Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 90 of 117
Found at i:17369183 original size:26 final size:26
Alignment explanation
Indices: 17369154--17369206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17369144 TCGGTCCGAT
17369154 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17369180 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17369206 C
1 C
17369207 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17374114 original size:902 final size:902
Alignment explanation
Indices: 17371994--17374316 Score: 3256
Period size: 902 Copynumber: 2.6 Consensus size: 902
17371984 GGCTTGTAAA
* * *
17371994 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAT
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
* * * **
17372059 GGTTTGGGATTTTTTAAATTTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
*
17372124 TGTATTTTTGTGGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGT-TGCATGCAC-AAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17372189 CATTTGAAAAATGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
194 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17372254 CAAATGCTCTTT-AGAGGGGTGTGAGTTCTCGAGGTTTGGTTAGGGATAGGGGGCCAATATAAGG
259 CAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
17372318 GCCAAGTACCAGCACCCATCGGACATCATATGCGCACA-CCCC-CCAGCCCCCCCGATCGCCAGA
323 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCGGCCCCCCCGATCACCGGA
* * * * ** *
17372381 ACACTAATGCCACCGGTCAGGTTCTCCGATGATGCT-TCGACGATGGTGCCCCGGTGAGGAAAAA
388 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCT-GACGATGGTGCCCCGACGAAGAAAAA
* * * * * *
17372445 TACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCACAACCCTCGGTCTGATTTGATGTTC
452 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTC
* * ** * *
17372510 AACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGA
517 AACTGGAAATGAACTCCGTATGCTTACACTACGAATGAACTCCGTATGCCTAAGTCAACCCACAA
* * * *
17372575 AGCGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCTAGGGATTGGCCGGGTC
582 AACGAGCGTGCGGGCGTTCAGCCAGCCAGAGAGCCGAGATGCGCAAGCCAGGGATTGGCCGGGTC
* * * *
17372640 CCCCTCTACATGCTGTCAATCCTGCTGCTATAACCCTCCATCCGGTCTGATTTTAGACTGGGAAT
647 CCCCTCTACATGCTGTCAATCCTACTGCTACAACCCTCCATCCGGTCCGATCTTAGACTGGGAAT
* *
17372705 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCGGGCGGGCACTAC
712 GAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-CAGA--GGCGGACGGGCGGGCGGGCACCAC
* * * * *
17372770 GCCGCCCAGAGAGACGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
773 GCCGCCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGAACATC
* * *
17372835 ATCATATTTCTACATGTCAATGCCATTTTTATGGCTTGTAAATTCGTACACTGGTTCCTTAAGCC
838 ATCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCGAACAATGGTTCCTTAAGCC
*
17372900 TTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
* * * * *
17372965 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAGTTGGTAGACAAGATACT
66 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * *
17373030 TGTATTTTTGTTGATATTCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTG-CATGCACAAGAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17373095 AATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCT
194 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17373160 CAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGG
259 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
17373225 CCAAGTACCAGCACCCATCACACATCCTGTGTGCTCACCCCCTCCTTGGCCCCCCTGATCACCGG
324 CCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCC--GGCCCCCCCGATCACCGG
* *
17373290 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCTCGACGAAGAAAAA
387 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAA
*** *
17373355 TGTAGCACCAGCACATGCCCGAGCCCAGTATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTT-
452 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTC
* *
17373419 AGACTGGAAATGAACTTCGTATGCTTACACTACGAATGAACTCTGTATGCCTAAGTCAACCCACA
517 A-ACTGGAAATGAACTCCGTATGCTTACACTACGAATGAACTCCGTATGCCTAAGTCAACCCACA
* * *
17373484 AAACGAGCGTGCGGGCGCTT-AGCCGGCCAGAGAGCCGAGATGCGCAAGCCGGGGATTGGTCGGG
581 AAACGAGCGTGCGGGCG-TTCAGCCAGCCAGAGAGCCGAGATGCGCAAGCCAGGGATTGGCCGGG
* * * * *** *
17373548 TCCCCCTCTGCATGCTG-CTGATCCTACT-ATCGCAACCCTTGGTTCGGTCCGATCTTAGACTGG
645 TCCCCCTCTACATGCTGTC-AATCCTACTGCT-ACAACCCTCCATCCGGTCCGATCTTAGACTGG
* *
17373611 GAATGAACTCTGTATGCCTAAGCCAACCGACG-AA-A-TGA-GCGGACGGGCGGGCGGGCACCAC
708 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACACAGAGGCGGACGGGCGGGCGGGCACCAC
* *
17373672 GCCGGCCAGAGAGACGGGATGCGCGAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGAACAT
773 GCCGCCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGAACAT
* * *** *
17373737 CTTCATTTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTC-AACAATGG-TCCATTAGG
837 CATCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCGAACAATGGTTCC-TTAAG
17373800 CC
901 CC
* * *
17373802 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
* * * **
17373867 GGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTCTAGCATCAAACTTGGTAGACATGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
17373932 TGTATTTTTGTTAGCATGCACAAGGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTT-GCATGCACAA-GAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17373997 CATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
194 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
**
17374062 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCTTGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
259 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17374127 CCAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCT-CGGCCCCCCCGATCATCGGAA
324 CCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCGGCCCCCCCGATCACCGGAA
* * *
17374191 CCCCAATGCAGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAATAAAAATA
389 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATA
* *
17374256 CGGCACCAGCACATGCCCGAGCCCAGCATTTGCCA-CTGCAACCCTCGGTCTGGTCTGATCT
454 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATC-GCAACCCTCGGTCTGGTCTGATCT
17374317 GATCTTAGAC
Statistics
Matches: 1255, Mismatches: 145, Indels: 41
0.87 0.10 0.03
Matches are distributed among these distances:
898 1 0.00
899 131 0.10
901 4 0.00
902 381 0.30
903 86 0.07
905 7 0.01
906 319 0.25
907 7 0.01
908 2 0.00
909 5 0.00
910 309 0.25
911 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (902 bp):
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGCATGCACAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCGGCCCCCCCGATCACCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTCAACT
GGAAATGAACTCCGTATGCTTACACTACGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
AGCGTGCGGGCGTTCAGCCAGCCAGAGAGCCGAGATGCGCAAGCCAGGGATTGGCCGGGTCCCCC
TCTACATGCTGTCAATCCTACTGCTACAACCCTCCATCCGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACACAGAGGCGGACGGGCGGGCGGGCACCACGCCGCCCA
GAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGAACATCATCATATT
TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCGAACAATGGTTCCTTAAGCC
Found at i:17375076 original size:26 final size:26
Alignment explanation
Indices: 17375037--17375089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17375027 CTGGTTTGAT
* *
17375037 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17375063 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17375089 C
1 C
17375090 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17376012 original size:26 final size:26
Alignment explanation
Indices: 17375939--17376005 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
17375929 CTAATCTTCA
*
17375939 ACTGGGAATGAACTCCGTACGCTTAG
1 ACTGGGAATGAACTCCGTATGCTTAG
* *
17375965 ACCGAGAATGAACTCCGTATGCTTAG
1 ACTGGGAATGAACTCCGTATGCTTAG
17375991 ACTGGGAATGAACTC
1 ACTGGGAATGAACTC
17376006 AGAATGCCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCTTAG
Found at i:17376894 original size:26 final size:26
Alignment explanation
Indices: 17376858--17376935 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17376848 CCAGTCCATT
17376858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17376884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17376910 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17376935 C
1 C
17376936 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 7 0.13
26 45 0.87
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17377816 original size:26 final size:26
Alignment explanation
Indices: 17377787--17377842 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17377777 CCAGTCTAAT
*
17377787 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17377813 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17377839 CTTA
1 CTTA
17377843 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17378713 original size:26 final size:26
Alignment explanation
Indices: 17378684--17378739 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17378674 CCGGTCTGAT
17378684 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
17378710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATA
17378736 CTTA
1 CTTA
17378740 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:17378984 original size:897 final size:898
Alignment explanation
Indices: 17374314--17383589 Score: 11215
Period size: 900 Copynumber: 10.3 Consensus size: 898
17374304 TCTGGTCTGA
** * *
17374314 TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGGACG
* * * *
17374379 GGCGGG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAAAAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17374443 GTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCAT
130 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA-TGGCTTGTAAATTCAT
* * * *
17374507 GCAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
17374572 ATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
259 ATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
17374637 CCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
17374702 TTTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
17374767 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATAAGTGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
17374832 AAGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCC-CG-C
* * * * * ** *
17374897 CCCCCGATCATCGAAACCCCAATGCCGTCGGTCAGGTTCTCTAGCAATGCTTTGACGATGGTG-C
581 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCC
* * *
17374961 CCGGACGAAGAAAAAT-TCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
646 CCGG-TGAAGAAAAATGT--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
* * * *
17375025 GTCTGGTTTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGAGAATGAACTCCGTATGC
708 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
17375090 CTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCC
773 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* *** ** * *
17375155 -TGGATCGGTAGGGTCCCCCTCTATGTGCTGTCGATCCTACTACCGTC-ACCCTCGGTCCGG
838 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCG-CAACCCTCGGTCCGG
* * * * *
17375215 TCCGATCTTCGACTTGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCCGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAG-C-A--
* * * * * * * *
17375280 GGCGGACGGGAGGGCGGGCACTATGCTGGCCAAAGAGACGGGATGCGCAAGCTGTAGATCAATAA
58 -GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * * *
17375345 AGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTA
122 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
*
17375410 AATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-----T-TT
187 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
17375469 TTT-A--TTTTTTAAAA--TTTTGTGG-TCGGGATTTTTTAAAATTTTTTCCGAAGGAG-TTTGG
252 TTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
17375527 TCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTATTGGCATGCATAAAAAAATTTAGCTAAAA
317 -CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * * *
17375592 ATTTGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATAG
381 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
17375657 CTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
446 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
17375722 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
511 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACC
* * * * *
17375787 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCACCGACGA
575 CCCC-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGA
* * *
17375852 TGGTGCCCCGGGGAAGAATAATGCAT-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
639 TGGTGCCCCGGTGAAGAAAAATG--TGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAA
* * * *
17375916 CCCTCAGTCCAATCTAATCTTCAACTGGGAATGAACTCCGTACGCTTAGACCGAGAATGAACTCC
702 CCCTC-G------------GTC--C--GG--T---CT--G-A-TCTTAGACTGGGAATGAACTCC
* * * * *
17375981 GTATGCTTAGACTGGGAATGAACTCAGAATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGCCGC
741 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
17376046 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCGGG-CCTGCCTCTGCGTGCTGC
806 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC-CCCTCTGCGTGCTGC
* * * * *
17376110 CAATCCTGCTGCCACAATCCTTGGTCCGG
870 CGATCCTACTGCCGCAACCCTCGGTCCGG
* *
17376139 TCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA--GG-CGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGACGG
* *
17376201 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTTGG
66 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * *
17376266 TGGGTTTGGGCACTTCTTCATATCTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
17376331 AATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
17376396 TTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAAATTTTTT-GGAAGGTGTTTTAGCCCC-AAC
261 TTTTAAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
17376459 TTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17376524 GTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGAA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
** * *
17376589 GCAAAGTTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
17376654 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCAAACCCCCCCGGCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA-CCCCCC-GCC
* * * ** *
17376719 CCCCGATCGTCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGGTGCAC
582 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCC
** * * * *
17376784 CGACGAAGAAAAATGCGGCAGCAACACATGCCTGAGCCCAGCATGTGCTGCCA-CAACACTCAGT
647 CGGTGAAGAAAAATG-TGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAAC-C-C--T
*
17376848 CCAGTCCATTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTT
706 -C-G----GTC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTT
*
17376913 AGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACG-AACGAGCGTGCGGGCGCTCAACCGG
749 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * *
17376976 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCTAGGTCCCCCTCTACGTGCTGTCGATGCCC
814 CCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGAT-CCT
* * * ** **
17377041 CCTGGCACAACCCTCAATTTGG
877 ACTGCCGCAACCCTCGGTCCGG
* * *
17377063 T-TAGATCTTAGACTGGGAATGAACTCCGTATACCTAACCCAACCGACGAAA-GAAGCGAGCGGG
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGC-AGCGGA
* * * *
17377126 CAGGCGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGTGCAAGCCGTGGATCAATAGGGTGGT
63 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
17377191 AGGTGGGTGTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
128 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
17377256 TACAATGTTCCCTTAAGCCTTCACGTGAAGTTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
193 TACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
17377321 CGATTTTTGAAACTCTTTACGGTT-TGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCA
257 CGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
17377385 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAA
322 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
17377450 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACT
387 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACT
* *
17377515 GGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAG
451 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
17377580 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCC
516 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GACAC-CCCCC
* * ** *
17377645 GGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGACACTCTGGCGATGGT
579 -GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGT
** * *
17377710 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAG-CCAGCATGTGCTGCCGCAACCCTC
643 GCCCCGGTGAAGAAAAATGT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTC
* * * * *
17377774 GGTCCAGTCTAATCTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATG
707 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
17377839 CTTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
772 CCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * ** *
17377903 CCGAGCATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCGA
836 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * * * *
17377966 TCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCGACCGATGAAACGAGCGGGTGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGGACG
* * * *
17378031 GGCGGGCGGGCACTACGTCGGCCAAACAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17378096 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATTCCTTTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17378161 CAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * **
17378226 TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAACTTTTTCGGAAGGGGTTTTAGAACCAAAC
260 TTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
17378291 TTGGTAGACGTGATACTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACCCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
17378356 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17378421 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCCGAGGTTTGACGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
17378486 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA-CCCCC-CCACC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCGCCCCC
* * * * * *
17378548 CGATCGTCGAAACCCCAAAGTCGCCGGTCAGGTTCTCTAGCGATGCTCCGGGGATGGTGCCCTGG
585 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGG
* * * *
17378613 GGAAGAAAAATGTGTCACCAGCAAATGCCCGAGCCTAGCATGTGCTGCAGCAACCCTCAGTCCGG
650 TGAAGAAAAATGTG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGG
* *
17378678 TCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCTTAAGT
714 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
17378743 CAACCCACGAAACGAGTGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
779 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * * *
17378808 CGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGTAACCCTTGGTCTGA
844 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * * *
17378863 TCCGATCTTAGACTGGAAATGAACTCGGTATGCCTAAGCCAACGGACGAAACGAGCATGCAGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GCGGACG
* *
17378928 GGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** * *
17378993 GTGGGTTTAGGCACATCTTTGTATTTTTACGTGCCCATGCCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
17379058 CAATGGTCCCTTAATCCTTCACATAAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * *
17379123 TTTTTAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTATTCGGAAGGAGTTTTGGCACCAAAC
260 TTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
17379188 GTGGTAGACGTGATCCTTTTATTTTTTTTGGCACGTAAAAAAAAATTTAGCTAAAAACTCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17379253 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGCCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
17379318 GCAAACCTGTAAACTCTCAAATGCTCTTTAA-GGGGTGTGGGTTGTTGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
17379382 GGGGGACAATATAAGGGCCAAGTACCAGCACCCATTGTACATCACGTGCAAACACCCCCCGCCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GACACCCCCCGCCCC
* * * * * * * * *
17379447 CCGATTGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGTGATAGTGCCCTG
584 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCG
* * * * *
17379512 GTGAAGAAAAATGCAGCACCAGCAGATGCCCGAGCCCAGCATGTGTTGTAGCAACCCTCGATCCG
649 GTGAAGAAAAATG-TGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCG
*
17379577 GTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
713 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
17379642 TCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCGAGATGCGCGAGCCAGGGA
778 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
17379707 TCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCTGCAACCCTTGGTTCGG
843 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * *
17379763 TCTGATCTTAGACTTGGGAATGAACTCTGTAAGCTTAAGCCAATCGACGAAACGAGCAGACGGAC
1 TCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-CGGAC
* *
17379828 GGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTA
64 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
17379893 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAATTCAT
129 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
17379958 ACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * ***
17380023 ATTTTTCAAAACTTTTTGCGGTTCGGGACTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCTATAA
259 ATTTTT-AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * * *
17380088 CCTTGGTAGATGTGATTCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCGGGTAAAAACTCGAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
17380153 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17380218 CAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17380283 TAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGAACACCCCCCGGC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCC-GC
* * * * * * *
17380348 TCCCCCGATTG-CTGGAACCCCAATGTCGTCGGTCAGATTCTCCGACGATGCTCCGGTGATGGTG
581 -CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
* * * *
17380412 CCCTGGTGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCAGCAACCCTCG
644 CCCCGGTGAAGAAAAATG-TGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
*
17380477 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTAAGC
708 GTCCGGTCTGATCTTAGACTGGGAATGAA---C-T---C-----C---G--T--A-----T--GC
* *
17380542 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGCC
747 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
17380607 GGTCGGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCAT-TGCATGGTCTACCAAT
812 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCTGCGT-G-CTGCCGAT
** * * * **
17380671 CCTGTTGTCGCAACGCTCGATCCAA
874 CCTACTGCCGCAACCCTCGGTCCGG
* * * ** * * * * *
17380696 TCTGATCTTAGACTGGCAATGATCTCCATATGAATAAGCCGACCGACGAAACGACCTGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGGACG
** * * * * *
17380761 GGCGGAAGGGCACTACGCCGACTAGAGAGATGGGATACGCAAGCCGTGGATCCATAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17380826 GTGAGTTTAGGCACATCTTCATATTTATACGTGCCAATGCCATTTTTATGGCTGGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
17380891 CAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
17380956 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTCCCAAAC
260 TTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
17381021 TTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17381086 GTACAAGATTTTGTGACCATTTGAAAAAAGT-TTCCCATTTCAGACACTTTAATGGCTACTTGTA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
17381150 GCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGTTGTGATTTCTCGAGGTTTGATCAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
17381215 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCAGCCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCCGCCCC
* * * * * *
17381280 CTCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCTCCGACGATGCTCCGACGATGTTGCCCC
584 C-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCC
* * * * * *
17381344 GGTGAAGAAAAATGCTGCACCAACACATGCCCGAGCCCAGGATGTGCTACTGCAATCCTCAGTCC
648 GGTGAAGAAAAATG-TGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCC
** ** * *
17381409 ACTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGCCTAA
712 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
17381474 GTCAACACACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAAGGGCGAGATGTGCAAGCCGGGG
777 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * **
17381539 ATCGGCTGGGTCCCCCTGTGTGTGCTGCCGATCTTACTGCCATAACCCTCGGTCCGG
842 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * **
17381596 TCTGATCCTAGACTGGGAATGAACTCTGTATGCCTAGGCCAACCGATAAAACGAGCAG-GCGAGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCG-GA-C
17381660 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
64 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
17381725 GCTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCAT
129 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
17381790 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
17381855 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTCTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAA
259 ATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
17381920 CTTGGTGGACGTGATCCTTGTATTTTTTTTCGCATGCATAAAAAAATTCAACTAAAAACTCGAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
17381985 TGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGT
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
17382050 AGCAAACCTGTAAAATCTCGAAA-GCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
454 AGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * * *
17382113 TAGGGGACCAATATAAAGGCCAAGTACCAGAACCCGTTGCACATCATGTGCACACACCCCCCGGT
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GACACCCCCC-G-
* * * *
17382178 CCCCTCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCT-TCGGCGATGCTTCGACGATGCT
580 CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCT-GGCGATGCTCCGGCGATGGT
* * *
17382241 GCCCCGGTGAAGAAAAATACG-GCACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCT
643 GCCCCGGTGAAGAAAAAT--GTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT
* ** * *
17382305 CGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCACATGCCTAGACTGGGAATGAACTCCATAT
706 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * * * * * ** *
17382370 TACTAAGTCAACACACAAAACGAGCGTGCGGGCGCTCAGCCGACAAGAAGGGCCAGATGTGCAAG
771 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
17382435 CCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCAG
836 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
*
17382498 TCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACC-A--ATTA--A--A-C-GA--
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCAGCGGACG
* * * * *
17382551 -GCGTGCGGGCACTATGCCAGCCAGAGAGACGGGATACGCAA-CCATGGATCGATAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
17382614 GTGGGTTTGGGCACATCTTCATATTTCTGCATGCCGATGCCATTTTTTTGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * ** * *
17382679 CAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGTTGACTCGTTTTCTATCTTTCACAA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
17382744 TTTTTAAAACTTTTTGAGGTTCAGGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
260 TTTTTAAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
17382809 CTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
324 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
17382874 TGTACAAGATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGC
389 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17382939 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTTTCGAGGTTTGATGAGGGAT
454 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
17383004 A-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA-CCCCCC-GC
* * *
17383068 CCTCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG-T---TC---GG-G-
581 CC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGC
** * *
17383124 --CAATG--G----A---GC-CC--CA-A-CCCCGAGCCCAGCATGTGCTGTC-GCAACCCTTGG
645 CCCGGTGAAGAAAAATGTGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCCTCGG
* * * * *
17383172 TTCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTCGACTAGGAATGAACT-CGTATGCC
709 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
17383236 TAAGTCAACTCAAGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCA
774 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * ** *
17383301 GGGATCGACCGTGTCGCCCTTTGCGTGTTGCCGATCCTATTGTTGCAACCCTCGGTCTGG
839 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * *
17383361 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGGC-AAA--A-C-G-AG-CGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGACGG
* * * *
17383419 GTGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCACAAGCCATGGATCGGTAGGGTGGTAGG
66 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** *
17383483 TGCGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGTCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
17383548 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
17383590 TGATCCTTGT
Statistics
Matches: 7309, Mismatches: 889, Indels: 387
0.85 0.10 0.05
Matches are distributed among these distances:
863 121 0.02
864 106 0.01
865 4 0.00
866 4 0.00
867 8 0.00
868 145 0.02
869 2 0.00
873 1 0.00
877 1 0.00
879 3 0.00
882 1 0.00
883 1 0.00
886 1 0.00
888 171 0.02
889 268 0.04
890 78 0.01
891 2 0.00
893 2 0.00
895 2 0.00
896 161 0.02
897 736 0.10
898 288 0.04
899 14 0.00
900 759 0.10
901 391 0.05
902 752 0.10
903 473 0.06
904 60 0.01
905 199 0.03
906 3 0.00
907 2 0.00
908 1 0.00
909 13 0.00
910 151 0.02
911 5 0.00
912 163 0.02
913 3 0.00
914 3 0.00
916 2 0.00
917 2 0.00
918 6 0.00
919 5 0.00
920 4 0.00
921 14 0.00
922 53 0.01
923 388 0.05
924 351 0.05
925 19 0.00
926 1 0.00
927 13 0.00
928 277 0.04
929 205 0.03
930 373 0.05
931 245 0.03
932 219 0.03
933 34 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGACGG
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCCCGCCCCCC
GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGT
GAAGAAAAATGTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
Found at i:17379613 original size:26 final size:26
Alignment explanation
Indices: 17379584--17379633 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17379574 CCGGTCTGAT
17379584 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17379610 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17379634 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17380132 original size:900 final size:901
Alignment explanation
Indices: 17374314--17383589 Score: 11187
Period size: 902 Copynumber: 10.3 Consensus size: 901
17374304 TCTGGTCTGA
** * *
17374314 TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCAACGAAACGAGC-GAGCGGGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGA-CGGAC
* * * *
17374378 GGGCGGG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAAAAGGGTGGTA
65 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
17374442 GGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCA
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA-TGGCTTGTAAATTCA
* * * *
17374506 TGCAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCGTTTTTTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
17374571 GA-TTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
259 GATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACA
* * *
17374635 AACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGA
324 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGA
* *
17374700 AGTTTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
17374765 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATAAGTG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
17374830 ATAAGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG
517 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * * ** *
17374895 CCCCCCCGATCATCGAAACCCCAATGCCGTCGGTCAGGTTCT-CTAGCAATGCTTTGACGATGGT
582 -CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGT
* * * *
17374959 G-CCCGGACGAAGAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
645 GCCCCGG-TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT
* * * * *
17375023 CGGTCTGGTTTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGAGAATGAACTCCGTAT
709 CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
17375088 GCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAG
774 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* *** ** * *
17375153 CC-TGGATCGGTAGGGTCCCCCTCTATGTGCTGTCGATCCTACTACCGTC-ACCCTCGGTCCGG
839 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCG-CAACCCTCGGTCCGG
* * * * *
17375215 TCCGATCTTCGACTTGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCCGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAG-C-A--
* * * * * * * * *
17375280 GGCGGACGGGAGGGCGGGCACTATGCTGGCCAAAGAGACGGGATGCGCAAGCTGTAGATCAATAA
58 GACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * *
17375345 AGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTA
123 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
17375410 AATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-----T-TT
188 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
17375469 TTT----ATTTTTTAAAA--TTTTGTGG-TCGGGATTTTTTAAAATTTTTTCCGAAGGAG-TTTG
253 TTTCACGATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
17375526 GTCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTATTGGCATGCATAAAAAAATTTAGCTAAA
318 G-CCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAA
* * * * *
17375591 AATTTGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATA
381 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
17375656 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
446 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTG
*
17375721 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAC
510 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** * *
17375786 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCACCGACG
575 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCG
* * * *
17375851 ATGGTGCCCCGGGGAAGAATAATGCATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
640 ATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAA
* * *
17375916 CCCTCAGTCCAATCTAATCTTCAACTGGGAATGAACTCCGTACGCTTAGACCGAGAATGAACTCC
705 CCCTC-G---------A---TC--C--GG--T---CT--G-A-TCTTAGACTGGGAATGAACTCC
* * * * *
17375981 GTATGCTTAGACTGGGAATGAACTCAGAATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGCCGC
744 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
17376046 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCGGG-CCTGCCTCTGCGTGCTGC
809 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC-CCCTCTGCGTGCTGC
* * * * *
17376110 CAATCCTGCTGCCACAATCCTTGGTCCGG
873 CGATCCTACTGCCGCAACCCTCGGTCCGG
* *
17376139 TCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--A-GG-CG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
* *
17376200 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTTG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
17376265 GTGGGTTTGGGCACTTCTTCATATCTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17376330 CAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
17376395 -TTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAAATTTTTT-GGAAGGTGTTTTAGCC-CCA
261 TTTTTCAAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCACAA
* *
17376457 ACTTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
* *
17376522 GTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* ** *
17376587 AAGCAAAGTTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
17376652 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCAAACCCCCCCGG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* ** **
17376717 CCCCCCGATCGTCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGGTGC
582 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* ** * * * *
17376782 ACCGACGAAGAAAAATGCGGCAGCAACACATGCCTGAGCCCAGCATGTGCTGCCA-CAACACTCA
647 CCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAAC-C-C-
17376846 GTCCAGTCCATTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
708 -T-C-G---A-TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGC
*
17376911 TTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACG-AACGAGCGTGCGGGCGCTCAACC
750 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * ** * *
17376974 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCTAGGTCCCCCTCTACGTGCTGTCGATGC
815 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGAT-C
** * * ** **
17377039 CCCCTGGCACAACCCTCAATTTGG
878 CTACTGCCGCAACCCTCGGTCCGG
* *
17377063 T-TAGATCTTAGACTGGGAATGAACTCCGTATACCTAACCCAACCGACGAAA-GAAGC-GAGCGG
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGCAGA-CGG
* * * * *
17377125 GCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGTGCAAGCCGTGGATCAATAGGGTGG
63 ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
17377190 TAGGTGGGTGTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
17377255 ATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
17377320 ACGATTTTT-GAAACTCTTTACGGTT-TGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCC
257 ACGATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCA
* *
17377383 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTC
*
17377448 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTA
386 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTA
*
17377513 CTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
450 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17377578 AGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCC
514 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC
* * ** *
17377643 CCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-CTAGCGACACTCTGGCGAT
578 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGAT
** ** * *
17377707 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAG-CCAGCATGTGCTGCCGCAACC
642 GGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACC
* * * * * *
17377771 CTCGGTCCAGTCTAATCTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGT
707 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
17377836 ATGCTTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGC
772 ATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * **
17377900 AAGCCGAGCATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCG
836 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCG
*
17377965 A
901 G
* * * * ** *
17377966 TCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCGACCGATGAAACGAGCGGGTGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
* * * *
17378031 GGCGGGCGGGCACTACGTCGGCCAAACAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** * *
17378096 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATTCCTTTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17378161 CAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * *
17378226 TTTTT-GAAACTTTTTGCGGTTCAGGATTTTTTAAAACTTTTTCGGAAGGGGTTTTAG-AACCAA
261 TTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCA-CAA
* * * *
17378289 ACTTGGTAGACGTGATACTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACCCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
17378354 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
17378419 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCCGAGGTTTGACGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGA
17378484 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CCCCC--C
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * *
17378544 CACCCGATCGTCGAAACCCCAAAGTCGCCGGTCAGGTTCT-CTAGCGATGCTCCGGGGATGGTGC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGC
* * * * *
17378608 CCTGGGGAAGAAAAATG-TGTCACCAGCAAATGCCCGAGCCTAGCATGTGCTGCAGCAACCCTC-
647 CCCGGTGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
*
17378671 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATG
711 A-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
17378736 CTTAAGTCAACCCACGAAACGAGTGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGC
775 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * * * * *
17378801 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGTAACCCTTGGTCTGA
840 CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * * *
17378863 TCCGATCTTAGACTGGAAATGAACTCGGTATGCCTAAGCCAACGGACGAAACGAGCATG-CAGAC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GACGGAC
* *
17378927 GGGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
65 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * * *
17378992 GGTGGGTTTAGGCACATCTTTGTATTTTTACGTGCCCATGCCATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
17379057 ACAATGGTCCCTTAATCCTTCACATAAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* ** *
17379122 ATTTTT-AAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTATTCGGAAGGAGTTTTGG-CACCA
260 ATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCA-CA
* * * * *
17379185 AACGTGGTAGACGTGATCCTTTTATTTTTTTTGGCACGTAAAAAAAAATTTAGCTAAAAACTCGA
324 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGA
* *
17379250 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
17379315 CCAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGGTGTGGGTTGTTGAGGTTTGATGAGGGA
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * **
17379380 TAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATTGTACATCACGTGCAAACACCCCCC-GC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * *
17379444 CCCCCGATTGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGTGATAGTGCC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
17379509 CTGGTGAAGAAAAATGCAGCACCAGCAGATGCCCGAGCCCAGCATGTGTTGTAGCAACCCTCGAT
648 CCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGAT
*
17379574 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCT
713 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
17379639 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCGAGATGCGCGAGCCAG
778 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * *
17379704 GGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCTGCAACCCTTGGTTCGG
843 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * *
17379763 TCTGATCTTAGACTTGGGAATGAACTCTGTAAGCTTAAGCCAATCGACGAAACGAGCAGACGGAC
1 TCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGAC
* *
17379828 GGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTA
65 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
17379893 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
17379958 ACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
17380023 ATTTTTCAAAACTTTTTGCGGTTCGGGACTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCTATAA
260 ATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAA
* * * * *
17380088 CCTTGGTAGATGTGATTCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCGGGTAAAAACTCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAA
* *
17380153 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17380218 CAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
17380283 TAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGAACACCCCCCGGC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
17380348 TCCCCCGATTG-CTGGAACCCCAATGTCGTCGGTCAGATTCTCCGACGATGCTCCGGTGATGGTG
583 -CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * *
17380412 CCCTGGTGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCAGCAACCCTCG
646 CCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAA--C-C-
* *
17380477 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTAAGC
707 --C---TC-GATC-----C--GG--T---CT--G--ATCTTAGACTGGGAATGAACTCCGTATGC
* *
17380542 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGCC
750 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
17380607 GGTCGGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCAT-TGCATGGTCTACCAAT
815 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCTGCGT-G-CTGCCGAT
** * * * **
17380671 CCTGTTGTCGCAACGCTCGATCCAA
877 CCTACTGCCGCAACCCTCGGTCCGG
* * * ** * * * * * *
17380696 TCTGATCTTAGACTGGCAATGATCTCCATATGAATAAGCCGACCGACGAAACGACCTGGCGGGCA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
** * * * * *
17380761 GGCGGAAGGGCACTACGCCGACTAGAGAGATGGGATACGCAAGCCGTGGATCCATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
17380826 GTGAGTTTAGGCACATCTTCATATTTATACGTGCCAATGCCATTTTTATGGCTGGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
17380891 CAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17380956 -TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTCC-CAA
261 TTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCACAA
* * * *
17381019 ACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
* *
17381084 GTGTACAAGATTTTGTGACCATTTGAAAAAAGT-TTCCCATTTCAGACACTTTAATGGCTACTTG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
17381148 TAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGTTGTGATTTCTCGAGGTTTGATCAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17381213 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGC
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
17381277 CCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TCTCCGACGATGCTCCGACGATGTTGC
583 CCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * * * *
17381341 CCCGGTGAAGAAAAATGCTGCACCAACACATGCCCGAGCCCAGGATGTGCTACTGCAATCCTC-A
647 CCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGA
** ** * *
17381405 GTCCACTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGC
712 -TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
17381470 CTAAGTCAACACACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAAGGGCGAGATGTGCAAGCC
776 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * **
17381535 GGGGATCGGCTGGGTCCCCCTGTGTGTGCTGCCGATCTTACTGCCATAACCCTCGGTCCGG
841 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* * * ** *
17381596 TCTGATCCTAGACTGGGAATGAACTCTGTATGCCTAGGCCAACCGATAAAACGAGCAGGC-GAGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGA-C
17381660 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
65 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
17381725 GCTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
17381790 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
17381855 A-TTTTCAAAACTTTTTGCGGTTCGGGATTTTCTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAA
260 ATTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAA
* * *
17381919 ACTTGGTGGACGTGATCCTTGTATTTTTTTTCGCATGCATAAAAAAATTCAACTAAAAACTCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
*
17381984 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17382049 TAGCAAACCTGTAAAATCTCGAAA-GCTCTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * * *
17382113 TAGGGGACCAATATAAAGGCCAAGTACCAGAACCCGTTGCACATCATGTGCACACACCCCCCGGT
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
* * * * * *
17382178 CCCCTCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGACGATGCTG
582 CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * * * *
17382242 CCCCGGTGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCG
646 CCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
* * ** * * **
17382307 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCACATGCCTAGACTGGGAATGAACTCCATATTA
711 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * ** *
17382372 CTAAGTCAACACACAAAACGAGCGTGCGGGCGCTCAGCCGACAAGAAGGGCCAGATGTGCAAGCC
776 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
17382437 GGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCAG
841 GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
**
17382498 TCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA-C--C--AATTA--A-AC-GA--
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
* * * * *
17382551 -GCGTGCGGGCACTATGCCAGCCAGAGAGACGGGATACGCAA-CCATGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
17382614 GTGGGTTTGGGCACATCTTCATATTTCTGCATGCCGATGCCATTTTTTTGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * ** * *
17382679 CAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGTTGACTCGTTTTCTATCTTTCACAA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17382744 TTTTT-AAAACTTTTTGAGGTTCAGGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
261 TTTTTCAAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCACAA
*
17382808 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
* *
17382873 GTGTACAAGATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17382938 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTTTCGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17383003 TA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* *
17383067 CCCTCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGG-T-T----C--T-CT--GGCGAT-GT-
582 CCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * * * *
17383119 --TC-G-G--G--CAATGGAGC-CC--CA-A-CCCCGAGCCCAGCATGTGCTGTC-GCAACCCTT
646 CCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCCTC
* * * * * *
17383170 GGTTCGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTCGACTAGGAATGAACT-CGTATG
710 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
17383234 CCTAAGTCAACTCAAGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGC
775 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * ** *
17383299 CAGGGATCGACCGTGTCGCCCTTTGCGTGTTGCCGATCCTATTGTTGCAACCCTCGGTCTGG
840 CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
* *
17383361 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGGC-AAA--A-C-GA--G-CG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
* * * *
17383418 GGTGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCACAAGCCATGGATCGGTAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
17383482 GTGCGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGTCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
17383547 CAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
17383590 TGATCCTTGT
Statistics
Matches: 7313, Mismatches: 877, Indels: 403
0.85 0.10 0.05
Matches are distributed among these distances:
863 121 0.02
864 105 0.01
865 3 0.00
866 4 0.00
867 10 0.00
868 147 0.02
869 5 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 1 0.00
878 1 0.00
879 5 0.00
881 2 0.00
882 1 0.00
884 1 0.00
888 168 0.02
889 273 0.04
890 67 0.01
891 1 0.00
893 3 0.00
894 1 0.00
895 1 0.00
896 162 0.02
897 734 0.10
898 288 0.04
899 16 0.00
900 752 0.10
901 403 0.06
902 774 0.11
903 471 0.06
904 59 0.01
905 166 0.02
906 2 0.00
907 3 0.00
908 1 0.00
909 11 0.00
910 152 0.02
911 5 0.00
912 162 0.02
913 3 0.00
914 5 0.00
915 4 0.00
916 1 0.00
917 2 0.00
918 7 0.00
919 6 0.00
920 4 0.00
921 13 0.00
922 58 0.01
923 388 0.05
924 349 0.05
925 19 0.00
926 1 0.00
927 15 0.00
928 247 0.03
929 213 0.03
930 367 0.05
931 277 0.04
932 217 0.03
933 33 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGACG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
GTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGATCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGG
Found at i:17380525 original size:26 final size:26
Alignment explanation
Indices: 17380489--17380564 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
17380479 CTGGTCTGAT
17380489 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17380515 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17380541 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17380565 TGCCTAAGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17383223 original size:26 final size:25
Alignment explanation
Indices: 17383187--17383236 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
17383177 TCTGATCTTA
*
17383187 GACTGGGAATGAAATCCGTATGCCTC
1 GACTAGGAATGAAAT-CGTATGCCTC
*
17383213 GACTAGGAATGAACTCGTATGCCT
1 GACTAGGAATGAAATCGTATGCCT
17383237 AAGTCAACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (25 bp):
GACTAGGAATGAAATCGTATGCCTC
Found at i:17384906 original size:26 final size:26
Alignment explanation
Indices: 17384870--17384922 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384860 GCTATCTGAT
17384870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17384896 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17384922 C
1 C
17384923 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17386675 original size:26 final size:26
Alignment explanation
Indices: 17386624--17386676 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386614 CTGGTCCGAT
* * *
17386624 CTTAGATTGGGAATGAATTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17386650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17386676 C
1 C
17386677 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17389318 original size:26 final size:26
Alignment explanation
Indices: 17389289--17389341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17389279 CCAGTCCGAT
17389289 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17389315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17389341 C
1 C
17389342 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17390216 original size:26 final size:26
Alignment explanation
Indices: 17390187--17390239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17390177 CCAGTCCGAT
*
17390187 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17390213 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17390239 C
1 C
17390240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17391091 original size:897 final size:897
Alignment explanation
Indices: 17385759--17395541 Score: 12188
Period size: 899 Copynumber: 11.0 Consensus size: 897
17385749 CCAGTCCCAT
* * * * * * *
17385759 CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * ** * * * *
17385824 CGCCCAGAGAGGCGGGATGCATAAGCCGAGGATCGACTGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * * *
17385889 TATTGCTGCAACCCTCGATCCT-GTCCAATCTTGGACTGGGAATGAACTCCGTATCCCTAAGCCA
130 TGCTGCCGCAACCCTC-AT-CTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17385953 ATCGACG-AA--A-C-GA---GCGGGCGGGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCC
193 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17386010 GTTGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-CATGCCAAAGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATT
* ** *
17386074 TTTATGGTTTGTAAATTCATACGGTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * **
17386139 CTCGTTTTCTATTTTTCATGATTTTTCAAACTATTTGCGGTTCATGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
17386204 AAAGGTGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAACA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-A
17386269 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17386334 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGAGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17386399 CTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
17386464 TGTTCGCACACCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
712 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG-
* * * * * *
17386529 T-ATCCTCTGGTGATGGTGCACCGATGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCA
776 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * ** * * *
17386593 TGTGCTGCTACGACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAATTCTATATG
841 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
17386650 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * ** * * * ***
17386715 CGGCTTGAGGGGTGTGATGCGAAAGTCAAGGATCGATCGGGTTCCCCTCTACGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * *
17386780 TGCTGCCGCAACCCTTGGTCTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCC-TCATCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17386844 ACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAACC
193 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
17386909 GTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATT
17386973 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
17387038 CTCATTTTCTAATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTATTTC
388 CTCGTTTTCT-ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
17387103 GGAAGGAGTTTTGGCCACAACCTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAA
452 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
* * *
17387168 AATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
17387233 GACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGTTCTTTTAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17387298 TCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
17387363 ATGTGCGAAAACCCCCCCGCCCCCCTCGATCGCCCGGAAACCCAGTGCCGCCGGTCAGGTTCT-C
711 ATGTGCGCACACCCCCCGGCCCCCC-CGATCG-CCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
17387427 GGAGATGCTCCGGCGATGGTGCCCCCG-CGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCA
774 GGTGATGCTCCGGCGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
17387491 GCACGTGCTGCCGCAACCCTCGATCC-G---G-TC-----C-------G--------AT-
838 GCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * ** *
17387525 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
17387590 AGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATTGGCCGGGTCCCCCTCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * * ** * *
17387655 TGCTATCGTAACCCTCGATCCGATCCCATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAA
130 TGCTGCCGCAACCCTC-ATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** * * * * *
17387720 CCGACAAAACGAGCAGGCCGACGAGCTACCGGGCATTATGCCGACCAGAGAAACGGGATGCGCAT
194 CCGACGAAACGAGC--G--GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17387785 GCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCC
255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCC
*
17387849 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17387914 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTCTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
17387979 TC-AGATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
450 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
* * *
17388043 AAAAATTCAGCTAAAAACTCGAAGCGTACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
17388108 TTAGACGCTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
17388173 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACTAATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
17388238 ATCATGTGCGCACACCCCCCGG-CCCACCGATCGTCGGAACCCCAATGCAGTCAGTCAGG-T-T-
708 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** *
17388299 C-----T-C-CC-GCGATGGTGCCCCGATAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
773 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
17388356 GCATGTGCAGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAATATG
838 GCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
17388416 CTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAACGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
17388481 CGGCCAGAGGTGTGGGATGCGCAATCCGGGGATCGACCGGGTCCCCCGCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
17388546 TACTGCCGGAACCTTTAGTCTGGTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCA-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17388611 CCGACGAAATGAGTGGACGGGCGGACGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCG
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
17388676 TGGATCGATAAGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCT-ACATGCCAATCCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTT
17388740 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
17388805 T-GCTTTTCTATTTTTCATGATTTTTGAAACTTTTTCCGGTTCGAGATTTTTTAAAATTTTTTCG
389 TCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* **
17388869 GAAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAC
453 AAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-
* * * ** *
17388933 AATTCATCTAAAAACTCGAAGTGTACAAGATATTGTGACAATTTGAAAAAAAAGTCCCCATTTGA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17388998 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17389063 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *** *
17389128 ATGTGCGCACACCCCCCAGCCCCCCCGATTGCCGAAACCCCAATGCCGTTGGTCAGGTTCAATGA
711 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
*** * * **
17389193 TGATGCTCCGGCGATGGTGCCCCGGTAAAGAAAAATACGACACCAGCACATGCATGAGCCCAGCA
776 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
17389258 TGTGTTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
841 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
17389315 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * * *
17389380 CGGCCAGAGGGGCAGGATGCATAAGCCGAGGATCGGCCGGGTCCCCCACTGCGTGTTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
17389445 TGCTGCAGCAACCCTCAGT-TCAGTCTGATCTTAGACTGGGAATGGACTCCGTGTGCCTAAGCCA
130 TGCTGCCGCAACCCTCA-TCT-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** ** * *
17389509 ACCGACGAAACGAGCGGGTGACCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAACCC
193 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ** *
17389574 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTTCCTGGAAATGGCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATT
*
17389638 TTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17389703 CTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
17389768 GAAGGAGTTTTTGCCCCAAGCTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
* * *
17389833 ATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17389898 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
17389963 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCA-CCATTCGTACATC
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATC
* * * * * * *
17390027 ATGTACACACACCCCCCGG-CCCCCCGATTGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGA
711 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * *
17390091 CGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCAGAGCCCAGCA
776 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
17390156 TGTGCTGCCGCAACCTTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
841 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
17390213 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
17390278 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGTATCGACCGGGTCCCCCGCTGTGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGG-ATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** *
17390343 TGCTGCCATAACCCTCCATCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
130 TGCTGCCGCAACCCT-CATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17390408 CTGACGAAACGAGCGGACGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17390473 TGTATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATA-TTCTGTC-TACCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTT
* * *
17390536 TTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCATTCACGGGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17390601 TTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCTTCGA
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * *
17390666 AAGTAGTTTTGGCCCCAAACTTGGTATACGTGATGCTTGTATTTTTGTTGGGATGCACAAAAAAT
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAT
* *
17390731 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGGC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
17390796 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
17390861 CGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * ** **
17390926 TGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCTGTCGGTCAGGTTCAACGGCAA
714 TGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
** * *
17390991 TGCTCCGATGATGGTGCCGCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
779 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * ** * * **
17391056 GCTACCTTAACCCTCGATTTC-GTCTAATTTTAGACTGGGAATGAACTTCGCATG
844 GCTGCCGCAACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * **
17391110 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** *
17391175 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* *** * * **
17391240 TACTGCTATAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCA-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17391305 CCGACGAAACGA---G-TGGGC-GGCGGGCACTACGCCAGG-CAGAGAGACAGGATGCGCAAGCC
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCC-GGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
17391364 TTGGATCGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTCTAT-GTGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATT
* *
17391428 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17391493 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCA
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-
* **** ** *
17391558 AAAATCCTTTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
452 GAAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* * *
17391623 AAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17391688 AGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17391753 TTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAAGGCAAAGCACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
17391817 CATGTCCGCACACCCCTCGGTCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCA
710 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
*
17391882 GTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
775 GTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** ** * * *
17391947 ATGTGCTACAACAAAACTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 ATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
17392005 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACGCACAAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * **
17392070 TGGCCAGAGGGGCGGGATGCGCAA-CTCAGGGATCGATCGGGTTCCCCTCTGCGTGTTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-C-GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * **
17392134 CTACAGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCA-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17392199 ACCGACGAAACGAGCGGGCTGGCGGGCGGGCGGGCA-TGACGCCGGCTAGAGAGACGGGACGCGC
193 ACCGACGAAACGAGC--G--GACGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
17392263 AAGCCATGCATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTTATATTTCT-ACGTGCCAATG
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATG
* * *
17392327 CAATTTTTATGGTTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
318 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17392392 GACGGCACGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTT
383 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
17392457 CTTCAAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATTCTTGTATTTCTT-TTGGCATGCAC
448 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCAC
* * * * *
17392521 AAAAAGTTTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCA
512 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* **
17392586 TTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCA
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
17392651 TGAGTTCTTGAGGTTTGATTAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * * **
17392716 ACATCATGTGCGCACACCACCTAGCACCCCCTATCGCCAGAACCGTAATGCCGTCGGTCAGGTTC
706 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
17392781 TACGGCGATGCTCCGGCGACGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
771 TCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
17392846 CAGCATGTGCTGCCGTAACCCTTGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTATG
836 CAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
17392908 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * ** * *
17392973 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
17393038 TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTC-ATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17393103 CTGATGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCG
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17393168 TGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATATTTCTGT-GTGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTT
* * *
17393232 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAAACCAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
17393297 TCGTTTTCTATTTTTCATGATTCTTAAAACTTTCTGCAGG-TCGGGATTTTTTAAAAATTTTTCG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCG
*
17393361 AAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTGTTTGGCTTGCACAA
453 AAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTG-TTGGCATGCAC-A
**
17393425 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCTCCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17393490 TCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
17393555 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATTGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * **
17393620 ATCATGTGTGCACACCCCCCCCGTTCCCCCCGATCGCCTGAACCCCAATGCCACCGGTCAGGTTC
708 ATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
17393685 TCCGGTGATG-TCTTGGCGATGGTGCCCTGACGAAGAAAAATGCAGCACCAGGACATGCCCGAGC
771 TCCGGTGATGCTC-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
17393749 CCAGCATGTGCTGTCG-AA------A-CC-CT-CGA--TT----T--G---G---TCCA-AT-
835 CCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
17393786 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTGAACCCATGAAGTGAGTGTGCGGTCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
17393850 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGT--CCC-C--C-T-CTA-C-A---
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* **
17393903 TGCTACCGCAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCC-TCATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
17393968 CTGACG-AA--A-C-GA---GTGGGCGGGCACTACGTTGGCCAGAGAGACGGGATACGCAAGCCG
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17394025 TGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATATTTCTG-CGTGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTT
* * *
17394089 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAAACCAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * * *
17394154 TCATTTTCTATTTTTCATGATTCTCAAAACTTTCTGCAGG-TCGAGATTTTTTTAAAA-TTTTTC
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTCGGGA-TTTTTTAAAATTTTTTC
* * * *
17394217 GAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTACTTTTTTGTTTGGCTTGCATAA
452 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTG-TTGGCATGCA-CA
**
17394282 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCTCCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
17394347 TCAAACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
17394412 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
17394477 ATCATGTGTGCACACCCCCCCCGTTCCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTC
708 ATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
17394542 TCCGGTGATG-TCCTGGCGATGGTGCCCTGACGAAGAAAAATGCAGCACCAGGACATGCCCGAGC
771 TCCGGTGATGCTCC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
17394606 CCAGCATGTGCTGTCGAAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
835 CCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* ** * *
17394669 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAGCGAGTGTGCGGTCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
*
17394734 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT--CCC-C--C-T-CTA-CG----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** *
17394787 TGCTGCCGCAACCCTTGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCC-TCATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
17394852 CCGA-GGAA--A-C-GA---GTGGGCAGGCACTACGTTGGCCAGAGAGACGGGATACGCAAGCCG
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
17394909 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTG-CTTGCCAATTCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTT
* * *
17394973 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGGAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
17395038 TCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTATGATTCAGGATTTTTTAAAATTTTTTCGG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* *
17395103 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCAAAAAAAAT
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAT
* * * * *
17395168 TCAGCTAAAAACTAGAACTGTACAAGATTTTGTGACCATTTCAAAAAAGTGCCCCCATTTCAAAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
17395233 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
17395298 CGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCACATATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
17395363 TGTGCACACCCCCCCTGGCCCCCCCGATTGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCAGT
714 TGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
* * * *
17395428 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCATCAGCACATGCCCGAGCCCAACAT
777 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
17395493 GTGCTGCCGCAACACTCGGTTC-GGCTCGATCTTAGACTGGGAATGAACT
842 GTGCTGCCGCAACCCTCGATCCAGTC-CGATCTTAGACTGGGAATGAACT
17395542 TTGTATGCCT
Statistics
Matches: 7830, Mismatches: 896, Indels: 343
0.86 0.10 0.04
Matches are distributed among these distances:
857 612 0.08
858 12 0.00
860 2 0.00
861 1 0.00
862 1 0.00
864 8 0.00
865 128 0.02
866 5 0.00
867 3 0.00
868 2 0.00
869 4 0.00
870 4 0.00
871 1 0.00
872 1 0.00
873 3 0.00
874 4 0.00
875 196 0.03
876 9 0.00
877 90 0.01
878 309 0.04
879 181 0.02
880 333 0.04
881 14 0.00
882 9 0.00
883 21 0.00
884 415 0.05
886 7 0.00
887 465 0.06
888 31 0.00
889 2 0.00
890 5 0.00
891 331 0.04
892 81 0.01
893 142 0.02
894 11 0.00
895 415 0.05
896 356 0.05
897 504 0.06
898 427 0.05
899 1161 0.15
900 314 0.04
901 89 0.01
902 409 0.05
903 400 0.05
904 312 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:17392008 original size:26 final size:26
Alignment explanation
Indices: 17391979--17392031 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17391969 CCAGTCCGAT
17391979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17392005 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17392031 C
1 C
17392032 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17392918 original size:26 final size:26
Alignment explanation
Indices: 17392882--17392934 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17392872 CCAATTCGAT
17392882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17392908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17392934 C
1 C
17392935 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17394679 original size:26 final size:26
Alignment explanation
Indices: 17394643--17394695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17394633 CCGGTCCAAT
*
17394643 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17394669 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17394695 C
1 C
17394696 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17395072 original size:26 final size:26
Alignment explanation
Indices: 17395042--17395098 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
17395032 GACGACTCGT
** *
17395042 TTTTTATTTTTCACGATTTTTGAAAC
1 TTTTTATGATTCACGATTTTTGAAAA
* *
17395068 TTTTTATGATTCAGGATTTTTTAAAA
1 TTTTTATGATTCACGATTTTTGAAAA
17395094 TTTTT
1 TTTTT
17395099 TCGGAAGGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.07, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTTTATGATTCACGATTTTTGAAAA
Found at i:17396918 original size:26 final size:26
Alignment explanation
Indices: 17396880--17396932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17396870 CCGGTCCGAT
* *
17396880 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17396906 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17396932 C
1 C
17396933 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17398688 original size:26 final size:26
Alignment explanation
Indices: 17398658--17398710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398648 CCTATCCGTT
*
17398658 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17398684 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17398710 C
1 C
17398711 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17399566 original size:26 final size:26
Alignment explanation
Indices: 17399530--17399582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17399520 CTGGTCCAAT
* *
17399530 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17399556 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17399582 C
1 C
17399583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17400487 original size:26 final size:26
Alignment explanation
Indices: 17400458--17400510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17400448 CTGGTCCGAT
*
17400458 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17400484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17400510 C
1 C
17400511 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17401395 original size:26 final size:26
Alignment explanation
Indices: 17401357--17401409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17401347 CTGATCCGAT
*
17401357 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
17401383 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17401409 C
1 C
17401410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17401977 original size:26 final size:26
Alignment explanation
Indices: 17401948--17402000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17401938 CCGATCCGAT
17401948 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
17401974 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17402000 C
1 C
17402001 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17402120 original size:592 final size:592
Alignment explanation
Indices: 17400966--17402137 Score: 1767
Period size: 592 Copynumber: 2.0 Consensus size: 592
17400956 AAACTTGACA
* * * * *
17400966 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATT
1 TGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATCTCAAGTGTAAAAGATT
* *
17401031 TTGTGACCATTTGAAAAAAGTGTCCCTACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
17401096 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGT
131 AAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
* *
17401161 ATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCTCGGCCACCCCGATC
196 ATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCACCCCGATC
* * * * *
17401226 GTCGGAACCCCAGTGTCGCTGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCTCGGCAAAG
261 GCCGGAACCCCAATGTAGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCTCGACAAAG
* * * * * *
17401291 AAAAATGTGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCACAACCCTCGTTCTGATCCGA
326 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGATCCGATCCGA
* *
17401356 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
391 TCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
* * * *
17401421 CACAAAAGGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCAAGGATCGATC
456 CACAAAAGGAGCGTGCGAGCACTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCAAGGATCGATC
* * * *
17401486 GGGTCCCACTCTACATGCTGTCGATCCTGCTACCATAACCCTCAGTCCGATCTGATCTTAAATTG
521 GGGTCCCACTCTACATGCTCTCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAAATTG
17401551 GTAGATG
586 GTAGATG
17401558 TGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCAACGTGTAAAAGAT
1 TGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATCTCAA-GTGTAAAAGAT
* * *
17401622 TTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACATTTTAATGGTTACTGGCAGCAAACCTG
65 TTTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
17401687 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATATGGGGCCAA
130 TAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAA
* * * * * *
17401752 TATAAGGGCCAAGTGCTAGAACCCATCGCACATCATGTGCGCACGCCCCCCT-GGCC-CATCTGA
195 TATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCAC-CCCGA
* *
17401815 TCGCCGGAACCCCAATGTAGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGA
259 TCGCCGGAACCCCAATGTAGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCTCGACAA
17401880 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGATCCGATCC
324 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGATCCGATCC
*
17401945 GATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
389 GATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
* * * **
17402010 CCCACGAAATGAGCGTGCGAGCACTCAGTCAGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCG
454 CCCACAAAAGGAGCGTGCGAGCACTCAGTC-GGCCAAAGGGGCGGGATGCGCAAGCCAAGGATCG
* * * * *
17402075 ATCGGGTCCCCCTCTGCGTGCTACT-GATCCTACTACCGCAACCCTCGGTCCGATCCGATCTTA
518 ATCGGGTCCCACTCTACATGCT-CTCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTA
17402138 TACTGGGAAT
Statistics
Matches: 519, Mismatches: 57, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
590 1 0.00
591 215 0.41
592 302 0.58
593 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (592 bp):
TGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATCTCAAGTGTAAAAGATT
TTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
ATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCACCCCGATC
GCCGGAACCCCAATGTAGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCTCGACAAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTCGATCCGATCCGA
TCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
CACAAAAGGAGCGTGCGAGCACTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCAAGGATCGATC
GGGTCCCACTCTACATGCTCTCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAAATTG
GTAGATG
Found at i:17402213 original size:12 final size:11
Alignment explanation
Indices: 17402182--17402217 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
17402172 GATGAAACGA
*
17402182 GCGGCAGGCAG
1 GCGGCAGGCGG
17402193 GCGGCAGGCGG
1 GCGGCAGGCGG
17402204 GCGAGCAGGCGG
1 GCG-GCAGGCGG
17402216 GC
1 GC
17402218 ACTACGCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.14, C:0.28, G:0.58, T:0.00
Consensus pattern (11 bp):
GCGGCAGGCGG
Found at i:17403498 original size:904 final size:911
Alignment explanation
Indices: 17401548--17403844 Score: 3164
Period size: 904 Copynumber: 2.5 Consensus size: 911
17401538 TGATCTTAAA
* * *
17401548 TTGGTAGATGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AACG
1 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-G
* * *
17401612 TGTAAAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACATTTTAATGGTTACTGGC
65 TGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17401677 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAAGGAT
130 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * * *
17401742 ATGGGGCCAATATAAGGGCCAAGTGCTAGAACCCATCGCACATCATGTGCGCACGCCCCCCTGG-
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGC
* *
17401806 CCCATCTGATCGCCGGAACCCCAATGTAGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
260 CCCCTC-GATCG-CGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * *
17401871 CCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATA-TGCTGCCACAACCCTC
323 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA-AGTGCTGCCGCAACCCTC
* * * *
17401935 GATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
387 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
* * * *
17402000 CCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAGTCAGGCCAAAGGGGTGGGATGCGCAAG
452 CCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGACAGGCCAAAGGGGCGAGATGCGCAAG
* * * * *
17402065 CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACTGATCCTACTACCGCAACCCTCGGTCCGATC
517 CCGAGGATCGATCGGGTCCCCCTCTGCATACTACTGATCCTACGACCGCAACCCTCAGTCCGATC
* * * * * ** *
17402130 CGATCTTATACTGGGAATGAACCCCGTATGCCTAAGCCAATCGATGAAACGAGCGGCAGGCAGGC
582 CGATCTTAGACAGGCAATGAACCCCGTACGCCTAAGCCAACCGACAAAACGAACGG-AGGCA-GC
*
17402195 GGCAGGCGGGCGAGCAGGCGGGCACTACGCCAGCCAGTGAGACGGGATACACAAGCCGTGGATCG
645 GGCA---GGGC-AG-AGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCGTGGATCG
* * * * *
17402260 ATAGGGTGGTAGGTGGGTTTAGGTACATCTTGATATTTCTGCATGCCAATGCCATTTTTATGGCT
705 ATAGGGTGGTAGGTGAGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* *
17402325 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGGCTCGTTTTC
770 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTAGTTTTC
* * * *
17402390 TATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTT
835 TATTTGTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTT
17402455 TTAGCCCCAAAC
900 TTAGCCCCAAAC
** * *
17402467 TTTTTAGACGTGATCCTTGTCTTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
1 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * **
17402532 GTATAAGATTTTGTGGCCATTCGAAAAAAGTGTCCCCATTTTAGACACTTTAATATCTACTGGCA
66 GTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
17402597 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTAATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
17402662 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCAAACCCCCCCGGCC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCC
* * * * *
17402727 CCCTCAATCGTCGGAACCCCAATTTCGCCGGTCAGGTTCTCCAGTGATGCTCCGATGATGGTGCC
261 CCCTCGATCG-CGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * **
17402792 CCGGCGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCAAGTGCCACCGCAACCCTCGGT
325 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGT
* * * *
17402857 ATGGTCCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACGCCGTATGCCT
390 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
* * * *
17402922 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-ACCGGCCAGAGGGGCGAGATGCGCAAGCTG
455 AAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGACAGGCCAAAGGGGCGAGATGCGCAAGCCG
* * * * * * * * * * *
17402986 AGGATCGGTCGGGTCCTCTTCTGCATACT-GTCGATCTTGCGGCCGCAATCCTCAGTCTGGTCTG
520 AGGATCGATCGGGTCCCCCTCTGCATACTACT-GATCCTACGACCGCAACCCTCAGTCCGATCCG
*** *
17403050 ATCTTAGACAGGCAATGAACTTTGTACGCCTAAGCCAACCGACAAAATGAAC-G-GGC-G-GGCA
584 ATCTTAGACAGGCAATGAACCCCGTACGCCTAAGCCAACCGACAAAACGAACGGAGGCAGCGGCA
* * *
17403111 -GGC-G-GGCGGGCACTACGCC-GACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
649 GGGCAGAGGCGGGCACTACGCCAG-CCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGGTG
**
17403172 GTAGGTGAGTTCAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATT
713 GTAGGTGAGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
*
17403237 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTC
778 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTAGTTTTCTATTTGTC
* * * * * *
17403302 ACGATTTTTGAAACTTTTTATGGTTCG-GCATTTTTTAAAATTCTTTCGGAAGGATTTTTGGGCC
843 ACGATTTTTAAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTCTTTCGAAAGGAGTTTTAGCCC
17403366 CAAAC
907 CAAAC
* **
17403371 TTGGTAGACATGATCCTTGTATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
1 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
17403436 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
66 GTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17403501 GCAAACCTGTAAAATCTCAAATGCTCTTTATGGGTGTGTGGGTTCTCGAGGTTTGATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
17403566 GGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGCGCACACCCCCCAGGCC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCC
* * ** *
17403631 CCCTCGATCGCAGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTTGGCGATGGTGCC
261 CCCTCGATCGC-GGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * *
17403696 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGGGTCCAGCATGTGCTGCCGCAACCCTCGGT
325 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGT
*
17403761 CTGGTCCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
390 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
* * *
17403826 AAGCCAACCGACAAAACGA
455 AAGTCAACCCACGAAACGA
17403845 ACGGGCAGGT
Statistics
Matches: 1212, Mismatches: 159, Indels: 29
0.87 0.11 0.02
Matches are distributed among these distances:
903 3 0.00
904 652 0.54
906 1 0.00
908 3 0.00
912 4 0.00
913 1 0.00
915 3 0.00
917 2 0.00
918 111 0.09
919 425 0.35
920 7 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (911 bp):
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCC
CCCTCGATCGCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGTC
TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGAGCACTCAGACAGGCCAAAGGGGCGAGATGCGCAAGCCGA
GGATCGATCGGGTCCCCCTCTGCATACTACTGATCCTACGACCGCAACCCTCAGTCCGATCCGAT
CTTAGACAGGCAATGAACCCCGTACGCCTAAGCCAACCGACAAAACGAACGGAGGCAGCGGCAGG
GCAGAGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGGTGGTA
GGTGAGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTAGTTTTCTATTTGTCACG
ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCGAAAGGAGTTTTAGCCCCAAA
C
Found at i:17403800 original size:26 final size:26
Alignment explanation
Indices: 17403771--17403823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403761 CTGGTCCGAT
17403771 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
17403797 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17403823 C
1 C
17403824 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17404550 original size:26 final size:26
Alignment explanation
Indices: 17404514--17404566 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17404504 CCAATCCGAT
17404514 CTTAGACTGGGAATGAACAT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
17404540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17404566 C
1 C
17404567 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17406336 original size:26 final size:26
Alignment explanation
Indices: 17406286--17406336 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17406276 CCGGTCTGAT
**
17406286 CTTAGACCGAGAATGAACTTTGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
17406312 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACCGAGAATGAACTCCGTAT
17406337 TCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17407221 original size:26 final size:26
Alignment explanation
Indices: 17407185--17407236 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17407175 CCAGTCCGAT
* *
17407185 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17407211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17407237 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17407374 original size:899 final size:898
Alignment explanation
Indices: 17403797--17414505 Score: 8964
Period size: 899 Copynumber: 12.1 Consensus size: 898
17403787 AATCCGTATG
* * * *
17403797 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAACGGGCAGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-A-G-GGGC-CG
*
17403862 TGGTCACTACGTCGACCAGAGAGACGGGATGCGCAA-ACCGTGGATCGATAGGGTGGTAGGTGGG
62 -GG-CACTACGTCGGCCAGAGAGACGGGATGCGCAAGA-CGTGGATCGATAGGGTGGTAGGTGGG
*
17403926 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
124 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17403991 GTCCCTTAAGCCTTTACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
189 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
17404056 GAAACTTTTT-CAGTTTGAGATTTTTTAAAATTTTTTCAGAAGCACTTTTGGCCCCAAAGTTGGT
254 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
17404120 GGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACA
319 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * * * *
17404185 ACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGAAGAAAA
384 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
* * *
17404250 CCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGG
449 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** *
17404315 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCATACCCCCCCAACCCCCTC
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCCC
* *
17404380 GATCGCCGGAACCCCAATG-CGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGCGCCCCGAC
578 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * *
17404444 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCC-TCGGTCCAA
643 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAG
*
17404508 TCCGATCTTAGACTGGGAATGAACATCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
708 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
17404573 CAACCCACGAAACGA----------G-T-----GGCCAGAGGGGCTGGATGCTCAAGCCGGGGAT
773 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGAT
* * * *
17404622 CGACCGGGTCCCCCTCTGGGTGCTGCCGATCCTACT-AT-CGTAACCCTCAGTCAGGTTCAAT
838 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTCCTAC--AACCCTCAGTCTGGTTCAAT
* * * ** *
17404683 CTTAGACTGGGAATGAACTCCATCTGCCTAAGCCAATCGACGAAACGAGCGGCCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGG--GCCGGG
* * * * * *
17404748 CACTACGCCGACCAGAGAGAC-GGATGCGTAAGCCGTGGATTGATAGTGTGGTAGGTGGGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17404812 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17404877 TTAAGCCTTCACGTCAAGTTTCATGGCAACATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
17404942 TTTTTGTGGTTAGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAA-TTGGTAGACA
259 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17405006 TGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* * *
17405071 TTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
17405136 AAAATCTTAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGATTGATGGGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
17405201 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGT
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGC
*
17405266 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
584 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
17405331 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCC-TCGGT-CTGATCCGA
649 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAG-TCCGA
* * * *
17405394 TCTTAGACTGGTAATGAACTCCGCATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
17405459 CATGAAACGAGCGTGCGGGCACTCAGCCGGCCA-AGGGGCGGGATGCACAAGCCGGGGATCGGTC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATC
* * * * * * * * * *
17405523 GGGTCCCACTCTGCGTGCTACCGATCCTGCTGCTACAATCATCAAT-TCGATCCGAT
843 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTCCTACAACCCTCAGTCT-GGTTCAAT
* * * *
17405579 CTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGAGGG-CGGG-CGGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGGCCGGGCA
** * * * *
17405642 CTACACCGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGA
66 CTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
17405707 ACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGC-------TT-ATACAATGGTCCTTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
17405764 AAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCACGATTTTTTAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * **
17405829 TTTGCGGCTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTCTTCACCCCAAACTTGGTAGACGTG
261 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-
*
17405894 GAT-CTTGTATTTTTGTTGGCATGCACCAAAACAAATTTAGCTAAAAACTCAAAGTGTACAAGA-
325 GATCCTTGTATTTTTGTTGGCATGCA-CAAAA-AAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* *
17405957 TTTGTTA-CATTTGAAAAAAGTGTCCCCATTTC-AGCACTTTAATGGCTACTGGCCAGCAAAGCC
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG-CAGCAAA--C
* *
17406020 CTGTAAAAGCTCAAATGCTCTTTCAATTGGGGTTGTGAGTTTCTCGAGGTTTGATGAGGGATAGG
450 CTGTAAAATCTCAAATGCTCTTT-AA--GGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGG
* * * * *
17406085 AGGCCAATATAAGGGCCAAGTACCAGCAGCCACCGAACATCATGTGCT-TACA-CCCCCGGCCCC
511 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TGCACACCCCCCGGCCCC
* * *
17406148 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGACCC
575 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * *
17406213 GACGTAAGAAAAAATGCAGCACCAGCACATG-CGGAGCCC-GTATGTGCTGCCACAACCCTT-AG
640 GACG-AAG-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGG
* * * * * *
17406275 TCCGGTCTGATCTTAGACCGAGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATTCC
703 TCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** *
17406340 TAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAATGGCAGGATGCACAAGCTG
768 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG
* * * * * * * * **
17406405 GGGATCGGTTGGGTCCCCCTTTGTGTGCCGCCAATCCTACTGCC-ACAACCCTCGGTCCGGTTTG
833 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CCTACAACCCTCAGTCTGGTTCA
17406469 AT
897 AT
* *
17406471 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGAGGGTGACCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGG-G-CCGGG
17406536 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17406601 GAACATCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** * * * * *
17406666 TTAAGCCTTCACGTGAAGTTTCACAGCAAGATGACTCATTTTCTATTTTTCTCTATTTTTGGAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
17406731 TTTTTGCGGTTGGGGATTTTTTAAAGTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
259 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
17406796 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCAAAGTGTACAAGATT
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
*
17406861 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
17406926 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
17406991 ATAAGGGCCAAATGCCAGCACCCATCGCACATCATTTGTGCACACCCCTCCGG-CCCCCTGATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC-CCGGCCCCCCCGATCG
* *
17407055 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGACGAAGA
583 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * *
17407120 AAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGTCGTAA-CCTTCGGTCCAGTCCGA
648 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAGTCCGA
* *
17407184 TCTTAGGCTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACC
713 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* *
17407249 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGATC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATC
* * * *
17407314 GGGTCCCCCTCTGCATGCTGCTGATCCTGCTCCTGCAACCCTCAGTCTGGTTCAAT
843 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTCCTACAACCCTCAGTCTGGTTCAAT
* * *
17407370 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-AGG-GGCCGGG
17407435 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17407500 GCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTTATGGCTTATAAATTCATACAATGGTCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
17407565 ATTAAGCCTTCATGTGAAGTTTCATGGCAGGACGACTTGTTTTTTATTTTTCACGATTTTTGAAA
193 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
17407630 CTTTTTGTGGTTC-ACGATTTTTGAAAATTTTTTCGGAAGGCA-TTTTGG-CCTAAACTT-G-A-
258 CTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAG
* ** * *** * ** *
17407689 A-GTG-TACAAG-A-TTTTG-TGACCAT-TTGAAAAAAAGT---CT-----C-CCCA-T-TTCAG
321 ACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA-
* * * * * * * ** *** * *
17407737 ACACTTTGATGGCTACTGGCAGCAAACCTGT-GAAATCTCAAATGCTCTTTAA-GG-----GG--
384 AGATTTTG-TGACCATTTG-A-AAAAAGTGTCCCCATTTCAAA--CACTTTAATGGCTACTGGCA
* ** * * * * * * ** **
17407793 G------TGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-GG---G-CCA-ATATA
444 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * * * ** *
17407836 -AGGGCGAA-GT-A---CC-AGCACC--CATCGCA---CATCAT-GTGTGCACAC-CCCCCCGAA
509 GGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCA-CATCATGTGTGCACACCCCCCG-G
* * * * * * * * * * *
17407887 CCCCCTATC-A-C-CGGAACCCCAATACCGTCGGTCAGGTTCTCCAGTGATGCTCTGGCGGTAGT
571 CCCCC--CCGATCGCCGGAACCCCA-A-TG-CCG-CCGG---T-CAG-G-TTCTCCGAC-G-A-T
* ** * ****** ** ** * * * * *
17407949 GCCCCGGTGA-AGAAATATG-CGATACCAGCATG-TGCTGCC-GTA-A-CCCTCGA-TCC-G---
621 GCTCCGACGATGGTGCCCCGACGA-AGAAAAATGCGGC-ACCAGCACATGCC-CGAGCCCAGCAT
** * *
17408003 GT-CTGCTCTTAGA--C-TGGGAAT-CACTCCGTATGCTTAGACTGGGAATGAAC-TC-----C-
683 GTGCTGC-CGCA-ACCCTTCGG--TCCAGTCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCT
* * * * *
17408056 --G--T----ATG----CC-TA----T--GTCAAACCACGAAACGAGTGTGGGGGTGCTCAACCG
742 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *** * * ** *
17408102 GCCA-AAGTGC-GG-T-CGATCGAGTCC--CCCTCTG-T-GTGCTACCGATCT---TGCTACCGC
807 GCCAGAGGGGCAGGATGC-A-CAAG-CCGGGGATC-GATCG-GGTCCCCCTCTGCGTGCTGCCG-
* * * * * * *
17408156 AACC--CTCGGTCTAGTCTGA-TCTTAGACTGGGAATGAATT
866 ATCCTACTC---CTA--C-AACCCTCAGTCT-GG-TTCAA-T
* * * * * *** * * ** * *** *
17408195 CTGTATGCCT---AA-GCCAACTGACGAAATGAGCT-GGCGGGCAGGCG-GGCGGGCACTA--TG
1 CT-TA-GACTGGGAATG--AACT-CCG-TATG-CCTAAGCCAACCGACGAAACGAGCGGGAGGGG
* * *** * * * *
17408252 CCGGCCA-AAGAAACGG-GATGCGCAAGCCGTGGAT-CG-ATAG-GGTGG-TACG-T-GGGTTTA
59 CCGGGCACTA-CGTCGGCCA-GAG--AGACG-GGATGCGCA-AGACGTGGAT-CGATAGGG--T-
* ** *** ** * * * ** * ***
17408309 GGCACATCTTCATATTTTTGCATGCCAATGC--CATTTTTTTGGCTTGTAAAT-TCA-TACAATG
114 GG--TA-GGT-GGGTTTAGGCA---C-AT-CTTCATATTTCT-GCATGCCAATGCCATTTTTATG
* * * * * * * *
17408370 ATCCCT-T-AA-GC---C--T--TCACGTGAAG-TTTCATG------------GCAAGATGACTC
169 --GCTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
17408412 GTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTCTAAAATTTTTTCGGAA
231 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
** *
17408477 GGAGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATT
296 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
17408541 CAACTAAAAACTCAAAGTGTACAAGTTTTTGTGACCATTTGAATAAAGTGTCCCCATTTTAGACA
361 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
* * * * *
17408606 CTTTAGTGGCTCCTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTT
426 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
17408671 GAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
491 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
17408736 GCGCACACCCCCCCGG-CCCCCCGATCGTCGAAACCCCAATACCACCGGTCAGGTTCTCCGACGA
556 GTGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * * * * *
17408800 TTCTCCGGCGATGGTGCCCCGATGAACAAAAATGCAGCACCAGTACATGGCCAAGCCCAGCATGT
620 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
17408865 GCTTCCGCAACCC-TCGGTCCGGTCTGATCTTAGACT-GGAATTGAACTCCGTATGCTTAGACTG
685 GCTGCCGCAACCCTTCGGTCCAGTCCGATCTTAGACTGGGAA-TGAACTTCGTATGCTTAGACTG
* * * * *
17408928 GGAATGAACTCCATATGCCTAAGTCAACACATGAAACGAGCGTACGGGCGCTCAGCCGGCTAGAG
749 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * *
17408993 GGGTAGGATACTCAAGCTGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTTCT-GTCG
814 GGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTCCT-A
* ** *
17409057 CAACCTTTGGTCTGGTTCGAT
878 CAACCCTCAGTCTGGTTCAAT
* *
17409078 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGCGGGCGGACAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG--AGG-GGC
* * *
17409143 CGGGTACTATGTCGGCCAGAGAGACGGGATGCGCAAG-CTGTGGATCGATAAGGTGGTAGGTGGG
60 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGAC-GTGGATCGATAGGGTGGTAGGTGGG
* *
17409207 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATG
124 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17409272 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTC
189 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
17409337 AAAACTTTTTACGGTTCGGGATTTTTTAAACTCTTTTT-GGAAAGAGTTTTGGTCCCAAACTCT-
254 GAAACTTTTTGCGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACT-TG
* * * ** *
17409400 GTAGACATGATCCTTGCATTTTTTTTGAAATGCACAAAAAAATTCAG-TAAAAAACTCGAAGTGT
317 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCAAAGTGT
* *
17409464 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGT
381 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* *
17409529 AAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGG
446 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
17409594 GGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCCGGCCCC
511 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCC
* * * ** **
17409659 CCCGATTGCCTGAA-CCCAAGGGCCGCTAGTCAGGTTCTCC-AGCGATGCTCCGGTGATGGTGCC
575 CCCGATCGCCGGAACCCCAA-TGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCC
* * * * *
17409722 CCGGCAAAGAAAAATGCAGG-ACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAA-CC--C-
638 CCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCG
17409782 -T-C-G---G----T---CT-GG--T---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGC
702 GTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * * ** *
17409824 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGGTATAGGGACGGGATGCGTAAACC
767 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC
* * * * * *
17409889 GGGAATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACC-GCAACCCTCAATCTGGTCC
832 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CCTACAACCCTCAGTCTGGTTC
17409953 AAT
896 AAT
* * * * *
17409956 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACTAAACGATCGGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGG-G-CCGGG
* * * * ** *
17410021 CACTACGCCGGCTAGAGAGACAGGATGCGCAAGCCACGGATTGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
17410086 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17410151 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTTCAAA
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAA
* **
17410216 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TGAATGGAGTTTTGGCGTCAAACTTGGTAGA
258 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGA
* * *
17410280 CGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGA
322 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
*
17410345 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
*
17410410 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
17410475 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGG--CCACCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCCCGAT
** * * *
17410538 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGTTCCGACGATGGTACCCCGGCGAA
581 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
** ** *
17410603 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTT-GGTCGGGTCT
646 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAGTCC
*
17410667 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
711 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
17410732 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCATGATGCGCAAGTCGGGGATCGA
776 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA
** * * * *
17410797 TCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTACCGT--AACCCTCAGTCCGGTTTAAT
841 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CC-TACAACCCTCAGTCTGGTTCAAT
* * *
17410855 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GAGG-GGCCGGG
* * * *
17410920 CACTACGTCAGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17410985 GCACATCTTCATATTTCTG-ACTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
129 GCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
17411049 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
193 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* ** * * * * * *
17411114 CCTTTTATGGTTCGAGATTTTTCAAAATTTTTTCAGAAAGTGTTTTTGCCACAAACTTGGTAGAC
258 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
17411179 GTGATCCTTGTATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
323 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * * * * *
17411244 TTTGTGACCATTTGAAAAAAGTATCCCTATTTTAGACACTTTAATGGCTACTAGTAGCAAACCTG
388 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
* *
17411309 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
17411374 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCCCGATC
* * * ** **
17411439 GCCGGGACCCCAATGCCACCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAG
582 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
** * ** *
17411504 AAAAATGCGGCACCAGCACATGGTCAAGCTTAGCATGTGTTGCCGCAA-CC--C--T-C-G---G
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAGTCCG
* *
17411559 -TC-----C----AAT---C-T-G-AT-CTTAGACTGGGAATGAACTCTGTATGCCGAAGTCAAC
712 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * * * *** *
17411607 CCATGAAACAAGCGTGTGGGCACTCAACTGG--GGATGGGCCGGGT-CCCCCTCTGCGTGTTG-T
777 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC--CG-G-GGAT
* * ** * * * *** * * * *
17411668 CGATCGTGCTGCAGCAACCCTCGGTTTGGT-CTGATCTTAGACTGGGA-ATGA-ACTCTGTATGC
838 CGATCG-GGT-C--C--CCCTCTGCGTGCTGCCGATCCT--ACTCCTACA--ACCCTCAGTCTGG
* *
17411730 CT-AAG
893 TTCAAT
* *** * * * *
17411735 C-TA-AC--CGAA-GAAACTAGCGGGCGGGCCGGCACTACGCCGACC-A-GAGA-GA-CGGGATG
1 CTTAGACTGGGAATG-AACT--C---C--GTATGC-CTAAGCCAACCGACGAAACGAGCGGGAGG
* ** ** * * * ** * * *** ** *
17411791 CG-CAAGC-C-A--T-GG--ATCGATA-GGG-TG-GTAGGTTA-GTTTA-GGCACATCTTCATAT
57 GGCCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG--ACGTGGATCG-ATAGGGTGGTAG
* ** * * * * * ** * *** *** *
17411843 TTCAGTGTA-CCA-ATGC--CATTTTTATGGCTTGTAAAT-TCA-TACAAT-G---GTCCCTTGA
119 GTGGGTTTAGGCACAT-CTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * ** * *
17411898 -GC-CT--TCAT------------GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT
182 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
17411947 AATTTTTGAAACTTTCTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
247 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * **
17412012 ACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCCCAAAAAAATTCAGCTAAAAACTGGAA
312 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
* * * * *
17412077 GTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATTGCTACTGG
377 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
* *
17412142 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGGGAGTTCTCAAGGTTTGATGAGGGA
442 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
17412206 TAGGGGGCCAACATAAAGGCCAAGTACCAGCACCCATCACACATCATGTG-CCACACCCCCCGGG
507 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGC
** ** * * * * **
17412270 CCCCCCGATCGTTGGAACCTTAATGTCGTCGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTGC
572 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
** * * *
17412335 CCCGGTGAAGAAAAATGCGGCAACGGCACATGCCCGAGCCCATCATGTGCTGCCGCAA-CC--C-
637 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCG
17412396 -T-CAGTCC-A--TT---C------TG-A--TC-T-T-C--A-ACTGGGAATGAACTCCGTAT--
702 GTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** **
17412436 C-AA--C-A--CATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGC-GCGATGCGTAAAT
767 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCACAAGC
* * * * * * * * * *
17412494 CAGGGATCGGTCGGGTCCACCTCTACATGCTGCCGATCCTGCTACC-GCAATCATCAGTCCGG-T
831 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CCTACAACCCTCAGTCTGGTT
* *
17412557 CTGAC
895 C-AAT
* ** ** *
17412562 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTAACGAATTGAGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GAG-GGGC---
* * ** * * * *
17412627 TGGGTACTACACCGGTCAGAGAGACGGGATGCGCAAGCCATCGATCGATAGGGTGGTAGGTGGGT
60 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17412692 TTAGGTACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGG
125 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17412757 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCG
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
17412822 AAACATTTTGGGGTTCGTGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTA
255 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
17412887 GAAGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAATACTCGAAGTGTACAA
320 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
17412951 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* *
17413016 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * **
17413081 GAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCACCCCCCCGGCCCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCCGGCC--CCC-
* * *
17413146 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG----G-CGATGGTGCCCTG
576 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * ** * *
17413200 GCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCATAGCCC-TCGGTCT
641 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCC
* * * * *
17413264 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCTGTATGCCTAA
706 AGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
17413329 GTCAACGCACGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGGCGGGATGCACAAGTCAGGG
771 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGG
* * * * * * * * *
17413394 ATTGGGT-GGGTCCCCTTTTGCGTGCTACCGATCCTGCTACC-GCAACCCT-TGATCTGG-TAAG
836 A-TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CCTACAACCCTCAG-TCTGGTTCA-
17413455 AT
897 AT
* * * *
17413457 CTTTGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------------GCGGG
* * * *
17413522 CGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGG
54 -AGG-GG-C---CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGG
*
17413587 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAA
113 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
17413652 TTCCA-ACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTT
178 TT-CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * ** * *
17413716 TTCATGATTTTTAAAACTTTTTATGGTTCGGGAGTTTTTAAAATTTTTT-GGAAGGAGTTTTGGC
242 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
17413780 CCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
307 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17413845 TCAAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
372 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
* * * * *
17413910 ATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCAATGTTTGGTG
437 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * **
17413975 AGGGATAGGGAGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACACCCC
502 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC
* * * * * * * * **
17414040 CCGGCCCCTCCGATCGTCGAAACCCTAATGCCACCGATCAGGTTCTCCGGCGATACTCCGGTGAT
567 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * * *
17414105 GGTGCCCATG-CGAAGAAAAAAGTGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
632 GGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* ** * ***
17414169 CC-TCAGTCTGGTCCAATCTTAGACTGGGAATGAAGGCCGTATGCTTAGACTGGGAATGAACTCC
696 CCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
17414233 GCT-TGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACCGGCCATAGGGGCGGGATGC
761 G-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * ** * * * * *
17414297 GCAAGCCGGGGATCGGTCGGGTCCCCTTCTATGTGTTGCCGATCCTGCTACC-GCAACCTTCGGT
825 ACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-CCTACAACCCTCAGT
*
17414361 -TCGG-TCGGAT
889 CT-GGTTC-AAT
* * *
17414371 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGG--GCCGGG
** * * * **
17414436 CACTACACCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTTGGTCAGTTTAG
64 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17414501 GCACA
129 GCACA
17414506 ACTCGAGAAT
Statistics
Matches: 7930, Mismatches: 1320, Indels: 1134
0.76 0.13 0.11
Matches are distributed among these distances:
808 1 0.00
809 75 0.01
810 8 0.00
812 1 0.00
813 1 0.00
814 3 0.00
815 3 0.00
816 1 0.00
817 18 0.00
818 8 0.00
819 3 0.00
820 6 0.00
821 24 0.00
822 30 0.00
823 33 0.00
824 61 0.01
825 24 0.00
826 27 0.00
827 28 0.00
828 21 0.00
829 13 0.00
830 5 0.00
831 23 0.00
832 13 0.00
833 32 0.00
834 3 0.00
835 13 0.00
836 3 0.00
837 8 0.00
838 3 0.00
839 6 0.00
840 7 0.00
841 138 0.02
842 14 0.00
843 102 0.01
844 268 0.03
845 15 0.00
846 13 0.00
847 16 0.00
848 18 0.00
849 8 0.00
850 18 0.00
851 10 0.00
852 15 0.00
853 25 0.00
854 28 0.00
855 25 0.00
856 16 0.00
857 9 0.00
858 15 0.00
859 8 0.00
860 19 0.00
861 68 0.01
862 7 0.00
863 6 0.00
864 20 0.00
865 17 0.00
866 138 0.02
867 217 0.03
868 30 0.00
869 12 0.00
870 4 0.00
871 13 0.00
872 46 0.01
873 102 0.01
874 255 0.03
875 294 0.04
876 12 0.00
877 8 0.00
878 186 0.02
879 16 0.00
880 64 0.01
881 612 0.08
882 91 0.01
883 26 0.00
884 60 0.01
885 153 0.02
886 125 0.02
887 50 0.01
888 67 0.01
889 21 0.00
890 32 0.00
891 211 0.03
892 225 0.03
893 105 0.01
894 6 0.00
895 136 0.02
896 224 0.03
897 29 0.00
898 452 0.06
899 779 0.10
900 239 0.03
901 7 0.00
902 169 0.02
903 263 0.03
904 274 0.03
905 21 0.00
906 66 0.01
907 412 0.05
908 2 0.00
909 1 0.00
913 6 0.00
914 262 0.03
915 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGGCCGGGCA
CTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGCCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCCAGTCCGATCT
TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTCCTACAACCCTCAGTCTGGTTCAAT
Found at i:17407635 original size:26 final size:26
Alignment explanation
Indices: 17407605--17407661 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17407595 GACGACTTGT
** *
17407605 TTTTTATTTTTCACGATTTTTGAAAC
1 TTTTTATGGTTCACGATTTTTGAAAA
*
17407631 TTTTTGTGGTTCACGATTTTTGAAAA
1 TTTTTATGGTTCACGATTTTTGAAAA
17407657 TTTTT
1 TTTTT
17407662 TCGGAAGGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (26 bp):
TTTTTATGGTTCACGATTTTTGAAAA
Found at i:17408038 original size:25 final size:26
Alignment explanation
Indices: 17408010--17408061 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17408000 CCGGTCTGCT
*
17408010 CTTAGACTGGGAAT-CACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17408035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17408061 C
1 C
17408062 CTATGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17408922 original size:26 final size:26
Alignment explanation
Indices: 17408893--17408945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17408883 CCGGTCTGAT
*
17408893 CTTAGACT-GGAATTGAACTCCGTATG
1 CTTAGACTGGGAA-TGAACTCCATATG
17408919 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17408945 C
1 C
17408946 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17410706 original size:26 final size:26
Alignment explanation
Indices: 17410670--17410722 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17410660 CGGGTCTGAT
17410670 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17410696 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17410722 C
1 C
17410723 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17413514 original size:4 final size:4
Alignment explanation
Indices: 17413505--17413538 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
17413495 GATGAAACGA
*
17413505 GCGG GCGG GCGG GCGG GCGG GCGG ACGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
17413539 ACTACGTCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.03, C:0.26, G:0.71, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:17415351 original size:26 final size:26
Alignment explanation
Indices: 17415300--17415352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17415290 CCGGTCCGAT
**
17415300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
17415326 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
17415352 C
1 C
17415353 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:17416218 original size:26 final size:26
Alignment explanation
Indices: 17416189--17416241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17416179 CTGGTCCGAT
*
17416189 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17416215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17416241 C
1 C
17416242 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17416411 original size:26 final size:26
Alignment explanation
Indices: 17416374--17416426 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17416364 CCTGTCTGAT
*
17416374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17416400 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17416426 C
1 C
17416427 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17417952 original size:26 final size:26
Alignment explanation
Indices: 17417916--17417971 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17417906 CCGGTCTGAT
*
17417916 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
17417942 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
17417968 CTTA
1 CTTA
17417972 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17418850 original size:26 final size:26
Alignment explanation
Indices: 17418821--17418873 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17418811 CCGGTCTGAT
17418821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17418847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17418873 C
1 C
17418874 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17419750 original size:26 final size:26
Alignment explanation
Indices: 17419714--17419766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17419704 CTGGTCCAAT
* *
17419714 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17419740 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17419766 C
