Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 92 of 117
Found at i:17609661 original size:10 final size:10
Alignment explanation
Indices: 17609646--17609697 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
17609636 ATATTACAAG
17609646 AAAAATAATA
1 AAAAATAATA
17609656 AAAAATAAT-
1 AAAAATAATA
*
17609665 AATAATAATA
1 AAAAATAATA
*
17609675 AATAAATTATA
1 AA-AAATAATA
* *
17609686 ATATATAATA
1 AAAAATAATA
17609696 AA
1 AA
17609698 TATAGAACTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 8 0.24
10 18 0.55
11 7 0.21
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATAATA
Found at i:17609668 original size:16 final size:16
Alignment explanation
Indices: 17609649--17609679 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17609639 TTACAAGAAA
17609649 AATAATAAAAAATAAT
1 AATAATAAAAAATAAT
*
17609665 AATAATAATAAATAA
1 AATAATAAAAAATAA
17609680 ATTATAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAATAAAAAATAAT
Found at i:17609726 original size:17 final size:17
Alignment explanation
Indices: 17609649--17609730 Score: 57
Period size: 19 Copynumber: 4.7 Consensus size: 17
17609639 TTACAAGAAA
17609649 AATA-ATAAA-AAATAAT
1 AATATATAAATAAAT-AT
17609665 AATAATAATAAATAAATTAT
1 AAT-AT-ATAAATAAA-TAT
17609685 AATATAT-AATAAATAT
1 AATATATAAATAAATAT
17609701 AGAACTATATAAATAAA-AT
1 --AA-TATATAAATAAATAT
*
17609720 -ACATATAAATA
1 AATATATAAATA
17609731 TTAACAGAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 19
0.74 0.01 0.25
Matches are distributed among these distances:
15 9 0.16
16 7 0.12
17 7 0.12
18 4 0.07
19 14 0.25
20 14 0.25
21 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (17 bp):
AATATATAAATAAATAT
Found at i:17609795 original size:27 final size:27
Alignment explanation
Indices: 17609743--17609803 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
17609733 AACAGAAAAT
*
17609743 AAATAAATAAATAAGTAAAAATATACATA
1 AAAT-AAT-AATAAATAAAAATATACATA
*
17609772 TAATAATAATAAATAATAAA-ATACATA
1 AAATAATAATAAATAA-AAATATACATA
17609799 AAATA
1 AAATA
17609804 CAAAAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 19 0.68
28 6 0.21
29 3 0.11
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAATAATAAATAAAAATATACATA
Found at i:17610021 original size:9 final size:9
Alignment explanation
Indices: 17610007--17610057 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
17609997 AACATTGTCA
17610007 TTTTTTGTT
1 TTTTTTGTT
17610016 TTTTTTGTGT
1 TTTTTTGT-T
*
17610026 TTTTTT-TG
1 TTTTTTGTT
17610034 TTTTTTGTT
1 TTTTTTGTT
17610043 TTTGTTT-TT
1 TTT-TTTGTT
17610052 TTTTTT
1 TTTTTT
17610058 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
8 9 0.24
9 18 0.49
10 10 0.27
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:17610032 original size:13 final size:12
Alignment explanation
Indices: 17610014--17610057 Score: 63
Period size: 13 Copynumber: 3.7 Consensus size: 12
17610004 TCATTTTTTG
*
17610014 TTTTTTTTG-TG
1 TTTTTTTTGTTT
17610025 TTTTTTTTGTTT
1 TTTTTTTTGTTT
17610037 TTTGTTTTTGTTT
1 TTT-TTTTTGTTT
17610050 TTTTTTTT
1 TTTTTTTT
17610058 ACCAAAGCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 9 0.30
12 9 0.30
13 12 0.40
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:17610055 original size:11 final size:11
Alignment explanation
Indices: 17610007--17610056 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
17609997 AACATTGTCA
17610007 TTTTTTGTTTT
1 TTTTTTGTTTT
*
17610018 TTTTGTGTTTT
1 TTTTTTGTTTT
17610029 TTTTGTT-TTTT
1 TTTT-TTGTTTT
*
17610040 GTTTTTGTTTT
1 TTTTTTGTTTT
17610051 TTTTTT
1 TTTTTT
17610057 TACCAAAGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 2 0.06
11 30 0.91
12 1 0.03
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:17610157 original size:41 final size:40
Alignment explanation
Indices: 17610064--17610484 Score: 610
Period size: 41 Copynumber: 10.2 Consensus size: 40
17610054 TTTTACCAAA
* *
17610064 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT--GAAA-ATAAATT
*
17610107 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAATAAATT
17610148 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAATAAATT
* *
17610189 GCTCTTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTT-GAAAATAAATT
17610231 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAATAAATT
*
17610272 GCTCCTCTAAACA-AGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTT-GAAAATAAATT
17610313 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAATAAATT
17610354 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-TAAATT
*
17610396 GCTCCTCTAAACAGAGGCACTACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAATAAATT
* *
17610437 ACTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTT-GAAAATAAATT
17610479 GCTCCT
1 GCTCCT
17610485 TGACAATCAT
Statistics
Matches: 349, Mismatches: 15, Indels: 29
0.89 0.04 0.07
Matches are distributed among these distances:
40 19 0.05
41 192 0.55
42 109 0.31
43 26 0.07
44 3 0.01
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATT
Found at i:17610338 original size:165 final size:166
Alignment explanation
Indices: 17610064--17610484 Score: 731
Period size: 165 Copynumber: 2.5 Consensus size: 166
17610054 TTTTACCAAA
*
17610064 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
* *
17610129 TGACTTTT-GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTC
64 CGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTC
*
17610193 TTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATT
129 CTCTAAACAGAGGCACCACGAC-TTTGAGAAAGTAAATT
*
17610231 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACA-AGGCACCACG
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610295 ACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCT
66 ACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCT
17610360 CTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
131 CTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
* *
17610396 GCTCCTCTAAACAGAGGCACTACGACTTTGAAAAATAAATTACTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610461 ACTTTTGGAAAGTAAATTGCTCCT
66 ACTTTTGGAAAGTAAATTGCTCCT
17610485 TGACAATCAT
Statistics
Matches: 244, Mismatches: 7, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
164 19 0.08
165 159 0.65
166 37 0.15
167 29 0.12
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (166 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCT
CTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
Found at i:17610511 original size:83 final size:83
Alignment explanation
Indices: 17610064--17610484 Score: 731
Period size: 83 Copynumber: 5.1 Consensus size: 83
17610054 TTTTACCAAA
* *
17610064 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
* *
17610129 TGACTTTT-GAAAATAAATT
64 CGACTTTTGGAAAGTAAATT
*
17610148 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCTTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610213 ACTTTTGGAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
17610231 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACA-AGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610295 ACTTTTGGAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
17610313 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610378 AC-TTTGAGAAAGTAAATT
66 ACTTTTG-GAAAGTAAATT
* *
17610396 GCTCCTCTAAACAGAGGCACTACGACTTTGAAAAATAAATTACTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
17610461 ACTTTTGGAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
17610479 GCTCCT
1 GCTCCT
17610485 TGACAATCAT
Statistics
Matches: 325, Mismatches: 8, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
82 121 0.37
83 171 0.53
84 33 0.10
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGGAAAGTAAATT
Found at i:17611760 original size:17 final size:17
Alignment explanation
Indices: 17611735--17611777 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
17611725 AATCTCTTTT
*
17611735 TTTCATTTTCTCATTTC
1 TTTCTTTTTCTCATTTC
**
17611752 TTTCTTTTTCTTTTTTC
1 TTTCTTTTTCTCATTTC
17611769 TTTCTTTTT
1 TTTCTTTTT
17611778 TATTCCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCTTTTTCTCATTTC
Found at i:17611765 original size:22 final size:21
Alignment explanation
Indices: 17611760--17611816 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
17611750 TCTTTCTTTT
17611760 TCTTTTTTC-TTTCTTTTTTAT
1 TCTTTTTTCATTTCTTTTTT-T
* *
17611781 TCCTTTTTTCATCATCTTTTTTC
1 T-CTTTTTTCAT-TTCTTTTTTT
*
17611804 TCTTTTCTCATTT
1 TCTTTTTTCATTT
17611817 TTCATCCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 2 0.07
22 17 0.59
23 2 0.07
24 8 0.28
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTTTTTCATTTCTTTTTTT
Found at i:17611772 original size:11 final size:11
Alignment explanation
Indices: 17611748--17611804 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
17611738 CATTTTCTCA
*
17611748 TTTCTTTCTT-
1 TTTCTTTTTTC
17611758 TTTCTTTTTTC
1 TTTCTTTTTTC
*
17611769 TTTCTTTTTTA
1 TTTCTTTTTTC
*
17611780 TTCCTTTTTTC
1 TTTCTTTTTTC
*
17611791 ATCATCTTTTTTC
1 -T-TTCTTTTTTC
17611804 T
1 T
17611805 CTTTTCTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
10 9 0.24
11 19 0.50
12 2 0.05
13 8 0.21
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:17615772 original size:58 final size:59
Alignment explanation
Indices: 17615682--17615858 Score: 284
Period size: 58 Copynumber: 3.0 Consensus size: 59
17615672 TCTTGTGTAG
17615682 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTGATTTTTAA
* **
17615740 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTGATTTTTAA
* *
17615799 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTT-GAAAATTTGATTTTTA
17615859 TTTAAAGAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
58 49 0.45
59 40 0.37
60 7 0.06
61 13 0.12
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTGATTTTTAA
Found at i:17615899 original size:17 final size:17
Alignment explanation
Indices: 17615879--17615922 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
17615869 ATAGAATAAT
17615879 AAAAATAAAA-AATAAAG
1 AAAAATAAAACAA-AAAG
* *
17615896 AAAAGTAAAACAAAAAT
1 AAAAATAAAACAAAAAG
17615913 AAAAATAAAA
1 AAAAATAAAA
17615923 TTAAGATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAATAAAACAAAAAG
Found at i:17615931 original size:17 final size:16
Alignment explanation
Indices: 17615909--17615948 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17615899 AGTAAAACAA
*
17615909 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
17615925 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
17615942 AAATAAA
1 AAATAAA
17615949 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:17616910 original size:16 final size:16
Alignment explanation
Indices: 17616891--17616929 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
17616881 AAGATAGGAT
17616891 AGATAAAAAAAAAATC
1 AGATAAAAAAAAAATC
* *
17616907 AGATATACAAAAAATC
1 AGATAAAAAAAAAATC
17616923 AGATAAA
1 AGATAAA
17616930 CGGAACAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (16 bp):
AGATAAAAAAAAAATC
Found at i:17617002 original size:10 final size:10
Alignment explanation
Indices: 17616987--17617038 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
17616977 ATATTACAAG
17616987 AAAAATAATA
1 AAAAATAATA
17616997 AAAAATAAT-
1 AAAAATAATA
*
17617006 AATAATAATA
1 AAAAATAATA
*
17617016 AATAAATTATA
1 AA-AAATAATA
* *
17617027 ATATATAATA
1 AAAAATAATA
17617037 AA
1 AA
17617039 TATAGAACTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 8 0.24
10 18 0.55
11 7 0.21
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATAATA
Found at i:17617009 original size:16 final size:16
Alignment explanation
Indices: 17616990--17617020 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17616980 TTACAAGAAA
17616990 AATAATAAAAAATAAT
1 AATAATAAAAAATAAT
*
17617006 AATAATAATAAATAA
1 AATAATAAAAAATAA
17617021 ATTATAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAATAAAAAATAAT
Found at i:17617115 original size:27 final size:27
Alignment explanation
Indices: 17617085--17617136 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
17617075 ACAGAAAAAA
* *
17617085 AATAAGTAA-AAATATACATATAATAAT
1 AATAAATAACAAA-ATACATAAAATAAT
17617112 AATAAATAACAAAATACATAAAATA
1 AATAAATAACAAAATACATAAAATA
17617137 CAAAAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (27 bp):
AATAAATAACAAAATACATAAAATAAT
Found at i:17618024 original size:26 final size:26
Alignment explanation
Indices: 17617995--17618044 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17617985 GTTGACTTAG
17617995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17618021 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
17618045 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17618927 original size:26 final size:26
Alignment explanation
Indices: 17618891--17618943 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17618881 GTTGACTTAG
17618891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17618917 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17618943 G
1 G
17618944 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17620813 original size:26 final size:26
Alignment explanation
Indices: 17620762--17620814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17620752 CTAGTCCGAT
**
17620762 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17620788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17620814 C
1 C
17620815 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17622563 original size:26 final size:26
Alignment explanation
Indices: 17622534--17622586 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17622524 CTGATCCGAT
17622534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17622560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17622586 C
1 C
17622587 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17624333 original size:27 final size:27
Alignment explanation
Indices: 17624298--17624434 Score: 76
Period size: 27 Copynumber: 5.1 Consensus size: 27
17624288 TTTTCTTTTG
*
17624298 TATTTTATGTATTTTATTATTTATTAT
1 TATTATATGTATTTTATTATTTATTAT
*
17624325 TATTATATGTATATTT-TTACTTATT-T
1 TATTATATGTAT-TTTATTATTTATTAT
* * *
17624351 T-TTTTCTGTTAATATTTA-TATGTATT-T
1 TATTATATG-T-AT-TTTATTATTTATTAT
* *
17624378 TATT-TATTTAGTTCTA-TATTTATTAT
1 TATTATATGTA-TTTTATTATTTATTAT
*
17624404 ATATTATAATTTA-TTTATTA-TTATTAT
1 -TATTAT-ATGTATTTTATTATTTATTAT
17624431 TATT
1 TATT
17624435 TTTTATTATT
Statistics
Matches: 88, Mismatches: 11, Indels: 23
0.72 0.09 0.19
Matches are distributed among these distances:
25 16 0.18
26 10 0.11
27 49 0.56
28 8 0.09
29 5 0.06
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (27 bp):
TATTATATGTATTTTATTATTTATTAT
Found at i:17624417 original size:17 final size:17
Alignment explanation
Indices: 17624376--17624443 Score: 59
Period size: 16 Copynumber: 3.9 Consensus size: 17
17624366 TTATATGTAT
*
17624376 TTTATTTATTTAGTTCTATA
1 TTTATTTA-TTA-TTATA-A
17624396 TTTA-TTATATATTATAA
1 TTTATTTAT-TATTATAA
*
17624413 TTTATTTATTATTATTA
1 TTTATTTATTATTATAA
*
17624430 -TTATTTTTTATTAT
1 TTTATTTATTATTAT
17624444 TTTTCTTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
16 13 0.30
17 12 0.28
18 9 0.21
19 5 0.12
20 4 0.09
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (17 bp):
TTTATTTATTATTATAA
Found at i:17624446 original size:10 final size:10
Alignment explanation
Indices: 17624396--17624447 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
17624386 TAGTTCTATA
*
17624396 TTTATTATAT
1 TTTATTATTT
* *
17624406 ATTATAATTT
1 TTTATTATTT
17624416 ATTTATTA-TT
1 -TTTATTATTT
*
17624426 ATTATTATTT
1 TTTATTATTT
17624436 TTTATTATTT
1 TTTATTATTT
17624446 TT
1 TT
17624448 CTTGTAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 6 0.18
10 22 0.67
11 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTATTATTT
Found at i:17625518 original size:16 final size:16
Alignment explanation
Indices: 17625485--17625523 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
17625475 TTAGATTAGG
*
17625485 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
17625501 TTTATCTTAAT-TTATT
1 TTTAT-TTAATATTATT
17625517 TTTATTT
1 TTTATTT
17625524 TGTTTTACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 14 0.67
17 5 0.24
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:17625557 original size:16 final size:17
Alignment explanation
Indices: 17625511--17625558 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
17625501 TTTATCTTAA
17625511 TTTATTTTTATT-TTGT
1 TTTATTTTTATTATTGT
17625527 TTTACTTTTCT-TTATT-T
1 TTTA-TTTT-TATTATTGT
17625544 TTTATTTTTATTATT
1 TTTATTTTTATTATT
17625559 CTATTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 13 0.46
17 11 0.39
18 3 0.11
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTATTGT
Found at i:17625663 original size:60 final size:60
Alignment explanation
Indices: 17625573--17625751 Score: 297
Period size: 59 Copynumber: 3.0 Consensus size: 60
17625563 TTTCTTTAAA
*
17625573 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
** *
17625634 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
17625694 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
17625752 CTACACAAGA
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
59 50 0.45
60 49 0.44
61 12 0.11
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17629687 original size:17 final size:17
Alignment explanation
Indices: 17629611--17629689 Score: 65
Period size: 17 Copynumber: 4.6 Consensus size: 17
17629601 CAATGGATGA
*
17629611 AAATGAGAAAAGAGAAAA
1 AAATGAGAAAA-AGAAAG
17629629 AAGATGATG-AAAA-AAAG
1 AA-ATGA-GAAAAAGAAAG
* *
17629646 GAATTA-AAAAAGAAAG
1 AAATGAGAAAAAGAAAG
**
17629662 AAAAAAGAAAAAGAAAG
1 AAATGAGAAAAAGAAAG
17629679 AAATGAGAAAA
1 AAATGAGAAAA
17629690 TGGAAAAAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
15 4 0.08
16 10 0.21
17 23 0.48
18 3 0.06
19 7 0.15
20 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (17 bp):
AAATGAGAAAAAGAAAG
Found at i:17630999 original size:41 final size:41
Alignment explanation
Indices: 17630936--17631269 Score: 530
Period size: 41 Copynumber: 8.1 Consensus size: 41
17630926 GATTGTCAAT
* *
17630936 GAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
*
17630978 GAGTAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
17631019 GAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTCAGAG
1 GAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
17631061 GAGCAATTTATTTTTCAAAGTCGTGGTGCCGCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
17631102 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
17631143 GAGCAATTTA--TTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
17631182 GAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
* *
17631223 GAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAG
1 GAGCAATTTAT-TTT-TCAAAGTCGTGGTGCCTCTGTTTAGAG
17631266 GAGC
1 GAGC
17631270 TTTGGTAAAA
Statistics
Matches: 274, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
39 39 0.14
40 4 0.01
41 147 0.54
42 52 0.19
43 30 0.11
44 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (41 bp):
GAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:17631046 original size:83 final size:83
Alignment explanation
Indices: 17630936--17631269 Score: 536
Period size: 83 Copynumber: 4.0 Consensus size: 83
17630926 GATTGTCAAT
*
17630936 GAGCAATTTACTTTC-CAAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTATTTTTCAAAGTC
1 GAGCAATTTA-TTTCTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
17631000 GTGGTGCCTCTGTTTAGAG
65 GTGGTGCCTCTGTTTAGAG
*
17631019 GAGCAATTTACTTTCTC-AAAGTCGTGGTGCCTCTGTTCAGAGGAGCAATTTATTTTTCAAAGTC
1 GAGCAATTTA-TTTCTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
*
17631083 GTGGTGCCGCTGTTTAGAG
65 GTGGTGCCTCTGTTTAGAG
*
17631102 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA--TTTCAAAGTCG
1 GAGCAATTTATTTCTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
17631164 TGGTGCCTCTGTTTAGAG
66 TGGTGCCTCTGTTTAGAG
17631182 GAGCAATTTATTT-TCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGT
1 GAGCAATTTATTTCTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAGT
* *
17631246 CGTTGAGCCTCTGTTTAGAG
64 CGTGGTGCCTCTGTTTAGAG
17631266 GAGC
1 GAGC
17631270 TTTGGTAAAA
Statistics
Matches: 237, Mismatches: 8, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
79 2 0.01
80 76 0.32
82 39 0.16
83 90 0.38
84 30 0.13
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (83 bp):
GAGCAATTTATTTCTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
TGGTGCCTCTGTTTAGAG
Found at i:17631110 original size:124 final size:121
Alignment explanation
Indices: 17630936--17631269 Score: 544
Period size: 124 Copynumber: 2.7 Consensus size: 121
17630926 GATTGTCAAT
* *
17630936 GAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTATTTTTCAAAGTCG
1 GAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
17631001 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTCAGAG
65 TGGTGCCTCTGTTTAGAGGAGCAATTTA--TT-TCAAAGTCGTGGTGCCTCTGTTCAGAG
*
17631061 GAGCAATTTATTTTTC-AAAGTCGTGGTGCCGCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
1 GAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
*
17631125 TGGTGCCTCTGTTTAGAGGAGCAATTTATTTCAAAGTCGTGGTGCCTCTGTTTAGAG
65 TGGTGCCTCTGTTTAGAGGAGCAATTTATTTCAAAGTCGTGGTGCCTCTGTTCAGAG
17631182 GAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTC
1 GAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAGTC
* *
17631247 GTTGAGCCTCTGTTTAGAGGAGC
64 GTGGTGCCTCTGTTTAGAGGAGC
17631270 TTTGGTAAAA
Statistics
Matches: 198, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
120 5 0.03
121 71 0.36
122 5 0.03
123 29 0.15
124 74 0.37
125 14 0.07
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (121 bp):
GAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGT
GGTGCCTCTGTTTAGAGGAGCAATTTATTTCAAAGTCGTGGTGCCTCTGTTCAGAG
Found at i:17631282 original size:1 final size:1
Alignment explanation
Indices: 17631276--17631329 Score: 63
Period size: 1 Copynumber: 54.0 Consensus size: 1
17631266 GAGCTTTGGT
* * * * *
17631276 AAAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAACACAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17631330 TGACAATGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:17631302 original size:21 final size:21
Alignment explanation
Indices: 17631276--17631329 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
17631266 GAGCTTTGGT
17631276 AAAAAAA-AAAAAAAACAAAA
1 AAAAAAACAAAAAAAACAAAA
*
17631296 AAAAAAACAAAAAAAACACAA
1 AAAAAAACAAAAAAAACAAAA
17631317 AAAAAAACAAAAA
1 AAAAAAACAAAAA
17631330 TGACAATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 7 0.22
21 25 0.78
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAAAAACAAAAAAAACAAAA
Found at i:17631325 original size:12 final size:12
Alignment explanation
Indices: 17631276--17631323 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
17631266 GAGCTTTGGT
17631276 AAAA-AAAAAAA
1 AAAACAAAAAAA
17631287 AAAACAAAAAAA
1 AAAACAAAAAAA
17631299 AAAAC-AAAAAA
1 AAAACAAAAAAA
*
17631310 AACACAAAAAAA
1 AAAACAAAAAAA
17631322 AA
1 AA
17631324 CAAAAATGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
11 14 0.41
12 20 0.59
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Found at i:17631563 original size:27 final size:27
Alignment explanation
Indices: 17631528--17631579 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
17631518 TTTTCTTTTG
* *
17631528 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTACTTATTAT
17631555 TATTATATGTATATTTTTACTTATT
1 TATTATATGTATATTTTTACTTATT
17631580 TATTTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (27 bp):
TATTATATGTATATTTTTACTTATTAT
Found at i:17631569 original size:21 final size:20
Alignment explanation
Indices: 17631545--17631674 Score: 73
Period size: 19 Copynumber: 6.7 Consensus size: 20
17631535 TGTATTTTAT
17631545 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATAT-TA
17631566 TATTT-TTACTTATT-TATT-
1 TATTTATTA-TTATTATATTA
* *
17631584 TATTTATTTTCTGTTAATATTTA
1 TATTTATTAT-TATT-ATA-TTA
*
17631607 TATGTATT-TTATT-TA-TA
1 TATTTATTATTATTATATTA
* *
17631624 TAGTT-CTA-TATT-TATTA
1 TATTTATTATTATTATATTA
* *
17631641 TATATATTATAATT-TATTA
1 TATTTATTATTATTATATTA
17631660 TATATTATTATTATT
1 TAT-TTATTATTATT
17631675 TTTTATTATT
Statistics
Matches: 84, Mismatches: 13, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
16 7 0.08
17 10 0.12
18 8 0.10
19 19 0.23
20 15 0.18
21 15 0.18
22 3 0.04
23 7 0.08
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (20 bp):
TATTTATTATTATTATATTA
Found at i:17631643 original size:19 final size:19
Alignment explanation
Indices: 17631614--17631680 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
17631604 TTATATGTAT
*
17631614 TTTATT-TATATAGTTCTATA
1 TTTATTATATATA-TTATA-A
17631634 TTTATTATATATATTATAA
1 TTTATTATATATATTATAA
*
17631653 TTTATTATATATTATTATTA
1 TTTATTATATA-TATTATAA
*
17631673 TTTTTTAT
1 TTTATTAT
17631681 TATTTTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 12 0.29
20 24 0.57
21 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTATTATATATATTATAA
Found at i:17632616 original size:44 final size:44
Alignment explanation
Indices: 17632565--17632649 Score: 145
Period size: 44 Copynumber: 1.9 Consensus size: 44
17632555 GCCAAGCCGA
17632565 CCAAGCCGCC-CCCCGAGCCGTTTCTCTTCCTTGAGCCGAGCTTC
1 CCAAGCCGCCTCCCC-AGCCGTTTCTCTTCCTTGAGCCGAGCTTC
*
17632609 CCAAGCCGCCTCCCCAGCCGTTTCTCTTTCTTGAGCCGAGC
1 CCAAGCCGCCTCCCCAGCCGTTTCTCTTCCTTGAGCCGAGC
17632650 CGAGCTGCGA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 35 0.90
45 4 0.10
ACGTcount: A:0.12, C:0.45, G:0.20, T:0.24
Consensus pattern (44 bp):
CCAAGCCGCCTCCCCAGCCGTTTCTCTTCCTTGAGCCGAGCTTC
Found at i:17632712 original size:15 final size:16
Alignment explanation
Indices: 17632679--17632737 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
17632669 CTCTAGGTTT
*
17632679 TTTTTTTTTTTTTGAA
1 TTTTTTTTATTTTGAA
* *
17632695 TTTTTTTTATTTTCAT
1 TTTTTTTTATTTTGAA
17632711 TTATTTATTTA-TTTG--
1 TT-TTT-TTTATTTTGAA
17632726 TTTTTTTTATTT
1 TTTTTTTTATTT
17632738 ATTAGATTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.11
14 5 0.14
15 2 0.06
16 15 0.42
17 6 0.17
18 4 0.11
ACGTcount: A:0.14, C:0.02, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTTTTTATTTTGAA
Found at i:17632818 original size:17 final size:17
Alignment explanation
Indices: 17632798--17632837 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
17632788 TTTGTTTTAC
*
17632798 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
17632815 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
17632829 TTTTCTTTA
1 TTTTCTTTA
17632838 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:17632822 original size:14 final size:14
Alignment explanation
Indices: 17632784--17632832 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
17632774 ATTTTAATTT
* *
17632784 TATTTTTGTTTTAC
1 TATTTTTATTTTTC
*
17632798 TTTTCTTTATTTTTC
1 TATT-TTTATTTTTC
*
17632813 TATTTTTATTATTC
1 TATTTTTATTTTTC
17632827 TATTTT
1 TATTTT
17632833 CTTTAAATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (14 bp):
TATTTTTATTTTTC
Found at i:17633008 original size:59 final size:60
Alignment explanation
Indices: 17632840--17633019 Score: 256
Period size: 61 Copynumber: 3.0 Consensus size: 60
17632830 TTTCTTTAAA
*
17632840 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
17632901 TGGAAATCAAAGTTT-CAAAAAAATATATTTTTGAGGAAAAGTTTAAAGTATCAATTTTTCT
1 TAAAAATCAAA-TTTCCAAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
17632962 TAAAAAT-AAATTTCCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
17633020 CTACACAAGA
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
59 35 0.34
60 22 0.21
61 47 0.45
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17633653 original size:26 final size:26
Alignment explanation
Indices: 17633613--17633665 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17633603 CTGATCTGAT
* *
17633613 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17633639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17633665 C
1 C
17633666 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17633863 original size:12 final size:12
Alignment explanation
Indices: 17633846--17633877 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
17633836 AACAAAATGA
17633846 GCGGGCGGGTGC
1 GCGGGCGGGTGC
17633858 GCGGGCGGGTGC
1 GCGGGCGGGTGC
17633870 GCGGGCGG
1 GCGGGCGG
17633878 CCAGAGAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.25, G:0.69, T:0.06
Consensus pattern (12 bp):
GCGGGCGGGTGC
Found at i:17634552 original size:26 final size:26
Alignment explanation
Indices: 17634516--17634567 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17634506 CCAGTCCGAT
17634516 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
*
17634542 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
17634568 ACTAAGTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:17636366 original size:26 final size:26
Alignment explanation
Indices: 17636316--17636368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17636306 ATCATCCGAT
*
17636316 CTTAGACTGGGAATAAAGTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
17636342 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17636368 C
1 C
17636369 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17637237 original size:26 final size:26
Alignment explanation
Indices: 17637208--17637258 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17637198 TAGTCTGACC
*
17637208 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
17637234 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17637259 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:17637557 original size:889 final size:892
Alignment explanation
Indices: 17633529--17655902 Score: 15739
Period size: 903 Copynumber: 25.2 Consensus size: 892
17633519 ATGCTCCGAT
* * * * * *
17633529 GATGGTGCCCCGACGAAGAAAAATACGACACCAACACATGCCCGATCCCAGTATGTGCTACCGCA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
17633594 ACCCTCGATCT-GATCTGATCTTAGATTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACT
66 ACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
*
17633658 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * * *
17633723 CACAAGCTGGGGATCGGTCGAGCCCCCCTTTGCGTGCTGCCGATCATGCTGCCGTAACCCTTGGT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* ** * * * * *
17633788 TTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCAAAGCCAATCAACAAAATGAGCGGGCG
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * ** * * * *
17633853 GGTGCGCGGGCGGGTGC-GCGGGCGGCCAGAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGT
