Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 93 of 117
Found at i:17711295 original size:4 final size:4
Alignment explanation
Indices: 17711242--17711374 Score: 53
Period size: 4 Copynumber: 32.5 Consensus size: 4
17711232 TCTTTTGTAT
* * *
17711242 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
* *
17711289 TTTA TTTA TTTA TTTA TTTT TGTTA -ATA TTTA TATGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA
* * * * *
17711336 TATA GTTC TATA TTTA TTATA TATTA -TAA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TT
17711375 ATTATTATTT
Statistics
Matches: 95, Mismatches: 20, Indels: 28
0.66 0.14 0.20
Matches are distributed among these distances:
3 13 0.14
4 62 0.65
5 15 0.16
6 4 0.04
7 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:17711332 original size:39 final size:39
Alignment explanation
Indices: 17711239--17711383 Score: 105
Period size: 39 Copynumber: 3.8 Consensus size: 39
17711229 TTTTCTTTTG
17711239 TATTTTATGTATTTTA-TTATTTATTATTATTATATGTA
1 TATTTTATGTATTTTATTTATTTATTATTATTATATGTA
*
17711277 TATTTTTACT-TA-TTTATTTATTTA-T-TTATT-TTTGTTAA
1 TA-TTTTA-TGTATTTTATTTATTTATTATTATTATATG-T-A
* *
17711315 TATTTATATGTATTTTATTTATATAGTTCTATATT-TAT-TA
1 TATTT-TATGTATTTTATTTATTTA-TTAT-TATTATATGTA
* *
17711355 TATATTA--TAATTTATTTA-TTATTATTATT
1 TATTTTATGTATTTTATTTATTTATTATTATT
17711384 TTTCTTGTAA
Statistics
Matches: 88, Mismatches: 7, Indels: 28
0.72 0.06 0.23
Matches are distributed among these distances:
34 4 0.05
35 3 0.03
36 5 0.06
37 20 0.23
38 14 0.16
39 27 0.31
40 6 0.07
41 2 0.02
42 1 0.01
43 6 0.07
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (39 bp):
TATTTTATGTATTTTATTTATTTATTATTATTATATGTA
Found at i:17711333 original size:43 final size:42
Alignment explanation
Indices: 17711237--17711363 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 42
17711227 TCTTTTCTTT
*
17711237 TGTATTTTATGTATTTTATTATTTATTATTATTATATGTATA
1 TGTATTTTATTTATTTTATTATTTATTATTATTATATGTATA
* * * *
17711279 T-TTTTACTTATTTA-TTTATTTATTTATTTTTGTTAATATTTATA
1 TGTATT--TTATTTATTTTA-TTATTTATTATTATT-ATATGTATA
*
17711323 TGTATTTTATTTATATAGTTCTATATTTATTATATATTATA
1 TGTATTTTATTTAT-T--TTAT-TATTTATTAT-TATTATA
17711364 ATTTATTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
41 3 0.05
42 5 0.08
43 26 0.40
44 9 0.14
45 4 0.06
46 1 0.02
47 14 0.22
48 3 0.05
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (42 bp):
TGTATTTTATTTATTTTATTATTTATTATTATTATATGTATA
Found at i:17711367 original size:17 final size:17
Alignment explanation
Indices: 17711328--17711384 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
17711318 TTATATGTAT
*
17711328 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATA-A
17711348 TTTATTATATATTATAA
1 TTTATTATATATTATAA
*
17711365 TTTATT-TATTATTATTA
1 TTTATTATA-TATTATAA
17711382 TTT
1 TTT
17711385 TTCTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTATTATATATTATAA
Found at i:17712422 original size:17 final size:16
Alignment explanation
Indices: 17712388--17712427 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17712378 TTAGATTAGG
*
17712388 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
17712404 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
17712421 TTTATTT
1 TTTATTT
17712428 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:17712434 original size:17 final size:17
Alignment explanation
Indices: 17712414--17712461 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
17712404 TTTATCTTAA
17712414 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
17712430 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
17712448 TTTCTATTTTTATT
1 TTT-TATTTTTATT
17712462 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:17712461 original size:14 final size:14
Alignment explanation
Indices: 17712414--17712471 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
17712404 TTTATCTTAA
17712414 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
17712426 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
17712440 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
17712455 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
17712469 TTT
1 TTT
17712472 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:17712476 original size:17 final size:17
Alignment explanation
Indices: 17712437--17712476 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
17712427 TTTGTTTTAC
*
17712437 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
17712454 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
17712468 TTTTCTTTA
1 TTTTCTTTA
17712477 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:17712576 original size:58 final size:59
Alignment explanation
Indices: 17712479--17712773 Score: 402
Period size: 58 Copynumber: 5.0 Consensus size: 59
17712469 TTTCTTTAAA
* *
17712479 TAAAAATCAAAATTTCCAAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTC-AAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
**
17712541 TAAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * * *
17712599 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
17712659 TAAAAATAAATTTCCAAAAAAA-TATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
17712717 TAAAAATAAATTTTC-AAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
17712774 CTACACAAGA
Statistics
Matches: 210, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
57 12 0.06
58 113 0.54
59 27 0.13
60 51 0.24
62 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17712637 original size:118 final size:118
Alignment explanation
Indices: 17712479--17712773 Score: 427
Period size: 118 Copynumber: 2.5 Consensus size: 118
17712469 TTTCTTTAAA
17712479 TAAAAATCAAAATTTCCAAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 TAAAAATCAAAATTT-C-AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTA
* *
17712543 AAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
63 AAAATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
17712599 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
17712664 ATAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
66 ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
17712717 TAAAAAT-AAATTTTC-AAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
17712774 CTACACAAGA
Statistics
Matches: 159, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
116 39 0.25
117 7 0.04
118 87 0.55
119 14 0.09
120 12 0.08
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (118 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:17712656 original size:28 final size:28
Alignment explanation
Indices: 17712565--17712656 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
17712555 CAAAAAAGGG
17712565 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * **
17712593 TTTCCTTG-GAAATCAAAGTTTCAAA--AAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
17712624 ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
17712653 TTTT
1 TTTT
17712657 CTTAAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 11 0.24
29 5 0.11
30 8 0.17
31 5 0.11
32 7 0.15
33 5 0.11
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:17715976 original size:26 final size:26
Alignment explanation
Indices: 17715947--17715999 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17715937 CCGGTCCGAT
17715947 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
17715973 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17715999 C
1 C
17716000 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17716876 original size:26 final size:26
Alignment explanation
Indices: 17716847--17716899 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17716837 CCGGTCCGAT
17716847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17716873 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17716899 C
1 C
17716900 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17717995 original size:904 final size:901
Alignment explanation
Indices: 17714371--17721595 Score: 9024
Period size: 903 Copynumber: 8.1 Consensus size: 901
17714361 TCTGAGTCTG
* *
17714371 ATCTTAGACTGGGAATGAACT-CGTATGCCTAAG-CAACC-A-TATAACGAAC-GGC-GGC--G-
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCAGGCGGGCGGGC
* * * * *
17714427 AGGC-GACGCTACGTCGG-CA-AGAGAC-TGATGCACAAAGCCATGGAGTCGATAGGGTGGTAGG
65 AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC-AAGCCGTGGA-TCGATAGGGTGGTAGG
*
17714488 TGGGTTTAGGCACATCTTCATATTTCTGTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATA
128 TGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17714552 CAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTT-T-TTTTTCACGA
192 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * **
17714615 ATTTTG----TTTTTGTGGTTCGAGATTTTTTAAAATTTTCTT-GAAAGGAGTTTTGGCCCCAGT
257 TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT-TTCGGAAGGAGTTTTGGCCCCAAA
* * *
17714675 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGAAG
321 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
17714740 TGTACAAGATTTTGTGACCATTTG--AAAA--------A----A-ACACTTTAATGGCTACTGGT
386 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
17714790 AGCAAACCTATAAAATATGAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATCAGGGAT
451 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
* * *
17714855 AGGGGGCCAATATAAGGGCCAAGCACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGG
516 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCC-GG
* * * * * * * *
17714920 CCCCTCCGATCATCAGAACCTCAATGCCGCCAGTCAGGTTCTCCTGCGTTGCTCCGACGGTGGTG
580 CCCCCCCGATC-GCCGAACCCCAATGCCGCCGGTCAAGTTCTCC-GCGATGCTCCGACGATGGTG
* * * * *
17714985 CCCCG-GCGAAGAAAAATGTAGCACCAGCACATGCCCGAACCTAGCATGTGCTACCGCCACCCTC
643 CCCCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* * * * *
17715049 -AGTCCGATCCAATTTTATACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTAT
708 GA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
17715113 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAG
772 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * * *
17715178 TCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCAATCCTGCTACTGCAACCCTCGGTTTGGTC
837 CCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC--CAACCCTCGGTCTGGTC
**
17715243 TG
900 CA
* * * * *
17715245 ATCTTACACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAAC--G-A-GCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
* * * *
17715306 GGCGGGCTCTACGCCGGCCAGAGAAGAC-GGATACGCAAGCCGTCGATGCGATAGGGTGGTA-GT
66 GGCGGGCACTACGTCGGCCAGAG-AGACGGGATGCGCAAGCCGTGGAT-CGATAGGGTGGTAGGT
* *
17715369 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TGTAAATTTAAAAC
129 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATAC
* *
17715433 AATGGTCCCTTAAGGCCTTCACGTTGAAGTTTCTATGGCAAGATGACTCGTTTTC--TCTTTCAC
193 AATGGTCCCTTAA-GCCTTCACG-TGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * **
17715496 GA-TTTTAAAACTTTTTGCGGCTTCAAGATTTTTTAAAATTTTTCCAAAAGGA-TTTTGGCCACC
255 GATTTTTGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CC
* *
17715559 AAA-TTGGTAGACGTTGATCCTTTGTATTTTTGTTGGCCATGGCATAAAAAAATTCAGCTTAAAA
318 AAACTTGGTAGACG-TGATCC-TTGTATTTTTGTTGG-CAT-GCACAAAAAAATTCAGCTAAAAA
* * *
17715623 CTC-AACGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTACACACTTTAATGG
379 CTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
17715687 CTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGA-TTC-TCAAGTTTGA
443 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* *
17715749 TGA-GGATA--GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTCGTACAC-C
508 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCACACAC
* * * * *
17715810 TCCCCTGG-CCCCCCGATCGTCGAACCCCAATGCTGCCGGTC-A-------G-G-TTCTCCGACG
572 CCCCCCGGCCCCCCCGATCGCCGAACCCCAATGCCGCCGGTCAAGTTCTCCGCGATGCTCCGACG
* * * * *
17715864 ATGGTGCCCCGA-CGAAGAAAAATATGGCACCAGCATAAGCCCGAGCCCAGCATGTGCTGCTGCA
637 ATGGTGCCCCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * *
17715928 ACCCTCAATCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
702 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * **
17715993 CGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGTTCAACTGGCCAGACAGGCGGGATGC
767 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * *
17716058 GCAAGTCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCAGTC
832 GCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GC-CAACCCTCGGTC
17716123 TGGTCCA
895 TGGTCCA
* * * * * **
17716130 ATCTTAGACTTGGAATGAACTCCGTATGCCTAACCCAATCCAACGAAAAGAACACCGGCGGGCAT
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCGACGAAACGAGCA--GGCGGGCGG
* * *
17716195 GCAGGCGGCCAGCACTACGTTCGGCTAGAGAGACGGAATGCACAAGCCGTGGATCGATAGGGTGG
63 GCAGGCGG---GCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
17716260 TAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTC
124 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
17716325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
189 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
17716390 TGATTTTTGAAACTTTTTGCCGTTCAAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCA
254 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
17716455 AATTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
319 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
17716520 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
384 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
**
17716585 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
449 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* * * *
17716650 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCATATACCCCACCG
514 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCG
* * * *
17716715 GCCCCCCCGATCGTCGGATCCCCAATGTCGCCGGTC-A-------G-G-TTCTCCGACGATGGTG
579 GCCCCCCCGATCG-CCGAACCCCAATGCCGCCGGTCAAGTTCTCCGCGATGCTCCGACGATGGTG
* ** * ** *
17716770 CCCCGGT-GAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATACGCTGCCGCAACCCTC
643 CCCCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
*
17716834 GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATG
708 GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
17716899 CCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGGCCAGATGGGCGGGATGCGCAAGC
773 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * *
17716964 TAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTTTGGTTC
838 CGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-C-CAACCCTCGGTCTGGTCC
17717029 A
901 A
*
17717030 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC-GAGCGGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGC
* * *
17717094 AGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
65 AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
17717159 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTTTGGCCTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
17717224 TGGTCCCTTTAGCCTGCACGTGAAGTTTTATGGCAAGTCAACTCGTTTTCTATTTTTCACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
17717289 TTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCTAAACTT
260 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTT
* *
17717354 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17717419 ACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGC
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
17717484 ATACCTGTAAAATTTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* *
17717549 GGG-CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACATCCCCCCCAGCCC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCCGGCCC
* * * * *
17717613 CCTCGATCGCCGAACACCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCTGACGATGGTGCCCT
583 CCCCGATCGCCGAACCCCAATGCCGCCGGTCAAGTTCTCCG-CGATGCTCCGACGATGGTGCCCC
* * *
17717678 GATC-AAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTT
647 GATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATC
* * * * **
17717742 CGGTCTGATTTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTTTGTATGCCTA
712 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
17717807 AGTCAACCTACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
17717872 GATCGATCGGGTTCCCCTCTGCGTGCTGCCGATCCTGCTGCCCCAACCCTCGGTCTGGTCTA
842 GATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG--CCAACCCTCGGTCTGGTCCA
* *
17717934 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
* * * * * * *
17717999 GGGGGGGATTATGTCAGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** *
17718064 CTTTAGGCACATCTTCACATTTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
17718129 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTAGTTTTAACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * *
17718194 CAAAAC-TTTTACGGTTCAAGATTTTTCT-AAATTTTTTCAGAAGGAGATTTGGCCCCAAACTTG
261 TGAAACTTTTTGCGGTTCGAGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * ** *
17718257 GTAGACGTGATCCATGTATTTTTTTTGGCTTGCACAAAAAAATTCATCTTCAAACTCAAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
17718322 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17718387 AACCTGTAAAATCTTAAATGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* * *
17718452 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCATACCCCCTCCGGCCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-CCGGCCCC
* * * * * * * *
17718517 CCCGGTTGCCGGAACACCAATGCTGCCGGTCATGTTCTCTAGCGATGCTTCGACGATGATGCCCC
584 CCCGATCGCC-GAACCCCAATGCCGCCGGTCAAGTTCTC-CGCGATGCTCCGACGATGGTGCCCC
* * * * *
17718582 GGT-GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGATC
647 GATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATC
* *
17718646 CAGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTA
712 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17718710 AGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * *
17718775 GATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGTTG------CT-GGTCCGGCCCG
842 GATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCAACCCTCGGTCTGGTCCA
*** * *
17718828 ATCTTAGACTCAAAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAAGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---A-GGCGGGCG
** * *
17718893 GGCGGACGGGCGGGCACTACGTCGGGTAGAGAGACAGGATGCGCAAGCCGTGAATCGATAGGGTG
62 GGC--A--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
17718958 GTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATT
123 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17719023 CATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCC
188 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * * * * *
17719088 ACTATTTGTGAAACTTTTTAAGTTTTGGGATTTTTTAAAGTTCTTTCGGAAGGAGTTTTGGCCCC
253 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
** *
17719153 AATTTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCG
318 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
17719218 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACT
383 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
17719283 GGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
448 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * *
17719348 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCTC
513 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-C
* * * * * *
17719413 CGGCCCCCCCGATTGCCGGAACACCAATGCTGCCGGTCATGTTCTCCAGCGATGCTTCGACAATG
577 CGGCCCCCCCGATCGCC-GAACCCCAATGCCGCCGGTCAAGTTCTCC-GCGATGCTCCGACGATG
* * ** *
17719478 ATGCCCCGGT-GAAGAAAAATGTGGCACCAGCACATGATCGAGCCCAGCATGTGCTACCGTAACC
640 GTGCCCCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
*
17719542 CTCGATCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
705 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
17719607 ATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATACGCA
770 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * *
17719672 GGCC-GGGATCGACCGGGTCCCCCTCTATGTGCTGCTGATCCTGTTG------CT-GGTCCGGCC
835 AGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCAACCCTCGGTCTGGTC
*
17719729 CG
900 CA
** * *
17719731 ATCTTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAAGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---A-GGCGGGCG
* * *
17719796 GGCGAACGGGCGGGCACTACATCGGCTAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTG
62 GGC--A--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
17719861 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
123 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
17719926 CATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
188 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
17719991 ACTATTTGTGAAACTTTTTGCGTTTCGGGATTTTTTAAAGTTTTTTCGGAAGGAGTTTTGGCCCC
253 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
** * * *
17720056 AATTTTGGAAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCG
318 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
17720121 AAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTATT
383 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
17720186 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGTGGGTCTGAGTTCTCGAGGTTTGATGAGG
448 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * * *
17720251 GATAGGGTGCAAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCT
513 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCC
* * * * * *
17720315 GGCCTCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGTCAATGG
578 GGCCCCCCCGATCG-CCGAACCCCAATGCCGCCGGTCAAGTTCTCC-GCGATGCTCCGACGATGG
* * * * * *
17720380 T-CACCG-GCGAAGAAAAAAGGGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCC
641 TGCCCCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* * *
17720443 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG-TTAGACTGGGAATGAACTCTGTA
706 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
17720507 TGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGTCGGGATGCGCAA
771 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * *
17720572 GCCGGGGATCGGCCGGGTCCCCCTCTACATGCTGCCTATCCTACTG-----CCT--GTCTGATCT
836 GCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCAACCCTCGGTCTGGTCC
*
17720630 G
901 A
* * * *
17720631 ATCTTAGACTGCGAATGAACT-CGTATGCCTAAGCCCACCGACGAAA--TG-A-GTGGGC--G--
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
* * *
17720687 GGCGGGCGCTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17720752 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
17720817 GCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
17720882 TGAAACTTTTTGCGGCTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCGCCCCAAACTTG
261 TGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
17720946 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17721010 CAAGATTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
390 CAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
17721075 AAACCTATAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
*
17721140 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCC
* * *
17721205 CCCGATCGCCGGAACCCCAATGCCGTCGGTC-AGATTCTCCGGTGATGCTCC-AGTGATGGTGCC
584 CCCGATCGCC-GAACCCCAATGCCGCCGGTCAAG-TTCTCC-GCGATGCTCCGA-CGATGGTGCC
* * *
17721268 CCGA-CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCTTCGA
645 CCGATCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGA
* * * * *
17721332 TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGGCG
710 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17721397 TAAGTCAACGCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCG
775 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * **
17721462 GGGATCGATCGGGTCCCCCTCTGCGTACTGTCGATCCTACTGTTGTAACCCTCGGTCTGGTCCA
840 GGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG--CCAACCCTCGGTCTGGTCCA
* ** * * *
17721526 ATCTTAGACTGGGAATGAACACCGTATGCCTCTGCCAACCGATGAAACAAGCGGGC-GGCGGGC-
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
17721589 GGCGGGC
66 GGCGGGC
17721596 GGGCACTACC
Statistics
Matches: 5595, Mismatches: 609, Indels: 266
0.86 0.09 0.04
Matches are distributed among these distances:
874 21 0.00
875 14 0.00
876 5 0.00
877 5 0.00
878 4 0.00
879 17 0.00
880 70 0.01
881 32 0.01
882 62 0.01
883 454 0.08
884 59 0.01
885 352 0.06
886 155 0.03
887 36 0.01
888 15 0.00
889 7 0.00
890 47 0.01
891 4 0.00
892 116 0.02
893 338 0.06
894 299 0.05
895 117 0.02
896 169 0.03
897 33 0.01
898 62 0.01
899 175 0.03
900 451 0.08
901 63 0.01
902 390 0.07
903 1273 0.23
904 717 0.13
905 33 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCC
CGATCGCCGAACCCCAATGCCGCCGGTCAAGTTCTCCGCGATGCTCCGACGATGGTGCCCCGATC
GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCAACCCTCGGTCTGGTCCA
Found at i:17718690 original size:26 final size:26
Alignment explanation
Indices: 17718654--17718706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17718644 TCCAGTCGAT
17718654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17718680 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17718706 C
1 C
17718707 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17719587 original size:26 final size:26
Alignment explanation
Indices: 17719558--17719610 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17719548 CCGGTCCGAT
17719558 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
*
17719584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
17719610 C
1 C
17719611 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:17721379 original size:26 final size:26
Alignment explanation
Indices: 17721343--17721392 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17721333 CTGATCCAAT
17721343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17721369 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17721393 GGCGTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17721927 original size:26 final size:26
Alignment explanation
Indices: 17721898--17721950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17721888 CCGGTCCAAT
*
17721898 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
*
17721924 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
17721950 C
1 C
17721951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:17722845 original size:26 final size:26
Alignment explanation
Indices: 17722796--17722846 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17722786 TGGTCTGATC
*
17722796 TTAGACTGGGAACGAACTCCGTATGA
1 TTAGACTGGGAAAGAACTCCGTATGA
* *
17722822 TTAGACTGGGAAAGAGCTCTGTATG
1 TTAGACTGGGAAAGAACTCCGTATG
17722847 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGA
Found at i:17723263 original size:368 final size:368
Alignment explanation
Indices: 17722579--17723265 Score: 1072
Period size: 368 Copynumber: 1.9 Consensus size: 368
17722569 CTCGATGTTT
*
17722579 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
1 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
*
17722644 CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCTGGTTAGGTTCTCTGGCGATGCTCCG
66 CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCG
* * * *
17722709 GCGATGGTGCCCCGACGAAGAAAAAAATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
131 ACGATGGTGCCCCGACAAAGAAAAAAATGGCACCAACACATGCCCGAGCCCAACATGTGCTGACG
* * * *
17722774 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAACGAACTCCGTATGATTAGACTGGGAAAGAGC
196 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCATATGATTAGACTGGGAAAGAAC
* * * *
17722839 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGTAGGAT
261 TCTGTACGCCTAAGTCAACCAACGAAACAAGCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGAT
17722904 GCGTAAGCCGGGGATCGGCCGGCCAGAGACACGGGATGCGCAA
326 GCGTAAGCCGGGGATCGGCCGGCCAGAGACACGGGATGCGCAA
17722947 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
1 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
*
17723012 CCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCG
66 CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCG
* ** * *
17723077 ACGATGGTGCCTCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCT-ATG
131 ACGATGGTGCCCCGACAAAGAAAAAAATGGCACCAACACATGCCCGAGCCCAACATGTGCTGACG
* * * *
17723141 ACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
196 -CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCATATGATTAGACTGGGAAAGAA
* * ** * *
17723206 CT-TCGTACGCCTAGGTCAACCAATGAAACAAGCGTGTGGGCGTTCAGCCGGCCAGAGGGG
260 CTCT-GTACGCCTAAGTCAACCAACGAAACAAGCGTACGGGCGCTCAGCCGACCAGAGGGG
17723266 CGAGTTGCGC
Statistics
Matches: 287, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
367 2 0.01
368 285 0.99
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.16
Consensus pattern (368 bp):
GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGATGCTCCG
ACGATGGTGCCCCGACAAAGAAAAAAATGGCACCAACACATGCCCGAGCCCAACATGTGCTGACG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCATATGATTAGACTGGGAAAGAAC
TCTGTACGCCTAAGTCAACCAACGAAACAAGCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGAT
GCGTAAGCCGGGGATCGGCCGGCCAGAGACACGGGATGCGCAA
Found at i:17727530 original size:26 final size:26
Alignment explanation
Indices: 17727494--17727553 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
17727484 CCTCGGTTCG
17727494 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
17727518 CTCCGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
17727544 ATCTGTATGC
1 ATCCGTATGC
17727554 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:17728545 original size:26 final size:26
Alignment explanation
Indices: 17728516--17728568 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17728506 CCGGTCTGAT
17728516 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17728542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17728568 C
1 C
17728569 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17730740 original size:26 final size:26
Alignment explanation
Indices: 17730711--17730760 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17730701 TTTTCTATTT
17730711 TTCAACATTTTTGAAAATTTTTGCGG
1 TTCAACATTTTTGAAAATTTTTGCGG
* *
17730737 TTCAAGATTTTTTAAAATTTTTGC
1 TTCAACATTTTTGAAAATTTTTGC
17730761 AAAAGGAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (26 bp):
TTCAACATTTTTGAAAATTTTTGCGG
Found at i:17732093 original size:26 final size:26
Alignment explanation
Indices: 17732055--17732107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17732045 CAGATCCGAT
* *
17732055 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17732081 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17732107 C
1 C
17732108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17732992 original size:26 final size:26
Alignment explanation
Indices: 17732954--17733006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17732944 CAGATCCGAT
* *
17732954 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17732980 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17733006 C
1 C
17733007 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17733419 original size:26 final size:26
Alignment explanation
Indices: 17733390--17733439 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17733380 TTTTCTATTT
17733390 TTCAACATTTTTGAAAATTTTTGCGG
1 TTCAACATTTTTGAAAATTTTTGCGG
** *
17733416 TTCAGGATTTTTTAAAATTTTTGC
1 TTCAACATTTTTGAAAATTTTTGC
17733440 AAAAGGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (26 bp):
TTCAACATTTTTGAAAATTTTTGCGG
Found at i:17733889 original size:26 final size:26
Alignment explanation
Indices: 17733860--17733911 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17733850 TGATCCGATA
17733860 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
17733886 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17733912 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17733923 original size:905 final size:897
Alignment explanation
Indices: 17729407--17734586 Score: 6631
Period size: 899 Copynumber: 5.8 Consensus size: 897
17729397 CAGGTCCGAT
* * * * * *
17729407 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAATGAACGTACGGGTC-CTCTG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CGCTCAG
* * * * * * ** * *
17729471 CCAGTCGGAGGGGTGGGATGCGCAAGCCGGGGATCAGTTGGGTCCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTACGTGCTATCGATG
* * * * * * * *
17729536 CTGCTGCTGTAACACTCGATCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCA
130 CTTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * **
17729601 ACCGACGAAACGAGAGGGCGGGCGGATGGGCGGGCACTACGCCGGCCA-AGAGACGACATGCGCA
195 ACCGA-GAAAC-A-A--GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
17729665 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
255 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
* * * * *
17729730 ATTTTTGTGGCTTGTAAGTTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
* *
17729795 CGACTCGTTTTTTATTTTTC-ACGA-TTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATT
385 CGACTCGTTTTCTATTTTTCAAC-ATTTTTGAAAA-TTTTTACGGTTCAG-GATTTTTTAAAATT
** * * * * *
17729857 TTTTCAGATGGAGTTTTGTCCCCAAACCTGCTAGAGGTGATCCCTT-TATTTTTTTTGGCATGCA
447 TTTTCA-AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTCTTGGCATGCA
*
17729921 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
510 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * *
17729986 ATTTAAGACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
575 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGT
*
17730051 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACA-GGCCAAGTACCAGCAA-CCAT
640 GTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAG-AACCCAT
* * * * * ** *
17730114 CGCACATCCTTTGCGCACACCCCCCCCGGCCACCCCGATCAGC-GAAACC-CTAATGCCGTCAGG
703 CGCACATCATGTGTGCACA--CCCCCTGGCCCCCCCGATCCTCAG-AACCAC-AATGCCG-CCGG
* * * * ** * * ** * *
17730177 -CAAGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAACGCAGCATCAGCACATG
763 TCAGGTTCTCCGATGATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATG
* * * * * * * * *
17730241 CCCAAGCCCAGCATGTGCT-GCGTAACCCTTGGTCCA-ATCCGATCATAGACCGAGAATGAAGTC
828 CCCGAGCCTAGCATGTGCTACCGTAACCCTCGGT-CAGATCCGATCTTAGACTGGGAATGAACTT
*
17730304 CGCATG
892 CGTATG
* * * *
17730310 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAATCCACG-AACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *** ** * *
17730374 CGACCAGAGGGGTGGGATGCACAAGCCAGGGATCAGTC-GGGTCCCTCTCTGTTTGCTGCCAATC
66 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATC-GGCGGGGTCCCCCTCTACGTGCTATCGATG
* * * * *
17730438 CTGCTACCGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** *
17730503 ACAGACGAAACGAGTGAGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGTC
195 ACCGA-GAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* **
17730568 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATTTCATTT
259 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
* * *
17730633 TTATGGCTTGTAAATTCATACAATGGTTCCTTAAGACTTCACGTGAAGTTTAATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC
* * *
17730698 TCGTTTTCTATTTTTCAACATTTTTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTGCAA
389 TCGTTTTCTATTTTTCAACATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAA
* ** *
17730763 AAGGAGTTTTGGGCCCAAACTTGGTAGATTTGATCCTTGTATTTTTCTTGGCATTCACAAAAAAA
454 AA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
* * * *
17730828 ATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
17730893 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTC
* * *
17730958 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCAT
648 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCAT
* * * * * * * * * *
17731023 GTGCGGACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGTG
713 GTGTGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCCGATG
* * * * ** * *
17731088 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAACGCATGCCTGAGCCCAGCATG
778 ATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCTAGCATG
* *
17731153 TTCTGCCGTAA-CC-C--TC-G----G-TC-----C--GG--T---C--CG-AT-
843 TGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
* *
17731182 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGATCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * **
17731247 TGGCCATAGGGGCA-GGATACGTAAGCCGAGGTTCGGTC-GGGTCCCCCTCTGCATACTGCCGAT
66 CGGCCAGAGGGG-AGGGATGCGTAAGCCGGGGATCGG-CGGGGTCCCCCTCTACGTGCTATCGAT
* * * * ** *
17731310 -CTTGCTACCGTAACCCTCGGTTTGGTTTGACCTTAGAGAGGGAATGAACTCCGTATGCCAAAGC
129 GCTT-CTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
17731374 CAACCGATGAAACAAGCGGGCGGGCGGCCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAG
193 CAACCGA-GAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
17731439 CTGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
257 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
* * * *
17731504 TTTTATGGCTTGTAAATTCAAACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
** * * * * *
17731569 ACTCGTTTTCTATTTTTCATGATTTTCGAAACA-TTTTACGATTCGGGACTTTTTAAACTTTTTT
387 ACTCGTTTTCTATTTTTCAACATTTTTGAAA-ATTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* *
17731633 CGAAAAGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
451 C-AAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
*
17731698 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17731763 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTGTGAG
17731828 TTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACAT
645 TTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACAT
17731893 CATGTGTGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCCG
710 CATGTGTGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCCG
17731958 ATGATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCTAGC
775 ATGATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCTAGC
17732023 ATGTGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
840 ATGTGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
* *
17732081 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17732146 CGACCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTATGTGCTATCGATGC
66 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTACGTGCTATCGATGC
*
17732211 TTCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17732276 CTGAGGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGTAAGCCG
196 CCGA-GAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
17732341 TGGATCGA-AAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
260 TGGATCGATAA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
* *
17732405 TTATGGCTTGTAAATTCATACAATGATTCCTTAAGCCTTCACGTGAAGTTTCAA-GTCAAGACGA
324 TTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTT-AATGGCAAGACGA
* *
17732469 CTCGTTTTCTATTTTTC-ACGA-TTTTCAAAACTTTTTACGGTTCAGGATTTTTGAAAATTTTTT
388 CTCGTTTTCTATTTTTCAAC-ATTTTTGAAAA-TTTTTACGGTTCAGGATTTTTTAAAATTTTTT
** * * *
17732532 CAGAAAGAGAATTGGCCCCTAAACTTGGTAGAAGTGATCCTTGTATATTTGTTGGCATGCACAAA
451 CA-AAAGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAA
*
17732597 AAAATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17732662 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTGTGA
17732727 GTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACA
644 GTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACA
17732792 TCATGTGTGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCC
709 TCATGTGTGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCC
17732857 GATGATGGTCCGGCGATGGTCCCCCGACGAAG-AAAATGTGGCACCAGCAAATGCCCGAGCCTAG
774 GATGATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCTAG
17732921 CATGTGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
839 CATGTGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
* *
17732980 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
17733045 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTATGTGCTATCGATGC
66 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTACGTGCTATCGATGC
*
17733110 TTCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17733175 CGGACGAAACAAGCGGGCGGGCGGGCAGGCTGACGGGCACTACGTCGACCAGAGAGACGGGATGT
196 CCGA-GAAACAA----GCGGGCGGGC-GG--G-CGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
17733240 GCAAGTCGGGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
252 GCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
* * *
17733305 GCCATTTTTATGGCTTGTAAATTCATAGAATGGTTCCTTAAGCCTTCACGTGAAGTTTAATGGCA
317 GCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCA
*
17733370 AGACGACTCGTTTTCTATTTTTCAACATTTTTGAAAATTTTTGCGGTTCAGGATTTTTTAAAATT
382 AGACGACTCGTTTTCTATTTTTCAACATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATT
* *
17733435 TTTGCAAAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
447 TTTTCAAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
* * *
17733500 AAAAAAA-TCAGCTAAAAAATCAAAGCGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
17733564 TTTTAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTG
* * * * * * *
17733629 TGAGTTCGGGAGGTTTGCTGAGGGATAGGGTGCCAATATAAGGGCCTAGAACCAGCACCCATCGG
641 TGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGC
* * * *
17733694 ACATCATGTGTGCACACCCCCCGG-CCCCCCGATCAC-CGGAA-CACCAACGCCGTCGGTCAGGT
706 ACATCATGTGTGCACACCCCCTGGCCCCCCCGATC-CTCAGAACCA-CAATGCCGCCGGTCAGGT
* * * * * * * *
17733756 TCTCCGACGATGCTCTGACGATGGTGCCTCGACGGAGAAAAATGTGGCACCAGCACATGCCCGAG
769 TCTCCGATGATGGTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAG
* * * * * * * *
17733821 CCCAGTATGTGCTGCAGCAACCCTCGGTCTGATCCGATATTAGACTGGGAATGAACTCCGTATG
834 CCTAGCATGTGCTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
17733885 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
17733950 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGCCGGGTCTCCCTCTGCGTCCTGTCAATCC
66 CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTACGTGCTATCGATGC
* * * * **
17734015 TGCTGCCGCAACCCTCGATTTGGTCTGACCCTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 TTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17734080 CCGATAGAACAAACGGGCGGGCGGGAGGGCACTACGTCGGCCAGAGAGACGGGAGGCGCAACCCG
196 CCGAGA-AACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
17734145 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATTTCATTTT
260 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* *
17734210 TATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACT
* ** * *
17734274 CGTTTTCTAATTTTCAGGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGAA
390 CGTTTTCTATTTTTCAACATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AA
** * *
17734338 CGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAA-
454 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
*
17734402 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
519 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* ** *
17734467 ACTTTAATTGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTTTGTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCT
* * * ** *
17734532 CGAGGTTTGATGAGAGATAAGGGGAAAATATAAGGGCCAAGTACCAGCACCCATC
649 GGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATC
17734587 ACATATTAGA
Statistics
Matches: 3810, Mismatches: 392, Indels: 158
0.87 0.09 0.04
Matches are distributed among these distances:
872 43 0.01
873 708 0.19
874 9 0.00
875 1 0.00
877 2 0.00
878 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 3 0.00
888 3 0.00
889 1 0.00
890 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 242 0.06
896 91 0.02
897 209 0.05
898 52 0.01
899 1102 0.29
900 350 0.09
901 9 0.00
902 131 0.03
903 51 0.01
904 63 0.02
905 457 0.12
906 52 0.01
907 210 0.06
908 12 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGAGGGATGCGTAAGCCGGGGATCGGCGGGGTCCCCCTCTACGTGCTATCGATGC
TTCTACCGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGAGAAACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTC
GTTTTCTATTTTTCAACATTTTTGAAAATTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAA
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTGG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTG
TGCACACCCCCTGGCCCCCCCGATCCTCAGAACCACAATGCCGCCGGTCAGGTTCTCCGATGATG
GTCCGGCGATGGTCCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCTAGCATGTGC
TACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:17734629 original size:26 final size:26
Alignment explanation
Indices: 17734592--17734641 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17734582 CCATCACATA
17734592 TTAGACCTGGAATGAACTCCGTATGC
1 TTAGACCTGGAATGAACTCCGTATGC
17734618 TTAGA-CTGGGAATGAACTCCGTAT
1 TTAGACCT-GGAATGAACTCCGTAT
17734642 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACCTGGAATGAACTCCGTATGC
Found at i:17735268 original size:738 final size:732
Alignment explanation
Indices: 17733857--17735324 Score: 2172
Period size: 738 Copynumber: 2.0 Consensus size: 732
17733847 GTCTGATCCG
* * *
17733857 ATATTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAC
* ** * * *
17733922 CCACGAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGC
66 CCACGAAACAAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGC
* * * * ** *
17733987 CGGGTCTCCCTCTGCGTCCTGTCAATCCTGCTGCCGCAACCCTCGATTTGGTCTGACCCTAGACT
131 CGGGTCTCCCTCTGCGTCATGCCAATCCTACTACCGCAACCCTCGATCCGATCTGACCCTAGACT
*** * *
17734052 GGGAATGAACTTTGTATGCCTAAGCCAACCGATAGAACAAACGGGCGGGCGGGAGGGCACTACGT
196 GGGAATGAACTCCATATGCCTAAGCCAACCGAGAGAACAAACGGGCGGGCGGGAGGGCACTACGC
*
17734117 CGGCCAGAGAGACGGGAGGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
261 CGGCCAGAGAGACGAGAGGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ** ***
17734182 TCATATTTTTGTGTGCCAATTTCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCTT
326 TCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCTT
* *
17734247 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCAGGATTTTTGAAACTTTTTACGG
391 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCAGGATTTTCGAAACCTTTTACGG
** *
17734312 TTCGGGATTTTTAAAATTTTTTCGAACGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGT
456 TTCGGGATTTTTAAAATTTTTTCGAACGGAGTTTTGACCCCAAACATGGTAGACGTGATCCTTGT
* *
17734377 ATTTTTCTTGGCATGCATAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
521 ATTTTTCTTGGCATGCACAAAAAAATCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
17734442 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGCAAAATCTCAAA
586 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAA
17734507 TGCTTTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGA-AAATATAAGGGCCA
651 TGCTTTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT-AGGGGACAAATATAAGGGCCA
17734571 AGTACCAGCACCCATCAC
715 AGTACCAGCACCCATCAC
17734589 ATATTAGACCT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
1 ATATTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
* * *
17734653 CCCACGAAACAAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGATGATCGG
65 CCCACGAAACAAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGG
* * * * * * *
17734718 CCGGGTC-CCCTCTGCGTGATGCCGATCCTACTATCGTAACCCTCGGTCCGATCTGATCTTAGAC
130 CCGGGTCTCCCTCTGCGTCATGCCAATCCTACTACCGCAACCCTCGATCCGATCTGACCCTAGAC
* *
17734782 TGGGAATGAACTCCATATGCCTAAGCCAACCGACGA-AACAAGCGGGCGGGCGAGCGGGCGGGCA
195 TGGGAATGAACTCCATATGCCTAAGCCAACCGA-GAGAACAAACGGGC--G-G-GCGGGAGGGCA
* * *
17734846 CTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGC
255 CTACGCCGGCCAGAGAGACGAGAGGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
17734911 ACATCTTCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTT
320 ACATCTTCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTT
*
17734976 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTCGAAACCT
384 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCAGGATTTTCGAAACCT
* * * * * *
17735041 TTTGCGGTTCGGGATTTTTTTACATTTTTTTGGAA-GGATTTTTGACCCCAAACATGGTAGATGT
449 TTTACGGTTCGGGA--TTTTTAAAATTTTTTCGAACGGAGTTTTGACCCCAAACATGGTAGACGT
* * * * * *
17735105 GATCCTTGTATTTTTTTTGGCATGTACAAAAATATTCAACTAAAAATTTGAAGTGTTCAAGATTT
512 GATCCTTGTATTTTTCTTGGCATGCACAAAAA-AATCAACTAAAAACTCGAAGTGTACAAGATTT
*
17735170 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
576 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCA
* * * *
17735235 AGATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATA
641 AAATCTCAAATGCTTTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGACAAATA
17735300 TAAGGGCCAAGTACCAGCACCCATC
706 TAAGGGCCAAGTACCAGCACCCATC
17735325 GCACATCATT
Statistics
Matches: 655, Mismatches: 70, Indels: 16
0.88 0.09 0.02
Matches are distributed among these distances:
731 83 0.13
732 122 0.19
733 3 0.00
734 1 0.00
735 111 0.17
736 91 0.14
737 59 0.09
738 185 0.28
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (732 bp):
ATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAC
CCACGAAACAAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGC
CGGGTCTCCCTCTGCGTCATGCCAATCCTACTACCGCAACCCTCGATCCGATCTGACCCTAGACT
GGGAATGAACTCCATATGCCTAAGCCAACCGAGAGAACAAACGGGCGGGCGGGAGGGCACTACGC
CGGCCAGAGAGACGAGAGGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCAGGATTTTCGAAACCTTTTACGG
TTCGGGATTTTTAAAATTTTTTCGAACGGAGTTTTGACCCCAAACATGGTAGACGTGATCCTTGT
ATTTTTCTTGGCATGCACAAAAAAATCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAA
TGCTTTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGACAAATATAAGGGCCAA
GTACCAGCACCCATCAC
Found at i:17736405 original size:26 final size:26
Alignment explanation
Indices: 17736368--17736419 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17736358 TCTGGTCCGA
* *
17736368 TCTTAGATTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
17736394 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
17736420 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:17736676 original size:889 final size:888
Alignment explanation
Indices: 17734592--17739862 Score: 6506
Period size: 899 Copynumber: 5.9 Consensus size: 888
17734582 CCATCACATA
*
17734592 TTAGACCT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCC
1 TTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * ** *
17734656 ACGAAACAAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGATGATCGGCCG
65 ACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCG
* *
17734721 GGTCCCCTCTGCGTGATGCCGATCCTACTATCGTAACCCTCGGTCCGATCTGATCTTAGACTGGG
130 GGTCCCCTCTGCGTGCTGCCGATCCTACTA-CGTAACCCTC-GTCCGGTCTGATCTTAGACTGGG
* * *
17734786 AATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGAGCGGGCGGGCACTACG
193 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC--G-G-GCGGGCGGGCACTACG
* * *
17734851 CCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
254 CCGGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
17734916 TTCATATTTCTACGTGCCAACGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCC
319 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17734981 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTCGAAACCTTTTGC
384 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * * * * * **
17735046 GGTTCGGGATTTTTTTACATTTTTTTGGAAGGATTTTTGACCCCAAACATGGTAGATGTGATCCT
449 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * * * * * *
17735111 TGTATTTTTTTTGGCATGTACAAAAATATTCAACTAAAAATTTGAAGTGTTCAAGATTTTGTGAC
514 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17735176 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAGATCT
579 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17735241 CAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGG
644 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17735306 CCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
709 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * **
17735371 CCAACGCCACCGGTCAGGTTCTCCGTCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAG
774 CCAATGCCGCCGGTCAGGTTCT-C--CGA-G--CCGAC-A-GGTGCCCCGACGAAGAAAAATGCG
* * ***
17735436 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCCAATCCGATC
831 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATC
* * * *
17735494 TTAGACTGGCAATGAACTCTGTATGCTTCGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
17735559 CGAAATAAGCGTGCGGGCGTTCAGCCGTCCAAAGGGGCAGGATGCGCAAGCCGGGCATTAGCCGG
66 CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGG
* * * * *
17735624 ATCCCTCTCTACGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGG
131 GTCCC-CTCTGCGTGCTGCCGATCCTACTAC-GTAACCCTC-GTCCGGTCTGATCTTAGACTGGG
* * *
17735689 AATGAACTCCATATGCCTAAGCCAACTGACGGAACGAGT----GGGCGGGCGGGCACTACGCCGG
193 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGG
* *
17735750 CCAGAAAGAC-GGATGCGCAAGCCG-TGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCA
258 CCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
17735812 TATTTCTACGTGCC-ATTCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCA
323 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
17735876 TGTGAAGTTTAATGGCAAGACGACTCGTTTT-T-TTTTCTCATGATTTTTGAAACTTTTTGCAAT
388 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT-TCACGATTTTTGAAACTTTTTGCGGT
* *
17735939 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCGGGCCCAAACTTGGTAGACATGATCCTTGT
452 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* * * *
17736004 ATTTTTGATGGCATGTACAAAAAAATTCAGCAAAAAACTGGAAGTGTACAAGATTTTGTGACCAT
517 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * * * *
17736069 TTG-AAAAACTATCCCCATTTCAGACACGTTAACGGCTACTGGCCGCAAACCTATAAAATCTGAA
582 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17736133 ATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
647 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* ** * *
17736198 TGTACCAGCAGTCATCACACATCATGTGTGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCA
712 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * *
17736262 ATGCGGCCAGTCAGGTTCTCCG-G-CGAC-GGTGCCCCGATGAAGAAAAATGCGGCACCAGCACA
777 ATGCCGCCGGTCAGGTTCTCCGAGCCGACAGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
17736324 TGCCCAAG-CCAACATGTGGTGGT-GCAACCCTTGGTCTGGTCCGATC
842 TGCCCGAGCCCAGCATGTGCT-GTCGCAACCCTCGGTCTGGTCCGATC
* * * *
17736370 TTAGATTGGGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
17736435 CGAAATGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAACCGG
66 CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGG
** * * *
17736500 GTCCCACTCTATGTGCTACCGATCCTACTACGTAACCCTCTGTTCGGTCTGATCTTAGACGGGGA
131 GTCCC-CTCTGCGTGCTGCCGATCCTACTACGTAACCCTC-GTCCGGTCTGATCTTAGACTGGGA
* * * *
17736565 ATGAACTCCGTATGCCTATGCCAACCGATGAAACGAGTGGACGGGCGGGCGGGCACTACGTCGGC
194 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGC
17736630 CA-AGGAGACGGGATGCAG-AAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
259 CAGA-GAGACGGGATGC-GCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
17736693 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTG
322 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* ** * *
17736758 ACGTGAAGTTTCATAGCAAGATAACTCGTTTTCTATTTTTCACGATATTTGAAACTTTTTGCGAT
387 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* *
17736823 TCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
452 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* * *
17736888 ATTTTTGTT-GCTACGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
517 ATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
17736952 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCA
581 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
17737017 AATGCTCTTTGAGCGGGTGTGAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGC
646 AATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
17737081 CAAGTACCAGCACCCATCGCACATCATGTGTGCACACGCCCCCGGCCCCCCCGATCGTCGGAACC
710 CAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACC
*
17737146 CCAATGCGGCCGGTCAGGTTCTCCGGTAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
774 CCAATGCCGCCGGTCAGGTTCTCC-G--A-G--CCGAC-A-GGTGCCCCGACGAAGAAAAATGCG
* * * * * *
17737211 GCACCAGCACATGCTCGAGCCCAACATATGCTGTCGCAACGCTCGGTCCGATCCGATC
831 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATC
* * *
17737269 TTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
17737334 CGAAACGAGCGTGCGAGCGCTTAGCCGGCTAAAGGGGCAAGATGCGTAAGCCGGGGATCAGCCGG
66 CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGG
* * * * * *
17737399 GTCCCATTCTGCATGCTACCAATCCTACTGCTGTAA--CGC-T-CGGTCTGATCTTAGACTGGGA
131 GTCCC-CTCTGCGTGCTGCCGATCCTACTAC-GTAACCCTCGTCCGGTCTGATCTTAGACTGGGA
*
17737460 ATGAACTCCGTATGCCTAAGCCAGCCGACGAAACGAACGTGCAGGCGGGCGGGCGGGCACTACGC
194 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GTG--GGCGGGCGGGCGGGCACTACGC
*
17737525 CGGCTAGAGAGACGGGATGCGCAAGCC-ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
255 CGGCCAGAGAGACGGGATGCGCAAGCCGA-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * * *
17737589 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGGTTGTAAATTCACACAATGGTCCCTTAGGCC
319 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
17737654 TTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTGC
384 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * *
17737719 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCTCCAAACTTGTTAAACATGATCCT
449 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * *
17737784 TGTTTTTTTGTTGGCATGCAGAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
514 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17737849 CATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCT
579 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17737914 CAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGG
644 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
17737979 CCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCCGGCCCCCCCGATTGTCAGAACC
709 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * * *
17738044 CCGATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGCG
774 CCAATGCCGCCGGTCAGGTTCT-C--CGA-G--CCGAC-A-GGTGCCCCGACGAAGAAAAATGCG
* * *
17738109 GCACCAGCACATGCCCGAGCCGAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATC
831 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATC
* * * * * * * *****
17738167 TTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTACATACG-GTTAGACTGGGAA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** ** **** * * * * ** * * * * * *
17738231 TGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGG---
66 CGAAATGAGCGTGCGGGCGCTCAGCC-GGCCA-GAG-GGGCAGG-ATGC-GCAAGCC-GGGGATC
* * * * * *
17738293 -GCCGGGTCCCCTCTGCGTGCTGTCGATCCTACTGCCATCACCCTCAGTCCAGTTTGATCTTAGA
125 AGCCGGGTCCCCTCTGCGTGCTGCCGATCCTACT-ACGTAACCCTC-GTCCGGTCTGATCTTAGA
** ** * *
17738357 CCAGGAATGAACTCCGTATGCCTAAGCTGACCGAGGAAACTAGCGGGCGAGCGAGCGGGCGAGCG
188 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A-------A-CGAGTGGGC--G-G
* * * * *
17738422 AGCGGGCGGGCACTACGCTGGCCAAAAAGACGGGATGCGCAAGCC-ACGAATCGATGGGGTGGTA
238 -GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGA-GGATCGATAGGGTGGTA
* * * *
17738486 GGTGGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGGTTGTAAATTCAT
301 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
17738551 ACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACC
366 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
17738616 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAGGGAGTTTTGGCCCCAAA
431 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
17738681 CTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
496 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * * * *
17738746 GGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTTAGACACTATAATGGCTACTAGT
561 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
17738811 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGAT
626 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
17738876 AGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCCGG
691 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCC-G
* * * *
17738941 GCCCCCCTGATCG-CTGGAACCCCAATGCCACCGGTTAGGTTCTCCG-G-CG--A--TGCTCCGA
753 GCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGAGCCGACAGGTGCCCCGA
* ** * ** * * *
17738999 CGAAGAAAAATACGGCACCAGTGCATGCCCAAGCCCAGCATGTGCTACCGCATCCCCCGATCTGG
817 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGG
*
17739064 TCTGATC
882 TCCGATC
* * * *
17739071 TTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCTGGATGCCTAAGTCACCCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
17739136 CGAAATGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGTAAGCTGAGGATCCA-CCG
66 CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT-CAGCCG
* * *
17739200 GGTCCCCCTCTGCGTGTTGCCGATCTTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGG
130 GGT-CCCCTCTGCGTGCTGCCGATCCTACTA-CGTAACCCTC-GTCCGGTCTGATCTTAGACTGG
* * ** *
17739265 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGATGGGCGGGCACTACGTCG
192 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCG
* *
17739330 GCCAGAGAGACAGGATGCGCAAGCCGTA-AATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
257 GCCAGAGAGACGGGATGCGCAAGCCG-AGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
17739394 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
321 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
** * * ** **
17739459 CACAAGAAGTTTCATGGCAAGACGACACGTTTTTTATTTTTCACGATTTTCAAAACTTTTTATGG
386 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
* * *
17739524 TTCGAGATTTTTTAAAATTTTTTTCAGATGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
451 TTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
* * *
17739589 GTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACCCGAAGTGTATAAGATTTTGTGACC
515 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
17739654 ATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
580 ATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
17739718 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGG
644 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * *
17739783 CCAAGTTCCAGCACACATCGCACATCATCTGCGCACACCCCCCCGCCCCTCCGATTGTCGGAACC
709 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* * *
17739848 CTAATGTCGTCGGTC
774 CCAATGCCGCCGGTC
17739863 TGGTCTGATC
Statistics
Matches: 3779, Mismatches: 497, Indels: 202
0.84 0.11 0.05
Matches are distributed among these distances:
875 63 0.02
876 163 0.04
877 41 0.01
878 1 0.00
879 28 0.01
880 16 0.00
881 9 0.00
882 41 0.01
883 76 0.02
884 144 0.04
885 151 0.04
886 33 0.01
887 50 0.01
888 241 0.06
889 411 0.11
890 138 0.04
891 75 0.02
892 51 0.01
893 9 0.00
894 13 0.00
895 85 0.02
896 3 0.00
897 21 0.01
898 240 0.06
899 647 0.17
900 20 0.01
901 7 0.00
902 127 0.03
903 141 0.04
904 192 0.05
905 18 0.00
907 2 0.00
910 2 0.00
911 3 0.00
913 4 0.00
914 3 0.00
915 468 0.12
917 7 0.00
918 35 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGG
GTCCCCTCTGCGTGCTGCCGATCCTACTACGTAACCCTCGTCCGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGAGCCGACAGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATC
Found at i:17737320 original size:26 final size:26
Alignment explanation
Indices: 17737268--17737320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17737258 CCGATCCGAT
* * *
17737268 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
17737294 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
17737320 C
1 C
17737321 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17738203 original size:26 final size:26
Alignment explanation
Indices: 17738167--17738243 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
17738157 TGGTCTGATC
17738167 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* * *
17738193 TTAGACTGGGAATGAACTACATACGG
1 TTAGACTGGGAATGAACTCCGTATGG
17738219 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17738244 CCTAAGTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:17738415 original size:12 final size:12
Alignment explanation
Indices: 17738398--17738429 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
17738388 CGAGGAAACT
17738398 AGCGGGCGAGCG
1 AGCGGGCGAGCG
17738410 AGCGGGCGAGCG
1 AGCGGGCGAGCG
17738422 AGCGGGCG
1 AGCGGGCG
17738430 GGCACTACGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.16, C:0.25, G:0.59, T:0.00
Consensus pattern (12 bp):
AGCGGGCGAGCG
Found at i:17740609 original size:26 final size:26
Alignment explanation
Indices: 17740580--17740632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17740570 CCGGTTTGAT
17740580 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17740606 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17740632 C
1 C
17740633 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17742815 original size:26 final size:26
Alignment explanation
Indices: 17742777--17742829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17742767 CCGGTTCGAT
*
17742777 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17742803 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17742829 C
1 C
17742830 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17743704 original size:26 final size:26
Alignment explanation
Indices: 17743675--17743724 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17743665 CCGGTTCAAT
17743675 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
17743701 CTTAGATTGGGAATGATCTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17743725 TGCCTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17743904 original size:898 final size:889
Alignment explanation
Indices: 17742069--17743907 Score: 2650
Period size: 898 Copynumber: 2.1 Consensus size: 889
17742059 GGTCCCATCC
* ** * * *
17742069 GATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGAGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGAGCAGGC
*
17742134 GGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGAGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGAGATAGGTGGGTT
*
17742199 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGT
* *
17742264 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCAATTTTTCACGATTTTCAA
* * * * *
17742329 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAATCCCGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTCTGGCCCCAAACCCGGTAG
17742394 ACATGATCCTTGTATTTTTGTTGGCGTGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTCAAGA
326 ACATGATCCTTGTATTTTTGTTGGCGTGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTCAAGA
17742459 TTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
391 TTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17742524 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTCCTGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAGTTTCATGAGGGATAGGGGGCCA
* * *
17742589 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCGCACACCCCCCCGATTGCCGGAAC
521 ATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGCGCACACCCCCCCGATCGCCGGAAC
* *
17742654 CCCAATGCTGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGT
586 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGC
* * * *
17742719 GGCACCATCACATGCTCAAGCCTAGCATGTGCTACTGCAACCCTCAGTCCGGTTCGATCTTAGAC
651 AGCACCAGCACATGCTCAAGCCCAGCATGTGCTACTGCAACCCTCAGTCCGGTTCAATCTTAGAC
* * * * ** *
17742784 TGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAT
716 TGGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCACCAAAA
* * * * *
17742849 GAGCATGCGGGCGTTGAACCGACCAGAGGGGTGGGATGCGAAACCCGGGGATCAACTGGGTCCCC
781 GAGCATGCGGGCGTTG-ACCGACCAAAAGGGCGGGATGCGAAACCCGGGAATCAACCGGGTCCCC
* * * * *
17742914 CTCTTCGTGCTGCCGACCCTGCTGCCCTAACCTTTGGTCCGGTCT
845 CTCTACGTGATGCCAACCCTACTGCCCTAACCTTCGGTCCGGTCT
* *
17742959 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCAGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGAGCAGGC
* * * *
17743024 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATTGGTGGGTT
66 GGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGAGATAGGTGGGTT
*
17743089 TAGGCACGTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGT
* * *
17743154 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGAATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCAATTTTTCACGA-TTTTCA
* ** *
17743219 AAA-TTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGAAAGGAGTTCTGG-CCCAAACTTGTTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTCTGGCCCCAAACCCGGTA
** * *
17743282 GATGTGATCTTTGTATTTTTGTTGGCGTGCACAAA-AAATTCAGCTAAAAACTTGAAGTGTACAA
325 GACATGATCCTTGTATTTTTGTTGGCGTGCACAAAGAAATTCAGCTAAAAACTCGAAGTGT-CAA
* * *
17743346 GATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
17743411 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAGTTTCATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAGTTTCATGAGGGATAGGGGGC
**
17743476 CAATATAAGGGCCAAGTACAATTACCCATTGCACATCATGTGCGCACACCCACCCGGCCCCCCCG
519 CAATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGCG--CA--CA-----CCCCCCCG
* * * * * *
17743541 ATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCTGGCGATGCTCCGGCGGTGGTGC-CCTGGC
575 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCACC-GGC
* * *
17743605 GAAGAAAAATGCAGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGG
639 GAAGAAAAATGCAGCACCAGCACATGCTC-AAGCCCAGCATGTGCTACTGCAACCCTCAGTCCGG
* * *
17743669 TTCAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGATTGGGAATGATCTCCGTATGCCTAAAT
703 TTCAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAAT
* * * *
17743734 TAACCCACCAAAAGAGCATGCAGGTGC-TCTG-CCGGCCAAAAGGGCGGGATGCGTAAGCCGGGA
768 CAACCCACCAAAAGAGCATGC-GG-GCGT-TGACCGACCAAAAGGGCGGGATGCGAAACCCGGGA
** * * *
17743797 ATCGGCCGGGTTCCCCTCTACGTGATGCCAATCCTACTGCCAC-AACCTTCGGTCTGGTCT
830 ATCAACCGGGTCCCCCTCTACGTGATGCCAACCCTACTGCC-CTAACCTTCGGTCCGGTCT
* * *
17743857 GATCTTAGACTGGGAATGAACTCCATATGGCTAAGCCAACAGACGAAACGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA
17743908 ACAGGCAGGC
Statistics
Matches: 842, Mismatches: 90, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
888 24 0.03
889 209 0.25
890 276 0.33
891 10 0.01
893 2 0.00
897 3 0.00
898 310 0.37
899 4 0.00
900 4 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (889 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGAGCAGGC
GGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGAGATAGGTGGGTT
TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCAATTTTTCACGATTTTCAA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTCTGGCCCCAAACCCGGTAG
ACATGATCCTTGTATTTTTGTTGGCGTGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTCAAGA
TTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAGTTTCATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGCGCACACCCCCCCGATCGCCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCACCGGCGAAGAAAAATGC
AGCACCAGCACATGCTCAAGCCCAGCATGTGCTACTGCAACCCTCAGTCCGGTTCAATCTTAGAC
TGGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCACCAAAA
GAGCATGCGGGCGTTGACCGACCAAAAGGGCGGGATGCGAAACCCGGGAATCAACCGGGTCCCCC
TCTACGTGATGCCAACCCTACTGCCCTAACCTTCGGTCCGGTCT
Found at i:17744407 original size:26 final size:26
Alignment explanation
Indices: 17744369--17744421 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17744359 CTGGTCTGAT
*
17744369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17744395 CTTAGATTAGGAATGGACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17744421 C
1 C
17744422 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17744602 original size:694 final size:692
Alignment explanation
Indices: 17743236--17744590 Score: 1818
Period size: 694 Copynumber: 2.0 Consensus size: 692
17743226 TACGGTTCGT
* * * *
17743236 GATTTTTTAAAATTTTTTCGAAAGGAGTTCTGGCCCAAACTTGTTAGATGTGATCTTTGTATTTT
1 GATTTTTTAAAATTTTTTCGAAAAGAGTTCTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTT
** *
17743301 TGTTGGCGTGCACAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGCAA
66 TGTTGGCAAGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAA
** * * *
17743366 AAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
131 AAAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTC
* *
17743431 TTTAAAGGGGTGTGAGTTCTTGAAGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA
196 TTTAAAGGGGTGTGAGTTCTCGAAGTTTCATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACA
** * * *
17743496 ATTACCCATTGCACATCATGTGCGCACACCCACCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
261 AGCACCCATTACACATCATGTGCACACACCCACCCGGCCCCCCCGATCGTCAGAACCCCAATGCC
* * * * * * * * *
17743561 GTCGGTTAGGTTCTCTGGCGATGCTCCGGCGGTGGTGCCCTGGCGAAGAAAAATGCAGCACCAGC
326 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGCAGCACCAGC
17743626 ACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGA
391 ACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGA
* **
17743691 ACTCCGTAAGCTTAGATTGGGAATGATCTCCGTATGCCTAAATTAACCCACCAAAAGAGCATGCA
456 ACTCCGTAAGCTTAGATTAGGAATGATCTCCGTATGCCTAAACCAACCCACCAAAAGAGCATGCA
* * * * * * *
17743756 GGTGCTCTGCCGGCCAAAAGGGCGGGATGCGTAAGCCGGGAATCGGCCGGGTTCCCCTCTACGTG
521 GGCGCTCAGCCGGCCAAAAGGGCGGGATGCGCAAACCGGGAATCAGCCGGGTTCCCCTCCACATG
* * ** *
17743821 ATGCCAATCCTACTGCCACAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
586 ATGCCAATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATA
*
17743886 GCTAAGCCAACAGACGAAACGAACAGGCAGGCGAGCGTGCGG
651 CCTAAGCCAACAGACGAAACGAACAGGCAGGCGAGCGTGCGG
*
17743928 GATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAAGAGTTCTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
17743993 TTGTTGGTAAGGACAAAAAAATTCAGCTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
65 TTGTTGGCAAGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGC
17744057 AAAAGAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGT-AAATCTCAAATG
129 AAAA-AGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATG
* * * * *
17744121 CTCTTTGAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGT
193 CTCTTTAAAGGGGTGTGAGTTCTCGAAGTTTCATGAGGGATAGAGGGCCAATATAAGGGCCAAGT
* * *
17744186 ACCAGCACCC-TTCACACATCGTGTGCATACACACCC-CCCGGCCCCCCCGATGGTCAGAACCCC
258 ACAAGCACCCATT-ACACATCATGTGC--ACACACCCACCCGGCCCCCCCGATCGTCAGAACCCC
17744249 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAACAAAAAAGTG-A
320 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA-AAAAAA-TGCA
* * *
17744313 -CACCAGCACATGCCTGAGCCCAGCATGTGCTG-TCGCATCCCAT-GGTCTGG-TCTGATCTTAG
383 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCT-GCAACCC-TCGGTCCGGTTC-AATCTTAG
* * * *
17744374 ACTGGGAATGAACTCCGTATGCTTAGATTAGGAATGGA-CTCTGTATGCCTAAGCCAACCCA-TA
445 ACTGGGAATGAACTCCGTAAGCTTAGATTAGGAAT-GATCTCCGTATGCCTAAACCAACCCACCA
* * * * * * *
17744437 AAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAACCGGGTATCAGTCGGG-
509 AAA-GAGCATGCAGGCGCTCAGCCGGCCAAAAGGGCGGGATGCGCAAACCGGGAATCAGCCGGGT
* * *
17744501 TCTCTCTCCACAT-ACTGCCGATCCTACTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGG
573 TC-CCCTCCACATGA-TGCCAATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGG
*
17744565 AATGAACTCCGTATACCTAAGCCAAC
636 AATGAACTCCATATACCTAAGCCAAC
17744591 CAATGAAACG
Statistics
Matches: 574, Mismatches: 74, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
692 33 0.06
693 140 0.24
694 383 0.67
695 16 0.03
696 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (692 bp):
GATTTTTTAAAATTTTTTCGAAAAGAGTTCTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCAAGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAA
AAAGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTC
TTTAAAGGGGTGTGAGTTCTCGAAGTTTCATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACA
AGCACCCATTACACATCATGTGCACACACCCACCCGGCCCCCCCGATCGTCAGAACCCCAATGCC
GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGCAGCACCAGC
ACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGA
ACTCCGTAAGCTTAGATTAGGAATGATCTCCGTATGCCTAAACCAACCCACCAAAAGAGCATGCA
GGCGCTCAGCCGGCCAAAAGGGCGGGATGCGCAAACCGGGAATCAGCCGGGTTCCCCTCCACATG
ATGCCAATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATA
CCTAAGCCAACAGACGAAACGAACAGGCAGGCGAGCGTGCGG
Found at i:17745950 original size:26 final size:26
Alignment explanation
