Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 91 of 117
Found at i:17503633 original size:4 final size:4
Alignment explanation
Indices: 17503580--17503738 Score: 63
Period size: 4 Copynumber: 40.8 Consensus size: 4
17503570 TCTTTTGTGT
* * *
17503580 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
* * *
17503627 TTTA TTTA TTTA TTTA TTT- TTCTA TTAA TGTT- TATA TGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA -TTTA TTTA
* * * * *
17503676 TATA GTTC TGTA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
17503722 -TTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTT
17503739 TTCTTGTAAT
Statistics
Matches: 118, Mismatches: 21, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
3 29 0.25
4 72 0.61
5 16 0.14
6 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:17504939 original size:58 final size:57
Alignment explanation
Indices: 17504858--17505091 Score: 303
Period size: 59 Copynumber: 3.9 Consensus size: 57
17504848 TTTCTTTAAA
*
17504858 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-C-AAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
**
17504919 TGGAAATCAAAGTTTCAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAA-TTTCAAAAAAATAT-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
17504979 TAAAAATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTT-CAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
*
17505036 TAAAAATAAATTTTCAAAAAAAAATATTTTTTGGGAAAAGTTG-AAGTATCATTTTT
1 TAAAAATAAA-TTTC--AAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTT
17505092 TTCTACACAA
Statistics
Matches: 157, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
57 17 0.11
58 36 0.23
59 58 0.37
60 38 0.24
61 8 0.05
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (57 bp):
TAAAAATAAATTTCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17504948 original size:60 final size:58
Alignment explanation
Indices: 17504858--17505091 Score: 330
Period size: 60 Copynumber: 3.9 Consensus size: 58
17504848 TTTCTTTAAA
*
17504858 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-CAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
**
17504919 TGGAAATCAAAGTTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAA-TTTCAAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
17504979 TAAAAATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
*
17505036 TAAAAATAAATTTTCAAAAAAAAATATTTTTTGGGAAAAGTTG-AAGTATCATTTTT
1 TAAAAATAAA-TTTC-AAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTT
17505092 TTCTACACAA
Statistics
Matches: 158, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
57 16 0.10
58 45 0.28
59 43 0.27
60 46 0.29
61 8 0.05
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (58 bp):
TAAAAATAAATTTCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17508996 original size:18 final size:19
Alignment explanation
Indices: 17508973--17509014 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
17508963 ACAATGGATG
17508973 AAAAATGA-G-AAAAGAGAA
1 AAAAATGATGAAAAAG-GAA
17508991 AAAAATGATGAAAAAGGAA
1 AAAAATGATGAAAAAGGAA
17509010 AAAAA
1 AAAAA
17509015 AAGAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (19 bp):
AAAAATGATGAAAAAGGAA
Found at i:17509003 original size:19 final size:18
Alignment explanation
Indices: 17508973--17509060 Score: 60
Period size: 17 Copynumber: 4.9 Consensus size: 18
17508963 ACAATGGATG
17508973 AAAAATGAG-AAAAGAGAA
1 AAAAATGAGAAAAAG-GAA
17508991 AAAAATGATGAAAAAGGAA
1 AAAAATGA-GAAAAAGGAA
* *
17509010 AAAAA-AAGAAAAA-AAA
1 AAAAATGAGAAAAAGGAA
*
17509026 AGAAAATGA-AAGAAATG-A
1 A-AAAATGAGAA-AAAGGAA
* *
17509044 GAAAATGAAAAAAAGGA
1 AAAAATGAGAAAAAGGA
17509061 GATTCAAATT
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
16 3 0.05
17 23 0.41
18 16 0.29
19 9 0.16
20 5 0.09
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (18 bp):
AAAAATGAGAAAAAGGAA
Found at i:17509024 original size:9 final size:10
Alignment explanation
Indices: 17508982--17509031 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
17508972 GAAAAATGAG
17508982 AAAAGAGAAAA
1 AAAAGA-AAAA
* **
17508993 AAATGATGAA
1 AAAAGAAAAA
*
17509003 AAAGGAAAAA
1 AAAAGAAAAA
17509013 AAAAGAAAAA
1 AAAAGAAAAA
17509023 AAAAGAAAA
1 AAAAGAAAA
17509032 TGAAAGAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 27 0.84
11 5 0.16
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:17510406 original size:41 final size:41
Alignment explanation
Indices: 17510330--17510551 Score: 385
Period size: 41 Copynumber: 5.4 Consensus size: 41
17510320 ATGATTGTAA
*
17510330 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
17510372 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
17510413 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
17510455 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
17510496 AGGAGCAATTTA-TTT-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
17510535 AGGAGCAATTTATTTTC
1 AGGAGCAATTTATTTTC
17510552 NNNNNNNNNN
Statistics
Matches: 173, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
39 36 0.21
40 6 0.03
41 75 0.43
42 56 0.32
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:17510469 original size:83 final size:83
Alignment explanation
Indices: 17510330--17510551 Score: 414
Period size: 83 Copynumber: 2.7 Consensus size: 83
17510320 ATGATTGTAA
17510330 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
17510395 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
17510413 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
17510478 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
17510496 AGGAGCAATTTA-TTT-C-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTC
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTC
17510552 NNNNNNNNNN
Statistics
Matches: 137, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
80 39 0.28
81 1 0.01
82 3 0.02
83 94 0.69
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:17513193 original size:271 final size:270
Alignment explanation
Indices: 17512709--17513203 Score: 758
Period size: 271 Copynumber: 1.8 Consensus size: 270
17512699 CCACCTACAG
* * *
17512709 CACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCGGCCCTCCGGCCGGTTGAGCACCC
1 CACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCGCCCCTCCAGCCGGCTGAGCACCC
* * *
17512774 GCACACTCGTTTCACGGGTTGACTTAGGCACATGGAGTTCATTCACCATCTAAGATTGGACCGGA
66 GCACACTCGTTTCACAGGTTGACTTAGGCACACGGAGTTCATTCACCATCTAAGATCGGACCGGA
* * *
17512839 CTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGTTGATGCCACATTTTTCTTTGTCGGG
131 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGATGCCACATTTTTCTTCGTCGGG
*
17512904 GCACCATCGTCGGAGCATCATCGGAGAACTCACACCCCCTTAAAGAGCATTTTAGACAACACGCA
196 GCACCATCGTCAGAGCATCATCGGAGAACTCACACCCCCTTAAAGAGCATTTTAGACAACACGCA
17512969 AGATCGACAA
261 AGATCGACAA
* * *
17512979 CACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGTGCACC
1 CACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCAT-CCGCCCCTCCAGCCGGCTGAGCACC
* * * * *
17513044 CGCACGCTTGTTTCGCAGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCGGATCG
65 CGCACACTCGTTTCACAGGTTGACTTAGGCACACGGAGTTCATTCACCA-TCTAAGATCGGACCG
* * *
17513108 GACCGAGGGTTGTGGCAGCACATGCTGGGTTCGGGCATGTGTTGGTGCTACATTTTTCTTCGTCG
129 GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGATGCCACATTTTTCTTCGTCG
* *
17513173 GGGCACCATCGTTAGAGCATCGTCGGAGAAC
194 GGGCACCATCGTCAGAGCATCATCGGAGAAC
17513204 CTGACCGGCG
Statistics
Matches: 200, Mismatches: 23, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
270 41 0.20
271 159 0.80
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (270 bp):
CACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCGCCCCTCCAGCCGGCTGAGCACCC
GCACACTCGTTTCACAGGTTGACTTAGGCACACGGAGTTCATTCACCATCTAAGATCGGACCGGA
CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGATGCCACATTTTTCTTCGTCGGG
GCACCATCGTCAGAGCATCATCGGAGAACTCACACCCCCTTAAAGAGCATTTTAGACAACACGCA
AGATCGACAA
Found at i:17513975 original size:26 final size:26
Alignment explanation
Indices: 17513945--17513996 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17513935 TTGGCTTAGT
*
17513945 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
17513971 CATACGGAGTTCATTCCCAGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
17513997 ATCAGACCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:17514872 original size:26 final size:26
Alignment explanation
Indices: 17514836--17514888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17514826 GTCGACTTAG
17514836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17514862 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17514888 G
1 G
17514889 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17515280 original size:897 final size:892
Alignment explanation
Indices: 17513072--17517035 Score: 5238
Period size: 865 Copynumber: 4.5 Consensus size: 892
17513062 GTTGACTTAG
* *
17513072 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACT-GGACCAAGGGTTGTGGCAGCACATGCTGG
* * ** ** **
17513136 GTTCGGGCATGTGTTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
17513201 AACCTGACCGGCGGCATTAGGGTTCCGACAATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCG-CGATCGG-GGGGTCGGGGGGGTGTGCGCACATGATGT
*
17513266 GCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17513331 CA-CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTAAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17513395 AGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
17513460 GTGCATGCCAACAGAAATACAAGGATCACTTCTACCAAGTTTGGGAACAAAACTCCTTCCAAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
17513525 AATTCTAAAAAATCTCGAACCACAAAACATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCTCGAACCATAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17513590 TGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGG
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17513654 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17513719 GCATCCCGTCTTTATGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
645 GCATCCCGTCTCTATGGCCGGCGTAGT--CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * * ** * * * * * *
17513784 GGCATACGGAGTCCATTCCCAATCTAAGATCGGGCCAAACAAAAGGTTGCGGCAGTAGGATTGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGAC
* * * * * *
17513849 AGTACGTAGAGGGGGACCCGACTGATCCTCGGCTTACGCATCCCACCCCTCTAGCCGGTTGAGAG
773 AGCACGCAGAGGGGGACCCGTC-GATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCG
* * *
17513914 CCCGCACGCTCGTTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAA
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * **
17513970 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCACACGAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGG
** *
17514035 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA---TC---G---C--CGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
17514089 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGCGGGGGGTGTGCGCACATGAT
130 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGTC---G-GGGGGGTGTGCGCACATGAT
* *
17514154 GTGCGATGGGTG-TCAGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAACCTCGAGAAC
190 GTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
17514217 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTA
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * **
17514282 AAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAAATGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
17514347 TTTGTACATGCCAACAAAAATACAAGGATTACGTCT-AAGTTTGGGGCCAAAACTCCTTCCGAAA
384 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
17514411 AAATTTTAAAAAATCTCAAACCGTAAAAAATTTTGAAAATCGTGAGAAATAGAAAATGAGTCATC
449 AAATTTTAAAAAATCTCGAACCATAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17514476 TT-CCAATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 TTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17514540 GCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
17514605 GCGCATCCTGTCTCTATGGCCGGCGTAGTGCCAGCACGCCCGCCCGCCCGCTCGTTTCATCGGTT
643 GCGCATCCCGTCTCTATGGCCGGCGTAGT-----C-CGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * * *
17514670 GGCTAAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGCGTTACAGCAGCAGG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGG
* * * * * *
17514735 ATCGACAGCACACAGAGGGGGACCCAG-CGAATGCTTGGCTTGCGCATCTCGCCCCTCTGGCCGG
767 ATCGACAGCACGCAGAGGGGGACCC-GTCG-ATCCTCGGCTTACGCATCCCACCCCTCTGGCCGG
* *
17514799 CTGAGCGCCCGAACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17514862 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATTGGACCAAGGGTTGTGACAGTACATGCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * *
17514927 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
17514992 ACCTGACCAGCAGCATTGGGGTTCCAGTGATCGGGGGG-C-GGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* * * * *
17515055 GATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACTTC-AAAACTAACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17515119 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
17515184 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17515249 GCAAGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAT
389 GCATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * **
17515314 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAA-GAGTCGTCTT-
452 TTTTAAAAAATCTCGAACCATAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
17515377 CCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCA
517 CC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
17515442 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGAT-CACGGCTTACG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17515506 CATCCCGTCTCTCTGGCCGGCGTAGT--G-CCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGC
646 CATCCCGTCTCTATGGCCGGCGTAGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * *
17515568 ATACGGAGTTCATTTCCAGTCTAAGATTAGA-CAGGACTGAGGGTTACGGTAGCATGATCGGCAG
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTACAGCAGCAGGATCGACAG
* * * * *
17515632 CGCGCAGAGGGGGAACCGTCCGATTC-CGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
775 CACGCAGAGGGGGACCCGT-CGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCC
17515696 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17515750 G-AT-C--AG--------A--C------CAGACT-G---AA-GGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGGC
** * *
17515790 TCATGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCTTCGTCGAAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
17515855 CCTGACCGGCAGCATTGGGGTTCCAGCGATCGGGGGGTCGGGGGGGTGTGCGCGCATGATGTGTG
131 CCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
* * *
17515920 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTAACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
17515985 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
17516050 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
17516115 CATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAGA
390 CATGCCAAAAAAAATACAAGGATCACGTCT--CAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A
* * *
17516179 GTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCTCGAACCATAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
17516244 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGT-AAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17516308 TGGCATGCAGAATTATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17516373 ATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGG
647 ATCCCGTCTCTATGGCCGGCGTAGT--CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * *
17516438 CATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACTTAGGGTTGCAGTAGCAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAG
* * * * *
17516503 CACGCAGAGGGGGACCCGGTCGATCCTCGACTTGCGCATCCCACCCTTCTGGCTGGCTGA-CGCT
775 CACGCAGAGGGGGACCC-GTCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCC
* * * * *
17516567 CGTATGCTCCTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17516621 GCATACGGAGTTCATTCCAGTCTAAGAGCAGACTGGACCGAGGGTTATGGCAGCACCTGCTATGG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCT-GGG
* * * *
17516686 C-CGGGCATGTACTGGTGCTGCATTTTTCTTCACCGGGGCACCACCGTCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
17516750 ACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCAAGGGGGTCGGGGGTGTGCACACA
130 ACCTGACCGGCGGCATTGGGGTTCCG-CGATC-GGGGGGTC-----GG--GGGGGTGTGCGCACA
*
17516815 TGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
186 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
17516880 AACTCACACCCCCTTAAAGAGCATTTGACATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGT
251 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
17516945 CTGGAATGGGGACAGTTTTTTCAAATGGTCAGAAAATCTCGTACACTTCGAGTTTTTAGCTGAAT
316 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
17517010 TTTTTTGTGCATGCCAAAAAAAATAC
381 TTTTTTGTGCATGCCAAAAAAAATAC
17517036 TACTTGCGCA
Statistics
Matches: 2706, Mismatches: 274, Indels: 166
0.86 0.09 0.05
Matches are distributed among these distances:
862 113 0.04
863 3 0.00
864 79 0.03
865 293 0.11
866 96 0.04
867 6 0.00
870 1 0.00
871 157 0.06
872 35 0.01
873 2 0.00
875 3 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 9 0.00
887 144 0.05
888 210 0.08
889 136 0.05
890 199 0.07
891 9 0.00
892 276 0.10
893 1 0.00
895 5 0.00
896 98 0.04
897 217 0.08
898 149 0.06
899 121 0.04
900 78 0.03
901 1 0.00
902 3 0.00
903 40 0.01
904 218 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCATAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTATGGCCGGCGTAGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAGCACGCA
GAGGGGGACCCGTCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17516631 original size:26 final size:25
Alignment explanation
Indices: 17516595--17516646 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17516585 GTTGACTTAG
17516595 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
17516621 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17516646 G
1 G
17516647 AGCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17517305 original size:26 final size:25
Alignment explanation
Indices: 17517274--17517331 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
17517264 TGACTCAGGT
17517274 ATACGGATTTCATTCCCAATCTAAG
1 ATACGGATTTCATTCCCAATCTAAG
* * *
17517299 CATACGGAGTTCATTCCTAGTCTAAG
1 -ATACGGATTTCATTCCCAATCTAAG
17517325 AT-CGGAT
1 ATACGGAT
17517332 CGGACCGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 22 0.79
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACGGATTTCATTCCCAATCTAAG
Found at i:17518007 original size:59 final size:60
Alignment explanation
Indices: 17517915--17518151 Score: 329
Period size: 58 Copynumber: 4.0 Consensus size: 60
17517905 TTTTGTGTAG
* *
17517915 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
* * *
17517974 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATA-TTTTTTTGGAAATTT-ACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
* * * **
17518032 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAGATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
17518092 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
17518152 TTTAAAGAAA
Statistics
Matches: 157, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
58 53 0.34
59 47 0.30
60 44 0.28
61 13 0.08
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
Found at i:17518178 original size:14 final size:13
Alignment explanation
Indices: 17518159--17518216 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 13
17518149 TTATTTAAAG
17518159 AAAATAGAATAATA
1 AAAATAGAA-AATA
17518173 AAAATAGAAAAATA
1 AAAATAG-AAAATA
*
17518187 AAGAATAGTAAAACA
1 AA-AATAG-AAAATA
17518202 AAAATA-AAAATA
1 AAAATAGAAAATA
17518214 AAA
1 AAA
17518217 TTAAGATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
12 8 0.21
14 17 0.44
15 14 0.36
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (13 bp):
AAAATAGAAAATA
Found at i:17518225 original size:17 final size:16
Alignment explanation
Indices: 17518203--17518242 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17518193 AGTAAAACAA
*
17518203 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
17518219 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
17518236 AAATAAA
1 AAATAAA
17518243 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:17519391 original size:36 final size:35
Alignment explanation
Indices: 17519334--17519413 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 35
17519324 ACAGAATTAT
*
17519334 ATAAATAAAATACATATAAATATTA-ATAGAAAAATAA
1 ATAAAT-AAATACATAAAAATA-TACATAGAAAAAT-A
* *
17519371 ATAAATAAATA-AGTAAAAATATACATATAATAATA
1 ATAAATAAATACA-TAAAAATATACATAGAAAAATA
17519406 ATAAATAA
1 ATAAATAA
17519414 TAAAATCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
35 12 0.32
36 20 0.53
37 6 0.16
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (35 bp):
ATAAATAAATACATAAAAATATACATAGAAAAATA
Found at i:17519415 original size:24 final size:23
Alignment explanation
Indices: 17519334--17519415 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 23
17519324 ACAGAATTAT
* *
17519334 ATAAATAAAATACATATAAATATTA
1 ATAAA-AATATACATAT-AATAATA
*
17519359 ATAGAAAA-ATAAATA-AATAAATA
1 ATA-AAAATATACATATAAT-AATA
17519382 AGTAAAAATATACATATAATAATA
1 A-TAAAAATATACATATAATAATA
17519406 ATAAATAATA
1 ATAAA-AATA
17519416 AAATCATAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
22 3 0.06
23 12 0.25
24 23 0.48
25 8 0.17
26 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
ATAAAAATATACATATAATAATA
Found at i:17519637 original size:1 final size:1
Alignment explanation
Indices: 17519626--17519685 Score: 57
Period size: 1 Copynumber: 60.0 Consensus size: 1
17519616 AACATTGTCA
* * * * * * *
17519626 TTTTTTGTTTTTTTGTGTTTTTTTTTGTTTTTTGTTTTTTGTTTTGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
17519686 ACCAAAGCTC
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:17519651 original size:20 final size:19
Alignment explanation
Indices: 17519626--17519685 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
17519616 AACATTGTCA
17519626 TTTTTTGTTTTTTTGTGTTT
1 TTTTTTGTTTTTTTGT-TTT
17519646 TTTTTTG-TTTTTTGTTTT
1 TTTTTTGTTTTTTTGTTTT
17519664 TTGTTTTGTTTTTTT-TTTT
1 TT-TTTTGTTTTTTTGTTTT
17519683 TTT
1 TTT
17519686 ACCAAAGCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.16
19 19 0.50
20 13 0.34
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (19 bp):
TTTTTTGTTTTTTTGTTTT
Found at i:17519830 original size:42 final size:41
Alignment explanation
Indices: 17519692--17519988 Score: 407
Period size: 41 Copynumber: 7.1 Consensus size: 41
17519682 TTTTACCAAA
* * *
17519692 GCTCCTCTAAACAGAGGCTCAATGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATT
* *
17519735 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
17519776 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
* *
17519818 GCTCCTCCAAACAAAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* * *
17519859 GCTCCTCTAAACAGAGGCACTACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
*
17519901 GCTCCTCTAAACAGGGGCACCACGACTTTGAAAAATAAA-T
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
17519941 GCTCTTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATT
17519983 GCTCCT
1 GCTCCT
17519989 TTACAATCAT
Statistics
Matches: 226, Mismatches: 24, Indels: 9
0.87 0.09 0.03
Matches are distributed among these distances:
40 25 0.11
41 90 0.40
42 82 0.36
43 29 0.13
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
Found at i:17519837 original size:83 final size:82
Alignment explanation
Indices: 17519692--17519988 Score: 452
Period size: 83 Copynumber: 3.6 Consensus size: 82
17519682 TTTTACCAAA
* * * *
17519692 GCTCCTCTAAACAGAGGCTCAATGAC-TTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-GTAAATTGCTCCTCTAAACAGAGGCACC
*
17519756 ATGACTTTGAAAAATAAAT
64 ACGACTTTGAAAAATAAAT
* *
17519775 CGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCCAAACAAAGGCACCA
1 -GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
17519840 CGACTTTGAAAAATAAATT
65 CGACTTTGAAAAATAAA-T
* *
17519859 GCTCCTCTAAACAGAGGCACTACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGGGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
17519924 GACTTTGAAAAATAAAT
66 GACTTTGAAAAATAAAT
* *
17519941 GCTCTTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCT
17519989 TTACAATCAT
Statistics
Matches: 197, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
82 46 0.23
83 119 0.60
84 28 0.14
85 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAAT
Found at i:17521271 original size:7 final size:7
Alignment explanation
Indices: 17521237--17521296 Score: 50
Period size: 8 Copynumber: 8.0 Consensus size: 7
17521227 TGAATCTCCT
17521237 TTTTTTC
1 TTTTTTC
*
17521244 ATTTTCTC
1 -TTTTTTC
17521252 ATTTCTTTC
1 -TTT-TTTC
17521261 -TTTTTC
1 TTTTTTC
17521267 TTTTTTC
1 TTTTTTC
*
17521274 TTTCTTTT
1 TTT-TTTC
17521282 TTTTTTCC
1 TTTTTT-C
17521290 TTTTTTC
1 TTTTTTC
17521297 ATCATTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
6 4 0.09
7 15 0.34
8 22 0.50
9 3 0.07
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTTC
Found at i:17521277 original size:11 final size:11
Alignment explanation
Indices: 17521253--17521296 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
17521243 CATTTTCTCA
*
17521253 TTTCTTTCTT-
1 TTTCTTTTTTC
17521263 TTTCTTTTTTC
1 TTTCTTTTTTC
*
17521274 TTTCTTTTTTT
1 TTTCTTTTTTC
17521285 TTTCCTTTTTTC
1 TTT-CTTTTTTC
17521297 ATCATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.31
11 13 0.45
12 7 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:17521282 original size:17 final size:16
Alignment explanation
Indices: 17521253--17521292 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
17521243 CATTTTCTCA
17521253 TTTCTTTCTTTTTCTTT
1 TTTCTTTCTTTTT-TTT
17521270 TTTCTTTCTTTTTTTT
1 TTTCTTTCTTTTTTTT
*
17521286 TTCCTTT
1 TTTCTTT
17521293 TTTCATCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTCTTTTTTTT
Found at i:17521286 original size:22 final size:21
Alignment explanation
Indices: 17521236--17521314 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
17521226 TTGAATCTCC
*
17521236 TTTTTTTCATTTTCTCATTTCTT
1 TTTTTTTC-TTTTTTC-TTTCTT
*
17521259 TCTTTTTCTTTTTTCTTTCTTT
1 TTTTTTTCTTTTTTCTTTC-TT
*
17521281 TTTTTTTCCTTTTTTC-ATCATT
1 TTTTTTT-CTTTTTTCTTTC-TT
*
17521303 TTTTTCTCTTTT
1 TTTTTTTCTTTT
17521315 CTCATTTTTC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.19
22 24 0.50
23 15 0.31
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTTCTTTTTTCTTTCTT
Found at i:17521304 original size:19 final size:18
Alignment explanation
Indices: 17521282--17521323 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
17521272 TCTTTCTTTT
*
17521282 TTTTTTCCTTTTTTCATCA
1 TTTTTTCCTCTTTTC-TCA
*
17521301 TTTTTTTCTCTTTTCTCA
1 TTTTTTCCTCTTTTCTCA
17521319 TTTTT
1 TTTTT
17521324 CATCCATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTCCTCTTTTCTCA
Found at i:17521319 original size:21 final size:20
Alignment explanation
Indices: 17521281--17521319 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17521271 TTCTTTCTTT
*
17521281 TTTTTTTCCTTTTTTCATCA
1 TTTTTTTCCTTTTCTCATCA
17521301 TTTTTTTCTCTTTTCTCAT
1 TTTTTTTC-CTTTTCTCAT
17521320 TTTTCATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTTTCCTTTTCTCATCA
Found at i:17521322 original size:17 final size:17
Alignment explanation
Indices: 17521231--17521323 Score: 56
Period size: 17 Copynumber: 5.6 Consensus size: 17
17521221 TTAATTTGAA
*
17521231 TCTCCTTTTTT-TCATTT
1 TCTCATTTTTTCTC-TTT
17521248 TCTCATTTCTTTCT-TTT
1 TCTCATTT-TTTCTCTTT
*
17521265 TCT--TTTTTCTTTCTTT
1 TCTCATTTTT-TCTCTTT
* *
17521281 T-T--TTTTTCCTTTTT
1 TCTCATTTTTTCTCTTT
17521295 TCATCATTTTTTTCTCTTT
1 TC-TCA-TTTTTTCTCTTT
17521314 TCTCATTTTT
1 TCTCATTTTT
17521324 CATCCATTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
14 7 0.12
15 11 0.18
16 5 0.08
17 18 0.30
18 6 0.10
19 13 0.22
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.74
