAGTTTGGGGCCAAAAAT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* *
17309746 AAAATCGTGAAAAATAGAAAACAAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAATGGACC
65 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACC
*
17309811 ATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
129 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
17309876 CCACCTACCACCCTATCGATCCACGTCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCC
194 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
17309941 TGCCTGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA
259 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * *
17310006 CCAGACTGAGGGTTGTGGGAGCAAGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCT
324 CCCGACTGAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCT
** * * *
17310071 TGCGCATCTTGCCCCTCTGTCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGTCAT
389 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
17310136 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGA-CTGGACTGA
454 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGA
* * *
17310200 GGGTTGCGGCAGCACATTCTGGGCTTGGGTATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
518 GGGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
*
17310265 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCCG
583 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-
* * *
17310329 GGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCC
647 GGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
17310394 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCA
712 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17310459 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
777 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
*
17310524 GATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
842 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** * * * *
17310581 CAAGTTTGGGGGCCAAAACTCCTTCTGAAAAAACTTTAAAAAATCCCCAACCGCAAAAAGTTCCA
1 CAAGTTT-GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* * * *
17310646 AAAATAGAGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACC
65 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACC
* *
17310711 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGGAATATGTAGATGTGCCTAAAC
129 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
** *
17310776 CCACCTACCACCCTATCGATCCACATCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCT
194 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* *
17310841 CACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
259 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * ** * * * * * *
17310906 ACGGACCAAGGGTTGTGGCAGTAGGATTGGCGGCATGCAAAGGGGGACCCGATCGATCCCCAGCT
324 CCCGACTGAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCT
* * ** * * * *
17310971 TGTGCATCCTGCCATTCTTGCCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGAAT
389 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* ** * * ** *
17311036 ACGGAGTTCATTCCCAGTCTAGGCATACAAAGTTCATTCTCGGTCTAAGATCACATCGGACTGAG
454 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* * ** * *
17311101 GGTTGTGGCAGCACATACTGGGCTCCAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACC
519 GGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * * * *
17311166 ATCGTCGGAGCATTGCCGGAAAACCTGATCGGCGACATTGGGGTTCCGGCGATCGGGGGGGTCGG
584 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGG
** * * * *
17311231 GGGGTGTAAGCACATGATGTTCGGTGGCTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCT
649 GGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* **
17311296 CATCAAACCTCGAGACCTCACACCCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
714 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17311361 AGCCATTAAAGTG-CTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGA
779 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
17311425 GTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
844 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * * * * *
17311480 CAAGTTTGGGGTGAAGACTCTTTCCAAAAAAATTTTAAAAAATCCCGAGCCACAAAAAGTTTAAA
1 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* * *
17311545 AAATCATGAAAAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
66 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGACCA
* * *
17311610 TTG--T--A--T--AAGCCACAAAACTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACT
130 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
17311667 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGGCGTAGTGCCCGCCC
195 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * *
17311732 GCCCACCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATC
260 G----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
17311797 GGA-TCGAATCGATGATTGTGGTAGCAAGATCGGCAGCATGCAGAGTGGGACCCGACCGATCCCC
321 GAACCCGACT-GAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCC
* * *
17311861 GGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
385 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
17311926 GCTTACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTACCAGTCTAAGATCGAATCAGAC
450 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * *
17311991 CGAGGATTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
515 CGAGGGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
17312056 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG
580 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GAGGGG
* *
17312121 GCCGAGGGGTGTTCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
644 GCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * * *
17312186 TCCCCCATCAATCCTTGAGAACTCACAGCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTG
709 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
17312251 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTCTTCAAATGGTCACAAAATCGTGTACAC
774 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
17312316 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGATCATGTCTAC
839 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
17312376 CAA-TTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAA
1 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
*
17312440 AAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCA
66 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-ACCA
*
17312505 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACC
130 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
17312570 CACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
195 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * * * *
17312635 GCCCGGCCGCTCGTTTCGTCGATTGGCTTAGGCCTATGGAGTTCATTCCCAGTCTAAGATCGAAC
260 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * * * * * *
17312700 CCGACTGAGGGTTATGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGTCAATCCTCGGCTT
325 CCGACTGAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT
*
17312765 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
390 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
17312830 CGGAGTTCATTCCCAATCTAAGCATACGGTGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGG
455 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
* *
17312895 GTTGCAGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
520 GTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
17312960 TCGTTGAAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGAGGGGGCTGGG
585 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG
* *
17313025 GGG-GTATGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCC
650 GGGTGT-T-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
17313089 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTTCCAG
713 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
17313154 TAGCCA
778 TAGCCA
17313160 CAAAAAGTTT
Statistics
Matches: 2266, Mismatches: 288, Indels: 49
0.87 0.11 0.02
Matches are distributed among these distances:
890 106 0.05
892 1 0.00
893 2 0.00
894 320 0.14
895 247 0.11
896 101 0.04
897 3 0.00
898 125 0.06
899 555 0.24
900 684 0.30
901 12 0.01
903 110 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
CGACTGAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
TTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
CGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGG
GGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
Found at i:17314483 original size:26 final size:26
Alignment explanation
Indices: 17314454--17314530 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
17314444 GTTGACTTAG
17314454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17314480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17314506 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17314531 TGATCGGACC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17315856 original size:903 final size:900
Alignment explanation
Indices: 17313155--17317365 Score: 5691
Period size: 903 Copynumber: 4.7 Consensus size: 900
17313145 TTCTTCCAGT
** *
17313155 AGCCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG-AACTTCACG
1 AGCC-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* *
17313219 TGAAGGC-TAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAGTA
65 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
17313283 TGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGG
130 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
17313348 CCGGCATAGTGCCCGTCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
195 CCGGCGTAGTGCCC-CCCGCCCGTCCGCCCCCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* * * * ** * *
17313413 CATTCCCAGTCTAAGATTATACCGGATCGAGGGTTACGGTAGTGGGAATGGTAGCACGTAGAGGG
259 CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACGCAGAGGG
* ** * * *
17313478 GGACCCGATCGATCCCC-GGCTTGCGCATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTTG
324 GGACCCGATCAATCCCCAGG-TTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTTG
**
17313542 TTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTGCCAG
388 TTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAG
* * *
17313607 TCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATACTGGGCTCGACCATGTGCTGGTGCCG
453 TCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
* *
17313672 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG
518 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
*
17313737 TTACAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
583 TTACAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* **
17313802 CTTATATTGGCCCTCTGTCCCTCTTCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGA
648 CTTATATTGGCCC-CTGTCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGA
17313867 TTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
712 TTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
17313932 ACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
777 ACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
*
17313997 ATCATGTCTACCAACTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTCAAAAATCCCGA
842 ATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCCCGA
* * *
17314056 AGCCAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGT
1 AGCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
17314121 GAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCCTACAGAAATAA
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * * *
17314186 GAGGATGTACCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
17314251 CGGCGTAGTG---CCCG--C--CCGCCCGCTCGTCTCATC-AGTTGGCTTAGGCATAGGGAGTTC
196 CGGCGTAGTGCCCCCCGCCCGTCCGCCCCCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTC
* * * *
17314308 ATTCCCAATCTAAGATCAGACCGGATCCAGGGTTGCGGCAGCAGGAACGGCAGCACGTAGAGGGG
260 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACGCAGAGGGG
* * * * * * *
17314373 GTCCCAACCAATCCTCAGCTTACGCA-CCTCACCCCTCTGGCTGGCTGAGCACCCGCATGCTTGT
325 GACCCGATCAATCCCCAGGTTGCGCATCC-CACCCCTCTGGCTGGCTGAGCACCCGCACGCTTGT
*
17314437 TTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
389 TTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGT
** * *
17314502 CTAAGCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGATCGAGGGTTGCGTTAGGACATTC
454 CTAAG-AT-T-G-G---------A--C------CGGA-C----CGAGGGTTGCGGCAGCACATGC
* * * *
17314567 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGCCA
493 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCG
* * * * * * ** * * *
17314632 AAGAACCTGACCAGTGACGTTGGGGTTTCGGCGATCGGGGGGCCCGGGGGGTGTGCGCATATGAT
558 GAGAACCTGACCGGCGGCATTGGGGTTACAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGAT
* * *
17314697 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTAG---C---CCCTCACCAAACCTCGAGAACTC
623 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTGTCCCTCATCAAACCTCAAGAACTC
* * *
17314756 ACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
688 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAA
*
17314821 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
752 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTT
* * * *
17314886 TGTGCATTCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAA
817 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAA
** **
17314951 AAATTTGAAAAAATCTTGA
882 AAATTTTCAAAAATCCCGA
* * *
17314970 A-CCGCAAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACT
1 AGCC-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* *
17315034 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGAATGCAGAAATA
65 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
17315099 TGAAGATGTGCATAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGG
130 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
17315164 CCGACGTAGTGCCCCCCCGCCCG-CCAGCCCCCTTGTTTCATCGATTGGATTAGGCATACGGACT
195 CCGGCGTAGTG-CCCCCCGCCCGTCC-GCCCCCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
* * * * * * * * * *
17315228 TCATTCCTAGTCTAAGGTCAGATCAGACCGAGGGTTACGGCAACAGG-ATCAGCAGTACACAGAG
258 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAAT-GGCAGCACGCAGAG
* * * *
17315292 GGGGACCCGATCAATCCCCAGGTTGCGCATCCCACCCCTCTGGTTGGCTAAGCACCCGCACACTC
322 GGGGACCCGATCAATCCCCAGGTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTT
* * *
17315357 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTGCCA
387 GTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCA
* * * *
17315422 GTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTG-T
452 GTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * *
17315486 GACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAGCGGCGGCATTGG
517 G-CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* * * * *
17315551 GGTTCCAACGATCGGGGGGGTCAGGGGGTGTGTGCACATGATGTACGATGGGTGCTAGTACTTGG
581 GGTTACAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
17315616 CCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
646 CCCTTATATTGGCCC-CTGTCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTG
*
17315681 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATG
709 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
17315746 GTCACAAAATCTTGTACATATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACA
774 GTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
17315811 AGGATCACGTCTACCAACTTTCGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCGA
839 AGGATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCCCGA
* * *
17315873 A-CCCAAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACG
1 AGCCC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* * * *
17315937 TGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTTGCATGCAAAAATA
65 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