Indices: 17745921--17745973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17745911 CCGGTCTGAT
*
17745921 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
17745947 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17745973 C
1 C
17745974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17746142 original size:654 final size:653
Alignment explanation
Indices: 17744865--17746164 Score: 1833
Period size: 654 Copynumber: 2.0 Consensus size: 653
17744855 TTTTGGTCCC
* * *
17744865 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCATCTAAAAACTCG
1 AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
** * *
17744930 AAGTGTATGAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
66 AAGTGTACAAGATTTTGTCACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
17744995 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGG
131 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * *
17745060 GACAGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGTACACCCCCCGG
196 GACAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
* * * * ** *
17745125 CCCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTG
261 CCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTG
** * **
17745190 CCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCG
326 CCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
* *
17745255 GTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTCGACTGGGAATGAACTTCGTATGC
391 GTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTATGC
* * * * *
17745320 CTAAATCAATCAACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCC
456 CTAAATCAACCAACGAAACGAGCGTGCGGACGCACAACCGGCCAGAGGGGCAGGATGCACAAGCC
* * * **
17745385 AAGGATCAACCGGGTCCCTCTCTGCATGCTGCCGATCCTGCTACCGTAGCCCTCGGTCTGCTCTG
521 AAGGATCAACCGGGTCCCTCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGATCTGCTCCA
* ** * *
17745450 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCGTGCA
586 ATCTTAGACTAGGAATGAACTCCATAAGCCTAAGCCAACCAACGAAACGAGCAGGCGGGCGTGCA
17745515 AAA
651 AAA
*
17745518 AAACTCGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCG
1 AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
17745582 AAGTGTACAAGATTTTGTCACCATTTTAGA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 AAGTGTACAAGATTTTGTCACCATTTGA-ACAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17745646 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG-G
130 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
** *
17745710 GAGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGTGCACACCCCT
195 G-GACA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCC-
* *
17745775 CCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTTAGGTTCTCCAATGATGCTCCGACGA
256 CCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGA
* * *
17745840 TGGTGCCCCGATGAAGAAAAATACGG-TCCAGCACATGCCCGATCCTAGCATGTGCTGCCACAAC
321 TGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
* ** **
17745904 CCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAAC-TCT
386 CCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTC-
* * * *
17745968 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGACGCACATCCGGCCAGAGGGGCAGGATGCG
450 GTATGCCTAAATCAACCAACGAAACGAGCGTGCGGACGCACAACCGGCCAGAGGGGCAGGATGC-
* * * * *
17746033 A-AAGCCGAGGATCGACCGTGTCCC-CTTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTTC-A
514 ACAAGCCAAGGATCAACCGGGTCCCTC-TCTGCATGCTGCCGATCCTGCTACCGCAACCC-TCGA
* * ** *
17746095 TCTGGTCCAATCTTAGACTGGGAATGAACTCTGTAAGCCTTAGCCAACCAACGAAACGAGCAGGC
577 TCTGCTCCAATCTTAGACTAGGAATGAACTCCATAAGCCTAAGCCAACCAACGAAACGAGCAGGC
17746160 GGGCG
642 GGGCG
17746165 GGCACTACGC
Statistics
Matches: 568, Mismatches: 70, Indels: 17
0.87 0.11 0.03
Matches are distributed among these distances:
651 2 0.00
652 143 0.25
653 90 0.16
654 250 0.44
655 83 0.15
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (653 bp):
AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTCACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
GACAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
CCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTG
CCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
GTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTATGC
CTAAATCAACCAACGAAACGAGCGTGCGGACGCACAACCGGCCAGAGGGGCAGGATGCACAAGCC
AAGGATCAACCGGGTCCCTCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGATCTGCTCCA
ATCTTAGACTAGGAATGAACTCCATAAGCCTAAGCCAACCAACGAAACGAGCAGGCGGGCGTGCA
AAA
Found at i:17748452 original size:26 final size:26
Alignment explanation
Indices: 17748423--17748475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17748413 CTGATCCAAT
17748423 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17748449 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17748475 C
1 C
17748476 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17749362 original size:26 final size:26
Alignment explanation
Indices: 17749333--17749382 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17749323 ATCCGATCTA
*
17749333 AGACTAGGATTGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
*
17749359 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
17749383 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:17750272 original size:26 final size:25
Alignment explanation
Indices: 17750233--17750284 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17750223 CCGATTCGAT
*
17750233 CTTAGACTGAGAATGAATTGCGTATG
1 CTTAGACTGAGAATGAAAT-CGTATG
*
17750259 CTTAGACTGGGAATGAAATCGTATG
1 CTTAGACTGAGAATGAAATCGTATG
17750284 C
1 C
17750285 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGAGAATGAAATCGTATG
Found at i:17751159 original size:26 final size:26
Alignment explanation
Indices: 17751121--17751173 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17751111 CCAGCCCAAT
17751121 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17751147 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17751173 C
1 C
17751174 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17751545 original size:895 final size:896
Alignment explanation
Indices: 17747097--17765637 Score: 22870
Period size: 903 Copynumber: 20.8 Consensus size: 896
17747087 TTTTTCATGA
* * * * * * * *
17747097 TTTTAAACTTTTTTCGAAATGAGTTTTGGCCCCAAACATGGTAAACATGATCTTTGTATTTCTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17747162 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
17747227 AGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACATGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
17747292 TAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
17747357 CACCAATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCTGATCGCCGGAACCCCAATGCCGT
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * * *
17747420 CGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATACGGCTA-CAGCA
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC-ACCAGCA
* * * * * * *
17747484 TATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACAGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * **
17747549 CTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATGATATAAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
17747614 GCGCTCAGCCGGCCAGAAGGACGGGATGCTCAAGCTGGGGACCGGTCAGGTCCCCCGT-TGCGTG
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC-TCTGCGTG
* * * *
17747678 CTACCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17747743 CCTAAGCCAACCGATAAAA-TGAGCTGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCG
648 CCTAAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
17747807 CAAGCTGTGGATAGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
713 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
17747872 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAA
778 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
17747937 GACAACTCATTTTTTATTTTTCATGGTTTTTGAAACATTTTGCGGTTCAGGATT
843 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
17747991 TTTTAAAATTTCTTCGGAAGGAGTTTTGGCTCCAAGCTTGGTAGACGTGATCCTTGTATTTTAGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17748056 TGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT----A-TTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
17748116 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
17748181 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * **
17748246 CACCCATTCGCACATCATGTCCGCACA-CCCCCCGGCCCCCTCAATCG-CTGGAACCCCAATGTT
261 CACCCA-TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCC
** * * *
17748309 GCCGGTCAGGTTCAACGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * *
17748374 ACATGCCCGAGCCTAGCATGTGTTGCCGCAACACTCGGTCTGATCCAATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * *
17748439 ACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
17748504 GGTGCTCAGCTGGCCAGAGGGGCGGGATTTCGCAAGTCGGGGATTGGCCGGGTCCCCCTTTGCAT
519 GGCGCTCAGCCGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* * * * * * * *
17748569 GCTGCCAATCTTGCTACAGCAACCCTCCATCCGATTTGATCTTAGACTGGGAATGAACTCCGTAT
583 GCTGCCGATCCTGCTGCCGCAACCCT-CGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
17748634 GGCTAAGCCAACTGACGAAACTAGCGTGCGGGCGGACGGGCGGGCGGCCATGACTCTGGCCAGAG
647 GCCTAAGCCAACCGAC-AAA--A--GT--GAGCGGGCGGGCGGGC--AC-T-ACGCCGGCCAGAG
* * * *
17748699 AGATGGGATGTGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTT
701 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
17748764 TGCATGCCAATACCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
766 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * **
17748829 GTTTCGTGGGCAAGACGACT--TATTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCAAG
831 GTTTCAT-GGCAAGACGACTCGT-TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
17748892 ATT
894 ATT
*
17748895 TTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACCTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17748959 TGGCATGCATAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
17749024 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
17749089 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
17749154 CACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATTGCCGGAACCCTAATGCCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * * *
17749218 CGGTCAGGTTCTCCAGTGATGCTCCTGCGA-GGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * * * *
17749282 GTGCCCCAGCCCAGCATGTGCTGCCGCAACCCCTCAGTCTGATCCGATCTAAGACTAGGATTGAA
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
*
17749347 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * *
17749412 GTGCTCAGCCGGCCAGAAGGGCAGGACGCACAAACCGGGGATCGATCGGGTCCCCCTCTGTGTGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * * * * * * *
17749477 TGCCAATCCTGCTACCACTAGCCTCGGTCCAG-TCTGATGTTAGACTGGGAATTAACTCTGTATG
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17749541 CCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGCGACGGGAT
648 CCTAAGCCAACCGAC-AAA--AGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* ** * * * *
17749606 GCGCGAGCCAAGGATCGATAGGGTGGTAAGTGGATTGAGGCACATCTTCATATTTCTGCATGCCA
710 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
*
17749671 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGG
775 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
** *
17749736 CAAGACGACTTATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
840 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * * *
17749793 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTCATCTTTTTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTG
* * * * *
17749858 TTGGCATGAACAAAAATATTCAGCTAAAAACTCGAACTATACAACATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
17749923 AAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTC-
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
17749987 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
17750052 GCACCCATCGCACATCATGTGCGCACACCCCGCCCTCGGCCCCCTCGATCG-CTGGAACCCCAAT
260 GCACCCATCGCACATCATGTGCGCACA-CCC-CCC-CGGCCCCCCCGATCGTC-GGAACCCCAAT
* * * * * * * *
17750116 GCCACCAGTCAGATTCTCCGACGATGCTCCGGCGATGGTGTCTCAACGAAAAAAAATGCGGCACC
321 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * *
17750181 AGCACATGCCCAAGCCCAGCATGTCCTGCCGCAACCCTCGATCCGATTCGATCTTAGACTGAGAA
386 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * *
17750246 TGAATTGCGTATGCTTAGACTGGGAATGAAAT-CGTATGCCTAAGTCAACCCACAAAATGAGCGT
451 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** * * * * * * *
17750310 ATGGTCGCTCAACTGGCCAGAAGGGCTGGATGCACAAGCCGGAGATCGGTCGGGTCCCCCTCTGC
516 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * *
17750375 GTGCTGCCGCAACC--CTG--G-----CT-ATTC----AGATCTTAGACTGGGAATGAACTCCGT
581 GTGCTGCCG-ATCCTGCTGCCGCAACCCTCGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGT
* * *
17750426 ATGCCTAAGCCAACTGACGAAACGAGGGGGAGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAG
645 ATGCCTAAGCCAACCGAC-AAA--A--GTGAGCG-GG-CGGGCGGGCACTACGCCGGCCAGAGAG
*
17750491 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
703 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * * * *
17750556 CATGCAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGGCTTCACGTCAAGT
768 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** * * * * **
17750621 TTAATGGTGAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAGCTTTTTGCGGTTCAAGATT
833 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
17750685 TTTTTAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17750750 TGGCATGCAAAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** *
17750815 AGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCT
131 AGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
17750879 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
17750944 GCACCCATCACACATCATGTGCGCAGA-CCCCCTGGCCCCCCCGATCATCAGAACCCTAATGCCG
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * **
17751008 CCGATCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
** * * *
17751073 CATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGCCCAATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
17751138 CTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* ** * * * *
17751203 GCGCTCAGCCGGTCAGAGGGGCTTGATGCACAAGCCGAGGATCGATCGTGTCCCCCTCTGCGTGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* *** * * * *
17751268 TACCGATCCTGCTATTGCAATCCTCAATTCGGTTCAATCTTAGACTGGGAATGAACTCTGTATGC
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
17751333 CTAAGCCATCCGACAAAA-TGAGCGGGCGGGCGGGCACTACACCGGCCTGAGAGACGGGATGCGC
649 CTAAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
17751397 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGC
714 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
17751462 CATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAG
779 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17751527 ACGACTCATTTTCTATTTTTCGTGATTTTTTAAACTTTTTACGGTTTGGGATT
844 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *** *
17751580 TTTTTAAATTTTTTCGGAAGGAGTTTTGGAGGCAAACTTGGTAGACGTGATCCTTGCATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17751645 TGGCATGCACAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
17751710 AGTGTCCCCGTTTTAGACATTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
17751775 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** ** * * * *
17751840 CACCCATTGCACATCATGTGTGCACA-CCCCTTGGCCCCCTTGATCGCCGAAACCCTAATACCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * * *
17751904 CGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGTACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
17751969 ATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG-A-
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * *
17752032 -----A--CTT---C---G--T--A-T--G--T--CTAAGCCAACCCACGAAACAAACGTGCGGG
456 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * *
17752073 TGTTTAGCCGGCCAGAGGCGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTACGTGCT
521 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * ** * * * *
17752138 GCCAATCTTACTGCCGCAACCCTCGGTTCACTCCAATCTTAGACTAGGAATGAACTCCGTGTGCC
586 GCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * * *
17752203 TAAGCCAATCGACGAAATGAACAGACGCGCGGCGGGCGGGTATTACACCGGCTAGAAAGACGGGA
650 TAAGCCAACCGAC--AA--AAGTGA-GCG-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
17752268 TGCGCAAGCCTTAGATCGATAGGGCGGTACGTGGGTTTAGGCACATCTTCATATTTCTGA-ATGG
709 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGC
* * *
17752332 CAATGTCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACCTGAAGTTTCAT
773 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
17752397 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
838 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * ** *
17752456 TATTAAAATTTTTTTGAAAGGAGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17752521 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
17752586 AGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-CAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
17752650 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
17752715 CACCCATCGCACATCCTATGGGCACACCCCCCCGGCCACCCCGATCGTCAGAACCCCAATGCCAC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *
17752780 CAGTCAGGTTCT---ACGA---T-----GATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * ** * *
17752834 ATGCCCTG-GCCCAGCATGTGCTGCTGCAACCCTCAGTCTAGTTCAATCTTAGACTGGGAATGAA
391 ATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * * *
17752898 CTCTGTTTGCTCAGACTGGGAATGAACTCTGTGTGCCTAAGTCAACCCATGAAATGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
17752963 GAGCTTAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCTCCTCTGCGTG
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC-CCTCTGCGTG
* * * * * *
17753028 CTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTTGGATCTTAGACTGGGAATGAACTCCGTGTG
584 CTGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
17753093 CCTAAGCCAACCGACGAAA-CAAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGAC-GGATGCG
648 CCTAAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
17753156 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
713 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* * *
17753221 CCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTACGCCTTGACGTGAAGTTTCATGGC-A
778 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
17753285 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
843 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
*
17753339 TTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
17753404 TGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAATATTTTGTGACTATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
17753469 AGTGTCCCCATTTCAGACACTTGAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
17753534 TAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGTCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
17753598 CACCCATCACACATCATGTGCGCACACCTCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
261 CACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * ** * **
17753663 CCGGTCAGGTTCTCCGGCGATGCTACGACGATGGTGCCCCGATTAAAAAAAATATGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
*
17753728 CATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
17753792 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* *
17753857 GCGCTCAGCCGACCAGAGGGGC--GATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
** * * * *
17753920 TGCCGATCCTGCTGTTGCGACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
17753985 CTAAGCCAACCGACGAAA-TGAACGGGCGGGCGATCGGGCGGGCACTACGCCGGCCAGAGAGACA
649 CTAAGCCAACCGACAAAAGTG-A---GC-GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACG
* ** *
17754049 GGATGCGCAAGCCGTGGATCGGTAGGGTGACAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
706 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* *
17754114 GCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTC
771 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
17754179 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATT
836 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
17754240 TTTTAAAATTTTTTCGAAAGGGGTTTT-GCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17754304 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
17754369 AGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
17754434 TAAGGGGGTATGAGTTCTTGAGGTTTGATGATGGATAGGAGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
17754499 CACCCATTGCACATCATGTGCGCAAACCCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCTGT
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *
17754564 CGATCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCA
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCA
** * ** *
17754628 CATGCCCGAGCCCAGCATGTGCTGCCGTTACCCTCGGTCTGGTTTGATCTTAGACTAGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
17754693 CTCCTTATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** * *
17754758 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCACTGCATGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* ** * * *
17754823 TACCGATCCTGCTGCCGTGACCTTCATTCCGG-TCTGATCTTAGACTAGGAATGAACTCCGTATG
585 TGCCGATCCTGCTGCCGCAACCCTCGTT-CGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * *
17754887 CCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGAT
648 CCTAAGCCAACCGA-CAAA--AGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** * * ***
17754952 GCGCAAATCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCA
710 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* *
17755017 ATGCCATTTTTATGGCTTCTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGG
775 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** * * *
17755082 CAAGACGACTCATTTTCAATTTTTCACAATTTTTAAAATTTTTTACGGTTTGGGATT
840 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
*
17755139 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17755204 TGGCATGCACAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
17755269 AGTGTCCACATTTAAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGGTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
17755334 TCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCGG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *** * * *
17755399 CACCCATCTCACATTATGTGCTTGCA-CCCCTCGGTCCCCCCGATCGCCGGAACCCCAATGCCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *
17755463 CGGTCAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* *
17755528 ATGTCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * *
17755593 TCCCTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGC
456 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
17755658 CGCTCAGCCGGCCAAAGGGGCAGGATGAGCAAGCCGAGGATCGATCGAGTCCCCCTCTGCGTGCT
521 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * * * * * *
17755723 ACTGATCCTCCTGCCGTAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATAC
586 GCCGATCCTGCTGCCGCAACCCTC-GTTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
17755787 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTATCCAGGCACTACGCCGGGCAGACAGACAG
649 CTAAGCCAACCGAC-AAA--AGTGAGCGGGCGGG----CGGGCACTACGCCGGCCAGAGAGACGG
* * * * * *
17755852 GAAGCGCAAGTCGTGGATCGATAAGGTGGTAGGTGAGTTTGGGCACATCTTCATATTTCTTCATG
707 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
* *
17755917 CCAATGCCATTTTTAAGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCA
772 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
17755982 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGGTTTGGGATT
837 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
17756042 TTTTAAAATCTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17756107 TGGCATGCAAAAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCA-TTGAAAA
66 TGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
17756171 AAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATCCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
17756235 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
17756300 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCTCGATCGCCGGAACCCCAACGCTG
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * ** * ** **
17756363 TCGGTCAGGTTTTTCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* ** ** *
17756428 CATGCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
17756493 CTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * * *
17756558 GCGTTCAGCCGACCAGAGGGGCAGGATACGCAAGTCGGGGATCAGTCGGGTCCCTCTCTGTGTGT
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* **
17756623 TGCTGATCCTGCTATCGCAACCCTCAG-TCTGG-TCAGATCTTAGACTGGGAATGAA-TCCGTAT
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTC-GGTTC-GATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17756685 GCCAAAGCCAACAGACGAAACGAGCG-GACGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGG
647 GCCTAAGCCAACCGAC-AAA--AGTGAG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
*
17756749 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
708 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
17756814 CAATGCCATTTTTGTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
773 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
17756879 GGCAAGACGACTCGTTTTCTATTTTGCATGATTTTTGAAACTTTTTACGGTTCGGGATT
838 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
** * * *
17756938 TTTTAAAATTTTTTTTGAAGGAGTTTTGGCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17757003 TGGCATGCAC------A-T-A-CT-----C-C-AAATGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
17757052 AATGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTTTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** *
17757117 TAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
17757182 CACCCATCGCACATCATGTGC-CACA-CCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGT
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *** * **
17757245 CGGTCAGGTTCTCCGGTGATGCTTCGATTATGGTGCCTC-AGCGAAGAAAAATGTAGCACCAGCA
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCA
** * ** * * * *
17757309 CATGCTTGAGCCCAGCATGTGCGGTTGCAACCCTCGGTTCGGTCTGATTTTATACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
*
17757374 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCGTGCG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCG
* * * * * **** *
17757439 AGCACTCAGCTGGCCAGAGGGGTGGCATGCGCAAGTCC-GGGATCGG-CTGGGTATGACTCTGCA
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGGATCGGTC-GGGTCCCCCTCTGCG
* * * * * *
17757502 TGCTGTCGATCTTACTGCCGGAACCCTCGGTCTGG-TCAAATCTTAGACTGGGAATGAACT-CGT
582 TGCTGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTC-GATCTTAGACTGGGAATGAACTCCGT
*** * * ** *
17757565 ATGCCTAAGCCAATTAATTGAAACGACTTGCGGGCAGGCGGGCGACCGGGCACTACGGCCGGCCT
645 ATGCCTAAGCCAACCGA--CAAA--A-----GTG-A-GCGGGCGGGCGGGCACTAC-GCCGGCCA
* * *
17757630 GAGAGACGGGTATGCGCAAGCCGTGGATAGATAGGGTGGTTGTTGCGGTTTTAGGCACATCTTCA
698 GAGAGACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG-GG-TTTAGGCACATCTTCA
* *
17757695 TATTTCTACGTGCCAAATACCATTTTTATGGCTTGGTAAA-TCATACAATGG-CCCTTAAGCCTT
760 TATTTCTACATGCC-AATGCCATTTTTATGGCTT-GTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17757758 CACGTGAAGTTTCATGGCAAGATGACCTCATTTTCTA-TTTTCATGA-TTTTGAAA-GTTTT--G
823 CACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
17757818 TGTGTC-GGA-T
887 -GT-TCGGGATT
* * * * * * * * *
17757828 TTTTAAGGATTTTTTCGAAAGAGGATTTTTTGGTCCCAAGCTTTGTATATGTTGATGCTTGTATT
1 TTTTAA-AATTTTTTCG-GA-AGGA-GTTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATT
* * *
17757893 TTTGTTGGCATGCACAAAAAGATTCAACT-AAAACTCGAAGTGTACAAGATTTTGTTACCATTTG
61 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
17757957 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
126 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
17758022 CTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
191 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
17758087 ACCAGCACCCATTGCACATCATGTGCGCACACCCCCCACGG-CCCCTCGATCGTCGGAACCCTAA
256 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAA
* * *
17758151 TGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
320 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
17758216 CAGCACATTCCTGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCC-G---G-TC-----C-----
385 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
17758266 ----A------ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
450 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
17758320 TGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGAGGATCGGCCAGGTACCCCTCTA
515 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
** * * * * *
17758385 CGTGCTGCCGATCCTGCTGCCATAACCCTCGATCCGATCAAATCTTAGACTGTGAATGAACTCCG
580 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGTTCGGTTC-GATCTTAGACTGGGAATGAACTCCG
** * * * *
17758450 TATGCCTAAGCCAACTAACGAAACGAGCGGGCAGGAGGGCGGGCGGGCACTACGCCTGCCAAAGA
644 TATGCCTAAGCCAACCGAC-AAA--A--GTG-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
17758515 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCT
702 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
17758580 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
767 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * *
17758645 TTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCGAAACTTCTTATGGTTTGGGATT
832 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
*
17758710 TTTTAAAATTTTTTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
1 TTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
17758774 TTGGCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
17758839 AAGTGTCCCCATTTCAGACACTTTAATTGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
17758904 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
17758969 GCACCAATCGCACATCATGTGCGCACACCCCCCGGGGCCCCCCGATCGTCGGAACCCCAATGCCA
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * * * * * *
17759034 CCGATCAGGTTCTCCGACGATACTCCGACGATAGTGCCTCGACAAAGAAAAATACGGCACCAACA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * * *
17759099 CATACGCTAGCCCATCATGTGCTGCTGCAA--C-C-AT-C-G---G-TC-----C--GG--TG--
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
17759143 -T--G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
17759203 GCGCTCAGCCAGCCAGATGGGCGGGATGCGCAAGCCGGGGATCAGTCGGTTCCACCTCTACGTGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * * * * *
17759268 TGCAGATCCTACTACCACAACCCTCAGTCCGG-TCTGACCTTACACTGGGAATGAACTCTGTATG
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17759332 CCGAAGCCAACCGACGAAAG-GGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATTCG
648 CCTAAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
17759396 CGAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATG
713 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* * *
17759461 CCATTTTTATGGCTTGCAAATTCATGCAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAA
778 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17759526 CATGACTCGTTTTCTATTTTTCATGA-TTTTCACAAC-TTTTACAGTTCGGGATT
843 GACGACTCGTTTTCTATTTTTCATGATTTTTGA-AACTTTTTACGGTTCGGGATT
* *
17759579 TTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17759644 TGGCATGCACAAAAAAATCCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
17759709 AGTATCCCCATTCCGGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
17759774 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAA
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
17759839 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCG
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCG
* * * *
17759903 CCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAAAGCGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * ** * *
17759968 CATGCCCAAGCCCAACATGTTTTGCCGAAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * ** *
17760033 CTCTGTATGCTTAGACTGGGAATGAACTCCATATGGCTAAGTCAACGCGTGAAATGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
17760098 GCGCTCAGCAGGCCAGAGGGGCCGGATGCACAAGCCAGGGATCGGTCGGGTCACCCTCTGCATGC
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
** *** * *
17760163 TGCCGATCCTTTTATTGCAACCCTCGGTTTGG-TCTGATCTTAGACTGGGAATGAACTCTGTATG
585 TGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17760227 CCTAAGCCAATCGACAAAACGAGCAGGCGGGCAGGCGGGCGGCACTACGTCGGCCATAGAGACGG
648 CCTAAGCCAACCGACAAAA-GTG-A-GCGGGC-GG-GCG-GGCACTACGCCGGCCAGAGAGACGG
* * * *
17760292 GATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGTACATCTCCATATTTCTACATG
707 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
*
17760357 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCA
772 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** *
17760422 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATT
837 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
17760482 TTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17760547 TTGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
17760612 AGTGTCCCAATTTGAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
17760677 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAAAATAAGGGCCAAGTACCAC
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
17760742 CACCCATCGCACATCATGTGCGCACACCAACCCCTGGCCCCCCCGATCTTTGAAACCCCAATGCC
261 CACCCATCGCACATCATGTGCGCACACC--CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
** * * * *
17760807 ATCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTG-CCCTACGAAGAAAAATGTGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
17760871 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
17760936 ACTCCGTATGC-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
17761000 GGCACTCAGCCGGCCAGAGGGGCGGGACGCGCAAGTCGGGAATCGGCCGGGTTCACCTCTACGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* *
17761065 CTGTCGATCCTGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17761130 CCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACCACGCCGACCAGAGAGACG
648 CCTAAGCCAACCGAC-AAA--AGT----GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
17761195 GG-TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACTT
706 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * *
17761259 TCCAATGCCATTTTTATGGCTTTTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
771 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* **
17761324 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATT
836 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
17761385 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
17761450 TCGCATGCCCAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
17761515 AGTGTCCCAATTTGAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
17761580 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAAAATAAGGGCCAAGTACCAC
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
17761645 CACCCATCGCACATCATGTGCGCACACCAACCCCTGGCCCCCCCGATCTTTGAAACCCCAATACC
261 CACCCATCGCACATCATGTGCGCACACC--CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
** * * * *
17761710 ATCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTG-CCCTACGAAGAAAAATGTGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
17761774 ACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * *
17761839 ACTCCGTATGC-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCATGTG
454 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
17761903 GGCACTCAGCCGGCCAGAGGGGCGGGACGCGCAAGTCGGGAATCGGCCGGGTTCACCTCTACGTG
519 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* *
17761968 CTGTCGATCCTGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
584 CTGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17762033 CCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACCACGCCGACCAGAGAGACG
648 CCTAAGCCAACCGAC-AAA--AGT----GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
17762098 GG-TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACTT
706 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * *
17762162 TCCAATGCCATTTTTATGGCTTTTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
771 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** *
17762227 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATT
836 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
17762288 TTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17762353 TTGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
17762418 AGTGTCCCAATTTGAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
17762483 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCATGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
17762548 CACCCATCGCACATCATGTGCGCACACCCGCCCCCCGACCCCCCCGATCGTCGAAACCTCAATGC
261 CACCCATCGCACATCATGTGCGCACA--C-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
* * * * * *
17762613 CGTCGATCAAGTTCTTCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG
323 CGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * * * * *
17762678 CACATGCTCGAGCCTAGCATGTGCTGCTGTAAACCTCAGTCCAGTCCGATCTTAGGCTGGGAATG
388 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
* * *
17762743 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-TCAACCCACGAAATGAGCAT-A
453 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * **** * *
17762806 GGGCGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCAGGGATTAAACGGGTCCCCTTCTACGT
518 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* * * * * * * *
17762871 GCTTCCAATCCTGCTACTGCAACCCTCGGTTCGATCCTATCTTAGATTGGGAATGAACTCCGTAT
583 GCTGCCGATCCTGCTGCCGCAACCCTC-GTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17762936 GCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGACGGGTGGGCGGGCACTACGTCGGCCAGAG
647 GCCTAAGCCAACCGAC-AAA--AGTGAGC--G-GG-C----GGGCGGGCACTACGCCGGCCAGAG
* * *
17763001 AGATGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTC
701 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * ** *