1 C
17419767 CAAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17419906 original size:893 final size:895
Alignment explanation
Indices: 17417869--17419950 Score: 2837
Period size: 893 Copynumber: 2.3 Consensus size: 895
17417859 TAGCAGAAAA
* * *
17417869 ATGCCTGAGCCCAGCATGTGCTAC-CAAAACCCTCGGTCCGGTCTGATCTTAGTCTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCGC--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* ** * *
17417933 C-TCTATATGCTTAGACTGGGAATGAACTTTGTATGCTTAAGTCAACCCACAAAACGAACGTGCG
64 CTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCG
* ** *
17417997 GGCGCTCAGCTGGCCAGAGGGTTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCT-TCGCGT
128 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCT-GCGT
* * * * * *
17418061 GCTGTCGATCCTACTGCCCCAGCCCTCGGTCT-GATCCCATCTTAGACTGGGAATGAACTCTGTA
192 GCTG-CGATCCTGCTGCCACAACCCTCAGTCTAG-TTCGATCTTAGACTGGGAATGAACTCTGTA
* *
17418125 TGCCTAAGCCAACCGACGAAATGAGTGAGCAGGCAGGCGGGCGGGCACTACCCCGGCCAGAGAGA
255 TGCCTAAGCCAACCGATG-AA--A-CGAGC--G--GGCGGGCGGGCACTACCCCGGCCAGAGAGA
* * *
17418190 TGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
312 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
17418255 GTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAATT
377 GTGCCAATGCCATTTCTATGGCTTCTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAATT
** * * * *
17418320 TCATGGCAAGACGACTGGTTTTCTATTTTTCACGATTTTTAAAACTTTTTTCGGTTCGAGATTTT
442 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTT
17418385 TTTAAATTTTTTCAGAAGGAGTTTAGGCCCCAAACTCGGCAGACACGATCCTTGTATTTTTGTTG
507 TTTAAATTTTTTCAGAAGGAGTTTAGGCCCCAAACTCGGCAGACACGATCCTTGTATTTTTGTTG
** * * *
17418450 GCATGCACAAAAAAATTGTGCTAAAAAACTCAAAGTTTACAAGATTTTGTGGCCATTTGAACAAA
572 GCATGCACAAAAAAATTCAGCTAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
17418515 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTT
637 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTT
* * *
17418580 ATTGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGC
702 ATGGGGGTGCGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
17418645 ACCCATCGCACATCATCTGCGCACACGCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGTCGCC
767 AACCATCGCACATCATCTGCCCACACCCCCCCGGCCCCCCCAATCGTCGAAACCCCAATGTCGCC
* *
17418710 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAATGAAGAAAAATGCGGCACCAGCAC
832 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCAC
*
17418774 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGC-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
17418839 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGG
65 TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
* * * * *
17418904 CGCTCAGCCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCGGCTGGGTCCCCCTCTGTGTGCT
130 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * *
17418969 GCCGATCCTGCTGCCACAACCCTCTA-TCCAG-TCTGATCTTAGACTAGGAATGAGCTCTGTATG
195 G-CGATCCTGCTGCCACAACCCTC-AGTCTAGTTC-GATCTTAGACTGGGAATGAACTCTGTATG
* **
17419032 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGC
257 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGC
* *
17419097 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
322 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
17419162 CATTTCTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
387 CATTTCTATGGCTTCTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAATTTCATGGCAAG
* * *
17419227 ACGACTCATTTTCTATTTTTCATGATTTTCGAACCTTTTTGCAGTTCAAGA-TTTTTTAAGATTT
452 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTTAA-ATTT
* * * * ** *** *
17419291 GTTT-TGAAGGATTTTTGGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGGA-
516 -TTTCAGAAGGAGTTTAGGCCCCAAACTCGGCAGACACGATCCTTGTATTTTTGTTGGCATGCAC
*
17419354 AAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
580 AAAAAAATTCAGCTAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17419418 ATTAT-AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGA-GGGG
645 ATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTT-ATGGGG
17419481 GTGCGAGTTCTCAAGGTTTGATGATGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCA
708 GTGCGAGTTCTCAAGGTTTGATGA-GGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCA
* * *
17419545 TCGTACATTATGTGCCCACACCCCCCCGG-CCCCCCAATCGTCGAAACCCCAATGTCGCCGGTCA
772 TCGCACATCATCTGCCCACACCCCCCCGGCCCCCCCAATCGTCGAAACCCCAATGTCGCCGGTCA
** * *
17419609 GGTTCTCCGAC-ATTTTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
837 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCAC
* * ** *
17419667 ATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAGGAAC
1 ATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
17419732 TTCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCAAAGTTAACCCACGAAACGAGCATGCGTG
65 TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
* *
17419797 CGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
130 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * * *
17419862 GCGGATCCTGCTACCGCAACCCTCAGTTTAGTTCGATCTTAGACTGGGAATGAACTGC-ATATGC
195 GC-GATCCTGCTGCCACAACCCTCAGTCTAGTTCGATCTTAGACTGGGAATGAACT-CTGTATGC
* *
17419926 TTAAGCCAACTGATGAAACGAGCGG
258 CTAAGCCAACCGATGAAACGAGCGG
17419951 TAGGGTGGTA
Statistics
Matches: 1038, Mismatches: 122, Indels: 46
0.86 0.10 0.04
Matches are distributed among these distances:
892 2 0.00
893 283 0.27
894 48 0.05
895 183 0.18
896 24 0.02
897 252 0.24
898 3 0.00
899 1 0.00
901 4 0.00
902 1 0.00
904 3 0.00
905 230 0.22
906 3 0.00
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
ATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
CGATCCTGCTGCCACAACCCTCAGTCTAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTA
AGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TCTATGGCTTCTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAATTTCATGGCAAGACGA
CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTTAAATTTTTTCA
GAAGGAGTTTAGGCCCCAAACTCGGCAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTATGGGGGTGCGAGT
TCTCAAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATC
ATCTGCCCACACCCCCCCGGCCCCCCCAATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCG
ACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCAC
Found at i:17420585 original size:26 final size:26
Alignment explanation
Indices: 17420556--17420608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17420546 CTGATCCGAT
* *
17420556 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17420582 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17420608 C
1 C
17420609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:17421964 original size:893 final size:893
Alignment explanation
Indices: 17419951--17422291 Score: 3433
Period size: 893 Copynumber: 2.6 Consensus size: 893
17419941 AAACGAGCGG
* *
17419951 TAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTC
1 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT-
* * * *
17420016 TTAAATTCATATAGTGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAGGACGACTCGTTTTCT
65 TTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** ** * *
17420081 ATTTTTCACAATTTTCCAAACTTTTTGTGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
130 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * **
17420146 TGGTCCCAAACTTGGTAGACGTGATCCATT-TATTTTTGTTGGAATAAACAAA-ACAATTCAGCT
195 TGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCATGCACAAACA-AATTCAGCT
* * *
17420209 AAGAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTTAAACACTTTA
258 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTA
*
17420274 ATGGCTACCAGG-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
323 ATGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
17420338 TTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCT-
387 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TG
* * * * *
17420401 CACACCCCCCCGGCCCTCTCGATC-TCCGGAACCCCGATGCCACCGATCAGGTTCTCCGACGATG
451 CACACCCCCCC-GCCCCCTCGATCGT-CGGAACCCCAAT-CCGCCGGTCAGGTTCTCCGGCGATG
* * * *
17420465 CTCCGACGATGGTGCCTCGACAAAGACAAATGCGGTACTAGCACATGCCCGAGCCCAGCATTTGC
513 CTCCG-TGATGGTGCCCCGACAAAGACAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGC
* * *
17420530 GATCACAACCCTCCGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGCGAA
577 GACCACAACCCTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAA
* * * * * * * * *
17420595 TGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGTGCTTAGCTGGCCAGAGGGGT
642 TGAACTCCATATACCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGAT
* * * * * * *
17420660 GGGATGCACAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACCGATCCTGTTGCTGCAACC
707 GGGATGCACAAGCCGGGGATCGACCGGGTCCCCTTCTACATGCTACCGAGCCTGCTACCGCAACC
*
17420725 TATAGTATGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
772 TACAGTATGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
* * * * * *
17420790 CGGGCGGACGGGCGGTCACTACGCCGGCTAGAGAGACAGGATACGCAAGCTGTGGATCGA
836 --GGAGGACGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACGCAAGCCGTGAAACGA
* *
17420850 TAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTCTATGGCTT
1 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC-T
* *
17420915 TTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCT
65 TTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
17420980 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
130 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
17421045 TTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAA
195 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAA
*
17421110 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
260 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAAT
*
17421175 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTT
325 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
17421240 GATGAGAGATA-GGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAGA
390 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA
* * * *
17421304 CCCCCCCGCCCCCCCAATCGTCGAAACCCCAATCTCGCCGGTCAGGTTCTCCGGCGATGCACCAG
455 CCCCCCCGCCCCCTCGATCGTCGGAACCCCAATC-CGCCGGTCAGGTTCTCCGGCGATGCTCC-G
** ** * *
17421369 TGATGGTGCCCCGATGAAGACAAATGCGGCACTAGCACATGCTTGAGCCCAGCATGTGCTACCGC
518 TGATGGTGCCCCGACAAAGACAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCGACCAC
* *
17421434 AACCCTCTGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
583 AACCCTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACT
17421499 CCATATACCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGA-GGATGGGATG
648 CCATATACCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGATGGGATG
* * * * * *
17421563 CGCAAGTCGGGGATCGACCGAGTTCCCC-TCTACATGCTGCCGAGCCTGCTACCGCAACCTCCGG
713 CACAAGCCGGGGATCGACCG-GGTCCCCTTCTACATGCTACCGAGCCTGCTACCGCAACCTACAG
* *
17421627 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GAGGA
777 TATGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGAGGA
* * * * *
17421691 TGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGAAACGA
842 CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACGCAAGCCGTGAAACGA
*
17421743 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
1 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
17421808 GTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCT
66 -TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
17421873 ATTTTTCATGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTT
130 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
17421938 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAA
195 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAA
* * *
17422003 AAACTCGAAGTGTACAAGGTTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
260 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAAT
*
17422068 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
325 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
17422133 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACA
390 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA
* * * *
17422198 CCCCCCGGCCACCTCGATCGCCGGAACCCCAATCCCGCCGGTCAGGTTCTCCGGCGATGGTCCGG
455 CCCCCCCGCCCCCTCGATCGTCGGAACCCCAAT-CCGCCGGTCAGGTTCTCCGGCGATGCTCC-G
* * *
17422263 TGATGGTGACCCGGCAAAGAAAAATGCGG
518 TGATGGTGCCCCGACAAAGACAAATGCGG
17422292 GCGGGCGGCC
Statistics
Matches: 1299, Mismatches: 130, Indels: 31
0.89 0.09 0.02
Matches are distributed among these distances:
892 2 0.00
893 424 0.33
894 127 0.10
895 1 0.00
897 110 0.08
898 231 0.18
899 402 0.31
900 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (893 bp):
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAC
CCCCCCGCCCCCTCGATCGTCGGAACCCCAATCCGCCGGTCAGGTTCTCCGGCGATGCTCCGTGA
TGGTGCCCCGACAAAGACAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCGACCACAAC
CCTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCA
TATACCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGATGGGATGCAC
AAGCCGGGGATCGACCGGGTCCCCTTCTACATGCTACCGAGCCTGCTACCGCAACCTACAGTATG
GTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGAGGACGGG
CGGGCACTACGCCGGCCAGAGAGACAGGATACGCAAGCCGTGAAACGA
Found at i:17422850 original size:606 final size:606
Alignment explanation
Indices: 17421698--17422897 Score: 1915
Period size: 606 Copynumber: 2.0 Consensus size: 606
17421688 GGATGGGCGG
*
17421698 GCACTATGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGAAACGATAGGGTGGTAGGTGGGTTTA
1 GCACTATGCCGGCCAGAGAGACGGGATGCGGAAGCCGTGAAACGATAGGGTGGTAGGTGGGTTTA
* * *
17421763 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCC
66 GGCACATCTTCATATTTCTACACGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGATCC
** **
17421828 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCACAATTTTCCAAA
* *
17421893 CATTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
196 CATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAATTTTGGCCCCAAACTTGGTAGAC
* *
17421958 GTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGGT
261 GTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* **
17422023 TTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTG
326 TTTACGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACAGGCAGCAAACCTG
17422088 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
391 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
17422153 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCACCTCGATCG
456 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCACCTCGATCG
* * ** *
17422218 CCGGAACCCCAATCCCGCCGGTCAGGTTCTCCGGCGATGGTCCGGTGATGGTGACCCGGCAAAGA
521 CCGAAACCCCAATCCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGACCCGACAAAGA
17422283 AAAATGCGGGCGGGCGGCCGA
586 AAAATGCGGGCGGGCGGCCGA
* * * * *
17422304 GCACTATGCCTGCCAGAGAGATGGGATGCGGAAGCTGTGGAGCGATAGGGTGGTAGGTGGGTTTA
1 GCACTATGCCGGCCAGAGAGACGGGATGCGGAAGCCGTGAAACGATAGGGTGGTAGGTGGGTTTA
* * *
17422369 GGCACCTCTTCATATTTCTACGCGCCAATGCCATTTTTATGGCTCT-TAAATTCATACAATGATC
66 GGCACATCTTCATATTTCTACACGCCAATGCCATTTTTATGGCT-TGTAAATTCACACAATGATC
* *
17422433 CCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACAATTTTCCAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCACAATTTTCCAA
* * *
17422498 ACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGTCCCAAACTTGGTAGA
195 ACATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAATTTTGGCCCCAAACTTGGTAGA
17422563 CGTGATCCATT-TATTTTTGTTGGCATGCACAAA-ACAATTCAGCTAAAAACTCAAAGTGTACAA
260 CGTGATCC-TTGTATTTTTGTTGGCATGCACAAACA-AATTCAGCTAAAAACTCAAAGTGTACAA
* *
17422626 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTCATGGCTACCAGG-AGCAAA
323 GATTTTACGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA-CAGGCAGCAAA
17422690 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
387 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
17422755 CCAATATAAGGG-CAAGTACCAGCAGCCATCGCACATCATGTGCTCACACCCCCCCGGCCCCCTC
452 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACA-CCCCCCGGCCACCTC
* * * * *
17422819 GATCTCTGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAT
516 GATCGCCGAAACCCCAATCCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGACCCGAC
*
17422884 AAAGATAAATGCGG
581 AAAGAAAAATGCGG
17422898 CACCAGCACA
Statistics
Matches: 544, Mismatches: 45, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
605 34 0.06
606 505 0.93
607 5 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (606 bp):
GCACTATGCCGGCCAGAGAGACGGGATGCGGAAGCCGTGAAACGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACACGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGATCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCACAATTTTCCAAA
CATTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAATTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
TTTACGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACAGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCACCTCGATCG
CCGAAACCCCAATCCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGACCCGACAAAGA
AAAATGCGGGCGGGCGGCCGA
Found at i:17424227 original size:902 final size:877
Alignment explanation
Indices: 17422291--17425644 Score: 3625
Period size: 899 Copynumber: 3.8 Consensus size: 877
17422281 GAAAAATGCG
* * * * * *
17422291 GGCGGGCGGCCGAGCACTATGCCTGCCAGAGAGATGGGATGCGGAAGCTGTGGAGCGATAGGGTG
1 GGCGGGCGGGCG-GCACTACGCC-GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTG
* *
17422356 GTAGGTGGGTTTAGGCACCTCTTCATATTTCTACGCGCCAATGCCATTTTTATGGCTCT-TAAAT
64 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT-TGTAAAT
* *
17422420 TCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTT
128 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
17422485 CACAATTTTCCAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGTCC
193 CACGATTTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCC
17422550 CAAACTTGGTAGACGTGATCCATT-TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
258 CAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
* * *
17422614 CAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTCATGGCTA
322 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17422679 CCAGG-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
387 -CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
17422743 AGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCAGCCATCGCACATCATGTGCTCACACCCC
451 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC
* * * * *
17422807 CCCGGCCCCCTCGATCTCTGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA
514 CCCGGGCCCCTCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGAC-ATGCT-CGGCGA
* * * *
17422872 TGGTGCCCCGATAAAGATAAATGCGGCACCAGCACATGCCCAAGCCCAGCATTTGC-GATCACAA
577 TGGTGCCCCGAGAAAGAAAAATGCGGCACCAGCA-ATGCTC-AGCCCAGCA--TGCTG--CGCAA
* * **
17422936 CCAT-TGGTCCAATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTC
636 CCCTCGGGTCC-ATCCGATCTTAGACTGGGAATGAACTCCGT-TGCTTAGACTGGGAAT--ACTC
* * * * * *
17423000 -TGTTTGCCTAAGTCAAATCATGAAACGAGCGTACGGGCGCTTAGCTGGCCAGAGGGGCAGGATG
697 ATG-TAGCCTAAGTC-AA-CA-CAAACGAGCG-ACGGGCACTCAACCGGCCAGAGGGGCAGGATG
* * *
17423064 CACAAGCCGGGGATCGATCGGGTCCCCCTATGCGTGCTACCAATCCTGTTGCTGCAACCCTCGGT
757 CGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCAATCCTGTTGCTGCAACCCTCGG-
* * * * *
17423129 TTGCT-CTGATCTTAGAATAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA
820 TCGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* ** **
17423187 GTGGGTGGACGGGCGGTCACTACGCCGATTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
1 G-GCG-GG-CGGGCGG-CACTACGCCG-CCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGG
*
17423252 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGGCTTGTAA
61 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
* *
17423317 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTT
126 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * ** * * * *
17423382 TTCATGATTTTCGAAACATTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGC
191 TTCACGATTTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGC
* *
17423447 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAACAAATTCTGCTAAAAA
256 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC-AATTCAGCTAAAAA
17423511 CTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATTG
320 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAA-TG
* *
17423574 GCTTACTGGCTAGCAAACCTGTAAAGAACTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGT
383 GC-TACTGGC-AGCAAACCTGTAAA-ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** *
17423639 TGTGATGAGGGAGTTAGGGCGGCCAATATAA-GGAAAAGTACCAGGCACCCATCGGACATTCATG
445 T-TGATGAGGGA--TAGGG-GGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACA-TCATG
* * * * * * *
17423703 GGCGCGCACCCCCGGGCACCTGCGACCGGCCGGAACCTCCAATGCCGCGGGTTAGGTTCT-CGAC
504 TGCGCACACCCCCGGGCCCCT-CGATC-GCCGAAACC-CCAATGCCGCCGGTCAGGTTCTCCGAC
* * * *
17423767 ATGGCTCGGTGATGGATGACCTGACGAACAGAAAAATGCGACACCAGCAAATGCTCGAGCCCAGC
566 AT-GCTCGGCGATGG-TGCCCCGA-GAA-AGAAAAATGCGGCACCAGC-AATGCTC-AGCCCAGC
* * *
17423832 AGTGCTGCCGCAACCCTCGGCGTCCAGCCTGATATTAGACTAGG-ATGAACTCCGTTGGCTTAGA
625 A-TGCTG-CGCAACCCTCGG-GTCCATCC-GATCTTAGACTGGGAATGAACTCCGTT-GCTTAGA
** * *
17423896 CTGGGAATACTCATGTAGCCTAAGTCAACCCACAAAACG-GCGGGGGGCACTCAATCGGCCAGTG
685 CTGGGAATACTCATGTAGCCTAAGTCAA--CAC-AAACGAGCGACGGGCACTCAACCGGCCAGAG
* * ** * * * * * *
17423960 GGGCGGGATGCGTAAGTTGGGGACCGGCTGGGTCCCCCTCTGCCTGCTGCCGATCCTGCTGCTAC
747 GGGCAGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGTTGCTGC
* * *
17424025 AACCCTCGATCCGGTCCTATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
811 AACCCTCGGT-CGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
17424090 CGA
875 CGA
* * * *
17424093 -ACGGGCGGGCTGGCACTGCGCCAGCCAAAGAGACGGGATGCGTAAGCCGTGAATCGATAGGGTG
1 GGCGGGCGGGC-GGCACTACGCC-GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTG
* *
17424157 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
64 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17424222 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTT-TTTTTTTC
129 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
17424286 ACGATTTTCCAATCTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTTGAAAGGACTTTTGGCCCC
194 ACGATTTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCCC
* * *
17424350 AAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTTG
259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAC-TC
*
17424415 AAA-TGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
323 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
17424479 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
388 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
17424544 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCT
453 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* * * * ** *
17424609 CGGCCCCTCCGATCGTCGAAACCCCAATGCCGCCGATCAGCTTCTCCGGTGATGCTCTGGCGACG
517 GGGCCCCT-CGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCC-GACATGCTC-GGCGATG
*
17424674 GTGCCCCGATG-AAGAAAAATGTGGCACCAGC-ATG-T-------GC-TGCT--GCAA-CCTGCG
579 GTGCCCCGA-GAAAGAAAAATGCGGCACCAGCAATGCTCAGCCCAGCATGCTGCGCAACCCT-CG
* ** * * * * *
17424725 GTTTGATCCGCTCTTAGACTGGGAATGAACTTCG-T-ATT--CCT----A-AGTCA---A-CC-A
642 GGTCCATCCGATCTTAGACTGGGAATGAACTCCGTTGCTTAGACTGGGAATACTCATGTAGCCTA
* * * ** * *
17424776 A--CGAA-AC-AA-GTGC-CCGGGCACTCAACCGGCCTGAGGGGCAAAATGCGCAAGCCAGTGAT
707 AGTC-AACACAAACGAGCGACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* ** * * * * **
17424835 CAGTCGGGTCCTCCTCTGCGTATTGTCAATCTTGTTGCCGGAACCCTCGGTCGATCAAATCTTAG
771 C-GTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGTTGCTGCAACCCTCGGTCGATCCTATCTTAG
* *
17424900 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGCGA
835 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-CGA
* * *
17424947 GCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCACAGAGACGGGATGCGTAAGCCGTGGATCAA
1 -------GGCGGGCGGGC-GGCACTACGC-CGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGA
*
17425012 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGGCATTTTTATGGCTT
57 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* *
17425077 GAAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
122 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * *
17425142 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGATGGACTTT
187 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGACTTT
* * *
17425207 TGGCCCCAAAGTTGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAA-AACTTCAGCTA
252 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA-TTCAGCTA
* * * * * * *
17425271 AAAACTCAAAGTCTATAAGATTTTGGGACCATTTGAAGAAATTGTCCACATTTCAGACATTTTAA
316 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
17425336 TGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCAAGGTT
381 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
17425401 TGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCAC
446 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * **
17425466 ACCCCCCGGCCCCCCAACCGACGGAACCCCAATGCCATCGGTCAGGTTCT----CA-----GGCG
511 ACCCCCGGGCCCCTCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACATGCTCGGCG
*
17425522 ATGGTGCCCCGACG-AAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCA
576 ATGGTGCCCCGA-GAAAGAAAAATGCGGCACCAGCA-ATGCTC-AGCCCAGCA--TGCTG-CGCA
** * * ** *
17425586 ACTGT-TGGTCCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
635 ACCCTCGGGTCC-ATCCGATCTTAGACTGGGAATGAACTCCGT-TGCTTAGACTGGGAAT
17425645 GAACTCCGTC
Statistics
Matches: 2084, Mismatches: 272, Indels: 222
0.81 0.11 0.09
Matches are distributed among these distances:
850 45 0.02
851 106 0.05
852 6 0.00
853 4 0.00
854 6 0.00
856 1 0.00
857 3 0.00
858 2 0.00
859 2 0.00
860 1 0.00
862 201 0.10
863 46 0.02
864 264 0.13
865 4 0.00
867 2 0.00
868 31 0.01
869 1 0.00
870 3 0.00
871 2 0.00
872 12 0.01
873 18 0.01
874 7 0.00
877 5 0.00
879 2 0.00
887 1 0.00
888 3 0.00
890 17 0.01
891 19 0.01
892 34 0.02
893 43 0.02
894 15 0.01
896 11 0.01
897 41 0.02
898 76 0.04
899 289 0.14
900 94 0.05
901 96 0.05
902 203 0.10
903 15 0.01
904 1 0.00
905 9 0.00
906 150 0.07
907 32 0.02
908 49 0.02
909 35 0.02
910 60 0.03
911 17 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (877 bp):
GGCGGGCGGGCGGCACTACGCCGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTCCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGGC
CCCTCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACATGCTCGGCGATGGTGCCCC
GAGAAAGAAAAATGCGGCACCAGCAATGCTCAGCCCAGCATGCTGCGCAACCCTCGGGTCCATCC
GATCTTAGACTGGGAATGAACTCCGTTGCTTAGACTGGGAATACTCATGTAGCCTAAGTCAACAC
AAACGAGCGACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGTCGGGTCC
CCCTCTGCGTGCTGCCAATCCTGTTGCTGCAACCCTCGGTCGATCCTATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:17425947 original size:26 final size:26
Alignment explanation
Indices: 17425918--17425970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17425908 CCAGTCCGAT
*
17425918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
17425944 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17425970 C
1 C
17425971 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17427497 original size:863 final size:861
Alignment explanation
Indices: 17425663--17428438 Score: 3125
Period size: 893 Copynumber: 3.1 Consensus size: 861
17425653 TCTGCCTAAG
* * * *
17425663 TCAAATGCTCTTTAAGGGGTTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCAAGTTTGATGAGGGATAGGGGGCCAATATAAGG
** * * * **
17425728 GCCAAGTACCAAAACCCATTGTACATCATGTGCGCACACCCCCTCCCGG-CCCCTCGATCATCGA
65 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCCGGCCCCCCCGATCGCCGA
* * * * * * *
17425792 AACTCAAAT-CCTGCC-GATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAA
127 AACCCCAATGTC-GCCAG-TCAAGTTCTCCGGCGATGCT-CGAC------GCTCCGACGAACAAA
* * ** * * * *
17425855 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAGTCCGATCT
183 AATGTGACACCAGCACATGCCAAAGCCCAGCATGTGCTACCGCAACCCTCGATCC-G-ACGATC-
*
17425920 TAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
245 ---AC--GGAAT--ACT---TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
17425985 GAAACGAGAGTACGGGCGCTCAACTGACCAGAGGGGCTGGATGCGCAAGCCGGGGATCGATCGGG
294 GAAACAAGA-TGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-GACCGGG
17426050 TCTCCCGCTGCATGCTGTCGATCGTGCTG-TCGTAACCCTC-AGTCTGGTTCGATCTTAGACTGG
357 TCT-CC-CT-C-TGCTGT-GATC-TGCTGCT-GTAACCCTCGA-TCTGG-TCGATCTTAGACTGG
* * *
17426113 GAATGAATTTTGTATGCCTAAGCCAACCAACGAAACTA-------A--CGGGCTGGCACTA-CGT
413 GAATGAACTTTGTATGCCTAAGCCAACCGACGAAA-TAGCGGCGGAGGCGGGCGGGCACTAGC-T
* *
17426168 CGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCC
476 -GGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17426233 TCGTATTTCTGCATG-CCCATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCC
540 TCATATTTCT--ATGTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
17426297 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
603 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
17426362 GG-TTCGAGA-TTTTTTAAACTTTCTTCGGAA-GAAGTTTTGGGCACAAACTTGGTAGACGTGAT
668 GGTTTAG-GATTTTTTTAAA-TTTTTTCAGAAGGAA-TTTTGGCCCCAAACTTGGTAGACGTGAT
*
17426424 CCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
730 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * * *
17426489 GACCATTTGAGAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAA
795 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAA
17426554 TC
860 TC
* * * *
17426556 ACAAATGCTCTTCAAGAGGGTGTGAGTTCTCACAGTTTGATGAGGGATAGGGGGCCAATATGAGG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
17426621 GCCAAGAACCAGCACCCATCGCACA-CTATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGAAA
65 GCCAAGTACCAGCACCCATCGCACATC-ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAA
* **
17426685 TCCCAATGTCGTGAGTCAAGTTCTCCGGCGATGCT-G-C-C-CCGACGAACAAAAATGTGACACC
129 CCCCAATGTCGCCAGTCAAGTTCTCCGGCGATGCTCGACGCTCCGACGAACAAAAATGTGACACC
** * * * *
17426746 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAGCCCTCGGTCC-A-G-TC-C-G-AT-CTTAGA
194 AGCACATGCCAAAGCCCAGCATGTGCTACCGCAACCCTCGATCCGACGATCACGGAATACTTAGA
*
17426804 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGCCA
259 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG-ATGCGGGCGCTCAACCGGCCA
*
17426869 GAGGGGCGGGATGCGGAAGCCGGGGATGACCGGGTCTCCCTTTACGTGCTGTTGATCCTGCTGCT
323 GAGGGGCGGGATGCGCAAGCCGGGGATGACCGGGTCTCCC--T-C-TGCTG-TGAT-CTGCTGCT
* *
17426934 GCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGACGA
382 GTAACCCTCGATCTGGTC-GATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGA
*
17426999 AATGAGCGGGCGGATGGGCGGGCGGGCACTAGCTGGCCAGAGAGACGGGATGCGTAAGTCGTGGA
446 AAT-AGC-GGCGGA--GGCGGGCGGGCACTAGCTGGCCAGAGAGACGGGATGCGCAAGTCGTGGA
*
17427064 TTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTCCAATGCCATTTTTATG
507 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG-TCCAATGCCATTTTTATG
*
17427129 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
571 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
17427194 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTTAAATTTTTTCAGAAGGA
636 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTTAAATTTTTTCAGAAGGA
* *
17427259 ATTTT-GCCCCAAAGTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
701 ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
17427323 CTAAAAACTCAAAGTATACAAAATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTT
766 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17427388 TAATTGCTACTGACAGCAAACCTGTAAAATC
831 TAATAGCTACTGGCAGCAAACCTGTAAAATC
*
17427419 TCAAATGCTCTTTAAGGGGGTGTGAGATCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAGG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG-TTTGATGAGGGATAGGGGGCCAATATAAGG
* *
17427484 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCACCCCCCGGCCCCCCTGATCGC
65 GCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA----CACCCCCCGGCCCCCCCGATCGC
* * * *
17427549 CGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTACTCCGACGAAGAA
124 CGAAACCCCAATGTCGCCAGTCAAGTTCTCCGGCGATGCT-CGAC----G--CTCCGACGAACAA
* *
17427614 AAATGTGGCACCAGCACATGCCAAAGCCCAGCATGTGCTACTGCAACCCTCGATCCGATCCGATC
182 AAATGTGACACCAGCACATGCCAAAGCCCAGCATGTGCTACCGCAACCCTCGATCCGA--CGATC
17427679 TTAGACTGGGAATGAACTGCATATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
245 ----AC--GGAAT--ACT---TA-G---A--CTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * *
17427744 CGAAACAAGTGTGCGGGCGCTCAACCGGCCAGAAGGGCGGGATGCTTAAGCTGGGGATTGGCCTG
293 CGAAACAAG-ATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TGACCGG
* *
17427809 GTC-CCC-CT-CTG-GA--TGC--C-GTAACCCTATGTTC-GGTCTGATCTTAGACTGGGAATGA
356 GTCTCCCTCTGCTGTGATCTGCTGCTGTAACCCT-CGATCTGGTC-GATCTTAGACTGGGAATGA
* * * *
17427864 ACTTCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCGGACGGGCGGGCACTACGCCGGC
419 ACTTTGTATGCCTAAGCCAACCGACGAAA-TAGCG-GC-GGAGG-CGGGCGGGCACTA-GCTGGC
* *
17427929 CAGAGAGACGGGATGGGCAAGTCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCAT
479 CAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * * *
17427994 ATTTCTGCGTGCCAATACCGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCAC
544 ATTTCTATGT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
17428059 GTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTCGAAACTTTTTGCGGTTC
608 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* * * *
17428124 GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTAT
673 AGGATTTTTTTAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
17428189 TTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTT
738 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
*
17428254 GAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCGGCAAACCTGTAAAATC
803 GAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATC
* *
17428313 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAATG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA-GTTTGATGAGGGATAGGGGGCCAATATAAGG
*
17428378 GCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
65 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
17428439 GTACCCCGAT
Statistics
Matches: 1645, Mismatches: 151, Indels: 179
0.83 0.08 0.09
Matches are distributed among these distances:
851 1 0.00
852 5 0.00
853 83 0.05
854 87 0.05
855 1 0.00
859 1 0.00
860 2 0.00
861 1 0.00
862 5 0.00
863 231 0.14
864 197 0.12
865 30 0.02
866 3 0.00
867 1 0.00
869 54 0.03
870 1 0.00
871 1 0.00
872 1 0.00
875 2 0.00
876 1 0.00
879 1 0.00
880 119 0.07
881 2 0.00
884 1 0.00
885 2 0.00
888 25 0.02
889 1 0.00
890 5 0.00
891 44 0.03
892 84 0.05
893 305 0.19
894 236 0.14
895 4 0.00
897 2 0.00
898 2 0.00
900 5 0.00
901 2 0.00
902 1 0.00
904 1 0.00
906 87 0.05
907 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (861 bp):
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACC
CCAATGTCGCCAGTCAAGTTCTCCGGCGATGCTCGACGCTCCGACGAACAAAAATGTGACACCAG
CACATGCCAAAGCCCAGCATGTGCTACCGCAACCCTCGATCCGACGATCACGGAATACTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGATGCGGGCGCTCAACCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATGACCGGGTCTCCCTCTGCTGTGATCTGCTGCTGTAACCCTC
GATCTGGTCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAATAGCGGCG
GAGGCGGGCGGGCACTAGCTGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTATGTCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTTAGGATTTTTTTAAATTTTTTCAGAAGGAATTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCA
GCAAACCTGTAAAATC
Found at i:17427729 original size:26 final size:26
Alignment explanation
Indices: 17427678--17427730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427668 CCGATCCGAT
*
17427678 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17427704 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17427730 C
1 C
17427731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17428849 original size:159 final size:159
Alignment explanation
Indices: 17428555--17428888 Score: 402
Period size: 159 Copynumber: 2.1 Consensus size: 159
17428545 TAACCCTCTG
* * ***** * **
17428555 TATGCCTAAGTCAACCCACGAAATGAGCGTGGGAGCGCTCAGTCGGCCAGAGGGGCGGGATGTGC
1 TATGCCTAAGTCAACCCACAAAACGAGAACACGAGCGCTCAGTCGGCCAGAGGGCCGGGATGCAC
*
17428620 AAGCCGAGGATCGGCCAGGTCCCCCTCTGGGTGCTGCCGATTCTGCTATCGCAACCCTCAGTCCG
66 AAGCAGAGGATCGGCCAGGTCCCCCTCTGGGTGCTGCCGATTCTGCTATCGCAACCCTCAGTCCG
* *
17428685 ATCTGATCCTAGACTTGGAATGAACTCCA
131 ATCTGATCCTAAACTGGGAATGAACTCCA
*
17428714 TATGCCTAAGTCAACCCACAAAACGAGAACACGAGCGCTCAGTTGGCCAGAGGGCCGGGATGCAC
1 TATGCCTAAGTCAACCCACAAAACGAGAACACGAGCGCTCAGTCGGCCAGAGGGCCGGGATGCAC
* * * * * *
17428779 AAGTCAG-GGATCGGTCGGGTCCCCCTCTGTGTGCTGCC-ATTCCTGCTGTCGTAACCCTTAGTC
66 AAG-CAGAGGATCGGCCAGGTCCCCCTCTGGGTGCTGCCGATT-CTGCTATCGCAACCCTCAGTC
* * * * *
17428842 TGGTCTGATCTTAAACTGGGAATGAACTTCG
129 CGATCTGATCCTAAACTGGGAATGAACTCCA
*
17428873 TATGCCTAAGCCAACC
1 TATGCCTAAGTCAACC
17428889 GACGAAAGGA
Statistics
Matches: 147, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 3 0.02
159 142 0.97
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
TATGCCTAAGTCAACCCACAAAACGAGAACACGAGCGCTCAGTCGGCCAGAGGGCCGGGATGCAC
AAGCAGAGGATCGGCCAGGTCCCCCTCTGGGTGCTGCCGATTCTGCTATCGCAACCCTCAGTCCG
ATCTGATCCTAAACTGGGAATGAACTCCA
Found at i:17429599 original size:26 final size:26
Alignment explanation
Indices: 17429570--17429620 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17429560 TGGTCCGATC
*
17429570 TTAGATTGAGAATGAACTCCGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
* *
17429596 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGAGAATGAACTCCGTATG
17429621 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:17430770 original size:159 final size:159
Alignment explanation
Indices: 17430481--17430836 Score: 446
Period size: 159 Copynumber: 2.2 Consensus size: 159
17430471 ACTCCATATG
* * * ** *
17430481 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAGCCCACGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCATACGGGCGCTCAAC
*** *
17430546 CGGCCAGAGGGGCAGAATGCACAAGCCAGGGATCGGTCGGGTCCCCCTCCGTGAGCTGTCGATCC
66 CGGCCAGAGGGGCAGAATGCACAAGCCAGGGATCAACCGGGTCCCCCTCCGCGAGCTGTCGATCC
*
17430611 TACTAC-AACAACCCTT-GGTCCGGTCTCAT
131 TACT-CTAACAA-CCTTCGATCCGGTCTCAT
* * *
17430640 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCATACGGGCGCTCAAC
* * * * * * *
17430705 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGAATGCACAAGCCAGGGATCAACCGGGTCCCCCTCCGCGAGCTGTCGATCC
* * * *
17430770 TGCTCTCACAACCTTCGATCTGGTCTGAT
131 TACTCTAACAACCTTCGATCCGGTCTCAT
*
17430799 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
17430837 GACGAAACAA
Statistics
Matches: 168, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 5 0.03
159 163 0.97
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCATACGGGCGCTCAAC
CGGCCAGAGGGGCAGAATGCACAAGCCAGGGATCAACCGGGTCCCCCTCCGCGAGCTGTCGATCC
TACTCTAACAACCTTCGATCCGGTCTCAT
Found at i:17431547 original size:26 final size:26
Alignment explanation
Indices: 17431518--17431567 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17431508 CCGGTCTGAT
17431518 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
17431544 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
17431568 TGCCTAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:17432237 original size:26 final size:26
Alignment explanation
Indices: 17432208--17432260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17432198 CTGGTCCGAT
17432208 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17432234 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17432260 C
1 C
17432261 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17432436 original size:690 final size:690
Alignment explanation
Indices: 17430937--17433015 Score: 3144
Period size: 690 Copynumber: 3.0 Consensus size: 690
17430927 GTGTAGGCAC
*
17430937 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
17431002 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTGTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
17431067 TACGGTTCGGGA-TTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
131 TGCGGTTCGGGATTTTTTTAAA-TTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGA
* * * *
17431131 TCCTTGTATTTTTTTTGGCATGCATAAACAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTG
194 TCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