325 GGCGAGCGGGCGGGCACTAC-GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
17633917 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAAT
389 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
17633982 TCATACAATTGTCCCTTAAGCCTTCACGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * * *
17634047 CACGATTTTCAAAACTTTTTGCCATTCAGAATTTTTTAGAATTTTTTCGAAAAGAGTTTTGGCCC
519 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* *
17634112 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAGCTAAAAACTC
584 CAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17634177 GAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTAC
649 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* ** *
17634242 CGGCAGCAAATTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
17634307 GGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGTGGGCACACCCCCC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * *
17634372 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTTTGAC
843 GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC----A------GAC
* ** * * * * ** **
17634432 GACGGTG-CCTCGGTGAAGAAAAATGCAGCACCAGTACATGCCCGGGCATAGCATGTGCTGCCAT
1 GATGGTGCCCT-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
17634496 AACACTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACT
65 AACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * * * *
17634561 CTGTATGACTAAGTCGACCCATTAAATGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCGAGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * * ** *
17634626 CGTAAGCCAGGCATC-AGTCGGGTCCCCCTCTGCGTGCTATCAATCCTACTACTGTAATGCTCAG
195 CGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGG
* *
17634690 TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCCT-AGCCAACCGACGAAAC-A---AG
259 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGACGAAACGAGCGGG
*
17634750 C--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
323 CGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* ** * * * *
17634811 TGGTAGGTGGGTTAAAACATATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
*
17634876 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGAC-CTGTTTTCTATTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTT
* * * * *
17634940 TTCACGATTTTCAAAACTGTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
517 TTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * * *
17635005 CCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAACC
582 CCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
17635070 TCGAAGTGTACAATATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCT
647 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
17635135 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
712 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
17635200 AGGGATAGGGGGCCAACATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACAGC
777 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--C
* * * * * *
17635265 CCC--CCCGTCCCCTAATCGCTGGAACCACAATGCCACCGATCAGGTTTTCCGATGATGCTC
840 CCCGACCC--CCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-GA----C
* ** * **
17635325 TGGCAATGGT-TCCTCGACGAAGAAAAATGTGGCACCGGCACATGATCGAGCCCAGCATAG-GCT
1 --G--ATGGTGCCCT-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT-GTGCT
* * * *
17635388 GCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
60 GCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
17635453 GAACTTCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTG
125 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * *
17635518 GGATACG-AAGCCGGGGATC-AGTTGGGTCCCCCTCTGTGTG-TGCCGATCCTGCTACTGCAACC
190 GGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
* * ** * * *
17635580 ATCGGTTTGGTCCAATCTTAGACTGGAAAAGAAC-CCGTATGCCTAAGCCAACCGACAAAACGAG
254 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * *
17635644 TGGGCGGGTGGGCGGGTGGGCACTAC-ACTGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGA
319 CGGGCGGGCGAGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
17635708 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGGCATGCCAATGCCATTTTTAAGGCT
383 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCT
* * *
17635772 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTTGATTTC
447 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** * * * *
17635837 TACTTTTCATGATTTTCGAAACTTTTTGGGGTTCGGGACTTTTTAAAATTTTTTTGGAAGAAGTT
512 TATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* * * * * * *
17635902 CTAG-TCCTAACTTGGTAAGACGTAGATCATTTGTATTTTTGTTGCGC-TGCACAGAAAAAATTC
577 TTGGCCCCAAACTTGGT-AGAAGT-GATC-CTTGTATTTTTTTTG-GCATGCACA-AAAAAATTC
* *
17635965 AGGCTAAAAACCTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGAC
637 A-GCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*** *
17636030 ACTTTAATTATTACTGGCAGCAAACCTGTTAAATCTCAAATGCT-TTT-AGGGGGTGTGGAGTTC
700 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-GAGTTC
* * * *
17636093 TCAAGGTTTGATGAGGAATA-GGGGCCAATAT-AGGGGCAAGTA-CAGCACCCATCGAACATCAT
764 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-
* * * * * * * *
17636155 TGTG-TCACCACCCCCGGCCCCCATCGATCATCACCGAACCTCACA--CCGTCGGTCAGGTTTTT
828 TGTGCGCA-CACCCCCGACCCCC-CCGATC-GC-CGGAACCCCA-ATGCCGCCGGTCAGG-TTCT
*
17636217 CGACATGCTCGC
887 C--CA-G---AC
* * * *
17636229 GCATGATGTGCCCTGATGCAAG-AAAAT-GGGCACCAGCACATGCCCGAGCAGCAAACATGTGCA
1 G-ATG--GTGCCCTGACG-AAGAAAAATACGGCACCAGCACATGCCCGAGC--CCAGCATGTGC-
** * * * * *
17636292 AACTCGTAA-CCT-GAATC-A-TCCGATCTTAGACTGGGAATAAAGTCCGTATGCTTAGACTGGG
59 TGC-CGCAACCCTCG-GTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * ** * *
17636353 AATCAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGCACTCAACCGGCCAGAGGG
122 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
17636418 GCGGGATACGCAAGCCGGGGATTGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGTAA
187 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAA
** * *
17636483 CCCTCATTCTGGTCTGATCTTTGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAAC
252 CCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
17636547 GAGCAGGCGGGCGGGCGGGCAGGCATTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATC
316 GAGCGGGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
17636612 GATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
381 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
17636677 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
446 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
17636742 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATATTTTCGAAAGGAGT
511 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGT
17636807 TTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
576 TTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
17636872 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
641 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
17636937 ATTGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGT
706 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
17637002 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCA
771 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
17637067 CATCCCCC-ACCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAG-C
836 CA-CCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
* * * * * *
17637123 GATGGTGCCCTGGCGAAGAAAAATATGGCACCAGCTCATGCCTGAGCCCAGCATGTACTGTCGCA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * *
17637188 ACCTTCGGTCTAGTCTGACCTTAGACTGGGAATGAACTCTGTATGGTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* *
17637253 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATAC
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * ** *
17637318 ACAAGCTGGGGATTGACCGGGTACCCCTCTATGTGATGTCGATCCTGCT-CCGCAACCCTCGGTC
196 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
* * *
17637382 TAGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGTGG
261 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* *
17637446 ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGG
326 GCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
17637511 TAGGTGGGTTTAGGCAGATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
391 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
17637576 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
456 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*
17637641 TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATATTTTCGAAAGGAGTTTTGGCCCCA
521 TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
17637706 AACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
586 AACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
17637771 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
651 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
17637836 GCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGG
716 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
17637901 ATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTAG
781 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGAC
* * * * *
17637966 CCCCCCGATCGTCGGAACCCTAATGTCGTCGGTCAAGTTCTCCAGCGATGCTCGAC
846 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-----GAC
* ** * * * * **
17638022 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGGGTCTAGCATGTGCTGTCATA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
17638087 A-CC-C--T-TA----G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
17638126 CGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGCTGCGCCAGCCAGCCAGAGGGGCGAG
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT----CAGCCGGCCAGAGGGGCGGG
*
17638191 ATGCGCAAGCCGGGGATCGA-CAGGGTCCCCCTCTGCGTGCTG-CTGATCCTGCTGCCACAACCC
192 ATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCC
* * * * ** *
17638254 TCGTTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGATAAACCGACGAAATGAG
255 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAG
* * * * *
17638319 C-AG-GTG-G-GCGGGCGGCCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCCTGGATCGAT
319 CGGGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* **
17638380 AGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
384 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
* * *
17638445 TAAATTCATACTATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
449 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
17638510 TTTTTTAGGATTTTCAAAAATTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCGTTT
514 TTTTTCATGATTTTCAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * *
17638574 TGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAA
578 TGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
17638639 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAAT
643 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * *
17638704 GGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCATTAATGGGGTGTGAGTTCTCAAGGTTT
708 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
17638769 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACA
773 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
17638834 CCCCC-ACCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAG-C
838 CCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
* * * * * *
17638887 GATGGTGCCCTGGCGAAGAAAAATATGGCACCAGCTCATGCCTGAGCCCAGCATGTACTGTCGCA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
17638952 ACCTTCGGTCTAGTCTGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** * *
17639017 CGTATGCCTAAGTCAACGCATGAAACGAGCGTGCGGGCGCTCAGCAAGCTAGAGGGGCGGGATAC
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * * ** * *
17639082 ACAAGCTAGGGATTGACCGGGTACCCCTCTATGTGATGTCGATCCTGCT-CCACAACCCTCGGTC
196 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
* * *
17639146 TAGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGTGG
261 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* *
17639210 GCGAGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGG
326 GCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
17639275 TAGGTGGGTTTAGGCAGATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
391 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
17639340 ATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCA
456 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * ** *
17639405 TGATTTTCGAAACTTTTTATGGTTTGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTAGCCCCA
521 TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * *
17639470 AACTTGGTGGAAATCATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
586 AACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
17639535 ACTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTG
651 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
17639600 GCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGG
716 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
17639665 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACAACCCCGTC
781 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC--C
* * *
17639730 GACCCCCCCGATCGCTGCAACCCCAATGCCGCCGGTCAGGTTCTCC-GGC
843 GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
* * * * *
17639779 GATGCTCTGGCGAAGGTGTCTCGGCGAAGAAAAATACGACACTAGCACATGCCCGAGCCCAGCAT
1 GATG--GT-GC-------CCT-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
17639844 GTGCTGCTGAAACCCTCGATCTA-TTTCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACT
55 GTGCTGCCGCAACCCTCGGTCTAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
17639908 GGGAATGAACTCCGTGTGCCTAAGTCAACCCACGACACGAGCGGGCGGGCGCTCAGCCAGCCAGA
119 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * ** * * * *
17639973 GGGGCAGGAAGTGTGAGTCGAGGATCG-GCTGAGTCCCCCTCTGCGTGC--T--A-CC-G-T---
184 GGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* *
17640027 --AACCCTTGG-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
248 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * * * * ** *
17640089 AATAAGCGGGCAGGCGGGCAGGCGGGCACTATGTTTGCCAGAGAGACGGGATGCGTAAGCCGTGG
313 AACGAGCGGGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
17640154 ATCGATAGGGTGGTTGGTGGGTTTAGGCAGATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
378 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
** * *
17640219 GAATTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
443 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
17640284 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGACTTTTTAAAATTTTTTCGAAAGG
508 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * ** * *
17640349 TGTTATGGCCCCAAACTTGGTA-AACACGATCCTTGTATTTTTTTTGGCATGTACAAAAACATTC
573 AGTTTTGGCCCCAAACTTGGTAGAA-GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
*
17640413 AGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
637 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
17640478 TTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTAG
702 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
17640543 AGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
767 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *** * ** *
17640608 CGCACACCCCCTAGCCCCCCGA-C-AAAGAA---AAATGTGGCAC---CA-G--C-ACATG-C
832 CGCACACCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCA-GAC
* * * *** * ** * * * *
17640658 -CTGG-GCCCAG-C-ATG--TGCTGCCGTAACC--CTCA-GTCCG-GTCC-G-ATCTTAGACTG-
1 GATGGTGCCCTGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCAT-GT-G-CTGC
* ** * ** *
17640710 -G-AA--AT-GAACT--CCACATGCTTAGACTGGGAATGAACTCCATATG----G----------
62 CGCAACCCTCGGTCTAGTCTGAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
17640754 ------------CTAAGTCAACGCATGAAACGAGCGTGCGGGAGCTCAGCCAGCTAGAGGGGCGG
126 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
17640807 GATGTGCAAGCCGAGGATCGGTCGGGTCTCCCACTGCGTGCTGTCAATCCTGCTGCTGCAACCCT
191 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * * ** *
17640872 CAGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAATAAGCA
256 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
17640937 GGCGGAC-AGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATA
321 GGCGGGCGA-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
** * *
17641001 GGGTGGTAGGTGGGTTTAGGCACATCACCATATTTCTGCGTGCCAATGCCATTTTCATGGCTTGT
385 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* ** *
17641066 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGATAAGATGACTCGTTTTCTAT
450 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
17641131 TTTTCACT-ATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
515 TTTTCA-TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* * * * *
17641195 CGTCCCAAACTTGGTAGACA-CGATCCATGTATTTTTGTTGGCATGCACAAAAAGAATTCAGCTA
579 GGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATTCAGCTA
* * * *
17641259 AAAACTTGAAGCGTACAAGATTTTGTCAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
642 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
17641324 TGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTT
707 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
17641389 TGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
772 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * ** * *
17641454 ACCCCCTAGCCCCCTCGATCGCTGAAACCCTAATGTGGTCGGTCAGGTTCTCTGGTGATGCTCCG
837 ACCCCCGA-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG-T-TC------T-C-CAG
17641519 AC
891 AC
* * * ** * * *
17641521 GATTGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGGGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * *
17641586 ACCCTCAGT-TCGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACT
66 ACCCTCGGTCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
17641650 CTGTATGCCTAAGTCAACCCATGAAAGGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * *
17641715 CGCAAGCCGGGGATCGATCGGGTCCCTCTCTTTGTGCTAG-CGATCCTGCTGCTGCAA-CCTCAG
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-GTCGATCCTGCTGCCGCAACCCTCGG
* ** * * ** *
17641778 TCTAGTCTGATCTTAGACTACGAATGAACTCCATATGCCTAAGCCAACTGACGAAATAAGCAGGC
259 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
17641843 GGGCGGGCGAGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGGG
324 GGGCGAGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* ** * *
17641907 TGATATATGGGTTTAGGCACATCTCCATATTTCTACGTGCCAATGCCATTTTCATGGCTTGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
17641972 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * ** *
17642037 TCATGATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTC-AGAAGGTGTTTTGGC
518 TCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGC
* * * *
17642101 CCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTTGGCATGAACAAAAAAATTTAGCTAAAAA
582 CCCAAACTTGGTAGAAGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
17642166 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAAGGC
646 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17642231 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGACTTCTTGAGGTTTGAT
711 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
17642296 GAGGGATAGGGGGCCAATATAAGAGCCAAGTACTAGCACCCATCGCACATCATCTGCGCACATCC
776 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* ** ** * * *
17642361 CCTCGGCCCCCCCGATCGCCAAAACCTTAATGTCGCCTGTCAAGTTCTCTGACGATGCTCCGAC
840 CC-CGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC---C-A------GAC
* * *
17642425 GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
17642490 ACCCTCGGTC----C-GATC-----C-------G-A-----TAT--TTAGACTGGG-ATGAACTT
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
17642529 CGTATCCCTAAGTCAACCCACG-AACG-GTGTGCGGGCGGCTCCAGTCGACCAGAGGAGCGGGAA
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC-GCT-CAGCCGGCCAGAGGGGCGGG-A
* * * * * **
17642592 TGCGCTAAGCTC-GGGATCGGTCGGGGTCCTCCC-CTCACATGCT-ACGATCCCTACTGCTACAA
193 TGCGC-AAGC-CGGGGATCGATC-GGGTCC-CCCTCT-GCGTGCTGTCGAT-CCTGCTGCCGCAA
* * *
17642654 -CCT-GTGATCCCGGTCCGCGATCGTTAGACTGGGAATGAACTCTGTATGCCT-AGCCAACCGAC
252 CCCTCG-G-T-CTGGT-C-TGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
17642716 GAAACGA---GGC-GGCCAGGCGGGCAGGGCACTGACG-CAGGCCAGAGAGACGGGACGCGCAAG
311 GAAACGAGCGGGCGGGCGA-GCGGGC-GGGCACT-ACGTC-GGCCAGAGAGACGGGATGCGCAAG
*
17642776 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
372 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * **
17642841 TTTTTTGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGATAAGACG
437 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** *
17642906 ACTCATTTTCTATTTTTCATGATTTTCAAAAATTTTCGCGGTTCAGGATTTTTTAAAATTTTTTC
502 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
17642971 GGAAGGTGTTTTTG-CCCAAACTTGGTAGACA-TGATCCTTGTATTTTTTTTGGCATGCACAAAA
567 GAAAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * * *
17643034 AAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACAATTTGAAAAAGGTGTCCTCATTCC
631 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17643099 AGACACTTTAATGGCCACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAG
696 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17643164 TTTTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
761 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
17643229 CATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-
826 CATGTGCGCACA-CCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCA
17643293 GAC
890 GAC
* * *
17643296 GATGGCGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * **
17643361 ACCCTCGGTC-CGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTA-A----G--CCAA--
66 ACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * ** ** * * * * * * * *
17643416 CCG-A-G--GAA-ACGA-GCGGGTAGGCGGGCGGGCAGGCCCT-ACGTCGACCAGAGAGACGGGA
130 CCGTATGCCTAAGTCAACCCATG-AAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGA
* * ***** * * * *
17643474 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACAT-CT-TCATATTACTGCATG
193 TGCGCAAGCCGGGGATCGAT--CG-GGT--CCCCCTCT--G--CGTGCTGTC-GA-TCCTGC-TG
* *** * ** * *
17643537 -C-CAATGCCATTTTTATGG-CTTGTAAATTCATAC----AATG--GTCC-T-T---TAAGCCTT
246 CCGCAA--CCCTCGGTCTGGTC-TG-ATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCC--
* * *** * ** * * **** **** ********
17643588 AACGTGATGTTTC-A--TGGCAAG-AAGAC--TCGTTTTCTA--TTTTTCATGATTTTTAAAACT
304 AAC-CGACGAAACGAGCGGGCGGGCGAG-CGGGCGGGCACTACGTCGGCCA-GAGAGACGGGA-T
**** * *** ** * *** ** * * * * *
17643645 TTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGC-C--C--CAAACTTGGTA
365 GCGCAAGCCGT-GGA---TCGATAGGGTGGTAGG-TGG-GTTTAGGCACATCTTCATA-TT--TC
* * * * ** * * *
17643705 GACGTGATCC-TTG-TATTTTTGTTGGCAGGCAAAAAAAAATTCAGCTAAAAACACGAAGTGT-A
421 TACGTG--CCAATGCCATTTTT-ATGGCTTG------TAAATTCA--T----ACA--ATG-GTCC
** ** * * * * *
17643767 C--AAGATTTTGTGACAATTTGAAAAAGATATCCCAT-TCAAGAC-ACT--TTAATGGCCACTGG
468 CTTAAG--CCT-T--C-ACGTG---AAG-T-T-TCATGGCAAGACGACTCGTT--T-TCTA-T-T
*** * * * * * * * * ** ** **
17643826 CAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGAT-G--A
516 TTTC--A--TG---ATTTTCAAA-ACT-TTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* ** *** * *** * * ** ** * ** * *** *
17643887 GG-GATAGGGGGGCAATA-TAAGGGCCAAGT-ACCCGTTGCACATCATGTGTGCACACCCCCCAC
571 GGAGTTTTGGCCCCAA-ACT-TGGTAGAAGTGATCC-TTGTATTTTTTTTG-GCATGCACAAAAA
**** *** * * * ** * *** **
17643949 CCCCCGATCGC-CGGAACTCCAATGCCGTCGGT-C-AGCTTATCCGACGATGCTTCGGCGATGGT
632 AATTC-A--GCTAAAAACTCGAA----GT--GTACAAGATTTTGTGACCAT--TT-GAAAAAAGT
*** *** ** ** *** ** ** *
17644011 G-CCCCGA-CGAAGA-AAAAT-ATGGC-ACCAGCA-CATGCCTG-AGGCTAGCATGTGC-CGTCG
685 GTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-T-T
* *** * ** * * ** * **
17644068 CAACCCTCGGTCTGA--TC-CGATCTTAGACT--GGGA-A-TGAACTCAGTAT----GCTTAG-A
747 TAA--GGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGGGC-CAATATAAGGGCCAAGTA
** * *** * * * ** * ** *** * * * *
17644121 CTGGGAATGAACTC-CGT-ATGCTTAAGTCA-ACCCACGAAACGAGCG-T-GCGGGCA-CTCAGT
808 CCAGCACCCATCGCACATCATG--TGCG-CACACCCCCGACCCCCCCGATCGCCGGAACCCCA-A
** **
17644180 TG--GCC--AAAGG---GGC-GA-
869 TGCCGCCGGTCAGGTTCTCCAGAC
* ** * ** *** ** * * * * * *
17644195 GAT-GCG-CAAGTCGGTGATCGAT-CGGGTCC-CCTTC-TG--CGTGCTGTC-G-ATCCTACTGC
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGC-ACATGCCCGAGC--CCAGCAT-GTGCTGC
* * ** * **
17644251 CACAACCCTCGGTC-CGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--CC
62 CGCAACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * ** * * * * * ****
17644308 AA--CCG-A---CGAA-ACAA-GC--G-GGCGGGCGGGCGGGCACT-ACGCCAGCTAGAGAAATG
126 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCG
* * * * ****** * * * * * ** ***
17644361 GGACGCACAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT-TCATATTT
190 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-GTCGATCCTGCTGCCGCAACC
* * * * ** ** * * **
17644420 CTACATGCCAAT-GTC--ATTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCGTTAAGCC-TTC
254 CT-C-GGTC--TGGTCTGA-TCTTA-GAC-TGGGAATGAACTCCGTAT-G-CC--TAAGCCAACC
** *** * * * * * * * **** * ***
17644479 -ACGTGA--AG-TTTCATGGCTAGAC-GAC--TCATTTTCTATTTTTCACGATTTTTGAAACATT
308 GACGAAACGAGCGGGC-GGGCGAG-CGGGCGGGCA-CTAC-GTCGGCCA-GA-----GAGACGGG
* * ** * *** ** * ** * * * **
17644537 TTGCG---GTTCG-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGTC-C--C--CAAACTTGG
363 ATGCGCAAG-CCGTGGA---TCGATAGGGTGGTAG-GTGG-GTTTAGGCACATCTTCATA-TTTC
* * * * * * * * * **
17644593 TAGTCGTGATTC-TTG-TATTTTTTTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TC
421 TA--CGTG--CCAATGCCA-TTTTTATGGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC
* * * * * ***** * * **
17644649 GAAGTGTACAAGATTT--T-G--TGACCATTTG-AAAAAATTGTCCCCGA--TTCAAACACTTTA
479 -ACGTG---AAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA-ACTTT-
* *** * * * * *
17644706 TT--GGCTACCGGCAGCAAACCTGTAAAA---TCTC-AAATG-CTCTTT-------AA---GG-G
537 TTACGG-T-TCGG--G--ATTTTTTAAAATTTTTTCGAAAGGAGT-TTTGGCCCCAAACTTGGTA
** * * ** *** * ** * * * * *
17644753 GGTGTGAGTTCTCG-A---GGTTT-G-ATG-A-GGGATAGGT-GGC-CAATA-T-AAAG-G-CCA
595 GAAGTGA-TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * ** * * ** * ***** **
17644804 AG---TAGTAGCACCCA-TCGCACATCA-TGTGCGCA---CACCCGC-CCCCCGGCCCCT--C--
659 AGATTTTGT-G-A-CCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * ** * * *** * * * ** * * ** *
17644856 C-GATC-GCCCAAA-CCCCAATGC-C-ACCAGTCAGGTTCTCCG--GT-GATGCTCCGATGATGG
720 CAAACCTG-TAAAATCTCAAATGCTCTTTAAG--GGGGTGTGAGTTCTCGA-GGTTTGATGAGGG
* **** * * * * * * * * *
17644913 TTCCCCGACGAAGAAAAATGCGGCACCAG--CGCATGC-CCGAAC-C-CAGCATGTGCTACCGTA
781 ATAGGGGGCCAA-TATAA-G-GGC-CAAGTAC-CA-GCACCCATCGCACATCATGTG----CGCA
* * * * *** * ** * *
17644973 AACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC--T-AGGAATTAA
836 CACCCCCGACCCCCCCGATC---G-C--CG---GAAC-CCCAATGC--CGCCGGTCAGG--TT--
*
17645035 CTCC-GTAT
885 CTCCAG-AC
* * * *** * * * * **
17645043 GCCTAAGT-CAACC-CACGAA-ATGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGCGGGATGCAC
1 G-AT-GGTGC--CCTGACGAAGA--AAAATAC--G-GC---ACCAG-CACA--TGCCCGA-GC-C
* * * * * * ** * *
17645105 AAGTC-GGGGATCGGTCGGGTC-CCCCTCTGCGTGCT-G-CCAATCCT-GCTACT-GCAACCCT-
49 CAG-CATGTG--CTG-C-CG-CAACCCTC-G-GT-CTAGTCTGATCTTAG--ACTGGGAA---TG
* * * * * * * * *
17645163 CAGTCTGATCTGATCTTAGACTAGTAATGAACTTCGTATGCCTAAG-CTAACCAACGAAACGAGC
100 AACTCCG-TATG--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGC
* * * * * *
17645227 ATGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
161 GTGCGGGC--GC--TCA-G-----C--CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
****** * * * * * ** *** * * *
17645292 GGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT-TCATATTTCTACATGCCAAT-GTC--ATTTTT
214 GGGTCCCCCTCTGCGTGCT-GTCGATCCTGCTGCCGCAACCCT-C-GGTC--TGGTCTGA-TCTT
* ** ** * * * ** *** * *
17645348 ATGGCTTGTAAATTCA-TAC-AATGGTCCGTTAAGCC-TCC-ACGTGA--AG-TTTCATGGCTA-
273 A-GAC-TGGGAATGAACTCCGTAT-G-CC--TAAGCCAACCGACGAAACGAGCGGGC-GGGCGAG
* * *** * ***** *** ** * ** ** * **
17645405 --GAC--G-ACT-CATTTTCTATTTTTCACGATTTTTG-AAACATTTTA-CGGT-TCG-GG-A--
331 CGGGCGGGCACTACGTCGGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
** ** ** * * *** ** * * ** * *
17645457 T-TTTTTA-AAATTTTTTCAAAAGAACTTTTGTCCCCAA--AC-TTGGTA--G-TCGT-GATTC-
395 TGGGTTTAGGCACATCTTC-ATATTTC-TACGT-GCCAATGCCATTTTTATGGCTTGTAAATTCA
*** *** ** * * *** * * * * *
17645512 TTGTAT--TTTTTTTGGCATGCACAAAAAATTTCA--GCTAA-A-AACTCGAAGTGTACAAGATT
457 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTC---GTTTTC--TATT
* ** ** * *** ** * *** ** ** ** ***
17645571 TTGTGACCATTTGAAAAAATTGTCCCCAATTC-AGACACTTTAATGGCTACTGGCAGCAAACCTG
516 TT-TCATGATTTTCAAAACTT-TTTACGGTTCGGGATTTTTTAA--AATTTTTTC-G-AAAGGAG
***** * * * * * * * * *** ** * *** * **
17645635 -TAAAATCTCAAATGCTCT-TTA-AGGGGGT--GTG-ACTTCTCGAGGTTTG-ATGAGGGATAGG
575 TTTTGGCCCCAAA--CT-TGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAAATT
** * * ** * *** * ** * * *** *
17645693 GGGC-CAATA-T--AAG-GGCCAAG---TAGTAGCACCCATCACACATCA-TGTACGCACACCCG
636 CAGCTAAAAACTCGAAGTGTACAAGATTTTGT-G-A-CCATTTGAAAAAAGTGTCCCCATTTCAG
* **** * ** * * * * ** * ***
17645749 -CCCCCCGA--CCCCCT--C-G---ATC-GTCGAAA-CCCCAATGCCGTCGGTCAGGTTCTCCGA
698 ACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATG-C-TCTTTAAGGGGGT--G-
* * * *** * ** * * * ** * * *
17645803 TGA-TGCTCGACG-ATGATGCCCCG--ACGAAG-AAAAATGCAGCACC-AGCA-CATGC-CCGAG
757 TGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCA-GCACCCAT
* * * * * *** * **
17645860 CCCAGCAT-TTGTTGCCGTA-AACCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
819 CGCA-CATCATG-TG-CGCACACCCCCGA-CCCCCCCGATC---G-C--CG---GAAC-CCCAAT
*** *
17645923 GCC-TAAGTCA---AC-CCACGA-
870 GCCGCCGGTCAGGTTCTCCA-GAC
* ** * * ** *** * *** ** * ** * *
17645941 AAT-AAG-CGTGAGGGCGCTCAGT-CGG--CCAG-AGGGGCGGGATGCACAAGCCGGGGATCGAC
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGA-GC-CCAGCATGTGCT-G-C
*** * ** ** ** ** *
17646000 CGGGTCCCTC--TCT-G-CGTGCTACCAATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTA
62 CGCAACCCTCGGTCTAGTC-TGAT-CTTAGACTGGGAATG-AA--CTC---C--GTATG--CTTA
* ** * * *
17646061 GACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATGAGCGCGC-GGCGCTCAACCGGC
115 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * * * **
17646125 CAGAGGGGCGGGATGCACAAGTCGAGGATCGGTTGGATCCCCCTCTGTGAGTTGCCGATCCTATT
180 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * * * *
17646190 GCCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATTAACTCTGTGTGCCTAAGCCAACTGA
245 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * * *
17646255 CGAAACTAGCAGACGGGCGGGTGGGTGGGCAGGCACTATGCCAGCTAGAGAGACGGGATGCCCAA
310 CGAAAC--G-AG-CGGGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * * * *
17646320 GTCGTAGATTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCA
371 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
17646385 TCTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
436 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
17646450 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCAGTTCGGGGTTTTTTAAAATTTTTT
501 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
17646515 CGGAAGGATTTTTGTCCCAAAACTTGGTAGACA-TGATCCTTGTATTTTTATTGGCATGCACAAA
566 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAA
17646579 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
630 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17646644 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
695 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
17646709 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
760 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
17646774 TCATGTGCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCTCAATGCCGCCAGTCCGGTTCTCC
825 TCATGTGCGCACACCCCC-GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
17646839 -GGC
889 AGAC
* * * * * * *
17646842 GATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGTCAATCATGTGCTGCTGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * ** * * * *
17646907 AACCTCTGTCCGGTGTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTT
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * *
17646972 CGTATGCCTAAGTCAACCCACGAAATGATCATGCAGGCGCTCAGCCGCCCAGAGGGGCAGGATGC
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * *
17647037 GCAAGCCAAGGATCGACCGGGTCCCCGTCTGCGTG-TCGTCGATCCTGCTACCAG-AACCCTCGG
196 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-GTCGATCCTGCTGCC-GCAACCCTCGG
* * *
17647100 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAACCAACGGACGAAACGAGCGGGC
259 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * *
17647165 GGACGGGCGGGCGGGCATTACGTTGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGT
324 GGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
17647230 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTTCCAATGCCATTTTTATGGCTTGTAAAT
389 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
17647295 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
17647360 CATGATTTTCGAAACTTTCTACGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCC
519 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCC
* * * * *
17647424 CCAAACCTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAATT
583 CCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17647489 CGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
648 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
17647554 CTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTGAA-GGGGTGTGAGTTCTCAACGTTTGATG
713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
17647618 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACACCGCACATCAAGTGCGCACACCCC
777 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * *
17647683 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
841 CCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-G--AC
* * ** * ** * *
17647742 GGTGATGTTGCCCCGGTGAAGAAAAATACGGCACAAGCACATGCCTAAGCCCAACATGTGCTGCT
1 ---GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
** * * * * *
17647807 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAAGAATTTCGTACGCTTAGACTGGGAATGAA
63 GCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
17647872 CTCCGTATGCCTAAGTCAACCCACT-AAATGAGCGAGCGGGCGTTCAACCGGCCAGAGGGGTGGG
128 CTCCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
** * * * * * * **
17647936 ATGCGCAAGTAGGGGATCGATCGAGTCCCCCTTTACGTGTTGCCGATCCTGCTGCCACAATTCTC
192 ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
** * * * * * * *
17648001 AATCTGTTCCGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCAACCGACCAAATGAACGG
257 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * *
17648066 GCGGGCGGGCGGGTGGGCACTACGTCAGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGG
322 GCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
17648131 GTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCGTGCCAGTTCCATTTTTATGGCTTGTAA
387 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
*
17648196 ATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
452 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** * *
17648261 TTCATGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTGAAAATTTTTTCGAATA-GAGTTTTGG
517 TTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA-AGGAGTTTTGG
* * * *
17648324 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACACAAAAATTCAGCTAAAAA
581 CCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
17648389 CTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGC
646 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17648454 TACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGAT
711 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
17648519 GAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTACGAACACCC
776 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACAC
** * * * * * *
17648584 CCCCGGTCCCCCCGATCGCCGAAAACCTAATG-TGTCGGTCAGGTTCTCC-GGC
839 CCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
* * *
17648636 GATGGTGCCCCAGA-GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC
1 GATGGTG-CCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
17648700 AACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
65 AACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
17648765 CCGTATGCCTATGTCAACCCAGGTAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * **
17648830 CACAAGTCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCAAT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * * *
17648895 CTGGTCCGATCTAATACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACG-AA--A-------
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
17648950 --CGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
325 GGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
17649013 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17649078 CATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * * * *
17649143 ACGATTTTTGAAACTTTTTGCAGTCCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
520 ATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * *
17649208 AAACTTGGTAGACA-TGGTCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
585 AAACTTGGTAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
17649272 GAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGGCTAC
649 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17649337 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
17649402 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* ** * * *
17649467 GGCCCCCCCGATCGTTGAAACCCCAATGCTGTCGGTCAGGTTCTTTGACAATGCTCAGAC
843 GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG----TT--C--T-C-CAGAC
* **
17649527 GATGGTGTCCC-GGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
1 GATGGTG-CCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* ** ** * * * *
17649591 AACCCTCAGTCCGGTCCAATCTTAGACTGGCAGTGAACTCCATATGCTTAGACTAGGAATGAACT
65 AACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * * * ** * ** **
17649656 CTGTATGCCTAAGTTAAGCCACGAAACAAGCGTGCAGGTGCTCAGCCAACCAGAAGGGCAAGACA
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * *
17649721 CGCAAGCCGGGGATAGGTC-GGTCCCCCTCTGCGTGTTGCCGATCCTGCTACCGTATCCTTCAGT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* ** ** * *
17649785 CTGATCCAATCTTAGACTGGGAATGAACTCCGTACACCTAATCCAA-C--CG--ACGAGCGGGTG
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
17649845 GGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATACGCAAGCCGTGGATCAATAGGGTG
325 GGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * *
17649910 GTAGGTGGGTTTAGGTACGTCTTCATATTTCTGCATGCCAATTCCTTTTTTATGGCTTGTAAATT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
17649975 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * *
17650040 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGCAAGGGGTTTTGGCCCC
520 ATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * *
17650105 AAACCTGGTAGATGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
585 AAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
17650170 AAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCAATTT-AGACACTTTAATGGCTAC
650 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTAC
** * *
17650234 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAAGGTGTGACTTCTCAAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* **
17650299 GGATAGGGGGCCAATATAAGGGCAAAGTAGTAGCACCCATCGCACATCATGTGCGCACACCCGCC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C
* * *
17650364 CCCCGACCCCCTCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGGC
839 CCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-GA--------C
* ** * * *
17650428 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
17650493 ACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAACGAACT
66 ACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
17650557 CCGTATGCCTAAGTCAACCCATGAGACGAGCGTGTGGGCGCTCAGCCGACCAGACGGGTGCGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * *
17650622 CGCAAGTCTGGGATCGGTCGGGTCCGCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * * * * * *
17650687 CCGATTTGATCTTAGGCTGGGAATGAACTCCGTACGCCTAAGCCAACCAATGAAACGAGTGGGC-
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
17650751 -G-G-GCGGGCGGGCACTACGTCGGCCAGAGAAATGGGATGCGTAAGCCGTGAATCGATAGGGTG
325 GGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
17650813 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
*
17650878 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * **
17650943 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTGCC
520 ATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * * *
17651008 AAAGTTGGTAGACGTGATGCTTGTATTTTTGTTGG-ATGCACAAAAAAATTCAGCTAAAAACTCG
585 AAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * ** * *
17651072 AAGTGCACAAGATTTTGTGACCATTTG-AAAAAGTGACCCCATTTTGGATACTTTAATGGCTATT
650 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
17651136 GGCGGCAAACTTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
715 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
17651201 GACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCAGTGTGCACACCACCCAC
780 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCA-CACCC-C
* * * * *
17651266 CGGCCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCATGTTCTCCGACGATGCTCCGGC
842 CGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-GA--------C
* * * * * *
17651327 GATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCAAGCTTGTG-TGGCCGT
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGC
*
17651391 AA--C-C---C---TC-GA---T---CT-GG--T---CT--G-AT-CTTAGATTGGGAATGAACT
65 AACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * * *
17651430 CCGTATGCCTAACTCAACCCACAAAACGAGCGTGCAGGCTCTCAGTCGGCCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** *
17651495 CGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTTGGT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* *
17651560 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGAGCG
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCG
* * * *
17651625 GGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAG
321 GGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
17651690 GGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
386 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* *
17651755 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCTATT
451 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * * * * *
17651820 TTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTAAAAATTTTTTTGGAAGGAGTTTTGG
516 TTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
** * * * *
17651885 TGCCAAAGTTGGTAGACGTGATCCCTT-TATTTTTGTTGGCATGGACAAAAAAATTTCAGCTAAA
581 CCCCAAACTTGGTAGAAGTGAT-CCTTGTATTTTTTTTGGCATGCACAAAAAAA-TTCAGCTAAA
* * * *
17651949 AACCCAAAGTGTACAGGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATG
644 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
17652014 GCTACT-GCTAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
709 GCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
17652078 GATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA
773 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * **
17652143 CCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGCGATGCTCCG
838 -CCCCC-GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A------G
17652208 AC
891 AC
* ** * * *
17652210 GATGGTGCCCCGGTGAAGAAAAATACGACACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
17652275 ACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAATT
66 ACCCTCGGTCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * *
17652339 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGTCAGAGGGGCAGGATG
130 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * ** * *
17652404 CGTAAGACGGGGATCGATCGGGTCCCTCTCTGTGAGCTACCGATCCTGCTACCGCAACCCTTGGT
195 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * * *
17652469 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCA
260 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * * * *
17652534 GGCGGGCGGGTGGGCACTATG-CTGGCTAGAGAG-CTGAGATGCGCAAGTCGTGGATCAATAGGG
325 GGCGAGCGGGCGGGCACTACGTC-GGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGG
* * **
17652597 TGGAAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
17652662 TTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * * *
17652727 TCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTCAAATTTTTT-TAGAAGGAGTTTTGAC
518 TCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGC
* * * *
17652791 CCAAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
582 CCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
17652856 TCGAAGTTTACAAGATTTTGTGGCCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCT
647 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17652921 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATG
712 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
17652986 AGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCC
777 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * **
17653051 CCGGCCCCCCCGATCGTCAGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGAC
841 CCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A------GAC
* * * *
17653113 GATGGTGCCCCGATGAAGAAAAATGA-GGCACCAGCACATCCCCGAGCCCAGCATGTGCTGCTGC
1 GATGGTGCCCTGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
17653177 AACCCTTGGTC-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
65 AACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
*** * * * * * * *
17653241 TCCGTATGCCTAAGTCAAAAAATGAAACGAGTGTGCGGGTGCTCAGTCGACCAGATGGGTGGCAT
129 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * **
17653306 GCGCAAGCCGAGGATCGGTCGGGT---CC-CT-C-T-CTGT-G----TGCTGCCATAACCCTCGG
194 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGG
* * * * * *
17653359 TCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGTGGAC
259 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
17653424 --G-GA-CGGGCGGGCACTACATCAGCCAGAGAGACGGGATCCGTAAGCCGTGGATCGATAGGGT
324 GGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
17653485 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAAT
389 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
17653550 TCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG-TTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * * *
17653614 GAAGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCC
519 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * * *
17653679 CAAACTTGGTAGACA-TGATCCTTGAATTTTTCTTGGCATGTACAAAAAAATTCAGCTAAAAAAT
584 CAAACTTGGTAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17653743 TGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
648 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17653808 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGA
713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
17653873 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
778 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
** * * * *
17653938 CG-GTCCTCCGATCGCCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGTGATGCTCC
842 CGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC----A-G--AC
* * * *
17653995 GGGGATGGTG-CCTCGGCGAAGAAAGATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
1 ---GATGGTGCCCT-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * * * * *
17654059 CGTAACCCTCGGT-TCGGTCCGATCGTAGATTAGGAATGAACTCCATATGCTTAGACTGGCAATG
62 CGCAACCCTCGGTCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * **
17654123 AACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCTCAACCGGCAAGAGGGGTAG
126 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * *
17654188 GATGCGCAAGCCGGGGATCGGTCGGGACCCCCTATGCATGCTGCCGATTCTGTTGCCACAACCCT
191 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* *
17654253 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACTAAACGAGCG
256 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
17654318 GGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAG
321 GGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
17654383 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
386 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* * * *
17654448 AATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCACGG-AACCACGACTCGTTTTTTAT
451 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTAT
** ** * *
17654512 TTTTCATGATTTTTGAAACTTTTTACGGTTCCAGATTTTTCAAAATTTTTTTCG-AAGAAGTTTT
515 TTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTT
* * * *
17654576 AGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
579 GGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
*
17654641 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATG
644 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
17654706 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
709 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
17654771 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAAC
774 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** *
17654836 CCCCTGGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTTTTTGGCGATGCTCCGAC
839 CCCC-GACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG----TT--C--T-C-CAGAC
* ** *
17654901 GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
17654966 A-CC-C--TC--G---G-TC-----C---G-AT---CT--G-AT-CTTAGACTGGGTATGAACTC
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
17655005 TGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * ** *** * * *
17655070 GTAAGACGAAGATCGATCGGGTCCCCCTCCATGTGCTGTCGATCTTGCTGTCGCAACCCTCGATC
196 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
** * * * *
17655135 TGGTCCAATCTTAGACTGGGAATGAATTCCATATGCCTAAGCGAACCGA-TAGAACGAGCGGGC-
261 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGGCG
* * * * * *
17655198 -G-G-GCGGGCGGGCACTACGCCGGCGAAAGAGATGGGATGCGCAAGCCGTGGATCGAAAAGGTG
325 GGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
17655260 GCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
17655325 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * * * * *
17655390 ATGATTTT-TTAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTTGGATGGATTTTTGGCTCC
520 ATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * * * * *
17655454 AAACTTAGCAGACGTGATCCTTGTATTTTTGTT-GCTATGTACAAAAAATTTCAGCTAAAAACTC
585 AAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
17655518 GAATTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGACCCCATTTCGGATACTTTAATGGCTAC
649 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
17655581 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGATGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
17655646 GGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGTACA--CCC-
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCG
* * *
17655708 A--------ATCACCAGAACCCCAATGACGCCGGTCAGGTTCTCCAG-C
844 ACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
* * * * **
17655748 GATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGTTGCA
1 GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * *
17655813 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAGTC
66 ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
17655878 CGTATGCTTAAGGCAACCCACGAAA
131 CGTATGCCTAAGTCAACCCATGAAA
17655903 TGATCGGTCC
Statistics
Matches: 17405, Mismatches: 2968, Indels: 2226
0.77 0.13 0.10
Matches are distributed among these distances:
811 9 0.00
812 4 0.00
813 3 0.00
814 7 0.00
815 4 0.00
816 2 0.00
817 3 0.00
818 5 0.00
819 4 0.00
820 2 0.00
821 8 0.00
822 13 0.00
823 2 0.00
824 9 0.00
825 1 0.00
827 77 0.00
828 3 0.00
829 3 0.00
830 5 0.00
831 1 0.00
832 4 0.00
833 1 0.00
834 2 0.00
835 2 0.00
836 3 0.00
837 2 0.00
839 12 0.00
840 326 0.02
841 203 0.01
842 11 0.00
843 6 0.00
844 3 0.00
846 4 0.00
847 72 0.00
848 5 0.00
849 8 0.00
850 11 0.00
851 5 0.00
852 7 0.00
853 29 0.00
854 11 0.00
855 2 0.00
856 2 0.00
857 7 0.00
858 30 0.00
859 5 0.00
860 10 0.00
861 4 0.00
862 7 0.00
863 8 0.00
864 6 0.00
865 63 0.00
866 12 0.00
867 43 0.00
868 36 0.00
869 16 0.00
870 165 0.01
871 114 0.01
872 127 0.01
873 466 0.03
874 34 0.00
875 61 0.00
876 512 0.03
877 273 0.02
878 117 0.01
879 288 0.02
880 428 0.02
881 330 0.02
882 119 0.01
883 408 0.02
884 216 0.01
885 470 0.03
886 383 0.02
887 276 0.02
888 516 0.03
889 629 0.04
890 267 0.02
891 778 0.04
892 1116 0.06
893 68 0.00
894 129 0.01
895 585 0.03
896 204 0.01
897 774 0.04
898 42 0.00
899 201 0.01
900 33 0.00
901 644 0.04
902 1043 0.06
903 2230 0.13
904 595 0.03
905 432 0.02
906 399 0.02
907 356 0.02
908 39 0.00
909 202 0.01
910 17 0.00
911 14 0.00
912 17 0.00
913 24 0.00
914 13 0.00
915 20 0.00
916 14 0.00
917 17 0.00
918 10 0.00
919 5 0.00
920 23 0.00
921 2 0.00
922 10 0.00
923 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
AACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGAC
CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC
Found at i:17639000 original size:26 final size:26
Alignment explanation
Indices: 17638971--17639023 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17638961 CTAGTCTGAC
*
17638971 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17638997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17639023 C
1 C
17639024 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17644125 original size:26 final size:26
Alignment explanation
Indices: 17644089--17644144 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17644079 CTGATCCGAT
17644089 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
17644115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
17644141 CTTA
1 CTTA
17644145 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:17645021 original size:26 final size:26
Alignment explanation
Indices: 17644992--17645044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17644982 CCGGTCCGAT
*
17644992 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17645018 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17645044 C
1 C
17645045 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17645240 original size:903 final size:899
Alignment explanation
Indices: 17643359--17646112 Score: 3516
Period size: 907 Copynumber: 3.1 Consensus size: 899
17643349 TGTGCTGCCA
* * *
17643359 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGAGGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17643424 ACGAGCGGGTAGGCGGGCGGGCAGGCCCTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGC--G--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17643489 TCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
17643554 GCTTGTAAATTCATACAATGGTCCTTTAAGCCTTAACGTGATGTTTCATGGCAAGAAGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
17643619 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGT
257 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* *
17643684 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAGGCAAAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
17643749 CTAAAAACACGAAGTGTACAAGATTTTGTGACAATTTG-AAAAAGATAT-CCCA-TTCAAGACAC
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTC-AGACAC
* *
17643811 TTTAATGGCCACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
450 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
17643876 AGGTTTGATGAGGGATAGGGGGGCAATATAAGGGCCAAGT------ACCCGTTGCACATCATGTG
515 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
17643935 TGCACA-CCCCCC-ACCCCCCGATCGCCGGAACTCCAATGCCGTCGGTCAGCTTATCCGACGATG
580 CGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * ** * * *
17643998 CTTCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGAGGCTAGCATGTGC
645 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
17644063 CGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAA
710 TGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * ** *
17644128 TGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTTGGCCAAAGGGGC
775 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
17644193 GAGATGCGCAAGTCGGTGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCCTACTGCCA
840 GGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
* **
17644253 CAACCCTCGGTCCGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * *
17644318 ACAAGCGGGCGGGCGGGCGGGCACTACGCCAGCTAGAGAAATGGGACGCACAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
17644383 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
17644448 GTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGACTCATTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
17644513 ATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
261 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * * *
17644578 TGTCCCCAAACTTGGTAGTCGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
17644643 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCGA-TTCAAACACTTTAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAA
*
17644707 TGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * **
17644772 TGATGAGGGATAGGTGGCCAATATAAAGGCCAAGTAGTAGCACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * *
17644837 ACCCGCCCCCCGGCCCCTCCGATCGCCCAAACCCCAATGCCACCAGTCAGGTTCTCCGGTGATGC
585 A--C-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * *
17644902 TCCGATGATGGTTCCCCGACGAAGAAAAATGCGGCACCAGCGCATGCCCGAACCCAGCATGTGCT
646 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
17644967 ACCGTAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
711 GCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
17645032 TAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGCG
776 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * *
17645097 GGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTG
841 GGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * * * * * *
17645156 CAACCCTCAGTCTGATCTGATCTTAGACTAGTAATGAACTTCGTATGCCTAAGCTAACCAACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
17645221 ACGAGCATGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 AC--G-A-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17645286 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
17645351 GCTTGTAAATTCATACAATGGTCCGTTAAGCCTCCACGTGAAGTTTCATGGCTAGACGACTCATT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
17645416 TTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGAA
257 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* * * * * *
17645481 CTTTTGTCCCCAAACTTGGTAGTCGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
17645546 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCAATTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
17645611 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * *
17645676 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGTAGCACCCATCACACATCATGTACG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * **
17645741 CACACCCGCCCCCCGACCCCCTCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA
582 CACA--C-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* * *
17645806 TGCT-CGACGATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATTT
643 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
17645870 GTTGCCGTAA-------ACC--T-CGATC-----C---G---G---TCCG-AT-CTTAGACTGGG
708 GCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
** * *
17645909 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGAGGGCGCTCAGTCGGCCAGAGGG
773 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** * * *
17645974 GCGGGATGCACAAGCCGGGGATCGACCGGGTCCCTCTCTGCGTGCTACCAATCCTGCTACCG
838 GCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * * *
17646036 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
17646101 ATGAGCGCGCGG
66 ACGAGCGGGCGG
17646113 CGCTCAACCG
Statistics
Matches: 1658, Mismatches: 181, Indels: 60
0.87 0.10 0.03
Matches are distributed among these distances:
876 7 0.00
877 1 0.00
878 1 0.00
880 180 0.11
881 2 0.00
882 4 0.00
885 1 0.00
888 1 0.00
890 318 0.19
891 112 0.07
892 5 0.00
894 66 0.04
896 5 0.00
897 23 0.01
899 2 0.00
901 6 0.00
902 4 0.00
903 308 0.19
906 64 0.04
907 548 0.33
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
Found at i:17646186 original size:158 final size:159
Alignment explanation
Indices: 17645881--17646251 Score: 458
Period size: 158 Copynumber: 2.3 Consensus size: 159
17645871 TTGCCGTAAA
* * * * *
17645881 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAA
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATAA
* * ** * * *
17645946 GCGTGAGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCTCT
66 GCGCGACGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGATCCCCCT
* *
17646011 CTGCGTGCTACCAATCCTGCTACCGCAAC
131 CTGCGAGCTACCAATCCTACTACCGCAAC
*
17646040 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATGA
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATAA
* ***
17646105 GCGCG-CGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTTGGATCCCCCT
66 GCGCGACGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGATCCCCCT
* * * * * *
17646169 CTGTGAGTTGCCGATCCTATTGCCGCAAC
131 CTGCGAGCTACCAATCCTACTACCGCAAC
* * * *
17646198 CCTCGGTCTGGTCTGATCTTAGATTGGGAATTAACT-CTGTGTGCCTAAGCCAAC
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGTCAAC
17646252 TGACGAAACT
Statistics