17763066 TGCGTTTCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
766 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
17763131 GTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGAT
831 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
17763196 T
896 T
* * * * *
17763197 TTTTAAAATTGTTTCGGAAGGAGTTTTGGCCCCAATCCTAGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17763262 TGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
17763327 AGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAATCTCAAATGCTCT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCT
* *
17763391 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
17763456 GCACCAACCACACATCATGTGCGAACA-CCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCG
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
17763520 TCGGTCAGGTTCTCCGACGATGCTTCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * ** *
17763585 CATGCTCGAGCCCAGCATGTGCT---G------TTGGAAC---CC--TC--AGTCT----A-G--
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
17763627 -TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGTAACGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *
17763689 GTGCTC-GCCCTGCCAGA-GGG-GGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTTTGCATA
520 GCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * ** * *
17763751 TTGTCGATCCTGATGCTGCAACCCTTGACCTGG-TCTGATCTAAGATTGGGAATGAACTCCGTAT
584 CTGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTC-GATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17763815 GCCTAAGCGAACCGATGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGGCCAAAGAGAC
647 GCCTAAGCCAACCGA-CAAA--AGTGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
17763880 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGCACATCTTCATATTTCTACA
705 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
*
17763945 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTT
770 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
*
17764010 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
835 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
17764072 TTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTTATGCTTGTATTTTT-T
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17764136 TGGCATGCATAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
17764201 AGTATCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
17764266 TGAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 T-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
17764330 GCACCCATCGCACATCAAGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCA
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* ** ** * *
17764394 CCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCTTGGTGAAGAAAAATGCAGTACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * * * *
17764459 CATGCTCGAGCCCAGCATGTGCTGCTGCAGCCATCGATCCGATCCGATCTTAGACTGGGAATAAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
** * *
17764524 CTCCGTACACTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ** * * * *
17764589 GCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCAGGGATCGACCGGGTCCCCCTTTACGAGT
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * *
17764654 TGCTGATCCTGTTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
585 TGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
17764719 CTAAGCCAACCGAC-GAA---A-CGGGCGGGCGGGCACTATGTCGGTCGGAGAGACGGGATACGC
649 CTAAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
17764779 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGC
714 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
17764844 CATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAG----C-C-------TTCATGGCAAG
779 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
17764897 ACGACTCGTTTTCTATTTTTCACGATGTTTAAAACTTTTTACGGTTCAAGATT
844 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
17764950 TTTTAAAATTTTTTCGAAAAGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
17765014 TGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
17765079 AGTGTCCCCATTTCAGACACTTTAATGGCTAC-AGCTAGCAAACCTGTAAAATCTCAAATGCTCT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCT
* * *
17765143 TTAAAGGGGTGTGAGTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * ** **
17765208 GCACCCATAGCACATCATGTGCGTACACCCCCCCTGACCCCCCGATCGTCGGAACCGTAACACCG
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
*
17765273 CCGGTCAGGTTCTCCGGCGATGCT-C--C---GGT--------GAAGAAAAATACGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * ** *
17765324 CATGCCCGAGCCCAGCATGTGCTACCGTAATGCTCGGTCCGGTCCGTTCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
** * * * *
17765389 CTTTGTTTGCTTAGACTGGGAATGAACTCCG-ATGCCTACGTCAACCCACGAAATGAGCGCGCGG
455 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * * *
17765453 GCGCTCAATCGGCCAGAGGGGCGGGATGCACAAGTCAGGGATTGGCCGGGTCCCCCT-T---T--
520 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * *
17765512 T--CG----TGTTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
585 TGCCGATCCTGCTGCCGCAACCCTCGTTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
17765571 CAAAGCCAACAGACGAAA-TGAGCGGGCGGACGGGCGGGCACTACGTCAGCCGGAAAGACGGGAT
649 CTAAGCCAACCGACAAAAGTGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
17765635 GCG
710 GCG
17765638 AACCAGCTCA
Statistics
Matches: 15491, Mismatches: 1811, Indels: 724
0.86 0.10 0.04
Matches are distributed among these distances:
852 65 0.00
853 2 0.00
855 1 0.00
856 2 0.00
858 2 0.00
859 2 0.00
860 32 0.00
863 1 0.00
864 81 0.01
865 183 0.01
866 2 0.00
868 2 0.00
869 525 0.03
870 183 0.01
871 4 0.00
872 2 0.00
873 17 0.00
874 319 0.02
875 369 0.02
876 412 0.03
877 117 0.01
878 846 0.05
879 232 0.01
880 85 0.01
881 365 0.02
882 150 0.01
883 316 0.02
884 186 0.01
885 142 0.01
886 74 0.00
887 9 0.00
888 215 0.01
889 237 0.02
890 199 0.01
891 519 0.03
892 570 0.04
893 23 0.00
894 298 0.02
895 902 0.06
896 277 0.02
897 20 0.00
898 208 0.01
899 720 0.05
900 894 0.06
901 561 0.04
902 537 0.03
903 2389 0.15
904 611 0.04
905 295 0.02
906 188 0.01
907 184 0.01
908 181 0.01
909 437 0.03
910 171 0.01
911 5 0.00
912 118 0.01
913 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
GCCGATCCTGCTGCCGCAACCCTCGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACAAAAGTGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
Found at i:17753811 original size:26 final size:26
Alignment explanation
Indices: 17753775--17753827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17753765 TCGGTCCGAT
*
17753775 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17753801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17753827 C
1 C
17753828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17756505 original size:26 final size:26
Alignment explanation
Indices: 17756476--17756528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17756466 CCAATCTGAT
*
17756476 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17756502 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17756528 C
1 C
17756529 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17760067 original size:26 final size:26
Alignment explanation
Indices: 17760016--17760067 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17760006 TCGGTCCGAT
**
17760016 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17760042 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17760068 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17760956 original size:25 final size:25
Alignment explanation
Indices: 17760922--17760971 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
17760912 GGTCTGATCT
17760922 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17760947 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17760972 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCCGTATGC
Found at i:17761859 original size:25 final size:25
Alignment explanation
Indices: 17761825--17761874 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
17761815 GGTCTGATCT
17761825 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17761850 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17761875 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCCGTATGC
Found at i:17762757 original size:26 final size:26
Alignment explanation
Indices: 17762728--17762780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17762718 CCAGTCCGAT
*
17762728 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17762754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17762780 C
1 C
17762781 CTAATCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17765730 original size:26 final size:26
Alignment explanation
Indices: 17765694--17765746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17765684 CCAATCTGAT
*
17765694 CTTAGATTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
17765720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17765746 C
1 C
17765747 CTAAAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17765927 original size:333 final size:320
Alignment explanation
Indices: 17765317--17765929 Score: 726
Period size: 322 Copynumber: 1.9 Consensus size: 320
17765307 AAAATACGGC
** ** *
17765317 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAATGCTCGGTCCGGTCCGTTCTTAGACTGG
1 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAACCTCGGTCCAATCCGATCTTAGACTGG
* ** * *
17765382 GAATGAACTTTGTTTGCTTAGACTGGGAATGAACTCCGATGCCTACGTCAACCCACGAAATGAGC
66 GAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGATGCCTAC--AAACCCACGAAATGAGC
* * *
17765447 GCGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCACAAGTCAGGGATTGGCCGGGTCCCCCTTT
129 GCACGGGCGCTCAATCGGCCAGAGGGGCGAGATGCACAAGTCAGGGATCGGCCGGGTCCCCCTTT
* * * * *
17765512 TCGTGTTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGC
194 TCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGC
17765577 CAACAGACGAAATGAGCGGGCGGACGGGCGGGCACTACGTCAGCCGGAAAGACGGGATGCGA
259 CAACAGACGAAATGAGCGGGCGGACGGGCGGGCACTACGTCAGCCGGAAAGACGGGATGCGA
* ** * * * * *
17765639 ACCAGCTCATGCCTTAGCCCAGCATGTGCTGCTGTAAACCTCTGTCCAATCTGATCTTAGATTGG
1 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAACCTCGGTCCAATCCGATCTTAGACTGG
*
17765704 GAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AAACCCATGAAATGAGCG
66 GAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCG-ATGCCTACAAACCCACGAAATGAGCG
* * * * *
17765768 TACGGGCGCT-TAGCTGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGGCCGGGTCCTCCCTC
130 CACGGGCGCTCAATC-GGCCAGAGGGGCGAGATGCACAAGTCAGGGATCGGCCGGGT-C-CCC-C
**
17765832 TGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTC
191 T---T--T-----TCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTC
* * *
17765897 CGTATGCCTAAGCCAACCGATGAAATGAGCGGG
246 CGTATGCCAAAGCCAACAGACGAAATGAGCGGG
17765930 GGGATGGGGT
Statistics
Matches: 239, Mismatches: 37, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
319 2 0.01
320 61 0.26
321 1 0.00
322 89 0.37
323 9 0.04
326 1 0.00
328 1 0.00
333 75 0.31
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (320 bp):
ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAACCTCGGTCCAATCCGATCTTAGACTGG
GAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGATGCCTACAAACCCACGAAATGAGCGC
ACGGGCGCTCAATCGGCCAGAGGGGCGAGATGCACAAGTCAGGGATCGGCCGGGTCCCCCTTTTC
CTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCA
ACAGACGAAATGAGCGGGCGGACGGGCGGGCACTACGTCAGCCGGAAAGACGGGATGCGA
Found at i:17770099 original size:26 final size:26
Alignment explanation
Indices: 17770070--17770122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17770060 CCAAGCCGAT
17770070 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
17770096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
17770122 C
1 C
17770123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:17770324 original size:12 final size:12
Alignment explanation
Indices: 17770303--17770337 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
17770293 GATGAAACGA
17770303 GCGGGCGGGCAG
1 GCGGGCGGGCAG
*
17770315 GCGGGTGGGCAG
1 GCGGGCGGGCAG
17770327 GCGGGCGGGCA
1 GCGGGCGGGCA
17770338 CTACGTCGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.23, G:0.66, T:0.03
Consensus pattern (12 bp):
GCGGGCGGGCAG
Found at i:17771878 original size:25 final size:25
Alignment explanation
Indices: 17771845--17771900 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
17771835 CTCCGTCTGA
17771845 TCCG-ATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
*
17771869 TCCGTATCTTAGATTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
17771894 TCCGTAT
1 TCCGTAT
17771901 GCCTAAGCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (25 bp):
TCCGTATCTTAGACTGGGAATGAAC
Found at i:17772672 original size:732 final size:726
Alignment explanation
Indices: 17771199--17772621 Score: 2070
Period size: 732 Copynumber: 1.9 Consensus size: 726
17771189 GAGCGAGCGG
* *
17771199 GCGGGCGGGCGGGCACTACGTCAGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGG
1 GCGGGCGGGCGGGCACCACGCCAGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGG
* *
17771264 TAGGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTC
* *
17771329 ATACAATGGTCCCTCAAGCCTTCACATGAAGTTTGATGGGAAGACAACTCGTTTTTTATTTTTCA
131 ATACAATGGTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCA
*
17771394 CGATTTTTGAAACTTTTTACGGTTCGAGATTTGTTAAAATTTTTTCGGAAGAAGTTTTCAACCCA
196 CGATTTTTGAAACTTTTTACGGTTCGAGATTTGTCAAAATTTTTTCGGAAGAAGTTTTCAACCCA
* * *
17771459 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
261 AACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATACAAAAAAAAATTCAGCTAAAAACTCGA
* * *
17771524 AGTGTACAGGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
326 AGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTA
17771589 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
391 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
*
17771654 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGG
456 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCTGG
* * * * *
17771719 CACCCCCAGATCGTCGAAACCCTAGTGCCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCGGTGAA
521 CACCCCCAGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCCCGGCGAA
* *
17771784 GAAAAATGCGGCACCAGCACGTGCCCAAGCCCAACATGTGCTGCCGTAACCCTCCGTCTGATCCG
586 GAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAACCCTCCGTCAGATCCG
* *
17771849 ATCTTAGACTGGGAATGAACTCCGTATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
651 ATCTTAGACTGGGAATGAACTCCGTATCTTAGA---GG-ATCAACTCCG-ATG-C-AAGACAACC
* **
17771914 GACGAAACTAGCGGGTAA
709 GACGAAACTACCGGCAAA
* * *
17771932 GCGGGCGGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
1 GCGGGCGGGCGGGCACCACGCCAGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGG
* *
17771997 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTCTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTC
* *
17772062 ATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCGTTTTTTATTTTTCA
131 ATACAATGGTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCA
* * * * ***
17772126 TGATTTTTGAAACTTTTTGCGGTTTTG-GAATTT-TCAAAATTTTTTTCGG-AGGAGTTTTGGCC
196 CGATTTTTGAAACTTTTTACGG-TTCGAG-ATTTGTCAAAA-TTTTTTCGGAAGAAGTTTTCAAC
* *
17772188 CCAAACTTGGTAGACGTGATCATTTTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACT
258 CCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATACAAAAAAAAATTCAGCTAAAAACT
* *
17772253 CGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
323 CGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
* *
17772318 CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
388 CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAA
* *
17772383 GGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC
453 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCC
* * *
17772448 TGGC-CCCCCTGATCGCCGGAACCCCAATGCCGTC-GTCAGGTTTTTCGGCGATGCTCCGACGAT
518 TGGCACCCCCAGATCGCCGAAACCCCAATGCCGCCGGTCAGG---TT---C--T-CT--GACGAT
* * * *
17772511 GGTGCCTCGGCGAAGAAATATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
572 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAACC
*
17772576 CT-CGATCCAG-TCCGATCTTAGACTGGGAATTAACTCCGTATGCTTA
637 CTCCG-T-CAGATCCGATCTTAGACTGGGAATGAACTCCGTAT-CTTA
17772622 AGTCAACCCA
Statistics
Matches: 622, Mismatches: 51, Indels: 25
0.89 0.07 0.04
Matches are distributed among these distances:
730 6 0.01
731 24 0.04
732 315 0.51
733 168 0.27
736 1 0.00
738 1 0.00
739 2 0.00
740 2 0.00
741 97 0.16
742 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (726 bp):
GCGGGCGGGCGGGCACCACGCCAGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTC
ATACAATGGTCCCTCAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCA
CGATTTTTGAAACTTTTTACGGTTCGAGATTTGTCAAAATTTTTTCGGAAGAAGTTTTCAACCCA
AACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATACAAAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTA
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCTGG
CACCCCCAGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCCCGGCGAA
GAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAACCCTCCGTCAGATCCG
ATCTTAGACTGGGAATGAACTCCGTATCTTAGAGGATCAACTCCGATGCAAGACAACCGACGAAA
CTACCGGCAAA
Found at i:17774374 original size:26 final size:26
Alignment explanation
Indices: 17774338--17774393 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17774328 CCGGTCAAAT
17774338 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17774364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17774390 CTTA
1 CTTA
17774394 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17774398 original size:885 final size:885
Alignment explanation
Indices: 17771874--17781555 Score: 4799
Period size: 899 Copynumber: 10.8 Consensus size: 885
17771864 TGAACTCCGT
17771874 ATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGTAAGCGGGC
1 ATCTTAG-TCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G--AGCGGGC
* * * * **
17771938 GGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
57 GGGCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTG
* * * *
17772003 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTCTAAATTCATACAA
122 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAA
* * * *
17772068 TGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTT
187 TGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* ** * * *
17772132 TTGAAACTTTTTGCGGTTTTGGAATTTTCAAAATTTTTTTCG-GAGGAGTTTTGGCCCCAAACTT
251 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGA-TTTTGGCCCCAAACTT
* * * * *
17772196 GGTAGACGTGATCATTTTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGT
314 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGT
* * *
17772261 ACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGC
379 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17772326 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
444 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGG
**
17772391 TGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCC
508 -GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-GGCCCCC
* * * * *
17772456 CTGATCGCCGGAACCCCAATGCCGTC--GTCAGGTTTTTCGGCGATGCTCCGACGATGGTGCCTC
571 C-GATCGTCGGAACCCC-ATGCCGTCGAGTCAGGTTCTTC-GCGATGCTCTG-GGAT-GTGCCCC
* * * * * *
17772519 GGCGAAGAAATATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC----T-C
631 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCC
*
17772579 -G----ATC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATTAACTCCGTATGCTTAA
696 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAA
* * *
17772623 GTCAACCCATGAAACGAGCGTGCGGG-AGCTCAACCGGCCAAAGGGGCGGGATGTGCAAGTCGAG
761 GTCAACCCATGAAACGAGCGTGCGGGCA-CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG-G
* *
17772687 GATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTC-GTCCGATCTG
824 GATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* * *
17772748 ATCTTCGTCTGGGAATGAACTCCGCATGCCTAAGCCAACCGACAAAACGCACGGGCGGGTGGGCG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GC----GGGCG
* *
17772813 TGCGGGCACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTG
58 GGCGGGCACTAC-ACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTG
17772877 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAA
122 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAA
*
17772942 TGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
187 TGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * **
17773007 TTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTTGGAATCTG-TTTTGGCCCCAAACTT
251 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAA-AGGATTTTGGCCCCAAACTT
* * * *
17773071 GGTAGACATGATCCTTGTATTTTTGTTGGCGTGCGTAAAACAATTCAGCTAAAAACTCAAAGTGT
314 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGT
*
17773136 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGC
379 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
17773201 AAACTTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGG
444 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATA-G
*
17773266 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCC
507 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGG-CCCCC
* * * *
17773331 CGATCGCCGGAACCCTAATGCCGTCG-GTCAGGTTC-TC-CG--G---T--GA--TGCTCCGACA
571 CGATCGTCGGAACCC-CATGCCGTCGAGTCAGGTTCTTCGCGATGCTCTGGGATGTGCCCCGACG
* * * *
17773384 AAGAAAAATATGGCACCAACACATGCCCAAGCCTAGCATGTGCTT-CTGCAACCCTTGGTCCGGT
635 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG-TTGCTGCAACCCTTGGTCCGGT
* * * * *
17773448 CCGATCTTAGACTGGTAATGAACTCCGTATGCTTACACTTGGAATGAACTCCGTATGCCTAAGTC
699 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTC
* * * *
17773513 AACCCACGAAACGAGCGTACGGGCACTCAACCGACCAGAGGGGCAGGATGCGCAAGCCGGGAATC
764 AACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGG-ATC
* * * * * * * *
17773578 GGCCAGGTCCCCCTCTACGTGCTACCAATCCTGCTGCCGCAACCCTCAATCCGGTCTA
828 GGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* * *
17773636 ATCTTAGACTGTGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * **
17773701 CTACACCGGTCAGATAGACGGGATACGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGGGTTTAGGC
* * *
17773766 ACATCTTCATATTT-TCACATTCCAATGCCATTTTGATGGCTTGT-AATTC-TACAATGGTCCCT
131 ACATCTTCATATTTCT-GCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCT
*
17773828 TAAGCCTTC-CGTAAGTTTCCAT-GC-AGACGA-TCGTTTTCT-TTTTTCACGATTTTTTGAAAC
195 TAAGCCTTCACGTAAGTTT-CATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTTGAAAC
* * * ** *
17773888 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGACCAAAAC-AAGT-GATGT
258 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTGGCCCCAAACTTGGTAGACGT
* * * *
17773951 GATGCC-TGTA-TTTTGCTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AGA-T
323 GAT-CCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
17774012 TTGTGACCCAGTTG-AAAAAGTGTCCCCATTTCAGACACTCTAATGGCTACT-GTAGCAAACCTG
387 TTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
17774075 TAAAATCTTTCAAATGCTTCTTTAATGAGAGTGTGAGTTCTCGAGGTTTGGATGA-GATA-GGGC
451 TAAAATC--TCAAATGC-TCTTTAA-GGGGGTGTGAGTTCTCGAGGTTT-GATGAGGATAGGGGC
*
17774138 CGAAGTATAAGGGCCAAGTACCAG-ACCCATCGCACATCATGTATGCACACCACCGCTGGCCCCC
511 C-AA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC-CC-C-GGCCCCC
17774202 CGATCGTC-GAACCCCATGGCCGTCGAGTCAGGTTCTTCGACGATGCTCTGGCGATGGTGCCCCG
571 CGATCGTCGGAACCCCAT-GCCGTCGAGTCAGGTTCTTCG-CGATGCTCTGG-GAT-GTGCCCCG
* ** *
17774266 ACGAAGAAAAATACGGCACCAGTACATGCTTGAGCCCAGCATGTGTTGTTGCAACCCTTGGTCCG
632 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCG
* *
17774331 GTCAAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAG
697 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAG
* * * *
17774396 TCAACCCATAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGAT
762 TCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGAT
* * ** * *
17774461 CGGTCGGGTCCCCCTCTACATGCTGCCGATCATGCTACAATAGCCCTCAATCCAGTCCG
827 CGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* * *
17774520 ATCTTGGTCTGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-
* **
17774585 TGCGGGCACTACGGCTACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGG
65 -AC-TACAC--CGG-T--CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGG
*
17774650 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
123 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAAT
* * * * *
17774715 GGTCCTTTAAGGCTTCACGTTAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTT
188 GGTCCCTTAAGCCTTCACG-TAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* *
17774780 TAAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGG
252 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGG
17774844 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTAC
316 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17774909 AATATTTTTTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAA
381 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17774974 ACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGGGTTCTCGAGGTTCGATGAGGGATAGGGG
446 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATA-GGG
* *
17775039 GCCAATATAAGGGCCAAGTACCAGCACCCATCCCACACCATGTGTGCACAACCCCCCCGGCTCCC
509 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC-A--CCCCCGGC-CCC
* * * *
17775104 CCGATCGTCGGAACCCCAATACCG-CCAGTCAGGTTCTCCGGCGATGCTCCGGTGATGATGCCCC
570 CCGATCGTCGGAACCCC-ATGCCGTCGAGTCAGGTTCTTC-GCGATGCTCTGG-GATG-TGCCCC
* * *
17775168 GGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCGCAGCATATGTTGCTGCAACCC-T--T--
631 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCC
*
17775228 GG-----TC-----C-----A-G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCTTAA
696 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAA
* ** ** * * ** *
17775272 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCACAGGGGAAGGATGCGCAAACCGGGG
761 GTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCC-GGG
* * * * * *
17775337 ATCGATCGGGTCCCCCTCTACGTGCTGCTGATCTTGCTGTAGCAGCCCTCAGTCCGGTCTG
825 ATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
*
17775398 ATCTTGGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGACGGGCG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AG-CGGGCG
* * * ** ** * ** ** * *
17775463 TGCGGGCACTACACCGG-C-CAGAGA--TG-TGTACAAGATTTTGTGG--CCAT-TTGAAAAAAG
58 GGCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAG---CCGTGGATCGATAGGGCGACAGG
* * * * * * * ** * *
17775520 T--G--T--CCCCAT-TTCAGACACTTTACTG---GCTACTGGCA---GCA-AACCTGTAAAATC
120 TGGGTTTAGGCACATCTTC--ATA-TTT-CTGCATGCCAATGCCATTTTCATGGCTTGTAAATTC
* * *** * * *** * *** ****
17775571 -T-CAAATGCT-CTTTAAG--GGGATGTGAGTTCTCGA-GGTTTGATGAGGGA-----TATGGGG
181 ATAC-AATGGTCCCTTAAGCCTTCACGTAAGTT-TC-ATGGCAAGACGACTCATTTTCTATTTTT
* ** ** ** **** * * **** * * * * * ********
17775625 C-CAACATAAG-GGCCAAGTAC----CAGCACCCATCACACATCATGTGCGCACACCCCCCCCCG
243 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA-AAAT-TTTTTCG-A-A-AGGATTTTG
* * *** * * * * *** **
17775684 GCCCCCCCAA--TCGTCAGAACCCCAATGCCGTTGGTCAGGTTCT-CTGACGATGC-TCCGATGA
303 G--CCCCAAACTTGGT-AG-A-CGTGAT-CC-TT-GT-A-TTTTTGTTGGC-ATGCATAAAACAA
*** **** * * * * ***
17775745 TGGTGC-CCCGA--CGAA--G-A-AA-AATTTG-GCACCA---G--CACA-TG-CCCGAGCCCA-
357 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG-ACCATTTGAAAAAAGTGTCCCCATTTCAG
* ** * ** ** *** *** * * **** * **** * **
17775793 ACA-TGTGCT-GCCACAAGCCTC-GGTCTAGTCGGATCTTAGACTGGGAATGAACTTCGTATGCC
421 ACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCA-AATGCTCTTTAAGGGGGTGTGAG
** * **** * * * *** * * *
17775855 TAAGTCAACCCATGAAACGAGCAT-GCGGGCGC--TCAGT--CGGCCAGAGGGGCGGGATTCGCA
484 T-TCTCGAGGTTTG--ATGAGGATAG-GGGC-CAAT-A-TAAGGGCCA-AGTACCAGCA--CCCA
*** * * * * * *** * * * *
17775915 TGCCGGGGATCGGTCGGGTGC-C-CCTCTGTGTGCTGTCGATCCTGTTGTCACAACCC-T-CAGT
539 T--CGCACATC-AT-GTGTGCACACCCCCG-G-CCCCCCGAT-C-GTCG-GA-ACCCCATGCCG-
* * * * * * * * **
17775976 TTG-GTC-TGATCTTAGACTGGGAATGAACTC-CGTATACCTCAGCCAACCGATGAAACGAGCGA
593 TCGAGTCAGGTTCTT---C-GCG-ATG--CTCTGGGAT--GT--GCC--CCGACG-AA-GA-AAA
**** * * * * * * * * ** ** * ****
17776038 GGGGGGCGCGAGCAC-TACGCCG-GCCAGAGAGACGAGATGC-GCAAGTCGCGGAT-CGATAGGG
642 ATACGGCACCAGCACATGC-CCGAGCC-CAG-CATGTGTTGCTGCAACCCTTGG-TCCGGTCCAA
*** * * * * * ** ** * ***
17776099 TGGCAG-GTGGGTTTAGGCACATCTTCATAT--TTCTACATGCCAATG-CCATTTTTATGGCTT-
703 TCTTAGACTGGG--AATG-A-A-CTCCGTATGCTTAGAC-TGGGAATGAAC-TCCGTAT-GCTTA
* ** * * ** * ** ****
17776159 -GTAAATTCAT-ACAA-TA--GT-C---C-CTTAAGCC-TTCATGTGAAGTTTCATG-GCAAG--
760 AGTCAACCCATGA-AACGAGCGTGCGGGCACTCAA-CCGGCCA-GAGGGGCGGGATGCGCAAGCC
** ** * ** *** * ** *** ** *
17776210 ATGA-C--TC--GT---TTTCTA-TTTTTAATGAT--T--TTCA--A-AACTTTTTGTGGCTCGG
822 GGGATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGG-TC-T
17776259 G
885 G
*** * * * * * * *
17776260 A-CTT--T-TTAAAATCCTGAACTCCGTATGCCTAAGTCAACCTATGAAACTAGCGTGCGGTCGC
1 ATCTTAGTCTGGGAA---TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * ** * * * * * * *
17776321 TCAACGGCAGATGGGGATCGAGCCGATCGATCGGG-TCTCCCTTA--CGT-GCTACGATCGCTGC
63 GC-AC--TACA-CCGG-TC-AG-AGA--GA-CGGGAT-GCGC-AAGCCGTGGAT-CGATAG-GGC
** ** * ** * * ** * *
17776382 G-CAACCCTCAG-TT-GGTC-CAATCTT-AGA-TTGGGAATG--AACT-CC-GTAGCCTAGCCAC
114 GAC-A-GGTGGGTTTAGG-CAC-ATCTTCATATTTCTGCATGCCAA-TGCCATTTTCAT-G--GC
** * * ** * * * * *** *
17776437 CCGTGAA-TGAGT---A-GGTGCCGC-GGAGCAATACCCGCCAGAGAGACGATGCGCAAGCCATG
171 TTGTAAATTCA-TACAATGGT-CC-CTTAAGC-CTTCACG-TA-AGTTTC-ATG-GCAAG--A-C
* * * * * *
17776496 GA-TCAATAGGTTGTAGGTGGGTTTAGCACATCTTCATTATTCGTGCAATCCATTTTTATCGCTT
225 GACTC-AT--TTTCTA--T---TTT---TCA-C--GATT-TT--TG-AA-AC-TTTTTA-CGGTT
** * ** * * ** *
17776560 -GTAAAATTCATACAAGGTCTTAAGCTTTC--ACGTGAATTTCAT-G-CAAAATGACTTGTTATT
269 CG-GGATTTTTTA-AA-AT-TT----TTTCGAAAG-G-ATTT--TGGCCCCAA--ACTTGGTA--
* * ** * * ** *** * * **** *
17776620 TA-TTTTTCACATTTTCAAAATTTTTG-CGGTCA-G-ATTTTTTAATTTTTCCAACGATTTTCCC
318 GACGTGATC-C-TTGT----ATTTTTGTTGG-CATGCA---TAAAACAATT-CAGCTAAAAACTC
* * ** *** * ** **
17776681 CAATTGTGACGTGCCTTGTATTTTTGTG-CC-TCACAAAAAAAT-TCAGCTAAAAACTTGAAATG
372 GAA--GT---GT-ACAAG-A-TTTTGTGACCATTTGAAAAAAGTGTC--C---CCA-TT-TCA-G
* ** * * * ** * * * ***
17776743 TACAAGATTTTGTGACTATTTG-AAAAAAGTGTCCCCATTTCAAACA-CTTTAATTGCTACTGGC
421 -AC-A-CTTTAATGGCTACTGGCAGCAAA------CC-TGT-AAA-ATC-TCAAATGCT-CTTTA
**** * ** * * * * * * *
17776806 AGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGA
472 AG--GGGGTGTGAGTTCTC--GAGGT-TTGATGAGGATAG-G-G-GC-C-A------AT-----A
* * * * ** ** ** * *
17776870 TAGGGGGCCAATATAAGGGACAAGTACCAGCA-CGCATCGCACAT-CATGTGCACACAC--CCCC
516 TA-AGGGCC-----AA-GTACCAGCACC--CATCGCA-C-ATCATGTGTGCACACCCCCGGCCCC
** ** ** * * * * * * * * *
17776931 TGGCCCCCCCGATCGCCGAAACCCCAATGTCGCCG-GTTATGTTCTCCGACGATGCTCCGACGAT
570 CCGATCGTCGGA--ACC------CC-ATGCCGTCGAGTCAGGTTCTTCG-CGATGCTCTG-GGAT
* ** * * *
17776995 GGTACGTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
624 -GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACC
*
17777060 C-T--T--GG--------T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCAT
688 CTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
17777099 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGTGGCGGGATGCGCA
753 ATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCA
* * * * * * ** *
17777164 AGCCGGGGATCAGTCGAGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCTGTCCGA
818 AGCC-GGGATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGG
17777229 TCTG
882 TCTG
** * * * * * *
17777233 ATCTTAGAATGGAAATGAACTCCGTATGCCTAAACCATCTGAAGAAACAAGCGGGCGGGCGACGG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G-CGG
* * * * * **
17777298 GCAGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCAATAGGGTGGTAGG
63 GCA--C---TAC-AC--CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGG
* * * *
17777363 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGACATTTTTATGGTTTGTAAATTCATAC
120 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATAC
* * *
17777428 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCACGAT
185 AATGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * *
17777493 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGCGTTTTGGCCCCAAAC
249 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGG-ATTTTGGCCCCAAAC
* * * *
17777557 TTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AGAG
312 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGA-AG
* *
17777621 TGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCCTTTCAGACACTTTAATGGAC-ACTGG
376 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG-CTACTGG
* * ** * *
17777685 CAACAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGCCAGTTCTCTAGGTTTGATGACTGA
440 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGA
* * ** * * *
17777750 TAGAGGGCCATTATAAGGGCCATGTACCAAAACCCATCTCACATCATGTGCGCACACCCCTCGAC
504 TAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC-CGGC
* * * * * *
17777815 CCCACCGATCATCGAAACCCCAATGCCGTCG-GTCAAGTTCTTCGATGATGCTCCGACGATGGTG
567 CCC-CCGATCGTCGGAACCCC-ATGCCGTCGAGTCAGGTTCTTCG-CGATGCTCTG-GGAT-GTG
* ** *
17777879 CTCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-TCGCAACCC--
627 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCT-GCAACCCTT
* *
17777941 --T-CGG-----TC-----C---G---G---TCCG-AT-CTTAGACTAGGAATGAACTTCGTATG
691 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17777982 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCACAACCGGCCAGAGGGGCGGGATGCGCAAGC
756 CTTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * ** *
17778047 CAGGGATCGGTCGGGTCACCCTCTGCATGCTGCCGATCTTGCTGCCA-CAACCATCGGTCCAGTC
821 C-GGGATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTG-CAGCAGCCCTCAATCCGGTC
**
17778111 CA
884 TG
* * *
17778113 ATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGCG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCG
* * * ** *
17778178 GGCGGGC-ATCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTG
62 GGC--ACTA-CAC--CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTG
* * *
17778242 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAG
122 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAA
17778307 TGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
187 TGGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
** * * *
17778372 TCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
251 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTG
* *
17778437 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
315 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTA
*
17778502 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCA
380 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
17778567 AACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
445 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATA-GG
* *
17778632 GGCCAATATAAGGGCCAAGTACCAGCACTCATCGCATATCATGT-TCGCACACCCCTCCGGCTCC
508 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT-GCACA-CCC-CCGGC-CC
* * ** * * ***
17778696 CCCGTTC-ACGGGAACCCCAATGCCACCG-GTCAGGTTATCCGACGATGCTCCACGATGGTGCCC
569 CCCGATCGTC-GGAACCCC-ATGCCGTCGAGTCAGGTTCTTCG-CGATGCTCTGGGAT-GTGCCC
** * * * **
17778759 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTAAAACCCTTGGTC
630 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTC
* * * *
17778824 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
695 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** ** * * * *
17778889 AGTCAACCCACGGAACGAGCGTAAGGGCGTTCAGCCAGCCAAAGGGGCGGGATGCTCAAGCCAGG
760 AGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCC-GG
* * * * * * * * *
17778954 GATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCGTAACCCTCGATCCAGTCTG
824 GATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* * *
17779016 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGTG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCG
** * * * * ** *
17779081 GGCACTACGTCGGCCAGAGATATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTT
62 GGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGGGTTT
* * *
17779146 AGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTC
**
17779211 CCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAA
192 CCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
17779276 AC-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
256 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGTAGA
* *
17779340 CGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
320 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
17779405 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCT
385 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17779470 ATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
450 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATA-GGGGCCA
* * *
17779535 ATATAAGGGCCAAGTACCAGCACTCATCGCATATCATGT-TCGCACACCCCTCCGGCTCCCCCGT
513 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT-GCACA-CCC-CCGGC-CCCCCGA
* ** * * *** **
17779599 TC-ACGGGAACCCCAATGCCACCG-GTCAGGTTATCCGACGATGCTCCACGATGGTGCCCCGGTG
574 TCGTC-GGAACCCC-ATGCCGTCGAGTCAGGTTCTTCG-CGATGCTCTGGGAT-GTGCCCCGACG
* * * ** * *
17779662 AAGAAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTAAAACCCTCGGTCCGAT
635 AAG-AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCGGT
* * * *
17779727 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
699 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTC
* * ** ** * * * *
17779792 AACCCACGGAACGAGCGTAAGGGCGTTCAGCCAGCCAAAGGGGCGGGATGCTCAAGCCAGGGATC
764 AACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATC
* * * * * * * * *
17779857 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCGTAACCCTCGATCCAGTCTG
828 GGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* *