17316002 TGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTTCGCATCCTGTCTCTCTGG
130 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * ** * *
17316067 CAGGCATAGTGCCCGCCCGCCCGTCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGACTT
195 CCGGCGTAGTGCCC-CCCGCCCGTCCGCCCCCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* * * * * *
17316132 CATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGTAGGAATGGAAGCATGCAGAGTG
259 CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACGCAGAGGG
* * *
17316197 GGACCCGATCGATCCCC-GGCTTGCGCATCCCACCCCTCTGGCTGGTTGAGCACCCGCACGCTCG
324 GGACCCGATCAATCCCCAGG-TTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTTG
* *
17316261 TTTCGTGTGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTGCCAG
388 TTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAG
* * * * *
17316326 TCTAAGATTGGACTGGATCGAGGGTTGCGGCAACACATGCTGGGCTCGACCATGTGCTGGTGCTG
453 TCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
* *
17316391 CATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACTGACGGCATTGGGG
518 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
*
17316455 TTACAACGGTCGGGGGGGCCGGGGGAGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
583 TTACAACGATCGGGGGGGCCGGGGG-GTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
17316520 CCTTATATTGGCCCCTTGTCCCTCTTCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAG
647 CCTTATATTGGCCCC-TGTCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAG
*
17316585 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACTCTTTTTTCAAATGGT
711 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
17316650 CACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
776 CACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
*
17316715 GATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCTCGA
841 GATCATGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCCCGA
* *
17316775 AGCCAAAAAAGTTTGAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
1 AGCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
17316840 GAAGGCTTAAGGGACCATTTTTTGAATTTACAAGCCATAAAAATGGCATTGGCCTACAGAAATAA
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * *
17316905 GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
17316970 CGGCGTAGTG---CCCGCCCGTCCG----CTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCA
196 CGGCGTAGTGCCCCCCGCCCGTCCGCCCCCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* *
17317028 TTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACACAGA-GGGG
261 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACGCAGAGGGGG
* * * * * * * **
17317092 TCTCAACCAATCCTCAGCTTACGCA-CCTTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTTGTT
326 ACCCGATCAATCCCCAGGTTGCGCATCC-CACCCCTCTGGCTGGCTGAGCACCCGCACGCTTGTT
* * *
17317156 TCGTGTGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCCAGTC
390 TCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTC
* * * * ** * *
17317221 TATGATCGGACCGGATCGAGGGTTGTGTTAGGACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
455 TAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
* * * * * * *
17317286 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCAGCGACGTTGGGGTT
520 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
17317351 TCAGCGATCGGGGGG
585 ACAACGATCGGGGGG
17317366 CCAATATAAG
Statistics
Matches: 2894, Mismatches: 352, Indels: 135
0.86 0.10 0.04
Matches are distributed among these distances:
892 2 0.00
893 178 0.06
894 348 0.12
895 4 0.00
896 156 0.05
897 1 0.00
898 16 0.01
900 46 0.02
901 24 0.01
902 575 0.20
903 751 0.26
904 6 0.00
907 2 0.00
909 2 0.00
913 25 0.01
914 377 0.13
915 4 0.00
916 2 0.00
918 5 0.00
919 1 0.00
920 164 0.06
921 5 0.00
922 197 0.07
923 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AGCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCCCCGCCCGTCCGCCCCCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAATGGCAGCACGCAGAGGGGG
ACCCGATCAATCCCCAGGTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTTGTTT
CGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCT
AAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTA
CAACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCTGTCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
TGTCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATCCCGA
Found at i:17316318 original size:26 final size:26
Alignment explanation
Indices: 17316280--17316331 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17316270 TTGACTTAGT
*
17316280 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGACTTCATTCCCAGTCTAAG
*
17316306 CATACGGACTTCATTGCCAGTCTAAG
1 CATACGGACTTCATTCCCAGTCTAAG
17316332 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGACTTCATTCCCAGTCTAAG
Found at i:17317208 original size:26 final size:26
Alignment explanation
Indices: 17317172--17317222 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17317162 GTTGACTTAG
*
17317172 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17317198 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17317223 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17318034 original size:26 final size:26
Alignment explanation
Indices: 17317982--17318034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17317972 TTTGACTTAG
**
17317982 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17318008 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17318034 G
1 G
17318035 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:17318898 original size:26 final size:26
Alignment explanation
Indices: 17318869--17318918 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17318859 GTTGATTCGA
17318869 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
* *
17318895 CATACGGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCCCAATCTA
17318919 CGATCGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:17319243 original size:886 final size:888
Alignment explanation
Indices: 17317377--17323192 Score: 7511
Period size: 886 Copynumber: 6.5 Consensus size: 888
17317367 CAATATAAGG
* *
17317377 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17317442 TCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
17317507 AAATTCAAGGATCATGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** * * *
17317572 CCGAACCCAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTC
196 CTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
17317637 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGACATTGGCATGTAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
17317702 ATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
326 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
17317767 TGGCTGGCGTAGTGCCCGCCCGCCCACCCTTTCGCTCATTTCATCGGTTTGCTTAGGCATTCGGA
391 TGGCCGGCGTAGTGCCCGCCCGCCC-GCC---CGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * ** ** * *
17317832 GTTCATCCCCAGTCTAAGACCTGACC-GAACTGAGGGTTGTGGTAGCAAGATCGACAGCACGTAG
452 GTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * * * **
17317896 AAGGGGACCCGGTCGATCCTCGGCTTGCGTATCCCGCCCATCTGGCCGACTGAGCACCCGCACAC
516 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGT
* * *
17317961 TCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCC
581 TCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
17318026 CAGACTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
646 CAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
17318091 CCGCATTTTTCTTCGTC-GGGCACCATCATCGGAGAACCTGACCGACGACATT-GGGTTCCGACG
711 CCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* *
17318154 ATCGGGGGCACCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
776 ATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
17318219 TGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCGCTTAAAAA
840 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
17318268 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * **
17318333 TCAAACGATCATAAAATCTTGTACACTACGAGTATTTAGCTGAATTTTTTTGTGCATGCCAGCAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
17318398 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACC-TCTGACAAAATTTTAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAAT
* * * * *
17318462 CCTGTACAGCAAAATGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
195 CCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
17318527 CACGTAAAGGCTTCAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
17318592 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
17318657 CTAGCTGGCATAGTGCTCGCCCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTT
390 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * ** * * **
17318722 CATTTCCAATCTAAGATCCGATCAGATTGAGGGTTAC-AGTAGCAGGATCGACTGCATACAGAGG
455 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGCAGGATCGACAGCACGCAGAGG
* ** *
17318786 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAAACTGAGCACCCGCACGTTCG
519 GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCG
* * * * *
17318851 TTTCATGGGTTGA-TTCGACATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG
584 TTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * **
17318915 TCTACGATCGGA-CAGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTT
649 TCTAAGATCGGACCA-GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * ** *
17318979 GTAATTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGAT
713 GCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
* *
17319044 CGGCGGGGTC-GGGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
778 CGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
17319107 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGA
842 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
17319154 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * *
17319219 TCAAATGGACACAAAATCTTGTACACATT-GAATTTTTAGCTGAATTGTTTTGTGAAAGCCAACA
66 TCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
*
17319283 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * *
17319348 CTTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTGTTGCCATGAAACTT
195 CCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
** * * *
17319413 CACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
17319478 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTTTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
17319543 CTGGTCGACATAGTGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
390 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
** * * * *
17319608 CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCTG-CAGCAAGATCGACAGCACACAGAGG
455 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GACAGCAGGATCGACAGCACGCAGAGG
* * * * *
17319672 GGGA-CCGGCCGATCCCCGGCTAGCACATCCCGCCCCTCTGGCCGGCTGATCGCCCGCACGCTCG
519 GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCG
* *
17319736 TTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
584 TTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * *
17319801 TCTAAGATCGGACTGGACCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
649 TCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
17319866 TATTTTTCTTCGCCGGGGCACCATCGCCGGAGAACCTGACCAACGGCATTGGGGTTTCGGTGATC
714 CATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* *
17319931 GGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGG
779 GGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
17319996 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
843 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17320042 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACATTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17320107 TCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * * * *
17320172 AAATAAAAGGATCATGTCTACCAGGTTTAGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * * * *
17320237 CCGAACTGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTC
196 CTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * * *
17320302 ATGTGAAGGCTTAAGGGGCCATTTTATGAATTTAGAAGCCATAAAAATGGCATTGGCAGGTAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
17320367 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
326 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
17320432 TGGCCGGCGTAGT----GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTC
391 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** *
17320493 ATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTACGATAGTAGGATCGGTAGCATGCAGAGGG
456 ATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGG
* * * * * * * * *
17320557 GGACCCGGTCGTTCCCCGGCTTCCGCATCCCACCCCTCAGGCCGGCTAAGCGCTCGCACGCTCGT
520 GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCGT
*
17320622 TT-C---G-TG-----GG--T--TGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGT
585 TTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
17320661 CTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGTCTCGAGCATGTGCTGGTGCCGT
650 CTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
** * *
17320726 ATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCGAAGAACCTGACCGATGGCATTGGGGT
715 ATTTTTCTTCGTCGGGG---CA----C----CATCACCGGAGAACCTGACCGACGGCATTGGGGT
* * * * *
17320791 TCCGGCGATCGGGGGCCCCGAGGGGGGGTTCTGCGCACGTGATGTGTGATGGGTGATGGTACTTG
769 TCCGGCGATCGGGGG-GCC--GGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* **
17320856 GCCCTTATATTGGCCCCCTATCCCTCATCACACCTCGAGAACAAACACCCCCTTAAAGA
830 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17320915 GAATTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17320980 TCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
** * **
17321045 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGGTGCTTTTGAAAAAATTTTAAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
17321110 -CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
195 CCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
17321174 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
17321239 AAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
17321304 TCTGGCCGGTGTTGTGCCCGCCCGCCCGCCCGCCGCTCGTTCCATCGGTTGGCTTAGGCATATGG
389 TCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * *
17321369 AGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATTGACAGTAGGCAG
451 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * *
17321434 AGAGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACAC
516 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC-G
*
17321498 TT-GTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCTTTC
580 TTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *** *
17321561 CCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACCCCCTGGGCTCGGGCATGTGTTGGT
645 CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
17321626 GCCGCATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCTGGAGAACCTGACAGGCAGCATT
710 GCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA-C-C-GGAGAACCTGACCGACGGCATT
* * *
17321691 GGGGTTCCGGTGATCAGGGGGGCCGGGGGGGGGTGTGCGCCCATGATGTACGATGGGTGCTGGTA
764 GGGGTTCCGGCGATC-GGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
17321756 -TTGGGCCCTT-TATTGG--CCCTAT-CCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGA
826 CTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
17321815 GCATTTGAGATTTTACAGGTTTACTGCCAGTGGCCATTAAAGTGTCTGGAATGGGGACATTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17321880 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAAGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
17321945 AAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAAT
* *
17322010 CCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG-AAATGAGTCGTCTTGCCATGAAACTT
195 CCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
17322074 CACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