Matches: 182, Mismatches: 29, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
157 2 0.01
158 117 0.64
159 63 0.35
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATAA
GCGCGACGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGATCCCCCT
CTGCGAGCTACCAATCCTACTACCGCAAC
Found at i:17647878 original size:26 final size:26
Alignment explanation
Indices: 17647829--17647878 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17647819 CCGGTCCGAT
* *
17647829 CTTAGACTGGGAAAGAATTTCGTACG
1 CTTAGACTGGGAAAGAACTCCGTACG
*
17647855 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAAAGAACTCCGTA
17647879 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTACG
Found at i:17648749 original size:26 final size:26
Alignment explanation
Indices: 17648720--17648772 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17648710 CTGGTCCGAT
17648720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17648746 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17648772 C
1 C
17648773 CTATGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17650541 original size:26 final size:26
Alignment explanation
Indices: 17650512--17650564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17650502 CTGATCCGAT
* *
17650512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
17650538 CTTAGACTGGAAACGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
17650564 C
1 C
17650565 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAACGAACTCCGTATG
Found at i:17652323 original size:26 final size:26
Alignment explanation
Indices: 17652294--17652346 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17652284 CTGATTCGAT
17652294 CTTAGACTGGGAATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTCCGTATG
17652320 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
17652346 C
1 C
17652347 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:17653226 original size:26 final size:26
Alignment explanation
Indices: 17653197--17653249 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17653187 CCGATCTGAT
17653197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17653223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17653249 C
1 C
17653250 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17655868 original size:26 final size:26
Alignment explanation
Indices: 17655832--17655887 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17655822 CCGGTCTGAT
*
17655832 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17655858 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17655884 CTTA
1 CTTA
17655888 AGGCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17656873 original size:232 final size:230
Alignment explanation
Indices: 17656461--17656909 Score: 584
Period size: 232 Copynumber: 1.9 Consensus size: 230
17656451 GCCAAGTACA
* * ***
17656461 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAACTCCAATGCTGT
1 AGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCGATCGCAGAAACTCCAATGCCAC
* * * * *
17656526 CGGTCAGGTTCTCCAATGATGCTCCGGTGATGGTGCCAGGGTGCAGAAAAATGCGGCACCAGCAC
66 CGGTCAGGTTCTCCAATGATGCTACGGTGATGGTGCCACGGTGAAGAAAAATACGACACCAGCAC
* ** *
17656591 ATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGCTCCGATTTGATCTTAGACTGGGAATGAAC
131 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCTCCGATCCGATCTTAGACTGGAAATGAAC
*
17656656 TTCGTATGCTTAGACTGGGAATAGGGTCAAGCACC
196 TCCGTATGCTTAGACTGGGAATAGGGTCAAGCACC
* * *
17656691 AGCACCCATCGTACATCATGCGCGCACACGCCCCCCGGCCCCCTGATCATCAG-AAC-CCTAATG
1 AGCACCCATCGCACATCATGCGCGCACA--CCCCCCGGCCCCCCGATC-GCAGAAACTCC-AATG
* ** *
17656754 CCACCGGTTC-GGTTCTTCGGTGATGCTACGGTGATGGTGCCCCGGTGAAGAAAAATACGACACC
62 CCACCGG-TCAGGTTCTCCAATGATGCTACGGTGATGGTGCCACGGTGAAGAAAAATACGACACC
* *
17656818 AGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTT-CGTCCGGA-CCGATCTTAGACTGGA
126 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGC-TCC-GATCCGATCTTAGACTGGA
17656881 AATGAACTCCGTATGCTTAGACTGGGAAT
189 AATGAACTCCGTATGCTTAGACTGGGAAT
17656910 GAACTTCGTA
Statistics
Matches: 188, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
230 26 0.14
231 3 0.02
232 153 0.81
233 6 0.03
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (230 bp):
AGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCGATCGCAGAAACTCCAATGCCAC
CGGTCAGGTTCTCCAATGATGCTACGGTGATGGTGCCACGGTGAAGAAAAATACGACACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCTCCGATCCGATCTTAGACTGGAAATGAAC
TCCGTATGCTTAGACTGGGAATAGGGTCAAGCACC
Found at i:17656899 original size:26 final size:26
Alignment explanation
Indices: 17656870--17656922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17656860 CCGGACCGAT
17656870 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
17656896 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17656922 C
1 C
17656923 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17658676 original size:26 final size:26
Alignment explanation
Indices: 17658647--17658699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17658637 CCGATCCAAT
17658647 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
17658673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17658699 C
1 C
17658700 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17659001 original size:893 final size:883
Alignment explanation
Indices: 17656688--17659641 Score: 3860
Period size: 893 Copynumber: 3.3 Consensus size: 883
17656678 AGGGTCAAGC
* * * * *
17656688 ACCAGCACCCATCGTACATCATGCGCGCACACGCCCCCCGGCCCCCTGATCATCAGAACCCTAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCC-GATCGTCGGAACCCCAAT
* * ** * *
17656753 GCCACCGGTTC-GGTTCTTCGGTGATGCTACGGTGATGGTGCCCCGGTGAAGAAAAATACGACAC
63 GCCACCGG-TCAGGTTCTCCGG-GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACAC
* * * *
17656817 CAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTTCGTCCGGA-CCGATCTTAGACTGGA
126 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC-TCGTCC-GATCCGATCTTAGACTGGG
* *
17656881 AATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGC
189 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
17656946 GTGCGGGCGCTCAGCCGGGCAGAGGGGTGGGATACGCAAGCCGTGGATCGATCGAGTCCCCCTCT
254 GTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGACATGCAAGCCGAGGATCGATCGGGTCCCCCTCT
* * *
17657011 GCGTGCTATCGATCCTG-CT-ACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
319 -C-TGCTGTCGATCCTGCCTAACCCTTGGT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
17657074 GCCTAAGCCAACCGACGAAACAAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCATAGAGAT
381 GCCTAAGCCAACCGACG--A-AA-CGA----GCAGGCGGGCGGGCACTACGCCGGCCAAAGAGAT
*
17657139 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
438 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCA
17657204 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
503 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * **
17657269 CATTTCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTT
568 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
** * *
17657334 TAAAATTTTTTCCAAAGGAGTTTTTGACCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
633 TAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTG
* *
17657399 GTATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAA
696 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAA
* * * *
17657464 TGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTTTTTG
761 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
17657529 AGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
826 AGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
* * * *
17657587 ACCAGCACCAATCGCACATCATGTGTGCACACCGCCCGACGCCCCCGATCGTCGAAACCCCAATG
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG--GCCCCCGATCGTCGGAACCCCAATG
* * *
17657652 CCACCGGTCAGGTTCTCCGGCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
64 CCACCGGTCAGGTTCTCCGGGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAG
** * * * * * *
17657717 TGCATGCCTGAGCCCAGTATGTGCTACCACAACCCTCAGTTCGGTCCGATCTTAGAATGGGAATG
129 CACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC-GTCCGATCCGATCTTAGACTGGGAATG
*
17657782 AACTCCGTATGCTTAGACTGGGAATGAACT-TGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
193 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
17657846 GGGCGCTCAACCGGCCAGAGGGG-CGG-CATGCGCAAGCCGGGGATCGATCGGGT-CCCC-CTCT
258 GGGCGCTCAGCCGGCCAGAGGGGTAGGACAT--GCAAGCCGAGGATCGATCGGGTCCCCCTCTCT
* * * *
17657907 G-TGT-G---CTGCCACAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
321 GCTGTCGATCCTGCC-TAACCCT-TGGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
** * * * *
17657967 TAAGCCAACCGACGAAACGAGCAACCGGGCGGGCACTATGTCGCCCAGAGAGATGGGATGCGCAA
384 TAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAAAGAGATGGGATGCGCAA
* *
17658032 GCCGTTGATCGATAGGGTGGTAGGTGCATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
449 GCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17658097 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
514 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17658162 GGCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTT
579 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-AAAATTTTT
* *
17658227 T-GGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCATAAAA
643 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCATAAAA
* * * * * *
17658291 AACTTCAGCTAAAAGCTCGAAGTGTACAAGATTCTGTGACCATTT-AAAAAATTGTCTCCATTTG
708 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
** * * *
17658355 AGACACTTTAGCGGCTACTAGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAG
773 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
* * ** * * *
17658420 TTCTCCAGGTTTGATGAGGGAAAGGGGGATATTATATGGGCTAACT
838 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
* *
17658466 ACCAGCTCCCATCGCACATCATGTGCGCACACCCCCCCGGCCCACCGATCGCCGGAACCCCAATG
1 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CCGATCGTCGGAACCCCAATG
** * * * * * *
17658531 CTGCAGGTTAGGTTCTCCGAGGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAAGGCGGCACCA
64 CCACCGGTCAGGTTCTCCG-GGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCA
* * *
17658596 GCACATGCCCGAGCCCAGCAAGTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAAC
128 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC-GTCCGATCCGATCTTAGACTGGGAAT
17658661 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
192 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* **
17658726 CGGTCGCTCAGCCGGCCAGAGGGGTAGGACATGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACA
257 CGGGCGCTCAGCCGGCCAGAGGGGTAGGACATGCAAGCCGAGGATCGATCGGGTCCCCCTCT-C-
* *
17658791 TGCTGTCGATCCTGTTGCCGTAACCCTTGGTCAGGTTTGATCTTAGACTTGGAATGAACTCCGTA
320 TGCTGTCGATCC---TGCC-TAACCCTTGGTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
17658856 TGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAGCACTACACCGGCCAAAGAGATGGGTTGT
380 TGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAAAGAGATGGGATGC
17658921 GCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
445 GCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
17658986 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTATCATGGCA
510 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
17659051 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
575 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* * * * * *
17659116 TTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAAACCTGATCCTTGTAGTTTTGTTGGCATCCAC
640 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAT
* *
17659181 AAAAAAAATCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
704 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
* *
17659246 TTTCAGACATTTTAATGGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAA-AGGG-G
769 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTG
17659309 TGAGTTCAT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
834 TGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
* * ** *
17659359 ACAAGCACCCATCGCACATCATGTGTGCACACCCCCCAACCCCCTCGATCGTCGGAACTCCAATG
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC-CGATCGTCGGAACCCCAATG
* * * *** * ** * ** *
17659424 TCGCCTGTCAGGTTCTCTAATGATACTCCGGTGATAGTGCCAGGGCGAAGAAAAATGCCACACCA
64 CCACCGGTCAGGTTCTC-CGGGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCA
** * * * * * * *
17659489 ATACATGCCTGAGCCTAGCATGTGTTGCCGCAATCCTCGCTTCGATTCGATCTTAGACT-GGAAT
128 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG-TCCGATCCGATCTTAGACTGGGAAT
* * ** * *
17659553 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATACGCCTAAGTCAACCCATAAAACGAACATG
192 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
*
17659618 CGGGCGCTCAGCCGGCTAGAGGGG
257 CGGGCGCTCAGCCGGCCAGAGGGG
17659642 CGGGATGCGC
Statistics
Matches: 1790, Mismatches: 226, Indels: 85
0.85 0.11 0.04
Matches are distributed among these distances:
878 4 0.00
879 172 0.10
880 186 0.10
881 110 0.06
882 225 0.13
883 15 0.01
884 1 0.00
885 2 0.00
886 6 0.00
887 6 0.00
888 2 0.00
890 55 0.03
891 4 0.00
892 108 0.06
893 497 0.28
894 64 0.04
895 70 0.04
896 76 0.04
897 123 0.07
898 31 0.02
899 33 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCGGAACCCCAATGCC
ACCGGTCAGGTTCTCCGGGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGTAGGACATGCAAGCCGAGGATCGATCGGGTCCCCCTCTCTGCTGT
CGATCCTGCCTAACCCTTGGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAAAGAGATGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCATAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
Found at i:17659826 original size:26 final size:26
Alignment explanation
Indices: 17659797--17659849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17659787 CCGGTTCGAT
* *
17659797 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17659823 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17659849 C
1 C
17659850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17660750 original size:26 final size:25
Alignment explanation
Indices: 17660699--17660750 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
17660689 CTTGTTCGAT
* * *
17660699 CTTAGACTGGAATAAATTTCGTATG
1 CTTAGACTGGAATAAACTCCGCATG
*
17660724 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACT-GGAATAAACTCCGCATG
17660750 C
1 C
17660751 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGCATG
Found at i:17661594 original size:26 final size:29
Alignment explanation
Indices: 17661565--17661618 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 29
17661555 CGATCCGATC
17661565 TTAGACT-GGAATGAAC-T-CCGTATGCT
1 TTAGACTGGGAATGAACTTCCCGTATGCT
17661591 TTAGACTGGGAATGAACTTCCCGTATGC
1 TTAGACTGGGAATGAACTTCCCGTATGC
17661619 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 7 0.28
27 9 0.36
28 1 0.04
29 8 0.32
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (29 bp):
TTAGACTGGGAATGAACTTCCCGTATGCT
Found at i:17663556 original size:888 final size:887
Alignment explanation
Indices: 17659741--17665553 Score: 6890
Period size: 898 Copynumber: 6.5 Consensus size: 887
17659731 AAAAATGCGA
* * * * *
17659741 CACCAGCACATGTCAGAGCCCAGCATGTGCT-ACTGCAACCCTCGGTCCGGTTCGATCTTAGACT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGTCCGATCTTAGACT
* *
17659805 GGGAATGAACTTCGTATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * ** * ** *
17659870 AGCGTGTGGGCACTCAACCAGCCAGATGGGCGGGATGCTTAAGCCAGGGATCGACCAGGTCCCCC
130 AGCGTGCGGGCGCTCAGCCAGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * *
17659935 TCTGCGTGCTACCGATCCTACTG-TAGCAACCCTC-AGTCTGATCCGATCTTAGACTGGGAATGA
194 TCTACGTGCTACCGATCCTGCTGCCA-CAACCCTCGA-TCCGATCAGATCTTAGACTGGGAATGA
* * * * * * *
17659998 ACTCCGTATGCCTAAGCCAATCGATGAAATGAGTGGGCGGACGGGCGGGCGGGCACTACGCTGAC
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCAGACGGGCGAGCGGGCACTACGCCGGC
*
17660063 CAGAGAGACGGGATGCGTAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
318 CAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
17660128 ATTTCTACGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTT-A--CTTCAC
383 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** * * *
17660190 GTGAAGTTTCATTTCAAGACGACTCTTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTC
448 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * *
17660255 ATA-ATTTTTTAAAA-TTTTTCGGAAGGAGCTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTA
513 A-AGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
17660318 TTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTGACCATT
577 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
17660383 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
642 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17660448 TACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAA
707 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
17660513 GTACCAGCACACATCGCACATCATGTGCGCACACACCCCCCCGGCACCCCCGATCGTCGGAACCC
772 GTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCCGGCCCCCCCGATCGTCGGAACCC
* * * * *
17660578 CAATGCCGTCGATCAGGTTCTCCGACGATGCTCCAATGATGGTGCCCCGATGAAGAAAAATTTTG
835 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCCGATG--G---------G
* * *
17660643 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTTGTTCGATCTTAGACT-
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * *
17660707 GGAATAAATTTCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
17660772 GCGTGCGGACGCTCAGCC-GCCAGAGGGACGGGATGCGCAAGTCGGGGATCGATCAGGTCCCCCT
131 GCGTGCGGGCGCTCAGCCAGCCAGAGGG-CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * *
17660836 CTACGTGCTATCGATCTTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT
195 CTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACT
** * * * * *
17660901 TGGTATGCCT--------------------TAGAC-TG-G-GTGGGCACTACGTCGACCAGAGAG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTACGCCGGCCAGAGAG
17660943 ACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
325 ACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
17661008 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGT
390 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
17661073 TTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTTGAAACTTTTTGCGGTTCGAGATTT
455 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTT
* * * *
17661138 TTTCAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTT
520 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGT
* *
17661203 TTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAG
584 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
17661268 AGTGTCCCTATTTCAGACACTATAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
649 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
17661333 GAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
714 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
17661398 CACCCATCGCACACCACATGTG-G-ACACCCCCCCGG--ACCCCTATCGTCGGAACCCCAATGTC
779 CACCCATCGCACA--TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * * **** ***
17661459 GTCGGTCAGGTTGTCCGACGATGGTGCC-CCGACAAAG-AAAATGGG
842 GCCGGTCAGGTTCTCCGGCGATGCT-CCGACGATGGTGCCCGATGGG
* *
17661504 TCACCAGCACATGCCCGAGGCCCCAGCATGTGCTGTCGACAACCCTCAGG-CCGATCCGATCTTA
1 -CACCAGCACATGCCCGA-G-CCCAGCATGTGCTGTCG-CAACCCTC-GGTCTGGTCCGATCTTA
17661568 GACT-GGAATGAACTCCGTATGCTTTAGACTGGGAATGAACTTCCCGTATGCCTAAGTCAACCCA
61 GACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAAC-T-CCGTATGCCTAAGTCAACCCA
* * *
17661632 CGAAACGAGGGTGCGGGCGCTCAGCCAGCCAGAGGGGTTGGGAGTGCCACAAGCCTGGCGGGATC
123 CGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA-GGG-CGGGA-TG-CGCAAGCC--G-GGGATC
** * * * * * * *
17661697 AATCGGGTCCCCATCT-GGTGTTTGCCGATCCTGCTGCCCCACAACCTGTTGGTCCGATCCA-AT
181 GGTCGGGTCCCCCTCTACGTG-CTACCGATCCTGCTG--CCACAACC-CTCGATCCGAT-CAGAT
* *
17661760 CTGTAGACGGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGACGGGC-AGGCG
241 CT-TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGA-GCG
* * * * *
17661824 GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGTCATGAATCGATAGGGTGATAGGTGTGTTT
304 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTT
* * * *
17661889 AGGCACATCTTCTTATTTCCGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCGTACAATGGTC
369 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
17661954 CCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
434 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
17662018 ACTTTTTACGGTTCAGGATTTTTTAAAAAGTTTTT-AGAAGGA-TTTTTGCCCCAAAC-TGGTGG
499 ACTTTTTACGGTTCAAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
17662080 ATGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
563 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
17662145 ATTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACC
628 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
17662210 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
693 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * ** *
17662275 AATATAAGGGCCAAGTACCAGCACCCATCGCACACCACGTATGGACACCCCCCCCGGCCCCCCCG
758 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCG
* * * * * * * ****
17662340 ATCGTCAGAACCCCAATGTCGCCGGTCAGGTTGTCCGGCGATGGTGCCCA-G-GGGAAGAAAAAT
822 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-CCGACGATGG-TGCCCGAT
17662403 GGG
885 GGG
* * *
17662406 TCACCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACT
1 -CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * * * *
17662471 GGGAATGAATTCCATATGCTTAGACCGAGAA-GAACTCCGTATGCCTATGTCAACCCACGAAACG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
17662535 TGGGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCC
130 AGCGTGCGGGCGCTCAGCCAGCCAGAGG-GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * * *
17662600 TCTGCGTGCTACCGATCCTGCTGCTAAAACCTTTGGTCCGATCCA-ATCTTAGA-TGGGGAATGA
194 TCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGAT-CAGATCTTAGACT-GGGAATGA
**
17662663 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTAAACCGGCCAGA
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTACGCCGGCCAGA
* *
17662728 GAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGTGTTTACGCACATCTTCATATTT
322 GAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
17662793 CTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
387 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
17662858 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGA
452 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGA
* *
17662923 TTTTTTAAAAATTTTTTTAGAAGGATTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTT
517 TTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
17662987 TGTTGGCATGCATAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAA
581 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
17663052 AAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
646 AAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
17663117 CTTTAA-GGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
711 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
17663181 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGC
776 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* * * *
17663246 CGCCGGTCAGGTTCTCCAGCGATGCTCCGATGACGGTGCTCCGATGCCG
841 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC-CCGATG-GG
* * * * * **
17663295 CACCAGCACTTGCCTGAGCCCAGCATGTGCTGCCGCATCCCTCGATCTGGTTTGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * *
17663360 GTAATGAACTCCGTTTGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
17663425 GCATGCGGGTGCTCAGTC-GCCTAGACGGGCGGGATGCG-AAACCGGGGATTGG-CTGGGTCCCC
131 GCGTGCGGGCGCTCAGCCAGCC-AGA-GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCC
* * *
17663487 CTCTACGTGCTACTGATCCTGCTGCCGCAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAA
193 CTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAA
* * * * * *
17663552 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTAGGCGGGCTGGCACTACGTCAGCC
258 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGAC--G--GGCGAGCGGGCACTACGCCGGCC
* * * *
17663617 AGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTAATA
319 AGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
17663681 TTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACG
384 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** *
17663746 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTTTGGTTCG
449 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
* * *
17663811 GGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
514 AGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
17663876 TTTGTTGGCATACACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
579 TTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
17663941 GAAAAAAGTGT-CCCATTTCAGACACTTTAATGACTACCGGCAGCAAACCTGTAAAATCTCAAAT
643 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* **
17664005 GCTCTTTAAGGGGGTGTGAGTTCTCGAGCCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
708 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * **
17664070 TACAAGCACCCATCGCACATCATGCGCGCACACACCCCTCGACCCCCCCGATCGTCGGAATGCCA
773 TACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * * *
17664135 ATGCCGTCGGTTAGCTTCTACGGCGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGG
837 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC-CGAT---G--------GG
** * * * *
17664198 CACCAGCACATGCTTGTGCCCAGGATGTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* *
17664263 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGGAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
17664328 GCGTACGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCAT
131 GCGTGCGGGCGCTCAGCCAGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* ** * ** * * * *
17664393 CCACGTGCTGTCGATCCTGCTGTCTTAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACT
195 CTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACT
* *
17664458 CTGTATGCCTAAGCCAACCGACGAAAC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTACGCCGGCCAGAGAG
* * *
17664519 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATAGTTCTG
325 ACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** * *
17664584 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCCTCACGTGAAGT
390 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
17664649 TTAATGGCAAGCCGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCCAGATT
455 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCAAGATT
* * * * *
17664713 TTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTCTTTTTGT
519 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17664778 TGGCATGCAAAAAAAAAAATTCAGCTAAACATTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
584 TGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
17664843 AAAGTGTCCCCATTTTAGACACTTTAATGGTTACTGGCAGTAAACCTGTAAAATCTCAAATGCTC
647 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
17664908 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAGGTACT
712 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
17664973 AGCCCCCATCGCACATCATGTGCGCACACCCCCCTGGTCCCCCCGATCGCCGGAACCCCAATGCC
777 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* *
17665038 GCTGGTCAGGTTCTCCGGCGATCCTCCGACGATGGTGCCTCGGCGAAGAAAAATGTGG
842 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-C-C--C---G----ATG-GG
* *
17665096 CACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGT-TCGGTCCGATCTTAGACT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCCGATCTTAGACT
* * *
17665160 GGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCGGTATG-CT---T-----------A-G
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * *
17665209 A-C-T---GG-G---A---ATG--A-A-CTCCGTATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
130 AGCGTGCGGGCGCTCAGCCA-GCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
** ** * * * * * *
17665258 TCTGTGTGCTGTCGATCCGGCTCCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAAC
194 TCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAAC
* * * * *
17665323 TCTGTATGCCTAAGCTAACCGACGAAAAGAGCGGGCGGGCGGACGGACGGGCGGGCACTACGCCG
259 TCCGTATGCCTAAGCCAACCGACGAAACGAGCAGAC--G-GG-C-GA---GCGGGCACTACGCCG
* *
17665388 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
316 GCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
17665453 ACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTT
381 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TT
*
17665518 CACGTGAAGTTTCACGGGCAAGACGGACTCGTTTTC
445 CACGTGAAGTTTCA-TGGCAAGAC-GACTCGTTTTC
17665554 CTTGTATTTT
Statistics
Matches: 4313, Mismatches: 458, Indels: 301
0.85 0.09 0.06
Matches are distributed among these distances:
861 1 0.00
862 17 0.00
863 1 0.00
864 16 0.00
865 37 0.01
866 127 0.03
867 1 0.00
868 45 0.01
869 8 0.00
870 9 0.00
871 3 0.00
872 10 0.00
873 132 0.03
874 55 0.01
875 35 0.01
876 89 0.02
877 54 0.01
878 350 0.08
879 40 0.01
880 14 0.00
881 11 0.00
882 2 0.00
883 1 0.00
886 201 0.05
887 155 0.04
888 287 0.07
889 227 0.05
890 65 0.02
891 248 0.06
892 193 0.04
893 72 0.02
894 3 0.00
895 6 0.00
896 112 0.03
897 216 0.05
898 430 0.10
899 208 0.05
900 148 0.03
901 197 0.05
902 231 0.05
903 147 0.03
904 105 0.02
905 2 0.00
908 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCAGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
TACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTT
TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGATGGG
Found at i:17664290 original size:26 final size:26
Alignment explanation
Indices: 17664254--17664306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17664244 CTGATCTGAT
*
17664254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17664280 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17664306 C
1 C
17664307 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17665181 original size:26 final size:26
Alignment explanation
Indices: 17665152--17665230 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17665142 TCGGTCCGAT
17665152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
17665178 CTTAAACTAGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17665204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17665230 C
1 C
17665231 GCAAGCCGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17668650 original size:26 final size:26
Alignment explanation
Indices: 17668614--17668663 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17668604 TGGTCCAATT
*
17668614 TTAGACTGGGAATGAACTTCGTATTC
1 TTAGACTGGGAATGAACTCCGTATTC
17668640 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17668664 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTC
Found at i:17669347 original size:903 final size:900