Consensus pattern (17 bp):
TCTCATTTTTTCTCTTT
Found at i:17525306 original size:58 final size:59
Alignment explanation
Indices: 17525183--17525417 Score: 359
Period size: 58 Copynumber: 4.0 Consensus size: 59
17525173 CTTGTGTAGG
17525183 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
17525242 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTGAAAATTTATTTTTAA
* ***
17525300 GAAAAATTGATACTTTCAACTTTTCCTC-AAAAA-CCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
17525358 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTT-GAAA-ATTTATTTTTA
17525418 TTTAAAGAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
57 1 0.01
58 103 0.64
59 42 0.26
60 4 0.03
61 10 0.06
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:17525444 original size:14 final size:14
Alignment explanation
Indices: 17525425--17525482 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
17525415 TTATTTAAAG
*
17525425 AAAATAGAATAATA
1 AAAATAGAAAAATA
17525439 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
17525453 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
17525468 AAAAT--AAAAATA
1 AAAATAGAAAAATA
17525480 AAA
1 AAA
17525483 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:17525452 original size:17 final size:17
Alignment explanation
Indices: 17525432--17525482 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
17525422 AAGAAAATAG
17525432 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
17525449 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
17525467 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
17525483 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:17525491 original size:17 final size:16
Alignment explanation
Indices: 17525469--17525508 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17525459 AGTAAAACAA
*
17525469 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
17525485 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
17525502 AAATAAA
1 AAATAAA
17525509 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:17526565 original size:20 final size:20
Alignment explanation
Indices: 17526540--17526589 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
17526530 TTACAAGAAA
17526540 AATAATAAAAAAATAATAAT
1 AATAATAAAAAAATAATAAT
* *
17526560 AATAATAAATAAATTATAAT
1 AATAATAAAAAAATAATAAT
17526580 ATATAATAAA
1 A-ATAATAAA
17526590 TACAGAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAATAAAAAAATAATAAT
Found at i:17526572 original size:4 final size:4
Alignment explanation
Indices: 17526539--17526688 Score: 54
Period size: 4 Copynumber: 38.8 Consensus size: 4
17526529 ATTACAAGAA
* *
17526539 AAAT -AAT AAAA AAAT -AAT -AAT -AAT -AAT AAAT AAAT -TAT AATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT
* * * * * * *
17526582 ATAAT AAAT ACAG AACT ATAT AAAT AAAAT ACAT ATAA- ACAT TAAT AGAA-
1 A-AAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT AAAT AAAT A-AAT
* *
17526632 AAAT AAAT AAAT AAAT AAAT AAGT AAA- AATAT ACAT ATAAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT AAAT AAAT
17526679 AAAT -AAT AAA
1 AAAT AAAT AAA
17526689 ATACATAAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 30
0.68 0.14 0.19
Matches are distributed among these distances:
3 31 0.28
4 61 0.56
5 16 0.15
6 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:17526578 original size:17 final size:17
Alignment explanation
Indices: 17526558--17526590 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
17526548 AAAAATAATA
17526558 ATAATA-ATAAATAAATT
1 ATAATATAT-AATAAATT
17526575 ATAATATATAATAAAT
1 ATAATATATAATAAAT
17526591 ACAGAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAATATATAATAAATT
Found at i:17527924 original size:25 final size:25
Alignment explanation
Indices: 17527885--17527932 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
17527875 TGACTTAGGC
*
17527885 TACGGAGTTCATCCCAGTCTAAGCA
1 TACGGAGTTCATCCCAATCTAAGCA
17527910 TACGGAG-TCATTCCCAATCTAAG
1 TACGGAGTTCA-TCCCAATCTAAG
17527933 ATCAGACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (25 bp):
TACGGAGTTCATCCCAATCTAAGCA
Found at i:17529197 original size:879 final size:869
Alignment explanation
Indices: 17527909--17530088 Score: 2688
Period size: 879 Copynumber: 2.5 Consensus size: 869
17527899 CAGTCTAAGC
* *
17527909 ATACGGAG-TCATTCCCAATCTAAGATCAGACTA-AACCGAGGGTTGCGGCA-CACATGCT-GGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGAACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * *
17527970 TCAGGCATGTGCTGGTGCCGC-ATTTTCTTCACCAGGGCACCATCGCCG-GAGAACCTGACCGAC
65 TCGGGCATGTGCTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGCCGAGAGAACCTGACCG--
* * *
17528033 AGCATTGGGTTTCGACAATC-GGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
128 AGCATTGGGTTCCGACAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
17528097 TACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAAGTCAACACCCCTTAAAAG
193 TACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAAGTC-ACACCCCTT-AAAG
* * * *
17528162 AGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGATATTTT
255 AGCATTTGATATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
17528227 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGT-GCATGCCAA
319 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGCATGCCAA
* * * * *
17528291 CAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAACCTCCTT-CCGAAAAAATTTTAAAC
384 TAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACT-CTTACCG-AAAAATTTTAAAA
* *
17528355 AATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAG-AAAA-CGAGTCGTCTTGCCATCA
447 AATCCCGAACCAC-AAAAGTTTTGAAAATCGTGAAAAATAGAAAAACCGAGTCGTCTTACCAACA
* * * *
17528418 AACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT-GCAC
511 AACTTCACGTAAAGGCTTAAGGAACCATTGCATGAATTTACAAGCCATAAAAATAGCATTGGCAC
* *
17528482 ACAGAAATATGAAGATGTGCCTATACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCG
576 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
17528547 TCTCTCTGGCCGGCGTAGTGC-CTGCCCG-C-TC-GCCCGCCCGCTCGCTTCGTCGATTGGCTTA
641 -CTCTCTGGCCGGCGTAGTGCTC-GCCCGCCGCCTGCCCGCCCGCTCGCTTCATCGATTGGCTTA
* * *** *
17528608 CACATACGGAGTTCATTCCTAGTCTAAGAT-CAGACCA-GATTGAGGGTTG-CGGCAGCAGGATC
704 CACATACGGAGTTCATTCCAAGTCTAAGATCCA-AACAGGACCAAGGGTTGTCGGCAGCACGATC
* * * *
17528670 AACAGCACGTAGAGGGTGACTCGACCGATTCC-CAGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
768 AACAGCACGCAGAGGGGGACCCGACCGA-TCCTCAGCTTGCGCATCCCG-CCCTCTGGCCGGCTG
* *
17528734 AGCGCCCGCATGCTCGTT-TCGTGGGTTGACTTAGG-CG
831 AGCGCCCGCACGCTCGTTCTAGTGGGTTGACTTAGGACG
* * *
17528771 -TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGGTTGCGGCAGCACATGCTGGGCT
*
17528835 CGGGCATGTGCTGGTGCCACAATTTTCTTTGCCGGGGCACCATCACAGCAGCATCGTCAGAGAAC
66 CGGGCATGTGCTGGTGCCACAATTTTCTTCGCCGGGGCACCAT-----C-GC--CG--AGAGAAC
*
17528900 CTGACCAGAGGCATTAGGGTTCCGGCAATCGGGGCGGTCGGGGGGGTGTGCGCACATGATGTGCG
121 CTGACC-GA-GCATT-GGGTTCCGACAATCGGGG-GGTCGGGGGGGTGTGCGCACATGATGTGCG
* *
17528965 ATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTATCCCTCATCAAACCTTGAGAAGTTCACAC
182 ATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAAG-TCACAC
* *
17529030 CCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTACCAGT-GGCATTAAAGTGTCTGAAATGGG
246 CCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
17529094 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAAGCTGAATTTTTTTGTG
311 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTG
*
17529159 GCATGCCAAAATAAAAATACAAGGATCATGTCTACCAAGTTTGAGGCCAAAACTCTTACCGAAAA
375 GCATGCC--AATAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCTTACCGAAAA
* ** *
17529224 ATTTTAAAAAATCCTGAACTGCAAAAGTTTTGAAAATCGTGAAAAATAGAAAAACCGAGTTGTCT
438 ATTTTAAAAAATCCCGAACCACAAAAGTTTTGAAAATCGTGAAAAATAGAAAAACCGAGTCGTCT
* *
17529289 TACCAAGAAACTTCACGTAAAGGCTTAAGGAACCATTGCATGAATTTACAAGCCATAAAAATGGC
503 TACCAACAAACTTCACGTAAAGGCTTAAGGAACCATTGCATGAATTTACAAGCCATAAAAATAGC
*** *
17529354 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
568 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
17529419 GCATCCCGCTTTCTTGCTGGCGTAGTGGTCGCCCGCCGCCTGCCCGTCCGCTCGTTTCATTGGTT
633 GCATCCCGCTCTCTGGCCGGCGTAGTGCTCGCCCGCCGCCTGCCCGCCCGCTCGCTTCATCGATT
** *
17529484 GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCAAACAGGACCAAGGGTTGTGGGCAGCA
698 GGCTTACACATACGGAGTTCATTCCAAGTCTAAGATCCAAACAGGACCAAGGGTTGTCGGCAGCA
* * ** **
17529549 CGATCAGCAGCACGCGGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCCCGCCCTCTGGCCGG
763 CGATCAACAGCACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCTCTGGCCGG
* * *
17529614 TTGAGTGCCCGCACGCTCGTTCTAGTGTGTTGACTTAGGCATACG
828 CTGAGCGCCCGCACGCTCGTTCTAGTGGGTTGACTTAGG---ACG
*
17529659 AAATTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGT
1 ------A-T----A-C---G------GAGTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGGT
** * *
17529724 TGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
45 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAATTTTCTTCGCCGGGGCACCATC
* * * * *
17529789 GCCGA-CGAACCTGATCGGCAACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACA
110 GCCGAGAGAACCTGA-CCG-AGCATT-GGGTTCCGACAATC-GGGGGGTCGGGGGGGTGTGCGCA
* *
17529853 CATGATGCGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
171 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCG
* * *
17529917 AGAACTCACACCCCCCTAAAGAGCATTTG-TGATTTTACAGGTTTGCTGCCAGTACCCATTAAAG
235 AGAAGTCACA-CCCCTTAAAGAGCATTTGAT-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
17529981 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTG
298 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
17530046 AATTTTTTTGTGG-ATGCCAATAAATATACAAGGATCACGTCTA
363 AATTTTTTTGTGGCATGCCAATAAAAATACAAGGATCACGTCTA
17530089 AGATTGGACT
Statistics
Matches: 1134, Mismatches: 112, Indels: 110
0.84 0.08 0.08
Matches are distributed among these distances:
861 7 0.01
862 36 0.03
863 8 0.01
864 22 0.02
865 19 0.02
870 1 0.00
871 2 0.00
873 2 0.00
875 66 0.06
876 43 0.04
877 70 0.06
878 68 0.06
879 191 0.17
880 65 0.06
881 1 0.00
882 55 0.05
883 44 0.04
884 60 0.05
888 2 0.00
896 24 0.02
898 20 0.02
899 152 0.13
900 75 0.07
901 1 0.00
902 2 0.00
904 3 0.00
905 1 0.00
910 94 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (869 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGCCGAGAGAACCTGACCGAGC
ATTGGGTTCCGACAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCTTAAAGAGCATT
TGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGCATGCCAATAAAAAT
ACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCTTACCGAAAAATTTTAAAAAATCCCGAA
CCACAAAAGTTTTGAAAATCGTGAAAAATAGAAAAACCGAGTCGTCTTACCAACAAACTTCACGT
AAAGGCTTAAGGAACCATTGCATGAATTTACAAGCCATAAAAATAGCATTGGCACACAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTCTCTGGCC
GGCGTAGTGCTCGCCCGCCGCCTGCCCGCCCGCTCGCTTCATCGATTGGCTTACACATACGGAGT
TCATTCCAAGTCTAAGATCCAAACAGGACCAAGGGTTGTCGGCAGCACGATCAACAGCACGCAGA
GGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTCTAGTGGGTTGACTTAGGACG
Found at i:17530409 original size:384 final size:386
Alignment explanation
Indices: 17529719--17530465 Score: 1189
Period size: 384 Copynumber: 1.9 Consensus size: 386
17529709 GACAGGACCA
* *
17529719 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCA
* * *
17529784 CCATCGCCGACGAACCTGATCGGCAACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTG
66 CCATCGCCGACGAACCTGACCGACAACATTGGGGTTCCGACGATCGGGGGGGTCGCGGGGGTGTG
*
17529849 CACACATGATGCGCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACC
131 CACACATGATGCGCGATGGGTGCTGGTACTTGGCCTTATAGTGGCCCCCTATCCCTCATCAAACC
*
17529914 TCAAGAACTCACACCCCCCTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTACCCATTAA
196 TCAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAA
*
17529979 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTT-G
261 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTAG
* * *
17530043 CTGAATTTTTTTGTGGATGCCAATAAATATACAAGGATCACGTCTAAGATTGGACTGAACCG
325 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGATTGGACTGAACCG
* * *
17530105 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGAGCCATATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCA
* * ** * *
17530170 CCATCGTCGGA-GAACCTGACCTACGGCATTGGGGTTTCGATGATCGGGGGGG-C-CGGGGGTGT
66 CCATCG-CCGACGAACCTGACCGACAACATTGGGGTTCCGACGATCGGGGGGGTCGCGGGGGTGT
* * *
17530232 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAA
130 GCACACATGATGCGCGATGGGTGCTGGTACTTGG-CCTTATAGTGGCCCCCTATCCCTCATCAAA
* * *
17530297 CCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATT
17530361 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTA
259 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTA
*
17530426 GGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
324 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
17530466 GTGTCTACCA
Statistics
Matches: 331, Mismatches: 27, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
383 6 0.02
384 178 0.54
385 44 0.13
386 100 0.30
387 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (386 bp):
AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCA
CCATCGCCGACGAACCTGACCGACAACATTGGGGTTCCGACGATCGGGGGGGTCGCGGGGGTGTG
CACACATGATGCGCGATGGGTGCTGGTACTTGGCCTTATAGTGGCCCCCTATCCCTCATCAAACC
TCAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAA
AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGATTGGACTGAACCG
Found at i:17532167 original size:902 final size:895
Alignment explanation
Indices: 17530102--17532416 Score: 2968
Period size: 902 Copynumber: 2.6 Consensus size: 895
17530092 TTGGACTGAA
* * * * *
17530102 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGAGCCATATTTTTCTTCGTCGGG
1 CCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGG
* *
17530167 GCA-C--CATC--G-T--CGGAGAACCTGACCTACGGCATTGGGGTTTCGATGATCGGGG-GGGC
66 GCACCATCATCGAGATCCCGGAGAACCTGA-C-ACGGCATTGGGGTTCCGACGATCGGGGCGGG-
* *
17530223 CGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCC
128 C-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCC
17530288 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
191 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
17530352 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
256 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * ** *
17530417 GATTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTA
321 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * * *
17530482 GGGCCAAAACTCCTTCCGAAAAGGTTTAAAAAAATATCAAACTGCAACAAGTTTCGAAATCTAAA
386 GGGCCAAAACTCCTTCCGAAAA-ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAATCTGAA
* *
17530547 AAATAGAAAACAAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
450 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
17530612 TCACAAGCCATAAAAATGGCATTGGCACATAGAATATGAAGATGTGGCCTAAACCGACCTACCCT
515 T-TCAAGCCATAAAAATGGCATTAGCACAGAGAATATGAAGATGTGGCCTAAACCCACCTACCCT
* * *
17530677 ATTGGATCCACGGCTTGCGCATCCCGTCTCTCTGGTAGACGTAGTGCCGTCCCGCCCGCCCGTCC
579 ATTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAAT--CGTCCCGCCCGCCCGTCC
* *
17530742 GCCCGTTCGTTTCGTCAGTTAGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACAGGAC
642 GCCCGATCGTTTCGTCAGTTAGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACAGAAC
* * * * *
17530807 TGAGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATTGATCCCCAGCTTGCGTAT
707 CGAGGCTACAACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGTAT
* **
17530872 CCCGCCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCCATCTGTTGACTTAGGCATACGGA
772 CCCGCCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCCATCGGTTGACTTAGGCATACAAA
*
17530937 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTGGCCCAGTCCCTAAGATCAGACCTAAAC
837 GTTCATTCCCAGTCTAAGCATACGGAGTTCATT-GCCCAGT-CCTAAGATCAGACCTAAAC
* * *
17530998 CCGAGGGGTTACGGTAGCACATGCTAGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGG
1 CCGA-GGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGG
* * * * * * **
17531063 GGCACCATCGTTGAGAACCC--TG-ACCCGACA--GCATTGGGGTTCCGACAATCGAGGGGCCCG
65 GGCACCATCATCGAGATCCCGGAGAACCTGACACGGCATTGGGGTTCCGACGATC--GGGGCGGG
*
17531123 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCC
128 CGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCC
* * *
17531188 TCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAG
192 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
17531253 TAGCCATTAAAGTGTTTGAAGTGGGGACACTTTTTTCTAATGGTCACAAAATCTTATACACTTCA
257 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** *
17531318 AGTTTTTAGCTAAATGTTTTTGTTAATGCCAACAAAAATACAAGGATCACGTTTA-CAAGTTTGG
322 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
17531382 GGCCAAACCACCTTTCGAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAATCGTGA
387 GGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC--AAAATC-TGA
* * *
17531447 AAAATGGAAAACGAGTCGTCTTGCCATCAAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGA
449 AAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
17531512 ATTTCAAGCCATAAAAATGGCATTAGCATGCAGA-AATATGAAGATGT-GCCTAAACCCACCTAC
513 ATTTCAAGCCATAAAAATGGCATTAGCA--CAGAGAATATGAAGATGTGGCCTAAACCCACCT--
* * * * *
17531575 CACCCTA-TCGATCCACGGCTTGCGCATCCTGTCTTTCTGGCCGATGTAAT-G-CCCGTCCGCCC
574 -ACCCTATTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAATCGTCCCGCCCGCCC
* * * * **
17531637 GTCTGCCCGATCGTTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTTCGTGTCTAAGATCAGAT
638 GTCCGCCCGATCGTTTCGTCAGTTAGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCAGA-
** * * **
17531702 C-GAACCGAGGGCTACAACAGCAGGATCGGTGGCACGTAGAGTGGGACCCGATCGATCGTC-GAC
701 CAGAACCGA-GGCTACAACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAG-C
* * * *
17531765 TTGCGTATCCCG-CCCCTCTAG-TCGGCTGAGCGCCCGCACGCTGGTTT-CGTGGGTTGACTTAG
764 TTGCGTATCCCGCCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCCATCGGTTGACTTAG
* * *
17531827 GCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCTAGT-CTAAGATCTGACC-G
828 GCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCCAGTCCTAAGATCAGACCTA
*
17531889 GA-
893 AAC
* *
17531891 TCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATGTTTCTTCGTCGGG
1 CCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGG
17531956 GCACCAATCATCGGAGCATCGCCGGAGAACCTGAGCAGCGGCATTGGGGTTCCGACGATCGGGGT
66 GCACC-ATCATC-GAG-ATC-CCGGAGAACCTGA-CA-CGGCATTGGGGTTCCGACGATCGGGG-
* *
17532021 CGGGTCGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCTA
124 CGGG-CGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTA
*
17532086 TCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
188 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
17532151 CCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACC
253 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACA
* *
17532215 CTTCGAGTTTTGAGCTGAATGTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
317 CTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
17532280 -TTGGGGCCAAAAACTCCTTCCGAAAAAATTTTAACAAATCTCGAACCGCAAAAGGTTTTGAAGA
382 TTTGGGGCC-AAAACTCCTTCCG-AAAAATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAAAA
* * * *
17532344 TCATGAAAAATAAAAAATGAGTCGT-TTGTCATGAAACTTCACGTAAAGGCTTAAGGGACCATTG
444 TC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
17532408 TATGAATTT
508 TATGAATTT
17532417 NNNNNNNNNN
Statistics
Matches: 1224, Mismatches: 149, Indels: 87
0.84 0.10 0.06
Matches are distributed among these distances:
892 62 0.05
893 7 0.01
894 4 0.00
895 14 0.01
896 6 0.00
897 62 0.05
898 47 0.04
899 213 0.17
900 211 0.17
901 184 0.15
902 224 0.18
903 152 0.12
904 34 0.03
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGG
GCACCATCATCGAGATCCCGGAGAACCTGACACGGCATTGGGGTTCCGACGATCGGGGCGGGCGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCCGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAATCTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCAAG
CCATAAAAATGGCATTAGCACAGAGAATATGAAGATGTGGCCTAAACCCACCTACCCTATTCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAATCGTCCCGCCCGCCCGTCCGCCCGATCG
TTTCGTCAGTTAGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACAGAACCGAGGCTAC
AACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGTATCCCGCCCCC
TCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCCATCGGTTGACTTAGGCATACAAAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTGCCCAGTCCTAAGATCAGACCTAAAC
Found at i:17534269 original size:26 final size:26
Alignment explanation
Indices: 17534218--17534270 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534208 GTTGACTTAG
*
17534218 GCATACGAAGGTCATTCCCAGCCTAA
1 GCATACGAAGGTCATTCCCAACCTAA
* * *
17534244 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGGTCATTCCCAACCTAA
17534270 G
1 G
17534271 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAACCTAA
Found at i:17536017 original size:26 final size:26
Alignment explanation
Indices: 17535987--17536039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535977 GTTGACTTAG
* * *
17535987 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
17536013 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
17536039 G
1 G
17536040 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:17536425 original size:873 final size:876
Alignment explanation
Indices: 17533417--17536676 Score: 3957
Period size: 876 Copynumber: 3.7 Consensus size: 876
17533407 NNNNNNNNNN
*
17533417 TCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGAA
1 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCA---TC--AGC-T--CCGGAGAA
* * * **
17533482 CCTAACCGACGGCATTAGGGTTCCGGCGATCGGGAAGGCCGGGGGGGGTGTGCGCACATGATGA-
58 CCTGACCGGCGGCATTAGGGTTCCGACGATC----A-G--GGGGGCCGTGTGCGCACATGAT-AT
* *
17533546 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCTTATCCCTCATCAAACCTCGAGAACTCA
115 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17533611 CACCCTCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
180 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17533676 TGGAGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
245 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * * * *
17533741 GTGCATGCCAACAACAATACAAGGATCACGTATAGCAAGTTTGGGG------------CC-AAAA
310 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
17533793 AATTTTTAAAAATCCGGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
375 AATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
17533858 TGCCATGAAACTTGACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
440 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17533923 AGTGGCTTGCA-AAATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
505 ATTGGC--ACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
17533987 GCGCATCCTATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGGTCGCTTGTTTCGTCGGTT
568 GCGCATCCCGTCTCTCTGGCCGACGTA------G--TGCCCGCCC---CGCTTGTTTCGTCGGTT
* * * * * *
17534052 GGCTTAGGCATATGGTGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGG
622 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGG
* * * * * **
17534117 ATCGGTAGCACATAGAGGGGGACC-CGACCAATCCCTGGCTTGTGCATCCCGCCCCTCTGGCTAG
687 ATCGGTAGCACGTAGAGGGGGACCTAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
17534181 CTAAGCGCCCGCACACTCGTTCCGTGGGTTGACTTAGGCATACGAAGGTCATTCCCAGCCTAAGC
751 CTAAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
17534246 ATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTACGACAGCACATGTTTGGC
816 ATAC-GAGTTCATTCCC-ATCTAAGATCGGACCGGAC-GAGGGTTGCGACAGCACATGTTGGGC
* *
17534310 TCGGGCATGTGCTAGTGCCGCATTTTTCTTTGCCGGGGTACCATCGCCAGAGCATCTCCGGAGAA
1 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCAT---C--AG---CTCCGGAGAA
* *
17534375 CCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAAGGGGCGGTGTGCGCACATGATGT
58 CCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGG-C------C-GTGTGCGCACATGATAT
* *
17534440 GCAAT-GG-G-TGGTACTTGGCCCTTATATTGG-CCCCTATCACTCATCAAACCTCGAGAACTCA
115 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17534501 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAA
180 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17534566 TGGGGACACTTTTTTCAAATGGTAAAAAAAAAATCTTGTACATTTCGAGTTTTCAGCTGAATTGT
245 TGGGGACACTTTTTTCAAATGGT---CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* * *
17534631 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGA
307 TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
17534696 AAAAATTTTAAAAAAT-CTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAATT
372 AAAAATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
17534760 TTCTTGCCATGAAACTTCACGTGAAGGC-TAAAGGGACCATTTTATGAATTTACAAGCCATAAAA
436 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAA-GGACCACTGTATGAATTTACAAGCCATAAAA
* * *
17534824 ATGGCCTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
500 ATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
17534889 CTTGCGCATCCCGTCTCTAT-GCCCAGCGTAGTGCCCGCCCGCCCACCAACCTGCTTGTTTTGTC
565 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----GCCCG----CC--CC-GCTTGTTTCGTC
*
17534953 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAG
618 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAG
* * * * * *
17535018 CAGGATCGGTAGCACGCAGAGAGGGACCTGGCCGATGCCCGGGTTGCGCATCCCG-CACTCTGGC
683 CAGGATCGGTAGCACGTAGAGGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
17535082 CGGCTCAA-CACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
748 CGGCT-AAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
17535146 AAG-AT-C--G---------------GATCGGACC--A--AGGCTTGCGACAGCACATGCTGGGC
812 AAGCATACGAGTTCATTCCCATCTAAGATCGGACCGGACGAGGGTTGCGACAGCACATGTTGGGC
* *
17535188 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCTGGAGAA
1 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCA---TC--AGC-TC-C-GGAGAA
* * * * *
17535253 CCTGACCGACGGCTTTAGGGTTCCGACGATCAGGGGCGCCAGGGGGTGTGCGAACATGATGTGCG
58 CCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGGCC-----GTGTGCGCACATGATATGCG
* *
17535318 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGGACTCACAC
118 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
17535383 CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGG
183 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
17535448 GGACACTTTTTCCAAATGGTGACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTATG
248 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATG
* * * * *
17535513 CATGGCAAAAAAAATACAAGGATCATGTCTTCTAAGTTTGGGGGCAAAACTCCTTCCGAAAAAAT
313 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
17535578 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
378 TTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
17535643 CGTGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAACCATAAGAATGGCATT
443 CATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
*
17535708 GGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
508 GGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
17535773 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCGCTTGTTTCATCGATTGGCTTAGGCATACGGA
573 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
17535837 GTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGA
638 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGA
* * * **
17535902 GGGGGACCTAGCTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTTGCACGCT
703 GGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCT
* * *
17535967 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGAAGTTCATTCCC
768 CGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCC
* * *
17536032 ACTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACACGTTGGGC
832 A-TCTAAGATCGGACCGGA-CGAGGGTTGCGACAGCACATGTTGGGC
* * * *
17536079 TCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATC-G-T-CGGAGAACATGATCG
1 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCAGCTCCGGAGAACCTGACCG
* * * *
17536141 GCGGCATTGGGGTTCCGGCGAT-TGGGGGGCC-TGTGCGCACATGATATGCGATGAGTGCTGGTA
66 GCGGCATTAGGGTTCCGACGATCAGGGGGGCCGTGTGCGCACATGATATGCGATGGGTGCTGGTA
*
17536204 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGC
131 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
17536269 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTTAAATGGGGACACTTTTTTC
196 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
17536334 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
261 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAA
* * *
17536399 ATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCGGAAAAAATTTTAAAAAATCCC
326 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* * * *
17536464 GAACCACAAAAA-TTTTAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTGAC
391 GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *** *
17536528 GTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAAT
456 GTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAAT
17536593 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
521 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
17536658 GCCGACGTAGTGCCTGCCC
586 GCCGACGTAGTGCCCGCCC
17536677 TCCCGCCCGC
Statistics
Matches: 2059, Mismatches: 214, Indels: 208
0.83 0.09 0.08
Matches are distributed among these distances:
864 119 0.06
865 69 0.03
866 2 0.00
867 2 0.00
870 1 0.00
871 1 0.00
872 187 0.09
873 282 0.14
875 22 0.01
876 288 0.14
877 12 0.01
878 126 0.06
879 117 0.06
880 30 0.01
881 3 0.00
883 10 0.00
885 1 0.00
886 14 0.01
888 4 0.00
890 109 0.05
891 81 0.04
892 1 0.00
893 162 0.08
894 19 0.01
895 1 0.00
896 1 0.00
897 1 0.00
899 2 0.00
901 5 0.00
902 1 0.00
903 2 0.00
904 71 0.03
905 192 0.09
906 120 0.06
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCAGCTCCGGAGAACCTGACCG
GCGGCATTAGGGTTCCGACGATCAGGGGGGCCGTGTGCGCACATGATATGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCTAGCC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCATCTAAGATCGGAC
CGGACGAGGGTTGCGACAGCACATGTTGGGC
Found at i:17538397 original size:704 final size:710
Alignment explanation
Indices: 17537036--17538790 Score: 2153
Period size: 704 Copynumber: 2.5 Consensus size: 710
17537026 TACCTGGCAT
*
17537036 AAAAAGTTTTAAAAATCATCG-AAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAG
1 AAAAAGTTTTAAAAATCAT-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
** * *
17537100 GCTTAAAAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATAGGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
17537165 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCTGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTA--CTGC
* * * * *
17537230 GTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTC
193 GTAGT-CCTG-CAG-CCGCCCGCCTGCTCATTTCGTCGGTTGACTTAAGCATACAGAGTTCATTC
** * * * *
17537295 CCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGTAGGATCAACAGCACGTCGAGGGGGACC
255 CCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCAGCATCAACAGCACGGCGAGGCGGACC
* ** *
17537360 CGATCGATCCCCGACTTACGCACCATCATCGGAGCATCGTCAGAGAACCTGACTAGCGACATTGG
320 CGATCGATCCCCGACTGACGCACCATCATCGGAGCATCCCCAGAGAACCTGACCAGCGACATTGG
* *
17537425 GGTTCCGGCGATCGGGGGCACTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
385 GGTTCCGGCGATCGGGGG-ACGGGGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGG
* * * * *
17537490 CCCTTATATTGGCCCCCTAACCCTCATCAGACTTTGAGATCTCACACCCCCTTAAAGAGAATTTG
449 CCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTA
*
17537555 AGATTTTTCAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
514 AGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
17537620 GTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACA
579 GTCACAAAATCTTGTACACTTCGAGGTTTTACCTGAAATTTTTTATGCATACCAACAAAAATAAA
* * * * * * *
17537685 AGGATCACGTCTAACGAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTAAAAAAATCTCTAACC
644 AAGATCACGTCGAACAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTAAAAAAATCCCAAACC
17537750 GC
709 GC
* * *
17537752 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCACGAAACTTCACGTGAAGG
1 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
17537817 CTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATACAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
17537882 TGTGCCTAAACCCACCTACCACCTTATCGATCCCCGGCTTGCGCATTCTG-C-CCCT-CTG-GTC
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTACTGCGTA
* * *
17537943 GT-CTG-AG-TGCCTGCAC-GCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGT
196 GTCCTGCAGCCGCCCGC-CTGCTCATTTCGTCGGTTGACTTAAGCATACAGAGTTCATTCCCAGT
* * *** * *
17538004 CTAAGATCAAACC-AGACCGAGTGTTGCGACAGCA-CATGATGGGCTCGG-GCATGTGCTG-CTG
260 CTAAGATCAAACCGA-ACCGAGGGTTGCGACAGCAGCATCAACAGCACGGCG-A-G-GCGGAC--
*** ** * ** * * *
17538065 CCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCCCCAGAGAACTTGACCGGCGGCATT
319 CCG-ATCGATCCCCGACTGACGCACCATCATCGGAGCATCCCCAGAGAACCTGACCAGCGACATT
* * *
17538129 GGGGTTCCGGCGATCGGGGG-GGGGGGGGTGTGAGCACATGATGTGTGGTGGGTGGTGGTACTTG
383 GGGGTTCCGGCGATCGGGGGACGGGGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTG
* * *
17538193 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTT
448 GCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTT
* *
17538258 AAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
513 AAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
17538323 GGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGCATACCAACAAAAATAA
578 GGTCACAAAATCTTGTACACTTCGAGGTTTTACCTGAAATTTTTTATGCATACCAACAAAAATAA
* * *
17538388 AAAGATCACGTCGACCAAGTTTGGGTCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCAAAC
643 AAAGATCACGTCGAACAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTAAAAAAATCCCAAAC
*
17538453 CGT
708 CGC
* *
17538456 AAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
17538521 CTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
17538585 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTACCCGGTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTA--CTGCG
* * * * * * * * ** * *
17538650 TAGTGCCCGCCCGTCCGCCTGCCCGTTCGTTTCATCGATTGGTTTAGGCATACGGAGTTCATTCC
194 TAGT-CCTG-CAG-CCGCCCGCCTGCTCATTTCGTCGGTTGACTTAAGCATACAGAGTTCATTCC
* * * * * *
17538715 CAGTCTAAGATCAGATC-AGACCGAGGGTTGC-AGTAGCAGGATCGACAGCAC-GCAGAGGGGGA
256 CAGTCTAAGATCAAACCGA-ACCGAGGGTTGCGA-CAGCAGCATCAACAGCACGGC-GAGGCGGA
17538777 CCCGATCGATCCCC
318 CCCGATCGATCCCC
17538791 AGCTTGCGCA
Statistics
Matches: 878, Mismatches: 134, Indels: 58
0.82 0.13 0.05
Matches are distributed among these distances:
702 1 0.00
703 93 0.11
704 430 0.49
705 6 0.01
706 62 0.07
707 7 0.01
708 5 0.01
709 4 0.00
710 4 0.00
711 5 0.01
712 5 0.01
713 4 0.00
714 7 0.01
715 75 0.09
716 169 0.19
717 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (710 bp):
AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTACTGCGTA
GTCCTGCAGCCGCCCGCCTGCTCATTTCGTCGGTTGACTTAAGCATACAGAGTTCATTCCCAGTC
TAAGATCAAACCGAACCGAGGGTTGCGACAGCAGCATCAACAGCACGGCGAGGCGGACCCGATCG
ATCCCCGACTGACGCACCATCATCGGAGCATCCCCAGAGAACCTGACCAGCGACATTGGGGTTCC
GGCGATCGGGGGACGGGGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTAAGATTTT
ACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGGTTTTACCTGAAATTTTTTATGCATACCAACAAAAATAAAAAGATCA
CGTCGAACAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTAAAAAAATCCCAAACCGC
Found at i:17538889 original size:26 final size:26
Alignment explanation
Indices: 17538853--17538908 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17538843 TGGGTTGACT
17538853 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
17538879 TAAGCATACGAAGTTGATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
17538905 TAAG
1 TAAG
17538909 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:17539790 original size:26 final size:26
Alignment explanation
Indices: 17539754--17539806 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17539744 GTTGACTTAG
17539754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17539780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17539806 G
1 G
17539807 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17540688 original size:26 final size:26
Alignment explanation
Indices: 17540652--17540703 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540642 TTGACTTAGC
* *
17540652 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGCCTAAG
*
17540678 CATAGGGAGTTCACTCCCAGCCTAAG
1 CATACGGAGTTCACTCCCAGCCTAAG
17540704 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGCCTAAG
Found at i:17541450 original size:897 final size:895
Alignment explanation
Indices: 17537979--17542369 Score: 5486
Period size: 897 Copynumber: 4.9 Consensus size: 895
17537969 TGGGTTGACT
* * * * * *
17537979 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGTGTTGCGACAGCACATGAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * **
17538044 GGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCCCAG
66 GGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTC-CCTGGGCACCATCATCGGAGCATCGTCAG
* *
17538109 AGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG--GGGGGGTGTGAGCACATGATG
130 AGAAC-TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
17538172 TGTGGTGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTC
194 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17538237 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17538302 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
17538367 TATGCATACCAACAAAAATAAAAAGATCACGTCGACCAAGTTTGGGTCCAAAAAT-CTTTCCGAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-C-AA
* * *
17538431 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
17538496 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17538560 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* ** * * * *
17538625 GCACATCCCGTCTCTCTACCCGGTGTAGTGCCCGCCCGTCCGCCTGCCCGTTCGTTTCATC-GAT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-T-CGCCCGCCCGCTCGTTTCGTCAG-T
* * * *
17538689 TGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGCAGTAGCA
707 TGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTACGGCAGCA
* * * * *
17538753 GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCG
771 GGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCG
** * * *
17538818 GTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTC
835 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
17538879 TAAGCATACGAAGTTGATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
17538944 GGGCTTGAGCAAT-TGCTGGTG-TCACATTTTTCTT-CATCGGGTCACCATCGTCGGAGCATCGT
66 GGGCTCGAGC-ATGTGCTGGTGCT-GCATTTTTCTTCCCT-GGG-CACCATCATCGGAGCATCGT
* * * * * * *
17539006 CGGAGAACCTGACCGGCGGCATTGGGATTCCGGCAATCGGGGGGGTCGGGGGG-GTGCACAAATG
127 CAGAGAA-CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * * * *
17539070 ATGTGCGATGGGTGCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTAATCAAACTTCGAGAA
191 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
17539135 CTCACACCCCCTTAAAGAGCATTTTATATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
17539200 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *** * *
17539265 TTTTGTGCATCCCAACAAAAATACAAGAATCACGTTTACCAAGTTTGGGGTGGAAATTCCTTCCA
386 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * * *
17539330 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTACGAAAAATAGAAAATGAGCC
450 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
17539395 GTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * ** *
17539460 TGGCATTGGCATGCAGAAATATGAAGATGTGCCGAAACCCTCCTACCACCCTATCGATCGGTTAG
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CATGG
* * * * * * *
17539525 CTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTACCCGCCCGCCCGCCCGTTCATTTCGTCGGTTG
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * * * *
17539590 GCTTAGGCATACGGAGTTCATTTCAAGTCTAAGATCGGA-TCGGATCAAGGGTTACGGCAGCAGG
709 GTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTACGGCAGCAGG
* * * ** * *
17539654 ATCGGTAGTACGTAGAGGGGGACCCGACCGATCCCTGGCTCACGCATCCAGCCACTC-GGCCGAC
773 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGGCCGAC
* *
17539718 TGAGAGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
17539777 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * ** * * ** * * *
17539842 GGGCTCGGGCATATGCTGGCGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGATCATCATCGG
66 GGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTC-CCTGGGCACCATCATCGGAGCATCGTCAG
* * ** * *
17539907 AGAAGTTGACCAGCGGCATTGGCTTTTCGACGATC-GGGGGGCCGAGGGGTGTGCGCACATGATG
130 AGAA-CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
17539971 TGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTC
194 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
17540036 ACA-CCCCTTAAAGAGCATTTGAGATTGCACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17540100 TTAGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTAAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
17540164 TGTGCATG-CAAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
389 TGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AA
* ** * * * * *
17540228 AAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTGAAAATCCTGAAAAATAAAAAATGAGTAGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
17540293 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGAGTATGAATTTACATGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * * *
17540358 GGAATGGCACATAGAAATATGAAGATATGCCTAAACCCACCTAGCACCCTATCGATCCAAGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * * * * **
17540423 GTGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTTATC
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTGGT-
* ** *
17540488 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATGGGACT-AGACCGAGGGTTACGGCAGTAGGAT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTACGGCAGCAGGAT
* * * ** *
17540552 CGGTAGCACTTTGAGGGGGACGTGACCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGACTG
775 CGGCAGCACGTAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
17540617 AGCGGCCGCACGCTCGTTTTGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTC
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
17540674 TAAGCATAGGGAGTTCACTCCCAGCCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
17540739 GGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCCCTGGGCACCATCATCGGAGCATCGTCAGA
66 GGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCCCTGGGCACCATCATCGGAGCATCGTCAGA
17540804 GAAGCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 GAA-CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
17540869 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17540934 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17540999 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAATGTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
17541064 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
* ** * * * *
17541129 TGTTTTAAAAAATCCCGAATAGCAAATAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCT
455 -ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
17541194 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
17541259 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTGTTGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * *
17541324 GCATCCCGTGTCTCTGGCCGGCGTAATGCCCGCTCGCCCGTCCGCTCGTTTCGTCAGTTGGTTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTGGTTTA
* ** * **
17541389 GGCATACAGCCTTCATTCCCAG-CTAAGATCAGACTGAACTGAGGGTTGTGGCAGCAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGCAGCAGGATCGGC
* * * * * * **
17541453 AGCACGCAGAAGGGGATCCGACTGATCCCCAGCTTGCGCAGCCTACCCCTCTGGCC-AGCTGAGC
779 AGCACGTAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGC
* * ** *
17541517 GCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTG
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
17541571 TAAGCATATGGAGTTCATTCACAGTCTAGGATCAGACCGGACCGAGGGTTACGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
17541636 GGGCTCGAGCATGTGCTGGTG-TCGCATTTTTCTT--C---G------C--CGGAGCATCG-C--
66 GGGCTCGAGCATGTGCTGGTGCT-GCATTTTTCTTCCCTGGGCACCATCATCGGAGCATCGTCAG
* *
17541684 ---A-T----------A-TGGGGTTCTGACGATCGGGGGGGTC-GGGGG-GTGCGCACATGATGT
130 AGAACTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
17541732 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17541797 CACCCCCTTAAAGAGCGTTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * * *
17541862 TCAGGACACTTTTTTCAAATGGTCAAAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
17541927 TTCGCTTGCCAAAAAAAATACAAAGATCATGTCTACTAAGTTTGGGCCCAAAAGTCCTTTCGAAA
390 GT-GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAA
* * *
17541992 AAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
17542057 TTGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
17542122 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * *
17542187 CGCATCCCGTCTCTCTAGTCGACATAGTGCCTGGTCGCTCGCCCGCTCGCTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC----CGCTCGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * * *
17542252 GCTTAGGCATACGAAGATCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACAGCAGCAGGA
709 GTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGCAGCAGGA
* *
17542317 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCC
774 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCC
17542370 ACCCGCCTGC
Statistics
Matches: 3035, Mismatches: 415, Indels: 113
0.85 0.12 0.03
Matches are distributed among these distances:
863 196 0.06
864 259 0.09
865 28 0.01
866 1 0.00
868 49 0.02
869 73 0.02
876 1 0.00
878 1 0.00
883 1 0.00
884 10 0.00
886 1 0.00
892 1 0.00
895 60 0.02
896 394 0.13
897 557 0.18
898 378 0.12
899 428 0.14
900 141 0.05
901 343 0.11
902 81 0.03
903 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCCCTGGGCACCATCATCGGAGCATCGTCAGA
GAACTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGTTGGTTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGCAGCAGGATCGGCAG
CACGTAGAGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:17542596 original size:26 final size:26
Alignment explanation
Indices: 17542560--17542612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17542550 GTTGACCTAG
*
17542560 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
17542586 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATTCACAGTCTAA
17542612 G
1 G
17542613 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCACAGTCTAA
Found at i:17543484 original size:26 final size:26
Alignment explanation
Indices: 17543455--17543507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17543445 GTTGACTTAG
*
17543455 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17543481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17543507 G
1 G
17543508 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17545050 original size:26 final size:26
Alignment explanation
Indices: 17544998--17545050 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17544988 GTTGGCTTAG
*
17544998 GCATACAGAGTCCATTCCCAATCTAA
1 GCATACAGAGTCCATTCCCAATATAA
* * * *
17545024 GCATACGGAGTTCATTCTCAGTATAA
1 GCATACAGAGTCCATTCCCAATATAA
17545050 G
1 G
17545051 ATCAGACTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAATATAA
Found at i:17546621 original size:26 final size:25
Alignment explanation
Indices: 17546592--17546670 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
17546582 GTTGACTTAG
17546592 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17546618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17546644 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
17546670 G
1 G
17546671 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 1 0.02
26 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:17547966 original size:26 final size:26
Alignment explanation
Indices: 17547929--17547978 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17547919 GACTTAGGCA
*
17547929 TACGGAGATCATTCCTAGTCTAAGCT
1 TACGGAGATCATTCCCAGTCTAAGCT
*
17547955 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGATCATTCCCAGTCTAAG
17547979 ATTGAACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGATCATTCCCAGTCTAAGCT
Found at i:17548849 original size:26 final size:25
Alignment explanation
Indices: 17548820--17548898 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
17548810 GTTGACTTAG
17548820 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17548846 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
17548872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17548898 G
1 G
17548899 ATCAAATTGG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.02
26 49 0.96
27 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:17549775 original size:26 final size:26
Alignment explanation
Indices: 17549746--17549798 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17549736 GTTGACTTAG
17549746 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17549772 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17549798 G
1 G
17549799 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17549943 original size:900 final size:898
Alignment explanation
Indices: 17547740--17550519 Score: 4236
Period size: 900 Copynumber: 3.1 Consensus size: 898
17547730 ACGCTCGCCT
* * * *
17547740 GCCCGCTCGTTTCGTCTGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
* * * * * * * * * * * * *
17547805 TCGAGGGTTACGGCAGCAGGATTGGCATCACGCAGAGGGGAACCCTA-CCGATCCCTGGCTTGC-
66 CCAAGGGTTGCGGCAGTAGGATCGGTAGCATGAAGAGGGGGACCC-AGTCGATCCCCGGGTT-CT
** * ** ** * * * *
17547868 GCATCCCACCATTTTGGCAAGCAGAGCACCCGCATGCTCGTTTGGTGGGTTGACTTAGGCATACG
129 GCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACA
* * * ** * * *
17547933 GAGATCATTCCTAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGT
194 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGT
* * * * ** *
17547998 TGCA--GCAGCACATGCTGGGC-TCAGGGATGTGCTGGTGCTGCATTTTTCTTCG-CCAGGGCAC
259 TGCAGTGTAGCACATGTTGGGCTTGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCCA-CGCAC
* * * * * *
17548059 CATCGCCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGG-TC
322 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTG-GGGGGCT-
* * * * *
17548123 GGGGGGTGTGCGCACATGATGTGCAATGGGTGATTGTACTTGGCCCTTATATTGGCCCCCTATCC
385 GGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-TCCCTCTCC
* *
17548188 CTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
449 CTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
*
17548253 GTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTGCAAATGGTCACAAAATCTTGTACACTT
514 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATTGTCACAAAATCTTGTACACTT
* * * * *
17548317 CGAGTTTTTAGCTGAATTTGTTTGTGCACGCC-AAAAAAAATACAAAGATCACGTCTACCAAGTT
578 CGAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACAAGGATCATGTCTACCAGGTT
* * * ** **
17548381 TGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
643 TGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCGT
** * * *
17548446 GAAAAATTCAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATG
708 GAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
17548511 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAAT
773 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAAT
*
17548576 CACCCTATTGATCCATGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCG---CCC
838 CACCCTATTGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCCCCC
*
17548634 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
1 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
*
17548699 CCAAGGGTTGCGGTAGTAGGATCGGTAGCATGAAGAGGGGGACCC-GATCGATCCCCGGGTTCTG
66 CCAAGGGTTGCGGCAGTAGGATCGGTAGCATGAAGAGGGGGACCCAG-TCGATCCCCGGGTTCTG
*
17548763 CATCCCACCCCTCTAGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAG
130 CATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGAC-T-----T--AG
17548828 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
187 -G--------CA---T-A-C--A-G-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
17548893 TCTAAGATCAAATTGGATCGAGGGTTGCAGTGTAGCACATGTTGGGCTTGAGCATGTGCTGGTGC
234 TCTAAGATCAAATCGGATCGAGGGTTGCAGTGTAGCACATGTTGGGCTTGAGCATGTGCTGGTGC
*
17548958 CACATTTTTCTTCGTCGACGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
299 CACATTTTTCTTCGTCCACGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
17549023 GGTTCCGGTGATTGGGGGGCTGGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGG
364 GGTTCCGGTGATTGGGGGGCT-GGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGG
*
17549088 CCCTTATATTGGTCCCTCTCCCTCATGAAACCTCGAGAACTCACAACCCTTTAAAGAGCATTTGA
428 CCCTTATATTGGTCCCTCTCCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGA
*
17549153 GATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTG
493 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTG
17549218 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACA
558 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACA
17549283 AGGATCATGTCTACCAGGTTTGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCC
623 AGGATCATGTCTACCAGGTTTGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCC
17549348 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAG
688 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAG
17549413 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
753 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
17549478 ATGTGCCTAAACCCACCAATCACCCTATTGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGC
818 ATGTGCCTAAACCCACCAATCACCCTATTGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGC
*
17549543 ATAGTGCCCGCCCACCC
883 GTAGTGCCCGCCC-CCC
* *
17549560 GCCCACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGATCGGA
1 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
17549625 CCAAGGGTTGCGGCAGTAGGATCGGTAGCATGAAGAGGGGGACCCAGTCGATCCCCGGGTTCTGC
66 CCAAGGGTTGCGGCAGTAGGATCGGTAGCATGAAGAGGGGGACCCAGTCGATCCCCGGGTTCTGC
17549690 ATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGA
131 ATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGA
17549755 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTG
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTG
*
17549820 CAGTGTAGCACATGTTGGGCTTGAGCATGTTCTGGTGCCACATTTTTCTTCGTCCACGCACCATC
261 CAGTGTAGCACATGTTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGTCCACGCACCATC
17549885 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCTGGGGGG
326 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCTGGGGGG
*
17549950 TGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGTCCCCTCTCCCTCATG
391 TGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGT-CCCTCTCCCTCATG
*
17550015 AAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
455 AAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
17550080 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTT
520 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTT
*
17550145 TTAGCTGAATTTTTTTGTGCACACAAAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGCCA
585 TTAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGCCA
17550210 AAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAAT
650 AAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAAT
17550275 AGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
715 AGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17550340 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
780 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTA
* * * * *
17550405 TCGATCCACGACTTGCGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCCCGCCC
845 TTGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCC-CCC
*
17550460 GCCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
17550520 CCAGACCGAC
Statistics
Matches: 1735, Mismatches: 109, Indels: 78
0.90 0.06 0.04
Matches are distributed among these distances:
893 1 0.00
894 149 0.09
895 1 0.00
899 55 0.03
900 690 0.40
901 1 0.00
902 3 0.00
903 1 0.00
904 1 0.00
905 1 0.00
906 1 0.00
909 2 0.00
911 2 0.00
914 1 0.00
915 1 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 1 0.00
920 60 0.03
921 159 0.09
922 417 0.24
923 4 0.00
925 1 0.00
926 178 0.10
927 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
CCAAGGGTTGCGGCAGTAGGATCGGTAGCATGAAGAGGGGGACCCAGTCGATCCCCGGGTTCTGC
ATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTG
CAGTGTAGCACATGTTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGTCCACGCACCATC
GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGCTGGGGGG
TGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTCTCCCTCATGA
AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGCCAA
AACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATA
GAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTAT
TGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCCCCC
Found at i:17552132 original size:26 final size:26
Alignment explanation
Indices: 17552094--17552165 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
17552084 TTAGGCATTC
*
17552094 GGAGTTCATTCCCAGTCTAACCGTAT
1 GGAGTTCATTCCCAGTCTAACCATAT
*
17552120 GTAGTTCATTCCCAGTCTAACCATAT
1 GGAGTTCATTCCCAGTCTAACCATAT
17552146 GGAGTTCATTCCCAGTCTAA
1 GGAGTTCATTCCCAGTCTAA
17552166 GATCAGACCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAACCATAT
Found at i:17553932 original size:26 final size:26
Alignment explanation
Indices: 17553896--17553947 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17553886 TGACTTAGGC
* *
17553896 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
17553922 ATACGAAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
17553948 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGA
Found at i:17557037 original size:895 final size:894
Alignment explanation
Indices: 17551585--17557509 Score: 7270
Period size: 895 Copynumber: 6.6 Consensus size: 894
17551575 CAGGTTTGCT
* * * * *
17551585 AAAATCTTATACACTTTGGGTTTTTAGCTGAATTTTTCTGTGCATGCCAACAAAAATACAAAGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
17551650 CATGTCTACCAAGTTTGGGGCTAAAACA-CCATCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
66 CACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* * * *
17551714 AAAGTTTTAAAAATC-GTGAAAAATATAAAACGTGTCGTCTTGCCATGAAACTTTACGTGAAGGC
130 AAAGTTTTGAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
17551778 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGAT
194 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * ** * * *
17551843 GTGCCTAAACCCACCTACCACCCCATCGATTCGTGGCTTGCGCATCCCGTTTTTTTGGCCAGCGT
259 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGT
* * * **
17551908 AGTGCCCGCCCGCTCGCTCGCCCGCTAGTTTCCTCGGTCAGCTTAGGCATACGGAGTTCATTCCC
324 AGT----GCCCG--C-C-CGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * * * *
17551973 GGTCTAAGATCAAACTGGACTGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCG
381 AGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCG
* ** ** * * * * ** **** * * * *
17552038 AC-CCTCTGGCTAGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTAACTTAG-GCATTCGGA-GTT
446 GCTGATC-CCCGA-CT-TGCG-CATCCCGC-C-CCTC-T-GGCCGGCTGAGCGC--CCGCACGCT
*** ** * * * * * **
17552100 CA-TTC-CCAG-T--C-TAACCGTATGTAGTTCATTCCCAGTCTAACCATATGGAGTTCATTCCC
501 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCC
* * * * * *
17552159 AGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTCGGCTCGGGCATGTGCTGGTGC
566 AGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * ***
17552224 CGCATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCACTGGAGAACCTGACCGACGGCATCAA
631 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* ** * * *
17552289 GGTTTCGATGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
696 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGG
* *
17552354 CCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
761 CCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
17552419 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATG
825 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
17552484 GTCAC
890 GTCAC
* * *
17552489 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAAAACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
17552554 CATGTCTAACAAGTTTGGAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
** * * * * *
17552619 AAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCT
131 AAGTTTTGAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
17552684 AAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
196 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* *
17552749 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAG
261 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAG
* * *
17552814 TGCCCGCCCGCCCGCCTGGACGTTCGTTTCGTCGGCTGACTTAGGCATACGGAGTTCATTCCCAG
326 TGCCCGCCCG--C-CC--G-C--TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
17552879 TCTAAGAT-----CAGACCGAGGGTTACAGCAGCAGGATTGGTAGCATGCAGA-ATGGGACCCGG
383 TCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGA-GGGACCCGG
* * * * * *
17552938 CTGAT-CCCGGCTTACGCATCCCGCCCCTTTGGCCGGCTGAGCACTCGCACGCTCGTTTCGTGGG
447 CTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* *
17553002 TTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
512 TTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * *
17553067 GGACCGGACCGA-------G-C-G---TTGC--GG--C-AGCATATGCTGGTGTCGCATTTTTCT
577 GGATCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
17553115 TCGTCGGGGCACCATCGTCGGAGCATTACCGGAGAACCTGACCGGCCGCATTGGGGTTTCGACGA
642 TCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
17553180 TCGGGGGGGCCGGGGGCGTGTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
707 TCGGGGGGGCCGGGGG-GTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
17553244 TAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGCTCAAAGAGCATTTGAGATTTTAC
770 T-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
17553309 AGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
834 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
17553370 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTACCAACAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
17553435 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAATCGTAAA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * * * *
17553500 AAG-ATTCAAATATC-GTGAAAAATAGAAAACGAGTCATCTTGCTATGAAACTTCACGTCAAGGC
131 AAGTTTTGAAA-ATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
17553563 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
194 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
*
17553628 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CTGCATCCCGTC-TCCTTGGCCGGC
259 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTTTC-TGGCCGGC
* * * *
17553691 ATAGTGCCCGCCCGCCCGTCCACTCATTTCATC-GATTGGCATAGGCATACGGAGTTCATTCCCA
322 GTAGTGCCCGCCCGCCCG----CTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
17553755 GTCTAAGATTAGACC-GAACAGAGGGTTACGGTAGCAGGATCGACAGCACATAGAGTGGGACCCG
382 GTCTAAGATCAGACCAG-ACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCG
* * *
17553819 GTTGATCCCCTACTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCCCGCACGCTCATTTCGTGG
446 GCTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * *
17553884 TTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAC-GAAGTTCATTCCCAATCTAAGA
511 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAG-AGTTCATTCCCAGTCTAAGA
* * * * *
17553948 TCGGACCAGACCGAGGGTTG-CACCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTT
575 TCGGATCGGACCGAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * *
17554012 TCTTCGTCAGGGCA-C--CGTC---G-----CCGGAGAACCTGACTGGCCGCATTGGGGTTCTGG
639 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
* * ** * *
17554066 CGATC-GGGGGGCCGCGGGGTGTGC-ACACATGATGTGTGATGACTGCTGGTACATGGCCATTAT
704 CGATCGGGGGGGCCGGGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
17554129 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTCAGATTTT
768 ATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * * *
17554194 ATAGGCTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAATGGTCAC
832 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
17554257 AAAATCTTGTACACTTCCAGTTTTTTGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * ** * ** *
17554322 CACGTCTACCAAGTTTGGGCCCGAAACTCCTTCCGAAAATTTTTTTTTAAAAATCTCGAATTGCA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA--AATTTTAAAAAATCTCGAACCGTA
** * *
17554387 AAAAGTTTCAAAAATCATGGGAAAA-A-AAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGG
129 AAAAGTTTTGAAAATCA-GGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
17554450 CTTAAGGAACCATTGCATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGA
193 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
17554515 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCG
258 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCG
**
17554580 TAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCCAGTCTAA
323 TAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17554645 GATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCTAATC
388 GATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCTGATC
* * * * * *
17554710 CCCGGCTTGTGCATCCTGCCCCTTTCGACGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
453 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* *
17554775 TAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGACTTCATTCCCAGTCTAAGATCGGATTG
518 TAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCG
* *
17554840 GATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG
583 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
17554905 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCGTTGGGGTTCCGGCGATTGGGG
648 GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG
17554970 GGGCCGGGGGGGTGTGCGCAA-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
713 GGGCC-GGGGGGTGTGCG-AACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
17555034 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
776 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17555099 CTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCAC
841 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
17555153 AAAATCTTGTACACTTTGATTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
17555218 CACGTCTACCAAGTTTGGGGCCAAAAATCTTTTCGGAAAAATTTTAAAAAATC-CTGAACCGTAA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAA
17555282 AAAGTTTTGAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
130 AAAGTTTTGAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
17555346 TTAAGGGACCATGGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGAT
194 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * * *
17555411 GTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCACGTCCCGTCTCTT-TGGTCGACG
259 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTCTGGCCGGCG
* * *
17555475 TAGTGCCCACCCGCCCGTCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGCGTTCATTCC
323 TAGTG----CCCGCCCG--C--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * *
17555540 CAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACTC
380 CAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCC
* * * * * * * *
17555605 -GATCGATCCCCGGCTTGCGCATGCCGGCCCTCTGGCCGGTTGAGCACTCGCACGCTCGTTTCGT
445 GGCT-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
* *
17555669 -GG--G--TT-GGCTTAC---G--CA-T---A--C---G-----A-AGTTGATTCCCAGTCTAAG
509 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * * ** * * *
17555708 ATCGGATCGGACCGAGTGCTGCGGCAGCACATGCTGCTCTCAGGCTTGTGCTGGTGTCGCATTTT
574 ATCGGATCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * ** * ** * *
17555773 TCTTCACCGGGTCACCATCACCGGACCATCGTCGGAGAACCTGACCGACGTCATTGGGGTTCCGA
639 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-
* * * * *
17555838 TGATCGGGAGGCCGGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGC
703 -G--C--GA-TCGGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGC
*
17555903 CCTTATATTGGCCCC-AGTCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGA
762 CCTTATATTGGCCCCTA-TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
17555967 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
826 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
17556032 TCAC
891 TCAC
* * * *
17556036 AAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTATGCATGCAAAAAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
17556101 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCATAAA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
*
17556166 AAGTTTTGAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
131 AAGTTTTGAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
17556231 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGAACGTAGAAATATGAAGATGT
196 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
*
17556296 GCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAG
261 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAG
**
17556361 TGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCCAGTCTAAGAT
326 TGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*
17556426 CAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCTAATCCCC
391 CAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCTGATCCCC
* *
17556491 GACTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
456 GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
17556556 GCATACGAAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
521 GCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
*
17556621 CGAGGGTTGTGACAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
586 CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
17556686 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGTGGCGTTGGGGTTCCGGCGATCGGGGGGG
651 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
17556751 CCGGGGGGTGTGCGAAAATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTAT
716 CCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTAT
17556816 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
780 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
17556881 CAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCAC
845 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
** * * *
17556931 AAAATCTTAAACACTTCGAATTTTTAGTTGAATATTTTTGTGCATGCCAACAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
17556996 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATGTAAAAAAATC-CTGAACCG-CA
66 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAA
* **
17557059 AAAGGTTTGAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
130 AAAGTTTTG-AAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
17557124 TTAAGGGACCATTATATGAATTTATAAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGAT
194 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * *
17557189 GTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGT
259 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGT
*
17557254 AGTGCCCGCCCGCCCACCCAACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
324 AGTGCCCGCCCG------C--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * * * **
17557319 AGTCTAAGATCGGATCAGATCGAGGGTTGTGATAGTAGGATCGGCATCACACAGAG-GGGACCCG
381 AGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCG
* ** * * *
17557383 GCCGATCATCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCCTTTCGTGG
446 GCTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* *
17557448 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGGTCTAA
511 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCA-GTCTAA
17557510 TATGTGATGG
Statistics
Matches: 4356, Mismatches: 515, Indels: 302
0.84 0.10 0.06
Matches are distributed among these distances:
875 146 0.03
876 6 0.00
877 169 0.04
878 4 0.00
879 12 0.00
880 101 0.02
881 463 0.11
882 48 0.01
883 587 0.13
884 283 0.06
885 8 0.00
886 4 0.00
887 255 0.06
888 182 0.04
889 65 0.01
890 16 0.00
891 12 0.00
892 10 0.00
893 9 0.00
894 105 0.02
895 610 0.14
896 221 0.05
897 121 0.03
898 6 0.00
899 53 0.01
900 41 0.01
901 131 0.03
902 124 0.03
903 232 0.05
904 332 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
AAGTTTTGAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCGGCTGATCCCC
GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
CCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
Found at i:17557494 original size:26 final size:26
Alignment explanation
Indices: 17557458--17557509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17557448 GTTGACTTAG
17557458 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
17557484 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
17557510 TATGTGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:17558194 original size:738 final size:737
Alignment explanation
Indices: 17556777--17558221 Score: 2101
Period size: 738 Copynumber: 2.0 Consensus size: 737
17556767 AATGATGTAC
17556777 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17556842 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATG
*
17556907 GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGTTGAATATTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTTGT
* * *
17556972 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
196 GCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
*
17557037 TGTAAAAAAATCCTGAACCGCAAAAGGTTTGAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
261 TGTAAAAAAATCCTGAACCGAAAAAGGTTTGAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
* *
17557102 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTATAAGCCATAAAAATGGCGT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
** *
17557167 TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
391 TGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17557232 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCAACCGCTCGTTTCGTCGGTTGGCT
456 ATCGCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCCAACCGCTCGTTTCGCCGGTTGGCT
* * * * *
17557297 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGATAGTAGGATCG
521 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGCAGGATCG
* * * * * * * *
17557362 GCATCACACAGAGGGGACCCGGCCGATCATCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
586 ACAGCACACAGAGGGGACCCGGACGATCACCGACTTACGCATCCCACCCCTCCGACCGGCCGAGC
* *
17557427 GCCTGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
651 GCCCGCACGCTCCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGG
17557492 AGTTCATTCCAGGTCTAATATGT
715 AGTTCATTCCAGGTCTAATATGT
* *
17557515 GATGGGTGCTGGTACTTGGCCCTTATATTTGCC-CCTTATCTCTCATCAAACCTCGAGAACTCAC
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCC-TATCCCTCATCAAACCTCGAGAACTCAC
*
17557579 ACCCCCTTACAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
65 ACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAA
** * *
17557643 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
129 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTT
*
17557708 GTGCATGCCAAAAAAAATA-AAGGGATCACCTCTACCAGGTTTGGGGCCAAAACTCCATCCAAAA
194 GTGCATGCCAAAAAAAATACAA-GGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAA
* * * * *
17557772 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTG-AAAATCGTG-AAAATAGAAAATGAGTCG
258 AAATGTAAAAAAATCCT-GAACCG-AAAAAGGTTTGAAAAATCCTGAAAAATAGAAAACGAGTCG
* *
17557834 TCTTGCCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTG-ATTTACAAGCCATAAAAA
321 TCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
* *
17557898 TGGCATTGGCAACACAAAAATATGAAGATGTGCCTAAACCCACCTAACCCACCCTATCGATCCAT
385 TGGCATTGGC-ACACAAAAATATGAAGATGTGCCTAAACCAACCT-A-CCACCCTATCGATCCAC
* * * * *
17557963 GGCTTGCGCAT-GCGTCTCT-TGGTCGGCGTAGTGCGCCGCCCATCCGCCCACCCTCATCGTTTC
447 GGCTTGCGCATCGCGTCTCTCTGGCCGGCGTAGTGC-CCGCCCACCCACCCAACCGC-TCGTTTC
* * *
17558026 GCCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGA-CTGAGTGTTGT-
510 GCCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGTG
* * * *
17558089 AGCAGCAGGATCGACAGCACCCAGAGGGGGACCC-GATGATC-CCGGCTTGCGCATCCCACCCCT
574 A-CAGCAGGATCGACAGCACACAGA-GGGGACCCGGACGATCACCGACTTACGCATCCCACCCCT
* *
17558152 CCGACTGGCCGAG-GACCCGTACGCT-CGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
637 CCGACCGGCCGAGCG-CCCGCACGCTCCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
17558215 GTCTAAG
701 GTCTAAG
17558222 ATCGGACCTG
Statistics
Matches: 632, Mismatches: 60, Indels: 31
0.87 0.08 0.04
Matches are distributed among these distances:
737 69 0.11
738 373 0.59
739 71 0.11
740 111 0.18
741 8 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (737 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTTGT
GCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
TGTAAAAAAATCCTGAACCGAAAAAGGTTTGAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
ATCGCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCCAACCGCTCGTTTCGCCGGTTGGCT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGCAGGATCG
ACAGCACACAGAGGGGACCCGGACGATCACCGACTTACGCATCCCACCCCTCCGACCGGCCGAGC
GCCCGCACGCTCCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGA
GTTCATTCCAGGTCTAATATGT
Found at i:17560500 original size:894 final size:887
Alignment explanation
Indices: 17557511--17560887 Score: 4097
Period size: 866 Copynumber: 3.8 Consensus size: 887
17557501 CAGGTCTAAT
* *
17557511 ATGT-GATGGGTGCTGGTACTTGGCCCTTATATTTGCC-CCTTATCTCTCATCAAACCTCGAGAA
1 ATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCC-TATCCCTCATCAAACCTCGAGAA
*
17557574 CTCACACCCCCTTACAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
65 CTCACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
17557638 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
129 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAATT
* * * * *
17557703 TTTTTGTGCATGCCAAAAAAAATA-AAGGGATCACCTCTACCAGGTTTGGGGCCAAAACTCCATC
194 TTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* * *
17557767 CAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGA
258 CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
*
17557830 GTCGTCTTGCCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTG-ATTTACAAGCCATA
322 GTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
17557894 AAAATGGCATTGGCAACACAAAAATATGAAGATGTGCCTAAACCCACCTAACCCACCCTATCGAT
386 AAAATGGCATTGGC-ACGTAGAAATATGAAGATGTGCCTAAACCCACCT-A-CCACCCTATCGAT
* * * * * *
17557959 CCATGGCTTGCGCAT-GCGTCTCT-TGGTCGGCGTAGTGCGCCGCCCATCCGCCCACCCTCATCG
448 CCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGT-----G--C--CCGCCCACCCGC-TCG
* * * * * * *
17558022 TTTCGCCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGTGTT
503 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * * ** * * * *
17558087 GTAGCAGCAGGATCGACAGCACCCAGAGGGGGACCC-GATGAT-CCCGGCTTGCGCATCCCACCC
568 GCGGTAGCAGGATCGGCAGCACGTAGA-GGGGACCCGGCTGATCCCCGACTTACGCAT-CCGCCC
* * * * * *
17558150 CTCCGACTGGCCGAG-GACCCGTACGCTC-GTTCGTGGGTTGAC-T-----TA-G-G--CA-T--
631 CTCTGGCCGGCTGAGCG-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCC
*
17558200 -A--C--G------GAGTTCATTCCAGTCTAAGATCGGACCT-GATCGAGGGTTGTGGCAGCACA
695 CAGTCAAGCATACAGAGTTCATTCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGCACA
* * *
17558253 TG-TGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCAAGGCACCAATCACCGGAGCATC
759 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACC-ATCACCGGAGCATC
* *
17558317 ATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-----G--GGGGGTGTGCGCATATG
823 ATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGTGTGCGCAAATG
17558375 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAA
1 ATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAA
*
17558440 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC
65 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
17558505 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTT
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAATTT
* * *
17558570 TTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTTCG
195 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
*
17558635 GAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACGAGT
260 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGT
* *
17558699 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTAGAAGCCA-AAAA
324 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
17558763 ATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGG
389 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
17558828 CTTGCACGTCCCGTCTCTT-TGGTCGACGTAGTGCCCACCCGCCCGTCCGTCCGCTCGTTTCGTC
454 CTTGCGCATCCCGTCT-TTCTGGCCGACGTAGTG----CCCGCCC--AC--CCGCTCGTTTCGTC
* * * *
17558892 GGTTAGCTTAGGCATACGGCGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAG
510 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAG
* * * * * *
17558957 CAGGATTGGCAGCACGTAGAGGGGGACTC-GATCGATCCCCGGCTTGCGCATGCCGGCCCTCTGG
575 CAGGATCGGCAGCACGTAGA-GGGGACCCGGCT-GATCCCCGACTTACGCAT-CCGCCCCTCTGG
* * * * * *
17559021 CCGGTTGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTACGCATAC--G---A-----AGT---
637 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAA
* * * *
17559073 ---T---GA-TTC---CCAGTCTAAGATCGGACCGGACCGAGTGCTGCGGCAGCACATGCTGGGC
702 GCATACAGAGTTCATTCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGC
* * * * * * *
17559128 TCAGGCTTGTGCTGGTGTCGCATTTTTCTTC-ACCGGGTCACCATCACCGGACCATCGTCGGAGA
767 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGG-CACCATCACCGGAGCATCATCGGAGA
* * * *
17559192 ACCTGACCGACGTCATTGGGGTTCCGATGATCGGGAGGCCGGGGGGCCGGGGGGTGTGCGCACAT
831 ACCTGACCGGCGGCATTGGGGTTCCG--G--C--GA--TCGGGGGGCC-GGGGGTGTGCGCAAAT
17559257 G
887 G
* *
17559258 ATGTCGATGGGTGCTAGTACTTGG-CCTTATATTGGCC-CC-AGTCCCTCATCAAACCTCGGGAA
1 ATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTA-TCCCTCATCAAACCTCGAGAA
*
17559320 CTCA-AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGATGTGT
65 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-A-GTGT
** *
17559384 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAAT
128 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAAT
* *
17559449 TTTTTTATGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
193 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* * *
17559513 CGAAAAAATTTTAAAAAAT-CTCAAACCATAAAAAGTTTTGAAAATCAGGAAAAATAGAAAACGA
258 CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
*
17559577 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
322 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
17559642 AAATGGAATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCAC
387 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
17559707 GGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCAGTTGGC
452 GGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGC
** * *
17559772 TTAGGCATTTGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATC
517 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATC
* * *
17559837 GGCAGCACGTAGAGAGGGACCCGGCTAATCCCCGACTTACGCATCCTGCCCCTTTGGCCGACTGA
582 GGCAGCACGTAGAG-GGGACCCGGCTGATCCCCGACTTACGCATCC-GCCCCTCTGGCCGGCTGA
17559902 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAGCATAC
645 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTC-AAGCATAC
* * *
17559967 AGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGCACATGCTGAGCTCGGG
708 AGAGTTCATT-CCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
** *
17560032 CATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
772 CATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCATCGGAGAACCTGA
* * *
17560097 CCGGTGGCGTTGGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGAAAATG
837 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCAAATG
17560149 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAA
1 ATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAA
17560214 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
65 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** *
17560279 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGTTGAATAT
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAATTT
* *
17560344 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
195 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * * ** *
17560409 AAAAAATGTAAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCCTGAAAAATAGAAAACGAGTC
260 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* *
17560474 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTATAAGCCATAAAAA
325 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17560539 TGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
390 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
17560604 TTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGCCCACCCGCTCGTTTCGTCGG
455 TTGCGCATCCCGTCTTTCTGGCCGACGTA--G---T---GCCCGCCCACCCGCTCGTTTCGTCGG
* * * * *
17560669 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGATAGTA
512 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCA
* * **
17560734 GGATCGGCATCACGTAGAGGGGACCCGGCCGATCATCGACTTACGCATCCCGCCCCTCTGGCCGG
577 GGATCGGCAGCACGTAGAGGGGACCCGGCTGATCCCCGACTTACGCAT-CCGCCCCTCTGGCCGG
* *
17560799 CTGAGCGCCTGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
641 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTC-AAGC
*
17560864 ATACGGAGTTCATTCCAGGTCTAA
704 ATACAGAGTTCATTCCA-GTCTAA
17560888 TATGTGATGG
Statistics
Matches: 2187, Mismatches: 221, Indels: 173
0.85 0.09 0.07
Matches are distributed among these distances:
860 7 0.00
862 3 0.00
863 114 0.05
864 16 0.01
865 82 0.04
866 332 0.15
867 128 0.06
868 35 0.02
870 4 0.00
871 4 0.00
872 6 0.00
873 160 0.07
874 2 0.00
875 2 0.00
876 1 0.00
877 7 0.00
879 56 0.03
880 191 0.09
881 179 0.08
882 19 0.01
883 20 0.01
884 3 0.00
891 29 0.01
892 19 0.01
893 89 0.04
894 279 0.13
895 59 0.03
896 1 0.00
897 1 0.00
899 114 0.05
900 7 0.00
901 116 0.05
902 102 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
ATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGTAGAGGGGACCCGGCTGATCCCCGACTTACGCATCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAAGCATACAGAGTTCA
TTCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGGCGATCGGGGGGCCGGGGGTGTGCGCAAATG
Found at i:17560872 original size:26 final size:26
Alignment explanation
Indices: 17560836--17560887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17560826 GTTGACTTAG
17560836 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
17560862 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
17560888 TATGTGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:17561572 original size:738 final size:738
Alignment explanation
Indices: 17560155--17561600 Score: 2163
Period size: 738 Copynumber: 2.0 Consensus size: 738
17560145 AATGATGTAC
17560155 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17560220 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
*
17560285 GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGTTGAATATTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTTGT
* * *
17560350 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
196 GCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
*
17560415 TGTAAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
261 TGTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
* *
17560480 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTATAAGCCATAAAAATGGCGT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
** *
17560545 TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
391 TGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17560610 ATCTCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
456 ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCGCCGGTTGGCT
* * * * * * *
17560675 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGATAGTAGGATCG
521 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGTGACAGCAGAATCG
* * ** * * * * * *
17560740 GCATCACGTAGAGGGGACCCGGCCGATCATCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
586 ACAGCACCCAGAGGGGACCCGACCGATCACCGACTTACGCATCCCACCCCTCCGACCGGCCGAGC
*
17560805 GCCTGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
651 GCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
17560870 AGTTCATTCCAGGTCTAATATGT
716 AGTTCATTCCAGGTCTAATATGT
* *
17560893 GATGGGTGCTGGTACTTGGCCCTTATATTTGCC-CCTTATCTCTCATCAAACCTCGAGAACTCAC
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCC-TATCCCTCATCAAACCTCGAGAACTCAC
*
17560957 ACCCCCTTACAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
65 ACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
** * *
17561021 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
129 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTT
* *
17561086 GTGCATGCCAAAAAAAATA-AAGGGATCACCTCTACCAGGTTTGGGGCCAAAACTCCATCCGAAA
194 GTGCATGCCAAAAAAAATACAA-GGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAA
* * ** * *
17561150 AAATTTAAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
258 AAATGTAAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGT
* *
17561214 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
322 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
* *
17561279 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
387 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTT
* * * *
17561344 GCGCATGC-CGTCTCT-TGGTCGGCGTAGTGCCCGCCCATCCGCCCACCCTCTCGTTTCGCCGGT
452 GCGCAT-CTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCGCCGGT
* * *
17561407 TGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGA-CTAAGTGTTGT-AGCAGC
516 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AAGGGTTGTGA-CAGC
* * * * *
17561470 AGAATCGACAGCACCCAGAAGGGGACCCGACTGATCCCCGGCTTGCGCATCCCACCCCTCCGACT
579 AGAATCGACAGCACCCAG-AGGGGACCCGACCGATCACCGACTTACGCATCCCACCCCTCCGACC
* *
17561535 GGCCGAG-GACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
643 GGCCGAGCG-CCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
17561599 AG
707 AG
17561601 ATCGGATCTG
Statistics
Matches: 634, Mismatches: 65, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
736 2 0.00
737 111 0.18
738 518 0.82
739 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (738 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAATTTTTAGCTGAATATTTTTGT
GCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
TGTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCGCCGGTTGGCT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGTGACAGCAGAATCG
ACAGCACCCAGAGGGGACCCGACCGATCACCGACTTACGCATCCCACCCCTCCGACCGGCCGAGC
GCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCAGGTCTAATATGT
Found at i:17564252 original size:26 final size:26
Alignment explanation
Indices: 17564223--17564282 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
17564213 GTTGACTTAG
*
17564223 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGATTCCATTCCCAGTCTAA
* *
17564249 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACAGATTCCATTCCCAGTCTAA
17564275 G-AT-CAGAT
1 GCATACAGAT
17564283 CAAACCGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGATTCCATTCCCAGTCTAA
Found at i:17565204 original size:895 final size:895
Alignment explanation
Indices: 17560893--17568892 Score: 9581
Period size: 894 Copynumber: 9.0 Consensus size: 895
17560883 TCTAATATGT
* * *
17560893 GATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCTTATCTCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17560958 CCCCCTTACAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
66 CCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17561022 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
130 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17561087 TGCATGCCAAAAAAAATA-AAGGGATCACCTCTACCAGGTTTGGGGCCAAAACTCCATCCGAAAA
195 TGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
17561151 AATTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
259 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17561216 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
324 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17561281 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
389 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17561346 GCATGCCGTCTCT-TGGTC-GGCGTAGTGCCCGCCCATCCGCCCACCCTCTCGTTTCGCCGGTTG
454 GCATCCCGTCTCTCTGG-CGGGTGTAGTGCCCG----TCCG----CCCGCTCGTTTCGTCGGTTG
* * * * * ** *
17561409 GCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACTAAGTGTTGTAGCAGCAGAA
510 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * * * * *
17561474 TCGACAGCACCCAGAAGGGGACCCGACTGATCCCCGGCTTGCGCATCCCACCCCTCCGACTGGCC
575 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
17561539 GAG-GACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A
640 GAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
17561602 T-C-G-G---------A-TC-----T-GA-T----CGAGGGTTGTGGCAGCACATG-TGGGCTCG
704 TACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * ** * *
17561642 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCATCGGAGAACCT
769 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
*
17561707 GACCGGCGGCATTGGGGTTCCGACGAT---------C-GGGGGGTGTGCGCATATGATGTGC
834 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
17561759 GATGGGTGCTGGTACTTGGCCCCTATATTGGTCCCCTATCCCTCATCAAACCTAGAAAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17561824 CCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17561889 GGGACACTTTTTTCAAATGGT--CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
17561952 GCATGCCAACAAAAAGACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
17562017 TTTTAAAAAATCCCTAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
17562082 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATTGCAT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17562147 TGGCACACAGAAATA-AAAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
391 TGGCACGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17562211 CATCCCATCTCTCTGGCGAGTGTAGTGCCCGTCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
455 CATCCCGTCTCTCTGGCGGGTGTAGTG--C--CCG-T---CCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
17562276 TTAGGCATACGAAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATC
512 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
17562341 GAAAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCACATCCCGCCTCTCTAGCCGCCTGA
577 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
17562406 ACGCCCG---GCTCG-TTCCT-GGTTGACTTAGGCATACGG-GTTGA-TCCCAGTCTAGGCAGAC
642 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** *
17562464 -GAGTTCATTCCCATTCTAAGATCGGACCGGGTTGCGAGGGTTGCGGGCAGCCACATACGTGGGC
707 GGAGTTCATTCCCAGTCTAAGATC-GA-CTGG-ACCGAGGGTTGC-GGCAG-CACATGC-TGGGC
* * * * * *
17562528 TGTGGGCATGTGCCGGTGCCGTATTTTTTCTTTCGTCGGGGCACCCA-CGTC-GAGCATCGTCAG
766 T-CGGGCATGTGCTGGTGCCGCA-TTTTTC-TTCATCGGGGCA-CCATCGCCGGAGCATCGTCGG
* *
17562591 AGAACCT-ACCGGCAGCATTGGGGTTCCGGA-GAT-TGGGGGGCCGGGGGGGTGTGCGCACATGA
827 AGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
17562653 TGTGC
891 TGTGC
17562658 GATGGGTG-TGGTACTCT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1 GATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17562721 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAG-CATTAAAGTGTCTGAAAT
65 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17562785 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
130 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
*
17562850 GTGCATGCCAACAAAAATACAAGGATCACGT-TACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
194 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
* *
17562914 AAAGTTTAAAAAATCCCGAACCCGCAAAAATGTTTCGAAAATCATTGAAAAACAGAAAACGAGTC
258 AAATTTTAAAAAATCCCGAA-CCGCAAAAA-GTTTCGAAAATCA-TGAAAAATAGAAAACGAGTC
* *
17562979 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCGTTTGAATTTACGAGCCATAAAA
320 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAA
** * * *
17563044 ATGGCATTGGGCACATAGAAATATGAAGATGGTACGTAAACCCACCTACCACCCTACCGATTCCA
384 ATGGCATT-GGCACGCAGAAATATGAAGAT-GTGCCTAAACCCACCTACCACCCTATCGA-TCCA
* ** * ** * * *
17563109 CGACTTGCGCATCCCGTCTCTCTAGTTGACGTAGTCCTGCCCGCCCGCTTCCCGCTTGTTTCATC
446 CGGCTTGCGCATCCCGTCTCTCT-GGCG-GGT-GTAGTGCCCGTCCG---CCCGCTCGTTTCGTC
*
17563174 GGTTTGGCTTTGGCATAACGGAGTTCATT-CCATGTCTAAGATCA-ACCATGGACTGAGGGGTTG
505 GG-TTGGCTTAGGCAT-ACGGAGTTCATTCCCA-GTCTAAGATCAGACCA--GACTGA-GGGTTG
** * * * *
17563237 CAGTGCACGCA--ATCGGTAGTATGCAGAGGGGGACCCGGGCCAAGTCCCCGCAGCTTGCGCATA
564 C-G-GCA-GCAGGATCGACAGCACGCAGAGGGGGACCC-GACCGA-TCCCCG--GCTTGCGCAT-
*
17563300 CCCTGCCCCTATGGCCGGCTGAGC-CCCGCACGCGTCGTTTCGTGGGTTGACTTAGGCATACGGA
621 CCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGA
17563364 GTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CGA----ACCGAGGGTTGC
684 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGC
* * * * * * *
17563404 GGCAGCACATGCTAGGCTCAGACATGCGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCC
749 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC
** *
17563469 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGT
814 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
*
17563533 GTCCGCACATGATGTGC
879 GTGCGCACATGATGTGC
* *
17563550 GATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17563615 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
17563680 GGGACACTTTGTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17563745 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
17563810 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTTGTCTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
17563875 CCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAATTTACAAGCCATAAAAATGGCAT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
17563940 TGGCATGCA-AAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATACACGGCTTGCGC
391 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17564004 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGTCTCTCTGGCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** ** ** * *
17564069 CGGAGTTAATTCCCAGTCTAAGATCAGATC-GAACCAAATGTTGCGGCAATAGGATCGGCAACAC
521 CGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
** * * *
17564133 ATAGAGGGGGACCTGACCGATCCTCC-GCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCG
585 GCAGAGGGGGACCCGACCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
17564197 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGATTTCATTCCCAGTCTAAGCATACGGAGTCC
649 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * * *
17564262 ATTCCCAGTCTAAGATCAGA-TCAAACCGAGGGTTGCAGTAGCACATGCTGGGCTCGAGCATGTG
714 ATTCCCAGTCTAAGATC-GACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
17564326 CTGGTGCCGTATTTTTCTTTATCGGGGCACCATCGCTGGAGCATTGCCGGAGAACCTGACCGGCG
777 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCG
* * **
17564391 GCATTGGGGTTTCGGCGATCGGGGGGGCCGATGGGGTGTGCGCACATGATGTGC
842 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
17564445 GATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
17564510 TCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTG-CAGGAGCCATTAAAGTTTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
17564574 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTAT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
17564639 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCATTCCGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
17564704 TTTTGAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
17564769 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
17564834 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
391 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
17564899 ATCCCGTCTCTCTGGTGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 ATCCCGTCTCTCTGGCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
17564964 CAGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
521 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * * * * *
17565029 TAGAGCGGGACCCGATCAATCCCCGTCTTGCGGATCCCACACCTCTGGCCGGCTGAGCGCCCGTA
586 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* **
17565094 CGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
651 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
17565159 TCCCAGTCTAAGATCGGACTGGACCAAGGGCTACGGTAGCACATGCTAGGCT-GGGCCATGTGCT
716 TCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG-CATGTGCT
** * * * * * * *
17565223 GGCACTGCATTTTTCTTCA-CTGCGGCACCATCGTCGGAGCATCGCCAGAGAACCTAACCGACGG
779 GGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG
* * **
17565287 CATTGGGGTTCTGACGATCGGGGGGGCCAAGGGAAGTGT--GCACATGATGTGC
843 CATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGC
*
17565339 GATGGGTGCTGGTACTTGGCCCTTATATTTG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17565403 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
17565468 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTAT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
17565533 GCATGCCAACAAAACT-CAAGGATCACGTCTACCAAGTTTAGCGCCAAAACTCCTTCTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
17565597 TTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
17565662 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AGCCATAAAAATGGCAT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
17565726 TGGCACGTAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCATATCTATCCATGGCTTGCGC
391 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
17565791 ATCCCGTCTCTCTGGCCGACATAGT-GCTCGCCCGCCCGCCGACTCGCTCGTTTCGTCAGTTGGC
456 ATCCCGTCTCTCTGG-CG-GGT-GTAG-T-GCCCGTCCG-C--C-CGCTCGTTTCGTCGGTTGGC
* * * * **
17565855 TTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAAACCAAACTGAGGGTTATGGCAGC---AT-
512 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* * *
17565916 ----G--C-TA-AGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA
577 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
17565973 GCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA-
642 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
17566031 --AG---------A-TC--AGATC-A---GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGC
707 GGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
17566078 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGAC
772 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * ** *
17566143 TGACGGCATTATGGTTCCGACGATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
837 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
17566201 GATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17566266 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
17566331 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
17566396 GCATGCCAACAAAGTTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * * * *
17566461 TTTTAAAAAAACCTGAACCGTAAAAA-TTTTGAAAATCGTGAAAAACAGAAAATGAGTCATCTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
17566525 -CATTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
326 CCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** ** *
17566589 CTGGCACATAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
390 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17566654 CATCCCGTCTCTCTGGC-TG-GCA-T---AGT--GCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
455 CATCCCGTCTCTCTGGCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** ** * *
17566711 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAATAGGATCGGCAGCAT
520 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * *
17566776 GCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCTCCCCTCTGGCCGGCTGAGCGCCCGC
585 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * * * *
17566841 ACGCTCGTTCCATGGGTTGACTCATGCATACGAAGATCA-TCCCAGTCTAAGCATATGGAGTTCA
650 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
17566905 TTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCT
715 TTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * *
17566970 AGCGCCACATTTTTC-T--TC---GC-CGA-CG-C--ACCATCGTCGGAGAACCTAACCGGCAGC
779 GGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* *
17567024 ATTGGGGTTCCAACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGC
844 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
17567076 GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAGCTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
17567141 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
17567206 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
17567271 GAATGCCAACAAAAATACAAGGATCACATCT----GGTTTTGGGCCAAAACTCTTTTCGAATAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * **
17567332 TTTTAAAAAATCCCGAACCACAAAAAATTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
261 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
17567397 CCATGAAACTTCACGTGAAGGCTTAAGGGAACATTTTATGAATTTACAAGCCATAAAAATGGCAT
326 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17567462 TGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGC
391 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * * *
17567527 ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCGCGCCCGCTCACTCGTTTCATAGGTTGGCT
456 ATCCCGTCTCTCTGGCGGGTGTAGTGCCCG---TC-CGCCCG----CTCGTTTCGTCGGTTGGCT
** * * * *
17567592 TAGGCATACGGAGTTCATTCCTGGTCTAAGAT-TGAACCCA-ACTAAGGGTTGCGGTAGTAGGAT
513 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
17567655 TGGCAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCCACCCCTCTAGCCGGCTG
576 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
17567720 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCAAA
641 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
17567785 CGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCAAGGTTTACGGCAGCACATGTTGGGCTCGG
706 CGGAGTTCATTCCCAGTCTAAGAT-CGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
17567850 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT----------T-GCCGGAGAACCTG
770 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * * * * * *
17567904 ACCGGCGACATTAGGGTTTCGGCGATCGGGGGGGCC--AGGGG-GTACGCACATTATGTGT
835 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
17567962 GATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17568027 -CCCCTATAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 CCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17568091 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGTTAAATTTTTTTG
130 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17568156 TGCGTGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
17568221 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
260 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
17568286 GCAATGAAACGTCATGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGGCATAAAAATGGCA
325 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17568351 TTGGCATGCAGAAATATG-AGTATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
390 TTGGCACGCAGAAATATGAAG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17568415 GCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCTGCACG-CTCGCCCGCTCATTTTGTCGGCTG
454 GCATCCCGTCTCTCTGG-CG-GGT-GTA---G--TGCCCGTC-CGCCCGCTCGTTTCGTCGGTTG
* * * *
17568479 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACTGAGGGTTGCGGCAGTAAGA
510 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * *
17568544 TCGACAGCACGCAGAGTGGGACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACT
575 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
17568609 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGCAT
640 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
17568674 ATGGAGTTCATTCCCAGTCTAAGATCAGACTCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
705 ACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
17568739 GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTATCATCGCCAGAGCATCGTCGGAGAACCT
769 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* ** * ** *
17568804 AACTAGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGC
834 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
17568866 GATGGGTGCTGGTACTTAGCCCTTATA
1 GATGGGTGCTGGTACTTGGCCCTTATA
17568893 GGTTTGCTGC
Statistics
Matches: 6165, Mismatches: 700, Indels: 500
0.84 0.10 0.07
Matches are distributed among these distances:
848 65 0.01
849 1 0.00
851 3 0.00
852 1 0.00
854 1 0.00
856 1 0.00
858 12 0.00
859 13 0.00
860 120 0.02
861 13 0.00
862 150 0.02
863 250 0.04
864 440 0.07
865 146 0.02
866 140 0.02
867 6 0.00
868 67 0.01
869 21 0.00
870 12 0.00
871 49 0.01
872 169 0.03
873 11 0.00
874 58 0.01
875 252 0.04
876 5 0.00
877 24 0.00
878 24 0.00
879 19 0.00
880 5 0.00
881 1 0.00
882 16 0.00
883 3 0.00
884 7 0.00
885 91 0.01
886 250 0.04
887 22 0.00
888 263 0.04
889 177 0.03
890 596 0.10
891 63 0.01
892 184 0.03
893 393 0.06
894 651 0.11
895 526 0.09
896 28 0.00
897 43 0.01
898 98 0.02
899 91 0.01
900 126 0.02
901 50 0.01
902 16 0.00
903 65 0.01
904 65 0.01
905 31 0.01
906 48 0.01
907 46 0.01
908 8 0.00
909 10 0.00
910 26 0.00
911 7 0.00
912 8 0.00
914 9 0.00
915 7 0.00
916 15 0.00
918 2 0.00
919 3 0.00
920 5 0.00
921 21 0.00
922 5 0.00
923 11 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
Found at i:17568511 original size:890 final size:888
Alignment explanation
Indices: 17566014--17568892 Score: 3792
Period size: 890 Copynumber: 3.2 Consensus size: 888
17566004 AGGCATACGA
* * * *
17566014 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
17566079 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGACT
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT------AGC--CG---GAGAACCTGACC
* * * *
17566144 GACGGCATTATGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
120 GGCGACATTAGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
17566209 CTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
185 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
17566274 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACT
250 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
17566339 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
315 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * *
17566404 ACAAAGTTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
380 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
17566469 AAACCTGAACCGTAAAAATTTTGAAAATCGTGAAAAACAGAAAATGAGTCATCTTGCATTGAAAC
445 AATCCTGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAAC
* * ***
17566534 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACATA
510 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
** *
17566599 GAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCT
575 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
17566664 CTCT-G--G-C-T-G---GCAT--A-G-T-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
640 CTCTGGCCGACGTAGTCCGCCTGCACGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* ** * * *
17566715 AGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAATAGGATCGGCAGCATGCAG
705 AGTTCATTCCCAGTCTAAGATCA-AACCAACTAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAG
* * *
17566780 AGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCTCCCCTCTGGCCGGCTGAGCGCCCGCACGC
769 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
17566845 TCGTTCCATGGGTTGACTCATGCATACGAAGATCA-TCCCAGTCTAAGCATATGG
834 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
* * * *
17566899 AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** * * * *
17566964 TGTGCTAGCGCCACATTTTTCTTCGCCGACGCACCATCGTCGGAGAACCTAACCGGC-AGCATTG
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATAGCCGGAGAACCTGACCGGCGA-CATTA
* *
17567028 GGGTTCCAACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGTACTT
130 GGGTTCCGACGATCGGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTT
* *
17567093 GGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATT
194 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
17567158 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
259 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
17567223 TGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATA
324 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * *
17567288 CAAGGATCACATCT----GGTTTTGGGCCAAAACTCTTTTCGAATAAATTTTAAAAAATCCCGAA
389 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
** * * *
17567349 CCACAAAAAATTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
454 CC-GTAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTG
* *
17567414 AAGGCTTAAGGGAACATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
518 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