17322139 AATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
17322204 CTGGCCGGTGTTGTGCCCGCCCGCCCGCCCGCCGCTCGTTCCGTTGGTTGGCTTAGGCATATGGA
390 CTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * *
17322269 GTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATTGACAGTAGGCAGA
452 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGA
* *
17322334 GAGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCATACAC-
517 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC--GCACG
*
17322397 TT-GTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCTTTC
580 TTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *** *
17322460 CCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACCCCCTGGGCTCGGGCATGTGTTGGT
645 CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
17322525 GCCGCATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCTGGAGAACCTGACAGGCAGCATT
710 GCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA-C-C-GGAGAACCTGACCGACGGCATT
* * * *
17322590 GGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCCCATGATGTACGATGGGTGCTGGTA-TT
764 GGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
17322654 GGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGA
829 -GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17322715 GCATTTAAGATTTTACAGGTTTACTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
17322780 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGTATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* *
17322845 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTCAAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
17322910 CCTAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGA-T
195 CCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA-ACT
* * * *
17322974 TCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCAATAAAAATGGCATTGGCACGAAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
17323039 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGTATCCCGTCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
17323104 TCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGCTCGTTTCATCGGTTGGCTTCGGCA
389 TCTGGCCGGCGTAGT----GCCCGCCCGCCCG-C--C-CGCTCGTTTCATCGGTTGGCTTAGGCA
**
17323169 TACGGAGTTCATTCGTAGTCTAAG
446 TACGGAGTTCATTCCCAGTCTAAG
17323193 CATACGGAGC
Statistics
Matches: 4371, Mismatches: 452, Indels: 189
0.87 0.09 0.04
Matches are distributed among these distances:
859 95 0.02
862 2 0.00
864 2 0.00
866 1 0.00
867 2 0.00
868 1 0.00
870 45 0.01
871 2 0.00
872 7 0.00
873 205 0.05
874 249 0.06
875 2 0.00
878 8 0.00
880 45 0.01
881 98 0.02
882 1 0.00
883 2 0.00
884 98 0.02
885 125 0.03
886 814 0.19
887 190 0.04
888 461 0.11
889 3 0.00
890 4 0.00
891 375 0.09
892 3 0.00
894 4 0.00
896 49 0.01
897 8 0.00
898 10 0.00
899 607 0.14
900 385 0.09
901 226 0.05
902 5 0.00
903 9 0.00
904 36 0.01
905 138 0.03
906 54 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGG
GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTT
TCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
Found at i:17319786 original size:26 final size:26
Alignment explanation
Indices: 17319749--17319806 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
17319739 CGTGGGTTGA
17319749 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
17319776 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
17319802 CTAAG
1 CTAAG
17319807 ATCGGACTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:17321561 original size:25 final size:26
Alignment explanation
Indices: 17321519--17321570 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17321509 GTTGACTTAG
*
17321519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17321545 GCATAC-GAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17321570 G
1 G
17321571 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17322175 original size:899 final size:898
Alignment explanation
Indices: 17320639--17323192 Score: 3638
Period size: 899 Copynumber: 2.8 Consensus size: 898
17320629 GTTGACTTAG
* * *
17320639 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * * * *
17320704 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TGGAGCATC-CTGGAGA
* *** * * *
17320769 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGCCCCGAGGGGGGGTTCTGCGCACGTGAT
129 ACCTGACAGGCAGCATTGGGGTTCCGGCGATCGGGGG-GCC--GGGGGGG-TGTGCGCACATGAT
* * * *
17320834 GTGTGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTCGAGAACA
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
17320899 AACACCCCCTTAAAGAGAATTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17320964 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * **
17321029 TTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGGTGCTTTTGA
384 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
17321094 AAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
448 AAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
17321158 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17321223 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGC
577 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
17321288 TTGCGCATCCCGTCTCTCTGGCCGGTGTTGTGCCCGCCCGCCCGCCCGCCGCTCGTTCCATCGGT
642 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CCGCTCGTTTCATCGGT
* * *
17321353 TGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAG
* * *
17321418 GATTGACAGTAGGCAGAGAGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
771 GATCGACAGCACGCAGAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
17321482 CTGAGCGCCCACACACTTGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ***
17321545 GCATAC-GAGTTCTTTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACCCCCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
17321609 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATC-CTGGAGA
* *
17321674 ACCTGACAGGCAGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGGGGTGTGCGCCCATGATG
129 ACCTGACAGGCAGCATTGGGGTTCCGGCGATC-GGGGGGCC--GGGGGGGTGTGCGCACATGATG
* * *
17321739 TACGATGGGTGCTGGTA-TTGGGCCCTT-TATTGG-CCCTAT-CCTTATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
17321800 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTGGCCATTAAAGTGTCTGGA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17321865 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
17321930 TTTGCAAGCCAAAAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAA
385 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
17321995 AAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG-AAATGAGTCGT
450 AAATTTT-AAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
17322059 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17322124 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
17322189 GCGCATCCCGTCTCTCTGGCCGGTGTTGTGCCCGCCCGCCCGCCCGCCGCTCGTTCCGTTGGTTG
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CCGCTCGTTTCATCGGTTG
* * *
17322254 GCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
* * *
17322319 TTGACAGTAGGCAGAGAGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
773 TCGACAGCACGCAGAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
** * *
17322383 GAGCGCCCATACACTTGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ***
17322444 GCATAC-GAGTTCTTTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACCCCCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
17322508 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATC-CTGGAGA
* * * *
17322573 ACCTGACAGGCAGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTGTGCGCCCATGATGTAC
129 ACCTGACAGGCAGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
17322638 GATGGGTGCTGGTA-TTGGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCAC
194 GATGGGTGCTGGTACTT-GGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17322702 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGCCAGTGGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17322767 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17322832 TGTATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAA
387 TGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
17322897 AATTTCAAAAAATCCTAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
17322962 TGCCATGAAGA-TTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCAATAAAAATGG
516 TGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17323026 CATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17323091 CGTATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGCTCGTTTCATCG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-CC--C-CGCTCGTTTCATCG
* **
17323156 GTTGGCTTCGGCATACGGAGTTCATTCGTAGTCTAAG
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17323193 CATACGGAGC
Statistics
Matches: 1532, Mismatches: 99, Indels: 34
0.92 0.06 0.02
Matches are distributed among these distances:
896 49 0.03
897 6 0.00
898 7 0.00
899 612 0.40
900 385 0.25
901 233 0.15
902 1 0.00
903 9 0.01
904 35 0.02
905 141 0.09
906 54 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCCTGGAGAAC
CTGACAGGCAGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGC
ACGCAGAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17322460 original size:25 final size:26
Alignment explanation
Indices: 17322418--17322469 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17322408 GTTGACTTAG
*
17322418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17322444 GCATAC-GAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17322469 G
1 G
17322470 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17323196 original size:26 final size:26
Alignment explanation
Indices: 17323166--17323218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17323156 GTTGGCTTCG
* **
17323166 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
17323192 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
17323218 G
1 G
17323219 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:17324978 original size:26 final size:26
Alignment explanation
Indices: 17324941--17324993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324931 GTTGACTTAG
*
17324941 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
*
17324967 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
17324993 G
1 G
17324994 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:17328713 original size:26 final size:26
Alignment explanation
Indices: 17328677--17328729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17328667 CCGGTCCGAT
* *
17328677 CTTAGGCTGGGAGTGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
17328703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
17328729 C
1 C
17328730 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:17329603 original size:26 final size:26
Alignment explanation
Indices: 17329574--17329626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17329564 CCGGTCTGAT
*
17329574 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17329600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17329626 C
1 C
17329627 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17330498 original size:26 final size:26
Alignment explanation
Indices: 17330462--17330517 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
17330452 TCGGTCCGAT
17330462 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTGGGGAATGAAC-TCGTATG
17330488 CTTAGACTGGGGAATGAACTCGTATG
1 CTTAGACTGGGGAATGAACTCGTATG
17330514 CTTA
1 CTTA
17330518 AGTCAACCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGAATGAACTCGTATG
Found at i:17331398 original size:26 final size:26
Alignment explanation
Indices: 17331369--17331421 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17331359 CCGATTCGAT
17331369 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17331395 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17331421 C
1 C
17331422 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17332310 original size:26 final size:26
Alignment explanation
Indices: 17332274--17332326 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17332264 CTGGTCCGAT
17332274 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
17332300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
17332326 C
1 C
17332327 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:17335835 original size:26 final size:26
Alignment explanation
Indices: 17335806--17335858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17335796 CCGGTGTGAT
17335806 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17335832 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17335858 C
1 C
17335859 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17336738 original size:26 final size:26
Alignment explanation
Indices: 17336700--17336751 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17336690 TCGGTCTGAT
*
17336700 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17336726 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17336752 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17337440 original size:904 final size:902
Alignment explanation
Indices: 17327709--17341423 Score: 16872
Period size: 904 Copynumber: 15.4 Consensus size: 902
17327699 ATTGCTCCGG
* * * * *
17327709 CGAAGAAAAATGCCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCG-TACCCTCTGTCCG
1 CGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
** * * * *
17327773 GTCCGATCCCAGACTGTGAATGAACTCCATATGCTTACACTGGGAATGAACTCCATATGCCTAAG
65 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** *
17327838 TCAACCCATGAAATGAACGTGCGGGCGCTCAGCTGGCCAGAGGGGTAGGCTGCGCAAG-CTGGGG
130 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGG
** * * * * * ** * *
17327902 ATCGATCGGATCCCCTTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTTAGTTCAGTCTGATCT
194 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* ** * *
17327967 TAG-CTAGGAATGAAGGCTGTATGCCTAAGCCAACCGACGAAACGA---GCGGACGGGCGAGCGG
259 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACGAGGGGCGGGCGGGCGGGCGG
* * * * *
17328028 GCATTACGTCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTA
323 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
***
17328093 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
388 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * **
17328158 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAA
453 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * ** * *
17328223 CTATTTGCTATTCGGGATTTTTTAAAACATTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGA
518 CTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
17328287 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAGTCTACAAGA
582 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
17328352 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
647 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
17328417 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
712 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
17328482 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
777 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* * * * *
17328546 CGTCGGAACCCCAATGCCGCCGGTCAGCTTCTCTGACGATGCTCCGGTGATGGTG-CCCAA
842 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* ** *
17328606 GGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
17328671 TCCGATCTTAGGCTGGGAGTGAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17328736 CAACCCA-TAAACGAGCGTACGGCCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGTCGAGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* ** *** * * * * **
17328800 CGGTCGCATCCCCCTCAAAGTGCTACCGATCCTACTGCCGTAACCCTCGGTCCAGTCCCATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * ** * *
17328865 GACTAGGAATGAACTCCGTATGCCTAAGATAAACCGACGAAACGA---GTGGGCAGGCGGGCGGG