Alignment explanation
Indices: 17665552--17671326 Score: 7705
Period size: 903 Copynumber: 6.5 Consensus size: 900
17665542 GGACTCGTTT
*
17665552 TCCTTGTA-TTTT-TTGGCGTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAATG-TTTT
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA-GATTTT
* *
17665613 GTGATCATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTTGT
65 GTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTGT
* *
17665678 AAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAAT
128 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
17665742 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCCGATCGC
193 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGC
* * * * * *
17665807 CGGAAAGCCCAACGCCGCCAGTCAGGTTCTCCGATGATGCTCTGACGATGGTGCCCTGACGAAGA
257 C-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * ** *
17665872 AAAATGTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCATTCCAATC
320 AAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
17665937 TTAGACTGGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
385 TTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
17666002 ACGAAACGAGCATAC-GGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGGTCGGTCG
449 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * * * *
17666066 AGTCCCCCTTTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTAAACTGG
514 GGTCCCCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGG
* * * *
17666131 GAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCA----GGCACAAC
579 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTAC
* * ** * * *
17666192 GCCGGGCAGAGAGACAGGATACGCAAGCCACGGATCGATAGGGTGTTAGGTTGCTTTAGGCACAT
644 GCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
17666257 CTTCATATTT-T-TGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAA
709 CTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
17666320 GCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTTTAAACTTTT
772 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* ** * *
17666385 TATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCTTAGACCTTA
837 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
17666449 TCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAGTTGAAG-GTACGAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *** *
17666513 TAACCATTTGAAAAAAGTGTAAACA-TTCAGACACTTTAATGGCTACTGGTAGC-AACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
17666576 ATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGAATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
17666641 A-GGCCAAGTA-CAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGA
* * * *
17666704 AACCCCAATGCCG-C--T-TGG-T-T-C-AGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAAT
260 AACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * *
17666761 GCAGCACCAAGCACATGCCCGAGCCTAGCATGTGCTACCACAACCCTTGGT-CGGTCCGATC-TA
325 GC-GCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
17666824 GA-TTGGAATGAACTCCGTA-GCTTAGACT-GGAATGAACTCCGTATGTCTAAGTCAACCCACGA
388 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
17666886 AACGAGCGTGC-GGTGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
453 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * *
17666950 CCCCTCTACGTGTTGTCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAAT
518 CCCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAT
* * * * *
17667015 GAATTCCGTATGCCTAAGCCAACCGAATGAAATGAACGGGCGGGC--G--GGTGGGCACTACGCC
583 GAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCC
* * *
17667076 GGCCAAAGAGACGGGATACGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTT
647 GGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
17667141 CATATTTTTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTT
712 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
17667206 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGG
777 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* *
17667271 TTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
842 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
17667330 TCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCCAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17667395 TGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * * *
17667460 ATCTCAAATGCTTTTTAAGGGGCTGTGAGTTTTCAAGGTTTGATTAGGAATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
17667525 AGGGCCAAGTACCATCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGCCGA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGA
* * * * ** *
17667590 AACCCCAATTCCGCCGGTCAGGTTCTCCGGTGACGCTCCGGTGATGGTGCCTTGGCGAAGAAAAA
260 AACCCCAATGCCGCCGGTCAGGTTCTCC-GAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* *
17667655 TGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTA
324 TG-CGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * * *
17667720 GATTGGGAATGAACTCCGTAAGCCTAGACTCGGAATGAACTCCGTATGTCTAAGTCAACCCACGA
388 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
17667785 AATGAGTGTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCGCAAGCCGAGGATC-GACCGGTC
453 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** *
17667849 CCCCTCTACATGCTGTCGATCCTGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
518 CCCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAT
* * * *
17667914 GAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGC--G--CTACTCCA
583 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCG
* *
17667975 GCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
648 GCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** *
17668040 ATATTTCTACATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
713 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
17668105 ACGTGAAGTTTCATGACAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
778 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * **
17668170 TC-AGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC-AACTTGGTAGACAAGA
843 TCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
17668227 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17668292 TGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
17668357 ATCTCAAATGCGCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
17668422 AGGGCCAAGTACCAGAACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGA
* * *
17668487 AACCCCAATGCCGCCGGTCATGTTC-CCTGACGATGCTCCTGCGATGGTGCCCCGATGAAGAAAA
260 AACCCCAATGCCGCCGGTCAGGTTCTCC-GA-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * *
17668551 GTATG-GCACCAGCACAT-CCCTAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCAATT
323 --ATGCGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * *
17668614 TTAGACTGGGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
385 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
17668679 TGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
450 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
*** * * * * ** *
17668744 GTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCCCGGTCTGGTCCAATCTTAGACTAGG
515 GTCCCCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGG
* *
17668809 AATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCAGGCGGGCACTACG
580 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACG
** * * * *
17668874 TAGGCCAGAGAGACAGGATGCGTAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATC
645 CCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
17668939 TTCATATTTCTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
710 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
17669004 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTCC
775 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * * *
17669069 AGTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTAGCCCCAAACATGGTAGATGTGA
840 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
17669130 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGAC-AAAAACTCGAAGTGTACAAGATTTT
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTACAAGATTTT
* * ** *
17669194 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGGTTGTAAACCTGTAA
65 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
17669259 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATAT
130 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
17669324 AAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGG
195 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGA
*
17669389 AACCCCAATACCGCCGGTCAGG---T------T-CTCCGGCGATGGTGCCCCGACGAAGAAAAAT
260 AACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* ** * * *
17669444 GCGACACCAGCACATCCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGATCCGATCTGATCTTAG
325 GCG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
** * *
17669509 ACTTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAA
389 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
17669574 ACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
454 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * * * * ** * * *
17669639 CCCTCTGCATGCTGCCAATGCTGCTACCGCAGCCCTCAGTCCTATCCGATCTTAAACTAGGAATG
519 CCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
* * ** ** *
17669704 AACTCCGTATGCCTAAGCAAACCGACGAAAGGAGCGGGCATGCGGGTGGGCAGGCACTACGCCGG
584 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGG
* *
17669769 TCAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
649 CCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** * *
17669834 TATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCA
714 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
17669899 CGTGAAG-TTCAATGGCAAGATGACTCGTTTTCTATTTTTCACGGTTTTCAAAACTTTTTACGGT
779 CGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * ** ** * *
17669963 TC-AGGATTTTCTAAAGTTTTTTCGGAAATAGTTTTGATCCCAAACTTGCTAGATGTGA
843 TCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
17670021 TCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17670086 TGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
** * *
17670151 ATCTCAAATGCTCTTTAAGTTGGTGTGATTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
17670216 AGGGACAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCGATCG-CTA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGA
* * ** *
17670280 GAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTACGATGGTGCCCCGATGAAGAAAA
260 -AACCCCAATGCCGCCGGTCAGGTTCTCCGA-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * * *
17670345 ATGCGGCACCAGCACATGCTCGAGCCCAGTATGTACTGTCGCAACCCTTGGTCCTGTCCGATCTT
323 ATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * *
17670410 TGACTGGGAATGACCTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATG
387 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
17670475 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGTAAGCCGAGGATCGATCGGGT
452 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * *
17670540 CCCCCTCTACATGCTACCGATCCTACCACCACAACTCTC-GATCCGGTCTGATCTTAGACTGGGA
517 CCCCCTCTACATGCTGCCGATCCTACTACCACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGA
** * * * *
17670604 ATGAACTATGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGCGGGCGGGCACTATGC
581 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGC
* * * * * *
17670669 CTGCTAGAGAGACTGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTGTAGGCACATCT
646 CGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17670734 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTTAGCCT
711 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* ***
17670799 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCTGATTTTTGAAACTTTTTTTA
776 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * ** *
17670864 GTTTGTGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTACCCCAAACTTGGTAGACATGA
841 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
17670924 TCCTTCTATTTTTGTTGGCGTGCACAAAACAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
17670989 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATAGCTACTGGCGGCAAACCTATAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
17671054 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
17671119 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCCGGCCCCCCCGATCGTCG
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCG
* * *
17671184 GAACCCCAATGCCGCCGGTTAGG---T------T-CTCCGGCGATGGTGCCTCGACGAAGAAAAA
259 AAACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * *
17671239 TGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGACGCGATCTT
324 TG-CGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-CGATCTT
*
17671303 AGACTGGGAATGAACTCCATATGC
387 AGACTGGGAATGAACTCCGTATGC
17671327 CTAAGCCAAC
Statistics
Matches: 4294, Mismatches: 502, Indels: 168
0.87 0.10 0.03
Matches are distributed among these distances:
879 1 0.00
880 166 0.04
881 305 0.07
882 49 0.01
883 30 0.01
884 105 0.02
885 30 0.01
886 92 0.02
887 2 0.00
888 1 0.00
889 6 0.00
890 9 0.00
891 745 0.17
892 40 0.01
893 111 0.03
894 87 0.02
895 111 0.03
896 23 0.01
897 512 0.12
898 377 0.09
899 154 0.04
900 66 0.02
901 1 0.00
902 256 0.06
903 973 0.23
904 41 0.01
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAA
ACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
CGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
CTCTACATGCTGCCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCC
AGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
Found at i:17669533 original size:26 final size:26
Alignment explanation
Indices: 17669504--17669556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17669494 CCGATCTGAT
**
17669504 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17669530 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17669556 C
1 C
17669557 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17672237 original size:712 final size:708
Alignment explanation
Indices: 17670571--17672756 Score: 3031
Period size: 708 Copynumber: 3.1 Consensus size: 708
17670561 CCTACCACCA
* * * ***
17670571 CAACTCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
* * *
17670636 ACGAGCGGACGGGAGGGCGGGCGGGCACTATGCCTGCTAGAGAGACTG-GATGCGCAAGCCGTGG
66 ACGAGCGGGCGGGA--GCGGGCGGGCACTACGTC-GCTAGAGAGAC-GAGATGCGCAAGCCGTGG
* * *
17670700 ATCGATAAGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* *
17670765 GGCTTGTAAATTCAAACAATGGTCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
17670830 TTTCTATTTTTC-CTGATTTTTGAAACTTTTTTTAGTTTGTGATTTTTTAAAATTTTTTTGGAAG
257 TTTCTATTTTTCAC-GATTTTTGAAACTTTTTAT-GTTCGAGATTTTTTAAAATTTTTTCGGAAG
** * * * *
17670894 GAGTTTTTACCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCGTGCACAAAACAATTC
320 GAG-TTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
17670959 AGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAG
384 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACAC
* * *
17671024 TTTAATAGCTACTGGCGGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGG
448 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
17671089 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
513 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
17671154 CGCATACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC--C-GG-T-T-AGG-TTCTC
578 CGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCGTCAGGTTCTCAGGATGCTC
** * *
17671212 CGGCGATGGTG-CCTCGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTG
642 CGGCGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
17671276 CCG
706 CCG
* * *
17671279 CAACCCTCGGT-CTGACGCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
1 CAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGA
* * * * * *
17671343 AAGGAGCAGGCGGGCAGGCGGGCGGGCACTACGTCGGTTAGAGAGACGAAAAGCGCAAGCCGTTG
65 AACGAGCGGGCGGG-A-GCGGGCGGGCACTACGTC-GCTAGAGAGACGAGATGCGCAAGCCGTGG
* *
17671408 ATCGATAGGGTGGTAGGTGGGTTTCA-GCACATGTTCATATTTCTGA-ATGCCAATGCCATTTTT
127 ATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTT
* * * *
17671471 ATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTT
190 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
17671536 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTC-AGGATTTTTTAAAATTTTTTCAGA
255 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTAT-GTTCGA-GATTTTTTAAAATTTTTTCGGA
* *
17671600 AGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATATTTTTTTGGCATGCAAAAAAAAA
318 AGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAA
* *
17671665 TTCAGCTAAAAACT-GAAGTGTACAAGATTTTGTTACCATTTGAAAAAATGTCCCCATTTTAGAC
381 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGAC
* *
17671729 ACTTTAATTGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
446 ACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
17671794 CGAGTTTTGGTGAGGAATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCTCATCATG
511 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
17671859 TGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCAGGCGA
576 TGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG-C-GTCAGGTTCTCA-G-GA
* *
17671923 TGCTCCGGCAATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGCATGT
637 TGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
17671988 GCTACCG
702 GCTACCG
* * *
17671995 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
*
17672060 ACGAGCGGGC-GGA-CGGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCAAGCCGTGGATC
66 ACGAGCGGGCGGGAGCGGGCGGGCACTACGTCG-CTAGAGAGACGAGATGCGCAAGCCGTGGATC
*
17672123 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTATGTGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
17672188 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
17672253 CTATTATTCATGATTTTTAAAACTTTTTGCTATTCGAGATTTTTTAAATTTTTTTCGGAAGGAGT
260 CTATTTTTCACGATTTTTGAAACTTTTT-ATGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
17672318 TTTGGCCCAAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGTATGCACAAAGAAATTAAGCT
324 TTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
17672383 AAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAATGTCCCCATTTCAAAAACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAATGTCCCCATTTCAGACACTTTA
* * * * * *
17672448 ATGGCTACTGGTAGCGAACCTGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTCTCAAGGT
452 ATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
17672513 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGAGCA
517 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
17672578 CACCCCCCCGGCCCCCTTGATCGTCGGAACCCCAACGTCGCCGATCAGGTTCTCTGTGATGCTTC
582 CACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCG-CG-TCAGGTTCTCAG-GATGCTCC
* * * *
17672643 GGTGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACC
643 GGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
17672708 G
708 G
* **
17672709 TAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
17672757 TTAGACTGGG
Statistics
Matches: 1307, Mismatches: 138, Indels: 60
0.87 0.09 0.04
Matches are distributed among these distances:
705 27 0.02
706 9 0.01
707 150 0.11
708 334 0.26
709 37 0.03
710 2 0.00
711 38 0.03
712 274 0.21
713 146 0.11
714 127 0.10
715 33 0.03
716 124 0.09
717 6 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGAGCGGGCGGGCACTACGTCGCTAGAGAGACGAGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTATGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATAG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCGTCAGGTTCTCAGGATGCTCCGGCGATGG
TGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
Found at i:17672766 original size:26 final size:26
Alignment explanation
Indices: 17672730--17672782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17672720 CCGGTTTGAT
17672730 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17672756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17672782 C
1 C
17672783 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17673660 original size:25 final size:25
Alignment explanation
Indices: 17673623--17673672 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
17673613 TGGTCCGATC
17673623 TTAGACTCAGAATGAACTCCATATG
1 TTAGACTCAGAATGAACTCCATATG
** *
17673648 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTCAGAATGAACTCCATATG
17673673 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (25 bp):
TTAGACTCAGAATGAACTCCATATG
Found at i:17674741 original size:878 final size:875
Alignment explanation
Indices: 17671992--17674741 Score: 3620
Period size: 878 Copynumber: 3.1 Consensus size: 875
17671982 GCATGTGCTA
* *
17671992 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGAC
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
17672057 GAAACGAGCGGGCGGACGGGCGGGCACTACG-TCGACCAGAGAGACGAGATGCGCAAGCCGTGGA
66 GAAACGAGCGGGC--A--GGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17672121 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTATGTGCCAATGCCAT-TTTTAT
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT--AATATTTTAT
*
17672185 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
189 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * * ** * * *
17672250 TTTCTATTATTCATGATTTTTAAAACTTTTTGCTATTCGAGATTTTTTAAATTTTTTTCGGAAGG
254 TTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAATG
* * * * *
17672315 AGTTTTGGCCCAAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGTATGCACAAAGAAATTAA
319 AGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTAA
* * *
17672380 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAATGTCCCCATTTCAAAAACT
383 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
* * * * *
17672445 TTAATGGCTACTGGTAGCGAACCTGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGAGTTC-TCA
448 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* *
17672509 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTG
513 A-GTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * *
17672574 AGCACACCCCCCCGGCCCCCTTGATCG-TCGGAACCCCAACGTCGCCGATCAGGTTCTCTGTGAT
577 AGCACACCCCCCC-GCCCCCCCGATCGCT-GGAACCCCAACGCCACCGGTCAGGTTCTCTGCGAT
* *
17672638 GCTTCGGTGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
640 GC-TCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* **
17672703 CTACCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
704 CTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * *
17672768 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
769 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCT--G-CGG---GA----
* * * * *
17672833 TGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCTTCTATGTGCTGCTGATCCTGCTG
824 T-GCA----CAAG-CGAGGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTACTG
* *
17672891 CCGCAACCCTCGGTCCGGTCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
17672956 GAAACGAGCGGACGGGCGGGCGGGCAGGCACTACACCGGCCAGAAAGACGGGATGCGCAAGCCAT
66 GAAACGA---G-CGGGCAGGC--G--GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
17673021 TGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGATATTTTA
123 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATAATATTTTA
*
17673086 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACAT-
188 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC-TC
* * * *
17673150 GTTTTCTATTTTTCACGATTTTTGATACTTTTTTCGGTACGGGATTTTTTAAAATTTTTTCGAAA
252 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
* * *
17673215 TGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTCTATTTTTTTTGCCATGCATAAAAAAATT
317 TGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATT
* * * *
17673280 CAGCCAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAAACA
381 AAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
*
17673345 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
446 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
* *
17673410 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGT
511 GAAGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
17673475 GAACACACCCCTCCCGGCCCCCCGATCGCCGGAACCCCAACGCTACCGGTCAGGTTCTC--C-A-
576 GAGCACACCCC-CCCGCCCCCCCGATCGCTGGAACCCCAACGCCACCGGTCAGGTTCTCTGCGAT
*
17673536 G--C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGC
640 GCTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * **
17673596 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTCAGAATGAACTCCATATG-TTAGACTGGGAA
705 TGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
* *
17673660 TGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCGATCGGCCAGAGGGGC
770 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT----GCG---G-TC-G-C-----TGC
* * * * * *
17673725 GGGATGCGCAAGCCAGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCAATCCTCCTG
820 GGGATGCACAAGCGA-GGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTACTG
* * * *
17673782 CCGCAACCCTTGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCTACTGAC
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
17673847 GAAACGAGC--G--GGCGGGCATTACGCTGGCCAGAGAGACGGGATACGTAAGCCGTGGAT-GAT
66 GAAACGAGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
17673907 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATAATATTTTATGGCTTGT
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATAATATTTTATGGCTTGT
* *
17673972 TAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTAT
196 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
*
17674037 TTTTTATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAATGAGTTTTG
261 TTTTCATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAATGAGTTTTG
*
17674102 GCCCCAATCTTGGTAGACGTGATGCTTGTATTTGTTTTGGCATGCACAAAAAAATTAAGCTAAAA
326 GCCCCAATCTTGGTAGACGTGATCCTTGTATTT-TTTTGGCATGCACAAAAAAATTAAGCTAAAA
** * *
17674167 ACTCGTTGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGG
390 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
* *
17674232 TTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGA
455 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGA
17674297 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACC
520 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACC
17674362 CCCCCGACCCCCCCGATCGCTGGAACCCCAACGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGT
585 CCCCCG-CCCCCCCGATCGCTGGAACCCCAACGCCACCGGTCAGGTTCTCT-GCGATGCT-CGGT
** * * * * *
17674427 GATGGTGCCCCGGTGAAGAAGAATACAGCACCACCACATGCCCGAGCCTAGCATGTGCTGCCGTA
647 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
* * * * * * **
17674492 ACCCTTGATCCGGTCCGTTCTTTGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATGAACAA
712 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
*
17674557 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCTGCGGGATGCACAAGCTGAGG-TCG
777 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTGCGGGATGCACAAGC-GAGGATCG
* *
17674621 G-CTGGGT-CCCTCTCAACATGCTGCCGATCCTACTG
841 GTC-GGGTCCCCT-TCTACGTGCTGCCGATCCTACTG
* * * *
17674656 CCGCAACCCTCGATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
17674721 GAAACGAGCGGGCAGGCGGGC
66 GAAACGAGCGGGCAGGCGGGC
17674742 GGGCGGGCAC
Statistics
Matches: 1629, Mismatches: 169, Indels: 127
0.85 0.09 0.07
Matches are distributed among these distances:
873 5 0.00
874 93 0.06
875 16 0.01
876 2 0.00
877 8 0.00
878 474 0.29
879 35 0.02
880 1 0.00
881 3 0.00
882 3 0.00
883 5 0.00
885 1 0.00
886 4 0.00
887 1 0.00
888 1 0.00
889 93 0.06
890 47 0.03
891 154 0.09
892 100 0.06
895 4 0.00
896 1 0.00
898 2 0.00
899 73 0.04
900 3 0.00
901 4 0.00
902 391 0.24
903 104 0.06
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATAATATTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAATGAGTTTTG
GCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGAT
GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCC
CCCCGCCCCCCCGATCGCTGGAACCCCAACGCCACCGGTCAGGTTCTCTGCGATGCTCGGTGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTGCGGGATGCACAAGCGAGGATCGGTCGG
GTCCCCTTCTACGTGCTGCCGATCCTACTG
Found at i:17677116 original size:26 final size:26
Alignment explanation
Indices: 17677080--17677132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17677070 ACAGTTCAAT
17677080 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17677106 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17677132 C
1 C
17677133 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17677517 original size:902 final size:889
Alignment explanation
Indices: 17674796--17677603 Score: 3707
Period size: 887 Copynumber: 3.2 Consensus size: 889
17674786 GGATCGGTAG
* * *
17674796 GGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * ** * *
17674861 CAAACCTTTTTACTGTTCTGAATTTTTTAAAAATTTTTCGCAACAATTTTTAGCCCCAAACTTGG
66 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
17674926 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
131 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
*
17674991 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
196 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
17675056 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATTGGGG
261 ACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17675121 GCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCC
325 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * *
17675186 GATCGCCGGAACCCAAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTACCCCGAC
390 GATCGCCGGAACCCCAATGCCGCCGGTCA-GTTTTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *
17675251 -AAAGAAAAATGTGGCATCAGCACATGCCCTAGCCCAGTATGTGCTACTGCAACCCTC-G--G--
454 GAAA-AAAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACCGCAACCCTCGGTCGTT
* *
17675310 ----TT---C--GG-T---C-CG-AT-CTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACC
518 CATCTTAGACTGGGATGAACTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * * **
17675359 CATGAAACGAGCGTGTGGGCGCTCAGTCGACT-AGAGGGCGAGAAGCGCAAGTCGGGGATCGACC
583 CATGAAACGAGCGTGCGGGCGCTCAGCCGCCTGAG-GGGCG-G-ATCCCAAGTCGGGGATCGGTC
** * *
17675423 GGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGAATG
645 GGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCAGGTCCGATCTTAGACTG
* * * * * * * *
17675488 GAAATGAACTCCATATGCCTAATCCAACTGATGAAACGAGCGG-G-CCGACGTGCGAGCACTACG
710 G-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGCGACGGGCG-GCGGGCACTACG
* *
17675551 -TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAAGTGGGTTTAGGCACAT
773 CT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
17675615 CTTCATATTTCT-TCATGCCAATGCCATTTTCAAGGCTTGTGAATTCATAGAAT
837 CTTCATATTTCTGT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
17675668 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTTTTCATGATTTT
1 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
*
17675733 CAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