17779915 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCG
** * * * * ** *
17779980 GGCACTACGTCGGCCAGAGATATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTT
62 GGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGGGTTT
*** *
17780045 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTC
* * * **
17780110 CCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
192 CCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * * *
17780175 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAAATTTGTAGA
256 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGTAGA
* * *
17780240 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-ATATTCAGCTAAAAACTCAAAGTGTACAAT
320 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAACA-ATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
17780304 ATTTTGTGTCCATTTGAAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAAC
384 ATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17780369 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
448 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATA-GGGGC
* * *
17780434 CAATATAAGGGCCAATTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGGGCCCCCCCG
511 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC-C-GG-CCCCCCG
** * * **
17780499 ATCG-CCAAACCCTAATACCG-CTG-GTCAGGTTCACCGGCGATGCTCTGGCGATGGTGCCCCGA
573 ATCGTCGGAACCC-CATGCCGTC-GAGTCAGGTTCTTC-GCGATGCTCTGG-GAT-GTGCCCCGA
** ** *
17780561 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTTTAACCCTCAGTCTGG
633 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCGG
* * * ** *
17780626 TCCAATCTTAGACTAGCAATGAACTCTGTATGCTTAGACTGGGAATGAACTTGGTATGCCTAAGT
698 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* * ** * * * * *
17780691 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGTGGGGTGGGACGGGCAAGCCGGGGAT
763 CAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGAT
* * * ** * * * * * *
17780756 CAGTCGGGTCCCCCTCTGCGTGCTATCAATCCTACTGCTGCAACCCTCGATCCGGTCCG
827 CGGTCGGGTCCCCCTCTACATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
* * *
17780815 ATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACTGACGAAACAAGCAGGCGGGCGGACG
1 ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GC--G-GG-CG
* * ** * * * **
17780880 GGGGGGCACTACGCCGACCAGAGAGACGGCATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
58 GGCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGG
* * * *
17780945 GTTTAGGCACATCTTCATATTTCTACATGCCCATGCCATTTTTATGGTTTGTAAATTCATACAAT
123 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAAT
* *
17781010 GGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
188 GGTCCCTTAAGCCTTCACGT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
** * * ** * * * * *
17781075 CAAAACTTTTTGCAGTTTTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGCCCCCAAAGTAGG
252 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGG
* * * * *
17781140 TGGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTAC
316 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTAC
*
17781205 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAA
381 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
17781270 ACCTATAAAATCGCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTG
446 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGG-G
* * ** ** *
17781335 GCCAATATAAGGGCCAGGTACCAGCACCTAAAGCACATCATGTGCACACACCCCCCGCCCCCCGA
509 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCGA
* * * *
17781400 TCGCCGGAACCCTAATGCCGCCG-GTCAGGTTC-TC-CG--G--C---GATGGTGCCCCGATGAA
574 TCGTCGGAACCC-CATGCCGTCGAGTCAGGTTCTTCGCGATGCTCTGGGAT-GTGCCCCGACGAA
** * * * * *
17781455 GAAAAATGTGGCACTAGCACATGCCTGAGCGCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCC
637 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCT-GCAACCCTTGGTCCGGTCC
17781519 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
701 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
17781556 AGGATGCACA
Statistics
Matches: 6910, Mismatches: 1270, Indels: 1240
0.73 0.13 0.13
Matches are distributed among these distances:
841 2 0.00
842 14 0.00
843 21 0.00
844 17 0.00
845 15 0.00
846 15 0.00
847 9 0.00
848 10 0.00
849 9 0.00
850 15 0.00
851 9 0.00
852 12 0.00
853 24 0.00
854 14 0.00
855 8 0.00
856 9 0.00
857 11 0.00
858 17 0.00
859 34 0.00
860 23 0.00
861 96 0.01
862 11 0.00
863 13 0.00
864 8 0.00
865 2 0.00
866 7 0.00
867 38 0.01
868 58 0.01
869 53 0.01
870 96 0.01
871 61 0.01
872 22 0.00
873 49 0.01
874 264 0.04
875 345 0.05
876 31 0.00
877 597 0.09
878 169 0.02
879 30 0.00
880 400 0.06
881 17 0.00
882 8 0.00
883 11 0.00
884 128 0.02
885 182 0.03
886 27 0.00
887 149 0.02
888 68 0.01
889 8 0.00
890 103 0.01
891 2 0.00
892 94 0.01
893 12 0.00
894 21 0.00
895 6 0.00
896 10 0.00
897 43 0.01
898 421 0.06
899 706 0.10
900 465 0.07
901 280 0.04
902 55 0.01
903 490 0.07
904 346 0.05
905 6 0.00
906 6 0.00
907 8 0.00
908 2 0.00
909 8 0.00
910 2 0.00
911 5 0.00
912 8 0.00
913 3 0.00
914 2 0.00
915 9 0.00
916 6 0.00
917 6 0.00
918 7 0.00
919 5 0.00
920 14 0.00
921 8 0.00
922 2 0.00
923 1 0.00
924 4 0.00
925 2 0.00
928 7 0.00
929 4 0.00
930 9 0.00
931 5 0.00
934 2 0.00
935 1 0.00
936 10 0.00
937 8 0.00
938 10 0.00
939 3 0.00
940 3 0.00
941 2 0.00
942 2 0.00
943 3 0.00
944 3 0.00
945 8 0.00
946 9 0.00
947 19 0.00
948 18 0.00
949 2 0.00
950 2 0.00
951 5 0.00
952 4 0.00
953 9 0.00
954 10 0.00
955 13 0.00
956 12 0.00
957 2 0.00
959 5 0.00
960 4 0.00
961 3 0.00
962 8 0.00
963 8 0.00
964 4 0.00
965 9 0.00
966 7 0.00
967 7 0.00
968 5 0.00
969 1 0.00
970 1 0.00
971 5 0.00
972 3 0.00
973 5 0.00
974 45 0.01
975 30 0.00
976 43 0.01
977 28 0.00
978 12 0.00
979 22 0.00
980 12 0.00
981 9 0.00
982 7 0.00
983 3 0.00
984 9 0.00
985 7 0.00
986 2 0.00
987 11 0.00
988 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
ATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGACAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCGATCGTCGGAACCC
CATGCCGTCGAGTCAGGTTCTTCGCGATGCTCTGGGATGTGCCCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCG
TGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTAC
ATGCTGCCGATCCTGCTGCAGCAGCCCTCAATCCGGTCTG
Found at i:17777880 original size:14 final size:14
Alignment explanation
Indices: 17777857--17777887 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17777847 TCAAGTTCTT
17777857 CGATGATGCTCCGA
1 CGATGATGCTCCGA
*
17777871 CGATGGTGCTCCGA
1 CGATGATGCTCCGA
17777885 CGA
1 CGA
17777888 AGAAAAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (14 bp):
CGATGATGCTCCGA
Found at i:17778563 original size:877 final size:873
Alignment explanation
Indices: 17776470--17784567 Score: 9185
Period size: 877 Copynumber: 9.2 Consensus size: 873
17776460 AGCAATACCC
* * *
17776470 GCCAGAGAGAC--GATGCGCAAGCCATGGATCAATA-GGTTGTAGGTGGGTTTA-GCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
17776531 AT-TATTC-G--TG-CAAT-CCATTTTTATCGCTTGTAAAATTCATACAA-GGT--CTTAAGCTT
66 ATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCT
* * *
17776587 TCACGTGAA-TTTCAT-GCAAAATGACTTGTTATT-TATTTTTCAC-ATTTTCAAAA-TTTTTGC
129 TCACGTGAAGTTTCATGGCAAGACGACTCGTT-TTCTATTTTTCACGATTTTCAAAACTTTTTGC
* *
17776647 GG-TCA-GATTTTTT--AA-TTTTTC-CAACGA-TTTT--CCCC-AA-TT-GT-GACGTG--CCT
193 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
17776697 TGTA-TTTTTGT-GCCT-CACAAAAAAATTCAGCTAAAAACTTGAAATGTACAAGATTTTGTGAC
258 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17776759 TATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
323 CATTTGAAAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
17776823 TCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
387 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
17776888 GACAAGTACCAGCACGCATCGCACATCATGTGCACACACCCC-CTGGCCCCCCCGATCGCCGAAA
452 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GG-CCCCCCGATCGCCGAAA
* * * * **
17776952 CCCCAATGTCGCCGGTTATGTTCTCCGACGATGCTCCGACGATGGTACGTCGACGAAGAAAAATG
515 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* *
17777017 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGA
580 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
17777082 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
644 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCA
* * * * *
17777147 GAGTGGCGGGATGCGCAAGCCGGGGATCAGTCGAGTCCCCCTCTACGTGCTGCCGATCTTGCTGC
709 GAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGC
* * * * * * *
17777212 CGCAACCCTCTGTCCGATCTGATCTTAGAATGGAAATGAACTCCGTATGCCTAAACCATCTGAAG
774 CGCAACCCTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
17777277 AAACAAGCGGGCGGGCGACGGGCAGGCGAGCACTACGTCG
838 AAACGAGC-GG-GGG-G-CGGGCGGGCGGGCACTACGTCG
* *
17777317 GCCAGAGAGACGGGATGCGCAAGCCGTGCATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
17777382 ATATTTTTGCATGCCAATGACATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * **
17777447 ACGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
** * * * *
17777512 TTGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGA
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17777577 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AGAGTGTACAAGATTTTGTGACCA
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCA
* * * * *
17777641 TTTGAAAAAAGAGTCCCCCTTTCAGACACTTTAATGGAC-ACTGGCAACAAACCTGTTAAATCTC
325 TTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGG-CTACTGGCAGCAAACCTGTAAAATCTC
** * ** * *
17777705 AAATGCTCTTTAAGGGGGTGCCAGTTCTCTAGGTTTGATGACTGATAGAGGGCCATTATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ** * * **
17777770 CATGTACCAAAACCCATCTCACATCATGTGCGCACACCCCTCGACCCCACCGATCATCGAAACCC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCC-CCGATCGCCGAAACCC
* * * * * *
17777835 CAATGCCGTCGGTCAAGTTCTTCGATGATGCTCCGACGATGGTGCTCCGACGAAGAAAAATGTGG
518 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
*
17777900 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTA
583 CACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* *
17777965 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCACAACCGGCCAGAG
647 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAG
* * *
17778030 GGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCACCCTCTGCATGCTGCCGATCTTGCTGCCAC
712 GGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGC
* ** * *
17778095 AACCATCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAA
777 AACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
17778160 CGAGCGGGTGGGCGGGCGGGCGGGCA-TCACGTCG
841 CGAGCGGG-GGGCGGGCGGGCGGGCACT-ACGTCG
*
17778194 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
17778259 ATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17778324 ACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
17778389 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17778454 ATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
17778519 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17778584 ATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * * *
17778649 AGTACCAGCACTCATCGCATATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCACGGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCT-CGGC-CCCCCGATCGCCGAAACCCC
* * **
17778714 AATGCCACCGGTCAGGTTATCCGACGATGCTCC-ACGATGGTGCCCCGGTGAAGAAAAATGCGGC
519 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* **
17778778 ACCAGCACATGCCCGAACCCAGCATGTGCTGCTAAAACCCTTGGTCCGATCCGATCTTAGACTGG
584 ACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAACCC----T-CG----G-TC-----C---
*
17778843 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAG
630 G---G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
17778908 CGT-AAGGGCGTTCAGCCAGCCAAAGGGGCGGGATGCTCAAGCCAGGGATCGGTCGGGTCCCCCT
687 CGTGCA-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCT
* * * *
17778972 CTGCGTGCTGCCGATCTTGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACT
751 CTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACT
*
17779037 CCGTATGCCTAAGCCAACCGACGAAACGA---GGGGGCGGGCGGGTGGGCACTACGTCG
815 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGTCG
* * *
17779093 GCCAGAGATATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
17779158 ATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17779223 ACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC-TTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
17779287 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17779352 ATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
17779417 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17779482 ATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * * *
17779547 AGTACCAGCACTCATCGCATATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCACGGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCT-CGGC-CCCCCGATCGCCGAAACCCC
* * **
17779612 AATGCCACCGGTCAGGTTATCCGACGATGCTCC-ACGATGGTGCCCCGGTGAAGAAAAAATGCGG
519 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG-AAAAATGCGG
* **
17779676 CACCAGCACATGCCCGAACCCAGCATGTGCTGCTAAAACCCTCGGTCCGATCCGATCTTAGACTG
583 CACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAA-CC-C--T-CG----G-TC-----C--
*
17779741 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGA
630 GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
17779806 GCGT-AAGGGCGTTCAGCCAGCCAAAGGGGCGGGATGCTCAAGCCAGGGATCGGTCGGGTCCCCC
686 GCGTGCA-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCC
* * * *
17779870 TCTGCGTGCTGCCGATCTTGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAAC
750 TCTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAAC
17779935 TCCGTATGCCTAAGCCAACCGACGAAACGA---GGGGGCGGGCGGGCGGGCACTACGTCG
814 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGTCG
* * *
17779992 GCCAGAGATATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
***
17780057 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17780122 ACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
* * * * *
17780187 TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAAATTTGTAGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
17780252 ATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGTCCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
17780317 TTGAAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
326 TTG-AAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
17780382 AATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
17780447 AATTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGGGCCCCCCCGATCGCC-AAACCC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GG-CCCCCCGATCGCCGAAACCC
* * * * * * * *
17780511 TAATACCGCTGGTCAGGTTCACCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGG
518 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* **
17780576 CACCAGCACATGCCCGAGCCCAGCATGTGTTGCTTTAACCCTCAGTCTGGTCCAATCTTAGACTA
583 CACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAA-CC-C--TC-GGT-C---C---G----
*
17780641 GCAATGAACTCTGTATGCTTAGACTGGGAATGAACTTGGTATGCCTAAGTCAACCCACGAAACGA
631 G---T---C-C-G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * * *
17780706 GCGTGCGGGCGCTCAGTCGACCAGTGGGGTGGGACGGGCAAGCCGGGGATCAGTCGGGTCCCCCT
686 GCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCT
** * * * * * *
17780771 CTGCGTGCTATCAATCCTACTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
751 CTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACT
* * * * * * *
17780836 CCGTATGCCTCAGCCAACTGACGAAACAAGCAGGCGGGCGGACGGGGGGGCACTACGCCG
815 CCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGGGGCGGGCGGGCGGGCACTACGTCG
* * *
17780896 ACCAGAGAGACGGCATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
17780961 ATATTTCTACATGCCCATGCCATTTTTATGGTTTGTAAATTCATACAATGGTGCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
17781026 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
** * * * * *
17781091 TTTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGCCCCCAAAGTAGGTGGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17781156 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
17781221 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCGCAA
326 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
17781286 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * ** * * * *
17781351 GGTACCAGCACCTAAAGCACATCATGTGCACACACCCC-CCGCCCCCCGATCGCCGGAACCCTAA
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGATCGCCGAAACCCCAA
* *
17781415 TGCCGCCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCGATGAAGAAAAATGTGGCAC
521 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * *
17781469 TAGCACATGCCTGAGCGCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
586 CAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * * ** * * * * * * *****
17781534 ATGAACTCCGTATG-CTTAGACTA-GGATG-CACAAGC-T--AGG-GATCGATCGGGTCCCCCTC
650 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTC-AGCCGG-CCAGAGG
* ** * * * * * ** * * * **
17781592 TGCATGCTGC-CGATCC--TG--CTGTC--GT--AACT-TTCG-G-T-CCGGTC-TG-AG-CTTA
713 GGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGCA
** * ** ** * * * *
17781641 GA--CT-GG---GAATGAACTCCGTA-T--GCCT-AA-TCC--A-ACCGATG--AA---ACG-AG
778 -ACCCTCGGTCCGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
17781686 CGGGCGGGCGGGCGGGAGGGCAGGCACTACGTCG
841 CGAGCGGG-GGGCGGGCGGGCGGGCACTACGTCG
*
17781720 GCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
17781784 ATATTTCTGCATGCTAATTCCTTTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
17781849 ACGTCAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTT-AAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
* *
17781913 TCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17781978 ATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
17782043 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
17782108 ATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * *
17782173 AGTACCAGCACTCATCGCATATCATGTGCGTACACCCCCCTGGGCCCCCCCAATCGCCGGAACCC
456 AGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCTCGG-CCCCCCGATCGCCGAAACCC
* * *
17782238 CAATGCCGCCGGTCATGTTCT-C--C-A-G-T-----GATGGTGCCCCGACAAAGAAAAATGCGA
518 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * * * *
17782292 CACCAGCACATGCTCAAGCCCAACGTGTGCTGCCACAACCCTCGGGCCGGTCCGATCTTAGAGTG
583 CACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
17782357 GGAATGAACTTCGTATGCTTAGACTGAGAATTAACTTCGTATGCCTACAAGAAACGACCGTGCAG
647 GGAATGAACTTCGTATGC-----CT-A-AGTCAA---C-----CC-AC--GAAACGAGCGTGCAG
* ** * *
17782422 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCTG-CTGGGTCCCCCTCTGCATG
694 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTC-GGGTCCCCCTCTGCGTG
* ** *
17782486 CTGCCGATAC-TGCTACCGCAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
758 CTGCCGAT-CTTGCTGCCGCAACCCTCGG-TCCGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
17782550 GCCTAAGCCAATCGACGAAAC-A----------AGCGGGCGGGCACTACGCCG
821 GCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGTCG
*
17782592 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *** * * * *
17782657 ATATTTTTATGTGCCAATGCCATTCTTATGGTTTGTAAATTCATACAGTGGTCCTTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* ** *
17782722 ACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
* * * *
17782787 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCAAACTTAGAAGACATGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
17782852 ATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCAT
261 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
17782917 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCAAATGGCGGCAAACCTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17782982 ATGCTCTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGCGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
17783047 AGTACCAGCACCCATCGCACATCATGTTCGCACACCCC-CTGGCGCCCCCGATCGTC-AGAACCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGC-CCCCCGATCGCCGA-AACCC
* * * * *
17783110 CAAAGCCGTCGGTCAGGTTCTCC-AGCGATGCTACGACGATGGTGCCCTGGCGAAGAAAAATGCG
518 CAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* *
17783174 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACT
582 GCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * ** * *
17783239 AGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGTGGGCACTGAGCCGGCCAGA
646 GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGA
** * * * * * * *
17783304 GGTACGGGATGCGCAA-CCCGGGCATCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTACC
711 GGGGCGGGATGCGCAAGCCAGGG-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCC
17783368 GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-GA
775 GCAACCCTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-
**
17783432 AAACGAGCAGGCTGGCGGGCGGGCGGGCACTACG-CTG
838 AAACGAGC-GGGGGGCGGGCGGGCGGGCACTACGTC-G
*
17783469 GCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
17783534 ATATTTCTACGTGCCAAGGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * ** *
17783599 ACGTGAAGTTTCATGGCAAGAAGATTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
17783664 TC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGG-CCCAAACTTGGTAGACGTGATCCTT
196 TCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTT
* * * * *
17783727 GTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAATGTACAAGATTTTTTTTTA
259 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA--TTTTGTGA
* *
17783792 CCATTTGAAAAAAGTGTCCCCATTTCAA-ACATTTTAATGGCTACTGGCAGCAAACCTATAAAAT
322 CCATTTGAAAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17783856 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAG
386 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** * * *
17783921 TTCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCGCCCCCTGGCCCCCCCGATCGTC-
451 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCTC-GG-CCCCCCGATCGCCG
* * * * * *
17783985 AGAACCCTAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAA
512 A-AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * *
17784050 AATGCGGCACTAGCACATGCTCGAGCCCAACATGTGCTGCCGTAACCCTTAGTCCAGTCCGATCT
576 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCC----T-C-G---G-TC-
* *
17784115 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACCTTCGTATGCCTAAGTCAACCCAC
629 -------CG---G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
* * * * * ** * *
17784180 GGAACGAGTGTACGGGCGCTTAGCTAGCCAGAGGGGCGGGATGCGCAAGCCAAGGATTGGTCGGG
679 GAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGG
*** * * * *
17784245 TCCCCCTCTATATGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGA
744 TCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTC-CGTCTGATCTTAGACTGGGA
* * * ** * * *
17784310 ATGAACACCATATGCCTAAGCCAACCGACGAAACAAGCGACCGGGCAGGCAGGTGGGCACTACGT
808 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGGGGCGGGCGGGCGGGCACTACGT
17784375 CG
872 CG
* * *
17784377 GCCAAAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
17784442 ATATATTTTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17784507 CCCGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTT
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
17784568 ATACGTGATA
Statistics
Matches: 6297, Mismatches: 699, Indels: 448
0.85 0.09 0.06
Matches are distributed among these distances:
822 282 0.04
823 121 0.02
824 74 0.01
825 4 0.00
826 133 0.02
827 1 0.00
828 2 0.00
830 3 0.00
831 1 0.00
832 2 0.00
833 3 0.00
834 4 0.00
835 2 0.00
837 7 0.00
838 1 0.00
841 1 0.00
842 2 0.00
843 1 0.00
844 3 0.00
845 1 0.00
846 4 0.00
847 16 0.00
848 2 0.00
849 32 0.01
850 28 0.00
851 17 0.00
852 5 0.00
853 1 0.00
854 9 0.00
855 16 0.00
856 20 0.00
857 3 0.00
858 27 0.00
859 15 0.00
860 25 0.00
861 14 0.00
862 15 0.00
863 10 0.00
864 41 0.01
865 135 0.02
866 6 0.00
867 11 0.00
868 6 0.00
869 4 0.00
870 1 0.00
871 14 0.00
872 105 0.02
873 121 0.02
874 287 0.05
875 9 0.00
876 10 0.00
877 839 0.13
878 60 0.01
879 175 0.03
880 495 0.08
881 8 0.00
882 116 0.02
883 99 0.02
884 3 0.00
885 3 0.00
886 4 0.00
887 2 0.00
888 2 0.00
889 2 0.00
890 56 0.01
891 3 0.00
892 3 0.00
894 4 0.00
895 6 0.00
896 2 0.00
897 1 0.00
898 392 0.06
899 689 0.11
900 425 0.07
901 212 0.03
902 5 0.00
903 336 0.05
904 321 0.05
906 4 0.00
907 3 0.00
908 257 0.04
909 113 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGATCGCCGAAACCCCAA
TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGC
GGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGCAACC
CTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGGGGCGGGCGGGCGGGCACTACGTCG
Found at i:17778862 original size:26 final size:26
Alignment explanation
Indices: 17778833--17778885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17778823 CCGATCCGAT
17778833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17778859 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17778885 C
1 C
17778886 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17779768 original size:26 final size:26
Alignment explanation
Indices: 17779732--17779784 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17779722 CCGATCCGAT
17779732 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
17779758 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17779784 C
1 C
17779785 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17779907 original size:899 final size:900
Alignment explanation
Indices: 17777956--17781555 Score: 5419
Period size: 899 Copynumber: 4.0 Consensus size: 900
17777946 CCGGTCCGAT
* * * *
17777956 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-GGCGCACAA
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGT-AAGGGCGCTCAG
* * * *
17778020 CCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCACCCTCTGCATGCTGCCGATC
65 CCAGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
17778085 TTGCTGCCACAACCATCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
130 TTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* *
17778150 ACCAACGAAACGAGCGGGTGGGCGGGCGGGCGGGCA-TCACGTCGGCCAGAGAGACGGGATGCGC
195 ACCGACGAAACGA---GGCGGGCGGGCGGGCGGGCACT-ACGTCGGCCAGAGAGACGGGATGCGC
* *
17778214 AAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTC
256 AAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
17778279 CATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAG
17778344 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
386 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
*
17778409 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
17778474 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
17778539 TAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTG
581 TAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTG
* *
17778604 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCAT
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCAC
* *
17778669 ATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCACGGGAACCCCAATGCCACCGGTCAGGTTAT
711 ATCATGTGCGCACACCCCTCCGGCTCCCCCGATCACGGGAACCCCAATGCCACCGGTCAGGTTAT
*
17778734 CCGACGATGCTCCACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCA
776 CCGACGATGCTCCACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCA
* *
17778799 GCATGTGCTGCTAAAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCATGTGCTGCTAAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
17778859 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGTAAGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTAAGGGCGCTCAGC
*
17778924 CAGCCAAAGGGGCGGGATGCTCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CAGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* *
17778989 TGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17779054 CCGACGAAACGAGG-GGGCGGGCGGGTGGGCACTACGTCGGCCAGAGATATGGGATGCGCAAGCC
196 CCGACGAAACGAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
17779118 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTT
261 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
17779183 TTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAC
17779248 TCATTTTCTATTTTTCACGATTTTCAAAAC-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
391 TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
*
17779312 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
17779377 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
17779442 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
* *
17779507 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCATATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCAT
* *
17779572 GTTCGCACACCCCTCCGGCTCCCCCGTTCACGGGAACCCCAATGCCACCGGTCAGGTTATCCGAC
716 GTGCGCACACCCCTCCGGCTCCCCCGATCACGGGAACCCCAATGCCACCGGTCAGGTTATCCGAC
*
17779637 GATGCTCCACGATGGTGCCCCGGTGAAGAAAAAATGCGGCACCAGCACATGCCCGAACCCAGCAT
781 GATGCTCCACGATGGTGCCCCGATGAAG-AAAAATGCGGCACCAGCACATGCCCGAACCCAGCAT
* *
17779702 GTGCTGCTAAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATG
845 GTGCTGCTAAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
17779758 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGTAAGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTAAGGGCGCTCAGC
*
17779823 CAGCCAAAGGGGCGGGATGCTCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CAGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* *
17779888 TGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
17779953 CCGACGAAACGAGG-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGATATGGGATGCGCAAGCC
196 CCGACGAAACGAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
**
17780017 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
17780082 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAC
* * *
17780147 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
391 TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
* * * * *
17780212 AAGGAGTTTTGGTCCCAAAATTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
17780277 TTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGTCCATTTGAAAAAAAGTGTCCCCATTTTAG
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTAAG
* * * *
17780342 ATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
* * *
17780407 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCACACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCA
* * * ** * * * *
17780472 TGTGCGCACACCCCTCGGGCCCCCCCGATCGC-CAAACCCTAATACCGCTGGTCAGGTTCA-CCG
715 TGTGCGCACACCCCTCCGGCTCCCCCGATCACGGGAACCCCAATGCCACCGGTCAGGTT-ATCCG
* ** * * *
17780535 GCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
779 ACGATGCTC-CACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGC
* ** * * * * * *
17780600 ATGTGTTGCTTTAACCCTCAGTCTGGTCCAATCTTAGACTAGCAATGAACTCTGTATG
843 ATGTGCTGCTAAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* ** *
17780658 CTTAGACTGGGAATGAACTTGGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTAAGGGCGCTCAGC
** * * * * * ** *
17780723 C-GACCAGTGGGGTGGGACGGGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTATCAATC
66 CAG-CCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
17780787 CTACTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCA
130 TTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
17780852 ACTGACGAAACAAGCAGGCGGGCGGACGGGGGGGCACTACGCCGACCAGAGAGACGGCATGCGCA
195 ACCGACGAAAC--G-AGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
17780917 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCCATGCC
257 AGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
17780982 ATTTTTATGGTTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGA
* * **
17781047 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTTGGATTTTTTAAAATTTTT
387 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * * *
17781112 TTGGAAGGAGTTTTGCCCCCAAAGTAGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
17781177 AAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17781242 AAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCGCAAATGCTCTTTAAGGGGGTGTGA
582 AAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
* * **
17781307 GTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAGGTACCAGCAC-CTAAAGCAC
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTC-ATCGCAC
* * * * * *
17781371 ATCATGTGCACACACCCC-CC-GC-CCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCT
711 ATCATGTGCGCACACCCCTCCGGCTCCCCCGATCACGGGAACCCCAATGCCACCGGTCAGGTTAT
* * * * *
17781433 -C--CG--G-----CGATGGTGCCCCGATGAAGAAAAATGTGGCACTAGCACATGCCTGAGCGCA
776 CCGACGATGCTCCACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCA
** *
17781488 GCATGTGCTG-TCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
841 GCATGTGCTGCT-AAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
17781548 CTTAGACT
1 CTTAGACT
17781556 AGGATGCACA
Statistics
Matches: 2505, Mismatches: 176, Indels: 45
0.92 0.06 0.02
Matches are distributed among these distances:
889 1 0.00
890 103 0.04
896 1 0.00
898 389 0.16
899 705 0.28
900 434 0.17
901 210 0.08
902 4 0.00
903 338 0.13
904 320 0.13
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTAAGGGCGCTCAGC
CAGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
TGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAC
TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCAT
GTGCGCACACCCCTCCGGCTCCCCCGATCACGGGAACCCCAATGCCACCGGTCAGGTTATCCGAC
GATGCTCCACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATG
TGCTGCTAAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17780661 original size:26 final size:26
Alignment explanation
Indices: 17780632--17780684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17780622 CTGGTCCAAT
17780632 CTTAGACTAGCAATGAACTCT-GTATG
1 CTTAGACTAGCAATGAACT-TGGTATG
* *
17780658 CTTAGACTGGGAATGAACTTGGTATG
1 CTTAGACTAGCAATGAACTTGGTATG
17780684 C
1 C
17780685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTTGGTATG
Found at i:17782387 original size:26 final size:26
Alignment explanation
Indices: 17782348--17782400 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17782338 CCGGTCCGAT
* *
17782348 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
*
17782374 CTTAGACTGAGAATTAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
17782400 C
1 C
17782401 CTACAAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:17784142 original size:26 final size:26
Alignment explanation
Indices: 17784113--17784165 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17784103 CCAGTCCGAT
*
17784113 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17784139 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17784165 C
1 C
17784166 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17785013 original size:26 final size:26
Alignment explanation
Indices: 17784963--17785015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17784953 CTAGTCCGAT
**
17784963 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17784989 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17785015 C
1 C
17785016 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17785849 original size:26 final size:26
Alignment explanation
Indices: 17785773--17785851 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17785763 TCGGTTCGAT
*
17785773 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
17785799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
17785825 GTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17785851 C
1 C
17785852 CTAAGTGAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17787400 original size:26 final size:26
Alignment explanation
Indices: 17787371--17787423 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17787361 TCGGTCCGAT
17787371 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAGCTCCGTATG
17787397 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAGCTCCGTATG
17787423 C
1 C
17787424 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAGCTCCGTATG
Found at i:17788766 original size:889 final size:892
Alignment explanation
Indices: 17787037--17790038 Score: 3943
Period size: 889 Copynumber: 3.4 Consensus size: 892
17787027 TGTGAATTCA
*
17787037 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17787102 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
17787167 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTACGCACATCCCCCTGGCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCC
* * * * * * *
17787232 CCCCGATCGTCAGAACCCCAATGCCGTCGGTCAAGTTCTCTGACGATGGTCCAACGATGGTGCCC
196 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * *
17787297 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTT
261 CGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTACTGCCGTAAACCTCGGTC
* *
17787362 CGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGCCTA
326 CGGTCCGATCTT-GACTGGGAATGAGCTCCAT-TGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
17787427 AGTCAACCCATGAAATGAACGTGCGGGAGCTCAGCCGGGCAGAGGGGCGGGATGCGCAAGAT-GG
389 AGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-TCGG
* * ** * * *
17787491 GGATCGATCGTGTCCCCCTCCATGTGCCATCGATCCTACTGCCACAACCCTTGATCCGGTCTGAT
453 GGATCGATCGAGTCCCCCTCTATGTGCTGTCAATCCTGCTGCCACAACCCTAGATCCGGTCTGAT
*
17787556 CTTAGACTGGTAATGAACCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGC
518 CTTAGACTGGCAATGAACCTGTATGCCTAAGCCAACCGACGAAACGA--GGGC-GGCGGACGGGC
* * * *
17787621 ACTCCACCGGCCAGAGGGACGGGATGCGCAAGCCTTGGATCGATAAGGTGGTAGGTGGGTTTAGG
580 ACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
17787686 CACATCTTCATATTTCTATGCTTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
645 CACATCTTCATATTTCTACG-TGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
17787751 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACT
709 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACT
* ** **
17787816 TTTTACAATTCGGGATTTTTTAAAATTTTTTTACAAGGAGTTTTGGCCCTAAACCTGGTAGACGT
774 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAA-CTGGTAGACGT