261 GACTGGGAATGAACTCTGTATGCCTAAG-CCAA-CGACGAAACGAGGGGCGGGCGGGCGGGCGGG
* *
17328927 CACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAG
324 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * * * ** *
17328992 GCATATCTTCATATTTCTATGTGCCATTCCCATTTTTATGGCATGTAAATTCATACTCTAGTCCC
389 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ** *
17329057 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAGGATTTTCAAAAA
454 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
17329122 TTTTTGCGGTTCGAGATTTTTTAAAATTTGTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
519 TTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * ** * *
17329186 ATGATTCTTGTATTTTTGTTTCCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAA-AT
583 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
17329250 TTTGTGACCATTTGAAAAAAGTGTCCCTAATTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
648 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
17329315 TACAATCTCAAATGCTCTTTGA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGCGGGCCAA
713 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
17329379 TATAA-GGCCAAGTACCAGCACCCATCTCACATCATGTGTGCACACCCCTCGGGCCCCCCTGATC
778 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* ** * * ** * * * *
17329443 GTCGAAAAGCCAATGCCGCTGGTCAAGTTCTCCGATGATGATCCGACGTTGGTGCCCTGA
843 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* *
17329503 CGAAGAAAAATGTGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
17329568 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
17329633 CAACCAACGAAACGAGCGTGC-GG-GCTCAGTCGGCC-GAGGGGCGGGATG-GTGAGCCAGGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * *
17329694 CGG-CGGGTCCCCCTCTGCGTGGCTGCCGATCCTGCTGCCGTAACCCTTGATCTGGATC-GATCT
196 CGGCCGGGTCCCCCTCTGCGT-GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG-TCTGATCT
* * *
17329757 TAGACT-GGAATGAACTCCGTGTGCCTAAGCCAACGACGAAAC-A---AC--G-GGGCGGGCGGG
259 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACGACGAAACGAGGGGCGGGCGGGCGGGCGGG
17329814 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
324 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17329879 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCC
389 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17329944 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
454 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
17330009 TTTTTACGGTTCGAGATTTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
519 TTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
17330074 GTGATCCTTCTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTTGAAGTGTACAATAT
583 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
17330139 TTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTATTGGCAGCAAACCTG
648 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
17330204 CAAAATCTCAAACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAA
713 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
17330267 TATAAGGTCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCTCCCCGGCCCCCCCGATC
778 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* *
17330332 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTACGACGATGGTGCCCCGA
843 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
** * * *
17330392 TTAA-AAGAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTTGGT-CG
1 CGAAGAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
17330455 GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGAATGAACT-CGTATGCTTAA
65 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAA
* * * *
17330519 GTCAA-CCACGAAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGAGATGCGCAAGTTGGG
129 GTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGG
* * * * * * * *
17330583 GATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACGGCAACCCTCGGTCTGATCCGATC
193 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* * * **
17330648 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAACGGGTGGGCGGATGGGC
258 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACG-A---G-GGGCGGGCGGGC
* * ** * *
17330713 GGGCGGGCACTACACTGGGTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTG
317 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17330778 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAA
382 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17330843 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTTCATGATTT
447 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
17330908 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGTCCCAAACTTG
512 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17330973 GTAGTCGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTA
577 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17331038 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGTTACTGGCAGCA
642 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
17331103 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGA
707 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
17331168 GGCCAATATAAGGGCCAACTACCAGCACCCATTGCACATCATGTGCGCA-AACCCCCCGGCCCCC
772 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
** * * * * * *
17331232 CCGATCACCGGAACCTCAATGCTGTCGATCAGGTTCTCTGGCGATGCTCCAGCGATGGTGCCCCG
837 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
*
17331297 G
902 A
* ** * ** *
17331298 TGAAGAAAAATATGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGCCGTTACCCTCGGTCCGA
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
17331363 TTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17331428 CAACCAACGAAACGAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
131 CAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* * * * ** * * * * **
17331493 TTGACCGGGTCCCCCTCTGCAG-GCTGTCGCAAACC--CTCGGGGCTA--TTTGGTTCAGGGGGG
195 TCGGCCGGGTCCCCCTCTGC-GTGCTG-C-CGATCCTGCT-GCCGCAACCCTCGG-TC--CGGTC
* * * * *
17331553 GGATCTTTAGACTGGGAATGAACACCT-TATGCCTAAGCCAACTGACGAAATGAGGGGAGGTGTG
253 TGATC-TTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAAC-GACGAAACGAGGGGCGG-GCG
* * *
17331617 GAC-GGCGGGCACAAC-CCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGGT--ATAGGGTGGTA-
314 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ***
17331676 GTGGG-TTAGGCACATCTTCATATTTTTTGTTGGCCAATGCCATTTTTATTGGCTTGCTAAATTC
379 GTGGGTTTAGGCACATCTTCATATTTCTACAT-GCCAATGCCATTTTTA-TGGCTTG-TAAATTC
* * *
17331740 ATACAATGGTCTCTTAAGCCTGTCACGTGAAGTTTCATGGTCAAGACGACTCATTTTCAATTTTT
441 ATACAATGGTCCCTTAAGCCT-TCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTT
* * *
17331805 CACGATTTTTGAAATTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
504 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
*
17331870 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAACAAAATTCAGCTAAAAACTC
569 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17331935 GAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCACATTTAAGACACTTTAATGGCTAC
634 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
17331999 TGGAAGCAAACTTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGATTTCTTGAGGTTTGATGAG
699 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * **
17332064 GGATAAGGGGCCAATATAAGGGCCAAATACCAGCACCCATCTCACATTATGTGCTTACACCCCCC
764 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* ** * * * *
17332129 CGGTCCCCCCGATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCAGCGATGCTCTGGCAATG
829 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
*
17332194 GTGCCCCGG
894 GTGCCCCGA
* * *
17332203 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
17332268 TCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * **
17332333 CAACCCACGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCAAGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
** * * * * * **
17332398 CGATCGGGTCCCCCTCTGTGTGCTACCGATCCTCCTGCCGTAACCCTCGGTCTGGTCCAATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * *
17332463 GACTGGGAATGAACT-TCGTATACCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGTGGGCGG
261 GACTGGGAATGAACTCT-GTATGCCTAAGCCAA-CGACGAAACGAG-GGGCGGGCGGGCGGGCGG
* * * * * * *
17332527 GCACTACGTCGGGCAGACAGACAGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTG
323 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
17332592 GGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAGTGGTCC
388 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
17332657 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
453 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
*
17332722 CTTTTTACGGTTTGGGGATTTTTTAAAATCTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
518 CTTTTTACGG-TTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
17332786 ACGCGGTCCTTGTATTTTTCTTGGCATGCAC------A-T-A-CT-----C-C-AAATGTACAAG
581 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
17332835 ATTTTGTGACCATTTGAAAAACA-TGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAA
646 ATTTTGTGACCATTTGAAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
17332899 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGTGC
710 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
17332964 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACGG-CCCCTC
775 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCC
* * * *
17333028 AATCGTCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGA
839 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* *
17333092 CGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCC-G
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
17333156 ---G-TC-----C---------A------ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
17333196 CAACCCACGAAACGAGCGTACGGGCGCTTAGCCAACCAGAGGGGCGGGATGCACAAGTCGAGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * * ** **
17333261 CGGCCAGGTACCCCTCTACGTGCTACCGATCTTGCTGTCGTAACCCTCGGTCCAATCAAATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * * * *
17333326 GACTGTGAATGAACTCCGTATGCCTAAGCCAACTAAAGAAACGAGCGGGCAGGCGGGCGGGCGGG
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAAC-GACGAAACGAG-GGGCGGGCGGGCGGGCGGG
* * * *
17333391 CACTACGCCTGCCAAAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
324 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17333456 GCACATTTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
389 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17333521 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
454 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
*
17333586 TTTTTACGGTTTGGGATTTTTTAAAATCTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
519 TTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
17333650 GCGGTCCTTGTATTTTTCTTGGCATGCAC------A-T-A-CT-----C-C-AAATGTACAAGAT
583 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17333699 TTTGTGACCATTTGAAAAACA-TGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAACT
648 TTTGTGACCATTTGAAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17333763 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGTGCCA
712 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
17333828 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCTGAT
777 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
** * * * * *** * *
17333892 CACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGATTATGGTGCCTCGG
842 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* ** * *** * *
17333953 CGAAGAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCGGTTTCAACCCTCTGTTCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * **
17334018 TCTGATTTTATACTGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAG
66 TCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
17334083 TCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGCATGTGCAAGTCGGGGA
130 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* **** * * * * * * * * * **
17334148 TCGACCGGGTATGACTCTGCATGCTGTCGATCTTGCTACCGGAATCATCGATCTGGTCAAATCTT
195 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* ** * * *
17334213 AGACTGGGAATGAACTTTGTATGCCTAAGCCAATTAACGAAACGAGCGGGCAGGCGGGCAGGTGG
260 AGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACGAG-GGGCGGGCGGGCGGGCGG
* * * * * * *
17334278 GCACTACGTCGGCCTGAGAGATGGGATGCGCAAGCTGTGGATAGATAGGGTGGTTGTTGGGTTTA
323 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
17334343 GGCACATCTTCATATTTCTACTTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
388 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
17334408 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTCGAAA
453 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * * * *
17334473 GTTTTT-CTGGTTCGGGATTTTTTAAGATTTTTTCGAAAGGATTTTTGGTCCCAAGCTTGGTATA
518 CTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
17334537 TGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGA
582 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
17334602 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
647 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17334667 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCA
712 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
17334732 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACGG-CCCCTCAA
777 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGA
* * *
17334796 TCGTCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGA
841 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* *
17334858 CGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCC-G
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
17334922 ---G-TC-----C---------A------ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
17334962 CAACCCACGAAACGAGCGTACGGGCGCTTAGCCAACCAGAGGGGCGGGATGCACAAGTCGAGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * * ** **
17335027 CGGCCAGGTACCCCTCTACGTGCTACCGATCTTGCTGTCGTAACCCTCGGTCCAATCAAATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * * * *
17335092 GACTGTGAATGAACTCCGTATGCCTAAGCCAACTAAAGAAACGAGCGGGCAGGCGGGCGGGCGGG
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAAC-GACGAAACGAG-GGGCGGGCGGGCGGGCGGG
* * * *
17335157 CACTACGCCTGCCAAAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
324 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17335222 GCACATTTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
389 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17335287 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCGAAAC
454 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* ** * *
17335352 TTCTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTGGCTCCAAACTTGGTAGAC
519 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGAC
* * ***
17335416 GTGATCCTTGTATTTTTTTTGGCATGCTCAAAAAAATTCAAAAAAAAACTCGAAGTGTACAAGAT
583 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17335481 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTTCTGGCAGCAAACCTG
648 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
17335546 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAA
713 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
17335611 TATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACA-CCCCCCGACCCCTCCGATC
778 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * * *
17335675 GTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCTGACGATAGTGCCTCGA
843 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
17335735 CGAAGAAAAATACGGCACCAACACATGCGCTAGCCCATCATGTGCTGCTGCAACCATCGGTCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
** *
17335800 TGTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17335865 CAACCCATGAAACGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGCTGGATGCGCAAGCCGGGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * * *
17335930 CAGCCGGTTCCACCTCTGCGTGCTGCAGATCCTGCTACCACAACCCTCGATCCGGTCTGACCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * *
17335995 GACTGGGAATGAACTCTATATGCCGACGCCAACCGACG-AA--A---G-GGGCGGGCGGGCGGGC
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACGAGGGGCGGGCGGGCGGGCGGGC
* * * *
17336053 ATTACGCCGGCCAGAGAGACGGGATTCGCGAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGG
325 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * * *
17336118 TACATCTTCATTTTTCTACGTGCCAATGCCATTTTTAAGGCTTTTAAATTCATGCAATGGTCCCT
390 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
17336183 TAAGCCTTCCCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGA-TTTTCATAAC
455 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA-AAC
* * * *
17336247 -TTTTACAGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACG
519 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
17336311 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAATTCGAAGTGTACAAGATT
584 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
17336376 TTGTGACCATTT-AAAAAAGTATCCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACTTGT
649 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
17336440 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
714 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17336505 ATAAGGGTCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
779 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * *
17336570 -CTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGG
844 TC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * *
17336629 TGAAGAAAAAAGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
17336694 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGGCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * * * * * *
17336759 CAACGCGTGAAATGAGCGTGCGGGCACTCAGCCGGCCAGTGGGGCCGGATGCGCAAGCCAGAGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * ** ** *
17336824 CGGTCGGGTCACCCTCTACATGCTGCCGATCCTTCTGTTGCAACCCTCGGTTTGGTTTGATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
*
17336889 GACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCAGGCGGGACGGGCGGGCGG
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACGAG-GGGCGGG-CGGGCGGGCGG
* * * * *
17336954 GCACTACGTCGGCCATAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTA
323 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
17337019 GGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
388 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
17337084 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCGAAA
453 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* ** *
17337149 CTTCTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGA
518 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGA
* * ***
17337213 CGTGATCCTTGTATTTTTTTTGGCATGCTCAAAAAAATTCAAAAAAAAACTCGAAGTGTACAAGA
582 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
17337278 -TTTGTGACCATTTGAAAAAAGTGTCCCAATTTGAGACACATTAATGGCTACTGGTAGCAAACCT
647 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17337342 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCGA
712 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
17337407 AAATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCAACCCCTGGCCCCCCCG
777 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCCGGCCCCCCCG
* * ** * *
17337472 ATCTTTGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTG-CCCTA
840 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * ** *
17337534 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCATAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
17337599 TCCGATCTTAGACTGGGAATGAACTCCGTATGC-TAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17337663 CAACCCAAGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGGCGGGACGCGCAAGTCGGGAAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * *
17337728 CGACCGGGTTCACCTCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTTCGGTCTGATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
*
17337793 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGGGCGGGCGGGCGGG
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAAC-GACGAAACGAG-GGGCGGGCGGGCGGGCGGG
* ** *
17337858 CACCACGCCGAACAGAGAGACGGG-TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
324 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
17337922 GTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATTGCTTTTAAATTCACACAATGGTCCC
389 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
17337987 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
454 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* ** * *
17338052 TTTTTGCGGTTCAAGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACG
519 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
17338117 CGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
584 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17338182 TTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
649 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17338247 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
714 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17338312 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCGCCCCCCGACCCCCCCGA
779 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--C-CCCCCCGGCCCCCCCGA
* * * *
17338377 TCGTCGAAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA
841 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
17338439 CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAAACCTCGGCCCAG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
17338504 TCCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17338569 CAACCCACGAAATGAGCATAG-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGA
131 CAACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
*** * * * * * * * *
17338633 TCAAACGGGTCCCCTTCTACGTGCTTCCAATCCTGCTACTGCAACCCTCGGTTCGATCCT-ATCT
195 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGT-CTGATCT
* ** * * *
17338697 TAGATTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACAAGCGGGCGGGCGGACGGGTG
259 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACGAAACGAG-GGGC--G-GG-CGGGCG
* * * * *
17338762 GGCGGGCACTACGTCGGCTAGAGAGATGGGTTGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGG
318 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* **
17338827 GTTTAGGCACATCTTCATATTTCTGCATTTCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
383 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17338892 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTT
448 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * * * *
17338957 TGAAACTTTTTACGATTCGGGATTTTTTTAAAA-TGTTTCGAAAGGAGTTTTTGCCCCAATCCTA
513 TGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17339021 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTA
577 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17339086 CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCTAGC
642 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGC
* *
17339150 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATGGG
706 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17339215 GGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGAACACCCCCCCGGCCCC
771 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
17339280 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGACAATGGTGCCCC
836 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
17339345 GA
901 GA
* * ** *
17339347 CGAAGAATAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTTGGAA-CC-C--T-C-G
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
17339406 ---G-TC-T--A----G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
17339451 CAAACAACGAAATGAGCGTGCGGGTGCTC-GCCCTGCCAGAGGGGCGAGATGCACAAGTCGGGGA
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* * * * ** * * * * *
17339515 TCGGTCGAGTCCCCCTTTGCATATTGCCGATCCTGATGCTGCAACCCT-TGACCTGGTTTGATCT
195 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCC-GGTCTGATCT
* * * * *
17339579 AAGACTGGGAATGAGCT-TCGTATGCCTAAGCGAACCGATGAAACGA---GCGGGCGGGTGGGCG
259 TAGACTGGGAATGAACTCT-GTATGCCTAAGCCAA-CGACGAAACGAGGGGCGGGCGGGCGGGCG
* * *
17339640 GGCACTACGCCGGCCAGAGAGACGGGGATGCGCAAGCCGTGGATCGAGAGGGTGGTAAGTGAGTT
322 GGCACTACGCCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
17339705 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
386 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
17339770 CCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
451 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** **
17339835 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGTTCCCAAACTTGGTAG
516 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * *
17339900 AAGTTATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTATACAAG
581 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
17339965 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
646 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
17340030 TGTAAAATCTCAAATGCTCTTTGAA-GGGGTGT-AGTTCTCAAGGTTTGATGAGGGATAGGGGGC
711 TGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
17340093 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACA-CCCCCCGGCCCCCCCG
775 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * ** *
17340157 ATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTTGG
840 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
17340220 TGAAGAAAAATGCAGTACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCATCGATCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * **
17340285 TCTGATCTTAGACTGGGAATAAACTCCGTACACTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * * *
17340350 CAACCCACTAAACGAGCGCGCGGGCGCTCAGCCAACCAAAGGGGCGGGATGCACAAGTCAGGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * * * *
17340415 TGGCCGGGTCCCCCTTTACGAGTTGCTGATCCTGTTGCCGCAACCCTCGGTCTGGTCCGATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
**
17340480 GACTGGGAATGAACTCTGTATGCCTAAGCCAAC--C--AACGA------AACGGGCGGGCGGGCA
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAACGACGAAACGAGGGGCGGGCGGGCGGGCGGGCA
* * * *
17340535 CTATGCCGGTCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
326 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** * *
17340600 ACATCTTCATATTTCTATGTGCTAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTT
391 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
17340665 AAG----C-C-------TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATGTTTAAAACTT
456 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* **
17340718 TTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
521 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
17340783 ATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
586 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
17340848 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT-GCTAGCAAACCTGTA
651 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTA
** *
17340912 AAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATA
715 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
17340977 TAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCCCCCCCGACCCCCCCGATCG
780 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCG
* ** * *
17341042 TCGAAACCGTAACGCCGCCGGTCAGGTTCTCCGACGATGCT-C--C------G----G-
844 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * *
17341087 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACGCTCGATCCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * * *
17341152 TCCGTTCTTAGACTGGGAATGAACTTCGTTTGCTTAGACTAGGAATGAACTCCG-ATTCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17341216 CAACCCACGAAATGAGCGCGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGTCGGGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * **
17341281 TGGCTGGGT-CCCC-CT---T-C-G-CG----TGTTGCCGTAACCCTCGGTCTGGTCCAATCTTA
196 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * * * *
17341334 GACTGGGAATGAACTCCGTATGCCAAAGCCATCAGATGAAACGA---GCGGGCAGGCGGGCGGGC
261 GACTGGGAATGAACTCTGTATGCCTAAGCCAAC-GACGAAACGAGGGGCGGGCGGGCGGGCGGGC
* * *
17341396 ACTACGTCAGCC-GAAAAGACGGGATGCG
325 ACTACGCCGGCCAG-AGAGACGGGATGCG
17341424 AACCAGCTCA
Statistics
Matches: 11190, Mismatches: 1373, Indels: 545
0.85 0.10 0.04
Matches are distributed among these distances:
854 61 0.01
858 1 0.00
859 6 0.00
860 3 0.00
861 115 0.01
862 312 0.03
863 384 0.03
864 4 0.00
865 5 0.00
866 76 0.01
867 101 0.01
868 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 116 0.01
874 114 0.01
875 357 0.03
876 7 0.00
877 121 0.01
878 887 0.08
879 81 0.01
880 1 0.00
881 61 0.01
882 162 0.01
883 4 0.00
884 4 0.00
885 3 0.00
886 4 0.00
887 219 0.02
888 640 0.06
889 542 0.05
890 121 0.01
891 54 0.00
892 51 0.00
893 228 0.02
894 507 0.05
895 242 0.02
896 247 0.02
897 333 0.03
898 329 0.03
899 161 0.01
900 29 0.00
901 66 0.01
902 328 0.03
903 640 0.06
904 1042 0.09
905 892 0.08
906 648 0.06
907 139 0.01
908 214 0.02
909 8 0.00
910 42 0.00
911 463 0.04
912 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
GACTGGGAATGAACTCTGTATGCCTAAGCCAACGACGAAACGAGGGGCGGGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
Found at i:17337635 original size:25 final size:25
Alignment explanation
Indices: 17337607--17337656 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
17337597 GGTCCGATCT
17337607 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17337632 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17337657 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCCGTATGC
Found at i:17338539 original size:26 final size:26
Alignment explanation
Indices: 17338510--17338562 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17338500 CCAGTCCGAT
17338510 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
17338536 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
17338562 C
1 C
17338563 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:17340320 original size:26 final size:26
Alignment explanation
Indices: 17340291--17340340 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17340281 CCGGTCTGAT
17340291 CTTAGACTGGGAATAAACTCCGTACA
1 CTTAGACTGGGAATAAACTCCGTACA
*
17340317 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
17340341 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACA
Found at i:17341516 original size:26 final size:26
Alignment explanation
Indices: 17341480--17341532 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17341470 CTGATCTGAT
17341480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17341506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17341532 C
1 C
17341533 CTAAAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17345911 original size:26 final size:26
Alignment explanation
Indices: 17345881--17345933 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17345871 CCAAGCCGAT
*
17345881 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCATATG
**
17345907 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTACGAATGAACTCCATATG
17345933 C
1 C
17345934 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCATATG
Found at i:17347679 original size:26 final size:26
Alignment explanation
Indices: 17347650--17347702 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17347640 CTGATCCGAT
17347650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17347676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17347702 C
1 C
17347703 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17350170 original size:26 final size:26
Alignment explanation
Indices: 17350134--17350189 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17350124 CCGGTTAGAT
17350134 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17350160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17350186 CTTA