17431196 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
259 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
17431261 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATA
324 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
17431326 AGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGTACACCCTCCCTGGCCCCCCCAATCGCC
389 AGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCC-CCC-GGCCCCCCCGATCGAC
* * * **
17431391 GAAACCCC-ATGCCGCCGGTCATGTTCTCCGACGATGCTCCAACGATGGTGCCTCGATGAAGAAA
452 GGAACCCCAATGCCGCCGGTCAAGTTCT-C--C---G-----ACGATGGTGCCCCGGCGAAGAAA
* * *
17431455 AATGTGGCACCAGCACATGCTCGAGCCCAGTATTTGCTGGCGCAACCCTTGGTCCGGTCTGATCT
506 AATGCGGCACCAGCACATGCTCGAGCCCAGTATGTGCTGGCGCAACCCTTGGTCCGGTCCGATCT
* *
17431520 TAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCAC
571 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCAC
* * **
17431585 AAAACGAGCGTGTGGGCGATCAGTCGGCCAGAGAGGCGGGATGCGCAAGCCGGGG
636 AAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAAGG
* * *
17431640 ATCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTTTAAATTTATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
17431705 GCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
17431770 TGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGAT
131 TGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGAT
* * *
17431835 CCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTCT
195 CCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
17431900 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAA
260 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
17431965 TCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTG-TGAGGGATAGGGGGCCAATATAA
325 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
17432029 GGGCCAAGTACCTGCACCCATCGCGGATCATGTGCGCACACCCCCCGGCTCCCCCGATCGTCGGA
390 GGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGA
* * *
17432094 ACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
455 ACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* * *
17432159 ACATGCTCGAGCCCAGCATGTGCTGGCGCAACCCTTGGGCTGGTCCGATCTTAGACTGGGAATGA
520 ACATGCTCGAGCCCAGTATGTGCTGGCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
17432224 ACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTGAACCCACAAAACGAGTGTGTG
585 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGTG
* * *
17432289 GGCGCTCAGCCGGCCAAAGGGGCGGGATGTGCAAGCCAAGG
650 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAAGG
*
17432330 ATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * **
17432395 GCCTTCACATGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTAAAAAC-TTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * * *
17432459 TGCGGTTTGGGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAACTTAGTTGACGTGA
131 TGCGGTTCGGGATTTTTT-TAAATTTTTTCGGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGA
*
17432524 TCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
194 TCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * *
17432589 TGGCCATTTGAAAAAAGTGTCCCTATTTCGGACACTTTAATGGCTATTGGTAGCAAACCTGTAAA
259 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
17432654 ATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCACTATA
324 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
17432719 AGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCC-GCCCCCCCGATC-ACTG
389 AGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCCCCGATCGAC-G
*
17432782 GAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
453 GAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * ** * * * *
17432847 GCACATGCCCGAGCCTAGTATGTGCTATCGCAAACCTCGGTCCGGTCCAATCTTGGACTGGGAAT
518 GCACATGCTCGAGCCCAGTATGTGCTGGCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAAT
* * * *
17432912 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTG
583 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTG
* *
17432977 CGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCC
648 TGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
17433016 GGTGATCAAC
Statistics
Matches: 1256, Mismatches: 113, Indels: 27
0.90 0.08 0.02
Matches are distributed among these distances:
689 21 0.02
690 720 0.57
691 69 0.05
695 1 0.00
698 1 0.00
700 21 0.02
701 19 0.02
702 61 0.05
703 334 0.27
704 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (690 bp):
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
TGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCCCCGATCGACGGAA
CCCCAATGCCGCCGGTCAAGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
CATGCTCGAGCCCAGTATGTGCTGGCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGTGG
GCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAAGG
Found at i:17433823 original size:26 final size:26
Alignment explanation
Indices: 17433785--17433837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17433775 CTGGTTCGAT
*
17433785 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17433811 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17433837 C
1 C
17433838 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17437870 original size:26 final size:26
Alignment explanation
Indices: 17437841--17437893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17437831 CCTGTCCGAT
17437841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17437867 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17437893 C
1 C
17437894 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17438776 original size:26 final size:26
Alignment explanation
Indices: 17438740--17438791 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17438730 CCGATCCGAT
*
17438740 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17438766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17438792 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17439287 original size:904 final size:896
Alignment explanation
Indices: 17435443--17443201 Score: 9736
Period size: 891 Copynumber: 8.8 Consensus size: 896
17435433 AACGAGCGTG
* * * *
17435443 CGGG-TGCTCAAGCCGTGGATCGATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTAC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17435507 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGGCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17435572 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTT-AAACTTCTTGCGGTTCGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
** * * *
17435636 TTAAAATTTTTTCGGAAGGAGTTTTGGCCAAAAAACTTAGTGGACGTGATCCTTGTATTTTTGTT
196 TTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * * *
17435701 GACATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
17435766 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACTTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
17435831 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACAAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
17435896 ACCCATCGTACATCATGTGTGCACA--CCCCCGGTCCCCCGATCGACGAAACCCCAATGCCGTCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCG
* * * *
17435959 GTCAGG-T-T----C--T-C-C-GACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACAT
520 GTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACAT
** * **
17436013 GCCCGAGCCCAGCATGTGCTGCCGCAACTGTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTC
585 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
** * * * *
17436078 CGTATGCTTAGTTTGGGAATGAACTCCGTCTGCCTAAGTCAACCCACGAAATGAACGTACGGGCG
650 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17436143 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCT-TCACGTGCTGT
715 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCTCT-GCGTGCTGT
* * * * * * *
17436207 CGATCCTACTGCCCCAACCTTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
779 CGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
17436272 AGCCAACCGACGAAACGAGCGG-GTGGGCG-GGCACTACGCCGGCTAGAGAGA
844 AGCCAACCGACGAAACGAGCGGAGGGGGCGCGGCACTACGCCGGCCAGAGAGA
* * *
17436323 CGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17436388 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17436453 TCATGGCAAGACGACTTG-TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
*
17436517 TTAAAATTTCTTT-GGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
196 TTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
*
17436581 GGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
17436646 GTGTCCCCATTTCAAACACTTTAATGGCTACTGAG-AGCAAACCTGTAAAATGTCAAATGCTCTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
17436710 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAG
389 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
17436775 CTCCCATTGCATATCATGTGCGCACAGCCCACCCCCCAGGCCCCTCGATCGTCAGAACCCCAATG
454 CACCCATCGCACATCATGTGCGCACA---C-CCCCCC-GGCCCCCCGATCGTCGGAACCCCAATG
* * * * * *
17436840 CCGCCGGTCAGGTTCTCCGATGATGCT-TCGACAATGGTGCCCCGACGAAGAAAAATGCGGCAAC
514 CCGTCGGTCAGGTTCTCCGACGATGCTCT-GACGATGGTGCCTCGGCGAAGAAAAATGCGGCACC
*
17436904 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT-C-A-CTT---C------
578 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
17436957 ---A-----TATGCTTAGGCTGGTAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGT
643 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * ** *
17437014 CCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGGCCTGGTCCCCCTCTGC
708 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCTCTGC
* * * * * * ** *
17437079 ATGCTGCCGATCTTGCTATCGCAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTACGT
772 GTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
17437144 CTGCCTAAGCCAACTGACAAAACGAGCGGGTGGGCGGGCGGGCGGGCTCTACGCCGACCAGAGAG
837 ATGCCTAAGCCAACCGACGAAACGAGC-GG-AGG-GGGC--GC-GGCACTACGCCGGCCAGAGAG
17437209 A
896 A
* *
17437210 CGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17437275 ATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
17437340 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGAGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
*
17437405 TTAAAATTTTTTCGGAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
** * * *** * *
17437470 GTGTGTACAAAAAATTTCAGCTAAAAACAAAAAATGTACAAGATTTTCTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
17437535 TGTCCTCATTTCAAACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
17437600 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAACTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
17437665 CCCATCGCACATCATGTGCGCACACCCCCTCCTGCCCCCCCGATTGTCGGAACCCCAATGTCGCC
456 CCCATCGCACATCATGTGCGCACACCCCC-CC-GGCCCCCCGATCGTCGGAACCCCAATGCCGTC
* ** ** *
17437730 GATCAGGTTCTTTGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
519 GGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACA
** * * * *
17437795 TGGTCGAGCCCAGCACGTGCTGTCGCAACCCTTGGTCCTGTCCGATCTTAGACTGGGAATGAACT
584 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
*
17437860 CCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
17437925 GCTCA-TCGGCCAGAGGGGCGAGATGCGTAAGCCGAGGATCGACCGGATCCCC-CTTCGCATGCT
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCTC-T-GCGTGCT
* ** * * * **
17437988 -ACTGATCCTGCTGTCGCAACCCTCAATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGC
777 GTC-GATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
17438052 CTAAGCCAACCGACGAAATGAGC-GAGGGGGCGAGCGGGCATTACGTCGGCCAGAGAGA
841 CTAAGCCAACCGACGAAACGAGCGGAGGGGGC--GC-GGCACTACGCCGGCCAGAGAGA
* ** * *
17438110 TGGGATGCGCAAGCCGTTTATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17438175 ATGCCAGTGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
17438240 TCATGGCAAGACGACACGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGCTGGTTCGAGATTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC-GGTTCGAGATTT
* * * * *
17438305 TTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATACTTTTATTTTTTTT
195 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
17438370 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
17438435 GTGTCCCCATTTCAGACACTGTAATGACTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * * *
17438500 AAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGACTAGTATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
17438565 ACCCATCGCACATCATGTACGCACACCCCCCTGGCCCCCCGATCG-CTGGAACCCCAATGCCGCC
455 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTC
* * * *
17438629 GGTCAGGTTCTCCGGCAATGCTCTGGCGATGGTGCCTCGGCGAAGAAAAATGCGACACCAGCACA
519 GGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACA
* ** * *
17438694 TGTCCGAGCCCAGCATGTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT
584 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
17438759 TCGTATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAACAAAACGAGCGTGCGGGT
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
17438824 GC-CAAGCCGGCCAGACGGGCAGGATGCGCAAGTCGAGGATCGATCGGGTCCCTCTCTACGTGCT
714 GCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC-CTCTGCGTGCT
* * * * ** * **
17438888 GCCGATCCTGCTGCCGCAATCTTCGATCCAATCCAATCTTAGACTACGAATGAACTCCGTATGCC
777 GTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * **
17438953 TAAGCCAACCGACGAAACGTGCGGACGGGAAGGCGGGTAGGCACTACTCTAGCCAGAGAGA
842 TAAGCCAACCGACGAAACGAGCGGA-GGG--GGC--G-CGGCACTACGCCGGCCAGAGAGA
* * *
17439014 CGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTAC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* ** *
17439079 ATGCCCATGGTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
17439144 TCATAGCAAGACGACTCGTTTTTTATTTTCCATAATTTTTAAAACTTTTTACAGTTCGAGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
* * * * *
17439209 TCAAAATTCTTTCGGAAGGATTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGCAATTTTTTT
196 TTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
17439274 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
17439339 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
17439404 AA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
17439468 ACCCATCGCACATCGTGTGTGCACACCTCCCCCGGCCCCCCTGATCATCGGAACCCCAATGCCGT
455 ACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGT
* * * * * *
17439533 CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATGCGACACCTGCAT
518 CGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCAC
* * * * * * *
17439598 AAGCCCAAGCCCAGCATGTGCTGCTGCAACCTTCGATTCGGTCTGATCTTAGACTGGGAATGAAC
583 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
*
17439663 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
17439728 TGCTCAACCGGCCAAAGGGGCGAGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCT
713 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCTCTGCGTGCT
* * * * *
17439793 GTCGATCCTGC-GCCGCAACCATTGATTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCC
777 GTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
17439857 TAAGCCAATCGACGAAACGAGCGG-GCGGGCAAGCGGACGGGTACTACGCCGGCCAGAGAGA
842 TAAGCCAACCGACGAAACGAGCGGAG-GGG---GC-G-C-GGCACTACGCCGGCCAGAGAGA
* *
17439918 CGGGATGTGCAAG-CGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
17439982 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17440047 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTTCGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
17440112 TTAAAATTTCTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
196 TTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * * ** *
17440176 -TCATGCACAAAAAAATTCAGGTAAAAACCCGAAGTGTAGGAGATTTTGCGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
17440240 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC--T
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
17440303 -------T-T-A----TCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAAGGCCAAGT------
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
17440349 ----A-C-CACATCATGTGCGCACACCCCCCCGGCCCGCCTGATC-TCCGGAACCCCAATGCCGT
455 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGT-CGGAACCCCAATGCCGT
* *
17440407 CGGTCAGG-T-T----C--T-C-C-GACGATGGTGCCTCGGCGAAGAAAAATGTGGCACCAACAC
518 CGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCAC
* * *
17440461 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCCGATCTTAGGCTTGGAATGAAC
583 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * *
17440526 TCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
17440591 CGCTCAGCTGACCAGAGGGGCGGGGTGCACAGGCCGGGGATCGATCGGGTCCCCTGCTGCGTGCT
713 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCT-CTGCGTGCT
* * * * * * * *
17440656 ATTGATCCTGCTACCGTAACCCTTGGTTCGGTCCAATCTTAGACTGGGAATGAA-TTCGTATGCC
777 GTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
*
17440720 TAAGCCAACCGACGAAACGAGC-----GGGC-TGGCACTACGCCGGCCAGAGAGA
842 TAAGCCAACCGACGAAACGAGCGGAGGGGGCGCGGCACTACGCCGGCCAGAGAGA
* * * *
17440769 CGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTAGGTTTAGGCAGATCTTCATATTTCTGT
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17440834 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
17440899 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
* * *
17440964 TTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGCATTTTTTTTG
196 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * * * *
17441029 GCATGCAAAAAAAAATTCAGCTAGAAACTCAAAGTCTACAATATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
17441094 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
17441159 AGGGGGTGTGAGTTCTTGAGGTTTGAGGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * ** **
17441223 CCTCATCGAACATCTTGTGCGCATACCGCCCCCGGCCCCCCGATCACCGGAACCATAATGCCGTC
456 CC-CATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC
* * *
17441288 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACA
519 GGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACA
* * ** * *
17441353 TGCCCTAGCCCAGTATGTGCCACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
584 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
17441418 CTGTATGCTTAGATTGGGAGTGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * * *
17441483 GCTCAGCTAGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGAAT-GGGTCCCCTGTTGTGTGCT
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG-ATCGGGTCCCCT-CTGCGTGCT
* * * * * *
17441547 GTCAATCCTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
777 GTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
17441612 TAA-CCGAACCGACGAAACGAGC-----GGGC-TGGCACTACGCTGGCCAGAGAGA
842 TAAGCC-AACCGACGAAACGAGCGGAGGGGGCGCGGCACTACGCCGGCCAGAGAGA
* * * * *
17441661 TGGGATGCGCAAGCCATGGATCGATAGGGCGGTAGGTAGGTTTAGGGACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * * *
17441726 ATGCCCAGGTCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
17441791 TCATGGCAAGACGACTCATTTTTTATTTTACAAGATTTTTGAAACTTTTTACGGTTCGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
*
17441856 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
17441920 GCATGCACAAAAATATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
17441985 TGTCCCCATTTCGGACACTTTAATGGCTACGGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
17442050 AGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
17442115 CCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-CT
456 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTC-
* * * *
17442179 AGTCAGGTTCTCCGACGATGCT-TCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACTAGCAC
519 GGTCAGGTTCTCCGACGATGCTCT-GACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCAC
* * * * * *
17442243 ATGCCCGAGCACAGCATGTGCTACTGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAAC
583 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
17442308 TCCATATGC-----CT----A--AA-T-CG-A--CC-----C-A--CA--AAACGAGCGTGCAGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
17442347 CGCTCAGCTGGCCAAAGGGGCGGGATGCACAAGCCGAGGATCGACCAGGTCCCCCTCTGTGTGCT
713 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCTCTGCGTGCT
* * * *
17442412 GTCGATCCTACTACCGCAACCCTCAATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCC
777 GTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
17442477 TAAGCCAACCGACGAAACGAGCGG-GCGGGCG-GGCACTA-GTCGACCAGAGAGA
842 TAAGCCAACCGACGAAACGAGCGGAGGGGGCGCGGCACTACGCCGGCCAGAGAGA
* * * *
17442529 CGGGATGCGCAAGGCGTGGAACGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGT
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
17442594 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * * *
17442659 TCTTGGTAAGACGACTTGCTTTCTATTTTTGATGATTTTTGAAACTTTTTGCGGTTCG-GAATTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAG-ATTT
* * * * *
17442723 TTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAGATA-TT-GTGGACATGATCCTTGTATTTTTG
195 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA-A-ACTTGGTAGACGTGATCCTTGTATTTTTT
* *
17442786 TTGGCATGCGA-AAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAA
258 TTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
17442850 AAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGAAGCAAACCTGAAAAATCTCAAATGCT
322 AAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
17442914 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTAC
386 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
17442979 CAGCACCCATCACACATCATTTGCACACGCCCCCCCCGGCCCCCCCAATCGTCGAAACCCCAATG
451 CAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATG
* * * * * * * * * *
17443044 CCGTCAGTGAGGTTCTTC-ATTGATGCTCCGAAGATGGTACCTCGGTGAAGAAAAATCCGGTACC
514 CCGTCGGTCAGGTTCTCCGA-CGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACC
* * *
17443108 AGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCACGGTCCGATCCGA-CTT-GACTGGGAA
578 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
*
17443171 TGAACTCCGTAT-CTTAGACT-GGAATTAACTC
643 TGAACTCCGTATGCTTAGACTGGGAATGAACTC
17443202 ACCGGCAGTG
Statistics
Matches: 6026, Mismatches: 685, Indels: 337
0.85 0.10 0.05
Matches are distributed among these distances:
851 35 0.01
852 226 0.04
853 114 0.02
855 3 0.00
858 2 0.00
862 6 0.00
863 236 0.04
864 39 0.01
865 141 0.02
866 8 0.00
867 4 0.00
868 274 0.05
869 239 0.04
870 127 0.02
871 1 0.00
872 3 0.00
873 2 0.00
874 39 0.01
875 22 0.00
876 1 0.00
877 4 0.00
878 101 0.02
879 83 0.01
880 305 0.05
881 190 0.03
882 5 0.00
883 5 0.00
884 4 0.00
885 121 0.02
886 9 0.00
887 239 0.04
888 304 0.05
889 2 0.00
890 9 0.00
891 624 0.10
892 269 0.04
893 1 0.00
895 4 0.00
896 2 0.00
898 76 0.01
899 203 0.03
900 309 0.05
901 399 0.07
902 42 0.01
903 308 0.05
904 569 0.09
905 312 0.05
906 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
TCAGGTTCTCCGACGATGCTCTGACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCTCTGCGTGCTGTCG
ATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGAGGGGGCGCGGCACTACGCCGGCCAGAGAGA
Found at i:17439681 original size:26 final size:26
Alignment explanation
Indices: 17439645--17439697 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17439635 TCGGTCTGAT
17439645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17439671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17439697 C
1 C
17439698 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17441428 original size:26 final size:26
Alignment explanation
Indices: 17441399--17441451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17441389 CTGGTCTGAT
*
17441399 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17441425 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17441451 C
1 C
17441452 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17443301 original size:156 final size:163
Alignment explanation
Indices: 17443048--17443361 Score: 502
Period size: 158 Copynumber: 2.0 Consensus size: 163
17443038 CCAATGCCGT
*
17443048 CAGTGAGGTTCTTCATTGATGCTCCGAAGATGGTACCTCGGTGAAGAAAAATCCGGTACCAGCAC
1 CAGTGAGGTTCTTCAGTGATGCTCCGAAGATGGTACCTCGGTGAAGAAAAATCCGGTACCAGCAC
17443113 TTGCCCGAGCCCAGCATGTGCTGCCGCAACCCACGGTCCGATCCGA-CTT-GACTGGGAATGAAC
66 TTGCCCGAGCCCAGCATGTGCTGCCGCAACCCACGGTCCGATCCGATCTTAGACTGGGAATGAAC
17443176 TCCGTAT-CTTAGACT-GGAATTAACTCACCGG
131 TCCGTATGCTTAGACTGGGAATTAACTCACCGG
*
17443207 CAGTG-GGTTCTTCGGTGATGCTCCGAAGATGGTACCTC-GTGAAG-AAAATGCC-GTACCAGCA
1 CAGTGAGGTTCTTCAGTGATGCTCCGAAGATGGTACCTCGGTGAAGAAAAAT-CCGGTACCAGCA
* * *
17443268 C-TGCTCGAGCCCGAGCATGTGCTGCCGCAACCCATGGTCTGATCCGATCTTAGACTGGGAATGA
65 CTTGCCCGAGCCC-AGCATGTGCTGCCGCAACCCACGGTCCGATCCGATCTTAGACTGGGAATGA
17443332 ACTCCGTATGCTTAGACTGGGAATTAACTC
129 ACTCCGTATGCTTAGACTGGGAATTAACTC
17443362 CGTATGCCTA
Statistics
Matches: 144, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
155 10 0.07
156 47 0.33
157 11 0.08
158 52 0.36
159 13 0.09
160 11 0.08
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (163 bp):
CAGTGAGGTTCTTCAGTGATGCTCCGAAGATGGTACCTCGGTGAAGAAAAATCCGGTACCAGCAC
TTGCCCGAGCCCAGCATGTGCTGCCGCAACCCACGGTCCGATCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATTAACTCACCGG
Found at i:17443345 original size:26 final size:26
Alignment explanation
Indices: 17443316--17443368 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443306 CTGATCCGAT
17443316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17443342 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17443368 C
1 C
17443369 CTAAGTGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17444264 original size:26 final size:26
Alignment explanation
Indices: 17444235--17444287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17444225 CCGGTCTGAT
17444235 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17444261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17444287 C
1 C
17444288 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17445171 original size:26 final size:26
Alignment explanation
Indices: 17445142--17445194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17445132 CTAGTCCGAT
17445142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17445168 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17445194 C
1 C
17445195 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17446063 original size:26 final size:26
Alignment explanation
Indices: 17446034--17446086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17446024 CCAGTCCGAT
*
17446034 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17446060 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17446086 C
1 C
17446087 CTAAGTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17446960 original size:26 final size:26
Alignment explanation
Indices: 17446931--17446983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17446921 CTGGTCCGAT
*
17446931 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17446957 CTTATATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17446983 C
1 C
17446984 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17447819 original size:26 final size:26
Alignment explanation
Indices: 17447790--17447842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17447780 CCAGTCCGAT
17447790 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
**
17447816 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17447842 C
1 C
17447843 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17448743 original size:26 final size:26
Alignment explanation
Indices: 17448707--17448759 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17448697 CTAGACCGAT
*
17448707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17448733 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17448759 C
1 C
17448760 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17449641 original size:26 final size:26
Alignment explanation
Indices: 17449599--17449651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17449589 CCAGTCCGCT
* *
17449599 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17449625 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17449651 C
1 C
17449652 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17450526 original size:26 final size:26
Alignment explanation
Indices: 17450497--17450549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17450487 TTGGTCCGAT
*
17450497 CTTAGACTGAGATTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17450523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17450549 C
1 C
17450550 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17451432 original size:26 final size:24
Alignment explanation
Indices: 17451403--17451452 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
17451393 CGGTCTGATA
17451403 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGG-ATGAACTC-GTATGC
17451429 TTAGACTGGGATGAACTCGTATGC
1 TTAGACTGGGATGAACTCGTATGC
17451453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.25
25 8 0.33
26 10 0.42
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (24 bp):
TTAGACTGGGATGAACTCGTATGC
Found at i:17452342 original size:26 final size:26
Alignment explanation
Indices: 17452291--17452343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17452281 CCGATCTGAT
* **
17452291 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17452317 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17452343 C
1 C
17452344 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17453212 original size:26 final size:26
Alignment explanation
Indices: 17453183--17453235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17453173 CCAGTCCGAT
*
17453183 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
17453209 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
17453235 C
1 C
17453236 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:17453426 original size:4 final size:4
Alignment explanation
Indices: 17453419--17453448 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
17453409 AAACGAGCGA
*
17453419 GCGG GCGG GCGG GCGG GTGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
17453449 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:17454120 original size:26 final size:26
Alignment explanation
Indices: 17454091--17454143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17454081 CCGGTCCGAT
*
17454091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17454117 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17454143 C
1 C
17454144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17454855 original size:26 final size:26
Alignment explanation
Indices: 17454819--17454871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17454809 CCGGTCCGAT
*
17454819 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
17454845 CTTAGACTGGGAATCAACTCCTTATG
1 CTTAGACTGGGAATCAACTCCATATG
17454871 C
1 C
17454872 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:17455767 original size:26 final size:26
Alignment explanation
Indices: 17455716--17455767 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17455706 CTGGTCTGAT
* *
17455716 CTTACACTTGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACACCATATG
* *
17455742 CTTAGACTGGGAATGAACACCGTATG
1 CTTACACTGGGAATGAACACCATATG
17455768 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCATATG
Found at i:17456661 original size:26 final size:26
Alignment explanation
Indices: 17456610--17456662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17456600 CCGGTCCGAT
**
17456610 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17456636 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17456662 C
1 C
17456663 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17458429 original size:26 final size:26
Alignment explanation
Indices: 17458393--17458443 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17458383 CGGTCCGATC
*
17458393 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
17458419 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17458444 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:17459325 original size:26 final size:26
Alignment explanation
Indices: 17459296--17459348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17459286 CCGGTCTGAT
*
17459296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17459322 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17459348 C
1 C
17459349 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17461100 original size:26 final size:26
Alignment explanation
Indices: 17461064--17461116 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17461054 CTGGTCAGAT
17461064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17461090 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17461116 C
1 C
17461117 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17461515 original size:895 final size:892
Alignment explanation
Indices: 17454184--17469428 Score: 18620
Period size: 895 Copynumber: 17.0 Consensus size: 892
17454174 CGCTCAGCCG
* *
17454184 GAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
17454249 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
17454314 GAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * *
17454379 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
17454444 TTGTTGGCTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
17454509 AAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGGAGGAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
17454574 TCTTTAAGGGGGTGTGAGTTCT-TATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
391 TCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
17454638 ACCAGCACCCATAGCACATCATGTGCGCACACCCCCGCCGG-CCCCCCGATCATCGGAACCCCAA
455 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCC-CCGGCCCCCCCGATCGTCGGAACCCCAA
* *
17454702 TGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
518 TGCCGTCAGTCAGGTTCTC---CGA--------CGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
17454767 CAGCACATGCCCGAG-CCAGTATGTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGA
572 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * *
17454831 ATGAACTCCATATGCTTAGACTGGGAATCAACTCCTTATGCCTAAGTCAACTCACGAAACGAGCG
637 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
17454896 TGCGGGCACTCAGCCAGCCGGAGGGGCGGGATACGCAAGCTGAGGATCGGCCGGGTCCCCCTCTG
702 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
* * * * * * * * *
17454961 TGTGCTACTGATCCTACTGCCGCAACCATCGGTCCAGTCCGATCTTACACT-GGAATGAACTTCG
767 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
17455025 TATGCCTAAGCCAACCGACAAAATGA--GGGC-GGC----GGGCGGGCACTACGTCGGCCA
832 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
*
17455079 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * * *
17455144 TTCTACATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATGCCCAT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * *
17455209 GAAGTTTCATGGCAACTCGACTTGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * * *
17455274 TATTGTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * * *
17455339 TTGTTGACATGCACAAAACAATTCAGCTAAACACTCAAAGTATACAAGGTTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
17455404 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
17455469 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * * * * *
17455534 CCAGCACCCATCATACATCATGAGCTCACATCCCCCACGACCCCCTCGATCGCCGGAACCCCAAT
456 CCAGCACCCATCGCACATCATGTGCGCAC--CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * *
17455599 GCCGCTGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACC
519 G-C-C--GTCA-G---TCAGGT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * * *
17455664 AGCACATGCACGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGGTCTGATCTTACACTTGGAA
573 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
17455729 TGAACTCCATATGCTTAGACTGGGAATGAACACCGTATGTCTAAGTCAACCCACAAAACGAGCGT
638 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
17455794 GCGGGCACTCAGCCGGCCAGTGGGGAGGGATGCGTAAGCCGGAGATCGACCGGGTCCCCCTCTGC
703 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
** ** *
17455859 GTGCTGTGGATCCTGCTGCCGCAACCCTCGGT-CTGATCCAATCTTAGACTGGGAATGAACTCCA
768 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTCCG
* *
17455923 TATGCCTAAGCCAACTGACGAAACGA----GCGGGCGGGT----GGGCACTACGCTGGCCA
832 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * *
17455976 GAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTTATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
17456041 TTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
17456106 GAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* *
17456171 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
17456236 TTGTTGGCTTGCACAAAAACATTCAGCTAAAAACTCAAAGTGCACAAGA-TTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * *
17456300 AAAAGGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACTTGTAAAATCTTAGATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17456365 TCTTTAAGGTGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * ** * ** * *
17456430 CCAGCACCCATCATACATCATGTGCGCACACCCCCTAGCCCCCTCGATCACCGAAACCCCAATTC
456 CCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* * *
17456495 CGTCGGTTAGGTTCTTCGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
521 CGTCAGTCAGGTTC-TC--C---G----A-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
17456560 CACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATG
575 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * *
17456625 AACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC
640 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * *
17456690 GGGCGCTCAGTCGGCCAGAGGGGTGAGATGCACAAGTCGGAGATCGACCGAGTCCCCCTCTGCGT
705 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
* * * * * *
17456755 GCTACTGATCCTGCTACTGTAACCCTCGATCC-GATCCT-ATCTTAGACT-GGAATGAACTCCGT
770 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-T-CTGATCTTAGACTGGGAATGAACTCCGT
* * * * *
17456817 ATGCCTAAGTCAATCGACGAAATGA--------GC----GGGCGGGCACTACGCTGCCCA
833 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * *
17456865 GAGAGACGGGATACTCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATAC
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
**
17456930 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
17456995 GAAGTTTCATGGCAAGTCGACTCATTTTCTATTTTTCACGATCTTCGAAACTTTTTGCGGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * *
17457060 GATTGTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
17457125 TTGTTGACATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17457190 AAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17457255 TTTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * * * * **
17457320 CCAGCACCCATCATACATCATGAGCGCACATCCCCCCGACCCCCCCCGACCATCAAAACCCCAAT
456 CCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCG-GCCCCCCCGATCGTCGGAACCCCAAT
* * * * * *
17457385 GCCG-CTGGTCAGGTTCTCCGGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCGGCACATGCG
519 GCCGTC-AGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
17457449 CGAGCCCAGCATGTGCTGTCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
583 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
17457514 ATGCTTAGACTGGGAATGAACAT-TGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGCACT
648 ATGCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * *
17457578 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATTGGTTCCCCCTCTACGTGCTGTCG
712 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCG
* * * * *
17457643 ATCCTGCTACCGCAGCCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACAT-CGTATGCCTAA
777 ATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAA
* * *
17457707 GCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCAGGTGGGCACTACGCCGGTCA
841 GCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGC----GGGCACTACGCCGGCCA
** *
17457763 GAGAGACCAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
17457828 TTCTGCGTGCCAACGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * ** *
17457893 GAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * * * * *
17457958 GATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGGCCCAAAGTAGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
17458023 TTGTTGGCATGCAAAAAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGGTTTTGTGACCATTT
261 TTGTTGGCATGC-ACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* ** *
17458088 GAAAAAAATGTCCCCATACCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
17458153 GCTTTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