* * *
17787881 GATCCTTGTATTTTTGTTGGCATGCGTAAAATAATTCAGCTAAAAACTGGAAGAG
838 GATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGAG
*
17787936 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
17788001 CAAACCTGTAAAATCTCAAATGCACTTTAATGGGGTGTGAGTTCTTGAGGTTTCATGA-GGATAG
66 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
17788065 GGAGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTAG-CC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCC
* **
17788128 CCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCGT-CGGTGATGGTGCC
196 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC-TCCGACGATGGTGCC
* *
17788192 CCGATGAAGAAAAATGTGACACCAGCACATGCCCGAGGCC-AGTATGTACTACCGTAAACCTCGG
260 CCGATGAAGAAAAATGTGACACCAGCACATGCCCGA-GCCTAGCATGTACTGCCGTAAACCTCGG
* * *
17788256 TCCGGTCCGATCTTAGACTGGAAATGAACTCCATTTGCTTAGACTGGGAATGAACTACGTATGCC
324 TCCGGTCCGATCTT-GACTGGGAATGAGCTCCA-TTGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17788321 TAAGTCAACCCACGAAACGAGCGTGCGTGTGCTTAGTCGGCCAGAGGGGTGGGATGCGCAAGTCG
387 TAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCG
* * * * ** * *
17788386 GGGATCG-GCTGAGTCCCCCTCTGTGTGTTGCCAATCCTGCTGCCGTAACCCTAGGTCGGGTCTG
452 GGGATCGATC-GAGTCCCCCTCTATGTGCTGTCAATCCTGCTGCCACAACCCTAGATCCGGTCTG
*
17788450 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC-A-GGC-G-GG-CGGGC
516 ATCTTAGACTGGCAATGAAC-CTGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGACGGGC
** *
17788510 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGG
580 ACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
17788575 CACATCTTCATATTTCTACGTGCGAATGCCAATTTTATGGCATGTGAATTCATACAATGGTCCCT
645 CACATCTTCATATTTCTACGTGC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
17788640 CAAGCCTCCACGTGAAGTTTCATGGCAAAATGACTCATTTTTTATTTTTCATGATTTTTGAAACT
709 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACT
* * * *
17788705 TTTTGGGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGTGTTTTGGCCCTAAACTTGGTAGACGT
774 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAAC-TGGTAGACGT
17788770 GATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAA-ATG
838 GATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGA-G
*
17788825 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
17788890 CAAACCTGTAAAATCTCAAATGCATTTTAA-GGGGTGTGAGTTCTCGATGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
17788954 GGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGTACA-CCCCCTGGCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCC
*
17789018 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GTT-T----C--T-CT--GACGATGGTGCCC
196 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * *
17789072 CGGTGAAGAAAAATGTGGCACCAGCACATG-CCGAAGCCCAGCATGTGCTGCCGT-AACC-C--T
261 CGATGAAGAAAAATGTGACACCAGCACATGCCCG-AGCCTAGCATGTACTGCCGTAAACCTCGGT
* *
17789132 -C-G---G-TC----C--GG--T---CT-GA-T-CTTAGACTAGGAATGAACTCCGTATGCCTAA
325 CCGGTCCGATCTTGACTGGGAATGAGCTCCATTGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * *
17789177 GTCAACCCACGAAACGAGCGTGCAAGTGCTCAACCGATCGGAGGGGCAGGATGCGCAAGACGGGG
390 GTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGG
* * * * **
17789242 ATCGATCGGGTCCCCCTCTACGTGCTGTCATTCCTGCTGCCACAACCCTCGATCTAGTCTGATCT
455 ATCGATCGAGTCCCCCTCTATGTGCTGTCAATCCTGCTGCCACAACCCTAGATCCGGTCTGATCT
* * *
17789307 TAGATTGGCAATGAACCTGTATGCCTAAGCCGATCGACGAAACGAGCGGGCGGGCGAGCGGACGG
520 TAGACTGGCAATGAACCTGTATGCCTAAGCCAACCGACGAAACGA------GGGCG-GCGGACGG
17789372 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
578 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
17789437 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGCCTTGTTAATTCATACAATGGTCC
643 GGCACATCTTCATATTTCTACGTG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
17789502 CTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
707 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAA
* ** * * *
17789567 CTATTTGCGGTTCAAGATTTTTGAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC---TAGGCG
772 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTGGTAGACG
* * *
17789629 TGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
837 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGAG
* *
17789685 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCGG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
17789750 CGAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
66 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * ** * *
17789815 GGGGCCAATATAAGGTCCAAGTAGCAGAAACCATCACACATCATGTTTGCACACCCCCCCGGCTC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCC
* * * * *
17789880 CCCCGATCGTCGGAACCCCAATACCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCC
196 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * * * *
17789945 CGATGAATAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATTTACCGCCGCAATCGTCGGTC
261 CGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTACTGCCGTAAACCTCGGTC
*
17790010 CGATCCGATCTTGACTGGGAATGAGCTCC
326 CGGTCCGATCTTGACTGGGAATGAGCTCC
17790039 GTATGCCTAA
Statistics
Matches: 1840, Mismatches: 199, Indels: 132
0.85 0.09 0.06
Matches are distributed among these distances:
852 25 0.01
853 148 0.08
854 2 0.00
856 1 0.00
857 2 0.00
860 149 0.08
861 76 0.04
862 41 0.02
863 5 0.00
864 229 0.12
865 1 0.00
868 1 0.00
869 2 0.00
870 2 0.00
871 2 0.00
873 55 0.03
874 6 0.00
875 2 0.00
877 2 0.00
878 11 0.01
879 52 0.03
880 1 0.00
881 1 0.00
882 2 0.00
883 2 0.00
884 1 0.00
887 1 0.00
888 29 0.02
889 444 0.24
890 35 0.02
891 2 0.00
893 3 0.00
894 2 0.00
895 2 0.00
896 288 0.16
897 39 0.02
898 55 0.03
899 119 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCC
CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
CGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATGTACTGCCGTAAACCTCGGTC
CGGTCCGATCTTGACTGGGAATGAGCTCCATTGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGAGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
TCGATCGAGTCCCCCTCTATGTGCTGTCAATCCTGCTGCCACAACCCTAGATCCGGTCTGATCTT
AGACTGGCAATGAACCTGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGACGGGCACTACA
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACGTGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCG
GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGAG
Found at i:17793442 original size:26 final size:26
Alignment explanation
Indices: 17793413--17793488 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
17793403 CTGGTCTGAT
17793413 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
* *
17793439 CTTAGACTGGGTATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
17793465 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
17793489 TGCCTAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:17794709 original size:901 final size:900
Alignment explanation
Indices: 17790201--17799558 Score: 11370
Period size: 901 Copynumber: 10.5 Consensus size: 900
17790191 GGCTTGTAAA
17790201 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * *
17790266 GGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
17790331 TGTAATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
131 TGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
17790396 CCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
17790461 TCAAATGCTCTTT-AGAGGGGTGTGAGTTCTCGAGGTTTGGTTAGGGATAGGGGGCCAATATAAG
260 TCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
17790525 GGCCAAGTACCAGCACCCATCGGACATCATATGCGCACACCCCCAGCCCCCCCGATCGTCGGAAC
324 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
*** * * * * *
17790590 AGTAATGCCACCGGTTAGGTTCTCCGGTGATGCTTCGATGATGGTGCCCCGATGAGGAAAAATAC
389 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATAC
* * * * * *
17790655 GGCACCAGCACATGCCCGAGTCTAGCATGTGCTG-TCACAACCCTCGAT-CTGATCTGATCTTCA
454 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCAG-TCCGATCTT-A
17790718 -ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
516 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGA
* * * * * * * ** * *
17790782 AGCGAGCGTGCGGGCACTTAGCTGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATTGGCCAGGTC
580 AACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTC
* * * * *** * * *
17790847 CCCATCTACATGCTGTCAATCCTGCTGCTATAACCCTCCGTCCGATCTGATTTTAGACTGGGAAT
645 CCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* *
17790912 GAACTCCATATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCGGGGCGGGCACTA
710 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA-----GCGGGCGGGC-GGGCGGGCACTA
* *
17790977 CGCCGCCCAGAGAGAC-GGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
769 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
17791041 TCATCATATTTTTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAG
834 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
17791106 CC
899 CC
* * **
17791108 TTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * * * ** *
17791173 GGTTCAGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAAGTTGGTAGACAAGATACT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
17791238 TGTATTTTTGTTGGCATTCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
17791303 AATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACCGGCAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17791368 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * **
17791432 CCAAGTACCAGCACCCATCACACATCTTGTGCGCTCACCCCCCCCTCGGCCCCCTTGATCACCGG
326 CCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCC-CGGCCCCC-CGATCGTCGG
* * * * *
17791497 AACCCCAATGCCACCGGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAA
386 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAA
* * * ** *
17791562 TGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTG-TCGTAACCCTCGGTCTGGTCTGATCTT
451 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCAGTCCGATCTT
* * * ** * *
17791626 AGACTGGAAATGAACTTCGTATGCTTACACTACGAATAAACTCTGTATGCCTAAGTCAACCCACA
515 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACG
* * * * * *
17791691 AAACGAGCGTGCGGGCGCTCAGCTGGCC-AGAGAGGCGAGAAGTGCAAGCCGGGGATTGGTCGGG
579 AAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAG-GGCGAGATGCGCAAGCCGGGGATCGGCCGGG
* * ** * * *
17791755 TCCCCCTCT-GGATGCTGCCGATCCTACTATCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGG
643 TCCCCCTCTACG-TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
** *
17791819 AATGAACTCTATATGCCTAAGCCAACCGACGAAA--TG-AGCGGGCGGGCGGGCGGGCACTACGC
707 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGC
* * *
17791881 CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGAACATCT
772 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
17791946 TCATATTTCTGTGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCATTAGGCC
837 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * *
17792010 TTCACGTGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
** * * ** *
17792075 GGTTCGATATTTTTTAAAATTTTTTTGGAAGGAGTTCTGGCATCAAACTTGGTAGACATGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* **
17792140 TGTATTTTTGTTAGCATGCACAAGGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17792205 CATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATC-GTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
**
17792269 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCTTGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
17792334 CCAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACC
** * * * *
17792399 CCAATGTTGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAATAAAAATACG
390 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATACG
* * * * * *
17792464 GCACCAGCACATGCCCGAGCCCAACATTTGCCGCTGCAACCCTCAGTCCGGTCTGATCTTAGACT
455 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACT
* * * *
17792529 GGGAATGAACTCTGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATG
520 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACG
* * * * * * ** * *
17792594 AACGTACGGGTGCTCAACCGGCCAGAAGGGCGGGATGCGTGAGCCGGGGATCGACCGGGTCCCTC
584 AGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * * * * *
17792659 TCTGCATGCTGTCGATCCTACTACTGCAACCCTTGGTCCGGTCTAATCTTAGACTGGGAATGAAC
649 TCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
** * * ** *
17792724 TCTATAGGCTTAAGCCAATTGACGAAACGAGCAGACGGACGGGCGGGCGGGCACTACGCCGGCCA
714 TCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-CGGGCGGGCGGGCGGGCACTACGCCGGCCA
* *
17792789 GAGAGACGGTATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
778 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
17792854 TTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCC
843 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
17792912 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTACTATTTTTCACGATTTTCAAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * * *** * * *
17792977 GGTTCGGGACTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCTATAACCTTGGTAGATGTGATTCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17793042 TGTATTTTTGTTGGCATGCAAAAAAAAATTCGGGTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17793107 CATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17793172 CACATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
17793237 CCAAGTACTAGCACCCATCGCACATCACGTACGAACACCCCCCGGCTCCCCCGATTG-CTGGAAC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTC-GGAAC
* * * * * **
17793301 CCCAATGTCGTCGGTCAGATTCT-C--CG--G--T----GATGGTGCCCTGGTGAAGAAAAATGT
389 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATAC
* * * *
17793355 AGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCAGTAACCCTCGGTCTGGTCTGATCTTAGAC
454 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC-GGTC----C----A-
* * *
17793420 TGGGAATGAACTCTGTAAGCTTAGACTGGGTATGAACTCCGTAAGCTTAGACTGGGAATGAACTC
505 ---G--T---C-C-G--ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * ** *
17793485 TGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGGGGC-AGGATG
558 -GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGA-GATG
* * * * * * * * *
17793549 CGCAAGCCGAGGATCGACCGGGTCCCCCACTGCGTGCTACCAATCCTGTTGTCGCAACGCTCGGT
621 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
** * * * * ** * * *
17793614 CCAATCCGATCTTAGACTGGCAATGATCTCCATATGAATAAGCCGACCGACGAAACGACCTGGCG
686 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCG
** * * *
17793679 GGCGGGCGGAAGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCCATAGGGTG
750 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
17793744 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCGTTTTTATGGCTGGTAAATT
815 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
*
17793809 CATACAATGGTCCCATAAGCC
880 CATACAATGGTCCCTTAAGCC
* * *
17793830 TTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * *
17793895 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGACCCAAACTTGGTAGACGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
17793960 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17794025 CATTTGAAAAAAGT-TTCCCATTTCAGACACTTTAATGGCTACTTGTAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17794089 CAAATGCTCTTTTAGGGGGTGTCATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
17794154 CCAAGTACTAGCACCCATCCCACATCATGTGCGCACA-CCCCCAGCCCCTTCGATCGCCGGAACC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACC
* * * *
17794218 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGACGATGTTGCCCCGGTGAAGAAAAATACG
390 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATACG
* * * * * *
17794283 GCACCAACACATGCCCGAGCCCAGGATGTGCTGCTGCAATCCTCGGTCCACTCCAATCTGAGACT
455 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACT
* * *
17794348 GGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGCCTAAGTCAACACATGAAACG
520 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
17794413 AGCGTGCAGGTGCTCAGCCAGCCAAAAGGGCGAGATGTGCAAGCCGGGGATCAGTCGGGTCCCCC
584 AGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * ** * *
17794478 TGTATGTGCTGCCGATCTTACTGCCATAACCCTCGGTCCGGTCTGATCCTAGACTAGGAATGAAC
649 TCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* *
17794543 TCTGTATGCCTAGGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
714 TCCGTATGCCTAAGCCAACCGACGAAACGAGCA-GCGGGCGGGCGGGCGGGCACTACGCCGGCCA
* *
17794608 GAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATAT
778 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
17794673 TTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
843 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
17794731 TTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* *
17794796 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTGGACGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17794861 TGTATTTTTTTTAGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17794926 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17794991 CGAAA-GCTCTTTAA-GGGGTGTGAGCTCTTGAGGTTTGATGAGGGATAGGGGG-CAATATAAAG
261 C-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * * *
17795053 GCCAAGTACCAGAACCTGTTGCACATCATGTGCACACACCCCCCGGTCCCCTCGATCGTCGGAAC
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAAC
* * * * *
17795118 CCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGACGATGCTGCCTCGGTGAAGAAAAATAT
389 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATAC
* * * *
17795183 GGCACCAACACATGCCTGAGCCCAGCATGTGTTGCTGCAACCCTCGGTCCAGTCTGATCTTAGAC
454 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGAC
** * * ** * *
17795248 TGGGAATGAACTCCACATGCCTAGACTGGGAATGAACTCCATATTACTAAGTCAACACACAAAAC
519 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAAC
* * * * **
17795313 GAGCGTGCGGGCACTCAGCCAG-CAAGAAGGGCCAGATGCGCAAGCCGGGGATTGATCGGGTCCC
583 GAGCGTGCGGGCGCTCAGCCGGCCAA-AAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * *
17795377 CCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGATCTGATCTTAGACT-GGAATGA
647 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * *
17795441 ACTCCGTATGCCTAAGCCAACCAACGAAACGAGCA-----------TGCGGGCACTATGCCGGCC
712 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
17795495 AGAGAGACGGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTCTGGGCACATCTTCATA
777 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
17795559 TTTCTGCATGCCGATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
842 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * ** *
17795618 TTCATGTTAAGTTTCATGGCAAGTTGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGA
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-A
* *
17795683 -GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCC
65 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
17795747 TTATATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGA
130 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
17795812 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
17795877 TCAAATGCTCTTTAAGGGGGTGTAAGTTTTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
260 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
17795941 GCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCTCCCGATCGTCGAAA
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGTCGGAA
* *
17796006 CCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC-T---C--T-G-G---CGATG--G------A
388 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATA
* * * * *
17796052 --GC-CC--CA-A-CCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGGTCCGATCTTAGA
453 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGA
* * * *
17796110 CTGGGAATGAAATCCGTATGCTTCA-ACTAGGAATGAACTCGTATGCCTAAGTCAACTCAAGAAA
518 CTGGGAATGAACTCCGTATGCTT-AGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAA
* * * * * ** * * * *
17796174 CGAGTGTGTGGGCGCTCAACCGGCC-AGAGGGACGGGATGTACATGCCGGGGATCGACCGTGTCA
582 CGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGG-CGAGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * *
17796238 CCCTTTACGTGTTGCCGATCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
646 CCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * *
17796303 AACTCCGTATGCCTAAGCCAATCG--GCAA--A--A-CGAGCGGGCGGGCGGGCACTACGCCGGC
711 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGCCGGC
* *
17796361 CAGAGAGAC-GGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGCGTTTAGGCACATCTTCAT
776 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
17796425 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCC
841 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
17796485 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * ** * *
17796550 GGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCAGCCCCAAACTTGGTAGACATGATTCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
17796615 TGTATTTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
131 TGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * *
17796680 CCATTTGAAAAAATTGTCTTCAATTT-AGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAAT
195 CCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
** * *
17796744 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATATTATATG
259 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * **
17796809 GGCTAAGTACCAGCACCCGTCGCACATCATGTACGCACAACCCCCCTGACCCCTTGATCGTCGGA
324 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCC-GGCCCCCCGATCGTCGGA
* * * * * * * *
17796874 ACCCCAATGTCGCAGGTCATGTTCTCCGGCGATGCTCCGGCGATGGTGACCCGACGATGAAAAAT
387 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAAT
* ** * * * * * *
17796939 GCAACACCAGCACATGTCCAAACCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAG
452 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAG
* * *
17797004 AATGGAAATGAACTCCGTATGCGTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAA
517 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAA
* * * * * *
17797069 ACGAGCATACGGGCAG-TCAGCCAGCCAAAGGGGC-AGGATGCGCAAGTCAGGGATCGGCCGGGT
581 ACGAGCGTGCGGGC-GCTCAGCCGGCCAAAAGGGCGA-GATGCGCAAGCCGGGGATCGGCCGGGT
** * * **
17797132 CCCCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGATCCCATCTTAGACTGGGAA
644 CCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * * *
17797197 TGAACTCCGTATGCCTAAGCCAACTGACAAAAC--G-AGCGGGCGGGCAGGCGGGCACTACGTCG
709 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGCCG
* *
17797259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGTGTTTAGGCACATCTTC
774 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
17797324 ATATTTGTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
839 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * * ** *
17797386 TTCACGTGAAGTTTCATGCCAAAACGACCCATTTTTTATTTTACGTGATTTTTGAAACTTTTTGA
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-A
* * * *
17797451 -GGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCC
65 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
17797515 TTGTATTTTTTTTGCCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGA
130 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
17797580 CCATTTGAAAAACGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
17797645 TCAAATGCTCTTTCAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
260 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
17797710 GCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAAC
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAAC
* * *
17797775 CCCAATGCCACCGGTCAGGTTCT-C--CGA----T----GATGGTGCCCCGGTGACGAAAAATAC
389 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATAC
* * * * **
17797829 GGCACCAGCACATGCCTGAGCCCAACATGTGCTTCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
454 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGAC
* *
17797894 TGGGAATGAACTCTGTA-GCTTAGACTGGGAATGAACTCGTATGCCTAGGTCAACCCACGAAACG
519 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
17797958 AGCATGCGGGCGCTGAGCCGGCC---AGAG-G-GATGCGCAAGCCAGGGATCGGTCGGGTCCCCC
584 AGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * * * * *
17798018 TCTATGTGCTGCCGATCTTGCTGTCGTAAACCTCGATCTGGTCTGATCTTAGATTGGGAATGAAC
649 TCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
17798083 TCCGTATGCCTAAGTCAACCGACGAAACGA--A-----CGAGCTGGTGGGCACTATGCCGGCCAG
714 TCCGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
** * ** *
17798141 AGAGATAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGAACATCTTCATATT
779 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
17798206 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
844 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
17798263 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTAAGATTTTTGAAACTTTTTGC
1 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
* * * * *
17798328 AGTTCGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCT
66 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
17798393 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
131 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17798458 CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAAGGCTACTAGCAGCAAACCTGTAAAATCT
196 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17798523 CAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGACAGGGGGCCAATATAAGGG
261 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17798588 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCAGAACCC
326 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
* * * * *
17798653 CAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCGGCGATGGTGCCCCGACGAAGAAAAATACGG
391 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATACGG
*
17798718 CACCAGCACATGCCCGA-CCCAGCATGTGCTGCTGGAA-CC-C--T-CA----G-TC-----C--
456 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTG
* * * *
17798765 GG--T----T-C-AAT-CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCATCCCACTAAATGA
521 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
17798820 GCATGCGGGCGTTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCA
585 GCGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
* * * * * * **
17798885 CTGCGTGCTACCGATCCTGCTGCCACAACCGTCGATTCGGTCCAATCTTAGACTGGGAATGAACT
650 CTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
17798950 CTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGACGAGCGGGCGGGCACTACGTCGGCCAG
715 CCGTATGCCTAAGCCAACCGACGAAACGAGC-AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
**
17799015 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATT
779 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
17799080 TGTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCC
844 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17799137 TTCACGTGAAGTTTCATGGCAAGAC-AGCTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
1 TTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTA
* * *
17799201 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACATGATCC
65 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
17799266 TTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
130 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
17799331 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATC
195 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
17799396 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATCTAAGG
260 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
17799461 GCCAAGTACCAGCACCCATTGCACATCATATGCGCACACCCCCCCGACCCACCCGATTGTCGAAA
325 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGTCGGAA
* **
17799526 CCCCAATGTCATCGGTCAGGTTCTCCGGCGATG
388 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
17799559 GTGCCCCGGT
Statistics
Matches: 7319, Mismatches: 955, Indels: 385
0.85 0.11 0.04
Matches are distributed among these distances:
857 1 0.00
859 1 0.00
860 10 0.00
861 60 0.01
862 110 0.02
863 105 0.01
864 4 0.00
865 3 0.00
866 117 0.02
867 240 0.03
868 159 0.02
869 97 0.01
870 6 0.00
871 1 0.00
873 2 0.00
874 469 0.06
875 11 0.00
876 81 0.01
877 472 0.06
878 4 0.00
879 3 0.00
880 4 0.00
881 109 0.01
882 3 0.00
883 3 0.00
884 1 0.00
885 4 0.00
886 63 0.01
887 416 0.06
888 201 0.03
889 51 0.01
890 1 0.00
891 2 0.00
892 53 0.01
893 4 0.00
894 3 0.00
895 74 0.01
896 146 0.02
897 8 0.00
898 310 0.04
899 63 0.01
900 318 0.04
901 1121 0.15
902 839 0.11
903 145 0.02
904 1 0.00
905 76 0.01
906 131 0.02
907 123 0.02
908 8 0.00
909 10 0.00
910 297 0.04
911 2 0.00
914 2 0.00
915 3 0.00
916 39 0.01
917 141 0.02
918 519 0.07
919 3 0.00
921 1 0.00
922 4 0.00
923 3 0.00
925 1 0.00
926 1 0.00
927 56 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTAC
GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATACGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAAAAGGGCGAGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTC
TACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
Found at i:17797039 original size:26 final size:26
Alignment explanation
Indices: 17797001--17797051 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17796991 AATCCAATCT
*
17797001 TAGAATGGAAATGAACTCCGTATGCG
1 TAGAATGGAAATGAACTACGTATGCG
* *
17797027 TAGACTGGGAATGAACTACGTATGC
1 TAGAATGGAAATGAACTACGTATGC
17797052 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGAATGGAAATGAACTACGTATGCG
Found at i:17803038 original size:26 final size:26
Alignment explanation
Indices: 17802987--17803039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17802977 CTGGTCCGAT
* *
17802987 CTTAGACTGGGAATGAATTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17803013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17803039 C
1 C
17803040 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17803922 original size:26 final size:26
Alignment explanation
Indices: 17803886--17803938 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17803876 CCGGTCCGAT
*
17803886 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17803912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17803938 C
1 C
17803939 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17804486 original size:903 final size:899
Alignment explanation
Indices: 17802121--17811074 Score: 12085
Period size: 899 Copynumber: 10.0 Consensus size: 899
17802111 CCAGTCCCAT
* ** * *
17802121 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17802186 CGGCCAAAGAGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * * * *
17802251 TATTGGTGCAACCCTCGATCCT-GTCCGATCTTGGATTGGGAATGAACTCCGTATCCCTAAGCCA
131 TGCTGCCGCAACCCTTGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17802315 ACCGACG--A--A-----ACGAGCGGGTGGGCACTGCGTCGGCCAGAGATACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
17802371 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17802436 TTTATGGTTTGTAAATTCATACAGTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
17802501 TTCGTTTTCTATTTTTCACGATTTTTCAAACTATTTGCGGTTCATGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
* * * *
17802566 AAAGGTGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
455 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
17802631 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17802696 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGAGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17802761 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17802826 TGTTCGCACGCCCCCCCGGCCCCCCCGATCGCCGGAACCACAATGCCGCTGGTCAGGTTCTCCGG
715 TGTGCGCAC-ACCCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * ** * * *
17802891 CTATCCTCTGGTGATGGTGCCTCAACGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCA
778 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * *
17802956 TGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCTATATG
843 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
17803013 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * ** * *
17803078 CGGCTTGAGGGGCATGATGCGAAAGTCAAGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
17803143 TTCTGCCGCAACCCTTGGTCTGAT-TCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTTGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17803207 ACCGACGAAACGAACGGG-CG-GACGGGTGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAG
195 ACCGACGAAACGAGCGGGACGAG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
17803270 CGGTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
17803335 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** ** *
17803400 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTATTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * * * *
17803465 GGAAGGAGTTTTGGCCACAACCTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCATAAAAA
454 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
17803530 AAATCAGTTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
17803595 GACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17803660 TCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
17803725 ATGTGCGCAAACCCCCCGCCCCCCCCGATCGCCGGAAACCCACTGCCGCCAGTCAGGTTCTCCGG
714 ATGTGCGCACACCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
17803790 CGATGCTCCGACGATGGTGCCCCCACGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCAGCA
778 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * **
17803855 CGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
843 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
17803912 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
17803977 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTG-GATGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG-TGCTGCCGATC
* * * * ** *
17804041 CTGCTACCGTAACCCTTGATCCGATCCCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
130 CTGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17804106 ACCGACAAAATGAGCAGGCCGACGAGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGC-GG--GACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
17804171 AGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17804236 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17804301 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTCTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* *
17804366 TC-AGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAA
452 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17804430 AAAAATTCAGCTAAAAACTCGAAGCGTACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
17804495 TTAGACGCTTTAATGGCTATTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGT
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGT
* * **
17804560 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACTAATCGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17804625 CATCATGTGCGCACACCCCCCGGCCCGCCGATCGTCGGAACCCCAATGCCGCCAGTCAGG-T-T-
710 CATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
17804687 ---C--T-C-CCG-CGATGGTGCCCCG--GTAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
775 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
17804742 GCATGTGCAGACGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCAATATG
840 GCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * * * *
17804802 CTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGTGTGTGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17804867 CGGCCAGAGGGGTGGGATGCGCAATCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTG-CGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
17804931 TACTGCCGGAACCC-TCAGTCTGGTCTGATCATAGATTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17804995 ACCGACGAAATGAGC-GAACG-GACGGACGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGACGAG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
17805058 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATCCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17805123 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
17805188 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* ** *
17805253 GGAAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCATAAAA
454 GAAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
17805317 TAATTCATCTAAAAACTCGAAGTGTACAAGATATTGTGACAATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17805382 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17805447 TTCTCGAGGTTTGATGAGGGATA-GGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
17805511 CATGTGCGCACACCCCCCCAGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCAAC
713 CATGTGCGCACA-CCCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * **
17805576 GACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGAG-ACCAGCACATGCATGAGCCCA
776 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCA
* *
17805640 GCATGTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATG
840 GCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
17805700 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
17805765 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGAGTCCCCCACTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
17805830 TGCTGCAGCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGGACTCCGTGTGCCTAAGCCA
131 TGCTGCCGCAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
17805894 ACCGACGAAACGAGCGGG-TGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * ** *
17805958 CGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTGGAAATGGCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
17806023 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
17806088 TTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
* *
17806153 GAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17806218 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17806283 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17806348 CTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCA-CCATTCGCACATC
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATC
* * * * *
17806412 ATGTGCACACACCCCCCGGCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGAC
714 ATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * *
17806477 GATGCTCCGACGATGGTACCCCGACAAAGAAAAATACGGCACCAGCACATGCCAGAGCACAGCAT
779 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
17806542 GTGCTGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
844 GTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
17806598 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * **
17806663 CGGCCAAAGGGGTGGGATGCGCAAGTCGGGTATCGACCGGGACCCCCGCTGTGTGCTACAAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** *
17806728 TGCTGCCATAACCCTCCATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17806793 CTGACGAAACGAGCGGG-CGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGAGATGCGCAAGCC
196 CCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
17806857 GTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGTC-TGCCAATGCCATT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATT
*
17806920 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17806985 CTCGTTTTCTATTTTTTCACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTCTTC
390 CTCGTTTTCTA-TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * * *
17807050 GAAAGTAGTTTTGGCCCCAAACTTGGTATACGTGATGCTTGTATTTTTGTTGGGATGCA-TAAAA
454 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
17807114 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17807179 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17807244 TCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGAGCCAAGTACCAGCA-CCATTCGCACAT
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACAT
* * * * *
17807308 CATGTGCACACACCCCCCGGCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGA
713 CATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* ** *
17807373 CGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATATGGCACCAGCACATGCCAGAGCCCAGCA
778 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
17807438 TGTGCTGCCGCAACCCTCAATCCAGTCCGATCTTAGATTGGGAATGAACTCCATATG
843 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * ** *
17807495 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
17807560 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGTATCGACCGGGTCCCCCGCTGTGTGCTACAAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** *
17807625 TGCTGCCATAACCCTCTG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
131 TGCTGCCGCAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17807689 ACTGACGAAACGAGCGGG-C-AGGCGGGCGGGCACAACGCCGGCCAGAGAGACGAGATGCGCAAG
195 ACCGACGAAACGAGCGGGACGA-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
17807752 CCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGTC-TGCCAATGCCA
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCA
* *
17807815 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTAATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17807880 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GAGAATTTTGAAAATTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
**** * *
17807944 TCAGAAATCCTTTTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
452 TC-GAAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
17808009 AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17808074 TTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17808139 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCAAAGCACCAGCACCCATCGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17808204 CATCATGTGTGCACACCCCCCGGTCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
710 CATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
17808269 CCAGTGATGCTCCGGCGAAGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
774 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * * *
17808334 AGCATGTGCTACAGCAAAACTTGGTCCAGTCTGATCTTAGACTTGGAATGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
17808395 CTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * *
17808460 TGGCCAGAGGGATGGGATGCGCAAGTCAGGGCTCGACCGAGTTCCCCTCTGCGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
17808525 TACAGTCGCAACCCTCGGTCAGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTTGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17808589 ACCGACGAAACGAGC-GGACGGGTGGGCGGGCGGGCACGACGCCGGCTAGAGAGACGGGATGCGC
195 ACCGACGAAACGAGCGGGAC----GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
17808653 AAGCCATGCATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17808718 CATTTTTATGGTTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
17808783 ACGGCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTT
* * *
17808847 CTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTCTT-TTGGCATGCAT
450 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCAC
* * * * *
17808911 AAAAAAGTTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* **
17808976 TTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCA
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
17809041 TGAGTTCTTGAGGTTTGATTAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * ** *
17809106 ACATCATGTGCGCACACCCCCTAGCACCCCCTATCGCCAGAACCGTAATGCCGTCGGTCAGGTTC
709 ACATCATGTGCGCACACCCCC-CGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
17809171 TACGGCGATGCTCCGACGACGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCC
773 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * * **
17809236 CAGCATGTGCTGCCATAACCCTCGGT-CTGATTTGATCTTAGACTGGGAATGAACTCCATATG
838 CAGCATGTGCTGCCGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
17809298 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGTGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17809363 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCATGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * *
17809427 CTACTGCCACAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17809492 ACTGATGAAACAAAC-GGACGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
17809556 CGTGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTCATATTTCTGCATACCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17809621 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAAACCA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * * * *
17809686 CTCGTTTTCTATTTTTCATGATTCTCAAAACTTTCTGCAGG-TCGGGATTTTTTAAAAATTTTTC
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCAGGATTTTTTAAAATTTTTTC
* *
17809750 GAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTGTTTGGCTTGCACAA
454 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTG-TTGGCATGCACAA
**
17809815 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCTCCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17809880 TCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17809945 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
17810010 ATCATGTGTGCACACCCCCCCCCGTTCCCCCCGATCGCCTGAACCCCAATGCCGCCGGTTAGGTT
711 ATCATGTGCGCACA---CCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * *
17810075 CTCCGGTGATG-TCCTGGCGATGGTGCCCTGATGAAGAAAAATGCAGCACCAGGACATGCCCGAG
772 CTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * * *
17810139 CCTAGCATGTGCTGTCGAAACCCTCGGTCCGGTCCAATCTTAGACTGGTAATGAACTTCGTATG
836 CCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
17810203 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAGCGAGTGTGCGGTCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17810268 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT--CCC-C--C-T-AT----A-CG
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
17810321 TGCTGCCGCAACCCTTGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
17810386 CCGACG--A--A-----ACGAGTGGGCGGGCACTACGTTGGCCAGAGAGACGGGATACGCAAGCC
196 CCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17810442 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACTTGCCAATTCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
17810507 TTATGGCTTCTAAATTCATACAATGGTTCCTTAAGCCTTCTCGTGAAGTTTCATGGGAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
17810572 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTCGG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA
17810637 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
17810701 TTCAGCTAAAAACTAGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
17810766 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17810831 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCACACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
17810896 GTGTGCACACCCCCCTGGCCCCCCCGATTGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCAGT
716 GTGCGCACACCCCCC--GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * *
17810961 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCAT
779 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * ** * *
17811026 GTGCTGCCGCAACACTCGGT-TTGGCTCGATCTTAGATTGGGAATGAACT
844 GTGCTGCCGCAACCCTCGATCCAGTC-CGATCTTAGACTGGGAATGAACT
17811075 TCGTATGCCT
Statistics
Matches: 7205, Mismatches: 761, Indels: 205
0.88 0.09 0.03
Matches are distributed among these distances:
878 8 0.00
879 130 0.02
880 4 0.00
881 197 0.03
882 10 0.00
883 54 0.01
884 47 0.01
885 672 0.09
886 1 0.00
887 1 0.00
888 2 0.00
889 69 0.01
890 189 0.03
891 5 0.00
892 179 0.02
893 65 0.01
894 4 0.00
895 5 0.00
896 60 0.01
897 860 0.12
898 764 0.11
899 1289 0.18
900 842 0.12
901 4 0.00
902 208 0.03
903 977 0.14
904 188 0.03
905 368 0.05
906 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:17805703 original size:26 final size:26
Alignment explanation
Indices: 17805674--17805726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17805664 CCAGTCTGAT
17805674 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17805700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17805726 C
1 C
17805727 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17806601 original size:26 final size:26
Alignment explanation
Indices: 17806572--17806624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17806562 CCAGTCCGAT
*
17806572 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17806598 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17806624 C
1 C
17806625 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17808407 original size:26 final size:26
Alignment explanation
Indices: 17808369--17808421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17808359 CCAGTCTGAT
**
17808369 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
17808395 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
17808421 C
1 C
17808422 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:17809308 original size:26 final size:26
Alignment explanation
Indices: 17809272--17809324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809262 CTGATTTGAT
17809272 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17809298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17809324 C
1 C
17809325 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17810217 original size:26 final size:26
Alignment explanation
Indices: 17810177--17810229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17810167 CCGGTCCAAT
* *
17810177 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17810203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17810229 C
1 C
17810230 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17812451 original size:26 final size:26
Alignment explanation
Indices: 17812413--17812465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17812403 CCGGTCCGAT
* *
17812413 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17812439 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17812465 C
1 C
17812466 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17814236 original size:26 final size:26
Alignment explanation
Indices: 17814185--17814237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17814175 CCTGTCCGTT
*
17814185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17814211 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17814237 C
1 C
17814238 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17815101 original size:26 final size:27
Alignment explanation
Indices: 17815056--17815109 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
17815046 CTGGTCCAAT
* * *
17815056 CTTAGGCTGGGGAATGAACTCCCTATG
1 CTTAGACTGGGGAACGAACTCCATATG
17815083 CTTAGACT-GGGAACGAACTCCATATG
1 CTTAGACTGGGGAACGAACTCCATATG
17815109 C
1 C
17815110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (27 bp):
CTTAGACTGGGGAACGAACTCCATATG
Found at i:17816006 original size:26 final size:26
Alignment explanation
Indices: 17815966--17816018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17815956 CTGGTCCGAT
* *
17815966 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17815992 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17816018 C
1 C
17816019 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17817768 original size:26 final size:26
Alignment explanation
Indices: 17817738--17817790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817728 CCGTTCTGAT
*
17817738 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17817764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17817790 C
1 C
17817791 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17819421 original size:26 final size:26
Alignment explanation
Indices: 17819392--17819444 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17819382 CTAGTCCGAT
*
17819392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17819418 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17819444 C
1 C
17819445 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17820323 original size:26 final size:26
Alignment explanation
Indices: 17820287--17820339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17820277 CTGGTCTGAT
*
17820287 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17820313 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17820339 C
1 C
17820340 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17820918 original size:904 final size:902
Alignment explanation
Indices: 17817764--17829320 Score: 14530
Period size: 902 Copynumber: 12.8 Consensus size: 902
17817754 GCTCCGTATG
*
17817764 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-A--CGGGCGGG
* * *
17817829 CGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGT
62 CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * *
17817894 GGGTTTAAGCACATCTTCATATTTCTTCGTGCCAATGCAATTTTTATTGCTTGTAAATTCACACA
127 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
17817959 ATGGTCCCTTAAGCCTTCACATGAA-TCTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
192 ATGGTCCCTTAAGCCTTCACGTGAAGT-TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* ** * *
17818023 TTTCAAAACTTTTTACGGTTTAGGATTTTTTGAAATTTTTTCTGAAGGAGTTTTGGCCCCAAACT
256 TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17818088 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATACACAAAAATATTCAGCTAAAAACTCGAAGTG
321 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
17818153 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAG
386 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
17818218 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAG
451 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
17818283 GGGGCCAATATAAGGGCCCAA-TACCAGCACCCATCGTACATCATGGGCGCACACCCCCCCCGGC
516 GGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-
** ** * * * *
17818347 CCCCCCGATCACCGGAACCCCAATGCCACCTGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGC
577 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
* * * ***
17818412 CTCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGGGGGTGCTGCCGCAACCCTCAG
642 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* * *
17818477 G-CCGGTCCGATCTTAGACTGGGAAAGAACT-CATATGCTTAGACTGGGAATGAACTCCGTATGC
706 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
17818540 CTAAGTCAACCCAGGAAACAAGCGTGTGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-C
771 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * ** * ** *
17818604 TGGGATCGGCCGGGTCCCCCTCTGCCTACTGTCGATCCTACTGTCGTAACCCTTGGTCTGGTCTG
836 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTG
17818669 AT
901 AT
17818671 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AGAACGAGCGG-CGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGACGGGCGGGCGG
* * ** * *
17818734 GCGGGCACAACACCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGC
65 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
17818799 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
17818864 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * ** * *
17818929 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGCACTTTTGGCCCCAAACTTGGT
260 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
17818994 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
17819059 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * ** * *
17819124 CCTGTAAAAACTCAAATTCTCTTTAAGAGGGTGTTTGTTCTTGAGGTGTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
17819189 CCAATATAAGGGCCAAGTACCATCACTCATCACACATCACGTGCGCACAACCCCCCCTCGGGGCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A--CCCCC-C-GGCCC
* * * *
17819254 CCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTTCGGTGATGCTCCGGCAATGGTGCCCC
580 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC
* * * * *
17819319 GGTGAAGAAAAATGCGGCACCAGAACATG-CTCGAGACCAGCATGTGCTGTCGTAACCCTCGGTC
645 GGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
17819383 TAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
709 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
17819448 AGTCAACGCACGAAATGAGCGTGCGAGCGCTTAGCCGGCCTGAGGGGTGGGATGCGAAAGCCGGG
774 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * *
17819513 GATCGACCGGGTCCCCCTTTGCATGCTGTCAATCCTACTATCGTAACCCTCAGTTCGGTCTGAT
839 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
*
17819577 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACG-AA--A-C-GA---GCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * *
17819634 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATAGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
17819699 TTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
17819764 CCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * * ** * * *
17819829 AAAATTTTTGCAGTTCCAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACCTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
17819894 GACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
17819959 GATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
17820024 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGA
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
17820089 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCCTCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGA
* * * * *
17820154 TCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCAGTGATCCTCCGGTGATGGTGCCCCGACGA
585 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGA
** * * *
17820219 AGAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCT
650 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
*
17820284 GATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** *
17820349 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCGAGATGCATAAGCCGGGGATCGG
780 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * *
17820414 TCGGGTCACCCTCTACGTGCTGCCAATCCTGCTATCGCAACCCTCTGTCCGGTTTGAT
845 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * *
17820472 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGTGCGGACGGGTGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * *
17820537 CGGGCACTAAGCTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
17820602 TTAGGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTTTATTGCTTGAAAATTCATACAAT
131 TTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAAT
* * * *
17820666 GATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
17820731 TGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTACGGAAGGAGTTTTGGCCCCAAACTTGG
259 TAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17820796 TAGACGTGATCCTTGTTTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17820861 AAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
17820926 ACCTGTAAAATATAAAATGCTTTTTAAGGGGGTGTGAGTTCACGAGGTTTGATGAGGGATA-GGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
17820990 GCCACTATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCTCGGGCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCCC
* * * * * * *
17821054 CGATCGTCGGAACACCAATGCCGCCGGTCAGGTTCTTCGGAGATGGTCCGACGATGGTGCCCCGA
582 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGG
* * *
17821119 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* *
17821184 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** * * * * *
17821249 CAACCCATGAAATGAGTGTATGGTCGCTCAGCTGGCCAGA-GGGTGAGATGCGCAAGCTGGGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * ** *
17821313 AGGTCAGGTCCCACTCTGTGTGCTACCGATCCTGCTATTGTAACCCTCAGTCCGGTCTGAT
842 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * * *
17821374 CCTAGACTCGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAAC--G-GG-CGGGTGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * * *
17821435 CAGGCACTACGCCGGCCAGCGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*** *
17821500 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGA
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
17821565 TCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * *
17821630 AAACTTTTTACTGTACGGGATTTTTTAAAATTTTTTC-AAAGGGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGT
* * *
17821694 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAATACTTGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
17821759 AGATTTTGTGACCATTTTAAAAAACTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
17821824 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
17821889 CCAATATAAGGGCCAAGTATCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGGCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCC
** * *
17821954 GATCACCGGAACCTCAATGCCGT---T--GG---TCAGGT--T-CTCCGGCGATGGTGCCCCGGC
583 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGC
* *
17822008 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGCCCAGT
648 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC-T----C-G-
*
17822073 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAGTCCGTATGCTTAGACT
706 --G----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
17822138 GGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
752 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * ** * *
17822203 GGGGCGGGGTGTGCAAGCCGGGGATCGA-CCGGTCCCCCTCTGTGCGCTATCGATCCTGCTGCTG
817 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
* * * *
17822267 CAACACTCGGTCCAGTCCGAT
882 CAACCCTCAGTCCGGTCTGAT
*
17822288 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC-GA-------GCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
*
17822345 CGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17822410 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
17822475 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAACACAACTCATTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* *
17822540 AAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
17822605 GATGTGATCCTTGTATTTTTGTTGGCTTTCACAAAACAATTCAGCTAAAAATTC-AATGTGTACA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACA
* *
17822669 AGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17822734 CCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
17822799 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGACCCCACCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCG
* * * *
17822863 ATCGTCGGAACCCCAAAAT-CCATCGATCAGGTTCTCC---G--G-T-----GATGGTACCCCGA
584 ATCGTCGGAACCCC--AATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGG
* ** * * * *
17822916 CGAAGAAAATTATGACACCAGCACATGGCC-GAGCCTAGCATGTGCTACCGCAACCCTCGGTCCG
647 CGAAGAAAAATGCGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * * *
17822980 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGTCGAAG
711 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * **
17823045 TCAACCCACGAAACGAACGTGCGGGTGCTCAGTTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
776 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * * * * * * * *
17823110 TCGGTCGGGTCCCCCTCTGTATGCAGCTGATCCTGCTGCCGTAACCCTCAATCTGATCCGAT
841 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * * *
17823172 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGA----CGGACAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * *
17823233 CGAGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGGGTGGTTGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
17823298 TTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGA
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
17823363 TCCCTGAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * * * * *
17823428 AAACGTTTTGCTGTACAGGATTTTTTAAAATTTTGTCGG-AGGTAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGT
* * * *
17823492 AGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAATACTCGTAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17823557 AGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
17823622 CCTGTAAAATCTCAAATGCTTTTTAAGCGGGTGTGAGCTCTCGAGGTTTGATGTGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
17823687 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCCGGTGCCCT
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-CCCCC
* * *
17823752 TGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC---G--G-T-----GATGGTGCCCCGA
582 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGG
** * * *
17823806 CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGA
647 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* *
17823871 TCAGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
17823936 CAACCCACGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGATGGGCGGGATACGCAAGCCGCGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
17824001 CGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTTCGGTCAGGT
842 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * * * *
17824062 CTTAGACTGGGGATGAACTCCGAATGCCTAAGCAAACCGATGAAATGAGCGGAAAGGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG--ACGGGCGGGCG
* *
17824127 GGC-GGCACTACGCCAGCCAGAGAGAC-GGATGCGCAAGCCGGTGGATCGATAGGGTGGTAGGCG
64 GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTG
* *
17824190 GCGTGTAGGCCACATCTTCATATTTTCTGCATG-CAATGCCATTTTTGTGGCTTGTAAATTCATA
128 G-GTTTAGG-CACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
17824254 CAAT-GCCCCTTAAGCCTTCACGTGGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTCAT
190 CAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCA-
* ** ** * * *
17824318 TGA-TTTTGAAACTTTTGGCCCCTTC-GGATTTTTGAAAATTTTTTCGAAAGGATTTTTGGCCCC
252 TGATTTTTAAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
17824381 AAAGTTGGTAGACAATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACCT
316 AAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CT
* * * *
17824446 CGATGTGTACAAGATTTTGTGACCATTTGAAAAAAAGAGTCCCCA-TTCAGACACCTTAAGGGCT
379 CGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
17824510 ACCTGGCCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGA
443 A-CTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
17824575 AGAGGGACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACT
506 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-
* * * * *
17824640 CCCCCGACCCCCCCGATCGTTGTAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGAC
570 CCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGC
* * * *
17824705 GATGGTGCCCCAGCGAAGAAAAATGCGACACCAGCACATG-GTCGAGCCCAGCATGTGTTGCCGC
634 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGC
* * * *
17824769 AACCCTCGGTCCGGTCCAATCTTAGACTGGCAATGAACTCCGTCTGCTTAGACTGGGAATGAA--
698 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
17824832 -CG-A---CTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATG
763 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * *
17824892 CGCAAGCCGGGGATCAATCAGGTCCCCCTCTGCATGCTGCTGTTCCTACTACCGCAACCCT-TGA
828 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-
* *
17824956 TCCAGTCCGAT
892 TCCGGTCTGAT
* * *
17824967 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * *
17825032 CGGGCACTATGCCTGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17825097 TTAAGCACATCTTCATATTTCTGCATGCC-ATGTCA-TTTTGTGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * ** * * *
17825160 GCCCTTAGGAAC-TCAAATGAAGGTTTCATGGCAAAACAACTC-ATTTCTATTTTTCATGATTTT
196 TCCCTTAAG-CCTTCACGTGAA-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * *
17825223 T-AAACTTTTTGGGGTTTCGGGA-TTTTTGAAA-TTTTTCGGAAGGATGTTTTGCCCCCAAAGTT
259 TAAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTT
* *
17825285 -GTAGATCATGATCCCTTGTA-TTTTGTTGGTAATGCAC-AAAAAATTCCAGCCTAAAAACTCGA
322 GGTAGA-CGTGAT-CCTTGTATTTTTGTTGG-CATGCACAAAAAAATT-CAG-CTAAAAACTCGA
*
17825347 TGTGTACAAGATTTTGTGGACCA-TTGAAAAAA-TAGT-CCCATTTCAGACAC-TTAATGGGCTT
382 AGTGTACAAGATTTTGT-GACCATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAAT-GGC--
17825408 TACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTT-A--GGGTGTGAGTTCTCGAGGTTTTGA
442 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTG-
* *
17825469 AAAGAGGGACA-GGGGCCAATAATAAGGGCCAAGTAGCCCAAGCACCCCAATCGCAACATCATGT
505 -ATGAGGGATAGGGGGCCAAT-ATAAGGGCCAAGTA--CC-AGCA-CCC-ATCGC-ACATCATGT
* * * *
17825533 GCACACACTCCCCCGACCCCCCGATCGTTGTAACCCCAATG-CGT-GGTCAGGTTCTCCGGTGAT
562 GCGCACAC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
* *
17825596 GCT-CGACGATGGTGCCCCGGCGAAG-AAAATGCAGGCACCAGCACATG-GTCGAGCCCAGCATG
626 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGC-GGCACCAGCACATGCCT-GAGCCCAGCATG
* * * * *
17825658 TGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGCAATGAACTCTGTATGCTTAGACTGG
689 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
17825723 GAATGAACTCCGTATGACTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAACCTGCCAGAGG
754 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *
17825788 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCC-ATTCCTACTACCGC
819 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTACCGC
* *
17825852 AACCCT-TGATCTGGTCTGAT
883 AACCCTCAG-TCCGGTCTGAT
* * *
17825872 -TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * *
17825936 CGGGCACTATGCCTGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17826001 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
17826066 TCCCTTAAGACTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
** * * *
17826131 AAACTTTTTTGGGTTCGGGATTTTTGAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAAGTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
17826196 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
17826261 GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
17826325 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGTGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
17826390 CAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTACACACACCCCCCGACCCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGA
* * *
17826455 TCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGA
585 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGA
* * * *
17826520 AGAAAAAT--GTCA-CA-C-CAT--C-GAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGATCC
650 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* * * * *
17826577 AATCTTAGACTGGCAATGAACTCCATATGCTTGGACTGGGAATGAACTCTGTATGCCTAAGTCAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * *
17826642 CCCACGAAACGAGTGCGCGGGTGCTCAGCCAACCAGAGGGGTGGGATGCGCAA-CCTGGGGATTG
780 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCG
** * * * * * *
17826706 ATCGGGTCCCCCTCTATGTGCTGCTGATCCTGTTGCCGTAACCCTCGGTCCGGTCTGAC
844 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * * * * * *
17826765 CTTAGACTGGGAATGAACTCCGTAGGCCTAATCCAATCGATGAAACAAGGGGGCTGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
*
17826830 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17826895 TTAGGCACATCTTCATATTTCTGCGTTCCAATGACATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17826960 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * *
17827025 AAACTTTTTACGGTTCGAGATTTTTTCAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
17827090 GACATGATCCTTGTATTTTTTTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
17827155 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17827220 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
17827285 TAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATATGCGCACACCCCCCGGGGCCCCCCG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCG
* * * * ** * * *
17827350 ATCGTCGAAACCCCAACGTCGTTGGTCAGGTTCTTTGGCGATGCTCCGGCAATGGTGCCCCGGTG
584 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCG
* * * **
17827415 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTCCTAACGCAACCCTCGATCCGGTT
649 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G--
*
17827480 CGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
706 -G----T---CT--G---G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * **
17827545 GGAATGAACTCCGTATGCCTATGTCAACGCACGAAACAAGCGTGCGGGTGCTCAGCCAACCAGAG
753 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * * * * *
17827610 GGGTGAGG-TGCGTAAGCTGAGGATC-AGTTGGGACCCCCTCTGTGTGCTGCCGTTCTTGCTGCT
818 GGGCG-GGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
*
17827673 GCAACTCTC-GATCCGGTCTGAT
881 GCAACCCTCAG-TCCGGTCTGAT
* * *
17827695 CTTAGATTGGGAATGAACTCCCTATGCCTAAGCCAACTGACG-AA--A-C-GA---GCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* * * *
17827752 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGATGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
17827817 TTAGGTACATCTTCTTATTTCTGTAGGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17827882 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * * * *
17827947 AAACTTTTT-TGGCTTCGGGATTTTTGAAAATTTTTTCGGAAGGATTTTTTGCCCCAAAGTTGGT
261 AAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
17828011 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
17828076 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17828141 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATATGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
17828205 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * * * * * * *
17828270 ATCATTGTAATCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTG
584 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCG
* * * *
17828335 AAGAAAAATGCGGCACCAGCACATG-GTCGAGCCCAGCATGTGCTTCTGCAACCCTCGGTCCGGT
649 AAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
17828399 CCAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
713 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
17828464 AACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** * **
17828529 GATCGGGTCCCCCTCTACGTGCTGCC-ATTCCCACTACCGTAACCCTC-GATCCGGTCCAAT
843 GATCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTACCGCAACCCTCAG-TCCGGTCTGAT
* *
17828589 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
* *
17828654 CGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17828719 TTAGGCACATCTTCAGATTTCTGCATGCCAATGCCATTTTTATGGCTTATGAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
17828784 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-T
* * * *
17828849 AAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA-G-G--TGGGCCCCAAACTTGGT
260 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
17828910 AGACGTGATCCTTGAATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
17828974 AGATTTTGTGACCATTTGAATAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
17829038 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
17829103 GTCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCGCACACCCCGTCGATG-CCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG--GCCCC
** * *
17829167 CCGATCACCGAAACCCCAATGCCGTCGGTTAGGTTCTCC---GA-----C-G-GA-GGTGCCCCG
581 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
* * * * **
17829221 GCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCCTTAGTCT
646 GCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG-CAACCCTCGGTCT
*
17829286 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17829321 CTAAGCCAAC
Statistics
Matches: 9395, Mismatches: 997, Indels: 533
0.86 0.09 0.05
Matches are distributed among these distances:
883 113 0.01
884 92 0.01
885 6 0.00
887 3 0.00
888 527 0.06
889 61 0.01
890 334 0.04
891 26 0.00
892 7 0.00
893 210 0.02
894 589 0.06
895 526 0.06
896 173 0.02
897 474 0.05
898 561 0.06
899 775 0.08
900 160 0.02
901 170 0.02
902 948 0.10
903 412 0.04
904 739 0.08
905 462 0.05
906 197 0.02
907 130 0.01
908 40 0.00
909 67 0.01
910 471 0.05
911 3 0.00
912 116 0.01
913 3 0.00
914 181 0.02
915 21 0.00
916 3 0.00
917 3 0.00
918 1 0.00
919 4 0.00
920 103 0.01
921 88 0.01
922 395 0.04
925 1 0.00
927 1 0.00
928 3 0.00
929 6 0.00
930 187 0.02
931 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAA
GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
Found at i:17821226 original size:26 final size:26
Alignment explanation
Indices: 17821190--17821242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17821180 CTGGTCTGAT
17821190 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17821216 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17821242 C
1 C
17821243 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17822107 original size:26 final size:26
Alignment explanation
Indices: 17822078--17822161 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
17822068 CCAGTCCGAT