1 CTTA
17350190 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17350650 original size:902 final size:882
Alignment explanation
Indices: 17347683--17351283 Score: 4620
Period size: 902 Copynumber: 4.1 Consensus size: 882
17347673 ATGCTTAGAC
* * * * * *** *
17347683 TGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACAAGCGAGTAAGC-AGGCGGGCGGGCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGA-GCGTGCGGGCA
* * * * *
17347747 CCACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGC
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
17347812 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
17347877 AAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTT
* * * * *
17347941 TTTGCGGTTCCGA-ATTTTTGAAAATTTTTTTTG-GAGGATTTTTGGCCACAAACTTGGTAGACG
260 TTTACGGTT-CGAGATTTTTTAAAA-TTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
17348004 TGATCCTTTTATTTTTGTTGGCATGCATAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
17348068 TTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGG
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-G
* * *
17348133 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGACGTTTGATGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAA
* * * * * *
17348198 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCCCCTGATCG
517 TATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCACACACCCCCCGGCCCCCCCGATCA
* * * *
17348263 CCGGAACCCCAATGCCGTCGGTCAGGTTTTTCGGTGATGCTCTGGCGATGGTGCCTCGGCGAAGA
582 CCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTGCCT-GACGAAGA
* * * *
17348328 AATATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGTAACCC-TC-GATC--C-AGT
646 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTCGGATCTACGAGT
* *
17348388 CC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGG-A
711 CCATATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCA
* * * * *
17348451 GCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGAGGATCGGTCGGGTCCCCTTCTACATGCTG
776 -CTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTG
* * * * * *
17348516 TCGATCCTGCTACAGTAGCCCTCGGTCTGATCTGATCTTGGTC
840 CCGATCCTGCTACAGTAGCCCTCGATCCGGTCTGATCTTAGTA
* * *
17348559 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA-ACGGGCGGGTGGGCGTGCGGGCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA-GGGCGGGCGAGCGTGCGGGCA
** * *
17348623 CTACTACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGCGACAGGTGGGTTTAGGC
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
* * *
17348688 ACATCTTGATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCCT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
17348753 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTT
* * * ***
17348818 TTTACGGTTCAAAATTTTTTAAAATTTTTTTGGAATCTGTTTTGGCCCCAAACTTGGTAGACGTG
260 TTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
17348883 ATCCTTGTATTTTTGTTGGC--G----------TGC-G-T--AAACTCAAAGTGTGCAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
17348932 GTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
17348997 AATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATAT
* *
17349062 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCG
520 AAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCACACACCCCCCGGCCCCCCCGATCACCG
* *
17349127 GAACCCCAATGCCGCCGGTCAGGTTC-TC--CG--G---T---GATGCT-CC-GACAAAGAAAAA
585 GAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTGCCTGACGAAGAAAAA
* * * *
17349179 TATGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTA
650 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC-T--TC--G---GATC-T-
* * * * *
17349244 GACTGGTAATGAACTCCGTATGCTTACACTAGGAATGAACTCCGTATTCCTAAGTCAACCCACGA
705 -AC--G--A-G---TCCATAT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGA
* * ** * * *
17349309 AACGAGCGTACGGGCACTCAACCGACCAGAGGGGTAGGATGCACAAGCCGGGGATCGGCCCGGTC
760 AACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * * * *
17349374 CCCCTCTGCGTGCTGCCAATCCTGTTGCCGCAACCCTCAATCCGGTCTAATCTTAG-A
825 CCCCTCTACATGCTGCCGATCCTGCTACAGTAGCCCTCGATCCGGTCTGATCTTAGTA
17349431 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--GCGGGC--G-G-GCGGGCA
1 -TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGAGCGTGCGGGCA
* * * * * * * * *
17349488 CTACACCGGTCATATAGATGGGATGTGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGC
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
* * * *
17349553 ACATCTTCATATATCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCACTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
17349618 AAGCCTTCACGTTAAGTTTAATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTCAAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTT
*
17349683 TTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTG
260 TTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
17349748 ATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
17349813 TTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
17349878 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATAT
*
17349943 AAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCACACACCCCCCGG-CCCCCCGATCGCCG
520 AAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCACACACCCCCCGGCCCCCCCGATCACCG
*
17350007 GAACCCTAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTGCCCTGACGAAGAAAA
585 GAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTG-CCTGACGAAGAAAA
*
17350072 ATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTTAGATCTT
649 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC-T--T-C-G---GATC-T
*
17350137 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACA
705 --AC---G-A-G---TCCATAT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACG
* * * *
17350202 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGTCGGGT
759 AAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * *
17350267 CCCCCTCTACATGCTGCCGATCATGCTACAATAGCCCTCGATCCGGTCTGATCTTGGTA
824 CCCCCTCTACATGCTGCCGATCCTGCTACAGTAGCCCTCGATCCGGTCTGATCTTAGTA
*
17350326 TGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGAGCGTGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGAGCGTGCGGGCAC
* * * *
17350391 TACGGCTGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGACGGCAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGCA
* *
17350456 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
17350521 AGGCTTCACGTTAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTTT
*
17350586 TTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGA
261 TTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
17350651 TCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAATATTTTT
326 TCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
17350716 TGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
17350781 ATCTCAAATGCTCCTTAAGGGGGTGTGGGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATA
17350846 AGGGCCAAGTACCAGCACCCATCGCACACCATGTGTGCACAC-CCCCCCGGCCCCCCCGATCACC
521 AGGGCCAAGTACCAGCACCCATCGCACACCA--TGTGCACACACCCCCCGGCCCCCCCGATCACC
* * * * * * * * **
17350910 GGAACCCCAATACCGCCAGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
584 GGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTG-CCTGACGAAGAAA
* * *
17350975 AATGCGGCACCAGCACATGCCCGAGCGCAGCATGTGTTGCTGCAACCCTT-GG---TACG-GTCC
648 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTCGGATCTACGAGTCC
17351035 A-ATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
713 ATATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
* * * * *
17351099 CAGTCGACCACAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTG
778 CAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCG
** * *
17351164 ATCCTGCTGTAGTAGCCCTCGGTCCGGTCTGATCTTAGTC
843 ATCCTGCTACAGTAGCCCTCGATCCGGTCTGATCTTAGTA
* * * * * *
17351204 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCAGACGGGCGTGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGAGCGTGCGGGCAC
*
17351269 TACACCGGCCAGAGA
66 TACGCCGGCCAGAGA
17351284 TGTGTACAAG
Statistics
Matches: 2385, Mismatches: 262, Indels: 154
0.85 0.09 0.05
Matches are distributed among these distances:
847 48 0.02
849 2 0.00
850 5 0.00
851 2 0.00
853 1 0.00
856 1 0.00
857 4 0.00
858 1 0.00
860 2 0.00
861 151 0.06
862 80 0.03
864 1 0.00
865 256 0.11
866 3 0.00
867 3 0.00
868 1 0.00
869 5 0.00
871 3 0.00
872 3 0.00
873 168 0.07
874 1 0.00
875 1 0.00
876 194 0.08
877 109 0.05
878 219 0.09
879 3 0.00
880 42 0.02
881 194 0.08
883 3 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 2 0.00
891 6 0.00
893 2 0.00
894 257 0.11
895 5 0.00
896 2 0.00
898 7 0.00
900 1 0.00
901 2 0.00
902 464 0.19
903 9 0.00
904 119 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGAGCGTGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTAAAACTTT
TTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACACCATGTGCACACACCCCCCGGCCCCCCCGATCACCGG
AACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCTGGCGATGGTGCCTGACGAAGAAAAAT
ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTCGGATCTACGAGTCCATA
TCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCGATC
CTGCTACAGTAGCCCTCGATCCGGTCTGATCTTAGTA
Found at i:17351639 original size:26 final size:26
Alignment explanation
Indices: 17351603--17351655 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17351593 CCAGTCCAAT
* *
17351603 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17351629 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17351655 C
1 C
17351656 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17352528 original size:26 final size:26
Alignment explanation
Indices: 17352499--17352551 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17352489 CCTATCCGAT
*
17352499 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
17352525 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
17352551 C
1 C
17352552 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:17353016 original size:899 final size:892
Alignment explanation
Indices: 17351285--17353475 Score: 2967
Period size: 899 Copynumber: 2.5 Consensus size: 892
17351275 GGCCAGAGAT
* * * *
17351285 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTACTGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
17351350 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * ***
17351415 TAGGGGG-C--------GGCCAAGTACCAGCACCCATCGCACATCATGTATGCACACCACCCGCT
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCGTGCGCGCACACC-CCC-C-
* *
17351471 GGCCCCCCCGATCGTCGGAACCCCAA-AGCCGCCGATCAGGTTCTCC---G--G---C--AATGG
193 -GACCCCCCGATCGTCGGAACCCCAATA-CCG-CGGTCAGGTTCTCCGGTGATGCTCCGTAATGG
* * * * * *
17351525 TGCCCGAAAAAGAAAAATGCGGCACTAGCACATGCTCGAGCCCAGCTTGTGCTACCGCAACCCTC
255 TGCCCCAAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTC
* * *
17351590 GGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAACGAACTCCGTATG
320 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
17351655 CCTAAGTCAACCCATGAAACGAGCGTCCGGGCACTCAGCCGGCCAGAGGGCAGGATGCGCAAGCT
385 CCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCAGCCAGAGGGCAGGATGCGCAAGCC
* * * * * * * *
17351720 GGGGATCGACCGGGTCCCCCTCTATGTTCTGTCGATCCTGCTTCTATAACCCTCGATTGAATGTA
450 GAGGATCGACCGGGTCCCCCTCTACGTGCTCTCGATCCTGCTTCCACAACCCTCGATCGAATCTA
*
17351785 ATCTTAGACTGGGAATGAACTCCATATGCCTCAGCCAACGACGAAACGAGCGGGCAGGCGGGCGG
515 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACGACGAAACGAGCGGGCAGGCGGGCGG
* *
17351850 GCACTACGCCAGCCAGGGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
580 GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
17351915 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATAGTCC
645 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATAGTCC
* * * *
17351980 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAATAATTTTCAAAA
710 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCAACAATTTTCAAAA
** *
17352045 CTTTTTGTGGCTCGGGACTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACTTAGTAGAC
775 CTTTTTGCCGCTCAGGACTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACTTAGTAGAC
* *
17352110 ATGATCCTTGTATTTTTGTTGGTATGCACAAAATAATTCAGCTAAAAACTCGAA
840 ATGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAA
* * * *
17352164 GTGTACAAGATTTTGTAACCATTTGAAAAAAATGTCCCAATTTCAAACACTTTAATTGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
*
17352229 CAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17352294 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATCGTGCGCGCACACCCCCCGAC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCGTGCGCGCACACCCCCCGAC
17352359 CCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCGATAATGGTGCC
196 CCCCCGATCGTCGGAACCCCAATACCG-CGGTCAGGTTCTCCGGTGATGCTCCG-TAATGGTGCC
* * *
17352424 CCAAGGAAGAAAAATGTGTCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGT
259 CCAA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGT
*
17352489 CCTA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGTATGCC
323 CC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** ***
17352553 TAAGTCAACCCACGAAATGAGTGTGTGGGTGGTCAGCCAGCCAGAGGGTC-GCGATGCGCAAGCC
387 TAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCAGCCAGAGGG-CAG-GATGCGCAAGCC
* * * *
17352617 GAGGATCGGCCGGGTCCCCCTCTGCGTGCTACT-GATCCTG-TTGCCACAACCCTTGGTCCG-AT
450 GAGGATCGACCGGGTCCCCCTCTACGTGCT-CTCGATCCTGCTT-CCACAACCCTCGAT-CGAAT
* * *
17352679 CTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCG
512 CTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-CGACGAAACGAGC-GGGCAGGCG
* * * *
17352744 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGTGTGGTAGGTGG
575 GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
17352809 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCGTTTTTATGGCTTGTAAATTCATACAAT
640 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAAT
* * * *
17352874 GGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTT
705 AGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCAACAATTTT
* * * * * *
17352939 CGAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
770 CAAAACTTTTTGCCGCTCAGGACTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACTTAG
*** * * *
17353004 TAGTTGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTAGCTACAAACTCAAA
835 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAA
* *
17353062 ATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
* *
17353127 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17353192 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCGCACA-CCCCCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATC--GTGCGCGCACACCCCCCG
* ** * *
17353256 GCACCCCCGATCACCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGT
194 AC-CCCCCGATCGTCGGAACCCCAATACCGC-GGTCAGGTTCTCCGGTGATGCTCC-GTAATGGT
* * * * * **
17353321 GCCCCGACGAATAAAAATGCGGCACCAGCACATGGCCAAGCCCATCATGTGCTATTGCAACCCTC
256 GCCCC-AAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTC
** *
17353386 GGTCCAGTTTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
320 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* **
17353451 CCTAAGTCCACCCATTAAACGAGCG
385 CCTAAGTCAACCCACGAAACGAGCG
17353476 GTACTTTGGA
Statistics
Matches: 1149, Mismatches: 126, Indels: 53
0.87 0.09 0.04
Matches are distributed among these distances:
879 128 0.11
880 1 0.00
884 40 0.03
885 1 0.00
886 1 0.00
887 4 0.00
888 35 0.03
889 1 0.00
892 1 0.00
895 12 0.01
896 152 0.13
897 94 0.08
898 196 0.17
899 284 0.25
900 197 0.17
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCGTGCGCGCACACCCCCCGAC
CCCCCGATCGTCGGAACCCCAATACCGCGGTCAGGTTCTCCGGTGATGCTCCGTAATGGTGCCCC
AAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGTCCA
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTCCGGGCACTCAGCCAGCCAGAGGGCAGGATGCGCAAGCCGAGGAT