66 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17675798 TAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTAC
131 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* **
17675863 AAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGTTAGCAA
196 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
17675928 ACCTGTAAAAGCTCAATTGCTCTTTAAGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAAGGGG
261 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
17675993 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCCTGTGCGCACACCCCCTGGCCCCCCCG
326 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * **
17676058 ATCGCCGGAACCCCAATGCCACCGATCA-TGTT-CTACG--G-T-----GATGGTGCCTCGGTGA
391 ATCGCCGGAACCCCAATGCCGCCGGTCAGTTTTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
17676113 AGAAAAATATGGCACCAGCACATGCCCGATCCCAGCATGTGCTACCGTAAACCTCGGTCTGATTC
456 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACCGCAACCCTCGGTC-G-TTC
* * * *
17676178 GATCTTAGATTGGGATTGAACTCCATTTGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
519 -ATCTTAGACTGGGA-TGAACT-CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
** * * *
17676243 CCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGTGGGATGCCCAAGTCGGGGATCGG
581 CCCATGAAACGAGCGTGCGGGCGCTCAGCCG-CCTGAGGGG-CGGAT-CCCAAGTCGGGGATCGG
* *
17676308 TCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTTGGTCAGATCCGATCTTAGAC
643 TCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCAGGTCCGATCTTAGAC
* *
17676373 TGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGG-G-CGGGCGGTCGGGCACTA
708 T-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGCGACGGGCGG-CGGGCACTA
* *
17676436 CGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
771 CGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
17676501 TCTTCATATTCCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
836 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17676555 GGTCCTTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
1 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * *
17676620 CAAAACTTTTTGCGGTTTGGGATGTTTTCAAATTTTTTGGGAAGGTGTTTTGGCCCCAAACTTGG
66 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17676685 TAGACGTGATCCTTGTATTTTT-TTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTA
131 TAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
17676749 CAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCA
195 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17676814 AACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGG
260 AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
17676879 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCC
324 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* ** * *
17676944 CGATCGCCGAAACCCCAATATCGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGA
389 CGATCGCCGGAACCCCAATGCCGCCGGTCA-GTTTTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
17677009 CGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAACGTGCTACCACAACCCTCGGTACAG
453 CGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACCGCAACCCTCGGT-C-G
17677074 TTCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
516 TTC-ATCTTAGACTGGG-ATGAAC-TCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * *
17677139 CAATCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCTGAGGGGCGGATCCACAAGCCGAGGATC
578 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GCCTGAGGGGCGGATCC-CAAGTCGGGGATC
* * * * ** **
17677204 GGTCGGGTCCCCCTCTGGGTACTGTCGATCCTGCTGTTGCAACCCTCGGTTTGGTCTAATCTTAG
641 GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCAGGTCCGATCTTAG
*
17677269 ACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTAGGCAGACGGGCAGGCGGGC
706 ACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGC-GACGGGC-GGCGGGC
*
17677334 ACTACGCTGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
767 ACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
17677399 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAAT
832 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
17677457 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
1 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * *
17677522 TGAAACGTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGG
66 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
17677587 TAGACGTGATCCCTGTA
131 TAGACGTGATCCTTGTA
17677604 AAATCTTAAT
Statistics
Matches: 1679, Mismatches: 199, Indels: 86
0.85 0.10 0.04
Matches are distributed among these distances:
860 55 0.03
861 3 0.00
864 1 0.00
865 1 0.00
866 1 0.00
868 4 0.00
869 2 0.00
871 121 0.07
872 263 0.16
877 2 0.00
879 1 0.00
882 1 0.00
884 1 0.00
885 1 0.00
886 63 0.04
887 492 0.29
888 122 0.07
890 3 0.00
891 3 0.00
893 1 0.00
894 1 0.00
897 2 0.00
898 111 0.07
899 156 0.09
900 5 0.00
901 1 0.00
902 260 0.15
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGCCGGAACCCCAATGCCGCCGGTCAGTTTTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACCGCAACCCTCGGTCGTTCAT
CTTAGACTGGGATGAACTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGCCGCCTGAGGGGCGGATCCCAAGTCGGGGATCGGTCGGGTCC
CCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCAGGTCCGATCTTAGACTGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGCGACGGGCGGCGGGCACTACGCTGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
Found at i:17678304 original size:762 final size:770
Alignment explanation
Indices: 17676816--17678358 Score: 2077
Period size: 762 Copynumber: 2.0 Consensus size: 770
17676806 AGGCAGCAAA
* *
17676816 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTTAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
17676881 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCG
66 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCG
* *
17676946 ATCGCCGAAACCCCAATATCGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACG
131 ATCACCGAAACCCCAATACCGTCGGTCAGG-TTT-C--CGATGCT----CGATGGTGCCCCGACG
*
17677011 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAACGTGCTACCACAACCCTCGGTACAGTT
188 AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGAACGTGCTACCACAACCCTCGGTACAGTT
* *
17677076 CAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
253 CAATCTTAGACTAGGAATGAACTTCGTATGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * * ** *
17677141 ATCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCTGAGGGGCGGATCCACAAGCCGAGGATCGG
318 ACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCAAAGGGGCGGATCCACAAGCCGAGGATCGA
**** * ** *
17677206 TCGGGTCCCCCTCTGGGTACTGTCGATCCTGCTGTTGCAACCCTCGGTTTGGTCTAATCTTAGAC
383 TCGGGTCCCCCTCTGGGTACTGTCGATCCTGCTACCACAACCCTCAGCCTGGTCCAATCTTAGAC
* * *
17677271 TAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTAGGCAGACGGGCAGGCGGGCAC
448 TAAGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC-AG-A-G-AGACGGGCAGGCGGGCAC
* * *
17677336 TACGCTGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
509 TACACCGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCA
** * *
17677401 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTA
574 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTA
17677466 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTT
639 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTT
*
17677531 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGGTAGACGTGA
704 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGGTAGACGTGA
17677596 TC
769 TC
*
17677598 CCTGTAAAATCTTAATTACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTTAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
17677663 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGTACACCCCTCC-GGCCCGCC
66 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-CCAGCCCCCCC
* * * *
17677727 GATCACCGGAACCCCAATACCGTCGGTCAGG-TT-CTATGCT-GATGGTGCCCCGGCGAAGAAAA
130 GATCACCGAAACCCCAATACCGTCGGTCAGGTTTCCGATGCTCGATGGTGCCCCGACGAAAAAAA
* ** * * * * * * **
17677789 ATATGGCACCAGCACATGCTTGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTTTGATCTT
195 ATACGGCACCAGCACATGCCCGAGCCCAGAACGTGCTACCACAACCCTCGGTACAGTTCAATCTT
*
17677854 AGACTAGGAATGAACTTCGTTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
260 AGACTAGGAATGAACTTCGTATGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
* * * ** *
17677919 AAACGAGCGTGCGGGCGCTCAACC-GACCAAAGGGGTGGGATGCTCAAGTTGGGGATCGATCGGG
325 AAACGAGCGTGCGGGCGCTCAACCAG-CCAAAGGGG-CGGATCCACAAGCCGAGGATCGATCGGG
* * * * *
17677983 TCCCCCTCTGTGTCCTG-CAGATCCTGGTACCACAACCCTTAGCCTGGTCCGATCTTAGACTAAG
388 TCCCCCTCTGGGTACTGTC-GATCCTGCTACCACAACCCTCAGCCTGGTCCAATCTTAGACTAAG
* * *
17678047 AATGAACTCCGTATGCCTAAGGCAACAGATG-AA-A-A-A-A-GGGCGGGCGGGCACTACACCGG
452 AATGAACTCCGTATGCCTAAGCCAACAGACGAAACAGAGAGACGGGCAGGCGGGCACTACACCGG
* *
17678106 CCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCA
517 CCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
17678171 TATTTCTGCAT-CCGAATGCCATTTTTATGGGTTGTAAATTCATGCAATGGGCCCTTAAGCCTTC
582 TATTTCTGCATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTC
* * * * *
17678235 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACTGT
646 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACGGT
* * * * * * *
17678300 TCGGGATTTTTTAAAATTTTTTTGGAATGATTTTTGGCCCCAGACTTTGTAGACGTGAT
711 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGGTAGACGTGAT
17678359 TCTTGTATTT
Statistics
Matches: 671, Mismatches: 85, Indels: 30
0.85 0.11 0.04
Matches are distributed among these distances:
761 2 0.00
762 247 0.37
763 1 0.00
764 1 0.00
767 1 0.00
769 1 0.00
770 1 0.00
771 165 0.25
772 96 0.14
776 6 0.01
780 2 0.00
782 146 0.22
783 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (770 bp):
CCTGTAAAATCTTAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCG
ATCACCGAAACCCCAATACCGTCGGTCAGGTTTCCGATGCTCGATGGTGCCCCGACGAAAAAAAA
TACGGCACCAGCACATGCCCGAGCCCAGAACGTGCTACCACAACCCTCGGTACAGTTCAATCTTA
GACTAGGAATGAACTTCGTATGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAACCAGCCAAAGGGGCGGATCCACAAGCCGAGGATCGATCGGGTCC
CCCTCTGGGTACTGTCGATCCTGCTACCACAACCCTCAGCCTGGTCCAATCTTAGACTAAGAATG
AACTCCGTATGCCTAAGCCAACAGACGAAACAGAGAGACGGGCAGGCGGGCACTACACCGGCCAG
AGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACGGTTCGGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGGTAGACGTGATC
Found at i:17679658 original size:26 final size:26
Alignment explanation
Indices: 17679629--17679679 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17679619 CGGTCCGATC
*
17679629 TTAGACAGGGAATGAACTCCGTATGG
1 TTAGACAGGAAATGAACTCCGTATGG
*
17679655 TTAGACTGGAAATGAACTCCGTATG
1 TTAGACAGGAAATGAACTCCGTATG
17679680 CCTAAATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACAGGAAATGAACTCCGTATGG
Found at i:17680128 original size:906 final size:891
Alignment explanation
Indices: 17677598--17680747 Score: 4304
Period size: 885 Copynumber: 3.5 Consensus size: 891
17677588 AGACGTGATC
* * * *
17677598 CCTGTAAAATCTTAATTACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * * *
17677663 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGTACACCCCTCCGG-CCCGCC
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
*
17677727 GATCACCGGAACCCCAATACCGTCGGTCAGG-T-T-CT-ATGCTGATGGTGCCCCGGCGAAGAAA
131 GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCTGATGGTGCCCCGGCGAAGAAA
* * * * *
17677788 AATATGGCACCAGCACATGCTTGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTTTGATCT
196 AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTTCGATCT
* * *
17677853 TAGACTA-GGAATGAACTTCGTTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
261 TAGAC-AGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
17677917 CGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGGGGTGGGATGCTCAAGTTGGGGATCGATCGG
325 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGATCGATCGG
* * * * * * * *
17677982 GTCCCCCTCTGTGTCCTGCAGATCCTGGTACC-ACAACCCTTAGCCTGGTCCGATCTTAGACTAA
390 GTCCCCCTCTGCGTGCTACCGATCCTGCTACCGA-AACCCTCAGTCTGGTCCGATCTTAGACTGA
* * * *
17678046 GAATGAACTCCGTATGCCTAAGGCAACAGATGAAA--AA----AGGGCGGGCGGGCACTACACCG
454 GAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAAGCGGCGGGCGGGCGGGCACTACGCCG
*
17678105 GCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC
518 GCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * * *
17678170 ATATTTCTGCATCCGAATGCCATTTTTATGGGTTGTAAATTCATGCAATGGGCCCTTAAGCCTTC
583 ATATTTCTAAATCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
17678235 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACTGT
647 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
* * * * * *
17678300 TCGGGATTTTTTAAAATTTTTTTGGAATGATTTTTGGCCCCAGACTTTGTAGACGTGATTCTTGT
712 TCGAGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGT
*
17678365 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTAT
777 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTAT
*
17678430 TTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
842 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17678480 CCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
17678545 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCCTGTGCGCACACCCCCCCGGCCCCCCT
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
** *
17678610 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTAC-G--G-TGATGGTGCCCCGGCGAAGAAA
131 GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCTGATGGTGCCCCGGCGAAGAAA
* * *
17678671 AATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCGT-GGTCTGATTCGATC
196 AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCC-TCGGTCCGGTTCGATC
** * *
17678735 TTAGATTGGGAATGAACTCCGTTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
260 TTAGACAGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
*
17678800 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGATCGACCGG
325 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGATCGATCGG
* * *
17678865 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGAA
390 GTCCCCCTCTGCGTGCTACCGATCCTGCTACCGAAACCCTCAGTCTGGTCCGATCTTAGACTGAG
* *
17678930 AATGAACTTCGTATGCCTAAGCC-A--AC-AAACGAAGCGAGCGGGCGGGCAGGCACTACGCCGG
455 AATGAACTCCGTATGCCTAAGCCAACGACGAAACGAAGCG-GCGGGCGGGCGGGCACTACGCCGG
** * *
17678991 CCAGAGAGACGGGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCA
519 CCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
17679056 TATTTCTAACTACCAATGCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
584 TATTTCTAAAT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
17679121 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTT
648 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTT
* * *
17679186 CGAGATTTTTTAAAA-TTTTTTTGAAAGGATTTTTGGCCCCAAACTTAGTAGATGCGATCCCTGT
713 CGAGATTTTTTAAAATTTTTTTTG-AAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGT
* * * *
17679250 ATTTTTGTTGGCATGCACAAAACAATTCA-CCAAAAAATGCGAAGTGTACAATATTTTGTGACTG
777 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAATATTTTGTGACTA
17679314 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
841 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17679365 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGCT-GGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * * *
17679429 CCAATAAAAGGGCCAAGTACCAGCTCCTATCGCACATCATGTGAGCACA-CCCCCCGGCCCCCCC
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* *
17679493 GATCACCGGAACCCCAATGCCATCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGC
131 GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGCT-----GATGGTGCCCCGGC
* * * *
17679558 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
189 GAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGT
* * * * *
17679623 CCGATCTTAGACAGGGAATGAACTCCGTATGGTTAGACTGGAAATGAACTCCGTATGCCTAAATC
254 TCGATCTTAGACAGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
17679688 AACCCACAAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
319 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGATC
* * * * * * * * *
17679753 GGTCGGGTCCCCCTCTGTGTGCTACGGATCTTGCTGCCGAAACCCTCGGTTTGATCTGATCTTAG
384 GATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGAAACCCTCAGTCTGGTCCGATCTTAG
*
17679818 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGC
449 ACTGAGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA------A-GC-GGCGGGCGGGC
* *
17679883 GGGCACTACGTCGGCCAGAGAGACGGGAAGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTT
505 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTT
** *
17679948 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGT
570 TAGGCACATCTTCATATTTCTAAAT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
17680013 CCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
634 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * * *
17680078 AACTTTTTACGGTTATAGATTTTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCAAAACTTAGAAG
699 AACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCCAAACTTAGTAG
* * * *
17680143 ACATGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
764 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAT
* * * * *
17680208 ATTTTGTGACCATTTGAAATAAGTG-CCCCTATTTTAGACACTTTACTGGCTACTGGTAGCAAA
829 ATTTTGTGACTATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17680271 CCTATAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
17680336 CCAATATAAGGGCAAAGTACCGGCACCCATCGCACATCATGTGCGCACAGCCCCCCC-GACCCCC
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCC
* * *
17680400 CGATCACCGGAACCCTAATGCCGTCAGTCAGGTTCTCCAATGATGCTCCGGTGATGGTGCCCCGA
130 CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATG---C--TGATGGTGCCCCGG
*
17680465 CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
188 CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGG
* * * * * * * *
17680530 TTTGATCTAAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCATATTCCTAAGC
253 TTCGATCTTAGACAGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
17680595 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGTCGGGGAT
318 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGAT
* * * * * *
17680660 CGATCGGGTCCCCCTCTGCATGCTACCGATCTTGCTACCGTAACCCTCGGTCCGGTCCAATCTTA
383 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGAAACCCTCAGTCTGGTCCGATCTTA
*
17680725 GACTGGGAATGAACTCCGTATGC
448 GACTGAGAATGAACTCCGTATGC
17680748 TTAGACTAGG
Statistics
Matches: 2007, Mismatches: 207, Indels: 82
0.87 0.09 0.04
Matches are distributed among these distances:
878 3 0.00
879 1 0.00
880 2 0.00
882 118 0.06
883 353 0.18
884 65 0.03
885 402 0.20
886 4 0.00
888 1 0.00
889 1 0.00
893 1 0.00
894 264 0.13
895 1 0.00
898 2 0.00
899 6 0.00
905 5 0.00
906 397 0.20
907 64 0.03
908 309 0.15
909 6 0.00
911 1 0.00
913 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCTGATGGTGCCCCGGCGAAGAAA
AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTTCGATCT
TAGACAGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGTCGGGGATCGATCGGG
TCCCCCTCTGCGTGCTACCGATCCTGCTACCGAAACCCTCAGTCTGGTCCGATCTTAGACTGAGA
ATGAACTCCGTATGCCTAAGCCAACGACGAAACGAAGCGGCGGGCGGGCGGGCACTACGCCGGCC
AGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTAAATCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGA
GATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
Found at i:17680750 original size:26 final size:26
Alignment explanation
Indices: 17680721--17680773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17680711 CCGGTCCAAT
*
17680721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17680747 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17680773 C
1 C
17680774 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17680831 original size:185 final size:185
Alignment explanation
Indices: 17680514--17680932 Score: 529
Period size: 185 Copynumber: 2.3 Consensus size: 185
17680504 ATGTGCTGCC
* * *
17680514 ACAACCCTCGGTCCGGTTTGATCTAAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAA
1 ACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAA
* ** * * *
17680579 CTCCATATTCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
66 CTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
17680644 TGCACAAGTCGGGGATCGATCGGGTCCCCC-TC-TGCATGCTACCGATCTTGCTACCG
131 TGCACAAGCCGAGGATCGATCGGGTCCCCCTTCGTG--TCCTACCAATCTTGCT-CCG
* * * *
17680700 -TAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
1 ACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAA
* * * * *
17680764 CTCCGTATGCCTAAGTCAACTCACAAAACGAGCATACGGGGGCTCAGTCGGCCAGAGGGGCGGGA
66 CTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * **
17680829 TGCGCAAGCCGAGGATCGGTTGGGTCCCCCTTCGTGTCCTACCAATCTTGCTGTG
131 TGCACAAGCCGAGGATCGATCGGGTCCCCCTTCGTGTCCTACCAATCTTGCTCCG
* *
17680884 ACAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
1 ACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
17680933 CTAAGCCGAC
Statistics
Matches: 198, Mismatches: 32, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
184 1 0.01
185 193 0.97
186 2 0.01
187 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
ACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAA
CTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCACAAGCCGAGGATCGATCGGGTCCCCCTTCGTGTCCTACCAATCTTGCTCCG
Found at i:17681036 original size:159 final size:158
Alignment explanation
Indices: 17680747--17681120 Score: 439
Period size: 159 Copynumber: 2.4 Consensus size: 158
17680737 ACTCCGTATG
* * * * * **
17680747 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTC-ACAAAACGAGCATACGGGGGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCGTGCGGGCACTCAG
* ** * *
17680811 TCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTTCGTGTCCTACCAATC
65 CCAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTTCGTG-CCTACCAATC
** * *
17680876 TTGCT-GTGACAACCCTCAGTCTGGTTCGAT
129 TTGCTACCG-CAACCCTCAGTCTGGTGCAAT
*
17680906 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
17680971 CAATCAGAGGGGTGGGATGCACCAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG-CTGCCGATC
66 CAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCT-T-CGTGCCTACCAATC
*
17681035 TTGCTACCGCAACCCTCGGTCTGGTGCAAT
129 TTGCTACCGCAACCCTCAGTCTGGTGCAAT
* * *
17681065 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGG
17681121 CCGGGCGGGG
Statistics
Matches: 183, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 176 0.96
160 2 0.01
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCACTCAGC
CAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTTCGTGCCTACCAATCTT
GCTACCGCAACCCTCAGTCTGGTGCAAT
Found at i:17682710 original size:26 final size:26
Alignment explanation
Indices: 17682659--17682711 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17682649 CCAGTCCGAT
** *
17682659 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTTCATATG
17682685 CTTAGACAAGGAATGAAC-TCTATATG
1 CTTAGACAAGGAATGAACTTC-ATATG
17682711 C
1 C
17682712 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTTCATATG
Found at i:17683441 original size:26 final size:26
Alignment explanation
Indices: 17683412--17683464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17683402 CTGGTCCGAT
*
17683412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17683438 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17683464 C
1 C
17683465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17687018 original size:26 final size:26
Alignment explanation
Indices: 17686989--17687041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17686979 CCGGTCTGAT
17686989 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17687015 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17687041 C
1 C
17687042 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17687373 original size:904 final size:900
Alignment explanation
Indices: 17682953--17687774 Score: 6546
Period size: 888 Copynumber: 5.4 Consensus size: 900
17682943 TTATGGCTTG
** * * * * *
17682953 GAAACTTTTTACGGTTCAAGATTTTTTTAAA-TTTTTCTTGAAGGAGTTTTGGCCCAAAACATAG
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17683017 TAGACATGATCCCTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
65 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
17683082 AAGATTTTGTGACCGTTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGTAGCAT
130 AAGATTTTGTGACCATTTGAAA-AAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
17683147 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
193 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17683212 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCGGCCCCCC
258 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
*** * ** *
17683277 GATCATTGGAACCCCAATGCCG-CCAGTCAGGTTCTCCGTAGATGCTCCGGCGATGGTGCCCCGA
322 GATCGCCGGAACCCCAATGCCGTCGA-TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * ** * * *
17683341 CGAAGAAAAATGGGGCACCAGCACATTCTAGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGG
386 AGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
* *
17683406 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCCATATGCCTAAGT
451 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * ** * *
17683471 CAACCCATGAAACGAGTGTGGCGGGTGCTCAGCTGGCTAGAGGGGCGACATGCACAAGCCGGGGA
516 CAACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* * * * * * *
17683536 TCGGCCGAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTT
580 TCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* * * * * *
17683601 ATACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAGTGTGCGGGCGGACGGGCGG
645 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGG
* * * ** *
17683666 GCAATACGTCGGCCAGTGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTTGGTTTA
710 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
17683731 GGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTTATGGCTTGTAAA-TCATACAATGGTC
775 GGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
17683795 CCTTAAGCCCTCACGAGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAATTTT
839 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * *
17683857 AAAACTTTTTACGGTTCGAGATTTTATAAAGTTTTTTCGGAGGGAGTTTTGGCCCCAAACTTAGT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
17683922 AGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
66 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17683987 A-ATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
131 AGATTTTGTGACCATTTG-AAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17684051 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGACAGGGGG
194 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
17684116 CGAATATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCTCCCCG
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCG
* * * * * * *
17684181 ATCGCCGGAACCCCAATACCGCCGGTCAAGTTCTCCAGCGATGCTCTGACGATGGTGCCCCGGCA
323 ATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GAA
* *
17684246 -AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGGTGCCGTAACCCTCGGTCCAGG
387 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC-GG
* * *
17684310 -CCGATCTTCGGCTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
451 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
17684374 CAACCAATGAAACGAGAGTGCGGGTGCTCAGCCGGCCAGACGGGTGGGATGCGCAAGCCGGGGAT
516 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * * * * * * * *
17684439 CGGCCGGGTCCCCTTTTGCGTGTTACCGATCATGCTACCACAACCCTCGGTCTGATCTGATCTTA
581 CGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
* *
17684504 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCAGGCGGGCGGG
646 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGG
* * *
17684569 CACTACGCCGGTCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAG
711 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17684634 CCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
776 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17684699 TTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTT
841 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
17684759 GAAACTTTTTACGGTTCGGGATTTTCTAAAATTTTTTTGAAAGGATTTTTGG-CCAAAACTTGGT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
17684823 AGACGTGATCCTTGTATTTTT-TTGGCACGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACA
66 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
17684886 AGATTTTGTGACCATTTCAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
131 AGATTTTGTGACCATTT-GAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
17684951 CTGTAAAATCTCAAATGCTCTTCAAGGGGGT-TGAGTTCTCGAGGTTTGATGAGGGATAGGGAGC
195 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
17685015 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
260 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * **
17685080 CGTCGGAACCCCAATGCCGTCG-TCAGGTTCTCTGGAGATGCTCCGACGATGGTGCCTCGGCGAA
325 CGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAAGAA
* * ** *
17685144 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTACGGTCCG
390 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCG
* * *
17685209 ATCTTAGACTGGGAATGAACTCC----G--TA-ACTGGGAATCAACACTGTAT-CCTAAGTCAAC
455 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
17685266 CCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGAC
520 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAC
* * ** *
17685331 CGGGCCCCCCTCTGCGTGCCACCGATCTTGCTAACGCAACCCTTGGTCTGGTCCGATCTTAGACT
585 CGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* ** *
17685396 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGATGGGTGGGCGGGCACT
650 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACT
* * * *
17685461 ACGTCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGAGGGTTTAGGCAC
715 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
17685526 ATCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAACTTCATACAATGGTGCCTTAA
780 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
17685591 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTACGATTTTT
845 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
17685647 GATACCTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGG
1 GAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
17685711 TAGACGTAATCCTTGTATTTTTGTTGACATGCACAAAACAATTCAGCTAAAAACTCGAAGCGTAC
65 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17685776 AAGATTTTGTGACCATTT-AAAAAATGTCCCATTTCA-AGCACTTTAATGGCTA-TGGTAGTAAA
130 AAGATTTTGTGACCATTTGAAAAAGTGTCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAA
17685838 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
194 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
17685903 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGAGCACA-CCCCCGGCCCCCCCG
259 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