17567479 AAGATGTGCTTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC
583 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
17567544 GACGTAGTGCCCGCCCGCGCGCCCGCTCACTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCA
648 GACGTAGT--CCGCCTGCACGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
** * * * * * *
17567609 TTCCTGGTCTAAGATTGAACCCAACTAAGGGTTGCGGTAGTAGGATTGGCAACACGTAGAGGGGG
711 TTCCCAGTCTAAGA-TCAAACCAACTAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* *
17567674 ACCCGACCGATCCCCGGCTTGCTCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTT
775 ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
17567739 CATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCAAACGG
840 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
* * * * *
17567788 AGTTCATTCCCAGTCTAAGATCCGACCGGACCAAGGTTTACGGCAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
17567853 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGAACCTGACCGGCGACATTAG
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATAGCCGGAGAACCTGACCGGCGACATTAG
* * ** * * * * *
17567918 GGTTTCGGCGATCGGGGGGGC-CAGGGG-GTACGCACATTATGTGTGATGGGTGCTGGTACTTGT
131 GGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
**
17567981 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTATAAAGAGCATTT
196 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT-TAAAGAGCATTT
*
17568045 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
260 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
17568110 GGTCACAAAATCTTGTACACTTCGACTTTTTAGTTAAATTTTTTTGTGCGTGCCAACAAAAATAC
325 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
17568175 GAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
390 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
** * * *
17568240 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACGTCATGTGA
455 CGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGA
* *
17568305 AGGCTTAAGGGACCATTGTATGAACTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATG-
519 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
17568369 AGTATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
584 AG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** *
17568434 GACGTAGTACCTGCCTGCACGCTCGCCCGCTCATTTTGTCGGCTGGCTTAGGCATACGGAGTTCA
648 GACGTAGT-CC-GCCTGCACGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
17568499 TTCCCAGTCTAAGATCAAACTAGACTGAGGGTTGCGGCAGTAAGATCGACAGCACGCAGAGTGGG
711 TTCCCAGTCTAAGATCAAACCA-ACTAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * * *
17568564 ACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTT
775 ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
17568629 CGTGGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGCATATGG
840 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
17568678 AGTTCATTCCCAGTCTAAGATCAGACTC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCAGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
17568742 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGTATCATCGCCAGAGCATCGTCGGAGAACCTAAC
65 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGG---CA---CCATAG---C--CGGAGAACCTGAC
** * * * ** *
17568807 TAGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGATGGG
119 CGGCGACATTAGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
17568872 TGCTGGTACTTAGCCCTTATA
183 TGCTAGTACTTGGCCCTTATA
17568893 GGTTTGCTGC
Statistics
Matches: 1723, Mismatches: 225, Indels: 73
0.85 0.11 0.04
Matches are distributed among these distances:
871 41 0.02
872 167 0.10
873 1 0.00
874 35 0.02
875 240 0.14
876 1 0.00
877 3 0.00
878 1 0.00
879 1 0.00
883 2 0.00
885 94 0.05
886 219 0.13
887 4 0.00
888 170 0.10
889 161 0.09
890 493 0.29
891 1 0.00
893 2 0.00
896 4 0.00
899 1 0.00
901 39 0.02
902 1 0.00
903 4 0.00
904 38 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATAGCCGGAGAACCTGACCGGCGACATTAG
GGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
GTAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTCCGCCTGCACGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAAACCAACTAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
Found at i:17569719 original size:829 final size:833
Alignment explanation
Indices: 17568051--17569721 Score: 2378
Period size: 829 Copynumber: 2.0 Consensus size: 833
17568041 ATTTGAGATT
17568051 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * * *
17568116 AAAATCTTGTACACTTCGACTTTTTAGTTAAATTTTTTTGTGCGTGCCAACAAAAATACGAGGAT
66 AAAATCTTGTAAACTTCAACTTTTTAGTTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
*
17568181 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
131 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAA
* * * *
17568246 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACGTCATGTGAAGGCTT
196 AACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAATGAAACGTCACGTGAAGGCTT
* * *
17568311 AAGGGACCATTGTATGAACTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAGTATGT
261 AAGGGACCATTGTATGAACTTACAAGCCAGAAAAATGGCATTGGCACGCAGAAATATGAGTATGT
*
17568376 GCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
326 GCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCACTGGCCGACGTAG
* *
17568441 TACCTGCCTGCACGCTCGCCCGCTCATTTTGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAG
391 ---CTGCC-GCACGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAG
*
17568506 TCTAAGATCAAACTAGACTGAGGGTTGCGGCAGTAAGATCGACAGCACGCAGAGTGGGACCAGAC
452 TCTAAGATCAAACTAGACTGAGGGTTGCGGCAGTAAGATCGACAGCACGCAGAGAGGGACCAGAC
* * *
17568571 CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
517 CGATCCCCGACTTGCGCAACCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCATTTCGTGGGT
* * *
17568636 TGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
582 TGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
*
17568701 GACTCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
647 GACTCGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
* * * * * * * *
17568766 CACCGGGGTATCATCGCCAGAGCATCGTCGGAGAACCTAACTAGCGGCATTGGGGTTTCGGTGAT
712 CACCGAGGCACCATCGCCAGAGCATCGCCAGAGAACCTAACCAGCGGCATTGGGGTTCCGATGAT
*
17568831 CGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTAGCCC
777 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCC
17568888 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
17568953 AAAATCTTGTAAACTTTAAGTTTTTAGCTT-AATTTTTTTGTGCATGCCAAAAAAAATGCAAGGA
66 AAAATCTTGTAAACTTCAACTTTTTAG-TTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * *
17569017 TCATGTCTACCAAGTTTTGGGCCAAAACA-CCTTCTGAAAAAATTTTAAAAAATCTTGAATCGCA
130 TCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCA
* ** ** * * *
17569081 AAATCTTTTGAAAATTGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
194 AAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAATGAAACGTCACGTGAAGGC
* *
17569146 TTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAGAAATATGAAG-A
259 TTAAGGGACCATTGTATGAACTTACAAGCCAGAAAAATGGCATTGGCACGCAGAAATATG-AGTA
* * * *
17569210 TGTGCCTGAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCACTGGCCGGCG
323 TGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCACTGGCCGACG
* *
17569275 TAG-TG-C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
388 TAGCTGCCGCACGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
17569336 CTGAGATCAGAC-AGGA-TCGGGGGTTGCGGCAGTAGGATTTG-CAGCATGCAGAGAGGGACCCG
453 CTAAGATCAAACTA-GACT-GAGGGTTGCGGCAGTAAGA-TCGACAGCACGCAGAGAGGGACCAG
* * * ** *
17569398 ACTGATCCCCGACTTGCGCAACTCGCCCCTCTGGCCGGCTAAGCGCCCACACGCTTGTTTCGTTG
515 ACCGATCCCCGACTTGCGCAACCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCATTTCGTGG
* *
17569463 GTTGACCTAGGCGTA-GGAAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
580 GTTGACCTAGGCATACGG-AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
* * *
17569527 TCGGAC-CGGACCGAGGGTTGTC-ATAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTT
644 TCAGACTC-GACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
*** * * * *
17569590 TTCTTTGTCGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCG
707 TTCTTCACCGAGGCACCATCGCCAGAGCATCGCCAGAGAACCTAACCAGCGGCATTGGGGTTCCG
* *
17569655 ATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
772 ATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCC
17569717 TTATA
1 TTATA
17569722 TTGGCCCCCT
Statistics
Matches: 741, Mismatches: 84, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
828 5 0.01
829 378 0.51
830 4 0.01
832 1 0.00
833 2 0.00
837 346 0.47
838 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (833 bp):
TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTAAACTTCAACTTTTTAGTTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAA
AACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAATGAAACGTCACGTGAAGGCTT
AAGGGACCATTGTATGAACTTACAAGCCAGAAAAATGGCATTGGCACGCAGAAATATGAGTATGT
GCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCACTGGCCGACGTAG
CTGCCGCACGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAAACTAGACTGAGGGTTGCGGCAGTAAGATCGACAGCACGCAGAGAGGGACCAGACCGAT
CCCCGACTTGCGCAACCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCATTTCGTGGGTTGAC
CTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACT
CGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC
GAGGCACCATCGCCAGAGCATCGCCAGAGAACCTAACCAGCGGCATTGGGGTTCCGATGATCGGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCC
Found at i:17570078 original size:368 final size:368
Alignment explanation
Indices: 17569423--17570109 Score: 1065
Period size: 368 Copynumber: 1.9 Consensus size: 368
17569413 GCGCAACTCG
* * * * * *
17569423 CCCCTCTGGCCGGCTAAGCGCCCACACGCTTGTTTCGTTGGTTGACCTAGGCGTAGGAAGTTTAT
1 CCCCTCTGGCCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATAAGAAGTCTAT
* ** * * *
17569488 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTCATAG
66 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGACACAG
* * *
17569553 CACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGAGGCACCATCGTCGGAGC
131 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGC
* * *
17569618 ATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCG
196 ATCGCCAGAGAACCTAACCAGCGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCG
*
17569683 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCTTGTGC
261 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCTTGTGC
17569748 ATCCCGTGTCTCTGGCCGGCCGATCCCCGGCTTACGCATCCTA
326 ATCCCGTGTCTCTGGCCGGCCGATCCCCGGCTTACGCATCCTA
* * * *
17569791 CCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGCTCT
1 CCCCTCTGGCCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATA-AGAAG-TCT
*
17569855 -TTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTT-ACGA
64 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAC-A
* ** *
17569918 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGCCGG
128 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGG
*
17569983 AGCATCGCCAGAGAACCTAACCAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGT
193 AGCATCGCCAGAGAACCTAACCAGCGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGT
17570048 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
258 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
17570110 AAACAATGAG
Statistics
Matches: 287, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
367 1 0.00
368 283 0.99
369 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.30, T:0.25
Consensus pattern (368 bp):
CCCCTCTGGCCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATAAGAAGTCTAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGACACAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGC
ATCGCCAGAGAACCTAACCAGCGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCTTGTGC
ATCCCGTGTCTCTGGCCGGCCGATCCCCGGCTTACGCATCCTA
Found at i:17571323 original size:26 final size:26
Alignment explanation
Indices: 17571293--17571345 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17571283 GTTGACTTAG
17571293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17571319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17571345 G
1 G
17571346 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17573118 original size:26 final size:26
Alignment explanation
Indices: 17573081--17573133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17573071 GTTGACTTAG
* *
17573081 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17573107 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17573133 G
1 G
17573134 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17573590 original size:903 final size:903
Alignment explanation
Indices: 17571198--17574181 Score: 4414
Period size: 903 Copynumber: 3.3 Consensus size: 903
17571188 TAGGATCGAA
** ** * *
17571198 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCGCCCCTTTGGTCGGCTGAGCT
1 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCCCTCTGGCCGGCTGAG-T
** *
17571263 -CCCGCACGCTCGTTTCATACGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * *
17571327 AGTTCATTCCCAGTCTAAGATTGGATCAGATCGAAGGTTACGGTAGCACATGCTGGGCTCGGGCA
130 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
** ** ** * * * * *
17571392 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAAAACCTGATC
195 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACATGACC
* * * * *
17571457 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCAATGGG
260 GACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGG
* *
17571522 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTTAAACCTCGAGAACTCACACCCCCT
325 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
17571587 TAAAGGGCATTTGAAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
390 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
17571652 CTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATG
455 C-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATG
* ** * *
17571716 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CGAAAACTCCTTCCGAAAAAATTTT
519 CCAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTC-AAAACTCCTTTCGAAAAAACTTT
* ** ** * * * *
17571780 AAAAAATCTTGAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCA-
583 AAAAAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTG-CAT
*
17571844 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
647 TGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
17571909 CATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
712 CACGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATC
* * * * * * *
17571974 CCGTCTCCCTGGCCGGCGTA--G--CG--C--CCG--CCC-G--C--CCACTCATTTCGTCGGTT
777 CTGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCCCTGCCCTTCCGCTCGTTTCGTCAGTT
* * * *
17572024 GGCTTAGGCATACGGAGTTCATT-CGCAGTCTAAGATCAGATCGGACC-GACAGCAGGAT-AGGC
842 GGCTTAGGCATACGGAGTTCATTCCG-AGTCTAAGATCGGGTCAGACCAG-CAACAGGATCA-GC
* * * * * * *
17572086 AGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGA-CCCTTTGGTCGGCTGAGC
1 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTAT-CCTACCCCTCTGGCCGGCTGAGT
* * *
17572150 GCCCGCACGCTCGTTTCATGGGTTGTCTTAGGCATACAGAGTTCATTCCTAGTCTAA-CATACGA
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * *
17572214 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTC-AGGC
130 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GC
* * * * *
17572278 ATGTGCTGGTGCCGCTTTTTTCTTCATCGGGG-ACCATTGAT-GGAGCATCGCCGGAGAACCTGA
194 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-TCGAAGCATCGCCGGAGAACATGA
* * * *
17572341 CCGACAGCATTGGGGTTCTGACGATCGGGGAGGCC--AGGGGGTGTGTACACATGATGTGCGATG
258 CCGACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATG
* * * * * *
17572404 GGTGCTGGTACTTGGCTCTTATATTTGCACCCTATCCCTCATCAAACCTTGAGAACTCAGACCCA
323 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17572469 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
388 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17572534 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCAT
453 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCAT
17572599 GCCAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTCAAAACTCCTTTCGAAAAAACTTT
518 GCCAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTCAAAACTCCTTTCGAAAAAACTTT
17572664 AAAAAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCATT
583 AAAAAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCATT
17572729 GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
648 GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
17572794 ACGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCC
713 ACGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCC
17572859 TGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCCCTTCCGCTCGTTTCGTCAGTT
778 TGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCC-CCTGCCCTTCCGCTCGTTTCGTCAGTT
17572924 GGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCGGGTCAGACCAGCAACAGGATCAGC
842 GGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCGGGTCAGACCAGCAACAGGATCAGC
* *
17572986 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGTATCCTACCCCTCTGGCCGGTTGAGTG
1 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCCCTCTGGCCGGCTGAGTG
* * *
17573051 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
*
17573116 GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCAT
131 GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT
* * **
17573181 GTGCTGGTGTCGCATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGTTGGAGAACATGACCG
196 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACATGACCG
* ** * *
17573246 ACAGCATTGGTGTTCCGACAATCGGGGGGGCCGGAGGGGGCATGCGCACATGATGTGTGATGGGT
261 ACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGT
*
17573311 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
326 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
17573376 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACAC
391 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
17573440 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCC
456 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCC
17573505 AACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTCAAAACTCCTTTCGAAAAAACTTTAAA
521 AACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTCAAAACTCCTTTCGAAAAAACTTTAAA
17573570 AAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCATTGAA
586 AAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCATTGAA
17573635 ACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
651 ACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
17573700 CAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCTGT
716 CAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCTGT
*
17573765 CTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCACCTACCCTTCCGCTCGTTTCGTCAGTTGGC
781 CTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCC-CCTGCCCTTCCGCTCGTTTCGTCAGTTGGC
* *
17573830 TTAGGCATACGGAGTTCATTCCGAGTCTAAGATTGGG-CTGAACCAGCAACAGGATCAGC
845 TTAGGCATACGGAGTTCATTCCGAGTCTAAGATCGGGTCAG-ACCAGCAACAGGATCAGC
* *
17573889 AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGTG
1 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCCCTCTGGCCGGCTGAGTG
* * * *
17573954 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATATGGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* *
17574019 GTTCATTCCCAGTCCAAGATCGGACCGGATCGAGGGTTACGGCAACACATGCTGGGCTCGAGCAT
131 GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT
* * * *
17574084 GTGCCGGTGCCGCATTTTTCTTCACCGGGGCATCATCGTCAAAGCATCGCTGGAGAACATGACCG
196 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACATGACCG
** *
17574149 GTAGCATTGGTGTT-CGACAATC-GGGGGGCCGGA
261 ACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGA
17574182 NNNNNNNNNN
Statistics
Matches: 1906, Mismatches: 156, Indels: 55
0.90 0.07 0.03
Matches are distributed among these distances:
883 47 0.02
884 408 0.21
885 1 0.00
886 56 0.03
887 88 0.05
888 106 0.06
889 2 0.00
890 1 0.00
892 3 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 1 0.00
899 3 0.00
900 170 0.09
901 110 0.06
902 65 0.03
903 702 0.37
904 139 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCCCTCTGGCCGGCTGAGTG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACATGACCG
ACAGCATTGGGGTTCCGACAATCGGGGGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAAATTGGGGTCAAAACTCCTTTCGAAAAAACTTTAAA
AAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCATTGAA
ACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCTGT
CTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCCCTGCCCTTCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCGAGTCTAAGATCGGGTCAGACCAGCAACAGGATCAGC
Found at i:17576155 original size:26 final size:26
Alignment explanation
Indices: 17576119--17576171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17576109 GTTGACTTAG
17576119 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17576145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17576171 G
1 G
17576172 TCAGACCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17576714 original size:6 final size:6
Alignment explanation
Indices: 17576703--17576731 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
17576693 TAGTTAAAGA
17576703 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
17576732 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:17576857 original size:59 final size:58
Alignment explanation
Indices: 17576766--17576942 Score: 255
Period size: 58 Copynumber: 3.0 Consensus size: 58
17576756 TCTTGTGTAG
*
17576766 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* * * *
17576825 GGAAAATTGATACTTTCAACTTCTCCCAAAAAATATTTTTTTAAAAATATATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
17576883 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGGAAATTTTGATTTTTA
1 GAAAAATTGATACTTTCAACTTTTCCC-AAAAA-ATATTTTTTTGAAAATTT-ATTTTTA
17576943 TTTAAAGAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
58 46 0.44
59 37 0.36
60 14 0.13
61 7 0.07
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (58 bp):
GAAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:17576872 original size:14 final size:14
Alignment explanation
Indices: 17576853--17576882 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
17576843 ACTTCTCCCA
*
17576853 AAAAATATTTTTTT
1 AAAAATATATTTTT
17576867 AAAAATATATTTTT
1 AAAAATATATTTTT
17576881 AA
1 AA
17576883 GAAAAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAAATATATTTTT
Found at i:17576977 original size:17 final size:17
Alignment explanation
Indices: 17576957--17577007 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
17576947 AAGAAAATAG
17576957 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
17576974 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
17576992 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
17577008 TTAAGAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:17577066 original size:23 final size:22
Alignment explanation
Indices: 17577040--17577082 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
17577030 AACCTAATCT
17577040 AATAAATAAAAAAACAAAAAACA
1 AATAAATAAAAAAA-AAAAAACA
* *
17577063 AATAAATGAAAATAAAAAAA
1 AATAAATAAAAAAAAAAAAA
17577083 TTCAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (22 bp):
AATAAATAAAAAAAAAAAAACA
Found at i:17577507 original size:11 final size:11
Alignment explanation
Indices: 17577467--17577507 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
17577457 TCTAGGTTTC
*
17577467 TTCACTGGAAG
1 TTCACCGGAAG
*
17577478 TTCACCGAAAG
1 TTCACCGGAAG
17577489 TTCACCGGAAG
1 TTCACCGGAAG
*
17577500 GTCACCGG
1 TTCACCGG
17577508 CTTCTGGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:17578103 original size:21 final size:21
Alignment explanation
Indices: 17578079--17578232 Score: 79
Period size: 21 Copynumber: 7.2 Consensus size: 21
17578069 ACAAGAAAAT
17578079 AATAAAAATAATAAAATAATA
1 AATAAAAATAATAAAATAATA
* *
17578100 AATAAATTATAAT-ATATAATA
1 AATAAA-AATAATAAAATAATA
* *
17578121 AATATAGAACTATATAAATAAAATA
1 AATA-A-AAATA-ATAAA-ATAATA
* * *
17578146 CATATAAATATTAACAA-AATA
1 AATAAAAATAATAA-AATAATA
*
17578167 AATAAATA-AAT-AAATAATA
1 AATAAAAATAATAAAATAATA
* *
17578186 AGTAAAAAT-AT-ACAT-ATA
1 AATAAAAATAATAAAATAATA
17578204 ATATAATAAATAATAAAAATACATA
1 A-ATAA-AAATAAT-AAAATA-ATA
17578229 AATA
1 AATA
17578233 CAAAGAAAAG
Statistics
Matches: 98, Mismatches: 19, Indels: 29
0.67 0.13 0.20
Matches are distributed among these distances:
18 6 0.06
19 19 0.19
20 6 0.06
21 28 0.29
22 12 0.12
23 11 0.11
24 4 0.04
25 12 0.12
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (21 bp):
AATAAAAATAATAAAATAATA
Found at i:17578105 original size:4 final size:4
Alignment explanation
Indices: 17578075--17578232 Score: 60
Period size: 4 Copynumber: 38.2 Consensus size: 4
17578065 TATTACAAGA
* *
17578075 AAAT -AAT AAAA ATAAT AAA- ATAAT AAAT AAAT -TAT AATAT ATAAT
1 AAAT AAAT AAAT A-AAT AAAT A-AAT AAAT AAAT AAAT AA-AT A-AAT
* * * * *
17578120 AAAT ATAG AACT ATAT AAAT AAAAT ACATAT AAAT -ATT AACA- AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT A-A-AT AAAT AAAT AA-AT AAAT
* *
17578166 AAAT AAAT AAAT AAAT -AAT AAGT AAA- AATAT ACAT ATAAT ATAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT A-AAT A-AAT AAAT
* *
17578215 AATAA AAAT ACAT AAAT A
1 AA-AT AAAT AAAT AAAT A
17578233 CAAAGAAAAG
Statistics
Matches: 114, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
3 14 0.12
4 68 0.60
5 28 0.25
6 4 0.04
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:17578113 original size:17 final size:17
Alignment explanation
Indices: 17578077--17578142 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
17578067 TTACAAGAAA
17578077 ATAATAA-AAAT-AA-T
1 ATAATAATAAATAAATT
*
17578091 AAAATAATAAATAAATT
1 ATAATAATAAATAAATT
17578108 ATAAT-ATATAATAAATAT
1 ATAATAATA-AATAAAT-T
*
17578126 AGAACTATATAAATAAA
1 ATAA-TA-ATAAATAAA
17578143 ATACATATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
14 6 0.15
15 4 0.10
16 5 0.12
17 12 0.29
18 4 0.10
19 1 0.02
20 6 0.15
21 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
ATAATAATAAATAAATT
Found at i:17578234 original size:8 final size:7
Alignment explanation
Indices: 17578079--17578229 Score: 70
Period size: 7 Copynumber: 21.7 Consensus size: 7
17578069 ACAAGAAAAT
17578079 AATAA-A
1 AATAATA
17578085 AATAATAA
1 AATAAT-A
17578093 AATAATA
1 AATAATA
17578100 AATAA-A
1 AATAATA
*
17578106 TTATAATA
1 -AATAATA
*
17578114 TATAATA
1 AATAATA
17578121 AAT-ATA
1 AATAATA
17578127 GAACTATATA
1 -AA-TA-ATA
17578137 AATAA-A
1 AATAATA
*
17578143 ATACATATA
1 A-ATA-ATA
*
17578152 AATATTA
1 AATAATA
*
17578159 ACAAAATA
1 A-ATAATA
17578167 AATAA-A
1 AATAATA
*
17578173 TA-AATA
1 AATAATA
17578179 AATAATA
1 AATAATA
*
17578186 AGTAA-A
1 AATAATA
17578192 AAT-ATA
1 AATAATA
*
17578198 CAT-ATA
1 AATAATA
17578204 ATATAATA
1 A-ATAATA
17578212 AATAATA
1 AATAATA
17578219 AA-AATA
1 AATAATA
*
17578225 CATAA
1 AATAA
17578230 ATACAAAGAA
Statistics
Matches: 112, Mismatches: 15, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
5 3 0.03
6 29 0.26
7 50 0.45
8 23 0.21
9 4 0.04
10 3 0.03
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (7 bp):
AATAATA
Found at i:17578438 original size:1 final size:1
Alignment explanation
Indices: 17578427--17578483 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
17578417 AACATTGTCA
* * * * * * *
17578427 TTTTTTGTTTTTTTTTATGTCTTTTTTTTGTTTTTTGTTTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
17578484 CACCAAAGCT
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:17578441 original size:9 final size:9
Alignment explanation
Indices: 17578427--17578480 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
17578417 AACATTGTCA
17578427 TTTTTTGTT-
1 TTTTTT-TTG
17578436 TTTTTTTATG
1 TTTTTTT-TG
17578446 TCTTTTTTT-
1 T-TTTTTTTG
*
17578455 TGTTTTTTG
1 TTTTTTTTG
17578464 TTTTTTTTG
1 TTTTTTTTG
17578473 TTTTTTTT
1 TTTTTTTT
17578481 TTTCACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 7 0.18
9 24 0.62
10 2 0.05
11 6 0.15
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.87
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:17578460 original size:18 final size:16