** * * * * * **
17458218 TACCAGCACCCATCATACATCATGAGCGCACATCCCCCCGACCCCCCCTCGACCATCAAAACCCC
454 TACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCG-GCCCCCC-CGATCGTCGGAACCCC
* * * *
17458283 AATGCCG-CTGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCATCAGCACAT
516 AATGCCGTC-AGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * *
17458347 GCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
580 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
17458412 TGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGTACGGGCG
645 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *** * * ** *
17458477 CACAGCCGGCCAGAGGCATGGGATGCACAAGCCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGT
710 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC
* * * * * * *
17458542 CGATCCTGC-GACCGCAACCCTCAGTCCGGTCTAATCTTAGATTGGGAATCAACTTCGTATGCGT
775 CGATCCTGCTG-CCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
17458606 AAGCCAACTGACAAAACGAGCGAGCGGACGGGTGCGCGGGCACTACGCCGGCCA
839 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * * *
17458660 GAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGATGGGTTTACGCACATCTTAATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17458725 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTACACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
17458790 GAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCTG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-G
* *
17458855 -GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATT
195 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* ** * *
17458919 TTTGTTGGCATTCATTAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATATG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
17458984 AAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
17459049 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGT
390 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * ** *
17459114 ACCAGGAACCATTGCACATCATGTGCGCACACCCCCCTGATCACCCCGATCGTCGGAACCCCAAT
455 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* **
17459179 ACCGTC-GATCAGGTTCTCCATTGATATTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCAC
519 GCCGTCAG-TCAGG-T-T-C--------TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
** * * * * * *
17459243 CAATAGATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGA
572 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
17459308 ATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
637 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
17459373 TGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGCATCGATCGAGTCCCCCTCTG
702 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
* * * * * * *
17459438 CATGCTACCGATCTTGCTGCTGCAGCCCTCGGT-CTGATCCGATCTTAGACTGGGATTGAACTCC
767 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTCC
* * * *
17459502 ATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGGCGGGCATTACGCCGGCCA
831 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* *
17459564 GACAGACGGGATGCGCAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
17459629 TTCTTCGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCCCGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** ** ** *
17459694 GAA-TTT-ATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTGTGGTTTGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * *
17459757 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTATACATGATCGC-TGTATT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATT
*
17459821 TTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
17459886 AAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTAAT-GCAAGCAAACCTGTAAAATCTCAAAT
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAAT
* * * *
17459950 GCTCTTTAA-GGGGTGTGAGTTCTCGA-GTTTTATAAGGAATAGAGGGCCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
17460013 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGGCCACCCCGATCGTCGAAACCCCAA
454 TACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* *
17460078 TACCGTCAGTCAGGTTCTCTGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAAGGTC-GCA
518 TGCCGTCAGTCAGG---T-T--C--T-C--CGACGATGGTGCCCCGACGAAGAAAAATG-CGGCA
* * *
17460142 CCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAA----C---CC--T-CAATC-----C---G
571 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * *
17460189 ---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGC
636 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * ** * *
17460246 GTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCGAGTCCCCCTTT
701 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * * * * * * *
17460311 ACGTGCTACCGATCCTGCTACTGTAACACTTGGT-C-GATCCGATCTTAGACTGGGAATGAACTT
766 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAACTC
** * * * ** * * * *
17460374 CGTATGCCTAAGCCAATTGACGAAACGGGTGGGCGAGCGGACGGGTGGGCATTATGCCGGCTA
830 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * * *
17460437 GACAAACAGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
17460502 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * * *
17460567 GAAGTTTCGTGGTAAGACGACCCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
** **
17460632 GATTTTTTAAAATTTTTTCTTAAGGAGTTTTGGCCGAAAACTTGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
17460697 TTTTTGCCTTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17460762 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
17460827 TCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGT
391 TCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
17460892 ACCAGCACCCATTGTACATCAAGTGCGCACTCCCGCCCCGGCCCCCCCGATCGTCGGAACCCCAA
455 ACCAGCACCCATCGCACATCATGTGCGCAC-CCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAA
*** * *
17460957 TATTGCCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCCCCAGCACATGCC
518 TGCCGTCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
17461022 CGAGCCCAGCAAGTGCTACCGTAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGT
583 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
17461087 ATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCTCTC
648 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * * *
17461152 AACCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGACCGCATCCACCTCTACGTGCTGTCGA
713 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGA
** * * *
17461217 TCCTGCTGTTGCAACCCTTGGTCCTGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGC
778 TCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
17461282 CAACTGACAAAACGAGCGGGCGGGCAGGTGGGCGGGCACTACGTCGGCCA
843 CAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * *
17461332 AAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCCTAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
17461397 TTTTGCGTGCCACTACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * *
17461462 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAGGGTTCAA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* ** *
17461527 GATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCCGAAACATTTTTAGATGTGATCCTTGTAT
196 GATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTAT
** *
17461591 TTTTGTTCCCATTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
17461656 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGG-TACT-GCAGCAAACCTGTAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
17461719 GCACTTTAAGGGGGGTGAGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCAAATATAAGGGCCAA
389 GCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
17461783 GTACCAGCACCCATCGCACATCATATACGCACCACCCCCCGG--CCCTCTATCGCCGGAACCCCA
453 GTACCAGCACCCATCGCACATCATGTGCGCACC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* *
17461846 ATGTCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGC
517 ATG---CC-GTCA-G---TCAGGT--T-CTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGC
* * *
17461910 ACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
570 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
17461975 GAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCATATGCCTAA-TCAACCCACGAAACGAG
635 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
17462039 TGTACGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGTGATCGACTGGGTCCCCCTC
700 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
* * * **** * *
17462104 TGCATGCTGTCGATCCTACCATAGTAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACT
765 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACT
** * * *
17462168 AGGCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGAGGGCGGGCACTACGCCGG-CA
829 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
*
17462231 GAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
17462296 TTCT--ATGTAACAATGCCATTTTTGTAGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCAC
66 TTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
17462359 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
129 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * * * * * ** * *
17462424 GGGATTTTTTAAAATTTTTTTGAAAGTAATTTTGGCCCAAAACTTGACAAACTTGATCCTTGTAT
194 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
17462489 TTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
17462554 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
17462619 GCTCTTTAATGGGGTGTGAGTTCTCAAGGTTTGATAAGGGGTAGGGGGCCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
17462684 TACCAGCACCCATCGCACATCATGTGCGCACACCACCCAGCCCCCCCGATCGTCGGAACACCAAT
454 TACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * *
17462749 GCCGCCGGTCAGGTTCTCCAGCGATGCTTCGACGACGGTGCCCTGACGAAGAAAAATGTGGCACC
519 ---GCC-GTCA-G---T-CAG-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * ** ** *
17462814 AGCACATGCTCGAGCCTAGCATGTGGTGGTGCAACCCTCGGTATGATCCGATCTTAGACTGGGAA
573 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
*
17462879 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
638 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * *
17462944 GCGAGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGAGTCCCCCTCCGC
703 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * * ** *
17463009 GTGCTGCCGATCCAGTTGCCGCAAACCTCGGTCAGGTCTGATCTTAGATTGGGAATGAACTCCGT
768 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
17463074 ATGCCTAAGCCAACCGACGAAACGAGCGGTCGGGCGGGCGGGCGGGCACCACGTCGGCCA
833 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * *
17463134 GAGAGACGGGATACGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17463199 TTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
17463264 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * * * *
17463329 GATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCAAAACTTGGTAGACGTGATCCTTGTATCT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
17463394 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-TCGAAGTGTACAACATTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
17463458 AGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17463523 TCTTTAAGGGGGTTTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
17463588 CCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
456 CCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* *
17463653 CGTCGGTCAGGTTGTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAG
521 CGTCAGTCA-G--GT-------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * *
17463718 CACATGCCTGAGCCCAGTATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATG
575 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
** * * * * * *
17463783 AACTCTATACGCTTAGACTAGGAATGAACTCGGTATGCCTAAGTCAACCCACCAAATGAGCGTGT
640 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** *
17463848 AGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATTGGGTCCCCCTCTGCAT
705 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
* ** * * * * *
17463913 GCTGCCAATTTTGCTGCTGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
770 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17463978 GCCTAAGCCAACCAATGAAACGA--------GC----GGGCGGGCACTACACCAGCCA
835 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * *
17464024 GAGAGATGGGATGCGCAAGCCGGGGATCGATAAGGTGGTAGGTGAGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17464089 TT-TCACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
*
17464153 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAT-AAACTTTTTACGGTTT
130 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTACGGTTC
* * ** *
17464217 GGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTCACCCCAAACTTGGTAGACGTGATACTTGTAT
194 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
17464282 TTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACATGATTTTGGGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
17464347 GAAAAAAGCGTCCCCATTTCAG-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
17464411 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGACAGGAGGCCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* ** * * * * *
17464476 TACCAGCACCCACCAAACATCATGTGCGCACACCCTCCGACCCCCTCGATCGTCAGAACCCCAAT
454 TACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * *
17464541 GCCGCCAGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGACCCGGCGAAGAAAAACGCAGCACC
519 GCCGTCAGTCAGGTTCTC---CGA-----C---GATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * *
17464606 AGCACATGCCTGAGCCCAGTATGTGCTGCTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
573 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* *
17464671 TGAACTCTGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
638 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * ** * *
17464736 GTGGGCACTCAGCTGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGAGTCCCCGTCTGC
703 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
* * * * * *
17464801 ATGCTGCCGATCCTGCTACCGAAACCCTCAGT-CTGGTCTGATATTAGACTAGGAATGAACTCCG
768 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCG
** * * *
17464865 TATGCCTAAGCCAACCGATAAAACGAGCGGGCGGGCGGGT----GAGCACTACGTCAGCCA
832 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* *
17464922 GAGAGACGGGATGCACAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17464987 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * * * *
17465052 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTGTGAAACTTTTTGCGGTTTGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* * *
17465117 GATTTTTTACAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATAT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-T
* *
17465182 TTT-TTGGCCTGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
17465246 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
17465311 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA---GG---------GGGCCAAGT
390 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
17465364 ACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCTCAAT
455 ACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* *
17465429 GCCTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAA
519 G-C-C--GTCA-G---T-C-A-G--G-T-------T-CTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * * * *
17465494 AATGTGGCACCAACAAATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGATTCGATCT
562 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * * *
17465559 TAGACTTGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCAC
627 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * **
17465624 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGG
692 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGG
** * * * * ** *
17465689 TCCCCCTCTATGTGTTGCTGATCCTGCTACTGCAACCCTCGGT-CTGCTCCAATCTTGGACTGGG
757 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-TCTGATCTTAGACTGGG
* *
17465753 AATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGCGGGC----GGGCGGGCACTACA
821 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACG
*
17465814 CCAGCCA
886 CCGGCCA
* * * * *
17465821 GAGAGACGGGATGCACAAGCCATGGATTGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17465886 TTCTGCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
17465951 GAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACAATTTTTGAAACTCTTTGCGGTTCGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
*
17466016 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * * * * * * * *
17466081 TTGTCGGTACGAAAAAAAAAATTCAGCTAAAAAATCAAAGTTTACAAGATTTTTTGACCATTCGG
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
17466146 AAAAAGTGTCCCCATTTCGGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* ** *
17466211 TCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTTGGCCAACATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
17466276 CCAGCACCAATTGCACATCATGTGCGCACACCCCCTCGGACCCCCCGATCGTCAGAACCCCAATG
456 CCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * **
17466341 TCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCA
520 CCGTCAGTCAGGTTCT-C--CGA----C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* ** * ** * *
17466406 GCACATGCCCGAGCCCATCATGTGCTGCCATAACCCTCAGTCCATTTCGATCTTAGACTAGGAAT
574 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
17466471 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
639 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
17466536 TGGGCGCTCAGCCGACCAGAGGGGCGCGATGCGCAAGCCAGGTATCGGCTGGGTCCCCCTCTGCG
704 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * * * ** * * *
17466601 TGCTGCTGATCCTGCTGCTGCAATCGTCATTCCGGTCTGACCTTAGACTGGGAATGAACTCTGTA
769 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
17466666 TGCCTAAGCCAATCGATGAAACGAGTGGGTGGGCGGGTGGGCGGGCACAACGTCGGCCA
834 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
** *
17466725 GAGAGACAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
17466790 TTCTGCATGCCAATGCCATTTTTATATCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
17466855 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCTG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-G
* * *
17466920 -GATTTTTTAACA-TTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATT
195 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
17466983 TTTGTTGGCATGCACAAAAAAATTCAGCT-AAAGCTCGAAGTGTACAAGATTCTGTGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
17467047 AAAAAAATGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
17467112 CTCTTTAAGGGGGCT-TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGGCCAA
390 CTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAA
* * * *
17467176 GTACCAGCACCCATCACACATCATGTCCATACACCCACCCCCCGGCCCGCCCGATCGTCGGAACC
453 GTACCAGCACCCATCGCACATCATGTGC--GCA-CC-CCCCCCGGCCCCCCCGATCGTCGGAACC
* * * * *
17467241 CCAATGTCGTCGGTCAGGTTCTCCGACGATGGTACCCCGGCAAAGAAAAATGCGGCACCAGCACA
514 CCAATGCCGTCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* **
17467306 TGCCCGAGCCAAGCATGTGCTGCCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
579 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * ** *
17467371 CCGTATGCTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCTTGAAACGAGCGCGCGGGC
644 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *** * * *
17467436 GCTCAGCCGGCCAAAGGGGCGGGATACGCAAGCTGGGGATCGGGTGGGTCCCCCTTTGCATGCTA
709 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG
** * * *
17467501 CTAATCCTGCTACCGTAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
774 CCGATCCTGCTGCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
17467565 TAAGCCAATCGATG-AACTGAGCGGGCGGACAGGT----GGGCACTACGTCGTCCA
838 TAAGCCAACCGACGAAAC-GAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * * * *
17467616 GAGAGACCGGATGCGCAAGCTGTGGGTCGATAGGGTGGCAGGTGGGTTTATGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
17467681 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** *
17467746 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGG
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
* *
17467811 GAGTTTTTAAAATTTTTT-GAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
196 GATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
17467875 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
17467940 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACAC-GTAAAATCTCAAAT
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC-CTGTAAAATCTCAAAT
* * *
17468004 GATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAG
389 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
17468069 TACCAGCACCCTATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCA
454 TACCAGCACCC-ATCGCACATCATGTGCGCAC-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * ** * * ** *** * * *
17468134 ATGCTGTCGGTCAGGTTCTCCGACGATACT-CCGGCGATGGTG-CCCATGC-G-A--AGAAAAAA
517 ATGCCGTCAGTCAGGTTCTCCGACGATGGTGCC-CCGACGAAGAAAAATGCGGCACCAG-CACAT
* * * * *
17468193 G--TG-GCACCAGCATGTGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGATTAGGAATGAACT
580 GCCCGAGC-CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * ** *
17468255 CCTTATGCTTAGACTAGGAATGTACTCCACATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
644 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
17468320 GCTCAGCCAGCCAGAAGGGCGGGATGCACAAGCCGGGGATTTG-TCGGGTCCCCCTCTGTGTGCT
709 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGACCGGGTCCCCCTCTGCGTGCT
* * * * *
17468384 ACCGATCCTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAAACAGGGAATGAACTCCGTATGCC
773 GCCGATCCTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
17468449 TAAGCCAACCGACGAAATGAGCGAGTGGGCGGGCGGTCAGGCACTACGCCGGCCA
838 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* * *
17468504 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCAGATGTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
17468569 TTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGT
66 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
17468634 GAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAGGATTTTTGAAACTTTTTACGGTTTGA
131 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
17468699 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
17468764 TTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
17468829 AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCCCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17468894 TTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * **
17468959 CCAGCACCCATCGCACATCATGTGCACATACCCATCCCCCCGACCCCCTCGATCACCGGAACCCC
456 CCAGCACCCATCGCACATCATGTGCGC--A-CC--CCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * * *
17469024 AATGCCATCGGTCAGTTTCTCCGACGACGCTCTGGTGATGATGTCCC-AGCAAAGAAAAATGCGG
516 AATGCCGTCAGTCAGGTTCTCCGACGA--------TG--G-TGCCCCGA-CGAAGAAAAATGCGG
* * * * * ** * * ** *
17469088 CACCAACACATGCTCAAGCCCAACATATGCTGCTACCACCCTCAGTTTGGTCCAATCTTAGACTG
569 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
17469153 GGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
634 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
17469218 GCATGCGGGCGCTCAACCGACCATAGGGGCGGGATGCGCAAGCTGGGGAACGACCGGGTCCCCCT
699 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
* * * * * * * **
17469283 CTACATGCTGCCAATCCTCCTACCGTAACCTTCGGTCC-GATCCAATCTTAGACTGGGAATGAAC
764 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG-TCTGATCTTAGACTGGGAATGAAC
* * ** * *
17469347 TCCGTATGCCTAAGCCAACTGATGAAACGAGCGAACGGGC----GGGCGGCCACTACACCGGCCA
828 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
* *
17469408 GAAAGACGGGATGCGTAAGCC
1 GAGAGACGGGATGCGCAAGCC
17469429 CAATGCCGTC
Statistics
Matches: 12529, Mismatches: 1495, Indels: 643
0.85 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 63 0.01
870 1 0.00
871 1 0.00
872 1 0.00
873 203 0.02
874 137 0.01
875 230 0.02
876 8 0.00
877 18 0.00
878 66 0.01
879 42 0.00
880 3 0.00
881 237 0.02
882 40 0.00
883 5 0.00
884 235 0.02
885 8 0.00
886 10 0.00
887 58 0.00
888 471 0.04
889 320 0.03
890 985 0.08
891 311 0.02
892 146 0.01
893 276 0.02
894 475 0.04
895 1206 0.10
896 371 0.03
897 758 0.06
898 755 0.06
899 1026 0.08
900 924 0.07
901 657 0.05
902 1045 0.08
903 389 0.03
904 674 0.05
905 10 0.00
906 52 0.00
907 11 0.00
908 226 0.02
909 4 0.00
910 3 0.00
911 67 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
CGTCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCA
Found at i:17462016 original size:26 final size:26
Alignment explanation
Indices: 17461965--17462017 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17461955 CTGGTCCGAT
* **
17461965 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17461991 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17462017 C
1 C
17462018 CTAATCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17462902 original size:26 final size:26
Alignment explanation
Indices: 17462866--17462918 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17462856 ATGATCCGAT
17462866 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17462892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17462918 C
1 C
17462919 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17463579 original size:902 final size:902
Alignment explanation
Indices: 17460196--17469428 Score: 11838
Period size: 899 Copynumber: 10.3 Consensus size: 902
17460186 CCGGTCCAAT
* *
17460196 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17460261 CGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGG-TCGAGTCCCCCTTTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
17460325 CTGCTACTGTAACACTTGGT-CGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 CTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * * * * * * * * *
17460389 ATTGACGAAACGGGTGGGCGAGCGGACGGGTGGGCATTATGCCGGCTAGACAAACAGGATGCGCA
195 ACCGACGAAACGAG-CGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
17460454 AGCCGAGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
17460519 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGTAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17460584 CGACCCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * * *
17460649 TCT-TAAGGAGTTTTGGCCGAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCCTTGCACAA
454 T-TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17460713 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17460778 TCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGT
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGT
* * *
17460843 GAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *** *
17460908 CATCAAGTGCGCACTCCCGCCCCGGCCCCCCCGATCGTCGGAACCCCAATATTGCCAGTCAGG--
712 CATCATGTGCGCAC-ACC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
*
17460971 -T-------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCCCCAGCACATGCCCGAGC
775 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
17461027 CCAGCAAGTGCTACCGTAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17461090 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCTCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * *
17461155 CGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGACCGCATCCACCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * *
17461220 TGCTGTTGCAACCCTTGGTCCTGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17461285 CTGACAAAACGAGCGGGCGGGCAGGTGGGCGGGCACTACGTCGGCCAAAGAGATGGGATGCGCAA
196 CCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
17461350 GCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCCTATTTTTGCGTGCCACTACCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17461415 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * ** *
17461480 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAGGGTTCAAGATTTTTTAAAATTGTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** * ** *
17461545 TGGAAGGAGTTTTGGCCCGAAACATTTTTAGATGTGATCCTTGTATTTTTGTTCCCATTCACAAA
455 TGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17461610 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17461675 CAGACACTTTAATGG-TACT-GCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGGTGAG
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTG
*
17461738 AGTTCTCGAGGTTTGATGA-GGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
17461802 ATCATATACGCACCACCCCCCGG--CCCTCTATCGCCGGAACCCCAATGTCACCGGTCAGGTTCT
713 ATCATGTGCGCA-CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** *
17461865 CCGGTGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
777 CCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
17461929 TAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17461991 CTTAGACTAGGAATGAACTCCATATGCCTAA-TCAACCCACGAAACGAGTGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17462055 CGGCCAGAGGGGCGGGATGCACAAGCTGGTGATCGACTGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * ** *
17462120 TACCA-TAGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTAGGCATGCCTAAGCCA
131 TGCTACT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17462184 ACCGACGAAACGAGCGGGCGGACGGGAGGGCGGGCACTACGCCGG-CAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
17462248 AGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTAACAATG
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATG
* * *
17462311 CCATTTTTGTAGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
17462376 GACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
387 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * ** * *
17462441 TTTTGAAAGTAATTTTGGCCCAAAACTTGACAAACTTGATCCTTGTATTTTTGTTGGCATGCACA
452 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
17462506 AAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17462571 TTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17462636 GAGTTCTCAAGGTTTGATAAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
17462701 CATCATGTGCGCACACCACCCAGCCCCCCCGATCGTCGGAACACCAATGCCGCCGGTCAGGTTCT
712 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
17462766 CC-AGCGATGCTTCGACGACGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCC
777 CCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** * * *
17462830 TAGCATGTGGTGGTGCAACCCTCGGTATGATCCGATCTTAGACTGGGAATGAACTCCATATG
841 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17462892 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17462957 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGAGTCCCCCTCCGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
17463022 AGTTGCCGCAAACCTCGGTCAGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17463087 CCGACGAAACGAGCGGTCGGGCGGGCGGGCGGGCACCACGTCGGCCAGAGAGACGGGATACGCAA
196 CCGACGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
17463152 GCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17463217 TTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17463282 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17463347 TGGAAGGATTTTTTGCCCAAAACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17463412 AAATTCAGCTAAAAA-TCGAAGTGTACAACATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17463476 AGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17463541 TTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
17463606 CATGTACGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTGTCCG
715 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
17463671 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGT
780 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * ** *
17463736 ATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATACG
845 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
17463794 CTTAGACTAGGAATGAACTCGGTATGCCTAAGTCAACCCACCAAATGAGCGTGTAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * **
17463859 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATTGGGTCCCCCTCTGCATGCTGCCAATTT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17463924 TGCTGCTGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
17463989 CCAATGAAACGA-----------GCGGGCGGGCACTACACCAGCCAGAGAGATGGGATGCGCAAG
196 CCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
17464043 CCGGGGATCGATAAGGTGGTAGGTGAGTTTAGGCACATCTTCATATTT-TCACATGCCAATGCCA
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCA
17464107 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17464172 GACTCGTTTTCTATTTTTCACGATTTTAT-AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * ** *
17464236 TCGGAAGGCGTTTTCACCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
17464301 ACAATTCAGCTAAAAACTCAAAGTGTACATGATTTTGGGACCATTTGAAAAAAGCGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17464366 CAG-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * **
17464430 GTTCTCGAGGATTGATGAGGGACAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCACCAAACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
17464495 TCATGTGCGCACACCCTCCGACCCCCTCGATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTCT
714 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * * *
17464560 GACGATGCTCCGGTGATGGTGACCCGGCGAAGAAAAACGCAGCACCAGCACATGCCTGAGCCCAG
779 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ** * *
17464625 TATGTGCTGCTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACG
844 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17464684 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17464749 TGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGG-TCGAGTCCCCGTCTGCATGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
17464813 CTGCTACCGAAACCCTCAGTCTGGTCTGATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
17464878 ACCGATAAAACGA---GCGGGCGGGCGGGTGAGCACTACGTCAGCCAGAGAGACGGGATGCACAA
195 ACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
17464940 GACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17465005 TTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * * *
17465070 GACTCGTTTTCTATTTTTCATAATTTGTGAAACTTTTTGCGGTTTGGGATTTTTTACAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
17465135 TGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTT-TTGGCCTGCACAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAA
*
17465199 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17465264 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17465329 GTTCTCGAGGTTTGATGAGGGATA---GG---------GGGCCAAGTACTAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
17465382 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCTCAATGCCTCTGGTCAGGTTCTC
714 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
17465447 CGACGATGCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACAAAT
778 CGACGATGCT-C--C---G-----ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * *
17465512 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGATTCGATCTTAGACTTGGAATGAACTC
832 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
*
17465577 TGTATG
897 CGTATG
* * *
17465583 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
17465648 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGG-TCGGGTCCCCCTCTATGTGTTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * *
17465712 CTGCTACTGCAACCCTCGGTCTGCTCCAATCTTGGACTGGGAATGAACTCCGTATGCCTAAGGCA
130 CTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
17465777 ACCGACGAAACGA---GCGGGCGGGCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCACAA
195 ACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * *
17465839 GCCATGGATTGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATATTTCTGCATGCCATTGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17465904 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17465969 TACTCGTTTTCTATTTTTCACAATTTTTGAAACTCTTTGCGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * * *
17466034 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTCGGTACGAAAAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
17466099 AAATTCAGCTAAAAAATCAAAGTTTACAAGATTTTTTGACCATTCGGAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
17466164 GGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * * *
17466229 TTCTCGAGGTTTGATGAGGGATAGTTGGCCAACATAAGGGCCAAGTACCAGCACCAATTGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
17466294 CATGTGCGCACACCCCCTCGGACCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTCTCC
715 CATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** ** *
17466359 GGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAT
779 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * *** * *
17466424 CATGTGCTGCCATAACCCTCAGTCCATTTCGATCTTAGACTAGGAATGAACTCCGTATG
844 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17466483 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17466548 CGACCAGAGGGGCGCGATGCGCAAGCCAGGTATCGGCTGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * *
17466613 TGCTGCTGCAATCGTCATTCCGGTCTGACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * **
17466678 TCGATGAAACGAGTGGGTGGGCGGGTGGGCGGGCACAACGTCGGCCAGAGAGACAAGATGCGCAA
196 CCGACGAAACGAG-CGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
17466743 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** * *
17466808 TTTTTATATCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17466873 GACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCTGGATTTTTTAACA-TTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
17466937 CGGAAGGAGTTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
17467002 AAATTCAGCT-AAAGCTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAATGTCCCAATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
17467066 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCT-TGA
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGA
* *
17467130 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGGCCAAGTACCAGCACCCATCACAC
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
17467195 ATCATGTCCATACACCCACCCCCCGGCCCGCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGG-
713 ATCATGTGC--GCA--CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
17467259 --T-------T-CTCCGACGATGGTACCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAG
774 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** *
17467314 CCAAGCATGTGCTGCCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
17467378 CTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCTTGAAACGAGCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
17467443 CGGCCAAAGGGGCGGGATACGCAAGCTGGGGATCGGGTGGGTCCCCCTTTGCATGCTACTAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17467508 TGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17467573 TCGATG-AACTGA---GCGGGCGGACAGGTGGGCACTACGTCGTCCAGAGAGACCGGATGCGCAA
196 CCGACGAAAC-GAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * *
17467634 GCTGTGGGTCGATAGGGTGGCAGGTGGGTTTATGCACATCTTCATATTTCTGCGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17467699 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
17467764 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAGTTTTTAAAA-TTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
17467828 TGAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17467893 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17467958 TAGACACTTTAATGGCTACTGGCAGCAAACAC-GTAAAATCTCAAATGATCTTTAAGGGGGTGTG
584 CAGACACTTTAATGGCTACTGGCAGCAAAC-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17468022 AGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTATCGCA
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCA
* * * * *
17468087 CATCATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCTGTCGGTCAGGTTC
712 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
17468152 TCCGACGATACTCCGGCGATGGTGCCCATG-CGAAG-AAAA------A--AG----TG-GC-A--
776 TCCGACGATGCTCCGACGATGGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
17468199 CCAGCATGTGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGATTAGGAATGAACTCCTTATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
17468262 CTTAGACTAGGAATGTACTCCACATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
17468327 CAGCCAGAAGGGCGGGATGCACAAGCCGGGGATTTG-TCGGGTCCCCCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
17468391 CTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAAACAGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17468456 ACCGACGAAATGAGCGAGTGGGCGGGCGGTCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCG-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