** * * * * * *
17685967 ATCGCCAAAACCCCAGT-CC-TGCGGTCAGGTTCTCCGACGATGCTCCGTCGATGGTGCCTCGGC
323 ATCGCCGGAACCCCAATGCCGT-CGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC-CCGA
* * ***
17686030 A-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ACGTAA-CCTCGGTCTAA
386 AGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
* * * * *
17686092 TCTGATCTTAGGCTGGG-ATGAACTCCATAAGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGT
451 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
17686156 CAACCCACGAAACGAGCGTGCGGGCGCCCAGTCGGCCAGAGGGGCGGGATGCGCAA-TCGGGGAT
516 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
* * *
17686220 CGATCGGGT-CCCCTCTGCGTGCTGCCGATC-T--TG--GCAACCCTCGGTCTGGTGCGATCTTA
581 CGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
*
17686279 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----GCGGGC-GGCGGGCGGG
646 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGG
* * *
17686339 CATTACCCGCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATA-GGTGGTAGGTGGGTTTA
711 CACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
17686403 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
775 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
17686468 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-GTTTTCATGATTTTTT
840 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTT
17686529 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAAAC-TGG
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGG
* * * ** *
17686593 TAGACATGATCCATGTATTTTTGTTGGCATGTACAAAAAAACGCATCTAAAAACTCGAAGTGTAC
65 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
17686658 AAGATTTTGGGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
130 AAGATTTTGTGACCATTTGAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17686723 CCTGTAAAATCTCAAATGATCTTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGG
194 CCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17686787 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAGACCCCCGGCGGCTCCC
258 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--CGGC-CCC
* * * *
17686852 CCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCG
320 CCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * *
17686917 AAGAAGAAAAATGCAGCACCGGCACATGCCCGAGCCCAGCTTGTGCTGTCGTAACCCTCGGTCCG
385 AAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* *
17686982 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAG
450 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
17687047 TCAACCCACGAAAACGAGCGTGCGGGCGCTTAGCCGGCTAGAGGGGCGGGATGCGTAAGTCGGGG
515 TCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGG
* * * *** * * **
17687112 ATCAACTGGGTCCCCCTCTGTGTGCTGTTGATCTTACTGCCACAACCCTCGGTCTGGTGTGATCT
579 ATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCT
* * *
17687177 TATACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCG
644 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCG
* * * * * *
17687242 GTCACTACGCCAGCCAGAGTGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTTGGTGGGTTT
709 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
17687307 AGGTACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTC
774 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * *
17687371 CCTTAAGGCTTCACATGAAGTTTCACGGCAAGACGAATCGTTTTCCAATTTTTCACGATTTTT
839 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTTTTCATGATTTTT
* * * * *
17687434 GAAAC-TTTTGCGGTTCAGGATTTTTTAAAAATATTTTCGGAAGGTGTTTTGGCCCCAAACTTTG
1 GAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17687498 TACACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCT-AAAACTC-AGAGCGTA
65 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTA
17687560 CAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCATTTCAGACACTTTAATGAG-TACTGGCAGC
129 CAAGATTTTGTGACCATTTG--AAAAAGTGTCCCATTTCAGACACTTTAATG-GCTACTGGCAGC
*
17687624 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATTAG
191 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAG
* * *
17687689 GCGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACATGATGTGCGCACACCCCCCGGCCCC
255 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
17687753 CTCCGATCGCCGGAACCCCAAT
319 C-CCGATCGCCGGAACCCCAAT
17687775 CCTACCTGTA
Statistics
Matches: 3472, Mismatches: 372, Indels: 149
0.87 0.09 0.04
Matches are distributed among these distances:
881 35 0.01
882 235 0.07
883 57 0.02
884 23 0.01
885 85 0.02
886 44 0.01
887 91 0.03
888 448 0.13
889 349 0.10
890 19 0.01
891 71 0.02
892 74 0.02
893 73 0.02
894 73 0.02
895 21 0.01
896 108 0.03
897 26 0.01
898 87 0.03
899 98 0.03
900 96 0.03
901 48 0.01
902 362 0.10
903 420 0.12
904 372 0.11
905 149 0.04
906 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
GCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAAGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACC
GGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
Found at i:17687999 original size:24 final size:22
Alignment explanation
Indices: 17687898--17688028 Score: 85
Period size: 21 Copynumber: 5.9 Consensus size: 22
17687888 TCTTTTGTAT
*
17687898 TTTATTATTTATTATTATTATATG
1 TTTA-TATTTATT-TTATTATATA
* * * *
17687922 TATATTTTTACTTTTTTTATTTA
1 TTTATATTTA-TTTTATTATATA
*
17687945 -TT-TATTTATTTTGTTA-ATA
1 TTTATATTTATTTTATTATATA
*
17687964 TTTATATGTATTTTATTATATA
1 TTTATATTTATTTTATTATATA
17687986 GTTCTATATTTATTATATATTATA-A
1 -TT-TATATTTATT-T-TATTATATA
17688011 -TT-TATTTATTATTATTAT
1 TTTATATTTATT-TTATTAT
17688029 TTTTCTTGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.02
20 15 0.17
21 27 0.31
22 5 0.06
23 15 0.17
24 14 0.16
25 2 0.02
26 7 0.08
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (22 bp):
TTTATATTTATTTTATTATATA
Found at i:17688023 original size:17 final size:17
Alignment explanation
Indices: 17687975--17688030 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
17687965 TTATATGTAT
*
17687975 TTTATTATATAGTTCTATA
1 TTTATTATATA-TTATA-A
17687994 TTTATTATATATTATAA
1 TTTATTATATATTATAA
*
17688011 TTTATT-TATTATTATTA
1 TTTATTATA-TATTATAA
17688028 TTT
1 TTT
17688031 TTCTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 4 0.12
19 11 0.32
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTATTATATATTATAA
Found at i:17688996 original size:10 final size:10
Alignment explanation
Indices: 17688981--17689007 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
17688971 CCAGGTTTTT
17688981 TTTTTTTGAA
1 TTTTTTTGAA
17688991 TTTTTTTGAA
1 TTTTTTTGAA
17689001 TTTTTTT
1 TTTTTTT
17689008 TATTTGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:17689079 original size:17 final size:16
Alignment explanation
Indices: 17689045--17689084 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17689035 TTAGATTAGG
*
17689045 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
17689061 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
17689078 TTTATTT
1 TTTATTT
17689085 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:17689091 original size:17 final size:17
Alignment explanation
Indices: 17689071--17689118 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
17689061 TTTATCTTAA
17689071 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
17689087 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
17689105 TTTCTATTTTTATT
1 TTT-TATTTTTATT
17689119 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:17689118 original size:14 final size:14
Alignment explanation
Indices: 17689071--17689128 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
17689061 TTTATCTTAA
17689071 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
17689083 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
17689097 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
17689112 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
17689126 TTT
1 TTT
17689129 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:17689133 original size:17 final size:17
Alignment explanation
Indices: 17689094--17689133 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
17689084 TTTGTTTTAC
*
17689094 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
17689111 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
17689125 TTTTCTTTA
1 TTTTCTTTA
17689134 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:17689291 original size:117 final size:119
Alignment explanation
Indices: 17689136--17689372 Score: 372
Period size: 117 Copynumber: 2.0 Consensus size: 119
17689126 TTTCTTTAAA
**
17689136 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 TAAAAAT-AAAATTTCC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
17689201 AAATCAAAGTTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
64 AAAT-AAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
17689257 TAAAAAT-AAATTTCC-AAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
17689320 ATAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
66 ATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
17689373 CTACACAAGA
Statistics
Matches: 109, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
116 7 0.06
117 87 0.80
119 8 0.07
121 7 0.06
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (119 bp):
TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17689303 original size:58 final size:60
Alignment explanation
Indices: 17689136--17689372 Score: 340
Period size: 59 Copynumber: 4.0 Consensus size: 60
17689126 TTTCTTTAAA
* *
17689136 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAGTTTCC--AAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
**
17689198 TGGAAATCAAAGTTT-CAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAGTTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
17689257 TAAAAAT-AAA-TTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAATCAAAGTTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
17689315 TAAAAAT-AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAGTTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
17689373 CTACACAAGA
Statistics
Matches: 161, Mismatches: 10, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
57 3 0.02
58 54 0.34
59 91 0.57
61 1 0.01
62 12 0.07
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (60 bp):
TAAAAATCAAAGTTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17690782 original size:26 final size:26
Alignment explanation
Indices: 17690753--17690805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17690743 CCGGTTCGAT
* *
17690753 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17690779 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17690805 C
1 C
17690806 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17691705 original size:26 final size:25
Alignment explanation
Indices: 17691654--17691705 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
17691644 CTTGTTCGAT
* * *
17691654 CTTAGACTGGAATAAATTTCGTATG
1 CTTAGACTGGAATAAACTCCGCATG
*
17691679 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACT-GGAATAAACTCCGCATG
17691705 C
1 C
17691706 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGCATG
Found at i:17692560 original size:26 final size:26
Alignment explanation
Indices: 17692521--17692599 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17692511 CCGATCCGAT
*
17692521 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17692547 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17692573 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17692599 C
1 C
17692600 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17695094 original size:894 final size:884
Alignment explanation
Indices: 17690638--17696521 Score: 6463
Period size: 887 Copynumber: 6.6 Consensus size: 884
17690628 GAATCACCGA
* * *** *** *
17690638 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGCGCCC-TGACAAAG-AAAAATGCGACACC
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-GCTCCCACGACGGTGCACCGATG-GGCACC
* * * * *
17690701 AGCACATGTCAGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAA
64 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAA
* *
17690766 TGAACTTCGTATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
129 TGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * ** * ** * *
17690831 GTGGGCACTCAACCGGCCAGATGGGCGGGATGCTTAAGCCAGGGATCGACCAGGTCCCCCTCTGC
194 GCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* * * *
17690896 GTGCTATCGATCCTACTG-TAGCAACCCTC-AGTCTGATCCGATCTTAGACTGGGAATGAACTCC
258 GTGCTATCGATCCTGCTGCCA-CAACCCTCGA-TCCGATCAGATCTTAGACTGGGAATGAACTCC
* * * * *
17690959 GTATGCCTAAGCCAATCGATGAAATGAGTGGC-GGACGGGCGGCGGGCACTACGCTGACCAGAGA
321 GTATGCCTAAGCCAACCGACGAAACGA---GCAGG-C--G-GGCGGGCACTACGCCGGCCAGAGA
*
17691023 GACGGGATGCGTAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
379 GACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
17691088 ACGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTT-A--CTTCACGTGAAG
444 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * * *
17691150 TTTCATTTCAAGACGACTCTTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCATA-AT
509 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCA-AGAT
* * *
17691214 TTTTTTAAAA-TTTTTCGGAAGGAGCTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTT
573 TTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTT
* * *
17691278 TTTGGCATGCACAAAAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAA
637 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
17691343 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTC
702 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
17691408 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACC
767 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
17691473 AGCACACATCGCACATCATGTGCGCACACACCCCCCCGGCACCCCCGATCGTCGG
832 AGCACCCATCGCACATCATGTGCG--CACACCCCCCCGGCCCCCCCGATCGTCGG
* * * * * *
17691528 AACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCAATGATGGTGCCCCGATGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCACGACGGTGCACCGATG--G-----
** *
17691593 TTTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTTGTTCGATCTTA
59 ----GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTA
* * * * * *
17691658 GACT-GGAATAAATTTCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGA
120 GACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
17691722 AACGAGCGTGCGGACGCTCAGCC-GCCAGAGGGACGGGATGCGCAAGTCGGGGATCGATCAGGTC
185 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-CGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* *
17691786 CCCCTCTACGTGCTATCGATCTTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAAT
249 CCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAAT
** * * * * *
17691851 GAACTTGGTATGCCT--------------TA-GA-C---TGGGTGGGCACTACGTCGACCAGAGA
314 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGA
*
17691897 GACGGGATGCGCAAGCCGTGAATCGATAAGGTGGTTAGGTGGGGTTTAGGCACATCTTCATA-TT
379 GACGGGATGCGCAAGCCGTGAATCGATAGGGTGG-TAGGT-GGGTTTAGGCACATCTTCATATTT
17691961 -TACGTGGCCAATG-CATTTTTATGGCTTGT-AATTCATACAATGGTCCC-TAAGCCTTCACGTG
442 CTACGT-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-
* * *
17692022 GAA-TTTCA--GCAAGACGACTCGTTTTTGTATTTTTCACAATTTTTCAAAAACTTTTTTGCGGT
505 GAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTT--AAAAC-TTTTTACGGT
* ** * *
17692084 TCCAGATTTTTTTCAAATTTTTTCGGAAAGAGTTTTTGGCCCCAAAACTGGTAGACATG-TCCTT
566 TCAAGATTTTTTAAAAATTTTTTCGGAAGGAG-TTTTGGCCCC-AAACTGGTAGACGTGATCC-T
* * * *
17692148 TTTATTTTTTTTTTTTGCAATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
628 TGTA---TTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * *
17692213 TGGACCATTTGAAAAGAGTGT-CCC-TATTCGACACTATAGTGGCTACTGGCAGCAAACCTGTAA
689 T-GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
17692276 AATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
753 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
17692341 AAGGGCCAAGTACCAGCACCCCTCGCACACCACATGTG-G-ACACCCCCCCGG--ACCCCTATCG
818 AAGGGCCAAGTACCAGCACCCATCGCACA--TCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
17692402 TCGG
881 TCGG
* * * * *** ***
17692406 AACCCCAATGTCGTCGGTCAGGTTGTCCGACGATGGTGCCC-CGACAAAG-AAAAATGGGTCACC
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CCCACGACGGTGCACCGATGGG-CACC
* *
17692469 AGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
64 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CG----G----T---CT-GG--
*
17692534 TGAACTCTGTATGCTTAGACTGAGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATG
110 T----TC-G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATG
* * * *
17692599 CCTAAGTCAACCCACGAAACGAGGGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCACAAGC
168 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGC
* ** ** * * * * *
17692664 TGGGGATCAATCGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTGCCACAACCTTTGGTCCGATCC
232 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGAT-C
* *
17692729 A-ATCTTAGACGGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCAGG
296 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--A--GGCGGG
* * * * *
17692793 CGGGCACTACACCGGCCAGAGAGACGGGCTGCGCAA-CTCATGAATCGATAGGGTGATAGGTGTG
357 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CGTGAATCGATAGGGTGGTAGGTGGG
* ** * * *
17692857 TTTAGGCACATCTTCTTATTTCCGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCGTACAATG
421 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
17692922 GTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
486 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
17692986 AAAACTTTTTACGGTTCAGGATTTTTTAAAAAGTTTTT-AGAAGGA-TTTTTGCCCCAAACTGGT
551 AAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTGGT
* * * *
17693049 GGATGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
616 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17693114 AGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAA
681 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
17693179 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
746 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * ** *
17693244 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCACGTATGGACACCCCCCCCGGCCCCCC
811 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCC
*
17693309 CGATCGTCAG
875 CGATCGTCGG
* * * * * ***
17693319 AACCCCAATGTCGCCGGTCAGGTTGTCCGACGATGGTGCCCA-G-GGGAAG-AAAAATGGGTCAC
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CCCACGACGG-TGCACCGATGGG-CAC
* * * * *
17693381 CAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGA
63 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGA
* * * * * * *
17693446 ATGAATTCCATATGCTTAGACCGAGAATGAACTCTGTATGCCTATGTCAACCCACGAAACGTGGG
128 ATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* *
17693511 TGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTG
193 TGCGGGCGCTCAGCCGGCCAGAGG-GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA
* * * * * *
17693576 CGTGCTACCGATCCTGCTGCTAAAACCTTTGGTCCGATCCA-ATCTTAGA-TGGGGAATGAACTC
257 CGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGAT-CAGATCTTAGACT-GGGAATGAACTC
* **
17693639 CGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGAGCGGGCACTAAACCGGCCAGAGAGA
320 CGTATGCCTAAGCCAACCGACGAAACGAGC--A--GGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
17693704 CGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGTGTTTACGCACATCTTCATATTTCTGC
381 CGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
17693769 ATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
446 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
17693834 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTT
511 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTT
** *
17693899 TTAAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTGGTAGACGTGATCCTTGTATTTTTGTTG
576 TTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
17693964 GCATGCATAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
641 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
17694029 TGTCCCCATTTTAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTA
706 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
17694094 A-GGGGTGTTGAGCCTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
771 AGGGGGTG-TGAG--TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
17694158 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT-GTCGG
833 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
* * *
17694209 AACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGATGCTCCCGATGACGGTGCTCCGATGCCGCAC
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCC-ACGACGGTGCACCGATG-GGCAC
* * * * *
17694273 CAGCACTTGCCTGAGCCCAGCATGTGCTGCCGC-ATCCTCGGTCTGGTTTGATCTTAGACTGGTA
63 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGA
* *
17694337 ATGAACTCCGTTTGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
128 ATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
17694402 TGCGGGTGCTCAGTC-GCCTAGACGGGCGGGATGCG-AAACCGGGGATTGG-CTGGGTCCCCCTC
193 TGCGGGCGCTCAGCCGGCC-AGA-GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTC
* *
17694464 TACGTGCTA-CTGATCCTGCTGCCGCAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAACT
255 TACGTGCTATC-GATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACT
* * *
17694528 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTAGGCGGGCTGGCACTACGTCAGCCAG
319 CCGTATGCCTAAGCCAACCGACGAAACGA----GC----AGGCGGGCGGGCACTACGCCGGCCAG
* * * *
17694593 AGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATT
376 AGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
17694658 TCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTG
441 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * ** **
17694723 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTTTGGTTCGGG
506 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAG
*
17694788 A-TTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
571 ATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGTATTT
*
17694852 TTGTTGGCATACACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
635 TTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
17694917 AAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACCGGCAGCAAACCTGTAAAATCTCAAATG
699 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
17694982 CTCTTTAAGGGGGTGTGAGTTCTCGAGCCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
764 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
17695047 ACAAGCACCCATCGCACATCATGCGCGCACACACCCCTCGACCCCCCCGATCGCCGG
829 ACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGG
** * * * * * * *
17695104 AATGCCAATGCCGTCGGTTAGCTTCTACGGCGATGCTCCGACGATGGTGC-CTCGATGAAGAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCACGACGGTGCAC-CGAT---G----
** * * *
17695168 ATACGGCACCAGCACATGCTTGTGCCCAGGATGTGCTGCCGCAACCCTCGGTCT-GATCTGATCT
58 ----GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC-GATCT
* *
17695232 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
118 TAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
17695297 GAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGTGGGATGCGTAAGCTGGGGATCGGTCGGGT
183 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * ** * * * *
17695362 CCCCATCCACGTGCTGTCGATCCTGCTGTCTTAACCCTCGATCTGGTCCGATCTTAGATTGGGAA
248 CCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAA
* *
17695427 TGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
313 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
17695492 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATAGTTC
378 AGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
** * *
17695557 TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCCTCACGTGAA
443 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * * * *
17695622 GTTTAATGGCAAGCCGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTT-GGGTTCCAGAT
508 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGAT
* * * *
17695686 TTTTT-TAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTCTTTTT
573 TTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTT
* * *
17695750 GTTGGCATGCAAAAAAAAAATTCAGCTAAACATTCGAAGTGTACAAGATTTTGTGACCATTTGAA
637 GTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
17695815 AAAAGTGTCCCCATTTTAGACACTTTAATGGTTACT-GCAGTAAACCTGTAAAATCTCAAATGCT
701 AAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
17695879 CTTTAA-GGGGTGTGAGTTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAGGTA
766 CTTTAAGGGGGTGTGAG-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
17695943 CTAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGTCCCCCCGATCGCCGG
830 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
* * * * * *
17695997 AACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATCCTCCGACGATGGTGCCTCGGCGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCACGACGGTG-CAC--C---G----A
* * * *
17696062 TGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGT-TCGGTCCGATCTT
56 TG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTTCGATCTT
* ** *
17696126 AGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCGGTATG-CT---T---------
119 AGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** ** * * *
17696178 --A-GA-C-T---GG-G---A--ATG--A-A-CTCCGTATGCGTAAGCCGGGGATCGGTCGGGTC
184 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
** * * * * * * *
17696225 CCCCTCTGTGTGCTGTCGATTCGGCTCCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
249 CCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAAT
* * * *
17696290 GAACTCTGTATGCCTAAGCTAACCAACGAAAAGAGCGGGCGGGCGGACGGACGGGCGGGCACTAC
314 GAACTCCGTATGCCTAAGCCAACCGACG--AA-A-----CGAGC--A-GG-CGGGCGGGCACTAC
* *
17696355 GCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
367 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
17696420 CTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGC
432 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
17696485 CTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTC
497 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
17696522 CTTGTATTTT
Statistics
Matches: 4336, Mismatches: 469, Indels: 394
0.83 0.09 0.08
Matches are distributed among these distances:
862 105 0.02
863 1 0.00
864 3 0.00
865 1 0.00
866 2 0.00
867 36 0.01
868 3 0.00
869 1 0.00
870 4 0.00
871 2 0.00
872 5 0.00
873 31 0.01
874 260 0.06
875 29 0.01
876 31 0.01
877 27 0.01
878 65 0.01
879 24 0.01
880 18 0.00
882 134 0.03
883 50 0.01
884 27 0.01
885 1 0.00
886 3 0.00
887 363 0.08
888 79 0.02
889 26 0.01
890 348 0.08
891 133 0.03
892 116 0.03
893 272 0.06
894 351 0.08
895 358 0.08
896 166 0.04
897 200 0.05
898 3 0.00
899 101 0.02
900 78 0.02
901 60 0.01
903 2 0.00
904 48 0.01
905 204 0.05
906 5 0.00
908 23 0.01
909 51 0.01
910 140 0.03
911 11 0.00
912 2 0.00
913 116 0.03
914 12 0.00
916 24 0.01
917 42 0.01
918 70 0.02
919 24 0.01
920 32 0.01
921 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCACGACGGTGCACCGATGGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG
CTATCGATCCTGCTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
Found at i:17695266 original size:26 final size:26
Alignment explanation
Indices: 17695230--17695282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17695220 CTGATCTGAT
*
17695230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17695256 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17695282 C
1 C
17695283 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17696152 original size:26 final size:26
Alignment explanation
Indices: 17696123--17696201 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17696113 TCGGTCCGAT
17696123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
17696149 CTTAAACTAGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17696175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17696201 C
1 C
17696202 GTAAGCCGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17697820 original size:26 final size:26
Alignment explanation
Indices: 17697791--17697840 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17697781 TTGGTCCGAT
* *
17697791 CTTAGATTGGGAATGAATTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17697817 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17697841 TGTCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17699621 original size:26 final size:26
Alignment explanation
Indices: 17699585--17699634 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17699575 TGGTCCAATT
17699585 TTAGACTGGGAATGAACTCCGTATTC
1 TTAGACTGGGAATGAACTCCGTATTC
17699611 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17699635 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTC
Found at i:17700347 original size:898 final size:900
Alignment explanation
Indices: 17696520--17702217 Score: 6938
Period size: 888 Copynumber: 6.5 Consensus size: 900
17696510 CGACTCGTTT
* *
17696520 TCCTTGTA-TTTT-TTGGCGTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATG-TTTT
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA-GATTTT
* *
17696582 GTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
65 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
17696647 AATCTCACATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATAT
130 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
17696711 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCCGGCCCCCCCGATCGC
195 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGC
* * * * * *
17696776 CGGAAGCCCAACGCCGCCAGTCAGGTTCTCCGATGATGCT-CTGACGATGGTGCCCTGACGAAGA
258 CGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACG-TGCTCCTG-CGATGGTGCCCCGACGAAGA
* * * ** *
17696840 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CCTCGATCCATTCCAAT
321 AAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
17696904 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
386 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
17696969 ACGAAACGAGCATAC-GGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGGTCGGTCG
451 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * * * * *
17697033 AGTCCCCCTTTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTAAACTGG
516 GGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAGT-CGGTCCGATCTTAGACTAG
* * * *
17697098 GAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCA---GGCACAACG
580 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGCACTACG
* * * ** * * *
17697160 TCGGGCAGAGAGACAGGATACGCAAGCCACGGATCGATAGGGTGTTAGGTTGCTTTAGGCACATC
645 CCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
17697225 TTCATATTT-T-TGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAG
710 TTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
17697288 CCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTATTTTTAATGATTTTTTAAACTTTTT
773 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* ** * *
17697353 ATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCTTAGACCTTA
838 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
17697416 TCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAGTTGAAGTGTACGAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *** *
17697481 TAACCATTTGAAAAAAGTGTAAACATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
17697546 ATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGAATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
17697611 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCG
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCG
* *
17697676 AAACCCCAATGCCGCTGGTCAGGTTCT-C--CG-G----T--GATGGTGCCCCGATGAAGAAAAA
260 AAACCCCAATGCCGCCGGTCAGGTTCTCCGACGTGCTCCTGCGATGGTGCCCCGACGAAGAAAAA
*** * * *
17697731 TGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGT-TGGTCCGATCTTA
325 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * *
17697795 GATTGGGAATGAATTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGA
390 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
17697860 AACGAGCGTGCGGGCGTTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
455 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * *
17697925 CCCCTCTACGTGTTGTCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAAT
520 CCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAG-TCGGTCCGATCTTAGACTAGGAAT
* * * * *
17697990 GAATTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCGGGCGGG--TG-GGCACTACGCCGG
584 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGCACTACGCCGG
* *
17698052 CCAGAGAGACGGGATACGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCA
649 CCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
17698117 TATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCA
714 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
17698182 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTT
779 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * *
17698247 GGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
844 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
17698304 TCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCCAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17698369 TGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * * *
17698434 ATCTCAAATGCTTTTTAAGGGGCTGTGAGTTTTCAAGGTTTGATTAGGAATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
17698499 AGGGCCAAGTACCATCACCCATCGCACATCATGTGTGCACA-CCCCCGG--CCCCCGATCGCCGA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
* * * ** *
17698561 AACCCCAATTCCGCCGGTCAGGTTCTCCG--GTGACGTTCCGGTGATGGTGCCTTGGCGAAGAAA
261 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGTG-C--TCCTGCGATGGTGCCCCGACGAAGAAA
* * *
17698624 AATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCT
323 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * * * *
17698689 TAGATTGGGAATGAACTCCGTAAGCCTAGACTCGGAATGAACTCCGTATGTCTAAGTCAACCCAC
388 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
17698754 GAAATGAGTGTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCGCAAGCCGAGGATC-GACCGG
453 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * ** * *
17698818 TCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTC-GATCCGGTCTGATCTTAGACTGGG
518 TCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAG-T-CGGTCCGATCTTAGACTAGG
* *
17698882 AATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGC-G--CTACGC
581 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGCACTACGC
* * * *
17698944 CAGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
646 CGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
**
17699009 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
711 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17699074 TCACGTGAAGTTTCATGACAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
776 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * **
17699139 GTTC-AGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC-AACTTGGTAGACAAGA
841 GTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
17699198 TCCTTGTATTTTT-TTGAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
1 TCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
17699262 GTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
65 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
17699327 AATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATAT
130 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
17699392 AAGGGCCAAGTACCAGAACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
195 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
* * *
17699457 AAACCCCAATGCCGTCGGTCATGTTC-CCTGACGATGCTCCTGCGATGGTGCCCCGATGAAGAAA
260 AAACCCCAATGCCGCCGGTCAGGTTCTCC-GACG-TGCTCCTGCGATGGTGCCCCGACGAAGAAA
* * * * * *
17699521 AGTATGGCACCAGCACAT-CCCTAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCAATT
323 AATATGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
17699585 TTAGACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
387 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
17699650 TGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
452 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
** * *
17699715 GTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCC-C-G-CGGTCCAATCTTAGACTAGGA
517 GTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAGTCGGTCCGATCTTAGACTAGGA
* * *
17699777 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCAGGCGGGCACTACGT
582 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGC-GGCACTACGC
* * * * *
17699842 AGGCCAGAGAGACAGGATGCGTAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCT
646 CGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17699907 TCATATTTCTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
711 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17699972 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTCCA
776 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
17700037 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTAGCCCCAAACATGGTAGATGTGA
841 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
17700097 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * ** *
17700162 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGGTTGTAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
17700227 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
17700292 AGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCACCGG
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
*
17700356 AA-CCCATATACCGCCGGTCAGGTTCT-C--C--G-----GCGATGGTGCCCCGACGAAGAAAAA
261 AACCCCA-ATGCCGCCGGTCAGGTTCTCCGACGTGCTCCTGCGATGGTGCCCCGACGAAGAAAAA
* ** * * *
17700410 -ATGCGACACCAGCACATCCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGATCCGATCTGATCT
325 TATG-G-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
** * *
17700474 TAGACTTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
388 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * *
17700539 GAAACGAGCGTGCGGGCACTCAGCAAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGG
453 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * * ** *
17700604 TCCCCCTCTGCATGCTGCCAATGCTACTACCGCAGCCCTCAGTCCTATCCGATCTTAAACTAGGA
518 TCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAGT-CGGTCCGATCTTAGACTAGGA
* * ** **
17700669 ATGAACTCTGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCATGCGGGTGGGCAGGCACTACGC
582 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGC-GGCACTACGC
* * *
17700734 CGGTCAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCT
646 CGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * *
17700799 TCATATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCT
711 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17700864 TCACGTGAAG-TTCAATGGCAAGATGACTCGTTTTCTATTTTTCACGGTTTTTGAAACTTTTTAC
776 TCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * ** ** * *
17700928 GGTTC-AGGATTTTCTAAAGTTTTTTCGGAAATAGTTTTGATCCCAAACTTGCTAGATGTGA
840 GGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
17700989 TCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
1 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17701054 TGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
66 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
** * *
17701119 ATCTCAAATGCTCTTTAAGTTGGTGTGATTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATA
131 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
17701184 AGGGACAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCGATCG-CTA
196 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
* * * *
17701248 GAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTACGATGGTGCCCCGATGAAGAAAA
261 -AACCCCAATGCCGCCGGTCAGGTTCTCCGACG-TGCTCCTGCGATGGTGCCCCGACGAAGAAAA
** * * * * * *
17701313 ATGCGGCACCAGCACATGCTCGAGCCCAGTATGTACTGTCGCAACCCTTGGTCCTGTCCGATCTT
324 ATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * *
17701378 TGACTGGGAATGACCTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATG
389 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
17701443 AAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGTAAGCCGAGGATCGATCGGGT
454 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * *
17701508 CCCCCTCTACATGCTACCGATCCTACCACCACAACTCTC-GATCCGGTCCGATCTTAGACTAGGA
519 CCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAG-T-CGGTCCGATCTTAGACTAGGA
** * *
17701572 ATGAACTATGTATGCCTAAGCCAACCGACGAAACGA--GGAC-GG-GGGC-GG-GGCACTA-TCC
582 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGCACTACGCC
* * * **
17701630 TGCTAGAGA-A-GCTGACGCGCAAGCC--GGA-C-AT---GT-G-A-------TTA--CAC-TCT
647 GGCCAGAGAGACG-GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17701674 TCA-ATTTC--TGAGCGCAATGCCA-TTTTATGGCTTGTAAATT-A-ACAAT-GT--CTT-AGCC
711 TCATATTTCTATGTGC-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
17701729 -TCACGTGAA-TTTCA--GCAA-ACGACTCG--TTC-A-TTTTC---A-TTTT-AAACTTTTTTA
775 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTA
* * * * ** *
17701780 --GTT--TGATTTTTTAAAA-----ACCGAGACGA-TTTTTACCCCAAACTTGGTAGACAT-A
839 CGGTTCGAGATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * * **
17701832 T-CTTCTATTTTTGTTGCGC--GCACAAAACAA-TCAGCCTAAAAACCCGAAGTCTAC-AGGTGA
1 TCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTACAAGATTT
* * * *
17701892 TGCG-CCATTTG--AAATGTGTCCCCATTTCAGACA-TTT-ATGGCTACTGGC-GTAAACCTAT-
64 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
17701950 AAA-CTCAAAT-CTCCTTAA-GGGGTGTGAGTTCT-GAGG-TTGATGA-GGATA--GGGCCAATA
129 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
17702007 TAAGGGCCAAGGTACCAGCA-CCATCGCCACATCATGTGCGCATACCCCCCCGGCCCCCCCGATC
194 TAAGGGCCAA-GTACCAGCACCCATCG-CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * * *
17702071 GTCGGAACCCCAATGCCGCCGGTTAGGTTCT-C--C--G-----GCGATGGTGCCTCGACGAAGA
256 GCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGTGCTCCTGCGATGGTGCCCCGACGAAGA
* * * * *
17702126 AAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGACGCGA
321 AAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-CGA
*
17702190 TCTTAGACTGGGAATGAACTCCATATGC
385 TCTTAGACTGGGAATGAACTCCGTATGC
17702218 CTAAGCCAAC
Statistics
Matches: 4236, Mismatches: 481, Indels: 250
0.85 0.10 0.05
Matches are distributed among these distances:
815 4 0.00
816 93 0.02
821 1 0.00
824 1 0.00
825 24 0.01
826 25 0.01
827 45 0.01
828 8 0.00
829 4 0.00
830 11 0.00
831 7 0.00
832 7 0.00
833 3 0.00
834 8 0.00
835 12 0.00
836 3 0.00
837 20 0.00
839 7 0.00
840 10 0.00
841 26 0.01
842 14 0.00
843 4 0.00
844 23 0.01
845 2 0.00
849 10 0.00
851 3 0.00
852 4 0.00
853 10 0.00
857 5 0.00
858 1 0.00
859 3 0.00
861 7 0.00
862 4 0.00
864 1 0.00
865 12 0.00
866 4 0.00
867 2 0.00
869 2 0.00
870 5 0.00
871 1 0.00
872 20 0.00
873 8 0.00
874 5 0.00
875 6 0.00
876 3 0.00
878 3 0.00
884 38 0.01
885 3 0.00
886 12 0.00
887 163 0.04
888 796 0.19
889 6 0.00
890 6 0.00
891 5 0.00
892 523 0.12
893 34 0.01
894 315 0.07
895 412 0.10
896 145 0.03
897 232 0.05
898 485 0.11
899 297 0.07
900 6 0.00
901 3 0.00
902 1 0.00
903 248 0.06
904 24 0.01
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
AACCCCAATGCCGCCGGTCAGGTTCTCCGACGTGCTCCTGCGATGGTGCCCCGACGAAGAAAAAT
ATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
CCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCAGTCGGTCCGATCTTAGACTAGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGCACTACGCCGGCC
AGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
Found at i:17700501 original size:26 final size:26
Alignment explanation
Indices: 17700472--17700524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17700462 CCGATCTGAT
**
17700472 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17700498 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17700524 C
1 C
17700525 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17702875 original size:26 final size:26
Alignment explanation
Indices: 17702846--17702896 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702836 CGGTCCGATC
*
17702846 TTAGACAGGGAATGAACTCCGTATGG
1 TTAGACAGGAAATGAACTCCGTATGG
*
17702872 TTAGACTGGAAATGAACTCCGTATG
1 TTAGACAGGAAATGAACTCCGTATG
17702897 CCTAAATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACAGGAAATGAACTCCGTATGG
Found at i:17703784 original size:26 final size:26
Alignment explanation
Indices: 17703755--17703822 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
17703745 TTGATCTAAG
17703755 ACTGGGAATGAACTCCGTATGCTTAA
1 ACTGGGAATGAACTCCGTATGCTTAA
17703781 ACTGGGAATGAACTCCGTATGCTTAA
1 ACTGGGAATGAACTCCGTATGCTTAA
17703807 ACTGGGAATGAACTCC
1 ACTGGGAATGAACTCC
17703823 ATATTCCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCTTAA
Found at i:17703990 original size:26 final size:26
Alignment explanation
Indices: 17703961--17704013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17703951 CCGGTCCAAT
**
17703961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
17703987 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
17704013 C
1 C
17704014 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:17704096 original size:185 final size:185
Alignment explanation
Indices: 17703776--17704172 Score: 469
Period size: 185 Copynumber: 2.1 Consensus size: 185
17703766 ACTCCGTATG
* ** *
17703776 CTTAAACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCATATTCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTAAGAATGAACTCCATATGCCTAAGCCAACCC
** * * * * *
17703841 ATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCACAAGTCGGGGATCGATCG
66 ACAAAACGAGCATACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCG
* * *
17703906 GGTCCCCC-TC-TGCATGCTA-CAGATCTTGCTACCG-TAACCCTCGGTCCGGTCCAAT
131 GGTCCCCCTTCGTG--TCCTACCA-ATCTTGCT-CCGACAACCCTCAGTCCGGTCCAAT
* * * *
17703961 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACTC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTAAGAATGAACTCCATATGCCTAAGCCAACCC
* ** * * *
17704026 ACAAAACGAGCATACGGGGGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTG
66 ACAAAACGAGCATACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCG
** * * *
17704091 GGTCCCCCTTCGTGTCCTACCAATCTTGCTGTGACAACCCTCAGTCTGGTTCGAT
131 GGTCCCCCTTCGTGTCCTACCAATCTTGCTCCGACAACCCTCAGTCCGGTCCAAT
17704146 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17704173 CTAAGCCGAC
Statistics
Matches: 179, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
184 1 0.01
185 172 0.96
186 4 0.02
187 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAAACTAAGAATGAACTCCATATGCCTAAGCCAACCC
ACAAAACGAGCATACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCG
GGTCCCCCTTCGTGTCCTACCAATCTTGCTCCGACAACCCTCAGTCCGGTCCAAT
Found at i:17704276 original size:159 final size:158
Alignment explanation
Indices: 17703987--17704349 Score: 426
Period size: 159 Copynumber: 2.3 Consensus size: 158
17703977 ACTCCGTATG
** * * **
17703987 CTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACTC-ACAAAACGAGCATACGGGGGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCATACGGGCACTCAG
* ** * *
17704051 TCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTTCGTGTCCTACCAATC
65 CCAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTTCGTG-CCTACCAATC
** * *
17704116 TTGCT-GTGACAACCCTCAGTCTGGTTCGAT
129 TTGCTACCG-CAACCCTCAGTCTGGTGCAAT
* * *
17704146 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATACGGGCACTCAGC
* * * * * *
17704211 CAATCAGAGGGGTGGGATGCACCAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG-CTGCCGATC
66 CAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCT-T-CGTGCCTACCAATC
*
17704275 TTGCTACCGCAACCCTCGGTCTGGTGCAAT
129 TTGCTACCGCAACCCTCAGTCTGGTGCAAT
*
17704305 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
17704350 TGAGGCGAGC
Statistics
Matches: 173, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 166 0.96
160 2 0.01
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATACGGGCACTCAGC
CAACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTTCGTGCCTACCAATCTT
GCTACCGCAACCCTCAGTCTGGTGCAAT
Found at i:17705951 original size:26 final size:26
Alignment explanation
Indices: 17705900--17705952 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17705890 CCAGTCCGAT
** *
17705900 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTTCATATG
17705926 CTTAGACAAGGAATGAAC-TCTATATG
1 CTTAGACAAGGAATGAACTTC-ATATG
17705952 C
1 C
17705953 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTTCATATG
Found at i:17706763 original size:26 final size:26
Alignment explanation
Indices: 17706734--17706786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17706724 CTGGTCCGAT
*
17706734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17706760 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17706786 C
1 C
17706787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17707932 original size:902 final size:901
Alignment explanation
Indices: 17706182--17711116 Score: 6955
Period size: 902 Copynumber: 5.5 Consensus size: 901
17706172 CGATGGTCCC
* *
17706182 TTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
17706247 ACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCAAGATTTTTTTAAA-TTTTTC
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * * * *
17706311 TTGAAGGAGTTTTGGCCCAAAACATAGTAGACATGATCCCTGTATTTTTGTTGGTATGCACAAAA
131 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17706376 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAATAAGTGTCCCCATTTC
195 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17706441 AGACACTTTAATGGCTGCTGGTAGCATACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
260 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17706506 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
325 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** **
17706571 CATGTGTGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCTAGTCAGGTTCTCC
390 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * **
17706636 GTAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGGGGCACCAGCACATTCTAGAGCCCAG
454 G-CGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
17706701 CATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATA
518 CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
17706766 CTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCTGGCTA
583 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** * * * * *
17706831 GAGGGGCGACATGCACAAGCCGGGGATCGGCCGAGTCCCCCTCTGCATGCTACCGATCCTGCTGC
648 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGC
* * ** * * *
17706896 CGCAACCCTCGATCCGGTCCAATCTTATACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACG
713 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * **
17706961 AAACGAGTGTGCGG-GTGGACGGGCGGGCAATACGTCGGCCAGTGAGACGGGATGCGCAAGCTAT
778 AAACGAGCGGGCGGCG-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
17707025 GGATCGATAGGGTGGTAGGTTGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCAT
841 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17707086 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGAGAAGTTTCATGGCAAGATG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
17707151 ACTCGTTTTCTATTTTTCATGAATTTTCAAACTTTTTACGGTTCGAGATTTTATAAAGTTTTTTC
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17707216 GGAGGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAA
131 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
17707281 AATTCAGCTAAAAACTCGAAGTGTACAA-ATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCA
196 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17707345 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGT
261 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * * *
17707410 TCTCGAGATTTGATGAGAGACAGGGGGCGAATATAAGGGCCAAGTACTAGCACCCATCGTACATC
326 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17707475 ATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAAGTTCTCCAG
391 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G
* *
17707540 CGATGCTCTGACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
455 CGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
17707605 TGTGGTGCCGTAACCCTCGATCCAGTCCGATCTTCGGCTGGGAATGAACTCTGTATGCTTAGACT
520 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
17707670 GGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGA
585 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * * ** *
17707735 CGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTTTTGCGTGTTACCGATCATGCTATCA
650 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCG
*
17707800 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
715 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
17707865 ACGAGCGGGCGGCCAGGCGAGCGGGCACTACGCCGGTCAGAGAGACGGGATACGTAAGCCGTGGA
780 ACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
17707930 TCGATAGCGTTGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCAT
844 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
17707988 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
17708053 GCTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTCTAAAATTTTTTT
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * ** * * *
17708118 GAAAGGATTTTTGGCCAAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCACGCACAAAAA
131 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17708183 AATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATTTCA
196 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17708248 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTATGAGT
261 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17708313 TCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATC
326 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
17708378 ATGTGCGCTCACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCAGTCGGTCAGGTTCTCTGG
391 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CG
* * *
17708442 CGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
455 CGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** *
17708507 TGTGCTACCACAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAACTCC----G--TA-ACT
520 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
17708565 GGGAATCAACACTGTAT-CCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGA
585 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
17708629 GGGGCGGGATGCACAAGTCGGGGATCGATCGGGCCCCCCTCTGCGTGCCACCGATCTTGCTACCG
650 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCG
*
17708694 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
715 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** * * *
17708759 ACGAGCAGGCGGACGGGTGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCACAAGTCGTAGA
780 ACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17708824 TCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTCCTGCATGCCAATGCCAT
844 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17708882 TTTTATGGCTTGTAACTTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * * *
17708947 ACTCGTTTTCTATTTTTTACGATTTTTGATACCTTTTGCAGTTCGGGATTTTTTAAAATTTTTTT
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17709012 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGACATGCACAAAAC
131 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17709077 AATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCA
196 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
17709142 AACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
261 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
17709207 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
326 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * ** *
17709272 TTGTGAGCACACCCCCCGGCCCCCCCGATCGCCAAAACCCCAGT-CCTGCCGGTCAGGTTCTCCG
391 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-GCCGGTCAGGTTCTCCG
* * * *
17709336 ACGATGCTCCGTCGATGGTGCCTCGGCAAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGC
455 -CGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * * *
17709401 ATGTGCTACCGTAACCCTCGGTCTGATCTGATCTTAGGCTGGGAATGAACTCCATAAGCTTAGGC
519 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
17709466 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGTCGGCCAG
584 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* *
17709531 AGGGGCGGGATGCGCAA-CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCC
649 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCC
*
17709595 GCAACCCTCGGTCTGGTGC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG
714 GCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
17709659 AAACGAGC--G-GGCGGGCGGGCGGGCATTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTAG
778 AAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
17709721 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
843 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
17709780 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
17709845 ACTCGTTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17709910 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCATGTATTTTTGTTGGCATGTACAAAAA
131 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
** * *
17709975 AACGCATCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCA
196 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17710040 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGT
261 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
17710105 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
326 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
17710170 ATGTGCGCAGACCCCCCGGCTCCCCCGATCGCCGGAACCTCAATGTCGTCGATCAGGTTCTCTGG
391 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CG
* * * *
17710235 CGATGCTCCGGCGATGGTGCCCC-GAAGAAGAAAAATGCAGCACCGGCACATGCCCGAGCCCAGC
455 CGATGCTCCGACGATGGTGCCCCGGCA-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
17710299 TTGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
519 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
17710364 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAACGTGCGGGCGCTCAACCGGCTA
584 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * ** *** *
17710429 GAGGGGCGGGATGCGGAAGCCGGGGATCAACTGGGTCCCCCTCTATGTGCTGTTGATCTTACTGC
648 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGC
* * * * **
17710494 CACAACCCTCGGTCTGGTGTGATCTTATACTGGGAACGAACTCTATATGCCTAAGCCAACCGACG
713 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
17710559 AAACGAGCGGGCAGGCGGGCGGGCGGTCACTACGCCGGCCAGAGTGACAGGATGCGCAAGTCGTG
778 AAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * **
17710624 GATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCAT
842 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17710684 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACATGAAGTTTCACGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
17710749 AATCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATATTTT
66 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * *
17710813 CGGAAGGTGTTTTGGCCCCAAACTTTGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
130 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17710878 AAATTCAGCTAAAAACTC-AGAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
195 AAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17710942 CAGACACTTTAATGAG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
259 CAGACACTTTAATG-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
17711006 AGTTCTCAAGGTTTGATGAGGGATAGGCGG-CAATATAAGGGCCAAGTACCAGCACCCATCACAC
323 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
17711070 ATGATGTGCGCACACCCCCCGGCCCCTCCGATCGCCGGAACCCCAAT
388 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
17711117 CCTACCTGTA
Statistics
Matches: 3588, Mismatches: 412, Indels: 63
0.88 0.10 0.02
Matches are distributed among these distances:
894 634 0.18
895 157 0.04
896 2 0.00
897 2 0.00
898 656 0.18
899 46 0.01
900 104 0.03
901 2 0.00
902 892 0.25
903 466 0.13
904 620 0.17
905 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGC
GATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGC
AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
Found at i:17710360 original size:26 final size:26
Alignment explanation
Indices: 17710331--17710383 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17710321 CCGGTCTGAT
17710331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17710357 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17710383 C
1 C
17710384 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17711280 original size:21 final size:21
Alignment explanation
Indices: 17711256--17711382 Score: 75
Period size: 21 Copynumber: 5.8 Consensus size: 21
17711246 TGTATTTTAT
17711256 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATATGTA
*
17711277 TATTT-TTACTTATT-TATTTA
1 TATTTATTA-TTATTATATGTA
* * *
17711297 TTTATTTATTTTTGTTAATATTTA
1 --TATTTATTATTATT-ATATGTA
*
17711321 TATGTATT-TTATTTATATAGTTCTA
1 TATTTATTATTA-TTATAT-G---TA
17711346 TATTTATTATATATTATAAT-T-
1 TATTTATTAT-TATTAT-ATGTA
17711367 TATTTATTATTATTAT
1 TATTTATTATTATTAT
17711383 TTTTCTTGTA
Statistics
Matches: 85, Mismatches: 7, Indels: 29
0.70 0.06 0.24
Matches are distributed among these distances:
20 14 0.16
21 26 0.31
22 19 0.22
23 2 0.02
24 6 0.07
25 9 0.11
26 5 0.06
27 4 0.05
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (21 bp):
TATTTATTATTATTATATGTA
Done.