Alignment explanation
Indices: 17578446--17578483 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
17578436 TTTTTTTATG
17578446 TCTTTTTTTTGTTTTT
1 TCTTTTTTTTGTTTTT
*
17578462 TGTTTTTTTTGTTTTT
1 TCTTTTTTTTGTTTTT
17578478 T-TTTTT
1 TCTTTTT
17578484 CACCAAAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (16 bp):
TCTTTTTTTTGTTTTT
Found at i:17578917 original size:43 final size:41
Alignment explanation
Indices: 17578491--17578916 Score: 576
Period size: 41 Copynumber: 10.1 Consensus size: 41
17578481 TTTCACCAAA
* * *
17578491 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAATATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATT
* *
17578534 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
17578575 GCTTCTCTAAACAGAGGCACCACGACTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
17578615 GCTCCTCTAAACAGAGGCACCACGACCTTTGG-AAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGA-CTTTGGAAAGTAAATT
*
17578656 GCTCCTCTAAACAGAGGCACCCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CCACGACTTTG-GAAAGTAAATT
*
17578699 GCTCCCTCTAAACAGAGGCACCACGACTTTTGAAAAGT-AATT
1 GCT-CCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
17578741 GCTTCCTCTAAACAGAGGCA-CACGACTTTTGGAAAGTAAATT
1 GC-TCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
17578783 GCTCC-CTAAACAGAGGCAACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGC-ACCACGACTTTG-GAAAGTAAATT
*
17578825 ACTCCTCCTACCAACAGAGGCACCACGACTTTGGAAA-TAAATT
1 GCTCCT-CTA--AACAGAGGCACCACGACTTTGGAAAGTAAATT
17578868 GCTCCTTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCC-TCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
17578911 GCTCCT
1 GCTCCT
17578917 TGACAATCAA
Statistics
Matches: 354, Mismatches: 10, Indels: 39
0.88 0.02 0.10
Matches are distributed among these distances:
40 47 0.13
41 112 0.32
42 69 0.19
43 77 0.22
44 28 0.08
45 12 0.03
46 9 0.03
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:17580216 original size:15 final size:15
Alignment explanation
Indices: 17580180--17580212 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
17580170 CATTTTCTCA
17580180 TTTCTTTCTCTTTTT
1 TTTCTTTCTCTTTTT
17580195 TTTCTTTCT-TTTTT
1 TTTCTTTCTCTTTTT
17580209 TTTC
1 TTTC
17580213 CTTTTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTCTTTCTCTTTTT
Found at i:17584043 original size:59 final size:58
Alignment explanation
Indices: 17583951--17584246 Score: 416
Period size: 58 Copynumber: 5.0 Consensus size: 58
17583941 TCTTGTGTAG
17583951 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
17584010 GAAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAA
* **
17584068 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
***
17584128 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
17584186 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATA-TTTTTTTT-GAAAATTT-ATTTTTA
17584247 TTTAAAGAAA
Statistics
Matches: 211, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
57 3 0.01
58 92 0.44
59 55 0.26
60 47 0.22
61 7 0.03
62 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:17584179 original size:118 final size:117
Alignment explanation
Indices: 17583951--17584243 Score: 437
Period size: 118 Copynumber: 2.5 Consensus size: 117
17583941 TCTTGTGTAG
**
17583951 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAAGAAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGAAAA
* * *
17584015 ATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
* *
17584068 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTCCAAGAAAA
*
17584133 ATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCC-CAAAAAACACTTTTTTGAAAATTTATTTTTAA
*
17584186 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATA-TTTTTTTT-GAAAATTTGATTT
17584244 TTATTTAAAG
Statistics
Matches: 161, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
116 2 0.01
117 48 0.30
118 90 0.56
119 9 0.06
120 12 0.07
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGAAAAA
TTGATACTTTCAACTTTTCCCAAAAAACACTTTTTTGAAAATTTATTTTTAA
Found at i:17584273 original size:14 final size:14
Alignment explanation
Indices: 17584254--17584311 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
17584244 TTATTTAAAG
*
17584254 AAAATAGAATAATA
1 AAAATAGAAAAATA
17584268 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
17584282 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
17584297 AAAAT--AAAAATA
1 AAAATAGAAAAATA
17584309 AAA
1 AAA
17584312 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:17584281 original size:17 final size:17
Alignment explanation
Indices: 17584261--17584311 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
17584251 AAGAAAATAG
17584261 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
17584278 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
17584296 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
17584312 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:17584320 original size:17 final size:16
Alignment explanation
Indices: 17584298--17584337 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17584288 AGTAAAACAA
*
17584298 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
17584314 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
17584331 AAATAAA
1 AAATAAA
17584338 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:17585308 original size:3 final size:3
Alignment explanation
Indices: 17585302--17585349 Score: 51
Period size: 3 Copynumber: 14.7 Consensus size: 3
17585292 TTACAAGAAA
*
17585302 AAT AAT AAT AAT AAAT AAT AAT AAT AAAT AAAT TAT AAT ATAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AAT -AAT -AAT AAT AAT A-AT AAT AA
17585350 ATATAGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
3 27 0.68
4 13 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:17585320 original size:10 final size:10
Alignment explanation
Indices: 17585302--17585438 Score: 65
Period size: 10 Copynumber: 13.5 Consensus size: 10
17585292 TTACAAGAAA
17585302 AATAAT-AAT
1 AATAATAAAT
17585311 AATAA-ATAAT
1 AATAATA-AAT
17585321 AATAATAAAT
1 AATAATAAAT
*
17585331 AA-ATTATAAT
1 AATAATA-AAT
17585341 ATATAATAAAT
1 A-ATAATAAAT
* *
17585352 -AT-AGAACT
1 AATAATAAAT
17585360 ATATAAATAAAAT
1 A-AT-AAT-AAAT
17585373 ACAT-ATAAAT
1 A-ATAATAAAT
* * *
17585383 ATTAACAAAA
1 AATAATAAAT
*
17585393 AAAAATAAAT
1 AATAATAAAT
17585403 AAGTAA-AAAT
1 AA-TAATAAAT
17585413 -ATACATATAAT
1 AATA-ATA-AAT
17585424 AATAATAAAT
1 AATAATAAAT
17585434 AATAA
1 AATAA
17585439 AATACATAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 33
0.67 0.10 0.23
Matches are distributed among these distances:
8 6 0.06
9 13 0.14
10 49 0.51
11 15 0.16
12 7 0.07
13 6 0.06
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.29
Consensus pattern (10 bp):
AATAATAAAT
Found at i:17585321 original size:16 final size:16
Alignment explanation
Indices: 17585302--17585448 Score: 99
Period size: 16 Copynumber: 8.9 Consensus size: 16
17585292 TTACAAGAAA
17585302 AATAATAATAATAAAT
1 AATAATAATAATAAAT
17585318 AATAATAATAAATAAAT
1 AATAATAAT-AATAAAT
*
17585335 TATAATATATAATAAAT
1 AATAATA-ATAATAAAT
*
17585352 -ATAGA-ACTATATAAAT
1 AATA-ATAATA-ATAAAT
17585368 AA-AATACAT-ATAAAT
1 AATAATA-ATAATAAAT
* * * *
17585383 ATTAACAAAAAAAAAT
1 AATAATAATAATAAAT
*
17585399 AAATAAGTAAAAATATACAT
1 -AATAA-TAATAATA-A-AT
17585419 -ATAATAATAATAAAT
1 AATAATAATAATAAAT
17585434 AATAA-AATACATAAA
1 AATAATAATA-ATAAA
17585449 ATACAAAAGA
Statistics
Matches: 105, Mismatches: 11, Indels: 30
0.72 0.08 0.21
Matches are distributed among these distances:
15 17 0.16
16 39 0.37
17 34 0.32
18 12 0.11
19 1 0.01
20 2 0.02
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (16 bp):
AATAATAATAATAAAT
Found at i:17585433 original size:21 final size:21
Alignment explanation
Indices: 17585316--17585434 Score: 74
Period size: 21 Copynumber: 5.8 Consensus size: 21
17585306 ATAATAATAA
17585316 ATAATAATAATAAATA-A-ATT
1 ATAATAATAATAAATATACA-T
*
17585336 ATAATATATAATAAATATAGA-
1 ATAATA-ATAATAAATATACAT
17585357 ACT-AT-ATAAATAAA-ATACAT
1 A-TAATAAT-AATAAATATACAT
* * * * *
17585377 ATAAATATTAACAAAAAAAAAT
1 AT-AATAATAATAAATATACAT
17585399 A-AATAAGTAA-AAATATACAT
1 ATAATAA-TAATAAATATACAT
17585419 ATAATAATAATAAATA
1 ATAATAATAATAAATA
17585435 ATAAAATACA
Statistics
Matches: 77, Mismatches: 9, Indels: 25
0.69 0.08 0.23
Matches are distributed among these distances:
19 7 0.09
20 28 0.36
21 33 0.43
22 8 0.10
23 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (21 bp):
ATAATAATAATAAATATACAT
Found at i:17585443 original size:27 final size:27
Alignment explanation
Indices: 17585300--17585451 Score: 77
Period size: 27 Copynumber: 5.6 Consensus size: 27
17585290 TATTACAAGA
17585300 AAAATA-ATAATAATAAATAAT-AATAAT
1 AAAATACAT-ATAAT-AATAATAAATAAT
*
17585327 -AAATAAATTATAATATATAATAAAT-AT
1 AAAATACA-TATAATA-ATAATAAATAAT
* * *
17585354 AGAACTATATA-AATAA-AATACAT-AT
1 A-AAATACATATAATAATAATAAATAAT
* * * *
17585379 AAATATTAACAAAAAAAAATAAATAAGTAA-
1 AAA-A-T-ACATATAATAAT-AATAAATAAT
17585409 AAATATACATATAATAATAATAAATAAT
1 AAA-ATACATATAATAATAATAAATAAT
*
17585437 AAAATACATAAAATA
1 AAAATACATATAATA
17585452 CAAAAGAAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
24 2 0.02
25 9 0.09
26 8 0.08
27 39 0.40
28 22 0.23
29 6 0.06
30 10 0.10
31 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (27 bp):
AAAATACATATAATAATAATAAATAAT
Found at i:17586340 original size:26 final size:26
Alignment explanation
Indices: 17586304--17586356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17586294 GTTGACTTAG
17586304 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17586330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17586356 G
1 G
17586357 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17588143 original size:26 final size:26
Alignment explanation
Indices: 17588103--17588153 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17588093 TTGACTTAGG
* *
17588103 ATACAGAGTTGATTCCCAGTTTAAGC
1 ATACAGAGTTCATTCCCAGTGTAAGC
*
17588129 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACAGAGTTCATTCCCAGTGTAAG
17588154 ATCGGACCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTGTAAGC
Found at i:17590798 original size:26 final size:26
Alignment explanation
Indices: 17590762--17590814 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17590752 GTTGACTTAG
17590762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17590788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17590814 G
1 G
17590815 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17592569 original size:26 final size:26
Alignment explanation
Indices: 17592539--17592591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17592529 GTTGACTTAG
17592539 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17592565 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17592591 G
1 G
17592592 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17592970 original size:232 final size:230
Alignment explanation
Indices: 17592552--17593000 Score: 589
Period size: 232 Copynumber: 1.9 Consensus size: 230
17592542 TACGAAGTTC
* **
17592552 ATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGTCCGGATGAAGGGTTGCGAC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAATCCGGATGAAGGGTTGCGAC
* * * * ** *
17592617 AGCAAATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCACTGGGGCACCATCACCGTA
66 AGCAAATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTACACCCGGGCACCATCACCGAA
* * ** *
17592682 GCATCACCGAAGAACCTAACCGGCGGCATTGGGGTTTTGGTGATCAGGGGGCCGGGGGGCGTGTG
131 GCATCACCGAAGAACCTAACCGACGGCATTGGAGTTCCGGCGATCAGGGGGCC-GGGGG-GTGTG
*
17592747 CGCGCATGATGTACGATGGGTGCTGGTGCTTGACCCT
194 CGCACATGATGTACGATGGGTGCTGGTGCTTGACCCT
17592784 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAT-CGGA-GCAAGGGTTGCG
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AATCCGGATG-AAGGGTTGCG
* * * * * *
17592847 GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGCCCTGGCACTATCACCG
64 ACAGCAAATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTACACCCGGGCACCATCACCG
** * *
17592912 AAGCATCATTGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATC-GGGGAGCCGGGGGGTGT
129 AAGCATCACCGAAGAACCTAACCGACGGCATTGGAGTTCCGGCGATCAGGGG-GCCGGGGGGTGT
*
17592976 GCGCACATGATGTGCGATGGGTGCT
193 GCGCACATGATGTACGATGGGTGCT
17593001 TCTACTTGGC
Statistics
Matches: 187, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
230 27 0.14
231 10 0.05
232 149 0.80
233 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (230 bp):
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAATCCGGATGAAGGGTTGCGAC
AGCAAATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTACACCCGGGCACCATCACCGAA
GCATCACCGAAGAACCTAACCGACGGCATTGGAGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCG
CACATGATGTACGATGGGTGCTGGTGCTTGACCCT
Found at i:17593702 original size:26 final size:26
Alignment explanation
Indices: 17593673--17593725 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593663 GTTGACTTAG
*
17593673 GCATATGGAGTTCATT-CCGAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
17593699 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
17593725 G
1 G
17593726 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:17594612 original size:26 final size:26
Alignment explanation
Indices: 17594572--17594622 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17594562 TTGACTTAGG
*
17594572 CATATGGAGTCCATTCCTAGTCTAAA
1 CATATGGAGTCCATTCCCAGTCTAAA
*
17594598 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTCCATTCCCAGTCTAA
17594623 GATCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATATGGAGTCCATTCCCAGTCTAAA
Found at i:17596385 original size:26 final size:26
Alignment explanation
Indices: 17596349--17596401 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17596339 GTTGACTTAG
*
17596349 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17596375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17596401 G
1 G
17596402 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17596945 original size:903 final size:895
Alignment explanation
Indices: 17592784--17600532 Score: 9281
Period size: 902 Copynumber: 8.7 Consensus size: 895
17592774 GCTTGACCCT
* * * *
17592784 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGAGCAAGGGTTGCGGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGC
* * * * ** * ** *
17592849 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGCCCTGGCACTATCACCGAA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
** * * *
17592914 GCATCATTGGAGAACCTGACCGACGGCATTGGAGTTCCGGCGATCGGGGAGCCGGGGGGTGTGCG
130 GCATC-GCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCG
** *
17592979 CACATGATGTGCGATGGGTGCTTCTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCT
194 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
17593044 CGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
259 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17593109 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
324 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
17593174 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
389 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * *
17593239 CTTCCGAAAAAATTTTAAAAAATCCCGAAGCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
454 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
17593304 CGAGTCATCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
519 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * **
17593369 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTACCTGAACCCATATACCACCCTATCGATC
584 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
17593434 CATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTT
649 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTT
* * * * * * * * * *
17593499 CATCGATTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGACCGGACCGGACTGAGGGCTACA
710 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * ** * * *
17593564 GCAGTCA-GATCAGCAACACATAGAGCGGGACCCGGCCGATCCTCGGCTTGTGCATCCCACCCCT
775 GCAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCACCCCT
* * * * *
17593628 CTGGCAGGCTGAGCTCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTC
838 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
17593686 ATTCCGAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGC
* * **
17593751 AGCACATGCTAGGCTCACGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * *
17593816 GCATCGCTGGAGAACCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTATGCA
130 GCATCGC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCG
* ** *
17593881 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGAACCCTATCTCTCATCAAACCT
194 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
**
17593946 CGAGAACTCACACCTTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
259 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17594011 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
324 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
17594076 GAATTTTTTTGTGCATGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
389 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * *
17594141 CTTCCGAAAAAATTTTAAAAAATCCCGAAGCTCAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
454 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
17594206 CGAGTCATCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
519 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
17594271 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACTCACCTACCACCCTATCGATC
584 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** * * *
17594336 CACGGCTTGCGCATCCCGTCTCCCTGGCCGGTGTAGTACCCGCCCGCCCGCCCGTTCGTTTCGTC
649 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATC
* * * ** * * *
17594401 GGTTGGCTTAGGCATACGAAGTTCATTCCTACTCTAAGATCAGACTGGACCAAGGGTTGTGGTAG
714 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * * * *
17594466 CAAGATCGGCAGGACACAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCCCTTTAGC
779 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCACCCCTCTGGC
* * * *
17594531 CGACTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTCC
843 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17594584 ATTCCTAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGC
* ** *
17594649 AGCACATGCTGGGATTGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCAT--T----
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * **
17594708 G--T--CGGAGAACCTGACTGGCGGTATTGGGGTTCCGACAAACGAGGGGGTTGGGAAGGGTGTG
130 GCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGG--GGGTGTG
* *
17594769 TGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
192 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
17594834 CTCGAGAACTCACACCCCCTTAAAGAGTAGTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTA
257 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
17594899 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAG
322 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
17594964 TTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
387 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* * * * **
17595029 TCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAA
452 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
17595094 AACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
517 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
17595159 CATAAAAATGGCATTGGCATGCAAAAATATGAGGATGTGCCTAAACCCCATCTAGCCACCCTATC
582 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTA-CCACCCTAT-
* * * *
17595224 CGATACACGGC-TGCGCCATCCCGTCTCTCTGGTCGACGTAGTTGCCCCGCCCACCCCACAACCG
644 CGATCCACGGCTTGCG-CATCCCGTCTCTCTGGCCGACGTAG-TG-CCCGCCC-GCCCGC--CCG
* * * * **
17595288 CTCGTTTCATC-GTTGTCTTAGGTATACGGAGTTTCATTCCGCAGGTC-ACGATCAAACCA-ATT
703 CTCGTTTCATCGGTTGGCTTAGGCATACGGAG-TTCATTCC-CA-GTCTAAGATCAGACCAGACC
* * * *
17595350 TAGGGTTTGCGGTAGCAATGATCGGCAGCCACGCAAGAAGGGGGA-CCGGCCGATCCCGGCTTGC
765 GAGGG-TTGCGGCAGC-AGGATCGGCAG-CACGC-AG-AGGGGGACCCGACCGATCCCGGCTTGC
* * * *
17595414 GCATTCC-GCCCTCTGGCCGGTTTGAGTGCCCGCACGCTCGTTTCATCATGGGTTGTGAGCTTTA
825 GCATCCCACCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCG-TT--TCATGGG-T-TGA-C-TTA
*
17595478 GGCATAC-GACTTC
882 GGCATACGGAGTTC
* * * * *
17595491 ATTCCTAGTCGAAGCAATACGGAGTTC-TT-ACAGT-TAAGATCAGATGGACTGAGGGTT-CAGT
1 ATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCA--
* *
17595552 GCA-CACATGCT--GCTCAGG-ATGTGCTGGTGCCGCCCGGTATTT-TTC-T----------TC-
63 GCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG--C-ATTTTTCTTCGTCGGGGCACCATCG
* * * * * **
17595600 TC---G---C-CGGAGAACCTGATCGGTGGCCTT-GGTTTCCGGC-AT-AGGGGGCCCAGGGGTA
125 TCGGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT-
* * * *
17595655 GTGCGCACATGCTGTGTGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCA
189 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* ** * * *
17595720 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAAATTTGCCGCCAATACCCA
254 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* ** * * *
17595785 TTAAAGTATCCAAAATGGGGTCAC-TTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTT
319 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * **
17595849 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGCATCACGTCTACCAACTTTGGCACCAA
384 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
17595914 AAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATA
449 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
*
17595979 GAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
514 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
17596044 AGCCATAAAAATGGCATTGGCTTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
579 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
17596109 CGATTCACGGCTTACGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
644 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * *
17596174 TCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGT
709 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
** * * *
17596239 GGCAGCAGGATTAGCAGCACGCAGAGGAGGACCCGACCGATCCCAGACTTGCGCATCCCACCCGT
774 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCACCCCT
* *
17596304 CTGGTCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
838 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17596362 GTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGT
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGC
* * *
17596427 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * *
17596492 ACATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGCGGGT
130 GCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGG-C--CGGG-GGGT
* * ** * *
17596557 GTGCACACATGATGTGCGATGGGTACTACTACTTGGCCCCTATATTGGCCCCCTATCCTTCATCA
189 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
17596622 AACCTCGAGAAGTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
254 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17596687 TTAAAGTGTCTGAATTGGGGATAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
319 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
17596752 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAGGTTTGGGGCCAA
384 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * *
17596817 AACCCCTTGCGAAAAAATTTGAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCATGAAAAATA
449 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
*
17596882 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
514 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
17596947 AGCCATAAAAAAGGAATTGGCATGCAAAAATATGAAGACGTGCCTAAACCCACCTACCACCCTAT
579 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
17597012 TGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACCCG-T
644 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * ** ** * * * * *
17597076 TCGTCGGTTGGATTAGGTGTACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACTGAAGGATA
709 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTG
* * * ** * * *
17597140 CGGTAGCA-GAT--GCAGCAAC-CAGA-GGGGA-CCGACCTATCCCCAGCTTGCGTGTCTCGCAC
773 CGGCAGCAGGATCGGCAGC-ACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCACCC
* ** * * * *
17597199 TTGC-GGTTGGCT--GCGACCTGCATGCTCGTTTCGTGGGTTGACATTAGGCAT-CAGAGTTC
836 CT-CTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCATGGGTTGAC-TTAGGCATACGGAGTTC
* * * *
17597258 ATT-CCAGCCT-AGCATA-TGA--TCACTGCCAGTC---G---A-AC---CCGAGGGTTGC-GAC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCAG-C
* * * *
17597307 AGCACATGCTGGGCTC-GGCATGTGCTGGTGCC-AATCTTTCTTCATCGGGG-AACATC-TCGGA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
** * * * **
17597368 GC-TC-CAAAGAACCTGGGAACCGACAGCATTGGGGTTTCAACGATCGGGGGGGCCGGGGGGTGT
130 GCATCGCGGAGAACCT--G-ACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGT
* * * *
17597431 GTGCGCATGATGTGTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAA
191 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17597496 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
256 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
17597561 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTA
321 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
17597626 GCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGA-CCCTGTCTACCAAGTTTGGGGCCAAA
386 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAA
* * * * *
17597690 ACTCCTTCCGAAAAAATTTTAAAAAATCCTGGACTGCAAAAAGTTTCAAAAATCGTGAAAAATAG
450 AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
17597755 AAAATGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-CAA
515 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
17597819 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
580 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
17597884 GATCCACAGCTTCCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCACTCGTTT
645 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * *
17597941 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGACTAGACCAAGGGTTGCA
710 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * *
17598006 GTAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGAT-CC--C---CG------A---CT-T
775 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCACCCCTCT
** * * *
17598055 -----G-T----G-CATC-CGCTCGTTACCTGGGTTGACATAGGCATACGGAGTTC
840 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17598099 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGATGGTTGCGGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCAGC
*
17598164 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCA---T---
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGG
* * ** * * * *
17598222 --CA-C-CAGAGAACCTGACCGACAACATTAGGTTTTCGGCGATCGAGGGGGCC-GGGGGTGTTC
129 AGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGC
* * * *
17598282 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTTTTGGCTCCCTGTCCCTCATCAAACC
193 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
17598347 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCTATTAA
258 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17598412 AGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
323 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17598477 TGAATTTTTGTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
388 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * *
17598542 -CTATTCAAAAAAATTTTCAAAAATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAA
453 CCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
17598605 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGC
517 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * * * * *
17598670 CATAAAAATGGCCCTGGCACGTAGAAATATTAAGATGTGCCTAAACCCACCTGCCACCCCATCGA
582 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
17598735 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCG-TTCA
647 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCA
* * * ** **
17598799 TTTGGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCAGAACAGATTGAGAATT
712 -----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
** * * * * ** ** *
17598864 ATGGCAGCAGGATCGGCAACACGTAAAGGGGGACTCGGTCGATCCCCTACTTTCGCATCCCACCC
772 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCACCC
* * *
17598929 CTCTGGCCGGCTGAACGCCCGCTA-GCTCATTT-AGTGGGTTGACTTAGGCATACGGAGTTT
836 CTCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17598989 ATT-CCAGTCTAAGCGTACGAAATTCTTTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCAGC
* * * * * * *
17599053 AACAAATGTTGGGCTCAGGCATGTGCTTGTGCCGTATTTTTCTTC-ACTGGGGCACCAT-GACCG
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCG-TCG
* * * *
17599116 GAGTATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGTGT
128 GAGCATC-GCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGT
* * * *
17599181 GCGAACTTGATGTGCGGTGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
191 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
17599246 CGTTGAGAACTCACA-CCCCTTCAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCAT
256 CCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
17599310 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTT
320 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
17599375 AGCTGAATGTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCAACCAGGTTTGGGGCCAAA
385 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
17599440 ACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACCGTAGAAAGTTTCAAAAATCAAGAAAAATAG
450 AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
17599505 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAA
515 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
17599570 GCCATAAAAATGGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
580 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
17599635 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAATGCCCGCCCACCCGTCCGCCCGCTC
645 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCTC
* * * *
17599700 GTTTCGTCCGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
706 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* ** ** * * * *
17599765 T-CTGGCAGCAGGATCGACAGCACGCAGACAGGGACCCGGTCGATCCCTGGCTTGAGCAACTCGC
771 TGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCAC
* * * * * * *
17599829 CCCTCTGGGCGGCTGAGCGCCTGCATGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
834 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
17599891 ATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCACACCGGACAGAGGTTTACAGC
1 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGC
* * * * *
17599956 AGCACATGATTGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* *
17600021 GGATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGC
130 GCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGC
17600085 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
193 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17600150 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCTATTAA
258 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17600215 AGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
323 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
17600280 TGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTTGGGACAAAAAT
388 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * ** *
17600345 CCTTCCGAAAAAATTTTAAAAAACCCCGAACTGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAA
453 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
17600410 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCC
518 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17600475 ATAAAGATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCAACCACCC
583 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
17600533 ACGGAGTTCA
Statistics
Matches: 5901, Mismatches: 734, Indels: 424
0.84 0.10 0.06
Matches are distributed among these distances:
840 7 0.00
841 27 0.00
842 8 0.00
843 6 0.00
844 3 0.00
846 11 0.00
847 1 0.00
848 86 0.01
849 376 0.06
850 31 0.01
851 1 0.00
853 14 0.00
856 4 0.00
857 38 0.01
858 19 0.00
859 13 0.00
860 3 0.00
861 82 0.01
862 2 0.00
863 14 0.00
864 57 0.01
865 6 0.00
866 2 0.00
867 9 0.00
868 7 0.00
869 8 0.00
870 21 0.00
871 123 0.02
872 362 0.06
873 22 0.00
874 30 0.01
875 15 0.00
876 53 0.01
877 55 0.01
878 36 0.01
879 37 0.01
880 53 0.01
881 18 0.00
882 4 0.00
883 9 0.00
884 4 0.00
885 33 0.01
886 14 0.00
887 39 0.01
888 280 0.05
889 241 0.04
890 447 0.08
891 16 0.00
892 16 0.00
893 43 0.01
894 26 0.00
895 34 0.01
896 46 0.01
897 58 0.01
898 302 0.05
899 34 0.01
900 67 0.01
901 320 0.05
902 1605 0.27
903 495 0.08
904 32 0.01
905 13 0.00
906 21 0.00
907 23 0.00
908 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCAGCA
GCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
CATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
Found at i:17598115 original size:26 final size:26
Alignment explanation
Indices: 17598086--17598138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17598076 GTTGACATAG
17598086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17598112 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17598138 G
1 G
17598139 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17599907 original size:26 final size:26
Alignment explanation
Indices: 17599878--17599930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17599868 GTTGACTTAG
17599878 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
17599904 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17599930 G
1 G
17599931 ATCACACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17601458 original size:26 final size:26
Alignment explanation
Indices: 17601427--17601479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17601417 GTTGACTTAG
* *
17601427 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
17601453 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
17601479 G
1 G
17601480 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:17603169 original size:824 final size:823
Alignment explanation
Indices: 17601582--17603179 Score: 2353
Period size: 824 Copynumber: 1.9 Consensus size: 823
17601572 ATCGTCGAAA
** * * * * *
17601582 AACCTGACCGACGGTATTGTGGTTTCGGCGATCGAAGGGGGCCAGGGGGTGTGAACGCATGATGT
1 AACCTGACCGACGACATTGGGGTTCCGGAGATCGAAGGGGCCCAGGGGGTGTGAACACATGATGT
** * *
17601647 GCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGTACTCA
66 GCGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
17601712 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAATAATTAAAGTGTCTGAAA
131 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAAA
***
17601777 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
196 TGGGGACAAAATTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
17601842 GTGCACGCCAACAAAAATACAATGATCACGTCTACCAAGTTTAGGACTAGAACTCTTTCCAAAAA
261 CTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCTTTCCAAAAA
* * * * * **
17601907 AATTTTAAAAAATCTCGAACCCCAAAATGTTTTGAAAATCGTGAAAAGTAGAAAATGAGTTGTCT
326 AATTTTAAAAAATCCCAAACCCCAAAATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCT
*
17601972 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGC
391 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17602037 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
456 ATTGGCA-GCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
* ** ** * *
17602102 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCAGCCCGCCCGCTCGTTTTGTCGGTTGG
520 ACATCCCGTCTCTCTGGCCGACGTAAAGCCCACCCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGG
* *** ** * *
17602167 CTTAGGCATACGGGTTCTTTCCCAATCTAAGATTGGACCAGACGGACGGTTGCGGTAGCAGGATC
585 CTTAGGCATACGGGTTCATTCCCAATCTAAGATCAAACCAGACCAACGGTTGCAGCAGCAGGATC
* * * *
17602232 GACAGCACACAGAAGGGGACCCGACCGATCCTCGACTTCCGCATCTCGCCCCTCTTGCCGGCTGA
650 GACAGCACACAGAAGGGGACCCGACCGATCCCCGACTTCCGCATCCCACCCCTCTGGCCGGCTGA
* * *
17602297 GCGCCCGCTCGCTCGTTTTACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCGA
715 GCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAACATCGA
17602362 ACCAGGCCGAGGGCTACAACAGCACATACTAGGCTCGGGCGAGG
780 ACCAGGCCGAGGGCTACAACAGCACATACTAGGCTCGGGCGAGG
* **
17602406 AACCTGACCGACGACATTGGGGTTCCGGAGATCG-TGGGGCCCAGGGGGGTGTGCGCACATGATG
1 AACCTGACCGACGACATTGGGGTTCCGGAGATCGAAGGGGCCCA-GGGGGTGTGAACACATGATG
* * *
17602470 TGTGATGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTC
65 TGCGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
17602535 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
130 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAA
*
17602600 ATGGGGATAAAATTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTT
195 ATGGGGACAAAATTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTT
* * * * *
17602665 TCTGCAAGCCAAAAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAATTTCTTT-CAAA
260 TCTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAA-CTCTTTCCAAA
*
17602729 AAAATTTTAAAAAATCCCAAACCGCAAAGA-GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCA
324 AAAATTTTAAAAAATCCCAAACCCCAAA-ATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCA
* * *
17602793 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAATT
388 TCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
17602858 GGCATTGGCA-CATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
453 GGCATTGGCAGCA-A-AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGC
* *
17602922 TTGCACATCCCGTCTCTCTGGCCGACGTAAAGCCCGCCCGCCCA-TCCGCCCGCTCGTTTCGTCA
516 TTGCACATCCCGTCTCTCTGGCCGACGTAAAGCCCACCCG-CCAGCCCGCCCGCTCGTTTCGTCA
*
17602986 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAGCAGC
580 GTTGGCTTAGGCATACGG-GTTCATTCCCAATCTAAGATCAAACCAGACCAACGGTTGCAGCAGC
* * * *
17603051 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT-CGTATCCCACCCCTCTGGCC
644 AGGATCGACAGCACACAGAAGGGGACCCGACCGATCCCCGACTTCCGCATCCCACCCCTCTGGCC
* *
17603115 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAA
709 GGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
17603180 GCATATGAAG
Statistics
Matches: 686, Mismatches: 81, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
822 2 0.00
823 8 0.01
824 590 0.86
825 86 0.13
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (823 bp):
AACCTGACCGACGACATTGGGGTTCCGGAGATCGAAGGGGCCCAGGGGGTGTGAACACATGATGT
GCGATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTAAAA
TGGGGACAAAATTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
CTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCTTTCCAAAAA
AATTTTAAAAAATCCCAAACCCCAAAATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCT
TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCAGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCA
CATCCCGTCTCTCTGGCCGACGTAAAGCCCACCCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGGC
TTAGGCATACGGGTTCATTCCCAATCTAAGATCAAACCAGACCAACGGTTGCAGCAGCAGGATCG
ACAGCACACAGAAGGGGACCCGACCGATCCCCGACTTCCGCATCCCACCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAACATCGAA
CCAGGCCGAGGGCTACAACAGCACATACTAGGCTCGGGCGAGG
Found at i:17605621 original size:904 final size:903
Alignment explanation
Indices: 17602405--17607799 Score: 7159
Period size: 898 Copynumber: 6.0 Consensus size: 903
17602395 CTCGGGCGAG
* * * * *
17602405 GAACCTGACCGACGACATTGGGGTTCCGGA-GATCGTGGGGCCCAGGGGGGTGTGCGCACATGAT
1 GAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* ** * **
17602469 GTGTGATGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
17602534 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *** *
17602599 AATGGGGATAAAATTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
17602664 TTCTGCAAGCCAAAAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAATTTCTTTCAAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * *
17602729 AAAATTTTAAAAAATCCCAAACCGCAAAGAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCAT
325 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17602794 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAATTG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
17602859 GCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
455 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
17602924 GCACATCCCGTCTCTCTGGCCGACGTAAAGCCCGCCCGCCCATCCGCCCGCTCGTTTCGTCAGTT
520 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCT-GTTTCGTCGGTT
* * ** * *
17602989 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAGCAGG
* * * * * *
17603054 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT-CGTATCCCACCCCTCTGGCCGGC
649 ATCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* *
17603118 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAAGCA
714 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
17603183 TATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCATATGCTGGGCTC
779 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *** * *
17603248 GAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGAACCATTGCCAGAGCATCATCGGA
844 GAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGA
* * * *
17603308 GAACCTGATCGGTGGCATTGTGGTTCC-AGCGATTAGGGGGCGG--GGGGGCGGTGTGCGCACAT
1 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGA-TCGGGGG-GGCCGGGGG-GGTGTGCGCACAT
* * * *
17603370 GATGTGTGATGGGTGCTGGTACTTGGCCCCTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGA
62 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
17603435 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTT
127 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
17603500 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATT
192 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
17603565 TTTTTGTGCATGCCAACAAAAGTACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
257 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * * * * * *
17603630 GAAAAAATTTTAAAAAATCTCAAACTGCAAACAGTTTTGAAAATCGTGAAAAACAGAAAAC-AGG
322 AAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA-G
*
17603694 TCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
386 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17603759 AATGGCATTGGCATGCAAAAATATGAAGATATGCCTTAACCCACCTACCACCCTATCGATCCACG
451 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* **
17603824 GCTTGCGCATCCCGTCTCTCTGGCCAACGTAGT----GCCCGCCCGTCCG--TTC-GTTTCGTCG
516 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTGTTTCGTCG
* ** *
17603882 GTTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATTGGACCAGACTGAGCGTTACGGCAGC
581 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAGC
* * * * *
17603946 AGGATC-AGCAGCACGTAGAGGGAGAAC-CGATCGATCCCCGACTTGCGCATCTCGCCCCTCTGG
646 AGGATCGA-CAGCACGCAGAGGG-GGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
17604009 TCGGCTGAACGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCT
709 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
17604074 AAGCATACAGAGTTCATTCCTAGTCTAAAATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTG
774 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTG
* * * * * * * *
17604139 GGCTCGAGCATATGCCGGTGTCGTATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCGCCGGA
839 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGA
* * *
17604204 GAACCTGACCGGTGGCATTGGGGTTCCGACGAT-TGGGGGGTC-GGGGGGTGTGCGCACATGATG
1 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
17604267 TGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
17604332 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17604397 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17604461 TGTGCAAGCCAAAAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
261 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * * *
17604526 AATTTTTAAAAAATCCCAAACCGCAAAAAGATTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
326 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
17604591 TTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
391 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
17604656 CATTTTCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
456 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** *
17604721 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCCTGTTTCGTCGGTTG
521 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCG-CTGTTTCGTCGGTTG
* * * ** * *
17604786 GC-TAGGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAGCACTACAGTAGTAGG
585 GCTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAGCAGG
* * * * * *
17604850 ATTGACAACAAGCAGAGGGGGACTCGACCGATGCCTGGCTTGCGCATCTCGCCCCTCTGGTCGGC
649 ATCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* * * * *
17604915 TGAGCGCCCGAACGCTCATTTCATGTGTCGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCA
714 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * *
17604980 TACCGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGACAGCACATGCTGGGCTC
779 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
17605045 TG-GCATGTGCTGGTGCCACCTTTTTCTTTCGCCGGGGCACCATCACCGGAGCATCGTCGGA
844 -GAGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCATCGGAGCATCGTCGGA
* * *
17605106 GAACCTGACCAGCAGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
1 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *** * *
17605171 TGTGATGGGTGCTAGTACTTGGCCCTTATATTAAACCCGTATCCCTCATCAAACCTCCAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
17605236 ACACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17605301 ATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTTGAGCTTTTAGCTGAATGTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17605366 TGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTGCAAAA
261 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* *
17605431 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTC
326 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
17605496 TTGCAATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGG
391 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** *
17605561 CATTGGCATGGAAAAATATGAAGATGTGCCTAAACCCAATTACCA-CCTATCAATCCACGGCTTG
456 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17605625 CGCATCCCGTCTCTCTGGTCGACGTAGT----GCCTGCCCG-CC-CCC-TTATTTTGTCGGTTGG
521 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTGTTTCGTCGGTTGG
* **
17605683 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACGGGACTGAG-GCTTACAGCAGCAGGA
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCG-TTACAGCAGCAGGA
* *
17605747 TC-AGCAGCACGCAGAGGGGGAAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTTGG
650 TCGA-CAGCACGCAGAGGGGG-ACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGG
* *
17605810 CAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
713 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * ***
17605875 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAATAGCACATGCTGGGCT
778 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
17605940 CGTGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACAATCATCGGAGCTTCGTCGAA
843 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGA
* * * * *
17606001 GAACCTGACCGGCGACATTAGGGTTCC-AGTGATCGAGGGGGTCGGGGGGGCTGTGTGCGCACAT
1 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GGGGGGCCGGGGGG--GTGTGCGCACAT
* *
17606065 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGC
62 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * * *
17606130 ACTAACTCCCCCTTAAAGAGCATTCGATATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTC
127 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
17606195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
192 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
17606260 TTTTTGTACATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-A
257 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* *
17606324 AGAAAAAATTTTAAAAAATCCCAAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
322 A-AAAAAATTTTAAAAAATCCCAAACCGC-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGA
*
17606388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAA
385 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
17606453 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
450 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
17606518 GGCTTGCGCATCCCGTCTCCCTGGCCGACGTAGTTCCCGCCCGTCCGTCCG--CTC-GTTTCATC
515 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTGTTTCGTC
* ** * * * * *
17606580 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGATCGGACTGAGGGTTACGGTAG
580 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAG
* * * ** * * *
17606645 TAGGATCG-GAGCACGTAGAGGGGGACTCGGTCGATCCTCAGCTTGCGCATCCCACCCCTCTGG-
645 CAGGATCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
* * * * *
17606708 CTGACTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCTCAGTCT
710 C-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
17606773 AAGCGTACGGAGTTCATTCCCAATCTAAGATCGGA-CTGGACCGAGGGTTATGGCAGCACATGCT
774 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCAAGGGTTGCGGCAGCACATGCT
** * * * * * * *
17606837 ATGCCCGGGCATGTACTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGG
838 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGG
17606902 A
903 A
* * ** *
17606903 GAACCTGACCGACGGCATTGGGGTT-CGACGATC-GGGGGCCCTAGGGGGTGTGCCCACATGATG
1 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
17606966 TGCAATGGGTGCTGGTATTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
17607031 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCCGGTAGCCATTCAAGTGTCTGA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGA
*
17607096 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
17607161 TTGTGCATGCCGAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* ** * * *
17607226 AAAATTCTAAAAAATCCTGAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
325 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17607291 CTTGCCATGAAACGTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17607356 GCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTT
455 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
17607421 GCACATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTTGTCGATT
520 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCT-GTTTCGTCGGTT
* ** * ** * * * * *
17607486 GGCTTCGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCATG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAGCAGG
* * * * * *
17607551 ATCGGCAGCACGCAAAGGGGGACTCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGC
649 ATCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* *
17607616 TGAGTGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
714 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** * * * * *
17607681 TATGGAGTTCATTCCCAATCTAAGATTAGATCAGACTAAGGGTTACGGTAGCACATACTGGGATC
779 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
17607746 GGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC
844 GAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
17607800 ACCGAAAAAC
Statistics
Matches: 3940, Mismatches: 487, Indels: 130
0.86 0.11 0.03
Matches are distributed among these distances:
892 262 0.07
893 198 0.05
894 9 0.00
895 123 0.03
896 518 0.13
897 118 0.03
898 776 0.20
899 61 0.02
900 55 0.01
901 223 0.06
902 359 0.09
903 315 0.08
904 700 0.18
905 223 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTACAGCAGCAGGAT
CGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGA
Found at i:17605883 original size:26 final size:26
Alignment explanation
Indices: 17605847--17605899 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17605837 GTTGACTTAG
17605847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17605873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17605899 G
1 G
17605900 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17606788 original size:26 final size:26
Alignment explanation
Indices: 17606752--17606801 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17606742 GACTTAGTCA
* *
17606752 TACGGAGTTCATTCTCAGTCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
17606778 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
17606802 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:17607682 original size:26 final size:26
Alignment explanation
Indices: 17607652--17607704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17607642 GTTGACTTAG
*
17607652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17607678 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17607704 G
1 G
17607705 ATTAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17608397 original size:59 final size:61
Alignment explanation
Indices: 17608298--17608534 Score: 299
Period size: 60 Copynumber: 4.0 Consensus size: 61
17608288 TCTTGTGTAG
*
17608298 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGGAAACTTTGATTTTTAA
* * * **
17608357 GAAAAATTGATACTTTAAACTTTTCCTCAAAAATA-TTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGGAAACTTTGATTTTTAA
* * * *
17608417 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTT-CAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGGAAACTTTGATTTTTAA
* * *
17608475 GGAAAATTGATACTTTCAACTATTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATACTTTTTTTGGAAACTTTGATTTTTA
17608535 TTTAAAGAAA
Statistics
Matches: 151, Mismatches: 20, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
57 1 0.01
58 47 0.31
59 47 0.31
60 49 0.32
61 7 0.05
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (61 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGGAAACTTTGATTTTTAA
Found at i:17608485 original size:58 final size:59
Alignment explanation
Indices: 17608298--17608534 Score: 298
Period size: 59 Copynumber: 4.0 Consensus size: 59
17608288 TCTTGTGTAG
* *
17608298 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTTTAA
* * * * **
17608357 GAAAAATTGATACTTTAAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTT-ATTTTTAA
* * *
17608417 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTCAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTTTAA
* * *
17608475 GGAAAATTGATACTTTCAACTATTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATACTTTTTTT-GAAAATTT-ATTTTTA
17608535 TTTAAAGAAA
Statistics
Matches: 150, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
57 1 0.01
58 36 0.24
59 63 0.42
60 43 0.29
61 7 0.05
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTTTAA
Found at i:17608511 original size:118 final size:120
Alignment explanation
Indices: 17608298--17608531 Score: 357
Period size: 118 Copynumber: 2.0 Consensus size: 120
17608288 TCTTGTGTAG
* **
17608298 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTTATTTTTAAGAAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTCAAAATTTATTTTTAAGAAAAA
*
17608363 TTGATACTTTAAACTTTTCCTCAAAAATATTTTTTTT-GAAACTTTGATTTCCAA
66 TTGATACTTTAAACTTTCCCTCAAAAATATTTTTTTTGGAAACTTTGATTTCCAA
* * *
17608417 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTCAAAATTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTCAAAATTTATTTTTAAGAAAAA
* *
17608481 TTGATACTTTCAACTATTCCCT-AAAAATATTTTTTTTGGAAATTTTGATTT
66 TTGATACTTTAAACT-TTCCCTCAAAAATATTTTTTTTGGAAACTTTGATTT
17608532 TTATTTAAAG
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
118 55 0.53
119 49 0.47
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTCAAAATTTATTTTTAAGAAAAA
TTGATACTTTAAACTTTCCCTCAAAAATATTTTTTTTGGAAACTTTGATTTCCAA
Found at i:17608592 original size:17 final size:17
Alignment explanation
Indices: 17608552--17608659 Score: 53
Period size: 17 Copynumber: 6.4 Consensus size: 17
17608542 AAAATAGAAT
17608552 AATAAAAATAAAAAATA
1 AATAAAAATAAAAAATA
* *
17608569 AAGAAAAGTAAAACAA-A
1 AATAAAAATAAAA-AATA
* *
17608586 AAT-AAAATTAAAATTA
1 AATAAAAATAAAAAATA
* * *
17608602 AGATAAAAA-GAATATTA
1 A-ATAAAAATAAAAAATA
** **
17608619 AATAAACCTAATCTAATA
1 AATAAAAATAA-AAAATA
17608637 AATAAAAA-AAACAAATA
1 AATAAAAATAAA-AAATA
17608654 AATAAA
1 AATAAA
17608660 TAAATGAAAA
Statistics
Matches: 67, Mismatches: 17, Indels: 14
0.68 0.17 0.14
Matches are distributed among these distances:
15 1 0.01
16 14 0.21
17 36 0.54
18 16 0.24
ACGTcount: A:0.72, C:0.05, G:0.04, T:0.19
Consensus pattern (17 bp):
AATAAAAATAAAAAATA
Done.