17468521 AGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCAGATGTTCATATTTCTGCATGCCAATGGC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17468586 ATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
17468651 CGACTCATTTTTTATTTTTCAGGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
17468716 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17468781 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17468846 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTTTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17468911 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** ** *
17468976 TCATGTGCACATACCCATCCCCCCGACCCCCTCGATCACCGGAACCCCAATGCCATCGGTCAGTT
714 TCATGTGCGC--A--CA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * ** * * * * * *
17469041 TCTCCGACGACGCTCTGGTGATGATGTCCC-AGCAAAGAAAAATGCGGCACCAACACATGCTCAA
774 TCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * ** * * * * *
17469105 GCCCAACATATGCTGCTACCACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAAATCCGTATG
838 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17469170 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
17469235 CGACCATAGGGGCGGGATGCGCAAGCTGGGGAACGACCGGGTCCCCCTCTACATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
17469300 TCCTACCGTAACCTTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
17469365 CTGATGAAACGAGCGAACGGGCGGGC-GGC---CACTACACCGGCCAGAAAGACGGGATGCGTAA
196 CCGACGAAACGAGCG-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
17469426 GCC
260 GCC
17469429 CAATGCCGTC
Statistics
Matches: 7290, Mismatches: 909, Indels: 270
0.86 0.11 0.03
Matches are distributed among these distances:
883 1 0.00
884 225 0.03
885 2 0.00
886 1 0.00
887 56 0.01
888 498 0.07
889 12 0.00
890 822 0.11
891 336 0.05
892 103 0.01
893 212 0.03
894 190 0.03
895 562 0.08
896 116 0.02
897 3 0.00
898 449 0.06
899 1024 0.14
900 538 0.07
901 328 0.04
902 817 0.11
903 374 0.05
904 247 0.03
905 7 0.00
906 39 0.01
907 9 0.00
908 229 0.03
910 6 0.00
911 84 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17465460 original size:11 final size:11
Alignment explanation
Indices: 17465444--17465476 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17465434 TGGTCAGGTT
17465444 CTCCGACGATG
1 CTCCGACGATG
17465455 CTCCGACGATG
1 CTCCGACGATG
*
17465466 CTCCAACGATG
1 CTCCGACGATG
17465477 GTGCCCCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:17465586 original size:26 final size:26
Alignment explanation
Indices: 17465557--17465609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17465547 CTGATTCGAT
*
17465557 CTTAGACTTGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
17465583 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
17465609 C
1 C
17465610 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:17466495 original size:26 final size:26
Alignment explanation
Indices: 17466457--17466509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17466447 CCATTTCGAT
17466457 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17466483 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17466509 C
1 C
17466510 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17468288 original size:26 final size:26
Alignment explanation
Indices: 17468236--17468288 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17468226 CCGGTCCAAT
* **
17468236 CTTAGATTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCACATG
*
17468262 CTTAGACTAGGAATGTACTCCACATG
1 CTTAGACTAGGAATGAACTCCACATG
17468288 C
1 C
17468289 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:17469180 original size:26 final size:26
Alignment explanation
Indices: 17469144--17469196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17469134 TTGGTCCAAT
17469144 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
17469170 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17469196 C
1 C
17469197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17470750 original size:158 final size:159
Alignment explanation
Indices: 17470450--17470825 Score: 436
Period size: 158 Copynumber: 2.4 Consensus size: 159
17470440 ACTCCATATG
* ** *
17470450 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAAAGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17470515 TGGCCAGATGGGCGAGATGCGTAAGTCGGGGATCGACCGGGTCCCTCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCTCTCTACGTGCTACCAATCC
* * *
17470580 TGCTACCGCAA-CCTCGGTCTGGC-CTGAT
131 TGCTACCACAACCCTCAGTCCGGCTC-GAT
* * *
17470608 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * **
17470673 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCC-CTTCTATGTGCTGTCAATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCTC-TCTACGTGCTACCAATC
* *
17470737 CTGCTGCCACAACCCTCAGTCCGGGTCGAT
130 CTGCTACCACAACCCTCAGTCCGGCTCGAT
* * *
17470767 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCG-GACGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCG
17470826 GGCAGGCACT
Statistics
Matches: 182, Mismatches: 32, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 117 0.64
159 63 0.35
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCTCTCTACGTGCTACCAATCC
TGCTACCACAACCCTCAGTCCGGCTCGAT
Found at i:17471939 original size:25 final size:26
Alignment explanation
Indices: 17471911--17471962 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17471901 CTGGTCCGAT
*
17471911 CTTAGA-ATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17471936 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17471962 C
1 C
17471963 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17472849 original size:26 final size:26
Alignment explanation
Indices: 17472813--17472865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17472803 CTGGTCCAAT
* *
17472813 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17472839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17472865 C
1 C
17472866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17473746 original size:25 final size:26
Alignment explanation
Indices: 17473712--17473763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17473702 CTGATTTGAT
17473712 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17473737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17473763 C
1 C
17473764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17474092 original size:898 final size:897
Alignment explanation
Indices: 17471633--17477480 Score: 7412
Period size: 899 Copynumber: 6.5 Consensus size: 897
17471623 TGCGTGTGAG
* * * * *
17471633 TACTAGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGCTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
17471698 GAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
17471763 CCCTGGCCCCCCGGATCGTCGAAACGCCAATGCCGTCGGTCAGGTTCTCCTGTGATGCTCCGACG
131 CCC-CGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCTCCGATG
* * * * *
17471828 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATATGCTGA-GGTA
194 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ACCGCA
* * * * *
17471892 ACCTTCGGTCTGGTCCGATCTTAGAATGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTTC
258 ACCCTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
*
17471957 GTATGCCTAAGTCAACCCACGAAACA-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGAATGC
323 GTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * ** *
17472021 ACAAGCCAGGGATTGG-CTGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGTCGCAACCCTCAGT
387 ACAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGT
* * *
17472085 ACGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGC
451 CCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--G-GC
** * * *
17472149 GGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGT
512 GGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
17472214 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAATGCCATTTTTATGGCTTGTAAAT
577 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
17472279 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTT
642 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * * *
17472344 CACGATTTTCAAAACTTTTAACGG-TCTGATATTTTTGAAAATGTTTTCGGAAGGAGTTTTTGTC
707 CACGATTTTTGAAACTTTTTACGGTTCGGAT-TTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17472408 CCAAACTTGGTAGACTTGGTCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT
770 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17472473 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC-CTTTTATGGC
835 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
17472535 TACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
17472600 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
17472665 CCCCGACCCCCTCGATCGTCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCAATG
131 CCCCG-CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGCTCCGATG
* * *
17472730 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGCTACCACAA
194 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* * * * * *
17472795 GCCTTGGTCTGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCC
259 CCCTCGGTCTGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
17472860 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAAACGGGCAGGATGCG
323 GTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
*
17472925 CAA-CCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTC
388 CAAGCC-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTC
* * * * *
17472989 CAGTCTGATCTAAGACTGGGGATGAACTCCGTATGCTTAAGCCAACCGACGAAACGA-GCGGACG
452 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCG
*
17473053 GGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
517 GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
17473118 GTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
582 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17473183 CAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGA
647 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
17473248 TTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGCCCCAAAC
712 TTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
17473313 TTGTTAAAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGC
776 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17473378 ATACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGC
841 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17473435 TACTGGCAACAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
17473500 GAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCGCCCATCACGCATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
17473565 CCCCGCCCCCCCGATCGCCGAAACCCCAATGCCGCCAGTTAGGTTCTCTGACGACGCTCTGGTGA
131 CCCCGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGCTCCGATGA
* *
17473630 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
195 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
**
17473695 CCTCGGTCTGATTTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
260 CCTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * * * **
17473760 ATGCCTAAGTCAACCCACGAAAAGAGCGTGTAGGCGCTCAGCAGGCCAGATGGGTGGGATGTGCA
325 ATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * * * ** * *
17473825 AGTCGGGGATCGATCGGGTCTCCCTCTTCGTGCTACTAATCCTGCTACCACAATCCTCGGTCCGG
390 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGG
* *
17473890 TCTGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAACGA-GCGGGCGGGC
455 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGC
* *
17473954 AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGCG
520 AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17474019 GGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
585 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17474084 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--C---TTCTATTTTCCATGA-TT
650 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
17474143 TTGAAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTT
715 TTG-AAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * * *
17474208 GGTAAAAGTGGTCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTTGAAGTGT
778 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
17474273 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACATTAATGGG
843 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17474328 TACTAGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
17474393 GAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTACGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * *
17474458 CCCGGCCCCCCGGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCTGTGATGCTCCGACGA
131 CCCCGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCTCCGATGA
* * * **
17474523 TGGTGCCCCGACGAAGAAAAAT-AGGCACCAGCAAATGCCTGAGCCCAGCATGTGCTAAGGCAAC
195 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * * * *
17474587 CTTCGGTCT-AGTCCGATCTTAGAATGGAATGAACTCCTTATGCTTAGACAGGGAATGAACTTCG
260 CCTCGGTCTGA-TCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *** *
17474651 TATGCCTAAGTCAACCCACGAAACA-AGCGTGCGGGCACTCAGCCCATCAGAGGGGCGGAATGCA
324 TATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
* * * * ** * *
17474715 CAACCCGGGGATTGG-CTGGGTCCCCCTCTGCGTGTTGCCGATCCTACTGTCGCAACCCTCAGTA
388 CAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTC
*
17474779 CGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGCG
452 CGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--G-GCG
** * *
17474843 GGCGGGTGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCAG-GGATCGATAGGGT
513 GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGT
*
17474907 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAATGCCATTTTTATGGCTTGTAAAT
577 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
17474972 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTT
642 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * *
17475037 CACGATTTTCAAAAC-TTTTAGCGGTCCGGGATTTTTTAAAATGTTTTCGAAAGGAGTTTTGGTC
707 CACGATTTTTGAAACTTTTTA-CGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
17475101 CCAAACTTGGTAGACATGGTCCTTGTATTTTTCTTGGCATACACAAAAACATTCAGCTAAAAACT
770 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
17475166 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCATACCCTTTAATGGC
835 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
17475229 TACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
17475294 GAGGGATA---GG---------GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
17475347 CCCCGGCCCCCCCGATCGTCGAAACCTCAATGCCTCTGGTCAGGTTCTCTGACGATGCTCCGACG
131 CCCC-GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGCT-C--CG
* ** * *
17475412 ATGCTCCAACGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATG
191 A---T-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
17475477 TGCTACCGCAACCCTCGGTCTGATTCGATCTTAGACTTGGAATGAACTCTGTATGCTTAGACTAG
248 TGCTACCGCAACCCTCGGTCTGATCCGATCTTAGAC-TGGAATGAACTCCGTATGCTTAGACTGG
* * * *
17475542 GAATGTACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCAGCCAGAGG
312 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * **
17475606 GGCGGGATGCGCAAGTC-GGGATCGGTCGGGTCCCCCTCTACGTGTTGCTGATCCTGCTACTGCA
377 GGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACA
* * * * * *
17475670 ACCCTCGGTCTGCTCCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAAC
442 ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
17475735 GAGCGGGCGGGCGGGCGAACGGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCGAAAG-CGAT
507 GA---GGCGGGCGGGC--A--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-T
* * * * *
17475799 GGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCATGCCATTGCCATTTTT
564 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
17475864 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTC
629 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
17475929 GTTTTCTATTTTTCAAAATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAA
694 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAA
* *
17475994 GGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATT
758 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
17476059 CAGCTAAAAACTGGAAGTGTACAAGATTTTGTTACGATTTGAAAAAAGTGTCCCCAATTT-AGAC
823 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGAC
17476123 ACTTTAATGGC
887 ACTTTAATGGC
* * * * *
17476134 TACTGGCAG-AAACCTGTTACATGTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
17476198 GAGAGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** * * * **
17476263 CCCTCGGCCCCCCCGATCGTCAAAACCCCAATGCCATCAGTCAGGTTCTACGGCAATGCTCCGGC
131 CCC-C-GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCTCCGAT
* * **
17476328 GATGGTTCCCCGATGAAGAAAAATGCGAAACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
193 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * * * * *
17476393 ACCCTTGATCCGGTCCGATCTTAGA-TGGGAATGAACTCCGTATGCTTAGACCGGGAATGAAATC
258 ACCCTCGGTCTGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * * * *
17476457 CATATGCCTACGTCAACCCATGAAATGAGCGTACAGGTGCTCAGCCGACCAGAGGTGCGGGATGC
322 CGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * * * * * * * *
17476522 ACAAGTCAAGGATTGGTTGGGTCCCCCTCTGCATGCTGGCGCTCCTGTTGCCACAA-CTTC-GAC
387 ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAG-T
* * *
17476585 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGAGGGCG
451 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--CGA-GGC-
* * * *
17476650 GGCGAGCGGGCGAGCAGGCGGGCACTACGCGGGCTAAAGAGATGGGATGCGCAAGCCGTGGATCG
512 -G-G-GC--G-G-GCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
17476715 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
570 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* *
17476780 TGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTC
635 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
17476845 TATTTTTCATGATTTTTGAAACTTTTTCCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGAGTT
700 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG-ATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
17476910 TTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTA
764 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
17476975 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCGTTTCAGACACTTTAA
829 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
17477040 TGGC
894 TGGC
* *
17477044 TACTGGCAGCAAACCTATAAAATCTCTAATGCTCTTTAAGGGGG-GTGAGTTCTC-AGGGTTTGA
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGA
17477107 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-TAGTGCGCACAC
65 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-GTGCGCACAC
* * * *
17477171 CCCCTCGGCCCCCCGATCG-CTGGAACCCTAATGCCGCCGGTCAGGTTCTC--CG--G-T--GAT
129 CCCCCCGCCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCCGAT
** * * *
17477228 --T-GTG-CCATAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGAATGTGCTGCCGC
193 GATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
* *
17477289 AACCCTTGGTC-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
257 AACCCTCGGTCTGA-TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * ** *
17477353 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTTGGCACTCAGCCGGCCAGA--GG-GGGAT
320 TCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * **
17477415 GCACAAGCC-GGGATC-GACTGGGTCCCTCTCTGCATGCTACCGATCCTACTACTGCAACCCTCA
385 GCACAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCA
17477478 GTC
449 GTC
17477481 TGATCCGATC
Statistics
Matches: 4302, Mismatches: 545, Indels: 205
0.85 0.11 0.04
Matches are distributed among these distances:
889 47 0.01
890 42 0.01
891 4 0.00
892 242 0.06
893 368 0.09
894 36 0.01
895 17 0.00
896 174 0.04
897 70 0.02
898 449 0.10
899 464 0.11
900 150 0.03
901 369 0.09
902 338 0.08
903 259 0.06
904 60 0.01
905 398 0.09
906 174 0.04
907 39 0.01
908 37 0.01
909 9 0.00
910 428 0.10
911 30 0.01
912 2 0.00
913 1 0.00
914 4 0.00
916 44 0.01
917 45 0.01
918 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCCGATGAT
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
CTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAA
GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCA
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
Found at i:17474654 original size:26 final size:25
Alignment explanation
Indices: 17474604--17474655 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17474594 CTAGTCCGAT
* *
17474604 CTTAGAATGGAATGAACTCCTTATG
1 CTTAGAAGGGAATGAACTCCGTATG
*
17474629 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGA-AGGGAATGAACTCCGTATG
17474655 C
1 C
17474656 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGAAGGGAATGAACTCCGTATG
Found at i:17477338 original size:26 final size:26
Alignment explanation
Indices: 17477309--17477361 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17477299 CCAGTCCGAT
17477309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17477335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17477361 C
1 C
17477362 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17478474 original size:26 final size:26
Alignment explanation
Indices: 17478445--17478497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17478435 TCCGGTCTAT
* *
17478445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGAATG
17478471 CTTACACTGGGAATGAACTCCGAATG
1 CTTACACTGGGAATGAACTCCGAATG
17478497 C
1 C
17478498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGAATG
Found at i:17479740 original size:678 final size:677
Alignment explanation
Indices: 17478399--17479744 Score: 1977
Period size: 678 Copynumber: 2.0 Consensus size: 677
17478389 GCACCAGCAC
* ** * * * * *
17478399 ATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTCTATCTTAGACTGGGAATGAACT
1 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCGATCTTAGACTAGAAATGAACT
* * **
17478464 CCGTATGCTTACACTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCATGTTGGC
66 CCGTATGCTTACACTGGGAATGAACTCCGAATCCCTAAGTCAACCCACAAAACGAGCATGCAGGC
* * * * *
17478529 GCTCAGCCTGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTG
131 GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCACTCTGCATGCTG
** * * *
17478594 CCGATCCTACTATCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGTCT
196 CCGATCCTACTATCACAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCT
* **
17478659 AAGCCAACCGACGAAACGAGAGGGCGGGCAGGCACTACACCGGCCAGAGAGACAGGATGCGCAAG
261 AAGCCAACCGACAAAACGAGAGGGCAAGCAGGCACTACACCGGCCAGAGAGACAGGATGCGCAAG
* * *
17478724 CCGTGGATAGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
326 CCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * * *
17478789 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCATGTGAAGTTTCATGGCAAGATG
391 TTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATGGGAAGTTTCATGGCAAGACG
* * *
17478854 ACTCGTTTTCTACTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTT
456 ACTCGTTTTCTACTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17478919 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAA
521 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGCCATGCACAAAAA
* * *
17478984 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTATTTCA
586 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCA
17479049 GACACTTTAATGGCTACTAGCAAAAAA
651 GACACTTTAATGGCTACTAGCAAAAAA
*
17479076 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGTCTAGAAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGAT-CGATCTTAGACTAGAAATGAAC
* * * * * *
17479141 TCCGTATGCTTAGATTGGGAATGAACTCTGTATCCCTAAGTCAACCCATAAAACGAGCGTGCAGG
65 TCCGTATGCTTACACTGGGAATGAACTCCGAATCCCTAAGTCAACCCACAAAACGAGCATGCAGG
* * * *
17479206 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCCTGGTCCCACTCTGCATGCT
130 CGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCACTCTGCATGCT
* *
17479271 GCCGATCCTA-TTTCCACAACCCTCGGTCTGATCCAG-TCTTAGACTGGGAATGAACTCCGTATG
195 GCCGATCCTACTAT-CACAACCCTCGATCTGAT-CAGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
17479334 CCTAAGCCAACCGACAAAACGAGCA-GGCAAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
258 CCTAAGCCAACCGACAAAACGAG-AGGGCAAGCAGGCACTACACCGGCCAGAGAGACAGGATGCG
* *
17479398 TAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
322 CAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
17479463 CCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATGGGAAGTTTCATGGCAA
387 CCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATGGGAAGTTTCATGGCAA
17479528 GACGACTCGTTTTCTA-TTTCTC-TCGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
452 GACGACTCGTTTTCTACTTT-TCAT-GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
** * * *
17479591 TTTTTCGAAAGGA-TTTTCGGTTCCAAGCTTGGTAGACATGGTCCTTGT-TTCTTTGTTGCCATG
515 TTTTTCGAAAGGAGTTTT-GGCCCCAAACTTGGTAGACATGATCCTTCTATT-TTTGTTGCCATG
*
17479654 CACAAAAAACTTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCC
578 CACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCC
17479719 CCATTTCAGACACTTTAATGGCTACT
643 CCATTTCAGACACTTTAATGGCTACT
17479745 GGCAGCAAAC
Statistics
Matches: 595, Mismatches: 66, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
677 49 0.08
678 543 0.91
679 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (677 bp):
ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCGATCTTAGACTAGAAATGAACT
CCGTATGCTTACACTGGGAATGAACTCCGAATCCCTAAGTCAACCCACAAAACGAGCATGCAGGC
GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCACTCTGCATGCTG
CCGATCCTACTATCACAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACAAAACGAGAGGGCAAGCAGGCACTACACCGGCCAGAGAGACAGGATGCGCAAG
CCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATGGGAAGTTTCATGGCAAGACG
ACTCGTTTTCTACTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGCCATGCACAAAAA
AATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTAGCAAAAAA
Found at i:17480055 original size:26 final size:26
Alignment explanation
Indices: 17480019--17480071 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17480009 GTGGTTCGAT
17480019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17480045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17480071 C
1 C
17480072 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17481656 original size:26 final size:26
Alignment explanation
Indices: 17481606--17481658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17481596 CTGGTCCAAT
**
17481606 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTAAGTATG
*
17481632 CTTAGACTGGGAATGAACTAAGTATG
1 CTTAGACTGGGAAAGAACTAAGTATG
17481658 C
1 C
17481659 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTAAGTATG
Found at i:17485314 original size:26 final size:26
Alignment explanation
Indices: 17485278--17485330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17485268 CCGGTCCGAT
17485278 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17485304 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17485330 C
1 C
17485331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17487110 original size:26 final size:26
Alignment explanation
Indices: 17487070--17487122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17487060 TTGGTCCGAT
* *
17487070 CTTAGAATGGTAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
17487096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17487122 C
1 C
17487123 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17487638 original size:893 final size:895
Alignment explanation
Indices: 17481808--17495983 Score: 17653
Period size: 893 Copynumber: 15.9 Consensus size: 895
17481798 AATGAATGAA
* *** * * * * * **
17481808 CTCAGCCGGCCAGAAGGAATGGATGAGCAAGCCAGGGATCGATTGGGTCCCCCTTTGTGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * * * * * *
17481873 CGATCCTGCTGCTGCAACCCTCTATCTGGTCTGATCTGAGATTGGGAATGAATTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * **
17481938 AGCCAACCGACTAAAC-GAACGGGCGGGCGGGCACTACGTCGTCCAAAAAGACGAGATGCATAAG
130 AGCCAACCGACGAAACGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
17482002 CTGTGGATCAATAGGGTGGTAGCTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
195 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17482067 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT
260 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ***
17482132 ACTCGTTTTCTATTTTTCATGATTTACAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
325 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
17482197 GAAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATCCTTGTATTTTCGTTGGCATGCACAAAAC
390 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
17482262 AATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCA
455 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17482327 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGT
520 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
17482392 TCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAAGGTCAAGTACCAGCATCCATCGTACATC
585 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
17482457 ATGTGCGCATACCCCCCTGGCCCCACCGATCGCCGGAACCTCAATGCCATCGGTCAGGTTCTCCG
650 ATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
17482522 GCGATGCT-CTAGCGATGGTGCCCCGAGGAAGAAAAATGTGCCACCAGCACATGCCCAAGCCCAG
714 GTGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * * *
17482586 CATGTGCTGCCGTAAACCTCAGTCTGATCCGATCTTAGACTGGGAATGAA--CC---T-C---G-
778 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
17482641 -T----ATG-----C---T---TAAGTCAACCCACGGAACGAGTGTGCGGGTG
843 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * * *
17482678 CTCAATCGGCCAGA-GGG-GGGATGCTCGAGCTGGGGATCAGTCGGGTCCCCCTCTGCATGTTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * ** * * *
17482741 CAATCCTGCTACCGCAACCCTCGGTTTGATCTGATCTTAGACTGGGAATGACCTCTGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
17482806 AGCCAACCGATGAAAC-GAGCGGGCGGGTGAGAGGGCGGCCCTACGTCGACCAGAGAGACGGGAT
130 AGCCAACCGACGAAACGGAGCGGGC----G-G-GCG-GGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
17482870 GCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGGACAT-TTCATATTTCTACGTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
17482934 ATGCCATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17482999 CAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
17483064 GTTTTTCGGAAGGA-TTTTCGACCCGAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATG
383 TTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
17483127 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTG-AAAAAGTGTC
447 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTC
* *
17483191 CCCATTTCAGACGCTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
511 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
17483256 GTTGTGAGTTCTTGAGGTTTGATG-GGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGC
576 GGTGTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * * *
17483320 ATCATACATCA-GAGTGCACAACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCG-CTGA
640 ATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GG
* ** * * * * **
17483383 TCTGGTTCTTTGGCGATGCTCCGGCGATGGTTCCCCGATGAAGAAAAATGCAGCACCAGCACATG
702 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * * ** *
17483448 CCCGAGCCCAGTATGTGCCGTCGCAACCCTCGGTCCAGTCCGATCTTAGGCTGGGAATGAACTCC
767 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * * *
17483513 GTATGCTTCGAATGGGAATAAACTCCGCATGCCTAAGTCAACCCACGAAATGAACGTGCGGGAG
832 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * * *
17483577 CTCAGCCGACCAGAGGGGATGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * * * * * * *
17483642 CGATCTTGTTGCAGTAACCCAT-GGTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATCCCT
65 CGATCCTGCTACCGCAACCC-TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
17483706 AAGCCAACCAACGAAAC-GAGCGGGCGGGCGGGCGGGTACTACGCTGGCCAGAGAGACGGGATGC
129 AAGCCAACCGACGAAACGGAGCGGGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGC
*
17483770 GCAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
190 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
17483835 GCCATTTTTATGGCTTCTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
255 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * ** *
17483900 AGATGACTCGTTTTTTATTTTT-GCGATTTTTGAAACTTTTTATAGTTCAGGATTTTTTAAAATT
320 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
17483964 TTTTCGAAAGG-GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
385 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17484028 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
450 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
17484093 TTTTAGACACTTTAATGGCTACT-GCAGCAAAACCTGTAAAAATCTCAAAAGGCCCTTTAA-GGG
515 TTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGT-AAAATCTC-AAATGCTCTTTAAGGGG
*
17484156 GTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGAGTACCAGCA-CCA
577 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCA
* * * * *
17484220 TCACACATCATATGCGCACCACCCCCCCGCCCCACCGATCGTCGGAAGGCCCAATGCCGTCGGTC
641 TCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCCGATCGTCGGAA-CCCCAATGCCGTCGGTC
* * *
17484285 AAGGTTCTCCGGTGATGGCT-CGATG-TCGTGCCCC-AGCGAAAGAAAAATG-CGCACCAGCACA
704 -AGGTTCTCCGGTGAT-GCTCCGACGATGGTGCCCCGA-CG-AAGAAAAATGTGGCACCAGCACA
* *
17484346 TGCCCTG-GTCCC-G-ATGTGCTGCCGCCAACCCTCAGTCTGGTCCCGAT-TTAGAATGGGAATG
765 TGCCC-GAG-CCCAGCATGTGCTGCCG-CAACCCTCGGTCTGGT-CCGATCTTAGACTGGGAATG
* * *
17484407 AACTTCTGAATTGCTTAGACT-GGAACTGAACTCCGTATTGCCTAA-TCAACCCACGAAATGAGG
826 AAC-TCCGTA-TGCTTAGACTGGGAA-TGAACTCCGTA-TGCCTAAGTCAACCCACGAAACGA-G
* *
17484470 AGTACGGGCG
886 CGTGCGGGCG
* * * ** **
17484480 CTCAGTCGGCCAGAGGGCCAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * * *
17484545 CGATCCTGCTACTGTAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
65 CGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
17484609 AAGCCAACCGACGAAAC-GAGCGGGCGGGCGGGCACTACGACGCCCAAAGAGACGGGATGCGCAA
129 AAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17484673 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGCCA
194 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17484738 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAACAC
259 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
17484803 GACTTGTTTTCTATTTTTCACAATTTTTGAAAATTCTTGCGGTTCAGGATTTCTTAAAATTTTTT
324 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
17484868 GGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCGTGCACAAAA
389 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
17484933 AAATTCAGCTAAAAACTCAAAGTGTACAAGATATTGTGACCATTGGAAAAAAGTGTCCCCATTTA
454 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17484998 AGACACTTTAGTGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
519 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17485063 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
584 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
17485128 CATGTGCACACA-CCCCCGTGGCCCCCCGATCG-CTGGAACCCCAATG-C--C--ACAGG-T-T-
649 CATGTGCGCACACCCCCCG-GCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * **
17485183 AGGT--T-CTTCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
712 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC-
* * * *
17485245 AG-ATGTGCTACC-TAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
776 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
17485308 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
841 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17485363 CTCA-ACGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGCATGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * *
17485427 CAATCCTACTACCGCAACCCTC-AGTTCGGTCTGAT-TTCAGACTGGGAATGAACTCCGTATGCC
65 CGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCC
* * * * *
17485490 TAAGCCAACCGACGAAAC-GAGCGAGCGGACGGGCACTACGCCTGCCAGAGACACGAGATGCGCA
128 TAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17485554 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAGTGCC
193 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
17485619 ATTTTTATGGTTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGT
258 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
17485684 TGACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTT
323 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
*
17485749 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAA
388 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17485813 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTT
453 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17485878 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
518 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17485943 GTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGTACCCATCGCACA
583 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * * *
17486008 TCATGTGCGCACACCCCCCCGACCCCCCCGATCACCGAAACCCCAATACCGCCGATCAGGTTCTC
648 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
17486073 CTGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCTCATGCTCGAGCCCA
712 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * *
17486138 GCATGTGCTGCCACAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
777 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
17486203 ACTGGGAATGAACTTCGTATTCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCG
842 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * **
17486257 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* *
17486322 CGATCCTGCTACCGTAACCCTC-AGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
65 CGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * ** *
17486386 AAGCTAACCAACGAAACAAGCAAGCGGGCGGGCGGGCACTACGTCATCCAGAGAGATGGGATGCG
129 AAGCCAACCGACGAAAC--G-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *** *
17486451 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTCCATATTTCTATGTGCCAATT
191 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
17486516 CCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
256 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
17486581 GACGAATTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
17486646 TTTGGGAAGCATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTATTGGCATGCACA
386 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
17486711 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAT
451 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17486776 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGT
516 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
17486841 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCA
581 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
17486905 CATCACGTGCGCACACCCCCCGGTCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCT
646 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * *
17486970 TTGGTGATGCTCCGACGATGGTGTCCC-AGCGAAGAAAAATTTGGCACCAGCACATGCCCGAGCC
711 CCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * * * *
17487034 CAGCATGTGCTACCGCAACCCTCAGAT-TGGTCCGATCTTAGAATGGTAATGAACTCTGTATGCT
775 CAGCATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
17487098 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCG
839 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
17487155 CTTAGCCGGCCAGAGGGGCGAGATGCGTAAGTCGGGGATCAGTCGAGTCCCCCTCTACGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * * * * * * * *
17487220 CAATCCTGCTGCCGTAATCCTTGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17487285 AGCCAACCGATGAAAC-GAGCGGGCGGGCGGGCACTACACCGGCCATAGAGA-GGCATGCGCAAG
130 AGCCAACCGACGAAACGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
17487348 CCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
195 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17487413 TTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
260 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
17487478 ACTCGTTTTCTATGTTTCACGATTTTTGAAACTTTTTACGGTTCGGGGTTTTTTTAAATCTTTTC
325 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
17487543 AGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
390 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17487608 AACTCAGCTAAAAACTCGAAGTGTACAAGATATTGTGACCATTTGAAAAAGGTGTCCCCATTTCA
455 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17487673 GACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