CGACCGGGTCCCCCTCTACGTGCTCTCGATCCTGCTTCCACAACCCTCGATCGAATCTAATCTTA
GACTGGGAATGAACTCCATATGCCTAAGCCAACGACGAAACGAGCGGGCAGGCGGGCGGGCACTA
CGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATAGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCAACAATTTTCAAAACTTTTT
GCCGCTCAGGACTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACTTAGTAGACATGATC
CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAA
Found at i:17353436 original size:26 final size:26
Alignment explanation
Indices: 17353400--17353451 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17353390 CAGTTTGATT
17353400 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17353426 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17353452 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17356530 original size:879 final size:878
Alignment explanation
Indices: 17353489--17363691 Score: 12051
Period size: 879 Copynumber: 11.6 Consensus size: 878
17353479 CTTTGGAACA
* * * **
17353489 TTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGTTGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
17353554 GATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTTAGCTAAAAACTCAAAATGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
17353618 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17353683 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGCTGGGGGATAGGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
17353748 CAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCCGATCGT
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGT
* * * * *
17353813 CGAAACCCTAATACCGCCGGTCAGGTTCTCCGGA-GATGCTCCTGCGATGGTGCCCAGATGAAGA
325 CGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATGCTCCGGCGATGGTGCCC-GATGAAGA
* *** *
17353877 AAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTTCAACCCTTGGTCCGGTCCGAT
388 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * * * * * *
17353942 TTTAGATTGCGAATGAACTCTGTTTGCCTAAGTCAACCCACGAAAGGAGCATGCGGTCACTTAGC
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17354007 CAGCCAGAGGGGCGGGATGCGCAAGCCAGAGATCGATCGGGTCCCCTTCTGCGTGCTGCCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
17354072 TGCTGCTGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
583 TGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17354137 CCGATGAAATGAA--------C-G--GGCGGGCGGGCACTACGTAGGCCAGAGAGACGAGATGCG
648 CCGATGAAA-CAACGGGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * *
17354191 CAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
712 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
17354256 --ATATTTTATGGCTTGTAAATTCAAACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCA
777 CCAT-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
17354319 AGATGACTCGTTTTGTGTTTTTCATGATTTTTGAAACT
841 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * * * ** *
17354357 TTTTACGATTCTGGATTTTTTAAAATTTTTTCGAAATGAGTTTTGTCCCCAATCTTTTTAGATGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
17354422 GATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAACTAAAAACTCGAGGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17354487 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
17354552 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGCGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
17354617 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCGACCCCCCCGATCGCC
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * *
17354682 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
326 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGATGAAGAAA
** * *
17354747 AATGTAGCACCAGCACATGCCCGAGCCCAGCATGAGCTGCCGTAACCCTTGATCCGGTCCGTTCT
390 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----T-C-G---G-TC-
* *
17354812 TTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCAT
444 ----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
17354877 GAAACTAGTGTACGGTCACTCAGCCGGCCAGAGTGGAGGGATGCGCAAGCCGGGGATCGGTCGGG
494 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* ** * ** *
17354942 TCCCCCTCTACGTGCTGTTGATCCTGCTGTC-GCAACCCTCGGTCTGGTCCAATCTTAGACAGGG
559 TCCCCCTCTGCGTGCTGCCGATCCTGCTG-CAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* ** * *
17355006 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGTAGGCGGA---CGGGCAGGCAAT
623 AATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-AACGGGCGGGCGGACGGCGGGCGGGCACT
* * *
17355068 ACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGCGGGTTTAGGCAC
687 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
17355133 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAA
752 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
17355198 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACT
817 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * ** * *
17355260 TTTTACGGGTCAGGATTTTTAAAAATTTTTCCACAACGATTTTTGGCCCCAAACTTGGTAGACGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
17355325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17355390 TGTGACTATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
17355455 AAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
17355520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCCCGATCG-C
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * * * * *
17355584 TGGAACCCCAATGCCGCCGGTTATGTTCTCCGACGATGCTCCGACGATGGTACGTCGACGAAGAA
326 -GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC-CCGATGAAGAA
*
17355649 AAATGCGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
389 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * * *
17355714 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGACATGAGCGTGCGGGCGTTCAGCC
454 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
17355779 GGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGTCGATCCT
519 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
** ** * * * *
17355844 GCTGCAGCAACCCTTTGTCTAGTCTGATCTTAGAATGGAAATGAACTCCGTATGCCTAAACCATC
584 GCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
17355909 TGAAGAAACAAGCGGGCGGGCGGACAGGCGGGCGAGCACTACGTCGGCCAGAGAGACGAGATGCG
649 CGATGAAACAA-CGGGCGGGCGGAC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * *
17355974 CAAGCCGTGCATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATG
712 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
17356039 CCATTTTTATGGTTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATAGCAA
777 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
17356104 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
842 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * *
17356141 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGCA-TTTT-GTCCCAAACTTGGTAGACA
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACG
* *
17356204 TGATCCTTGAATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC-AGAGTGTACAAGAT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGAT
* * *
17356268 TTTGTGACCATTTG-AAAAAGAGTCCCCCTTTCAGACACTTTAATGGCCACTGGCAGCAAACCTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * ** *
17356332 TAAAATCTCAAATGTTCTTTAAGGGGGTGTAAGTTCTCTAGGTTTGATGACTGATAGGGGGCCAT
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
** * * * * *
17356397 TATAAGGGCCAAGTACCAAAACCCATCTCACATCATGTGCGCACACCCCTCGACTCCCCCGATCA
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * **
17356462 TCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATGCTCCGGCGATGGTACTCCGACAAAGA
324 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC-CCGATGAAGA
* * *
17356527 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGAT
388 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
17356592 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ***
17356657 CGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCACCCTCTGTACGCTGCCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
17356722 TGCTGCCA-CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGCATACCTAAGCCA
583 TGCTG-CAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17356786 ACCAACGAAATGAGCGGGTGGGC-G--GGCGGGCGGGCA-TCACGTCGGCCAGAGAGACGGGATG
647 ACCGATGAAA-CAACGGGCGGGCGGACGGCGGGCGGGCACT-ACGTCGGCCAGAGAGACGGGATG
* * * * *
17356847 CGCATGCCGTGGATCGA-AGGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCCTGCGA
710 CGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
17356911 ATGCCATTTTTATGGCTTGTAAATTCACACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGG
774 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17356976 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACC
839 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * *
17357016 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGATGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* ** *
17357081 GATTCTTGTATTTTTGTTTTCATGGA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17357145 TGTGACGATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17357210 AAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAAGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
17357275 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTC
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * *
17357340 GGAACCCCAATGTCGCCGGTCAGGTTTTCTGGCGATGCTCGAGCGATGCTCCGGCAATGGTGCCC
326 GGAACCCCAATGCCGTCGGTCAGG---T-T--C--T-C-CGA-CGATGCTCCGGCGATGGTGCCC
* * * * * *
17357405 GACGAAGAAAAATGCGGTACCAGGACATGCCCGAGCCCAGCTTGTGCTGCGGTAAACCTCTGTCC
380 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACC-C--T-C
*
17357470 GATCTGATCTTAGACTGGGAATGAGCTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAA
440 G----G-TC-----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
17357535 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGAGG
484 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *
17357600 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGC--CATGACCCTCGGTCCGGTCTGAT
549 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCAGCA--ACCCTCGGTCCGGTCTGAT
* * * * *
17357663 CTTAGACTGGGTATGAACTTCGAATGCCTAAGCCAACCGATG--A-AACGAGCTGGCGGACGGGC
612 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAACGGGCGGGCGGAC-GGC
* * *
17357725 GGGCGGGCACTACGTCGGCCAGAGAGACGGCATGCGCAAGCCGTGGATCAATAGGGTCGTAGGTG
676 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17357790 GGTTTAGGCACATCTTCATATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
741 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17357855 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
806 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
17357920 TTGAAACT
871 TTAAAACT
* * * * *
17357928 TTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACATGGTAGATGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
17357993 GATGCC-TGTATTTTTGCTAGTATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTACAAGATT
66 GAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
17358057 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
17358122 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-C---
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
**
17358183 -----GGCCAAGTACCAGCACCCATCGCACATCATGTATGCACACCACCCGCTGGCCCCCCCGAT
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-C-GGCCCCCCCGAT
* * * *
17358243 CGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGTCGATAGTGCCCCGACGAA
322 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGATGAA
** *
17358308 GAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCG
386 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* * * *
17358373 ATCTTAGACTGGGAGA-GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGGGTGCGGTCACTC
451 ATCTTAGACTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
17358437 AACCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCACCCTCTGTGTTCTGCCGA
515 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * ** *
17358502 TCCTACTATC-GCAACACTCGGTCCGGTATGATCTTTGACCAGGAATGAACTCCGTATACCTAAG
580 TCCTGCT-GCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
17358566 CCAACCAATGAAACCAGCGGGTGGGC-G--GGCGGGCGGGCA-TCACGCCGGCCAGAGAGACGGG
644 CCAACCGATGAAA-CAACGGGCGGGCGGACGGCGGGCGGGCACT-ACGTCGGCCAGAGAGACGGG
* * **
17358627 ATGCGCATGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
707 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
17358692 CAATGCCATTTTTATGGCTTGTAAATTCACACAATGGACCCTTAAGCCTTCACGTGAAGTTTCAT
772 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
17358757 GGGAATACGACTCGTTTTCTATTTTTCACGATTTTCAAAAAC-
837 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TAAAACT
* * * *
17358799 TTTTGCGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
** *
17358864 GATCCTTGTATTTTT-TTTTCATGGA-AAAAAAATT-AGCTAAAAACTCGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
17358926 TGTGACGATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTATA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * * *
17358991 AAATCTCAAATGCTTTTTAAGGGGGTGTCAATTCTCAAGGTTTGATGAGGGATAGGCGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
17359056 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* ** *
17359121 GAAACCCCAATGTAGTCGGTCAGGTTTTTCGGCGATGCTCGGGCGATGCTCCGGCGATGGTGCCC
326 GGAACCCCAATGCCGTCGGTCAGG---TT---C--T-C-C-GACGATGCTCCGGCGATGGTGCCC
* * * * * *
17359186 GAAGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCTTGTGCTGTCGTAAACCTTTGTCC
380 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAA-C-----CC
* *
17359251 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGACTAA
438 --TC-GGTC-----C--GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
17359316 GTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGG
484 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
** * * * * *
17359381 ATCGACCAGGTCCCCCTCTGCGTGTTGCCGATCTTGCTGCCA-CAACCCTCGATCTGGTCTGATC
549 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-CAGCAACCCTCGGTCCGGTCTGATC
* * * *
17359445 ATAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGATG--A-AACGAGCGGGCAGACGGGCG
613 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAACGGGCGGGCGGAC-GGCG
* * * *
17359507 GGAGGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGAT-GGGCGGTAGGTGG
677 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** *
17359571 GTTTAGGCACATCTTTGTATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
742 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17359636 GGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
807 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
*
17359701 TGAAACT
872 TAAAACT
* * * *
17359708 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACATGGTAGATGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
17359773 GATCCCTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17359838 TATGACCATTTGAAAAAAGTGTCCCCA-TTCTAAACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
17359902 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAGT
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17359967 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCTCCAGG-CCCCCCGATC
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-GGCCCCCCCGATC
* * * * * * *
17360031 GCCGGATCCCCAATGCCGCCGATCAGGTTCTCCGGC-ATGCTCAGGCGATGGTGCCTCGGTGAAG
323 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC-CGATGAAG
* *
17360095 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAATCTAA
387 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG----------
*
17360160 TCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
442 TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
17360225 CACGAAACGAACGTGCGCGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCC
491 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * * * * * *
17360290 GAGTCCCCATCTACGTGCTTCCGATTCTGCTACCA-CAACCCTCGATCCAGCCTGATCTTAGACT