17822078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17822104 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17822130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17822156 CCTTAG
1 -CTTAG
17822162 TCAACCCACG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
26 50 0.91
27 5 0.09
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17823906 original size:26 final size:26
Alignment explanation
Indices: 17823877--17823929 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17823867 CCGATCAGAT
*
17823877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17823903 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17823929 C
1 C
17823930 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17825727 original size:26 final size:26
Alignment explanation
Indices: 17825687--17825738 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17825677 CCGGTCCAAT
*
17825687 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
17825713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
17825739 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:17827522 original size:26 final size:26
Alignment explanation
Indices: 17827486--17827562 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
17827476 GGTTCGATCA
*
17827486 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17827512 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17827538 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17827563 CTATGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17828433 original size:26 final size:26
Alignment explanation
Indices: 17828404--17828456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17828394 CCGGTCCAAT
17828404 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
17828430 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
17828456 C
1 C
17828457 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:17830032 original size:26 final size:26
Alignment explanation
Indices: 17829993--17830044 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17829983 TCTGATCTGA
*
17829993 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
*
17830019 TCTTAGACTAGGAATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
17830045 GGCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:17830922 original size:26 final size:26
Alignment explanation
Indices: 17830893--17830945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830883 CCGGTCTGAT
*
17830893 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17830919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17830945 C
1 C
17830946 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17831830 original size:26 final size:26
Alignment explanation
Indices: 17831794--17831846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17831784 CCGATCCGAT
*
17831794 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17831820 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17831846 C
1 C
17831847 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17831952 original size:901 final size:897
Alignment explanation
Indices: 17829282--17831988 Score: 4037
Period size: 899 Copynumber: 3.0 Consensus size: 897
17829272 TAAACCCTTA
* *
17829282 GTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGA----G
1 GTCTGGTCTGATCTTAGACTGGGAATGAAC-TCTTATGCCTAAGCCAACTGACGAAACGAGCGGG
* * *
17829343 CGAGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGT
65 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
17829408 AGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
130 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
17829473 TACAATGGTCCCTTAAGCCTTTACGTCAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCAT
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
17829538 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTGAAAAGTTTTTCGGAAGGCATTTTTGCCCCAA
260 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCAA
* *
17829603 AGTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAGCTAAAAATTCGAA
325 AGTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAA
*
17829668 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTAAATGGCTACTGG
390 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGG
* * * *
17829733 CAGTAAACCTGTAAAATCTGAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
455 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
17829798 TAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTCCGCACACCCCCCCGA
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCTCGG
* *
17829863 CCCCCTCGATCGTCAGAACCCCAATGCTGCCGGTCAGG---T------TG-TCCGACGATGGTGC
585 CCCCCCCGATCGTCGGAACCCCAATGC-GCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGC
* * * * * * * *
17829918 CCCGACTAAGAAAAATACGGCATCAGCACATGCCCCAGCCCAGCATGTGTTGTCGTAACCCTCGG
649 CCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
17829983 TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTAGGAATGAACTCTGTATGGC
714 TCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCC
* * * * * * * *
17830048 TAAGTCATCCCACGAAACGAGCCTACGGGCGTTCAACCGGCCAAAAGGGCAGGATGCGCAAGTCG
779 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCA
* * * * * ** * *
17830113 GGGATCGGTTGGGTTCCCCTCTGCGTGCTGCCGATCTTGCTACTGCAACCTTTG
844 GGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCG
* * * *
17830167 GTCTGGTCTGATCTTAGACTGGGAATGCACTCTGTATGCCTAAGCCAACCGAGGAAACAAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCT-TATGCCTAAGCCAACTGACGAAACGAGCGGG
* *
17830232 CGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATCGGAG-GG
65 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GTGG
* * *
17830296 TAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAATC
129 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
17830361 AAACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
194 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
17830426 CGATTTTTGAAACTTTGTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCA
259 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCA
*
17830491 AAGTT-TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAATTCGA
324 AAGTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGA
*
17830555 AGT-TGACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTAAATGGCTACT
389 AGTGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACT
* *
17830619 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
453 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * *
17830684 GATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTATGCACAACCCCTC
518 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCTC
* * * *
17830749 GGCCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGG
583 GGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGG
*
17830814 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
646 TGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
17830879 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
711 CGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTAT
* * * * *
17830944 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTGGCCAGAGGGGCGGAATGCGCAAG
776 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
*
17831009 CCAGGGATCGGTCGGGTCCCCCTCTCCGTGCTGTCGATCCTGCTACCACAACCCTCG
841 CCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCG
* *
17831066 GTCTGGTCTGATCTTAGATTGGGAATGAACTCCTTATGCCTAAGCCAATTGACGAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACT-CTTATGCCTAAGCCAACTGACGAAACGAGCGGG
* *
17831131 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGT
65 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
17831196 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
130 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
17831261 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * **
17831326 GATTTTTGAAACTTTTTGCAGTTCGGGGTTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGAACCA
260 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTGGCCCCA
* * * *
17831390 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGA
324 AAGTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGA
* *
17831455 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTG
389 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTG
*
17831520 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGG
454 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
17831585 ATAGGGGGCCAGTATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCTCTC
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCC-CTC
*
17831650 GGCCCCCCCGATCGTCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
583 GGCCCCCCCGATCGTCGGAACCCCAATG-CGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGG
* * *
17831715 TGCCTCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
646 TGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
17831780 CGGTCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTAT
711 CGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTAT
* *
17831845 GCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAG
776 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
17831910 CCAAGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCA
841 CCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCG
* *
17831967 GTCCGGTCTGATCTTAAACTGG
1 GTCTGGTCTGATCTTAGACTGG
17831989 TAGATGTGAT
Statistics
Matches: 1632, Mismatches: 164, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
884 2 0.00
885 51 0.03
887 1 0.00
888 265 0.16
889 243 0.15
890 1 0.00
891 1 0.00
898 4 0.00
899 520 0.32
900 231 0.14
901 312 0.19
902 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCTTATGCCTAAGCCAACTGACGAAACGAGCGGGC
GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCAAA
GTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCTCGGC
CCCCCCGATCGTCGGAACCCCAATGCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCC
CGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
CGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
AGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCG
Found at i:17832413 original size:26 final size:26
Alignment explanation
Indices: 17832384--17832436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17832374 CCGATCCGAT
*
17832384 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
* *
17832410 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
17832436 C
1 C
17832437 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:17832518 original size:590 final size:592
Alignment explanation
Indices: 17831389--17832578 Score: 1803
Period size: 590 Copynumber: 2.0 Consensus size: 592
17831379 TTTTGGAACC
* * *
17831389 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
1 AAAC-TGGTAGACGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
17831454 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACT
65 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACT
* *
17831519 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGG
130 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAG
* * * *
17831584 GATAGGGGGCCAGTATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCTCT
195 GATAGGGGGCCAATATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCTCC
* * *
17831649 CGGCCCCCCCGATCGTCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATG
260 CGGCCCACCCGATCGCCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATA
* *
17831714 GTGCCTCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
325 GTGCCTCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
* * ** *
17831779 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTA
390 TCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCTGTA
** *
17831844 TGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAA
455 TGCCTAAGTCAACCCACAAAACGAGCGTACAAGCACTCAATCGGCCAGAGGGGCGGGATGCGCAA
** * *
17831909 GCCAAGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGT
520 GCCAAGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTACTACCACAACCCTCAGTCCGAT
17831974 CTGATCTT
585 CTGATCTT
*
17831982 AAACTGGTAGATGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
1 AAACTGGTAGACGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
17832047 CGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGCCCCCATTTCAGACATTTTAATGGTTACTG
66 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACTG
*
17832111 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
131 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAGG
* * * * *
17832176 ATATGGGGCCAATATAAGGGCCAAGTGCTAGAACCCATCGCACATCATGTGCGCACGCCCC-CCC
196 ATAGGGGGCCAATATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCTCCC
* *
17832240 GGCCCACCTGATCGCCGGAACCCCAATG-CAGAC-GGTCAGGTTCTCCGGTGATGCTCCGACGAT
261 GGCCCACCCGATCGCCGGAACCCCAATGTC-G-CTGGTCAGGTTCTCCGGCGATGCTCCGACGAT
*
17832303 AGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
324 AGTGCCTCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
17832368 CTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCTGT
389 CTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCTGT
* * * * *
17832433 ATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCACTCAGTCGGCCAGAGGGGTGGGATGCGCA
454 ATGCCTAAGTCAACCCACAAAACGAGCGTACAAGCACTCAATCGGCCAGAGGGGCGGGATGCGCA
** ** * * ** ** *
17832498 AGCCGGGGATCGTTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGTAACCCTTGGTCTGA
519 AGCCAAGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTACTACCACAACCCTCAGTCCGA
17832563 TCTGATCTT
584 TCTGATCTT
*
17832572 ATACTGG
1 AAACTGG
17832579 GAATGAACCC
Statistics
Matches: 537, Mismatches: 58, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
589 1 0.00
590 300 0.56
591 150 0.28
592 82 0.15
593 4 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.23
Consensus pattern (592 bp):
AAACTGGTAGACGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCACTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAAGG
ATAGGGGGCCAATATAAGGACCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCTCCC
GGCCCACCCGATCGCCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATAG
TGCCTCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
CGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCTGTAT
GCCTAAGTCAACCCACAAAACGAGCGTACAAGCACTCAATCGGCCAGAGGGGCGGGATGCGCAAG
CCAAGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTACTACCACAACCCTCAGTCCGATC
TGATCTT
Found at i:17832635 original size:12 final size:12
Alignment explanation
Indices: 17832618--17832651 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17832608 CATGAAACGA
17832618 GCGGGCAGGCAG
1 GCGGGCAGGCAG
*
17832630 GCGGGCAGGCGG
1 GCGGGCAGGCAG
*
17832642 GCGAGCAGGC
1 GCGGGCAGGC
17832652 GGGCACTACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.26, G:0.59, T:0.00
Consensus pattern (12 bp):
GCGGGCAGGCAG
Found at i:17832652 original size:12 final size:12
Alignment explanation
Indices: 17832622--17832655 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17832612 AAACGAGCGG
* *
17832622 GCAGGCAGGCGG
1 GCAGGCGGGCGA
17832634 GCAGGCGGGCGA
1 GCAGGCGGGCGA
17832646 GCAGGCGGGC
1 GCAGGCGGGC
17832656 ACTACGCCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.26, G:0.59, T:0.00
Consensus pattern (12 bp):
GCAGGCGGGCGA
Found at i:17833335 original size:26 final size:26
Alignment explanation
Indices: 17833306--17833358 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17833296 CTGGTCCGAT
*
17833306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17833332 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17833358 C
1 C
17833359 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17833927 original size:904 final size:912
Alignment explanation
Indices: 17831982--17834273 Score: 3195
Period size: 904 Copynumber: 2.5 Consensus size: 912
17831972 GTCTGATCTT
* * *
17831982 AAAC-TGGTAGATGTGATCCCTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
17832046 ACGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGCCCCCATTTCAGACATTTTAATGGT-TAC
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GTCTAC
17832109 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGGTGTGAGTTCTCGAGGTTTGATGA
130 TGGCAGCAAACC-GTAAAATCTCAAATGCTCTTTAAGA-GGGTGTGAGTTCTCGAGGTTTGATGA
* * * * * *
17832173 AGGATATGGGGCCAATATAAGGGCCAAGTGCTAGAACCCATCGCACATCATGTGCGCACGCCCCC
193 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
17832238 CCGGCCCACCT-GATCGCCGGAACCCCAATGCAGACGGTCAGGTTCTCCGGTGATGCTCCGACGA
258 CCGGCCC-CCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGA
* * * *
17832302 TAGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
322 TGGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
17832367 CCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATAAACTCTG
387 CCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTG
** * * *
17832432 TATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCACTCAGTCGGCCAGAGGGGTGGGATGCGC
452 TATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAATCGGCCAGAGGGGCGAGATGCGC
* * * * *
17832497 AAGCCGGGGATCGTTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGTAACCCTTGGTCTG
517 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTACGACCATAACCCTCGGTCTG
* * *
17832562 ATCTGATCTTATACTGGGAATGAACCCCGTATGCCTAAGCCAATCCCATGAAACGAGCGGGCAGG
582 ATCTGATCTTAGACTGGCAATGAACCCCGTATGCCTAAGCCAA-CCCA-G-AACGA----GAAGG
* *
17832627 CAGGCGGGCAGGCGGGCGAGCAGGCGGGCACTACGCCAGCCAGAGAGATGGGATACACAAGCCTG
640 CAGGCGGGCAGGCGGGC-AG-AGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCTA
* * *
17832692 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGCCATTTT
703 TGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
17832757 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGGCT
768 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGGCT
* * **
17832822 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGAG
833 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTCGGAG
*
17832887 AGGAGTTTTAGCCCC
898 AGAAGTTTTAGCCCC
** * *
17832902 AAACTTTTTAGACGTGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
17832967 AAGTGTATAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATATCTACT
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACT
* *
17833032 GGCAGCAAACC-TAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTAATGAGGG
131 GGCAGCAAACCGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
17833096 ACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCC
196 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCC
* *
17833161 CGGCCCCCTCGATCGCCGGAACCCCAAT-CTCGCCGGTCAGGTTCTCCGATGATACTCCGATGAT
259 CGGCCCCCTCGATCGCCGGAACCCCAATGC-CGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* * * ** *
17833225 GGTGCCCCGGCAAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCCACTGCAACC
323 GGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* **
17833290 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT
388 CTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
** *
17833355 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCA
453 ATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAATCGGCCAGAGGGGCGAGATGCGCA
* * * * * * *
17833420 AGCTGGGGATCGGTCGGGTCCTCCTCTGCATGCTGCCGATCTTACGGCCATAATCCTCGAT-TCG
518 AGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTACGACCATAACCCTCGGTCT-G
* ** *
17833484 GTCTGATCTTAGACTGGCAATGAACTTCGTATGCCTAAGCCAA-CC-G-ACGA-AATG-A-GCGG
582 ATCTGATCTTAGACTGGCAATGAACCCCGTATGCCTAAGCCAACCCAGAACGAGAAGGCAGGCGG
* * * * *
17833543 GCGGGCGGGC-G-GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCC-ATGGATCGAT
647 GCAGGCGGGCAGAGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCTATGGATCGAT
**
17833605 AGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTG
712 AGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* *
17833670 TAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGAG-TCGTTTTCT
777 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACG-GCTCGTTTTCT
* * * *
17833734 ATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTCTTTCGGA-AGAATTT
841 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTCGGAGAGAAGTT
* *
17833798 TTGGGCCC
905 TTAGCCCC
* **
17833806 AAACTTGGTAGACATGATCCTTGTATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
17833871 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACT
* * *
17833936 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATG-GGTGTGTGGGTTCTCAAGGTTTGATGAG
131 GGCAGCAAACC-GTAAAATCTCAAATGCTCTTTAAGAGG-GTGTGAGTTCTCGAGGTTTGATGAG
*
17834000 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
194 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * *
17834065 AGGCCCCCTCGATCACAGGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGATGCTTCGGCGAT
259 CGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGAT
17834129 GGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
323 GGTGCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
17834194 CTCGGTCTGGTCCGATCTTAGACTGGTAATGAAATCCGTATGCTTAGATTGGGAATGAACTCTGT
388 CTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
*
17834259 ATGCCTAAGCCAACC
453 ATGCCTAAGTCAACC
17834274 GACAAAACGA
Statistics
Matches: 1219, Mismatches: 137, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
903 1 0.00
904 506 0.42
905 45 0.04
906 97 0.08
907 1 0.00
909 13 0.01
910 1 0.00
911 2 0.00
916 4 0.00
918 1 0.00
920 103 0.08
921 84 0.07
922 361 0.30
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (912 bp):
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACT
GGCAGCAAACCGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
GCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGT
GCCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
CCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAATCGGCCAGAGGGGCGAGATGCGCAAGC
CGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTACGACCATAACCCTCGGTCTGATCT
GATCTTAGACTGGCAATGAACCCCGTATGCCTAAGCCAACCCAGAACGAGAAGGCAGGCGGGCAG
GCGGGCAGAGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCTATGGATCGATAGGG
TGGTAGGTGGGTTCAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGGCTCGTTTTCTATTTT
TCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTCGGAGAGAAGTTTTAGCC
CC
Found at i:17834239 original size:26 final size:26
Alignment explanation
Indices: 17834210--17834262 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17834200 CTGGTCCGAT
*
17834210 CTTAGACTGGTAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
17834236 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17834262 C
1 C
17834263 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17834975 original size:740 final size:744
Alignment explanation
Indices: 17833491--17835023 Score: 2445
Period size: 740 Copynumber: 2.1 Consensus size: 744
17833481 TCGGTCTGAT
* * * *
17833491 CTTAGACTGGCAATGAACT-TCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCGG
* *
17833555 GCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
*
17833620 TTCAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTCAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
17833685 GTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
17833750 GAAACTTTTTATGGTTCGGGATTTTTTAAAATTCTTTCGGAAGAATTTTTGGGCCCAAACTTGGT
260 GAAACTTTTTA-GGTTCGAGATTTTTTAAAATTCTTTCGAAAGAACTTTTGGCCCCAAACTTGGA
*
17833815 AGACATGATCCTTGTATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACATGATCCTTGCATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
17833880 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAA
* * * *
17833945 CCTGTAAAATCTCAAATGCTCTTTATGGGTGTGTGGGTTCTCAAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGAG
*
17834010 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCTC
519 ACAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCTC
* * *
17834075 GATCACAGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTTCGGCGATGGTGCCTCGGC
584 GATCACAGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTTCGACGATGGTGCCCCGAC
* ***
17834140 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAAT
* *
17834205 CCGATCTTAGACTGGTAATGAAATCCGTATG
714 CCAATCTTAGACTGGGAATGAAATCCGTATG
* * *
17834236 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAACGGGCAGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCGGG
* *
17834301 CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
17834366 T-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TCAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
17834430 TCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
17834495 AAACTTTTTCA-GTTTGAGATTTTTTAAAATTTTTTCGAAAGCACTTTT-GCCCCAAAGTTGGAA
261 AAACTTTTT-AGGTTCGAGATTTTTTAAAATTCTTTCGAAAGAACTTTTGGCCCCAAACTTGGAA
* **
17834558 GACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACATGATCCTTGCATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
17834623 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAAC
* *
17834688 TTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGAGA
455 CTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGAGA
** * *
17834752 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCATACCCCCCA-GCCCCCTCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCTCG
*
17834816 ATCGCCA-GAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTTCGACGATGGTGCCCCGA
585 ATC-ACAGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTTCGACGATGGTGCCCCGA
*
17834879 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAA
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAA
17834944 TCCAATCTTAGACTGGGAATGAACA-CCGTATG
713 TCCAATCTTAGACTGGGAATGAA-ATCCGTATG
* * *
17834976 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
17835024 GCGTACGGGT
Statistics
Matches: 725, Mismatches: 58, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
739 1 0.00
740 194 0.27
741 85 0.12
742 163 0.22
743 31 0.04
744 131 0.18
745 119 0.16
746 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (744 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCGGG
CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TCAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTAGGTTCGAGATTTTTTAAAATTCTTTCGAAAGAACTTTTGGCCCCAAACTTGGAAG
ACATGATCCTTGCATTTTTCCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGAGAC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCTCGA
TCACAGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTTCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCC
AATCTTAGACTGGGAATGAAATCCGTATG
Found at i:17834986 original size:26 final size:26
Alignment explanation
Indices: 17834950--17835002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17834940 CCAATCCAAT
17834950 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
17834976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17835002 C
1 C
17835003 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17835878 original size:26 final size:26
Alignment explanation
Indices: 17835849--17835901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17835839 CTGATCCGAT
*
17835849 CTTAGACTGGTAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
17835875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
17835901 C
1 C
17835902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17836793 original size:26 final size:26
Alignment explanation
Indices: 17836743--17836793 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17836733 CCGGTCTGAT
**
17836743 CTTAGACCGAGAATGAACTTTGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
17836769 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACCGAGAATGAACTCCGTAT
17836794 TCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17837554 original size:898 final size:898
Alignment explanation
Indices: 17834236--17838142 Score: 5473
Period size: 898 Copynumber: 4.4 Consensus size: 898
17834226 AATCCGTATG
* * * *
17834236 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAACGGGCAGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGG
*
17834301 CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17834365 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
17834430 TCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
17834495 AAACTTTTTCA--GTTTGAGATTTTTTAAAATTTTTTCGAAAGCACTTTT-GCCCCAAAGTTGGA
257 AAACTTTTT-ATGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGT
* *
17834557 AGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
17834622 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
* * *
17834687 CTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGAG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
17834751 ACAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCATACCCCCCAG-CCCCCTC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCC-C
*
17834815 GATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGAC
579 GATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
17834880 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAAT
644 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAAT
* * *
17834945 CCAATCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
709 CCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * ** * * *
17835010 AACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAACCCGAGAATC
774 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC
* * * *
17835075 GACCGGATCCCCCTCTGCGTGCTGCCGATCCTACTGCCATAACCCTCGGTCAGGTTTGAT
839 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCATCGGTCCGGTTTGAT
** * *
17835135 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAATCGACGAAACGAGCGGTCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
17835200 CACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17835265 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17835330 TTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTGGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
17835395 TTTTTGTGGTTCGAGATTTTTTAAAATTTGTTTGGAAGGATTTTTGGCCCCAAA-TTGGTAGACA
261 TTTTTATGGTTCGAGATTTTTTAAAATTT-TTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
17835459 TGATCCTTGTATCTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* * *
17835524 TTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
17835589 AAAATCTTAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGATTGATGGGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
17835654 ATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGT
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGC
* * *
17835719 C-GAAACCCCAATGCCCGCCGGTTAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAG
585 CAG-AACCCCAATG-CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * **
17835783 AAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAATCCTCGGTCTGATCCGA
648 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGA
*
17835848 TCTTAGACTG-GTAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
713 TCTTAGACTGAG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
17835912 CCATGAAACGAGTGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGGC
777 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC
* * * * * * * *
17835977 CGGGTCCCACTCTGTGTGCTGCCGATCCTGCTGCCACAATCATCGATTCGATCTGAT
842 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCATCGGTCCGGTTTGAT
* * *
17836034 CTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGTGCGGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--GCGGGCGGGCGGG
* * *
17836099 CGGGCACTACGCCGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
17836164 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCAGTTTTATGGC-------TT-ATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
17836221 TCCTTTAAGCCTTCACGTGACGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCACGATTTTTT
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * **
17836286 AAACTTTTTGTGGCTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTCTTCACCCCAAACTTGGTA
257 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTA
* *
17836351 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGCTAAAAACTCAAAGTGTACAA
321 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* * *
17836416 GATTTTGTTACCATTTGAAAAAAGTGTCACCATTTC-AGCACTTTAATGGCTACTGGCAGCAAA-
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
** *
17836479 CTCGTAAAATCTCAAATGCTCTTTAAATGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
451 CT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * ** *
17836544 TCAATATAAGGGCCAAGTACCAGCAGCCACCGAACATCATGTGCTTACACCCCCCGGCCCCCCCG
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCG
* * *
17836609 ATCGCCAGAACCCCAATGCCGCCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGACCCGACG
580 ATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * * **
17836674 AAGAAAAATACGGCACCAGCACATGCCGGAGCCCAGTATGTGCTGCCACAACCCTCAGTCCGGTC
645 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATC
* * ** *
17836739 TGATCTTAGACCGAGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCA
710 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** *
17836804 ACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAATGGCAGGATGCACAAGCTGGGGATCG
775 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
** * * * * *
17836869 GTCGGGTCCCCCTTTGCGTGCCGCCAATCCTATTGCCACAACCCTCGGTCCGGTTTGAT
840 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCATCGGTCCGGTTTGAT
* * * * *
17836928 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGATGAAACGAGCGGGCGGGTGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
17836993 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *** * *
17837058 GCACATCTTCATATTTTTATGTGCCAAAGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
17837123 TTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTCGTTTTCTATTTTTCTCTATTTTTGGAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
17837188 TTTTTACGGTTGGGGATTTTTTAAAGTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACG
17837253 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
17837318 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17837383 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
17837448 ATAAGGGCCAAATACCAGCACCCATCGCACATCATTTGCGCACACCCCCC-GACCCCCTGATCGC
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGC
* * *
17837512 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGACGATGGTGCCCCGACGGAGAA
585 CAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* ** *
17837577 AAATACGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCTTAACCCTCGGTCCAGTCCGATC
650 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATC
* * * *
17837642 TTAGGCTGAGAAAGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGACTAAGTCAACCCA
715 TTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
17837707 TGAAACGAGCGTGCGGGCACTAAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGACCGG
780 CGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGG
* * * * * * * **
17837772 GTCCCCCTCTGCATGCTGCTGATCCTGCTCCCGCAACCATCAGTCTGGTTCAAT
845 GTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCATCGGTCCGGTTTGAT
* * *
17837826 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
17837891 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
17837956 TCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCA
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17838021 TTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTTGTTTTCTATTTTTCACGATATTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
17838086 CTTTTATGGTTCGCGATTTTTGAAAATTTTTTCGAAAGG-GATTTTGG-CCTAAACTTG
261 TTTTTATGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAG-TTTTGGCCCCAAACTTG
17838143 AAGTGTACAA
Statistics
Matches: 2660, Mismatches: 317, Indels: 64
0.87 0.10 0.02
Matches are distributed among these distances:
890 110 0.04
892 2 0.00
894 300 0.11
895 334 0.13
896 234 0.09
897 192 0.07
898 883 0.33
899 487 0.18
900 2 0.00
901 2 0.00
903 114 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
AGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCT
TAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCATCGGTCCGGTTTGAT
Found at i:17837670 original size:26 final size:26
Alignment explanation
Indices: 17837641--17837692 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17837631 CCAGTCCGAT
*
17837641 CTTAGGCTGAGAAAGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
* * *
17837667 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
17837693 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAAAGAACTCCGTATG
Found at i:17838515 original size:26 final size:25
Alignment explanation
Indices: 17838464--17838515 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
17838454 CCGGTCTGCT
*
17838464 CTTAGACTGGGAATCACTCCATATG
1 CTTAGACTGGGAATAACTCCATATG
*
17838489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAT-AACTCCATATG
17838515 C
1 C
17838516 CTATGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATAACTCCATATG
Found at i:17839376 original size:26 final size:26
Alignment explanation
Indices: 17839347--17839399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17839337 CTGATCTGAT
*
17839347 CTTAGACT-GGAATTGAACTCTGTATG
1 CTTAGACTAGGAA-TGAACTCCGTATG
17839373 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17839399 C
1 C
17839400 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17841160 original size:26 final size:26
Alignment explanation
Indices: 17841124--17841176 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17841114 CTGGTCTGAT
17841124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17841150 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17841176 C
1 C
17841177 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17847631 original size:26 final size:26
Alignment explanation
Indices: 17847602--17847654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17847592 CCAGTCCGAT
*
17847602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17847628 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17847654 C
1 C
17847655 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Done.