520 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17487738 TCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATC
585 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
17487803 ATATGCGCACACCCCCCCGACCCCCCTGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
650 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
17487868 GTGATGCT-------T--T-----GACAAAGAAAAATGTGGCAGCAGCACATGCTCGAGCCCAGC
714 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * *
17487919 AAGTGCTGCCGCAACCCTCAGTTCAGGT-CGATCTTAGAC-GGGAATGAACTTCGTATGCTTAGA
779 ATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
17487982 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCG
843 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
17488035 TTCAGCCGGCCAGAGAGGCAGGATGCGCAAGCTGGGGATCGGTCAGGTCCCCCTCTACGTGCTGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * * * * * * *
17488100 CGATCCTACTGCCACAACCATCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTG
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
17488165 AGGCAACCGACGAAACTAGTGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGATGGGATGCAC
130 AGCCAACCGACGAAAC--G-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
17488230 AAGCCGTTGATTGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCTAATGC
192 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17488295 CATTTTTATGGCTTGTAAA-TCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
257 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
17488359 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATCTT
322 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
17488424 TTCAGAAAGTGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
387 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17488489 AAAAACTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATT
452 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17488554 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTG
517 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
17488619 AGTTCCCGAGGTTTGATGAGGGATAAGTGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCAC
582 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * *
17488684 ATCATGTGTGCACACCCCCCAGCCCCCCCGATCATTAGAACCCCAATG-CATCGATCAGGTTCTC
647 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** ** * *
17488748 CGGCGATGGTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCTCAAGCCCA
712 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * *
17488813 GCATGTGTTACCGGAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG-ACTCCGTATGTTTAG
777 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
17488877 AATGGGAATGAACTTCGTATGCGTAAGTTAACCCATGAAACGAGCGTGTGGGCG
842 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * * *
17488931 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGACGATAGACCGGGTCCCCCTCTGCATGCTAT
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * ** * * ** *
17488996 CAATCCTACTGTCACAACCCTTGATCCGGT-TCGATCTTAGACTTCGAATGAACTCCGTACGCCT
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
17489060 AAGCCCACCGATGAAATGAGCGGGCAAGCGGGCGGGCGGGCTCTACGCCAGCCAGAGAGACGGGA
129 AAGCCAACCGACG-AA--A-C-GG--AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
17489125 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTTTGCTTGCC
187 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
17489190 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
252 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
17489255 GCAAGACAACTCGTTTTCTTTTTTTTACAATTTTT-AAATCTTTTTACGGTTCGAGATTTTTTAA
317 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAA
* **
17489319 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTGT
381 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
17489383 GCACAAACAAACTCAGCTAAAAACAT-GAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGT
446 GCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
17489447 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
510 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17489512 GTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCC
575 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* **
17489577 ATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAAT-CCACCGGTCA
640 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
*** * * * *
17489641 GGTTC-CTCAACGATGCTCTGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCC
705 GGTTCTC-CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
* * *
17489705 CGAGCCCAGCATGTGCTTCCGTAACCCTCGG-C----CTGATC-----C--------AA-TCCG-
769 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
17489750 AT-CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGTG
834 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17489811 CTCAGTCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTAC
* * * * * * *
17489876 CGATCCTGCTGCCACAACACTCGATCCAGTCTGATCTAAGATTGGGAATGAACTCCGTATACCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17489941 AGCCAACCGACGAAACAAGCGGGCAGGCGGGCAGGCGGGCACTACGTCGG-TAGAGAGACGGGCT
130 AGCCAACCGACG--A-AA-C-GG-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
17490005 ACGCAAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGGCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
17490070 ATACCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** **
17490135 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCCAGA-TTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * ** *
17490199 TTTTTTCGGAAGGGGTTTTGGCACCAAACTTGGTAGACGTGATCAATGTATTTTTGTTGGCGTGC
383 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
17490264 ACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
448 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *** * *
17490329 CATTTTAGACACTTTAATGGCTGCAAACAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGC
513 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * ** * *
17490394 TGTGAGTTCTCGAGGTTTGATAAGGGATAGGTGGATATTATACGGGCCAAGTACCAGCACCCA-C
578 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
17490458 TGCACATCATGTACGTACACCCTCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCG-CAGGTCA
643 -GCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCA
* *
17490521 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCG
705 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC
* * * * *
17490586 GAGCCTAGCAAGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTTGACTGGGAATGAACTCCGTA
770 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
17490651 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
835 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * **
17490712 CTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCTTCTGCGTGCGGC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTAC
* * * * ** *
17490777 TGATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
17490842 AGCCAACCGACGAAATGAACGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGCAT
130 AGCCAACCGACG--A--AAC-GG-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
17490907 GCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * *
17490972 GTGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGCGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * *
17491037 CAAGTCGACTCATTTTTTATTTTTCATGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
17491102 TTTTTT-GGATGGAGTTTTGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
383 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
17491166 AAAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCC
448 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * **
17491231 CATTTCAGACACTTGAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGG
513 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17491296 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATC
578 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *** * *
17491361 ACACATTATGTGCGCACAACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCTACCAGTCAA
643 GCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
** ** *
17491426 GTTCTCC---G--G-T-----GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATTCCCG
706 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
*
17491480 AGCCCAGCATGTGCTGCTGCAA-CC-C--TC--G---G---TT---C--GG--TG---T--G-AT
771 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
17491520 -CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGCG
836 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
17491579 CTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * ** * *
17491644 CGATCCTGCTACCTCAACCCTCGGTCCAATCTGGTCTTAGACTAGGAATGAACTCCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17491709 AGCCAACCGACGAAACAAGCAAGTGGGCGGGCGGACAGGCACTACGTCGGACAGAGAGACGGGAT
130 AGCCAACCGACGAAAC--G-GAGCGGGCGGGC-G---GGCACTACGCCGGCCAGAGAGACGGGAT
* * *
17491774 GCGCAAGCAGTGGATCAATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * *
17491839 ATGCAATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
17491904 CAAGACGACTCATTCTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCAGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * *
17491969 CTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGC
383 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
17492034 ACAAAAAAATTTAGCTAAAAACAT-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
448 ACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
17492098 CCA-TTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
512 CCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
17492162 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
576 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * * *
17492227 TCGTACATCATGTGCGCAAACCCCCCCCGACGCCCCCGATCGCCGGAACCACAATGCCGCCGGCC
641 TCGCACATCATGTGCGC--ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
* * * *
17492292 AGGTT-TTC---G--G-T-----GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCC
704 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
* * ** *
17492345 CGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTTTGATCTTAGACTGGGAATAAACTCCGT
769 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
17492410 ATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAATGAAACGAGCGTACGGGCA
834 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
17492472 CTCAGCCGGCCAGAAGGGCGGGATGCAG-AAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGTTA
1 CTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTA
* * * * *
17492536 TCGATCCTGCTACCACAACCCTCGATCCGGTCAGATCTTATACTGGGAATGAACTCCATATGCCT
64 CCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
17492601 TAGCCAACCGACAAAATGAGCGG-GCGGACGGGCGGGCTTGTACTACGTCGACCAGAGAGATGGG
129 AAGCCAACCGAC-GAA--A-CGGAGCGGGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGG
* * * * *
17492665 ATGCGCAAGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCATGA
186 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
17492730 CAATGTCATTTTTATGGGTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCAT
251 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** * * * *
17492795 GGCAAGACAACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTTGCGATTCGAGATTTTGT-A
316 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* *
17492859 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCAT
381 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
17492924 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
446 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
17492989 CCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
511 CCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
17493054 GGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCAAAATACCAGC-CAC
575 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-C
* * * **
17493118 CATCGCACATCATGTGCGTACACCCCCCCTGGCCCCCCGGATCATTAGAACCCCAATGCCGTCGG
639 CATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
* ** * *
17493183 TCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCGGTACATG
702 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * ** *
17493248 CCTGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
767 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* **
17493313 GTATGCTTAGATTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
832 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * *
17493377 CTCAGCCTGCCAGAGGGGCATGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTGCATGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * * * * * * *
17493442 TGATCTTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17493507 CGCCAATCGACGAAACGAGTGAGCGAGCGGGCCGGTGGGCACTACGCCGGCCAGAGAGACGGGAT
130 AGCCAACCGACGAAAC--G-GAGCGGGCGGG-C---GGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
17493572 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACATGTCA
188 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
17493637 ATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
253 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17493702 CAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAA
318 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
17493767 TTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGG
383 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
17493832 ACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAGGTGTCCC
448 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
**
17493896 CATTTCAGACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
513 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17493961 TGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
578 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
17494026 GCACATCATGTGCGCACACCACTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGT
643 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
*
17494091 TCT----T--TG----G-CGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAG
708 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * * *
17494145 CCCAGCATGTGCTGCTGCCACCCTTGGTCCT-GTCTGATCTTAGATTGGGAATGAACTCCATATG
773 CCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17494209 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTG
837 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
17494268 CTTAACCGGCTAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTAC
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
*
17494333 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
65 CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17494398 AGCCAACCGACGAAACGAGTGAGCAGGCGAGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGC
130 AGCCAACCGACGAAAC--G-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
** * * * **
17494463 AAGCTATGGATCGATAGGGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTTCATGAAAATGC
192 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17494528 CATTTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAA
257 CA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17494593 GATGACTCGTTTTCTATTTTTCTCGATTTTTGAAACTTTTTGCGGTTCGGGATTTTGTAAAATTT
321 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
*
17494658 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTATTTTT-TTGGCATGCACA
386 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
17494722 AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
451 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17494787 TCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGT
516 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17494852 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCACA
581 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17494917 TATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTC
646 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
17494982 TTCGGCT-ATGCTTCCG-CGATGGTGCCTCGATGAAGAAAAATGTGACACCAGCACATGCCCGAG
710 TCCGG-TGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
17495045 CCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G-TC-----C--GG--T---CT--G-AT-C
773 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ** *
17495084 TTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTTTGCGCG
838 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
17495142 CTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTG-GATGCTA
1 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCG-TGCTA
* * * * ** *
17495206 CTGATCTTGCTACTGCAACCCTC-AGTCTGGTCCAATCTTAGACTGCGAATGAACTCCGTATGCC
64 CCGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
17495270 TAAGCCAACCGACGAAATGAGCGAGCGAGCGAGCGGGCACTATGACGGCCAGAGAGACGGGATGC
128 TAAGCCAACCGACGAAA--CG-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
17495335 GCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCATT
190 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
17495400 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
255 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
17495465 AGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATT
320 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
17495530 TTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGGAC
385 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
17495595 AAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCA
450 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
**
17495660 TTTCAGACACTTTAATGGCTACTGGTGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
515 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17495725 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGC
580 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** *
17495790 ACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTT
645 ACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * *
17495855 CTCCGATGATGCTCCGGTGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
709 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * *
17495920 CTAACATGTGCTGTCGCAACCCTTGATCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
774 CCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17495984 CTAAGCCAAC
Statistics
Matches: 11599, Mismatches: 1374, Indels: 636
0.85 0.10 0.05
Matches are distributed among these distances:
863 11 0.00
864 3 0.00
865 1 0.00
867 448 0.04
868 390 0.03
869 5 0.00
870 14 0.00
871 3 0.00
872 9 0.00
873 497 0.04
874 794 0.07
875 67 0.01
876 3 0.00
878 66 0.01
879 408 0.04
880 479 0.04
881 291 0.03
882 425 0.04
883 60 0.01
884 433 0.04
885 106 0.01
886 48 0.00
887 179 0.02
888 335 0.03
889 56 0.00
890 7 0.00
891 300 0.03
892 146 0.01
893 1072 0.09
894 163 0.01
895 197 0.02
896 238 0.02
897 67 0.01
898 545 0.05
899 731 0.06
900 918 0.08
901 639 0.06
902 492 0.04
903 177 0.02
904 180 0.02
905 476 0.04
906 116 0.01
909 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTACC
GATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
Found at i:17487990 original size:26 final size:25
Alignment explanation
Indices: 17487951--17488002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
17487941 TCAGGTCGAT
17487951 CTTAGACGGGAATGAACT-TCGTATG
1 CTTAGACGGGAATGAACTCT-GTATG
17487976 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAC-GGGAATGAACTCTGTATG
17488002 C
1 C
17488003 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTCTGTATG
Found at i:17488882 original size:25 final size:26
Alignment explanation
Indices: 17488848--17488897 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
17488838 TGGTCTGATC
*
17488848 TTAGACTGGGAATG-ACTCCGTATGT
1 TTAGAATGGGAATGAACTCCGTATGT
*
17488873 TTAGAATGGGAATGAACTTCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
17488898 CGTAAGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGT
Found at i:17492423 original size:26 final size:26
Alignment explanation
Indices: 17492387--17492438 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17492377 CTGGTTTGAT
17492387 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
17492413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17492439 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17494219 original size:26 final size:26
Alignment explanation
Indices: 17494183--17494235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17494173 CCTGTCTGAT
*
17494183 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17494209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17494235 C
1 C
17494236 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17497538 original size:26 final size:26
Alignment explanation
Indices: 17497509--17497560 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497499 CGGTCTGATA
* *
17497509 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGCAATGAACTCCATATGC
17497535 TTAGACTGGCAATGAACTCCATATGC
1 TTAGACTGGCAATGAACTCCATATGC
17497561 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTCCATATGC
Found at i:17498439 original size:26 final size:26
Alignment explanation
Indices: 17498410--17498462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17498400 CCGATCAGAT
17498410 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17498436 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17498462 C
1 C
17498463 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17499340 original size:26 final size:26
Alignment explanation
Indices: 17499300--17499352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17499290 TTAGTCTGAT
17499300 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
17499326 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
17499352 C
1 C
17499353 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:17499546 original size:890 final size:887
Alignment explanation
Indices: 17495935--17500205 Score: 5378
Period size: 902 Copynumber: 4.8 Consensus size: 887
17495925 ATGTGCTGTC
* * *
17495935 GCAACCCTTGATCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
17496000 AACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 AACGAACGGGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
17496065 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTA
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCCATTTTTA
* *
17496129 TGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCAAGTGAAGTTTCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCG
** * * * * *
17496193 TTTTCTATTTTTCTTGATTTTTGAAACTTTTTGCCGTTCAAGATTTTTTAAAATTTTTTCAGTAG
259 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
17496258 GAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC
* *
17496323 AGCTAAAAACTTGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
17496388 TTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
17496453 AGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
17496518 CGCACACCCCCTGGGCTCCCCGATCGTCGGAACCCCAATTCTATCGGTCAGGTTCACCGACGATG
584 CGCACACCCCC--GGCCCCCCGATCGTCGGAACCCCAATGC--T--GTC-GG-TCA--G--G-TT
* * ** * *
17496583 CTCCGATGATGGTGCCTCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGC
636 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGC
* * *
17496648 TGCTGCAA-CC-C---TC-G---G-TC-----C--G---G---TCCG-AT-CTTAGACTGGCAAT
701 TACCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
17496688 GAACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAGCCAGCCAGAGGGGCG
766 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCG
* * * * * ** * * * * *
17496753 GGATGCACAATCCGAGGATCAGCCGGGTCCCCCTCTGCATGTTACCAATCCTGCTGCC
830 GGATACGCAAGCTGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
* *
17496811 ACAACCCTCAGTCCGGTGC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-
1 GCAACCCTCGGTCC-GT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
17496874 -AA--AATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTG
64 AAACGAACGGGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
17496936 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTCTGTGTGCCAATGCCATTTTT
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGTGTGCCAATGCCATTTTT
* * *
17497001 ATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
193 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTC
* * * * *
17497066 ATTTTCTATTTTTCACGATTTTCAAAACCTTTTGCGGCTCGAGATTTTTTTAAATTTTTTCGGAA
258 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
*
17497131 GGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATT
323 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
* *
17497195 CAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
17497260 CCTTAATGGCTACTGGCAGCAAACCTATAAAATTTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC
453 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
17497325 GAGGTTTGATGAGGGACAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
518 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** ** *
17497390 GCGTACA----C--CCCCCC--T-G--GGCCCCCCAA-----TC-GTCA-GAACGCC-A--A---
583 GCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGG
* * * **
17497431 TG--CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGTCGCAACCCT
648 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCT
* * * * *
17497494 CGGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCATAT
713 CGGTTCAGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
17497559 GCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCACAAT
777 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGCCAGAGGGGCGGGATACGCAAG
* * * *
17497624 CTGAGGATCAACCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTGCC
841 CTGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
* *
17497671 ACAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACA
1 GCAACCCTCGGTCC-GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * * * *
17497735 AAACGAGCGGGCGGAGGGGCGGGCAGGCACGATGCCGGCCAGAGAGATGGGATGTGCAAGCCGTG
64 AAACGAACGGGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * *
17497800 GATCGATAGGGTGGTAGGCGGGTTTTGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTG
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
* * *
17497865 TGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGACAAGACGACTCA
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCG
* * * * * *
17497930 TTTTTTATTTTTCATGATCTTCAAAACCTTTTGCGGTTCGAGATTTGTTAAAATTTTTTCGGAAG
259 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
*
17497995 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGC-AAAACATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC
* *
17498059 AGCTCAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
17498124 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
17498189 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
17498254 CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGCTCAGGTTCTCCGGCGATG
584 CGCACA-CCCCCG-GCCCCCCGATCGTCGGAACCCCAAT---GCTG-TC-GG---T-CAG-G-TT
* * *
17498319 CTCCGATGATGGTGCCCCGACGAAGAAACATTTGGCACCAGCACATGCCCGAGCCTAGCATGTGC
636 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGC
* * *
17498384 TACCGCAACCCTC-GATCCGATCAGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGA
701 TACCGCAACCCTCGGTTCAG-TCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGA
* * *
17498448 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACTAGAGGGG
764 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGG
* * * * ** *
17498513 CGGGATACGCAAG-TCGGCGATCGATCGGGTCCCACTCTACGTGCCACCGATCCTGCTGTT
828 CGGGATACGCAAGCT-GGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
* * * ** * *
17498573 GTAGCCCTCGGTTCGATCTGATCTTAGACACGAAATGAACTCCGTATCCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
17498638 AACGATCGGGCAGACGGGCGGACGGGCATTACATCGGCCAGAAAGACAGGATGCGCAAGCCGTGG
65 AACGAACGGGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** *
17498703 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
17498768 GGCTTG-AAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGT
* * * * *
17498832 TTTCCATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
260 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * ** *
17498897 TGGTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATTAACAAAAACATTTA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
* * * * *
17498962 GCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCACTTCAAACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17499027 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAACGGGGTGTGAGTTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
17499092 GGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
17499157 GCACACCCCTCGGCCCCTCGATTGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCAACGATGGT
585 GCACACCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGGT
* *
17499222 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGTCCGAGCCTAGCATGTGCTACCGTAACCCTC
649 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTC
* *
17499287 GGTTTAGTCTGATCTTAGACTGGCAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
714 GGTTCAGTCTGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** *
17499352 CCTAAGTCAACAGATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATACGCAAGC
778 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATACGCAAGC
17499417 TGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
842 TGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
* * *
17499463 GCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGA
1 GCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
**
17499528 AACGAACGGGCGGACGGGCGGGGCGGGCAGACGGGCACTACGTCTACCAGAGAGACGGGATGCGC
65 AACGAACGGGCGGA----C-GGGC--G--GACGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
17499593 AAGCCGTGGATCAATAGGG-GGTAGGTCGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
121 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* *
17499657 CATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAG
186 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAG
* * * * * * * * **
17499722 ACGACTTGTTTTCTATTTTTTAGGATTTTCGAAACTTGTTGCAGTTTGATATTTTTTTAAACCTT
251 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* **
17499787 TTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACACGATCCTTGTATTTTTGTTGGCATGCACAA
316 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17499852 AAAAATTCACCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
381 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17499917 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
446 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17499982 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACCAGCACCCATCACAC
511 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
17500047 ATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCATAGGTCAGGTTCTCC
576 ATCATGTGCGCACACCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCC
* * * * * *
17500112 GACGATGGTGCCCCGGCGAAGAAAAATATGGCTCCAACACATGCCCGAGCCCAGCATGTGCTGCC
640 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACC
**
17500177 GCAACCCTCGGTTCAGTCCAATCTTAGAC
705 GCAACCCTCGGTTCAGTCTGATCTTAGAC
17500206 GTGATCCTTG
Statistics
Matches: 2959, Mismatches: 336, Indels: 177
0.85 0.10 0.05
Matches are distributed among these distances:
834 50 0.02
835 2 0.00
836 3 0.00
839 2 0.00
840 1 0.00
841 1 0.00
842 3 0.00
843 2 0.00
844 1 0.00
848 3 0.00
849 2 0.00
851 2 0.00
852 1 0.00
855 1 0.00
858 4 0.00
859 2 0.00
860 191 0.06
861 1 0.00
862 7 0.00
863 389 0.13
864 89 0.03
865 5 0.00
868 1 0.00
869 1 0.00
871 6 0.00
872 95 0.03
873 242 0.08
874 144 0.05
876 64 0.02
877 1 0.00
885 2 0.00
887 1 0.00
889 2 0.00
890 286 0.10
891 8 0.00
892 2 0.00
893 2 0.00
894 4 0.00
895 5 0.00
896 2 0.00
897 4 0.00
898 62 0.02
899 516 0.17
900 2 0.00
901 188 0.06
902 556 0.19
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAACGGGCGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTT
TTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGGTGC
CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGG
TTCAGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATACGCAAGCTGGG
GATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT
Found at i:17502393 original size:26 final size:26
Alignment explanation
Indices: 17502357--17502409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17502347 TTAGTCTGAT
*
17502357 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17502383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17502409 C
1 C
17502410 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17502919 original size:887 final size:882
Alignment explanation
Indices: 17500201--17502953 Score: 3504
Period size: 899 Copynumber: 3.1 Consensus size: 882
17500191 AGTCCAATCT
* *
17500201 TAGACGTGATCCTTGTATATTTATTGGCATGCACAAAAAAATTCAGC-AAAAAACTCGAAGTGTA
1 TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAA-TCGAAGTGTA
*
17500265 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCA
65 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
17500330 AACCTGTAAAATCACAAATGCTCTTTAGGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
130 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGG
* *
17500395 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGTGCACACCCCCCCGACCCCC
195 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
* * * * * *
17500460 CCGATCGTCGGAACCCCAATGTTGCCGATCAGGTTCGT-CGGCGATGGTGCCCCGACGAAGAAAA
260 CCGATTGTCGGAACCCCAATGCTGTCGGTCAGGTTC-TCCAGCGATGGTGCCCCGGCGAAGAAAA
** *
17500524 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGTCCTGTCTGATCTT
324 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGT--TGTCTGATCTT
* * * * * * *
17500589 AGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAATTTCGTATGCCTAAGTCAACACA-T
386 AGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** *
17500653 AGAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGGG
451 A-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGACCGAG
* * * *
17500718 TCCCCCTCCGCGTGCTG-CTGATCGTGCTGCCACAACCCTTGGTCCT-GTTTGATCTTAGACTTG
514 TCCCCCTCTGCGTGCTGTCTGATC-TGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGAC-TG
* * *
17500781 GAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGACGGGCAGGCGGGCGGGCGACCA
576 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCGGGCGGGC-GG-G--CA
* * * * *
17500846 CTACGCCAGCAAGAAAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
633 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGC
* *
17500911 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGT-TCCT
697 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCT-CT
* * * *
17500975 TAAGCCTTTACGTGAAGTTTCTTGGTAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACT
761 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* *
17501040 TTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGGTAA-GAGTTTTGGCCTCAAACTTGG
826 TTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGCCCT-AAACTTGG
*
17501098 TAGACATGATCCTTGTATTTTTATTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
1 TAGACATGATCCTTGTATTTTTA--TTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGT
* * *
17501163 ACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGTAGC
64 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17501228 AAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGG
129 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGG
* *
17501293 GGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCGC
194 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCC
* * *
17501358 CCCGATTGCCGGAACCCTAATGC-CTCTGGTCAGGTTCTCTGACGATGCTGCTGTGATGGTGCCC
259 CCCGATTGTCGGAACCCCAATGCTGTC-GGTCAGGTTCTC---C-A----GC---GATGGTGCCC
* * *
17501422 CGGCAAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C----
312 CGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTG
* *
17501481 T-TG------G-TT-CG---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTACGCCTAAGT
377 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
17501529 CAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGA-GGG-GAGATGCGCAAGCTGGGAAT
442 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGAT
** * * **
17501592 CGGTCGAGTCACCCTCTACGTGCTGT-TGATCCTGCTGCCGCAACCCTCAATCTGGTCTGATCTT
506 CGACCGAGTCCCCCTCTGCGTGCTGTCTGAT-CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
* ** * * * *
17501656 AGACTAGAATGAACTCCGTATGTGTAAGCCAATCGACGAAGCGAGCGGGCGGCGAGCGGGCAGGC
570 AGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-G-G-GCGGGCGGGC
* *
17501721 ACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTATAGG
632 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GGGTAGGTGGGTTTAGG
** * *
17501785 CACATCTTCATATTTCTGTGTG-CAATGCTATTTTTTATGGC-TGTAAATTCATACAATGCGTCC
696 CACATCTTCATATTTCTACGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATG-GTCT
* *
17501848 CTGAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCT-TTTTTCACGATTTTCAAAA
759 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * *
17501912 CTTTTTGTGGTTCG-GATTGTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGG
824 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGCCCTAAACTTGG
* * * * *
17501971 TAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATTATTCAGCTAAAAACTCGAAGTGTA
1 TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAA-AATTCAGCTAAAAAATCGAAGTGTA
* * *
17502036 CAAGATTTTGTGACCATTTGAAAAAAATATCCCAATTTCAGACACTTTAATGGCTACTGGCAGCA
65 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17502101 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATACGG
130 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGG
* *
17502166 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCC
195 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
* * *
17502231 CCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTCTCCAGCGATGGTGCCCTGGTGAAGAAAAA
260 CCGATTGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGCGAAGAAAAA
* *
17502296 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTTAGTCTGATCTTA
325 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G-TT-GTCTGATCTTA
17502361 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
387 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
17502426 AACGAGCGTGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC-CTAAGTCGGGGATCAACCGAGT
452 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAG-CGGGGATCGACCGAGT
* * * *
17502490 CCCCCTCTGCGTGCTGTCAG-TGCTGCTGCTGCAACCCTCGGTCTGGCCAGATCTTAGACTGGGA
515 CCCCCTCTGCGTGCTGTCTGAT-CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGA
* * * *
17502554 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAATGGGCGGGTGGACGGGCACTACGTCGGC
578 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGC
* **
17502619 CAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGGGTAGGTCAGTTTAGGCACATCTTCATA
643 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGGGTAGGTGGGTTTAGGCACATCTTCATA
**
17502684 TTTCTACGTGCCAACACCATTTTTATGGCTTG-AAAGTTCATACAATGGTCTCTTAAGCCTTCAC
708 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGTCTCTTAAGCCTTCAC
* * * *
17502748 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAAGATTTTCGAAACTTGTTGCGGTTC
772 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC
* *
17502813 GAGATTTTTTTAAATTTTTTCGGAAGGACTTTTGCCCTAAACTTGG
837 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCTAAACTTGG
* *
17502859 TAGACACGATCCCTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
1 TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
17502924 AAGATTTTGTGACCATTTGAAAAAAGTGTC
66 AAGATTTTGTGACCATTTGAAAAAAGTGTC
17502954 TGAATTTTTT
Statistics
Matches: 1601, Mismatches: 184, Indels: 152
0.83 0.09 0.08
Matches are distributed among these distances:
861 59 0.04
862 2 0.00
863 1 0.00
864 2 0.00
868 1 0.00
869 1 0.00
870 1 0.00
871 18 0.01
872 239 0.15
873 52 0.03
874 60 0.04
875 110 0.07
876 17 0.01
877 6 0.00
878 3 0.00
879 3 0.00
880 6 0.00
881 36 0.02
882 66 0.04
883 4 0.00
884 62 0.04
885 7 0.00
886 5 0.00
887 238 0.15
888 126 0.08
889 95 0.06
890 40 0.02
892 1 0.00
893 1 0.00
894 1 0.00
897 21 0.01
898 2 0.00
899 242 0.15
900 7 0.00
901 1 0.00
902 1 0.00
907 2 0.00
909 2 0.00
910 60 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCC
CGATTGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGCGAAGAAAAAT
GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTGTCTGATCTTAGATT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGACCGAGTCCCCCT
CTGCGTGCTGTCTGATCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGCCCTAAACTTGG
Done.