556 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GCAGCAACCCTCGGTCCGGTCTGATCTTAGACT
* * *
17360354 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAA----CGGGC-GA--GCGGGCTGGC
620 GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-CAACGGGCGGGCGGACGGCGGGCGGGC
* * * *
17360412 ACTACGTCGGCCAGAGAGAC-GGATGCACATGCCGTGGATCGATAGAGTGGTAGGTGGCTTTAGG
684 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
17360476 CACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
749 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
17360541 TAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTTGAAACC
814 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTAAAAC
17360606 T
878 T
* * *
17360607 TTTTACTGTTCGGGATTTTTTAAAATTTTTTTGCAAGGAGTTTTGGCCCC-AACTTGGTAGACGT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
17360671 GATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACATGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17360736 TGTGAGCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATTGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
17360801 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
17360866 CAAGGGCCAAGTACCACCACCCATCGCACATTATGTGTGCACACCCCCCCGGCCCCCCCGATCGC
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGT
* * * *
17360931 CGGAACCCAAATGCCG-CTGGTCAGGTTCTCCGACGCTGCTCCGGTGATGGTGCCCCGACGAAGA
325 CGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGATGAAGA
** *
17360995 AAAATGCGGCACCAG--CATGTGC-AG-CCA--A-----------AACCCTCGATCCGGTCCGAT
388 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* ***
17361043 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT-AAAGCGCTCAGC
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
17361107 CGGCCAGAGGGGCGGGATACGCAAGACGTAGATCAGTCGGGGCCCCCTCTGCGTGCTGCCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * * *
17361172 TGCTACCGCAACCCTCAGTTTGATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
583 TGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
17361237 CCGATG--A-AA---------TGA--GCGGGCGGG----ACGT---------------GATGCGC
648 CCGATGAAACAACGGGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *** *
17361269 AAGCCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCAAATGC
713 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17361333 CATTTTTAAGGCTTGTAAATTCATACAA-GAGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
778 CATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17361397 GACGATTCATTTTCTATTTTTCATGATTTTCAAAACT
842 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * *
17361434 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCTCAAACTTGGTAGACG
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACG
*
17361499 TGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
17361564 TTGTGACCATTTCAAAAAAGTGTCCCCATTTAAAACACTTTAATGGCTACTGGCAGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17361629 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATA-GGGGCCAAT
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* **
17361693 ATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCAGGCCAGCCCGATCG
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCG
* * * *
17361758 TCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGATGATGCTCCGACGAAGGTGCCCCGGTGAAG
324 TCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGATGAAG
* * * * **
17361822 AAAAATGCGACGCCATCACATGCCCGAGCCCAGCATGTGCTGTCC-TAACCCTCGGTCTAGTCCG
387 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCGGTCCG
* * *
17361886 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCA
451 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
17361951 TCCGGCCAGAGGGGTAGGATGCGCAAGCCAGGGATCGG-CTGGGTCCCCTTATGCATGCTGCCAA
516 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
17362015 TCTTGCTGCCA-CAACCCTCAGTCCGATCTCATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
580 TCCTGCTG-CAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** * * * * * * *
17362079 CCAACCGATG--A-AACGTGCAGGTGGGCGGACGGATGGGTACTATGCCGACCAGGGAAACGAGA
644 CCAACCGATGAAACAACGGGCGGGCGGACGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* *
17362141 TGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
708 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
17362206 AATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
773 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
17362271 GCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACT
838 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * * **
17362312 TTTTACGGTTCGAGAATTTTTAAAATTTTTTTGGAAGAAGTTTTTGGCCCCAATCTTATTAGACG
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACG
* * *
17362377 TGATCCTTTTATTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
65 TGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
17362442 TTTGTGACCATTTGAAAAAAGTGTCCCCACTTAAGACACTTTAATGGCTACTGGCAGCAAACTTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
17362507 TAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * **
17362572 TATAAGGGCCAAGTACTAGCACTCATCGCACATCATGTGCGCACACCCCCCAGGCCTGCCCGATC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATC
* * * * * * ** *
17362637 GTCGAAACCCCAATACCGTCGATCAGGTTCTCCGATGGTGCTTCGATGATGGTGCCCCAGTGAAG
323 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCGA-TGAAG
* * * ** * * * *
17362702 AAAAATGCGGCACCATCGCTTGCCCGAGCATAGCATGTGCTGTCGTAACCCTCGGTGCGGCCCGA
387 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
17362767 TCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTTCAG
452 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17362832 CTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGTTGCCGATC
517 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
17362897 TTGCTGTC-GTAACCCAT-TGTCCGGTCTCATCTTTGACT-GGAATGAAGTCCGTATGCCTACGC
582 CTGCTG-CAGCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
17362959 CAACCGATGAAATGAGCAGGTGGGC--A-GACGGGCGGGCACTACGCCGGCCAGAAAGACGGGAT
645 CAACCGATGAAA-CAACGGGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
*
17363021 GCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
709 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * *
17363086 ATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGG
774 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
17363151 CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACT
839 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * *
17363191 TTTTGCAGTTCAGG----------A-TTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACAT
1 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
17363245 GATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17363310 TGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
17363375 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
17363440 TAAGGGCCAAGTACCAGCACTCATCGCATATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCG-
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGT
* * * *
17363504 CGGGAACCCTAATGCCG-CTGGTCAGGTTATCCGACGATGCTCC-ACGATGGTGCCCCGGTGAAG
325 C-GGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGATGAAG
* * * *** * *
17363567 AAAAATGTGGCACCAGCAGATGCCCGAGCCCAACATGTGCTGCTTTAACCCTCAGTCTGGTCCGA
387 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
17363632 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCG
452 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17363692 GGCGGGCACT
Statistics
Matches: 8088, Mismatches: 958, Indels: 581
0.84 0.10 0.06
Matches are distributed among these distances:
827 57 0.01
828 250 0.03
829 212 0.03
830 5 0.00
831 2 0.00
832 3 0.00
834 1 0.00
843 4 0.00
845 68 0.01
846 123 0.02
847 11 0.00
851 2 0.00
853 1 0.00
854 1 0.00
855 118 0.01
856 50 0.01
857 2 0.00
858 10 0.00
861 1 0.00
862 2 0.00
864 1 0.00
865 118 0.01
866 269 0.03
867 34 0.00
868 337 0.04
869 217 0.03
870 8 0.00
871 417 0.05
872 11 0.00
873 5 0.00
874 41 0.01
875 281 0.03
876 230 0.03
877 250 0.03
878 200 0.02
879 857 0.11
880 416 0.05
881 222 0.03
882 13 0.00
883 7 0.00
884 51 0.01
885 21 0.00
886 52 0.01
887 23 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 4 0.00
892 7 0.00
893 10 0.00
894 178 0.02
895 8 0.00
896 24 0.00
897 81 0.01
898 430 0.05
899 99 0.01
900 3 0.00
901 26 0.00
902 337 0.04
903 489 0.06
904 45 0.01
905 5 0.00
906 13 0.00
907 41 0.01
908 14 0.00
909 207 0.03
910 227 0.03
911 16 0.00
912 623 0.08
913 190 0.02
914 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCGATGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ATGAAACAACGGGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTAAAACT
Found at i:17357514 original size:26 final size:26
Alignment explanation
Indices: 17357478--17357533 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17357468 CCGATCTGAT
* *
17357478 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17357504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17357530 CTTA
1 CTTA
17357534 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17359167 original size:11 final size:11
Alignment explanation
Indices: 17359150--17359179 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17359140 TCAGGTTTTT
17359150 CGGCGATGCTC
1 CGGCGATGCTC
*
17359161 GGGCGATGCTC
1 CGGCGATGCTC
17359172 CGGCGATG
1 CGGCGATG
17359180 GTGCCCGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.10, C:0.30, G:0.43, T:0.17
Consensus pattern (11 bp):
CGGCGATGCTC
Found at i:17359288 original size:26 final size:26
Alignment explanation
Indices: 17359259--17359310 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17359249 CCGGTCTGAT
*
17359259 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17359285 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17359311 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17364354 original size:717 final size:706
Alignment explanation
Indices: 17362925--17364376 Score: 2094
Period size: 717 Copynumber: 2.0 Consensus size: 706
17362915 GTCCGGTCTC
* * * *
17362925 ATCTTTGACT-GGAATGAAGTCCGTATGCCTACGCCAACCGATGAAATGAGCAGGTGGGCAGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCAGGTGGGCAGACG
17362989 GGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGG
65 GGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGG
* * *
17363054 GTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGT
130 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
**
17363119 GGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTCAAGTTTCACAGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* *
17363184 CAAAACTTTTTGCAGTTCAGGATTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATC
260 CAAAACTTTTTGCAGTTCAGGATTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACATGATC
* * *
17363249 CTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
325 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
17363314 ACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
390 ACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
17363379 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
455 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * **
17363444 GGCCAAGTACCAGCACTCATCGCATATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCGCGGGA
520 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCGGCTCCCCCGATCGCGCAA
* * ** *
17363509 ACCCTAATGCCGCTGGTCAGGTTATCCGACGATGCTCCACGATGGTGCCCCGGTGAAGAAAAATG
585 ACCCCAATACCGCTGGTCAGGTTATCCGACGATGCTCCACGATGGTGCCCCGACGAAGAAAAATA
* * *
17363574 TGGCACCAGCAGATGCCCGAGCCCAACATGTGCTGCTTTAACCCTCAGTCTGGTCCG
650 CGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTTTAACCCTCAGTCTGGTCCA
* * *
17363631 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CG-AGG-GGGCGGGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCAGGTGGGCAGACGG
* * * *
17363693 GCGGGCACTACGTCGGCTAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
66 GCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
**
17363758 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17363823 GTCCCTTGAGCCTTCACGTGAAGTTTCACAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
196 GTCCCTTAAGCCTTCACGTCAAGTTTCACAGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
* * *
17363888 AAAACTTTTTGCGGTTCGGGATTTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAAATT
261 AAAACTTTTTGCAGTTCAGG-------------A-TTTTTCGGAAGGAGTTTTGGCCCCAAAATT
* * *
17363953 TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGT
312 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
* * * *
17364018 ACAATATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGC
377 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGC
* * *
17364083 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGGGGGATAGG
442 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGG
*
17364148 GGGCCAATATAAGGGCCAATTACCAGCACCCATCACACATCATGTGCGCACACCCC-CCAGGGC-
507 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCC--GGCT
** ** *
17364211 CCCCTCGATCGC-CAAACCCCAATACCGCTGGTCAGGTTCA-CCGGTGATGCTCTGGCGGTGGTG
570 CCCC-CGATCGCGCAAACCCCAATACCGCTGGTCAGGTT-ATCCGACGATGCTC-CACGATGGTG
*
17364274 CCCCGACGAAG-AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTTTAACCCTCA
632 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTTTAACCCTCA
17364338 GTCTGGTCCA
697 GTCTGGTCCA
* *
17364348 ATCTTAGACTGGCAATGAACTCTGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
17364377 TTAGACTGGG
Statistics
Matches: 663, Mismatches: 63, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
703 207 0.31
704 3 0.00
705 1 0.00
706 9 0.01
707 33 0.05
716 3 0.00
717 381 0.57
718 26 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (706 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCAGGTGGGCAGACGG
GCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTCAAGTTTCACAGCAAGACGACTCATTTTCTATTTTTCACGATTTTC
AAAACTTTTTGCAGTTCAGGATTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACATGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCGGCTCCCCCGATCGCGCAAA
CCCCAATACCGCTGGTCAGGTTATCCGACGATGCTCCACGATGGTGCCCCGACGAAGAAAAATAC
GGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTTTAACCCTCAGTCTGGTCCA
Found at i:17364379 original size:26 final size:26
Alignment explanation
Indices: 17364350--17364402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17364340 CTGGTCCAAT
17364350 CTTAGACTGGCAATGAACTCT-GTATG
1 CTTAGACTGGCAATGAACT-TGGTATG
*
17364376 CTTAGACTGGGAATGAACTTGGTATG
1 CTTAGACTGGCAATGAACTTGGTATG
17364402 C
1 C
17364403 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTTGGTATG
Found at i:17366101 original size:26 final size:26
Alignment explanation
Indices: 17366072--17366124 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366062 CCGGTCTGCT
*
17366072 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17366098 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17366124 C
1 C
17366125 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17366795 original size:26 final size:26
Alignment explanation
Indices: 17366745--17366797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366735 CTAGTCCGAT
**
17366745 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17366771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17366797 C
1 C
17366798 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17367592 original size:26 final size:26
Alignment explanation
Indices: 17367556--17367634 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17367546 TTGGTTCGAT
*
17367556 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
17367582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17367608 GTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17367634 C
1 C
17367635 CTAAGTGAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.